Query 024172
Match_columns 271
No_of_seqs 135 out of 240
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 03:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024172.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024172hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d5ya1 a.4.1.8 (A:3-56) Rob t 14.0 28 0.002 21.4 1.0 37 47-83 3-41 (54)
2 d1bl0a1 a.4.1.8 (A:9-62) MarA 9.8 46 0.0033 20.2 1.0 36 48-83 4-41 (54)
3 d2i9wa2 g.74.1.1 (A:1-39) Hypo 7.8 83 0.006 18.7 1.5 15 108-122 12-26 (39)
4 d1cg5b_ a.1.1.2 (B:) Hemoglobi 7.5 2.1E+02 0.016 20.3 4.3 22 127-148 100-121 (141)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 7.4 1.2E+02 0.0087 17.0 2.0 13 126-138 2-14 (30)
6 d1outb_ a.1.1.2 (B:) Hemoglobi 7.1 2.2E+02 0.016 20.2 4.2 35 128-164 106-140 (146)
7 d2aa1b1 a.1.1.2 (B:1-146) Hemo 7.0 2.5E+02 0.018 19.8 4.4 35 129-165 107-141 (146)
8 d1xq5a_ a.1.1.2 (A:) Hemoglobi 6.9 2.4E+02 0.018 19.8 4.3 36 128-165 102-137 (142)
9 d1spgb_ a.1.1.2 (B:) Hemoglobi 6.8 3E+02 0.022 19.6 4.8 22 127-148 105-127 (147)
10 d1outa_ a.1.1.2 (A:) Hemoglobi 6.7 3.2E+02 0.023 19.1 4.9 36 128-165 102-137 (142)
No 1
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.00 E-value=28 Score=21.37 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=28.5
Q ss_pred HHHhhhhHHHHhhhhhhcc--CCcceeeeChHHHHHhhc
Q 024172 47 KILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLK 83 (271)
Q Consensus 47 ~~~~~g~~yvq~n~~~y~~--~lkyYF~VdnsYV~~KL~ 83 (271)
.+++...+||++|+++=++ ++-..+.++.+|..+..+
T Consensus 3 ~ii~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk 41 (54)
T d1d5ya1 3 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (54)
T ss_dssp HHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3567788999999887665 677788888888877654
No 2
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=9.80 E-value=46 Score=20.20 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHhhhhHHHHhhhhhhcc--CCcceeeeChHHHHHhhc
Q 024172 48 ILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLK 83 (271)
Q Consensus 48 ~~~~g~~yvq~n~~~y~~--~lkyYF~VdnsYV~~KL~ 83 (271)
.+++-.+||++|+.+=++ ++-..+.++.+++.++.+
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk 41 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 41 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 466778899999876554 667778888888877654
No 3
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=7.78 E-value=83 Score=18.74 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=12.2
Q ss_pred CCCCccCCCCCCccc
Q 024172 108 YKPPIYDINAPDLYI 122 (271)
Q Consensus 108 ~~pPr~DinAPDLYI 122 (271)
-.|..+||.+|=||-
T Consensus 12 ~np~~~~is~pllyq 26 (39)
T d2i9wa2 12 INPALNAVSTPLLYQ 26 (39)
T ss_dssp CCTTCCCSSCCCBGG
T ss_pred cCcccccccchhHHH
Confidence 457789999999984
No 4
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=7.46 E-value=2.1e+02 Score=20.34 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhcCCCChhh
Q 024172 127 FGTYVVLAGFTLGLQGKFTPEA 148 (271)
Q Consensus 127 fvTYILL~g~~~G~~g~FsPE~ 148 (271)
.+.=+|+..+...+.++||||.
T Consensus 100 ~~g~~ll~~l~~~lg~~ft~e~ 121 (141)
T d1cg5b_ 100 LLGQTFMVELALHYKKTFRPKE 121 (141)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHH
T ss_pred HHHHHHHHHHHHHcCccCCHHH
Confidence 3455677777878888899997
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.43 E-value=1.2e+02 Score=16.95 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHh
Q 024172 126 AFGTYVVLAGFTL 138 (271)
Q Consensus 126 afvTYILL~g~~~ 138 (271)
--+|||++.+...
T Consensus 2 e~i~yv~ifac~i 14 (30)
T d2axtt1 2 ETITYVFIFACII 14 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHH
Confidence 3456665554443
No 6
>d1outb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=7.07 E-value=2.2e+02 Score=20.21 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHH
Q 024172 128 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQF 164 (271)
Q Consensus 128 vTYILL~g~~~G~~g~FsPE~Lg~~~s~~l~~~~lEv 164 (271)
+.=+|+..+...+.++||||. ..|+.-+.-.+..+
T Consensus 106 ~~~~ll~~l~~~lg~~fT~e~--~~AW~k~~~~v~~~ 140 (146)
T d1outb_ 106 LADVLTIVIAAKFGASFTPEI--QATWQKFMKVVVAA 140 (146)
T ss_dssp HHHHHHHHHHHHHGGGSCHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccCCHHH--HHHHHHHHHHHHHH
Confidence 444667777777778899996 44554443433333
No 7
>d2aa1b1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
Probab=6.98 E-value=2.5e+02 Score=19.78 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH
Q 024172 129 TYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (271)
Q Consensus 129 TYILL~g~~~G~~g~FsPE~Lg~~~s~~l~~~~lEv~ 165 (271)
.=+|+..+...+.+.||||. ..|+.-+.-.+.+++
T Consensus 107 ~~~ll~~l~~~lg~~~t~e~--~~AW~k~~~~i~~~l 141 (146)
T d2aa1b1 107 ADCLTIVVAARFGSAFTGEV--QAAFQKFMAVVVSSL 141 (146)
T ss_dssp HHHHHHHHHHHHGGGSCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccCCHHH--HHHHHHHHHHHHHHH
Confidence 34567777777888899997 445554444444443
No 8
>d1xq5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Yellow perch (Perca flavescens) [TaxId: 8167]}
Probab=6.94 E-value=2.4e+02 Score=19.76 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH
Q 024172 128 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (271)
Q Consensus 128 vTYILL~g~~~G~~g~FsPE~Lg~~~s~~l~~~~lEv~ 165 (271)
+.=+|+..+...+.+.|+||. ..|+.-+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~--~~AW~k~~~~v~~~l 137 (142)
T d1xq5a_ 102 LSHCILVLLAVKFPKDFTPEV--HISYDKFFSALARAL 137 (142)
T ss_dssp HHHHHHHHHHHHCGGGCCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCHHH--HHHHHHHHHHHHHHH
Confidence 344566666777778899997 445554444444443
No 9
>d1spgb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Fish (Leiostomus xanthurus) [TaxId: 59837]}
Probab=6.79 E-value=3e+02 Score=19.60 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhh-cCCCChhh
Q 024172 127 FGTYVVLAGFTLGL-QGKFTPEA 148 (271)
Q Consensus 127 fvTYILL~g~~~G~-~g~FsPE~ 148 (271)
.+.=+|+..+...+ .+.||||.
T Consensus 105 ~l~~~ll~~l~~~lG~~~fT~e~ 127 (147)
T d1spgb_ 105 LLGEIITMCVGAKFGPSAFTPEI 127 (147)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHH
Confidence 34457777777777 47899997
No 10
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=6.73 E-value=3.2e+02 Score=19.06 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH
Q 024172 128 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 165 (271)
Q Consensus 128 vTYILL~g~~~G~~g~FsPE~Lg~~~s~~l~~~~lEv~ 165 (271)
+.=+|+..+...+.+.||||.- .|+.-+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~--~AW~k~~~~v~~~l 137 (142)
T d1outa_ 102 LSHNILVTLAIHFPSDFTPEVH--IAVDKFLAAVSAAL 137 (142)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 3445566666667778999973 45444444444443
Done!