BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024173
         (271 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
 pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
 pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
 pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
 pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
 pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
 pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
 pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
          100 Mm Bicarbonate
          Length = 229

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)

Query: 69 GELCLH------LVHCDFSCTSEIQRAIPILK 94
          GEL +H      ++H DF+C S +Q A+ +LK
Sbjct: 58 GELFVHRNVANQVIHTDFNCLSVVQYAVDVLK 89


>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
 pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
 pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In
          100 Mm Sodium Bicarbonate
 pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In
          100 Mm Sodium Bicarbonate
          Length = 229

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)

Query: 69 GELCLH------LVHCDFSCTSEIQRAIPILK 94
          GEL +H      ++H DF+C S +Q A+ +LK
Sbjct: 58 GELFVHRNVANQVIHTDFNCLSVVQYAVDVLK 89


>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
 pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
 pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
 pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
 pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
 pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
 pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
          With Bicarbonate
 pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
          With Bicarbonate
 pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
          With Bicarbonate
 pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
          With Bicarbonate
 pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
          With Bicarbonate
 pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
          With Bicarbonate
          Length = 229

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)

Query: 69 GELCLH------LVHCDFSCTSEIQRAIPILK 94
          GEL +H      ++H DF+C S +Q A+ +LK
Sbjct: 58 GELFVHRNVANQVIHTDFNCLSVVQYAVDVLK 89


>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
          Anhydrase
 pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
          Anhydrase
 pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
          Anhydrase
 pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
          Anhydrase
 pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
          Anhydrase
 pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
          Anhydrase
          Length = 221

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)

Query: 69 GELCLH------LVHCDFSCTSEIQRAIPILK 94
          GEL +H      ++H DF+C S +Q A+ +LK
Sbjct: 58 GELFVHRNVANQVIHTDFNCLSVVQYAVDVLK 89


>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
 pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
 pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
 pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
 pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
          100 Mm Bicarbonate
 pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
          100 Mm Bicarbonate
          Length = 229

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)

Query: 69 GELCLH------LVHCDFSCTSEIQRAIPILK 94
          GEL +H      ++H DF+C S +Q A+ +LK
Sbjct: 58 GELFVHRNVANQVIHTDFNCLSVVQYAVDVLK 89


>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
 pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
 pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
 pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
 pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
 pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
 pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 100 Mm Bicarbonate
 pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 100 Mm Bicarbonate
 pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 100 Mm Bicarbonate
 pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 100 Mm Bicarbonate
 pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 100 Mm Bicarbonate
 pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 100 Mm Bicarbonate
 pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 1m Bicarbonate
 pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 1m Bicarbonate
 pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 1m Bicarbonate
 pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 1m Bicarbonate
 pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 1m Bicarbonate
 pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f
          With 1m Bicarbonate
          Length = 229

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)

Query: 69 GELCLH------LVHCDFSCTSEIQRAIPILK 94
          GEL +H      ++H DF+C S +Q A+ +LK
Sbjct: 58 GELFVHRNVANQVIHTDFNCLSVVQYAVDVLK 89


>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
 pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
          Length = 229

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)

Query: 69 GELCLH------LVHCDFSCTSEIQRAIPILK 94
          GEL +H      ++H DF+C S +Q A+ +LK
Sbjct: 58 GELFVHRNVANQVIHTDFNCLSVVQYAVDVLK 89


>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 227

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 84  SEIQRAIPILKKAYGDSMHKVLHVGPDTCSV--VSTLLKEEETEAWGVEPYD--IEDADA 139
           S I+   P+L K Y     KVL +    C V   S LL++   E  GV+  +  I  A  
Sbjct: 23  SRIETLEPLLXK-YXKKRGKVLDLA---CGVGGFSFLLEDYGFEVVGVDISEDXIRKARE 78

Query: 140 RCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV 193
             KS        V D +  L +  K+F  VI  D++ +  P  LN+   ++ RV
Sbjct: 79  YAKSRESNVEFIVGDAR-KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRV 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,423,273
Number of Sequences: 62578
Number of extensions: 282644
Number of successful extensions: 615
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 11
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)