BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024173
         (271 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabidopsis thaliana
           GN=At3g49720 PE=1 SV=1
          Length = 261

 Score =  420 bits (1079), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/270 (77%), Positives = 231/270 (85%), Gaps = 10/270 (3%)

Query: 1   MSRRPVSSTRRLVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGD 60
           M+RR V STRR+ D GSFPF GAL SKSRSSPLLS+ LVLVGA LLIGYA+SG GIF   
Sbjct: 1   MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSI 60

Query: 61  KAAVSRIEGELCLHLVHCDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLK 120
           K  VS++ G         D+SCT+E+QRAIP+LKKAYGD M KVLHVGPDTCSVVS+LLK
Sbjct: 61  KE-VSKVTG---------DYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLK 110

Query: 121 EEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 180
           EEETEAWGVEPYDIEDAD+ CKS V KG+VRVADIKFPLPYRAKSF LVIVSDALDYLSP
Sbjct: 111 EEETEAWGVEPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSP 170

Query: 181 KYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLE 240
           KYLNKT+P+LARVASDGV++FAG PGQQRAKVAELSKFGRPAKMRS+SWW R+FVQT+LE
Sbjct: 171 KYLNKTVPELARVASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLE 230

Query: 241 ENEPAVKKFEQAASKKSYKPNCQVFHLKPL 270
           EN+   KKFEQA SK  YKP CQVFHLKPL
Sbjct: 231 ENDAPSKKFEQAVSKGLYKPACQVFHLKPL 260


>sp|Q8R600|EFTS_FUSNN Elongation factor Ts OS=Fusobacterium nucleatum subsp. nucleatum
           (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
           GN=tsf PE=3 SV=2
          Length = 297

 Score = 33.1 bits (74), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 171 VSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL-SKFGRPAKMRSSSW 229
           +  ++DYL  K + K +    R+A++G++     P  ++A + E  S+    AK      
Sbjct: 34  IEKSIDYLREKGIAKAVKKAGRIAAEGLIFDEATPDHKKAVILEFNSETDFVAKNEEFKE 93

Query: 230 WIRYFVQTSLEENEPAVKKFEQA 252
           + R  V+ +LE N   +++  +A
Sbjct: 94  FGRKLVKIALERNVHQLEELNEA 116


>sp|Q5UPL2|YR135_MIMIV Putative GMC-type oxidoreductase R135 OS=Acanthamoeba polyphaga
           mimivirus GN=MIMI_R135 PE=1 SV=1
          Length = 702

 Score = 32.3 bits (72), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 227 SSWWIRYFVQTSLEENEPAVKKFEQAASKKSYKP 260
           ++WW  YFV T + ++ PA ++F    SK SY P
Sbjct: 587 ANWW-HYFVPTLVGDDTPAGREFADTLSKLSYYP 619


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,582,781
Number of Sequences: 539616
Number of extensions: 4180730
Number of successful extensions: 9555
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9550
Number of HSP's gapped (non-prelim): 7
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)