Query 024173
Match_columns 271
No_of_seqs 27 out of 29
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 02:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07021 MetW: Methionine bios 98.6 3.1E-08 6.8E-13 86.7 3.8 144 101-259 14-161 (193)
2 TIGR02081 metW methionine bios 97.5 0.00088 1.9E-08 54.8 9.0 132 102-242 15-163 (194)
3 PF13489 Methyltransf_23: Meth 97.5 0.00013 2.8E-09 55.0 3.7 133 99-243 21-160 (161)
4 TIGR02021 BchM-ChlM magnesium 97.4 0.0007 1.5E-08 56.0 8.0 132 102-241 57-201 (219)
5 PF08241 Methyltransf_11: Meth 97.4 0.0003 6.4E-09 48.3 4.5 92 105-201 1-95 (95)
6 TIGR03587 Pse_Me-ase pseudamin 97.3 0.00037 8E-09 59.1 4.5 98 102-204 45-143 (204)
7 PLN02336 phosphoethanolamine N 97.2 0.00066 1.4E-08 62.5 5.6 135 102-242 39-178 (475)
8 PRK07580 Mg-protoporphyrin IX 96.9 0.012 2.5E-07 48.1 9.8 105 88-201 51-163 (230)
9 TIGR02072 BioC biotin biosynth 96.5 0.029 6.2E-07 45.0 9.2 97 102-203 36-135 (240)
10 PTZ00098 phosphoethanolamine N 96.3 0.023 4.9E-07 49.6 8.2 139 99-242 51-198 (263)
11 smart00828 PKS_MT Methyltransf 96.3 0.015 3.3E-07 47.7 6.7 131 102-242 1-140 (224)
12 TIGR00740 methyltransferase, p 96.0 0.14 2.9E-06 43.2 11.2 117 82-203 35-161 (239)
13 PLN02244 tocopherol O-methyltr 95.6 0.081 1.7E-06 48.0 9.1 137 100-242 118-274 (340)
14 PRK10258 biotin biosynthesis p 95.6 0.059 1.3E-06 45.4 7.6 98 101-204 43-141 (251)
15 PRK11036 putative S-adenosyl-L 95.3 0.12 2.7E-06 44.1 8.6 100 98-203 42-149 (255)
16 PRK05785 hypothetical protein; 94.9 0.15 3.2E-06 43.8 7.9 98 101-206 52-150 (226)
17 TIGR01934 MenG_MenH_UbiE ubiqu 94.8 0.11 2.5E-06 41.5 6.5 98 102-204 41-144 (223)
18 PRK15451 tRNA cmo(5)U34 methyl 94.7 0.33 7.1E-06 41.7 9.6 151 81-247 37-198 (247)
19 PLN02585 magnesium protoporphy 94.7 0.26 5.5E-06 45.4 9.4 133 101-241 145-294 (315)
20 PRK06202 hypothetical protein; 94.5 0.068 1.5E-06 44.8 5.0 100 99-201 59-165 (232)
21 PLN02336 phosphoethanolamine N 94.4 0.15 3.2E-06 47.3 7.2 132 102-242 268-410 (475)
22 TIGR00452 methyltransferase, p 94.3 0.2 4.4E-06 46.1 8.0 133 102-241 123-268 (314)
23 TIGR01983 UbiG ubiquinone bios 94.1 0.44 9.5E-06 38.9 8.7 95 102-203 47-149 (224)
24 cd02440 AdoMet_MTases S-adenos 94.1 0.11 2.5E-06 34.1 4.4 97 103-202 1-103 (107)
25 TIGR00477 tehB tellurite resis 93.7 0.27 5.8E-06 40.9 6.9 129 81-220 17-160 (195)
26 PF08242 Methyltransf_12: Meth 93.7 0.041 8.9E-07 39.7 1.8 90 105-196 1-95 (99)
27 PLN02396 hexaprenyldihydroxybe 92.2 0.58 1.3E-05 43.3 7.4 95 102-202 133-234 (322)
28 PRK01683 trans-aconitate 2-met 92.1 0.92 2E-05 38.3 8.0 99 99-203 30-130 (258)
29 PRK05134 bifunctional 3-demeth 91.7 0.67 1.4E-05 38.5 6.6 102 101-205 49-153 (233)
30 PRK11207 tellurite resistance 91.7 0.61 1.3E-05 38.9 6.4 109 82-201 18-132 (197)
31 PLN02490 MPBQ/MSBQ methyltrans 91.4 0.6 1.3E-05 43.8 6.7 133 102-243 115-253 (340)
32 PRK08317 hypothetical protein; 91.4 0.94 2E-05 36.2 6.9 99 102-203 21-124 (241)
33 TIGR02752 MenG_heptapren 2-hep 91.4 0.49 1.1E-05 39.1 5.5 98 102-202 47-150 (231)
34 PLN02233 ubiquinone biosynthes 91.4 1.3 2.8E-05 38.8 8.3 121 80-203 29-182 (261)
35 PRK00216 ubiE ubiquinone/menaq 91.2 0.68 1.5E-05 37.4 6.0 99 102-203 53-158 (239)
36 PF12847 Methyltransf_18: Meth 90.5 0.28 6.1E-06 35.5 2.9 100 102-202 3-110 (112)
37 PRK15068 tRNA mo(5)U34 methylt 90.2 1.4 3E-05 40.2 7.7 98 102-203 124-226 (322)
38 PRK00312 pcm protein-L-isoaspa 89.9 1.4 2.9E-05 36.6 6.8 97 101-208 79-181 (212)
39 PRK00121 trmB tRNA (guanine-N( 89.4 0.61 1.3E-05 39.1 4.4 136 88-223 28-177 (202)
40 PF13649 Methyltransf_25: Meth 88.5 0.31 6.6E-06 35.7 1.8 90 104-196 1-99 (101)
41 TIGR02469 CbiT precorrin-6Y C5 87.7 1.7 3.7E-05 31.5 5.3 99 101-204 20-123 (124)
42 TIGR03534 RF_mod_PrmC protein- 87.6 4.1 8.9E-05 33.6 8.1 66 102-171 89-160 (251)
43 PRK12335 tellurite resistance 87.2 1.1 2.3E-05 39.6 4.7 109 82-201 108-221 (287)
44 PRK11088 rrmA 23S rRNA methylt 86.3 4.4 9.6E-05 35.2 8.0 104 91-207 76-184 (272)
45 PRK08287 cobalt-precorrin-6Y C 85.2 2.6 5.7E-05 34.2 5.7 94 102-203 33-131 (187)
46 TIGR00417 speE spermidine synt 85.1 1.9 4.1E-05 37.8 5.2 121 82-208 57-192 (270)
47 smart00138 MeTrc Methyltransfe 84.6 3.1 6.8E-05 36.8 6.4 114 88-203 86-241 (264)
48 PF13847 Methyltransf_31: Meth 83.8 1.7 3.8E-05 33.9 4.0 113 99-217 2-126 (152)
49 PF11899 DUF3419: Protein of u 81.2 0.96 2.1E-05 43.1 2.0 39 163-201 293-332 (380)
50 PF05401 NodS: Nodulation prot 78.7 1.6 3.5E-05 39.3 2.5 98 102-203 45-146 (201)
51 PRK13944 protein-L-isoaspartat 78.3 11 0.00023 31.7 7.1 90 102-203 74-173 (205)
52 PRK00517 prmA ribosomal protei 78.2 6.9 0.00015 33.8 6.1 100 100-211 119-221 (250)
53 PRK13942 protein-L-isoaspartat 78.1 8.9 0.00019 32.6 6.6 90 102-202 78-175 (212)
54 PRK11705 cyclopropane fatty ac 78.1 8.6 0.00019 36.1 7.2 107 90-202 156-266 (383)
55 TIGR00406 prmA ribosomal prote 75.8 7.4 0.00016 34.6 5.8 105 102-214 161-270 (288)
56 TIGR00537 hemK_rel_arch HemK-r 75.0 10 0.00022 30.6 5.9 70 102-175 21-92 (179)
57 smart00650 rADc Ribosomal RNA 71.6 7.3 0.00016 31.4 4.3 118 102-231 15-136 (169)
58 PRK03612 spermidine synthase; 68.2 12 0.00027 36.4 5.9 105 100-208 297-421 (521)
59 PRK09328 N5-glutamine S-adenos 65.4 25 0.00053 29.8 6.4 68 102-171 110-181 (275)
60 PRK14103 trans-aconitate 2-met 65.2 17 0.00037 31.1 5.5 93 101-202 30-125 (255)
61 PRK11873 arsM arsenite S-adeno 64.8 52 0.0011 28.3 8.4 135 101-241 78-225 (272)
62 PF12147 Methyltransf_20: Puta 64.6 4.9 0.00011 38.5 2.3 155 84-240 121-292 (311)
63 PF01135 PCMT: Protein-L-isoas 57.5 14 0.00031 32.2 3.8 94 102-204 74-174 (209)
64 PRK00811 spermidine synthase; 55.9 36 0.00079 30.5 6.1 119 83-207 62-196 (283)
65 PF01209 Ubie_methyltran: ubiE 54.9 20 0.00042 31.6 4.2 103 102-207 49-159 (233)
66 PF10717 ODV-E18: Occlusion-de 54.3 12 0.00027 30.3 2.6 32 29-60 23-54 (85)
67 PF02562 PhoH: PhoH-like prote 54.0 24 0.00053 31.2 4.7 66 139-211 94-161 (205)
68 TIGR00080 pimt protein-L-isoas 51.4 35 0.00076 28.6 5.0 94 102-203 79-177 (215)
69 PLN02823 spermine synthase 51.2 37 0.00081 31.9 5.7 110 82-203 88-220 (336)
70 PRK13168 rumA 23S rRNA m(5)U19 51.2 23 0.0005 33.5 4.3 110 102-219 299-416 (443)
71 PLN02232 ubiquinone biosynthes 49.5 14 0.0003 30.0 2.3 49 150-201 30-79 (160)
72 TIGR00438 rrmJ cell division p 46.4 75 0.0016 25.9 6.1 107 85-206 22-149 (188)
73 PF08655 DASH_Ask1: DASH compl 45.7 10 0.00023 29.0 1.0 14 225-238 46-59 (66)
74 TIGR00536 hemK_fam HemK family 44.9 1.3E+02 0.0028 26.6 7.8 68 102-171 116-188 (284)
75 TIGR00091 tRNA (guanine-N(7)-) 44.9 91 0.002 25.9 6.5 127 93-219 9-149 (194)
76 PRK04457 spermidine synthase; 44.8 32 0.00069 30.5 4.0 113 100-215 66-191 (262)
77 PF03141 Methyltransf_29: Puta 43.6 42 0.00091 34.2 5.0 122 83-210 102-226 (506)
78 PF05157 T2SE_Nter: Type II se 43.3 7.5 0.00016 28.1 -0.1 65 157-223 20-86 (109)
79 PF08955 BofC_C: BofC C-termin 42.5 14 0.0003 29.0 1.2 16 193-208 15-31 (75)
80 TIGR03676 aRF1/eRF1 peptide ch 41.6 8.2 0.00018 37.1 -0.2 41 195-236 78-122 (403)
81 TIGR02085 meth_trns_rumB 23S r 40.5 65 0.0014 30.0 5.5 107 102-215 235-346 (374)
82 PF06040 Adeno_E3: Adenovirus 40.0 27 0.00058 30.1 2.6 46 8-53 58-109 (127)
83 cd03756 proteasome_alpha_arche 39.6 39 0.00084 28.5 3.6 68 167-235 39-114 (211)
84 COG2226 UbiE Methylase involve 39.5 55 0.0012 29.7 4.7 102 101-206 52-161 (238)
85 PRK00440 rfc replication facto 37.3 16 0.00034 31.3 0.9 53 152-213 2-55 (319)
86 PRK03522 rumB 23S rRNA methylu 37.2 44 0.00095 30.1 3.7 104 102-215 175-286 (315)
87 cd02979 PHOX_C FAD-dependent P 37.0 47 0.001 27.9 3.7 51 162-219 3-55 (167)
88 PF13506 Glyco_transf_21: Glyc 36.6 22 0.00048 29.5 1.7 39 164-205 30-68 (175)
89 PRK14968 putative methyltransf 36.1 2.1E+02 0.0046 22.4 7.1 69 102-173 25-98 (188)
90 COG1409 Icc Predicted phosphoh 35.6 22 0.00048 29.1 1.5 40 148-203 2-41 (301)
91 PRK14967 putative methyltransf 35.1 53 0.0011 27.7 3.7 68 102-171 38-107 (223)
92 PF03848 TehB: Tellurite resis 34.7 85 0.0018 27.6 5.0 107 84-203 20-133 (192)
93 PF02887 PK_C: Pyruvate kinase 34.4 16 0.00035 28.2 0.5 30 125-154 57-94 (117)
94 TIGR00479 rumA 23S rRNA (uraci 33.9 37 0.0008 31.7 2.8 110 102-219 294-412 (431)
95 PRK00440 rfc replication facto 32.7 2.6E+02 0.0056 23.9 7.5 147 100-250 37-190 (319)
96 PRK10909 rsmD 16S rRNA m(2)G96 32.2 63 0.0014 28.0 3.8 92 102-203 55-159 (199)
97 PF10514 Bcl-2_BAD: Pro-apopto 32.0 5.1 0.00011 35.7 -2.9 70 158-243 90-162 (167)
98 TIGR02480 fliN flagellar motor 30.8 12 0.00026 27.8 -0.7 29 183-211 37-65 (77)
99 PRK00107 gidB 16S rRNA methylt 30.8 1.6E+02 0.0034 25.2 5.9 108 102-218 47-159 (187)
100 PRK04266 fibrillarin; Provisio 30.4 1.7E+02 0.0037 25.7 6.2 95 102-202 74-175 (226)
101 PF01558 POR: Pyruvate ferredo 29.9 37 0.0008 27.5 1.9 78 114-205 11-88 (173)
102 COG2126 RPL37A Ribosomal prote 29.2 24 0.00052 27.2 0.7 15 217-231 38-52 (61)
103 PRK06922 hypothetical protein; 29.1 67 0.0015 33.8 4.0 99 102-202 420-536 (677)
104 PF04639 Baculo_E56: Baculovir 27.8 48 0.001 32.1 2.5 34 12-46 257-290 (305)
105 PF03815 LCCL: LCCL domain; I 27.7 33 0.00072 26.9 1.2 40 102-150 19-58 (96)
106 PF13624 SurA_N_3: SurA N-term 27.4 33 0.00072 26.8 1.2 58 33-99 11-68 (154)
107 PLN02366 spermidine synthase 27.3 1.7E+02 0.0036 27.2 5.8 117 82-207 76-211 (308)
108 TIGR03438 probable methyltrans 27.0 2.8E+02 0.006 25.0 7.0 99 102-201 65-175 (301)
109 TIGR00755 ksgA dimethyladenosi 26.6 1.2E+02 0.0026 26.3 4.5 81 101-188 30-116 (253)
110 PF08534 Redoxin: Redoxin; In 26.5 1.4E+02 0.003 22.8 4.4 41 168-208 87-136 (146)
111 PF14035 YlzJ: YlzJ-like prote 26.5 24 0.00051 26.4 0.2 14 169-182 46-59 (66)
112 PRK11783 rlmL 23S rRNA m(2)G24 25.9 95 0.0021 31.7 4.3 117 102-223 540-676 (702)
113 PF10007 DUF2250: Uncharacteri 25.9 60 0.0013 26.0 2.4 36 107-153 19-54 (92)
114 TIGR01397 fliM_switch flagella 25.7 18 0.00039 32.5 -0.7 29 183-211 282-310 (320)
115 COG0312 TldD Predicted Zn-depe 25.3 18 0.00039 34.2 -0.8 106 90-208 260-378 (454)
116 TIGR03533 L3_gln_methyl protei 25.2 2.4E+02 0.0051 25.4 6.3 65 102-171 123-195 (284)
117 PRK06033 hypothetical protein; 25.0 17 0.00037 28.0 -0.8 29 183-211 36-64 (83)
118 smart00751 BSD domain in trans 24.9 52 0.0011 22.7 1.7 26 212-237 22-47 (51)
119 PRK11188 rrmJ 23S rRNA methylt 24.7 3E+02 0.0064 23.6 6.5 97 102-206 53-168 (209)
120 PF08346 AntA: AntA/AntB antir 24.5 54 0.0012 24.9 1.8 33 212-245 3-35 (71)
121 PRK11805 N5-glutamine S-adenos 24.3 2.4E+02 0.0051 25.9 6.2 68 102-171 135-207 (307)
122 COG3897 Predicted methyltransf 24.3 92 0.002 29.0 3.6 111 102-218 81-193 (218)
123 PF13659 Methyltransf_26: Meth 24.2 49 0.0011 24.1 1.5 70 102-171 2-76 (117)
124 PRK00377 cbiT cobalt-precorrin 23.8 1.9E+02 0.0041 24.0 5.0 114 102-223 42-166 (198)
125 PF01630 Glyco_hydro_56: Hyalu 22.6 33 0.00072 33.0 0.4 44 173-216 274-318 (337)
126 TIGR02716 C20_methyl_CrtF C-20 22.5 3.4E+02 0.0074 24.0 6.6 109 88-203 136-254 (306)
127 cd01911 proteasome_alpha prote 22.5 1.3E+02 0.0029 25.2 3.9 67 168-236 39-114 (209)
128 TIGR03704 PrmC_rel_meth putati 22.3 2.4E+02 0.0052 24.9 5.7 113 103-219 89-232 (251)
129 PRK10927 essential cell divisi 22.2 1.1E+02 0.0024 29.7 3.8 68 196-266 246-316 (319)
130 cd06305 PBP1_methylthioribose_ 22.1 96 0.0021 25.2 2.9 44 179-222 40-83 (273)
131 PRK07402 precorrin-6B methylas 22.1 1.9E+02 0.0041 23.7 4.7 96 102-203 42-142 (196)
132 PF01978 TrmB: Sugar-specific 21.9 53 0.0011 23.0 1.2 21 136-156 38-58 (68)
133 cd06307 PBP1_uncharacterized_s 21.9 91 0.002 25.6 2.8 51 172-224 37-88 (275)
134 PRK01544 bifunctional N5-gluta 21.8 2.9E+02 0.0063 27.2 6.6 68 102-171 140-212 (506)
135 COG4088 Predicted nucleotide k 21.7 50 0.0011 31.3 1.4 21 198-218 3-24 (261)
136 PF01102 Glycophorin_A: Glycop 21.6 65 0.0014 27.0 1.9 12 40-51 77-88 (122)
137 KOG0829 60S ribosomal protein 21.5 37 0.00079 30.5 0.4 10 153-162 141-150 (169)
138 PRK08433 flagellar motor switc 21.2 23 0.0005 29.1 -0.8 29 183-211 61-89 (111)
139 cd08815 Death_TNFRSF25_DR3 Dea 20.9 74 0.0016 25.2 2.0 21 228-248 12-32 (77)
140 PF01299 Lamp: Lysosome-associ 20.8 53 0.0012 29.7 1.3 17 36-52 279-295 (306)
141 PRK06762 hypothetical protein; 20.8 2.2E+02 0.0048 22.3 4.7 35 198-232 4-40 (166)
142 PRK12490 6-phosphogluconate de 20.8 1.2E+02 0.0025 27.1 3.4 33 86-119 142-174 (299)
143 cd06565 GH20_GcnA-like Glycosy 20.7 1.9E+02 0.004 26.4 4.8 144 87-257 113-267 (301)
144 PF15060 PPDFL: Differentiatio 20.7 16 0.00035 30.8 -1.8 16 223-238 48-63 (110)
145 PF13458 Peripla_BP_6: Peripla 20.5 4.7E+02 0.01 22.1 6.8 187 31-238 12-236 (343)
146 PF00326 Peptidase_S9: Prolyl 20.4 72 0.0016 25.8 1.9 51 50-109 21-71 (213)
147 PRK07452 DNA polymerase III su 20.4 3.3E+02 0.0073 24.0 6.2 87 166-253 62-162 (326)
148 PF01052 SpoA: Surface present 20.3 22 0.00047 25.6 -1.0 29 183-211 37-65 (77)
149 PRK04011 peptide chain release 20.3 38 0.00082 32.6 0.3 43 193-236 83-130 (411)
No 1
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.60 E-value=3.1e-08 Score=86.70 Aligned_cols=144 Identities=22% Similarity=0.398 Sum_probs=108.3
Q ss_pred ccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhce-eeeeeecCCCC-CCCCCccEEEeccccccc
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLP-YRAKSFPLVIVSDALDYL 178 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGi-VRvADIkfpLP-YR~kSFslVivSDaLDyL 178 (271)
-.+||++|-......+.|.++.++++.|||-. +.+..+-|+||+ |--.|+.-.|+ |..+||+.||.|++|..+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid-----~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEID-----PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecC-----HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 37899999999999999999999999999832 345788899999 99999999997 999999999999999998
Q ss_pred ChhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhcCCcccc--ccchhHHHHHHHhccccchHHHHHHHHHHhhc
Q 024173 179 SPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKM--RSSSWWIRYFVQTSLEENEPAVKKFEQAASKK 256 (271)
Q Consensus 179 spryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK~--rsssWW~r~F~qt~LeEnE~a~KkFeqa~~k~ 256 (271)
++-.+.|-|+.||...+||-|.-+ |--|.+. +|---||--.. =.-+|+- +-++- =-.+|-||..+.+.
T Consensus 89 --~~P~~vL~EmlRVgr~~IVsFPNF-g~W~~R~-~l~~~GrmPvt~~lPy~WYd----TPNih--~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 89 --RRPDEVLEEMLRVGRRAIVSFPNF-GHWRNRL-QLLLRGRMPVTKALPYEWYD----TPNIH--LCTIKDFEDLCREL 158 (193)
T ss_pred --hHHHHHHHHHHHhcCeEEEEecCh-HHHHHHH-HHHhcCCCCCCCCCCCcccC----CCCcc--cccHHHHHHHHHHC
Confidence 667788999999999999988754 2222332 23323442222 2346652 22221 23578888888876
Q ss_pred cCC
Q 024173 257 SYK 259 (271)
Q Consensus 257 sY~ 259 (271)
..+
T Consensus 159 ~i~ 161 (193)
T PF07021_consen 159 GIR 161 (193)
T ss_pred CCE
Confidence 553
No 2
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.48 E-value=0.00088 Score=54.76 Aligned_cols=132 Identities=21% Similarity=0.320 Sum_probs=85.0
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhce-eeeeeecCCC-CCCCCCccEEEecccccccC
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPL-PYRAKSFPLVIVSDALDYLS 179 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGi-VRvADIkfpL-PYR~kSFslVivSDaLDyLs 179 (271)
.+||.+|-.+..+...|.+.....++|||+-+ +.-..|+ ++|+ +..+|+.-.+ |+..++|++|+.+++|.|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 37999999999987777666666789998653 1111222 2332 3457776445 47788999999999999984
Q ss_pred hhhhcccccchhhcccCceEEEecCCCch-hhhHHhhhh--------c------CCccccccchhHHHHHHHhccccc
Q 024173 180 PKYLNKTLPDLARVASDGVLIFAGYPGQQ-RAKVAELSK--------F------GRPAKMRSSSWWIRYFVQTSLEEN 242 (271)
Q Consensus 180 pryLNkTLPeLaRvsadglViF~G~Pgqq-rakvaelsk--------f------grpaK~rsssWW~r~F~qt~LeEn 242 (271)
. ..+.|-++.|+...+++.|..+.-.+ +.+. +.+ + ..+++..+-.++.+.+.++|++--
T Consensus 90 d--~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 90 N--PEEILDEMLRVGRHAIVSFPNFGYWRVRWSI--LTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred C--HHHHHHHHHHhCCeEEEEcCChhHHHHHHHH--HhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 3 56788899999887766654432222 1111 111 0 013456667777777777777643
No 3
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.46 E-value=0.00013 Score=54.99 Aligned_cols=133 Identities=22% Similarity=0.259 Sum_probs=85.5
Q ss_pred ccccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEeccccccc
Q 024173 99 DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 178 (271)
Q Consensus 99 dsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyL 178 (271)
+.=.+||-+|+.+......| ++...+..|+||.+-.... +-.+......--.+...++|++|+.+++|.|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 45569999999999665555 6777799999997532211 11122111111444578899999999999999
Q ss_pred Chhhhcccccchhhccc-CceEEEecC-CCc-hhhhHHhhhhcCCc----cccccchhHHHHHHHhccccch
Q 024173 179 SPKYLNKTLPDLARVAS-DGVLIFAGY-PGQ-QRAKVAELSKFGRP----AKMRSSSWWIRYFVQTSLEENE 243 (271)
Q Consensus 179 spryLNkTLPeLaRvsa-dglViF~G~-Pgq-qrakvaelskfgrp----aK~rsssWW~r~F~qt~LeEnE 243 (271)
. .....|-++.|+-. +|+++|+-. ..+ ......+. .+.++ ...-+..=|.+.|.|+|++.-|
T Consensus 92 ~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 P--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW-RYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp S--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC-CGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred c--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc-CCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 8 37788999998765 577766652 211 11112221 23333 3455666788888888887654
No 4
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.44 E-value=0.0007 Score=55.98 Aligned_cols=132 Identities=17% Similarity=0.128 Sum_probs=88.4
Q ss_pred cceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhce-----eeeeeecCCCCCCCCCccEEEeccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIVSDA 174 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi-----VRvADIkfpLPYR~kSFslVivSDa 174 (271)
.+||-+|-.+-.+...|.+. ..+.+|||+-+ ++.+. +.+-..+. ..++|+... | ++|++|+.+|.
T Consensus 57 ~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~---~~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~ 128 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMAR---NRAQGRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDV 128 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHH---HHHHhcCCCCceEEEECChhhC-C---CCcCEEEEhhH
Confidence 57999999999888877764 45788887642 22222 22323332 456777653 3 89999999999
Q ss_pred ccccChhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhc-C-----CccccccchhHHHHHHHhcccc
Q 024173 175 LDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKF-G-----RPAKMRSSSWWIRYFVQTSLEE 241 (271)
Q Consensus 175 LDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakvaelskf-g-----rpaK~rsssWW~r~F~qt~LeE 241 (271)
+.|+++..+.+.+=++.|+...++++.....+........+.++ + .++-..+..+|.+++.++|++-
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCcee
Confidence 99999888999999999988887776655444332222222222 2 2334556778888888877654
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.40 E-value=0.0003 Score=48.34 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=68.8
Q ss_pred eeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhce--eeeeeecCCCCCCCCCccEEEecccccccChhh
Q 024173 105 LHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKY 182 (271)
Q Consensus 105 LHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGi--VRvADIkfpLPYR~kSFslVivSDaLDyLspry 182 (271)
|-+|-.+......|.+....+.+|+|+.. +.-..|+....+.- ++.+|+. .||+...||++|+..+++.|+ ..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~--~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHL--ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGS--SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHH-hCccccccccccccccceeec--cC
Confidence 55788888888888888899999999875 34456666665543 7788854 559999999999999999999 77
Q ss_pred hcccccchhhccc-CceEEE
Q 024173 183 LNKTLPDLARVAS-DGVLIF 201 (271)
Q Consensus 183 LNkTLPeLaRvsa-dglViF 201 (271)
..+.+-|+.||-. +|.++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 8889999999754 455544
No 6
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.26 E-value=0.00037 Score=59.06 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=75.2
Q ss_pred cceeeecCCchhHhHhhhcc-ccccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccccCh
Q 024173 102 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 180 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLsp 180 (271)
.+||-||-.|-.....|.+. ...+..|||+.+ ++-..++....+--+..+|+.- |+...+|++|+..++|.|++|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH
Confidence 57999999999988888775 467899998753 2333444333333466778765 788899999999999999999
Q ss_pred hhhcccccchhhcccCceEEEecC
Q 024173 181 KYLNKTLPDLARVASDGVLIFAGY 204 (271)
Q Consensus 181 ryLNkTLPeLaRvsadglViF~G~ 204 (271)
.++.+.+-++.|++.. .|+++.+
T Consensus 121 ~~~~~~l~el~r~~~~-~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCSNR-YILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhcCc-EEEEEEe
Confidence 9999999999999854 5555553
No 7
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.18 E-value=0.00066 Score=62.54 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=92.5
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHH---hhceeeeeeec-CCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV---HKGIVRVADIK-FPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLv---rKGiVRvADIk-fpLPYR~kSFslVivSDaLDy 177 (271)
.+||-+|..+..+...|.+. ..+..|||+.+- -. ..++.+- ..--+..+|+. ..+|+-..+|++|+.+.++.|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~-~l-~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIES-VI-KKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHH-HH-HHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 47999999999888877765 457888886431 11 1222211 11224456763 345665789999999999999
Q ss_pred cChhhhcccccchhhc-ccCceEEEecCCCchhhhHHhhhhcCCccccccchhHHHHHHHhccccc
Q 024173 178 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 242 (271)
Q Consensus 178 LspryLNkTLPeLaRv-sadglViF~G~PgqqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEn 242 (271)
+++.-+.+.|-++.|+ ..+|+++|.-...-+. .++..-..|-..|+..||.+.|.+.++...
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQS---GDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC---CcccccCCCCeecChHHHHHHHHHheeccC
Confidence 9998888999999996 5578887764322111 123334566777889999999999886544
No 8
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.90 E-value=0.012 Score=48.12 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=69.0
Q ss_pred hHhHHHHHHhcc-cccceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhce-----eeeeeecCCC
Q 024173 88 RAIPILKKAYGD-SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPL 159 (271)
Q Consensus 88 ~AiP~LkkaYGd-sM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi-----VRvADIkfpL 159 (271)
.++..|+. ||. .-.+||-||..|-.....|.+.. .+..|+|+-+ ++.+..++.. .|+ ...+|+
T Consensus 51 ~~~~~l~~-~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~---~~~~~~i~~~~~d~---- 121 (230)
T PRK07580 51 TVLSWLPA-DGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPE---AGLAGNITFEVGDL---- 121 (230)
T ss_pred HHHHHHHh-cCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHh---cCCccCcEEEEcCc----
Confidence 44455543 222 34689999999998877777653 4577776522 2223333322 222 334553
Q ss_pred CCCCCCccEEEecccccccChhhhcccccchhhcccCceEEE
Q 024173 160 PYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIF 201 (271)
Q Consensus 160 PYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF 201 (271)
+.-..+|++|+.++++.+.+...+.+.+-+|.|+...+++|.
T Consensus 122 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 333588999999999999988889999999999877666543
No 9
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.47 E-value=0.029 Score=45.04 Aligned_cols=97 Identities=28% Similarity=0.381 Sum_probs=64.1
Q ss_pred cceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHHhh-ceeeeeeecCCCCCCCCCccEEEecccccccC
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 179 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrK-GiVRvADIkfpLPYR~kSFslVivSDaLDyLs 179 (271)
.+||.+|..+-.....|++.. .....|+|+.. +.-..++..... -.+-++|+. .+|+-..+|++||.+..+.|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc
Confidence 579999999988777776653 23347777632 222233332221 134456665 4566678999999999999884
Q ss_pred hhhhcccccchhhc-ccCceEEEec
Q 024173 180 PKYLNKTLPDLARV-ASDGVLIFAG 203 (271)
Q Consensus 180 pryLNkTLPeLaRv-sadglViF~G 203 (271)
. +++.|.++.|+ ..+|.++|+.
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEe
Confidence 3 56788888875 5578888875
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.27 E-value=0.023 Score=49.65 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=86.9
Q ss_pred ccccceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhcee--eeeeecCCCCCCCCCccEEEeccc
Q 024173 99 DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDA 174 (271)
Q Consensus 99 dsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiV--RvADIkfpLPYR~kSFslVivSDa 174 (271)
+.-.+||-||..+=.....|.+.-..+..||++-+ ++.+..+++. ..-| ..+|+. .+|+...+|++|+..|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~-~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDIL-KKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcc-cCCCCCCCeEEEEEhhh
Confidence 34468999999886655555443345777777642 2233333322 1223 346663 57888899999999999
Q ss_pred ccccChhhhcccccchhhc-ccCceEEEecCCC----chhhhHHhhhhcCCccccccchhHHHHHHHhccccc
Q 024173 175 LDYLSPKYLNKTLPDLARV-ASDGVLIFAGYPG----QQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 242 (271)
Q Consensus 175 LDyLspryLNkTLPeLaRv-sadglViF~G~Pg----qqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEn 242 (271)
+-++++.-..+.|-++.|+ ..+|.++++.+.- .-.....+..+ .|...+.+...+.+.+.++|++.-
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIK-KRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHH-hcCCCCCCHHHHHHHHHHCCCCee
Confidence 9898776777888888885 6678888886421 11111222111 122345667778888888887653
No 11
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.26 E-value=0.015 Score=47.67 Aligned_cols=131 Identities=14% Similarity=0.231 Sum_probs=79.9
Q ss_pred cceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHHh-hc-----eeeeeee-cCCCCCCCCCccEEEecc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH-KG-----IVRVADI-KFPLPYRAKSFPLVIVSD 173 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvr-KG-----iVRvADI-kfpLPYR~kSFslVivSD 173 (271)
++||.||..+......+.++- +.+..|+++-+ +.-..++..++ .| -+...|+ +. |+ +.+|++|+..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~--~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISP--EQAEVGRERIRALGLQGRIRIFYRDSAKD--PF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCCcceEEEecccccC--CC-CCCCCEeehHH
Confidence 479999999988777777653 45677776521 11123333322 23 3445676 33 33 46899999999
Q ss_pred cccccChhhhcccccchhh-cccCceEEEecCCCchhhhHHhhhhcCCccccccchhHHHHHHHhccccc
Q 024173 174 ALDYLSPKYLNKTLPDLAR-VASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 242 (271)
Q Consensus 174 aLDyLspryLNkTLPeLaR-vsadglViF~G~PgqqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEn 242 (271)
.+.++.. ....|-++.| +..+|.++++....+....... .+ .+.-+.+...|.+.+.++|++-.
T Consensus 76 ~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 76 VIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEH--EE-TTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HHHhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccc--cc-cccccCCHHHHHHHHHHCCCeEE
Confidence 9988754 3566777776 5778888887643222111110 01 11115677889999999887654
No 12
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.00 E-value=0.14 Score=43.20 Aligned_cols=117 Identities=19% Similarity=0.287 Sum_probs=79.2
Q ss_pred chHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhcc---ccccccccccccccchhHHHHHHHhh-c-----eeee
Q 024173 82 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE---EETEAWGVEPYDIEDADARCKSLVHK-G-----IVRV 152 (271)
Q Consensus 82 ct~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE---e~tEAWGVEPydied~d~~CKsLvrK-G-----iVRv 152 (271)
+-.++...|=-|.+.+...-.+||.+|-.|=.....|++. .+.+..|||+.+ +.-..|+..++. + -+..
T Consensus 35 ~y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~ 112 (239)
T TIGR00740 35 GYSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILC 112 (239)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEE
Confidence 3445555555566777666678999998887766666653 467788888753 333445444332 1 2445
Q ss_pred eeecCCCCCCCCCccEEEecccccccChhhhcccccchhhcc-cCceEEEec
Q 024173 153 ADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG 203 (271)
Q Consensus 153 ADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF~G 203 (271)
.|+. -+|. ++|++|+.+.+|.|+++....+.|.++.|+- .+|.++++.
T Consensus 113 ~d~~-~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 113 NDIR-HVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CChh-hCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 5663 2333 3589999999999999888888899998875 578887774
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=95.64 E-value=0.081 Score=47.99 Aligned_cols=137 Identities=21% Similarity=0.335 Sum_probs=88.6
Q ss_pred cccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhh-ce-----eeeeeecCCCCCCCCCccEEEecc
Q 024173 100 SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI-----VRVADIKFPLPYRAKSFPLVIVSD 173 (271)
Q Consensus 100 sM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-Gi-----VRvADIkfpLPYR~kSFslVivSD 173 (271)
.-.+||-||=.+-.....|.+.-+.+.-||++.+ +.-..++.+.++ |+ +.++|+ ..+|+...+|++|+..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~--~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP--VQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 3468999999998877777765566777887543 122334444432 32 456776 45788889999999999
Q ss_pred cccccChhhhcccccchhhccc-CceEEEecC------CCch------hhhHHhhh-hcCCccccccchhHHHHHHHhcc
Q 024173 174 ALDYLSPKYLNKTLPDLARVAS-DGVLIFAGY------PGQQ------RAKVAELS-KFGRPAKMRSSSWWIRYFVQTSL 239 (271)
Q Consensus 174 aLDyLspryLNkTLPeLaRvsa-dglViF~G~------Pgqq------rakvaels-kfgrpaK~rsssWW~r~F~qt~L 239 (271)
++.++.. ..+.|-|+.|+-. +|.++++.. |+.. +.-..++. .+.-| ...+..+|.+.+.++|+
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p-~~~s~~~~~~~l~~aGf 271 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLP-AWCSTSDYVKLAESLGL 271 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHCCC
Confidence 9999864 3467788888865 577776542 2221 11112221 12222 34578899999999998
Q ss_pred ccc
Q 024173 240 EEN 242 (271)
Q Consensus 240 eEn 242 (271)
+.-
T Consensus 272 ~~v 274 (340)
T PLN02244 272 QDI 274 (340)
T ss_pred Cee
Confidence 753
No 14
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.61 E-value=0.059 Score=45.40 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=67.3
Q ss_pred ccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccccCh
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 180 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLsp 180 (271)
-.+||.+|-.|..+...| .+...+..|+++.. +.-..|+.....--+..+|+.- +|+...+|++|+.+.++.+..
T Consensus 43 ~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~--~~l~~a~~~~~~~~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~~- 117 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYW-RERGSQVTALDLSP--PMLAQARQKDAADHYLAGDIES-LPLATATFDLAWSNLAVQWCG- 117 (251)
T ss_pred CCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCH--HHHHHHHhhCCCCCEEEcCccc-CcCCCCcEEEEEECchhhhcC-
Confidence 467999999997655444 44556778887643 2222333322222345778743 677788999999999998864
Q ss_pred hhhcccccchhhccc-CceEEEecC
Q 024173 181 KYLNKTLPDLARVAS-DGVLIFAGY 204 (271)
Q Consensus 181 ryLNkTLPeLaRvsa-dglViF~G~ 204 (271)
.+.+.|.++.|+-. +|+++|+.+
T Consensus 118 -d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 118 -NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred -CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 46789999999865 588888763
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.31 E-value=0.12 Score=44.12 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=65.7
Q ss_pred cccccceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhce-----eeeeeecCCCCCCCCCccEEE
Q 024173 98 GDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVI 170 (271)
Q Consensus 98 GdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi-----VRvADIkfpLPYR~kSFslVi 170 (271)
+..-.+||-+|-.|......|.+. ..+..|||+.+ ++-+..+|+ +.|+ +..+|+.--.|.-..+|++|+
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~---~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAE---AKGVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHH---hcCCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 344468999999999887777765 67888998753 222333333 2343 344566432234467999999
Q ss_pred ecccccccChhhhcccccchhhcc-cCceEEEec
Q 024173 171 VSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG 203 (271)
Q Consensus 171 vSDaLDyLspryLNkTLPeLaRvs-adglViF~G 203 (271)
..+.|.|++... +.|.++.|+- .+|+++++-
T Consensus 118 ~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADPK--SVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEE
Confidence 999999996432 5677888764 456665543
No 16
>PRK05785 hypothetical protein; Provisional
Probab=94.87 E-value=0.15 Score=43.83 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=68.2
Q ss_pred ccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccccCh
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 180 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLsp 180 (271)
-.+||-||-.|..+...|.+.-+.+..|||+-+ +.=..++ .|.-...+|.. .||+...||++|+.+.+|.++..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~---~~~~~~~~d~~-~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNL---VADDKVVGSFE-ALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHH---hccceEEechh-hCCCCCCCEEEEEecChhhccCC
Confidence 468999999999876666554356888998742 1111111 12223356654 57899999999999999988753
Q ss_pred hhhcccccchhhcccCce-EEEecCCC
Q 024173 181 KYLNKTLPDLARVASDGV-LIFAGYPG 206 (271)
Q Consensus 181 ryLNkTLPeLaRvsadgl-ViF~G~Pg 206 (271)
+.+.|-|+.||-...+ ++-.+.|.
T Consensus 126 --~~~~l~e~~RvLkp~~~ile~~~p~ 150 (226)
T PRK05785 126 --IEKVIAEFTRVSRKQVGFIAMGKPD 150 (226)
T ss_pred --HHHHHHHHHHHhcCceEEEEeCCCC
Confidence 5789999999998765 44445554
No 17
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.76 E-value=0.11 Score=41.45 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=60.4
Q ss_pred cceeeecCCchhHhHhhhcccc--ccccccccccccchhHHHHHHHh---hceeeeeeecCCCCCCCCCccEEEeccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEE--TEAWGVEPYDIEDADARCKSLVH---KGIVRVADIKFPLPYRAKSFPLVIVSDALD 176 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~--tEAWGVEPydied~d~~CKsLvr---KGiVRvADIkfpLPYR~kSFslVivSDaLD 176 (271)
..||.+|..+-.....+++... .+..|+|+-+ +.-..|+.... +--+...|+. .+|+...+|++|+.+..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence 4799999988777666665544 3677776521 22233333221 1234456664 4667788999999988876
Q ss_pred ccChhhhcccccchhh-cccCceEEEecC
Q 024173 177 YLSPKYLNKTLPDLAR-VASDGVLIFAGY 204 (271)
Q Consensus 177 yLspryLNkTLPeLaR-vsadglViF~G~ 204 (271)
++.. +-..|-++.+ +..+|.+++.++
T Consensus 118 ~~~~--~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 NVTD--IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred Cccc--HHHHHHHHHHHcCCCcEEEEEEe
Confidence 6542 2234444444 356888888774
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=94.70 E-value=0.33 Score=41.70 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=94.1
Q ss_pred cchHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhc---cccccccccccccccchhHHHHHHHhh-ce-----ee
Q 024173 81 SCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLK---EEETEAWGVEPYDIEDADARCKSLVHK-GI-----VR 151 (271)
Q Consensus 81 sct~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLk---Ee~tEAWGVEPydied~d~~CKsLvrK-Gi-----VR 151 (271)
-|-.++++.+-.+-+.+-..-.+||.||-.|-.....|++ ....+.+|||+.+ +.-..|+..+.+ |. +.
T Consensus 37 p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~~ 114 (247)
T PRK15451 37 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVI 114 (247)
T ss_pred CChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEE
Confidence 3666776666555555443446799999999877666654 3567899998743 222333333321 21 23
Q ss_pred eeeecCCCCCCCCCccEEEecccccccChhhhcccccchhhcc-cCceEEEec-CCCchhhhHHhhhhcCCccccccchh
Q 024173 152 VADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG-YPGQQRAKVAELSKFGRPAKMRSSSW 229 (271)
Q Consensus 152 vADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF~G-~PgqqrakvaelskfgrpaK~rsssW 229 (271)
.+|+. .+|. ..|++||++-+|.+++|....+.+.++.|+- .+|.++++. +..+. ..+.++ .-..
T Consensus 115 ~~d~~-~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~-~~~~~~----------~~~~ 180 (247)
T PRK15451 115 EGDIR-DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED-AKVGEL----------LFNM 180 (247)
T ss_pred eCChh-hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCc-chhHHH----------HHHH
Confidence 45542 2343 3589999999999999988888999999874 567777775 44333 112211 1224
Q ss_pred HHHHHHHhccccchHHHH
Q 024173 230 WIRYFVQTSLEENEPAVK 247 (271)
Q Consensus 230 W~r~F~qt~LeEnE~a~K 247 (271)
|.+|-.+.|..|.|-+.|
T Consensus 181 ~~~~~~~~g~s~~ei~~~ 198 (247)
T PRK15451 181 HHDFKRANGYSELEISQK 198 (247)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 666666778877766543
No 19
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.69 E-value=0.26 Score=45.42 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=81.8
Q ss_pred ccceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHH------hhceeeeeeecCCCCCCCCCccEEEec
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLV------HKGIVRVADIKFPLPYRAKSFPLVIVS 172 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLv------rKGiVRvADIkfpLPYR~kSFslVivS 172 (271)
-.+||.+|=.|-.+--.|.+. ..+..|++..+ ++.+..+.+... ...-..+.|+... ..+|++|+..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~ 219 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCL 219 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEc
Confidence 458999999998887777764 45777776654 333444444331 1112345666432 5789999999
Q ss_pred ccccccChhhhcccccchhhcccCceEEEecCCCchh----hhHHhhhhcCCccc-----cccchhHHHHHHHhcccc
Q 024173 173 DALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQR----AKVAELSKFGRPAK-----MRSSSWWIRYFVQTSLEE 241 (271)
Q Consensus 173 DaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqr----akvaelskfgrpaK-----~rsssWW~r~F~qt~LeE 241 (271)
|.|-|+...-+.+-+-.++++.. |.+|++-.|...- .++.+ .|+.|.+ +.+...+.+.+.+.|++-
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~l~~-g~liIs~~p~~~~~~~l~~~g~--~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLASLAE-KRLIISFAPKTLYYDILKRIGE--LFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred CEEEecCHHHHHHHHHHHHhhcC-CEEEEEeCCcchHHHHHHHHHh--hcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 99998877666667777787765 4445554554321 11222 2444322 335667777777777664
No 20
>PRK06202 hypothetical protein; Provisional
Probab=94.55 E-value=0.068 Score=44.79 Aligned_cols=100 Identities=22% Similarity=0.164 Sum_probs=66.6
Q ss_pred ccccceeeecCCchhHhHhhhcc-----ccccccccccccccchhHHHHHHHh-hc-eeeeeeecCCCCCCCCCccEEEe
Q 024173 99 DSMHKVLHVGPDTCSVVSTLLKE-----EETEAWGVEPYDIEDADARCKSLVH-KG-IVRVADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 99 dsM~kVLHVGPdtC~VVs~LLkE-----e~tEAWGVEPydied~d~~CKsLvr-KG-iVRvADIkfpLPYR~kSFslViv 171 (271)
+.-.+||-+|-.|-.+...|.+. ...+..|||+.+ +.-..++.... .+ -+++.|.. -+|....+|++|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~-~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTFRQAVSD-ELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeEEEEecc-cccccCCCccEEEE
Confidence 34468999999998765555432 124788888754 33333333322 12 23444432 12334689999999
Q ss_pred cccccccChhhhcccccchhhcccCceEEE
Q 024173 172 SDALDYLSPKYLNKTLPDLARVASDGVLIF 201 (271)
Q Consensus 172 SDaLDyLspryLNkTLPeLaRvsadglViF 201 (271)
+++|.|+++..+.+.|-++.|+...+++|.
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcCeeEEEe
Confidence 999999999999999999999998545444
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.39 E-value=0.15 Score=47.31 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=83.3
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHh----hceeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH----KGIVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvr----KGiVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
.+||-||-.+-...-.|.++-+.+..||++.+ ++-..++.-.. +--+..+|+. -+|+...+|++|+..+++.|
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCT-KKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcc-cCCCCCCCEEEEEECCcccc
Confidence 47999999987666566665567889998863 23233332221 1124457754 35666789999999999999
Q ss_pred cChhhhcccccchhhcc-cCceEEEecC------CCchhhhHHhhhhcCCccccccchhHHHHHHHhccccc
Q 024173 178 LSPKYLNKTLPDLARVA-SDGVLIFAGY------PGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 242 (271)
Q Consensus 178 LspryLNkTLPeLaRvs-adglViF~G~------PgqqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEn 242 (271)
+..+ -+.|.++.|+- .+|.++++.+ |+.... ..+.+.|. .+.+...|.+.+.++|++.-
T Consensus 345 ~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~g~--~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 345 IQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA--EYIKQRGY--DLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred cCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH--HHHHhcCC--CCCCHHHHHHHHHHCCCeee
Confidence 8532 25677888864 5677766632 222211 12333342 46777888888888887743
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=94.35 E-value=0.2 Score=46.14 Aligned_cols=133 Identities=20% Similarity=0.181 Sum_probs=80.1
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccchh-HHHHHHH-hhceee--eeeecCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDAD-ARCKSLV-HKGIVR--VADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d-~~CKsLv-rKGiVR--vADIkfpLPYR~kSFslVivSDaLDy 177 (271)
++||-||=.|-.....++++......||+|.+.--.. ..++... ..+.+. ..|+. -+|.. .+|++|+...+|.|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCC-CCcCEEEEcchhhc
Confidence 5899999999998888888876679999998732111 1122222 122222 23332 13332 48999999999999
Q ss_pred cChhhhcccccchhhc-ccCceEEEec--CCCchhhhHHhhhhcCCccccc------cchhHHHHHHHhcccc
Q 024173 178 LSPKYLNKTLPDLARV-ASDGVLIFAG--YPGQQRAKVAELSKFGRPAKMR------SSSWWIRYFVQTSLEE 241 (271)
Q Consensus 178 LspryLNkTLPeLaRv-sadglViF~G--~PgqqrakvaelskfgrpaK~r------sssWW~r~F~qt~LeE 241 (271)
+ +.....|-++.|+ ..+|.+|+.- ..|..... +.-.+|-+||+ |.....+.+.++|++.
T Consensus 201 ~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~---l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 201 R--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTV---LVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred c--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccc---cCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 7 3446788899985 4577877653 22221110 01112334443 5566667777777654
No 23
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.14 E-value=0.44 Score=38.92 Aligned_cols=95 Identities=20% Similarity=0.295 Sum_probs=59.5
Q ss_pred cceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhce--eee--eeec-CCCCCCCCCccEEEeccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI--VRV--ADIK-FPLPYRAKSFPLVIVSDA 174 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi--VRv--ADIk-fpLPYR~kSFslVivSDa 174 (271)
.+||.+|..+-.....+.+. ..+..|+|+-. ++.+..+ +.+.|+ +++ +|+. ++.+. +.+|.+|+.++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~---~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLH---AKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHH---HHHcCCCceEEEeCCHHHhhcCC-CCCccEEEehhH
Confidence 48999999998877666654 34577777632 2222222 333444 443 3432 33333 578999999999
Q ss_pred ccccChhhhcccccchhhc-ccCceEEEec
Q 024173 175 LDYLSPKYLNKTLPDLARV-ASDGVLIFAG 203 (271)
Q Consensus 175 LDyLspryLNkTLPeLaRv-sadglViF~G 203 (271)
+.+... ....|.++.++ ..+|.++++.
T Consensus 122 l~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVPD--PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 988753 34677777665 5667777665
No 24
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=94.11 E-value=0.11 Score=34.15 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=59.6
Q ss_pred ceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHH-----hhceeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 103 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV-----HKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 103 kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLv-----rKGiVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
++|++|..+-.....+++....+.+|+|+-+ ++-..++... .+--+...|+.-+.+....+|++|++...+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4789999988877777775677888887532 1111222111 22233445665555446778999999998877
Q ss_pred cChhhhcccccchhh-cccCceEEEe
Q 024173 178 LSPKYLNKTLPDLAR-VASDGVLIFA 202 (271)
Q Consensus 178 LspryLNkTLPeLaR-vsadglViF~ 202 (271)
. +......+-.+.+ +..+|+++++
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 3344444444333 4678888876
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=93.73 E-value=0.27 Score=40.93 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=80.1
Q ss_pred cchHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhh-ce---eeeeeec
Q 024173 81 SCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI---VRVADIK 156 (271)
Q Consensus 81 sct~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-Gi---VRvADIk 156 (271)
.=..++.++++.++ -.+||-+|-.+.....-|.+. ..+..||++.+ ++-..++...++ |+ ..++|+.
T Consensus 17 ~~~~~l~~~~~~~~------~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~ 87 (195)
T TIGR00477 17 TTHSAVREAVKTVA------PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDIN 87 (195)
T ss_pred CchHHHHHHhccCC------CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccch
Confidence 33457777777654 248999999999877766654 45666665542 233344443332 32 3455764
Q ss_pred CCCCCCCCCccEEEecccccccChhhhcccccchhhc-ccCce-EEEec---------CCCchhhhHHhhhhcCC
Q 024173 157 FPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGV-LIFAG---------YPGQQRAKVAELSKFGR 220 (271)
Q Consensus 157 fpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRv-sadgl-ViF~G---------~Pgqqrakvaelskfgr 220 (271)
.+|+ +++|++|+.+..+-++++..+-+.+-++.|+ ..+|+ +|+.. .|.+-+.+-.||.+.-+
T Consensus 88 -~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 88 -AAAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA 160 (195)
T ss_pred -hccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC
Confidence 2333 3689999999999999887777778888775 55675 44432 12344555555554443
No 26
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=93.70 E-value=0.041 Score=39.71 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=47.0
Q ss_pred eeecCCchhHhHhhhcc-cccccccccccc--ccchhHHHHHHHhhce--eeeeeecCCCCCCCCCccEEEecccccccC
Q 024173 105 LHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLS 179 (271)
Q Consensus 105 LHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLvrKGi--VRvADIkfpLPYR~kSFslVivSDaLDyLs 179 (271)
|-||+.|......|+++ ...+-.|+++.. ++.+...-+..-.... ++..+.....+.-.++|++|+.++.|.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 57899999999998877 577778887654 5555555555444332 33333333333334799999999999999
Q ss_pred hhhhcccccchhhcccC
Q 024173 180 PKYLNKTLPDLARVASD 196 (271)
Q Consensus 180 pryLNkTLPeLaRvsad 196 (271)
+.+...|-.+.++-+.
T Consensus 80 -~~~~~~l~~~~~~L~p 95 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKP 95 (99)
T ss_dssp -S-HHHHHHHHTTT-TS
T ss_pred -hhHHHHHHHHHHHcCC
Confidence 4444555555554433
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.23 E-value=0.58 Score=43.26 Aligned_cols=95 Identities=12% Similarity=0.158 Sum_probs=61.9
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhh-c-----eeeeeeecCCCCCCCCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-G-----IVRVADIKFPLPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-G-----iVRvADIkfpLPYR~kSFslVivSDaL 175 (271)
.+||-||-.+-.... .|.+.+.+.+|||+.+ +.-..++.-.+. + -+..+|+. .||....+|++|+..+.|
T Consensus 133 ~~ILDIGCG~G~~s~-~La~~g~~V~GID~s~--~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 133 LKFIDIGCGGGLLSE-PLARMGATVTGVDAVD--KNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CEEEEeeCCCCHHHH-HHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHH
Confidence 379999999887644 4445567899999874 111222222221 1 13344442 355567899999999999
Q ss_pred cccChhhhcccccchhhcc-cCceEEEe
Q 024173 176 DYLSPKYLNKTLPDLARVA-SDGVLIFA 202 (271)
Q Consensus 176 DyLspryLNkTLPeLaRvs-adglViF~ 202 (271)
+++... ...|.+++|+- .+|.++++
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEE
Confidence 999753 57888998875 55655555
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=92.14 E-value=0.92 Score=38.34 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=65.1
Q ss_pred ccccceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 99 DSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 99 dsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
+.-.+||.+|-.+..+...|.+.- ..+..|||+.+ +.-..++....+--+..+|+.-..| ..+|++|+.+.+|+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhh
Confidence 334689999999998876666542 56889998864 2222333323223356678753222 458999999999999
Q ss_pred cChhhhcccccchhhcc-cCceEEEec
Q 024173 178 LSPKYLNKTLPDLARVA-SDGVLIFAG 203 (271)
Q Consensus 178 LspryLNkTLPeLaRvs-adglViF~G 203 (271)
+.. .-+.|.++.|+- .+|.+++..
T Consensus 106 ~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 106 LPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 853 235677777764 477777754
No 29
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=91.71 E-value=0.67 Score=38.47 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=57.8
Q ss_pred ccceeeecCCchhHhHhhhccccccccccccc--cccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEeccccccc
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 178 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyL 178 (271)
-.+||.+|..+=.....+.+. ..+.+|+|+- -++-+..++.......-+...|+.--+.-....|++||.+..+.+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 457999999886655555554 4568888762 1222222222211111233344432222345789999999999987
Q ss_pred Chhhhcccccchhhc-ccCceEEEecCC
Q 024173 179 SPKYLNKTLPDLARV-ASDGVLIFAGYP 205 (271)
Q Consensus 179 spryLNkTLPeLaRv-sadglViF~G~P 205 (271)
.. ....|-.+.|+ ..+|.++|+...
T Consensus 128 ~~--~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 128 PD--PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CC--HHHHHHHHHHHcCCCcEEEEEecC
Confidence 42 23444444444 567888877643
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=91.70 E-value=0.61 Score=38.87 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=71.8
Q ss_pred chHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhh-ce----eeeeeec
Q 024173 82 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI----VRVADIK 156 (271)
Q Consensus 82 ct~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-Gi----VRvADIk 156 (271)
-+.++.+.++.++ -.+||-+|=.+......|.+ ...+..||++.+ ++-..++.+.++ |+ +.++|+.
T Consensus 18 ~~~~l~~~l~~~~------~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~~ 88 (197)
T PRK11207 18 THSEVLEAVKVVK------PGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDLN 88 (197)
T ss_pred ChHHHHHhcccCC------CCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecChh
Confidence 4556666666442 26899999998876656655 456778886643 344455555543 22 3457774
Q ss_pred CCCCCCCCCccEEEecccccccChhhhcccccchhhc-ccCceEEE
Q 024173 157 FPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGVLIF 201 (271)
Q Consensus 157 fpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRv-sadglViF 201 (271)
.+++ +++|++|+.+.++-|++|..+-+.+-+++|+ ..+|.+++
T Consensus 89 -~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 89 -NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2344 4679999999999999987777777777775 45676443
No 31
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=91.43 E-value=0.6 Score=43.77 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=76.7
Q ss_pred cceeeecCCchhHhHhhhcc-ccccccccccccccchhHHHHHHHh-hc-eeeeeeecCCCCCCCCCccEEEeccccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVH-KG-IVRVADIKFPLPYRAKSFPLVIVSDALDYL 178 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPydied~d~~CKsLvr-KG-iVRvADIkfpLPYR~kSFslVivSDaLDyL 178 (271)
.+||.||..|=.+...+.+. .+.+..||++-+ +.-..++.... ++ -+...|+. .+|+...+|++||.+++|.|+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECKIIEGDAE-DLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccCCeEEeccHH-hCCCCCCceeEEEEcChhhhC
Confidence 47999999985544444443 345677877632 11112222111 11 13445654 367778899999999999987
Q ss_pred Chhhhcccccchhhc-ccCceEEEecCCCchhhhHHhhhhcCCc--cccccchhHHHHHHHhccccch
Q 024173 179 SPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAELSKFGRP--AKMRSSSWWIRYFVQTSLEENE 243 (271)
Q Consensus 179 spryLNkTLPeLaRv-sadglViF~G~Pgqqrakvaelskfgrp--aK~rsssWW~r~F~qt~LeEnE 243 (271)
... .++|-++.|+ ..+|.+++++..... .. ++++-.. ....+...|.+.+.++|+++-+
T Consensus 192 ~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~-~~---~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 192 PDP--QRGIKEAYRVLKIGGKACLIGPVHPT-FW---LSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred CCH--HHHHHHHHHhcCCCcEEEEEEecCcc-hh---HHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 644 3678888886 557888887632111 00 1111001 0123556777777777777543
No 32
>PRK08317 hypothetical protein; Provisional
Probab=91.41 E-value=0.94 Score=36.16 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=61.3
Q ss_pred cceeeecCCchhHhHhhhcc--cccccccccccc--ccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
.+||.+|..+-.....+.+. ...+..|+++-+ ++.+..+....-.+--+..+|+. .+|+...+|++|+...++.+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhhc
Confidence 47999999997665555543 245788888743 22232221111122234556763 35667789999999999999
Q ss_pred cChhhhcccccchhhc-ccCceEEEec
Q 024173 178 LSPKYLNKTLPDLARV-ASDGVLIFAG 203 (271)
Q Consensus 178 LspryLNkTLPeLaRv-sadglViF~G 203 (271)
+.- ....+.++.|+ ..+|.+++..
T Consensus 100 ~~~--~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 100 LED--PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cCC--HHHHHHHHHHHhcCCcEEEEEe
Confidence 853 34556666664 4567666654
No 33
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=91.40 E-value=0.49 Score=39.09 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=63.3
Q ss_pred cceeeecCCchhHhHhhhcc--cccccccccccc--ccchhHHHHHHHhhc-eeeeeeecCCCCCCCCCccEEEeccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALD 176 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaLD 176 (271)
.+||-+|-.|......|.+. ...+..|||+.+ ++-+..+++..--.. -+..+|+. .+|+...+|++|+.+..+.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCCCCCCccEEEEecccc
Confidence 47999999999987777664 356789998753 222334443221111 12345652 3566678999999999888
Q ss_pred ccChhhhcccccchhhccc-CceEEEe
Q 024173 177 YLSPKYLNKTLPDLARVAS-DGVLIFA 202 (271)
Q Consensus 177 yLspryLNkTLPeLaRvsa-dglViF~ 202 (271)
+++. ..+.|-++.|+-. +|.+++.
T Consensus 126 ~~~~--~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 126 NVPD--YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred cCCC--HHHHHHHHHHHcCcCeEEEEE
Confidence 8753 2467778777644 5666653
No 34
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.37 E-value=1.3 Score=38.79 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=75.0
Q ss_pred ccchHHHHhHhHHHHHHhcc------------------------cccceeeecCCchhHhHhhhcc--cccccccccccc
Q 024173 80 FSCTSEIQRAIPILKKAYGD------------------------SMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD 133 (271)
Q Consensus 80 ~sct~eV~~AiP~LkkaYGd------------------------sM~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd 133 (271)
.+|+.+|++...-.-+.|-. .-.+||-||=.|-.+.-.|.+. ...+.+|||+.+
T Consensus 29 ~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 29 VKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred hhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 56777777665555555531 1236889988888755444432 245789998764
Q ss_pred --ccchhHHHHHHHhh---ce-eeeeeecCCCCCCCCCccEEEecccccccChhhhcccccchhhcccC-ceEEEec
Q 024173 134 --IEDADARCKSLVHK---GI-VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASD-GVLIFAG 203 (271)
Q Consensus 134 --ied~d~~CKsLvrK---Gi-VRvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsad-glViF~G 203 (271)
++-+..+....... .+ +..+|+ ..||+...||++|+.+.+|.++. -..+.|-|+.||-.. |.++++-
T Consensus 109 ~ml~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 109 EQLAVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred HHHHHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEE
Confidence 22222211100011 11 345665 35788888999999999998885 356789999998765 5555554
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=91.15 E-value=0.68 Score=37.41 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=58.7
Q ss_pred cceeeecCCchhHhHhhhccc--cccccccccc--cccchhHHHHH--HHhhceeeeeeecCCCCCCCCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPY--DIEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe--~tEAWGVEPy--died~d~~CKs--LvrKGiVRvADIkfpLPYR~kSFslVivSDaL 175 (271)
..||.+|..+=.....+++.. ..+..|+|+- -++.+..+++. +-..-.+...|+. .+|+...+|++|+.+..|
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 579999988855444444433 3677888763 23334444332 1111234445664 355666789999998888
Q ss_pred cccChhhhcccccchhh-cccCceEEEec
Q 024173 176 DYLSPKYLNKTLPDLAR-VASDGVLIFAG 203 (271)
Q Consensus 176 DyLspryLNkTLPeLaR-vsadglViF~G 203 (271)
.++.. +...|-++.+ +..+|.+++..
T Consensus 132 ~~~~~--~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVPD--IDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCC--HHHHHHHHHHhccCCcEEEEEE
Confidence 76643 3344445444 46688888765
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.54 E-value=0.28 Score=35.47 Aligned_cols=100 Identities=24% Similarity=0.263 Sum_probs=62.5
Q ss_pred cceeeecCCchhHhHhhhc-ccccccccccccc--ccchhHHHHH--HHhhceeeeeeecCCCCCCCCCccEEEecc-cc
Q 024173 102 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSD-AL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLk-Ee~tEAWGVEPyd--ied~d~~CKs--LvrKGiVRvADIkfpLPYR~kSFslVivSD-aL 175 (271)
.+||.+|-.|=...-.|++ ....+..|||+.+ ++-+..+.+. +-.+=-+..+|+ ...+--...|++|+.+. .+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcc
Confidence 4799999999888888888 4788899998743 2333333311 112222566888 44444555599999999 66
Q ss_pred cccCh-hhhcccccchh-hcccCceEEEe
Q 024173 176 DYLSP-KYLNKTLPDLA-RVASDGVLIFA 202 (271)
Q Consensus 176 DyLsp-ryLNkTLPeLa-RvsadglViF~ 202 (271)
+.+-+ ...-+.|-.+. ++..+|+++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 64444 23333444444 34567777664
No 37
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=90.24 E-value=1.4 Score=40.23 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=67.0
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccchhH--HHHHHHhh--ceeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADA--RCKSLVHK--GIVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~--~CKsLvrK--GiVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
++||-||-.+-.....+++.......||+|....-... ..+.+-.. --+..+|+. .+|+ ..+|++|+...+|.|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC-cCCcCEEEECChhhc
Confidence 68999999999988888887666799999887533221 11111111 123344553 4577 889999999999988
Q ss_pred cChhhhcccccchhhc-ccCceEEEec
Q 024173 178 LSPKYLNKTLPDLARV-ASDGVLIFAG 203 (271)
Q Consensus 178 LspryLNkTLPeLaRv-sadglViF~G 203 (271)
+. -....|-++.|+ ..+|.+||..
T Consensus 202 ~~--dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 202 RR--SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 64 234567788876 5678888764
No 38
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=89.94 E-value=1.4 Score=36.59 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=54.8
Q ss_pred ccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHH-hhce----eeeeeecCCCCCCCCCccEEEecccc
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV-HKGI----VRVADIKFPLPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLv-rKGi----VRvADIkfpLPYR~kSFslVivSDaL 175 (271)
-.+||.||..|-.... +|.+-..+..|||.. ++.-..++.-. +-|+ +...|..-++| ..++|++|++.-+.
T Consensus 79 ~~~VLeiG~GsG~~t~-~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAA-VLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAA 154 (212)
T ss_pred CCEEEEECCCccHHHH-HHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCc
Confidence 3589999999877544 333333467888866 33333333322 2244 23344433333 13689999998777
Q ss_pred cccChhhhcccccchhhcccCceEEEecC-CCch
Q 024173 176 DYLSPKYLNKTLPDLARVASDGVLIFAGY-PGQQ 208 (271)
Q Consensus 176 DyLspryLNkTLPeLaRvsadglViF~G~-Pgqq 208 (271)
.++..+ + +..+...|++++.=. .++|
T Consensus 155 ~~~~~~-l------~~~L~~gG~lv~~~~~~~~~ 181 (212)
T PRK00312 155 PEIPRA-L------LEQLKEGGILVAPVGGEEQQ 181 (212)
T ss_pred hhhhHH-H------HHhcCCCcEEEEEEcCCCce
Confidence 766332 2 234667887766543 4444
No 39
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=89.35 E-value=0.61 Score=39.12 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=83.5
Q ss_pred hHhHHHHHHhcccccceeeecCCchhHhHhhhcc-cccccccccccc--ccchhHHHHHHH-hhceeeeeee-c-CCCCC
Q 024173 88 RAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADI-K-FPLPY 161 (271)
Q Consensus 88 ~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLv-rKGiVRvADI-k-fpLPY 161 (271)
...+-..+.+++.-.+||-+|-.|-.....|.+. ...+.+|||+.+ ++.+..+++..- ..--+..+|+ . ++..+
T Consensus 28 ~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 28 PAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence 4455567888888899999999999888877654 356899999876 444555554321 1112456777 2 33226
Q ss_pred CCCCccEEEecccccccC-hhhh-----cccccchhhc-ccCceEEEec-CCCchhhhHHhhhhcCCccc
Q 024173 162 RAKSFPLVIVSDALDYLS-PKYL-----NKTLPDLARV-ASDGVLIFAG-YPGQQRAKVAELSKFGRPAK 223 (271)
Q Consensus 162 R~kSFslVivSDaLDyLs-pryL-----NkTLPeLaRv-sadglViF~G-~PgqqrakvaelskfgrpaK 223 (271)
...+|++|++.-...+.. +.+. ...|-++.|+ ..+|.++++- .+.+.+.-...+.+.|-...
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 678899998643222211 1222 2245555654 4578887765 55556555666666664443
No 40
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=88.46 E-value=0.31 Score=35.67 Aligned_cols=90 Identities=28% Similarity=0.347 Sum_probs=60.8
Q ss_pred eeeecCCchhHhHhhhccc----cccccccccccccchhHHHHHHHh-hc---eeeeeeecCCCCCCCCCccEEEeccc-
Q 024173 104 VLHVGPDTCSVVSTLLKEE----ETEAWGVEPYDIEDADARCKSLVH-KG---IVRVADIKFPLPYRAKSFPLVIVSDA- 174 (271)
Q Consensus 104 VLHVGPdtC~VVs~LLkEe----~tEAWGVEPydied~d~~CKsLvr-KG---iVRvADIkfpLPYR~kSFslVivSDa- 174 (271)
||-+|..+-.+...|++-- +...+||+.-. ++=..|+...+ .| -..++|+.. ||+...+|++|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 5667777777766666442 36778876431 23344555553 23 457788866 8888889999999766
Q ss_pred ccccChhhhcccccchhhcccC
Q 024173 175 LDYLSPKYLNKTLPDLARVASD 196 (271)
Q Consensus 175 LDyLspryLNkTLPeLaRvsad 196 (271)
++|++|.-+.+-|=+++++...
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999998888888887653
No 41
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=87.66 E-value=1.7 Score=31.46 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=56.3
Q ss_pred ccceeeecCCchhHhHhhhcc-cccccccccccc--ccchhHHHHHHH-hhceeeeeeecCCCCCCCCCccEEEeccccc
Q 024173 101 MHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALD 176 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLv-rKGiVRvADIkfpLPYR~kSFslVivSDaLD 176 (271)
-.+||-+|..+=.....+++. .+.+.+|+|+.+ ++-+..+++.+- .+=-+...|+...+++=.++|+.|+.....+
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999986666666665 247889999743 222334444331 1112223454433444446899998865432
Q ss_pred ccChhhhcccccchhhc-ccCceEEEecC
Q 024173 177 YLSPKYLNKTLPDLARV-ASDGVLIFAGY 204 (271)
Q Consensus 177 yLspryLNkTLPeLaRv-sadglViF~G~ 204 (271)
-+.+.+.++.|+ ..+|.++++.+
T Consensus 100 -----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 100 -----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred -----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 223455555554 45778777653
No 42
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=87.56 E-value=4.1 Score=33.65 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=41.5
Q ss_pred cceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHHh-hce----eeeeeecCCCCCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH-KGI----VRVADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvr-KGi----VRvADIkfpLPYR~kSFslViv 171 (271)
.+||-+|..+......+.+.- ..+..|+|... ++-..|+..++ .|+ +..+|+.-++| ..+|++||.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~ 160 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVS 160 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEE
Confidence 489999999999888888653 45777887542 22333333332 232 44566643443 578999875
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=87.18 E-value=1.1 Score=39.55 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=70.2
Q ss_pred chHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhh-ce---eeeeeecC
Q 024173 82 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI---VRVADIKF 157 (271)
Q Consensus 82 ct~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrK-Gi---VRvADIkf 157 (271)
-..++..+++.++. .+||.+|=.+.....-|.+. ..+..|||.-. ++-..++...++ |+ +.+.|+.-
T Consensus 108 ~~~~~~~~~~~~~~------~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~ 178 (287)
T PRK12335 108 THSEVLEAVQTVKP------GKALDLGCGQGRNSLYLALL-GFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINS 178 (287)
T ss_pred ccHHHHHHhhccCC------CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhc
Confidence 35567777665431 38999999999877777664 45666665432 222334444332 33 34456643
Q ss_pred CCCCCCCCccEEEecccccccChhhhcccccchhhcc-cCceEEE
Q 024173 158 PLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIF 201 (271)
Q Consensus 158 pLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF 201 (271)
+-. ..+|++|+.+.+|-|+++..+.+-+-++.|+- .+|++++
T Consensus 179 ~~~--~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 179 ASI--QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ccc--cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 222 67899999999999999877777777776654 5676444
No 44
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=86.31 E-value=4.4 Score=35.22 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=63.5
Q ss_pred HHHHHHhcccccceeeecCCchhHhHhhhccc----cccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCc
Q 024173 91 PILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE----ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSF 166 (271)
Q Consensus 91 P~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe----~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSF 166 (271)
-.|.+.....-.+||.+|-.|-.....|.+.- ..+..|||+..- +=...+.-...--+.++|+. .||+...||
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~--~l~~A~~~~~~~~~~~~d~~-~lp~~~~sf 152 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV--AIKYAAKRYPQVTFCVASSH-RLPFADQSL 152 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHH--HHHHHHHhCCCCeEEEeecc-cCCCcCCce
Confidence 34444444444679999999999877776432 125688887531 11111111111125678875 578888999
Q ss_pred cEEEecccccccChhhhcccccchhhcc-cCceEEEecCCCc
Q 024173 167 PLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAGYPGQ 207 (271)
Q Consensus 167 slVivSDaLDyLspryLNkTLPeLaRvs-adglViF~G~Pgq 207 (271)
++|+... +|.. +.|+.|+= .+|.+|+.. ||+
T Consensus 153 D~I~~~~-----~~~~----~~e~~rvLkpgG~li~~~-p~~ 184 (272)
T PRK11088 153 DAIIRIY-----APCK----AEELARVVKPGGIVITVT-PGP 184 (272)
T ss_pred eEEEEec-----CCCC----HHHHHhhccCCCEEEEEe-CCC
Confidence 9998654 3543 57888874 467777764 554
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=85.17 E-value=2.6 Score=34.23 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=53.7
Q ss_pred cceeeecCCchhHhHhhhccc-ccccccccccc--ccchhHHHHHHHhhc-eeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
.+||-+|..|-.+...+.+.. ..+..|||+.. ++-+..|++..--.. -+...|+..++ ..+|++|+......+
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~---~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL---PGKADAIFIGGSGGN 109 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc---CcCCCEEEECCCccC
Confidence 379999999987776666543 35778888753 233444443221011 12334654333 268999987654443
Q ss_pred cChhhhcccccchhh-cccCceEEEec
Q 024173 178 LSPKYLNKTLPDLAR-VASDGVLIFAG 203 (271)
Q Consensus 178 LspryLNkTLPeLaR-vsadglViF~G 203 (271)
+ ...+.++.| +..+|.+++..
T Consensus 110 ~-----~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 110 L-----TAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred H-----HHHHHHHHHhcCCCeEEEEEE
Confidence 3 333444333 45778877754
No 46
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=85.09 E-value=1.9 Score=37.84 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=62.0
Q ss_pred chHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHHhh--ce-------ee
Q 024173 82 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK--GI-------VR 151 (271)
Q Consensus 82 ct~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrK--Gi-------VR 151 (271)
+--|.+-.+|.+... .-++||.+|..+..+...+++.. ..+.-+||.-+ ++-..|+....+ |. +.
T Consensus 57 ~y~e~l~~~~l~~~~---~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~~~~~~~~~~v~i~ 131 (270)
T TIGR00417 57 IYHEMIAHVPLFTHP---NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPSLAGSYDDPRVDLQ 131 (270)
T ss_pred HHHHHhhhhHhhcCC---CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHhhcccccCCceEEE
Confidence 344555566666432 23499999999999888888764 22333333310 122334332211 11 22
Q ss_pred eeeecCCCCCCCCCccEEEecccccccChh---hhcccccch-hhcccCceEEEec-CCCch
Q 024173 152 VADIKFPLPYRAKSFPLVIVSDALDYLSPK---YLNKTLPDL-ARVASDGVLIFAG-YPGQQ 208 (271)
Q Consensus 152 vADIkfpLPYR~kSFslVivSDaLDyLspr---yLNkTLPeL-aRvsadglViF~G-~Pgqq 208 (271)
++|----|....+.|++||+ |.-|...|. |....+-.+ .++..+|++++.. .|-.+
T Consensus 132 ~~D~~~~l~~~~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~ 192 (270)
T TIGR00417 132 IDDGFKFLADTENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQ 192 (270)
T ss_pred ECchHHHHHhCCCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccC
Confidence 23421112223578998765 665443332 111112222 4578899998864 45544
No 47
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=84.58 E-value=3.1 Score=36.77 Aligned_cols=114 Identities=20% Similarity=0.254 Sum_probs=71.1
Q ss_pred hHhHHHHHHh-cccccceeeecCCchhH---hHhhhcccc--ccccccccccccchhHHHHHHHhhce------------
Q 024173 88 RAIPILKKAY-GDSMHKVLHVGPDTCSV---VSTLLKEEE--TEAWGVEPYDIEDADARCKSLVHKGI------------ 149 (271)
Q Consensus 88 ~AiP~LkkaY-GdsM~kVLHVGPdtC~V---Vs~LLkEe~--tEAWGVEPydied~d~~CKsLvrKGi------------ 149 (271)
..+|-|.+.= ...-.+||-+|=.|-.- ++-+|.|.. ...|+++-+ -.|.+..+-...++|+
T Consensus 86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~-g~Dis~~~L~~Ar~~~y~~~~~~~~~~~ 164 (264)
T smart00138 86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKIL-ATDIDLKALEKARAGIYPERELEDLPKA 164 (264)
T ss_pred HHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEE-EEECCHHHHHHHHcCCCCHHHHhcCCHH
Confidence 3467665431 22336899998777642 344444432 123443322 2244444444455553
Q ss_pred ----------------------e--eeeeecCCCCCCCCCccEEEecccccccChhhhcccccchhhcccCceEEEec
Q 024173 150 ----------------------V--RVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 203 (271)
Q Consensus 150 ----------------------V--RvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G 203 (271)
| ++.|+-- +|+...+|++|+..+.|-|+++....+.+.+++|+-.+|=+++.|
T Consensus 165 ~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 165 LLARYFSRVEDKYRVKPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHhhhEEeCCCeEEEChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 1 2345433 344567899999999999999999999999999988777667766
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=83.78 E-value=1.7 Score=33.94 Aligned_cols=113 Identities=23% Similarity=0.353 Sum_probs=74.7
Q ss_pred ccccceeeecCCchhHhHhhhcc--ccccccccccccccchhHHHHHHHh-hce----eeeeeecCCCC--CCCCCccEE
Q 024173 99 DSMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVH-KGI----VRVADIKFPLP--YRAKSFPLV 169 (271)
Q Consensus 99 dsM~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPydied~d~~CKsLvr-KGi----VRvADIkfpLP--YR~kSFslV 169 (271)
++-.+||.+|-.|-...-.|+++ ...+.+|||.-+ ++=..++...+ .|+ +.++|+.= +| |. ..|++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEE
Confidence 34578999999999999888853 256788887542 23344454433 344 35678766 77 76 999999
Q ss_pred EecccccccChhhhcccccchhhcccCceEEEecCCC---chhhhHHhhhh
Q 024173 170 IVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG---QQRAKVAELSK 217 (271)
Q Consensus 170 ivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pg---qqrakvaelsk 217 (271)
|...++.++... .+.|-.+.|+-.++-+++...+. +....+.|..+
T Consensus 78 ~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~ 126 (152)
T PF13847_consen 78 ISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMN 126 (152)
T ss_dssp EEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHH
T ss_pred EEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHH
Confidence 999999777643 46677888887766555555444 22244555544
No 49
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.16 E-value=0.96 Score=43.10 Aligned_cols=39 Identities=33% Similarity=0.639 Sum_probs=34.7
Q ss_pred CCCccEEEecccccccChhhhcccccchhhcccCc-eEEE
Q 024173 163 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG-VLIF 201 (271)
Q Consensus 163 ~kSFslVivSDaLDyLspryLNkTLPeLaRvsadg-lViF 201 (271)
+.||+.+|.||+.|||+|..+|..+-+|.|+.+.| -|++
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67899999999999999999999999999998765 4554
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=78.72 E-value=1.6 Score=39.26 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=56.8
Q ss_pred cceeeecCCchhHhHhhhccccccccccc--cccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccccC
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 179 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVE--Pydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLs 179 (271)
.++|-+|= .+++.+..|-.--.+--.++ |--|+-+...|..+= .=-+.++|+.-. +=...|+||++|..+-||+
T Consensus 45 ~~alEvGC-s~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~--~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 45 RRALEVGC-SIGVLTERLAPRCDRLLAVDISPRALARARERLAGLP-HVEWIQADVPEF--WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEE---TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT-----SS-EEEEEEES-GGGSS
T ss_pred ceeEecCC-CccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCC--CCCCCeeEEEEehHhHcCC
Confidence 45788884 34555555555444444443 333444555555541 112355666444 4478999999999999999
Q ss_pred h-hhhcccccchhh-cccCceEEEec
Q 024173 180 P-KYLNKTLPDLAR-VASDGVLIFAG 203 (271)
Q Consensus 180 p-ryLNkTLPeLaR-vsadglViF~G 203 (271)
+ .-|.+.+-.++. +..||.+||.-
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8 467766666654 88999999954
No 51
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=78.30 E-value=11 Score=31.74 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=57.1
Q ss_pred cceeeecCCchhHh---Hhhhcccccccccccccc--ccchhHHHHHHHhhce-----eeeeeecCCCCCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVV---STLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VV---s~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGi-----VRvADIkfpLPYR~kSFslViv 171 (271)
.+||.||-.|.... +++++ ...+.+|||..+ ++.+..+ +-+.|+ +..+|..-.+|- .++|+.|++
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~~---l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~ 148 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQN---IERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIV 148 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHH---HHHcCCCCcEEEEECCcccCCcc-CCCccEEEE
Confidence 47999999998855 44443 235788988763 2223333 334342 345777655553 468999999
Q ss_pred cccccccChhhhcccccchhhcccCceEEEec
Q 024173 172 SDALDYLSPKYLNKTLPDLARVASDGVLIFAG 203 (271)
Q Consensus 172 SDaLDyLspryLNkTLPeLaRvsadglViF~G 203 (271)
..++..+.+..+ ..+..+|.+++.-
T Consensus 149 ~~~~~~~~~~l~-------~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAASTIPSALV-------RQLKDGGVLVIPV 173 (205)
T ss_pred ccCcchhhHHHH-------HhcCcCcEEEEEE
Confidence 988887754322 3467788877744
No 52
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=78.15 E-value=6.9 Score=33.82 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=53.9
Q ss_pred cccceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 100 SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 100 sM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
.=.+||-+|-.|-...-.+.+....+..|++..+ ++-+..| +-+.|+ . .++. ++....+|++|+. +.+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n---~~~~~~-~-~~~~--~~~~~~~fD~Vva-ni~-- 188 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN---AELNGV-E-LNVY--LPQGDLKADVIVA-NIL-- 188 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH---HHHcCC-C-ceEE--EccCCCCcCEEEE-cCc--
Confidence 3368999999995444344444444577776532 2222222 223344 1 1122 2222237998865 332
Q ss_pred cChhhhcccccchhhc-ccCceEEEecCCCchhhh
Q 024173 178 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAK 211 (271)
Q Consensus 178 LspryLNkTLPeLaRv-sadglViF~G~Pgqqrak 211 (271)
..-+-+.+|++.|+ ..+|.+|++|.--.+...
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~ 221 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILEEQADE 221 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHH
Confidence 22234557777665 458999999865444333
No 53
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=78.14 E-value=8.9 Score=32.56 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=55.6
Q ss_pred cceeeecCCchhHhHhhhcc--cccccccccccc--ccchhHHHHHHHhhce----eeeeeecCCCCCCCCCccEEEecc
Q 024173 102 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSD 173 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKGi----VRvADIkfpLPYR~kSFslVivSD 173 (271)
++||.||..|-+....|.+. .+....|||+.+ ++-+..+++. -|+ +..+|..-.+| -...|+.|+++-
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~---~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK---LGYDNVEVIVGDGTLGYE-ENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEECCcccCCC-cCCCcCEEEECC
Confidence 58999999998876544433 346889999863 2223344443 243 44556543332 236799999987
Q ss_pred cccccChhhhcccccchhhcccCceEEEe
Q 024173 174 ALDYLSPKYLNKTLPDLARVASDGVLIFA 202 (271)
Q Consensus 174 aLDyLspryLNkTLPeLaRvsadglViF~ 202 (271)
+...+.+.++ ..+..+|.+++.
T Consensus 154 ~~~~~~~~l~-------~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGPDIPKPLI-------EQLKDGGIMVIP 175 (212)
T ss_pred CcccchHHHH-------HhhCCCcEEEEE
Confidence 7765544332 246778876653
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=78.12 E-value=8.6 Score=36.13 Aligned_cols=107 Identities=17% Similarity=0.257 Sum_probs=67.9
Q ss_pred hHHHHHHhc-ccccceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhceeeeeeecCCCCCCCCCc
Q 024173 90 IPILKKAYG-DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSF 166 (271)
Q Consensus 90 iP~LkkaYG-dsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSF 166 (271)
+..+.+..+ +.=.+||-||-.+......+.+.-..+.-||+..+ ++-+..+|+.+ .--+...|..- + ..+|
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~-l---~~~f 229 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--PVEIRLQDYRD-L---NGQF 229 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC--eEEEEECchhh-c---CCCC
Confidence 444434343 34458999999888887777765556777776542 23333333211 00123344321 1 4789
Q ss_pred cEEEecccccccChhhhcccccchhhccc-CceEEEe
Q 024173 167 PLVIVSDALDYLSPKYLNKTLPDLARVAS-DGVLIFA 202 (271)
Q Consensus 167 slVivSDaLDyLspryLNkTLPeLaRvsa-dglViF~ 202 (271)
++|+...+++++.++++...+.++.|+=. +|.+++.
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999988888888888888754 5666664
No 55
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=75.76 E-value=7.4 Score=34.60 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred cceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhcee--eeeeecCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiV--RvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
.+||-+|-.|-...-.+.+-......||+..+ ++-+..|++.---...+ ...| .++.-..+|++|+. +.+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~---~~~~~~~~fDlVva-n~~-- 234 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY---LEQPIEGKADVIVA-NIL-- 234 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc---cccccCCCceEEEE-ecC--
Confidence 68999999996655555554445677776442 33344443321111112 2222 22333568999875 443
Q ss_pred cChhhhcccccchhhc-ccCceEEEecCCCchhhhHHh
Q 024173 178 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAE 214 (271)
Q Consensus 178 LspryLNkTLPeLaRv-sadglViF~G~Pgqqrakvae 214 (271)
..-+.+.++++.|+ ..+|.+|++|.-..|...+.+
T Consensus 235 --~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~ 270 (288)
T TIGR00406 235 --AEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCD 270 (288)
T ss_pred --HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence 22334567777665 567899999965555444443
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=75.00 E-value=10 Score=30.63 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=42.8
Q ss_pred cceeeecCCchhHhHhhhccccccccccccc--cccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaL 175 (271)
.+||-+|..+......+.+... +..|||.- -++-+..|++..-..--+..+|+-- .+ ..+|++||.....
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK-GV--RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc-cc--CCcccEEEECCCC
Confidence 4799999999987777776554 78888743 2344555665432222233356522 22 3489999876543
No 57
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=71.58 E-value=7.3 Score=31.37 Aligned_cols=118 Identities=24% Similarity=0.199 Sum_probs=67.6
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHh---hceeeeeee-cCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH---KGIVRVADI-KFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvr---KGiVRvADI-kfpLPYR~kSFslVivSDaLDy 177 (271)
..||-+||.+..+...|++. ....+|||.-. +.-..++.... +=-+..+|+ ++++| ..+|..| +||.-=+
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~--~~~~~~~~~~~~~~~v~ii~~D~~~~~~~--~~~~d~v-i~n~Py~ 88 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER-AARVTAIEIDP--RLAPRLREKFAAADNLTVIHGDALKFDLP--KLQPYKV-VGNLPYN 88 (169)
T ss_pred CEEEEECCCccHHHHHHHhc-CCeEEEEECCH--HHHHHHHHHhccCCCEEEEECchhcCCcc--ccCCCEE-EECCCcc
Confidence 47999999999999999877 57888888652 22222222221 112344554 23333 3457654 6776666
Q ss_pred cChhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhcCCccccccchhHH
Q 024173 178 LSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWI 231 (271)
Q Consensus 178 LspryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK~rsssWW~ 231 (271)
++..-+.+.+-+.. .-.+|+++| |.-..-+-++|.|-+-.-+-|-+|.
T Consensus 89 ~~~~~i~~~l~~~~-~~~~~~l~~-----q~e~a~rl~~~~~~~~y~~lsv~~~ 136 (169)
T smart00650 89 ISTPILFKLLEEPP-AFRDAVLMV-----QKEVARRLAAKPGSKDYGRLSVLLQ 136 (169)
T ss_pred cHHHHHHHHHhcCC-CcceEEEEE-----EHHHhHHhcCCCCCCcccHHHHHHH
Confidence 66677777765433 235666666 3322223455666555444455553
No 58
>PRK03612 spermidine synthase; Provisional
Probab=68.24 E-value=12 Score=36.42 Aligned_cols=105 Identities=24% Similarity=0.201 Sum_probs=60.3
Q ss_pred cccceeeecCCchhHhHhhhcccc-ccccccccccccchhHHHHH---H--------Hh-hceeeeeeecCCCCCCCCCc
Q 024173 100 SMHKVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYDIEDADARCKS---L--------VH-KGIVRVADIKFPLPYRAKSF 166 (271)
Q Consensus 100 sM~kVLHVGPdtC~VVs~LLkEe~-tEAWGVEPydied~d~~CKs---L--------vr-KGiVRvADIkfpLPYR~kSF 166 (271)
.-++||.+|..+..+...+++... .+...||.-+ ++-..|+. + -. +=-+..+|..--+.-.+++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 457899999999999999998755 6777776411 12222332 0 00 11245567654455556799
Q ss_pred cEEEecccccccChhhhcc-----cccc-hhhcccCceEEEec-CCCch
Q 024173 167 PLVIVSDALDYLSPKYLNK-----TLPD-LARVASDGVLIFAG-YPGQQ 208 (271)
Q Consensus 167 slVivSDaLDyLspryLNk-----TLPe-LaRvsadglViF~G-~Pgqq 208 (271)
++||+ |.-|--.|. .++ -+.. ..++..+|++++.. .|--+
T Consensus 375 DvIi~-D~~~~~~~~-~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~ 421 (521)
T PRK03612 375 DVIIV-DLPDPSNPA-LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA 421 (521)
T ss_pred CEEEE-eCCCCCCcc-hhccchHHHHHHHHHhcCCCeEEEEecCCcccc
Confidence 99876 544322221 111 1112 24678899988754 34433
No 59
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=65.37 E-value=25 Score=29.80 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=41.8
Q ss_pred cceeeecCCchhHhHhhhccc-ccccccccccc--ccchhHHHHHHH-hhceeeeeeecCCCCCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLv-rKGiVRvADIkfpLPYR~kSFslViv 171 (271)
.+||.+|..+-.+...|.+.- ..+..|+|..+ ++-+..|++... ..--+..+|+--+++ ..+|++||.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~ 181 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVS 181 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEE
Confidence 479999999987766666554 46777877543 334444444111 122345567644554 578999876
No 60
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=65.17 E-value=17 Score=31.05 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=62.0
Q ss_pred ccceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHHhhce-eeeeeecCCCCCCCCCccEEEeccccccc
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALDYL 178 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrKGi-VRvADIkfpLPYR~kSFslVivSDaLDyL 178 (271)
-.+||-||-.|..+...|.+.- ..+..|||+-+ +.-..++ ++++ ++.+|+. .++. ..+|++|+.+.+|.|+
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~---~~~~~~~~~d~~-~~~~-~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAAR---ERGVDARTGDVR-DWKP-KPDTDVVVSNAALQWV 102 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHH---hcCCcEEEcChh-hCCC-CCCceEEEEehhhhhC
Confidence 3689999999988766665542 46788998853 1112222 1232 4567774 3332 4689999999999998
Q ss_pred Chhhhcccccchhhc-ccCceEEEe
Q 024173 179 SPKYLNKTLPDLARV-ASDGVLIFA 202 (271)
Q Consensus 179 spryLNkTLPeLaRv-sadglViF~ 202 (271)
.. ..+.|.++.|+ ..+|.++++
T Consensus 103 ~d--~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 PE--HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CC--HHHHHHHHHHhCCCCcEEEEE
Confidence 53 35677787774 567787776
No 61
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=64.82 E-value=52 Score=28.29 Aligned_cols=135 Identities=14% Similarity=0.183 Sum_probs=71.4
Q ss_pred ccceeeecCCchhHhHhhhcc--cccccccccccc--ccchhHHHHHHHhhce----eeeeeecCCCCCCCCCccEEEec
Q 024173 101 MHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVS 172 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKGi----VRvADIkfpLPYR~kSFslVivS 172 (271)
-.+||-+|..+-...-.+.+. ...+..||++-+ ++-+..+.+ +.|+ ++.+|+. .+|+-..+|++||..
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~---~~g~~~v~~~~~d~~-~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR---KAGYTNVEFRLGEIE-ALPVADNSVDVIISN 153 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH---HcCCCCEEEEEcchh-hCCCCCCceeEEEEc
Confidence 458999999984432222322 234677887642 333333222 1232 3446764 466666799999877
Q ss_pred ccccccChhhhcccccchhhc-ccCceEEEecCCCchh---hhHHhh-hhcCCccccccchhHHHHHHHhcccc
Q 024173 173 DALDYLSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQR---AKVAEL-SKFGRPAKMRSSSWWIRYFVQTSLEE 241 (271)
Q Consensus 173 DaLDyLspryLNkTLPeLaRv-sadglViF~G~Pgqqr---akvael-skfgrpaK~rsssWW~r~F~qt~LeE 241 (271)
.++.+... .-+.+.++.|+ ..+|.+++++.+.... .-..++ ...|......+..=|.+.+.++|+..
T Consensus 154 ~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 154 CVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred CcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 77755431 23456666665 4578888877543220 000111 11122233334444677777777654
No 62
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=64.63 E-value=4.9 Score=38.54 Aligned_cols=155 Identities=23% Similarity=0.329 Sum_probs=83.5
Q ss_pred HHHHhHhHHHHHHhcccccceeeecCCchhHhHhhh-cccc-ccccccccccccchhHHHHHHHhhceeeeeeec----C
Q 024173 84 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLL-KEEE-TEAWGVEPYDIEDADARCKSLVHKGIVRVADIK----F 157 (271)
Q Consensus 84 ~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LL-kEe~-tEAWGVEPydied~d~~CKsLvrKGiVRvADIk----f 157 (271)
..+.+||--|+.+ |..+ +||-|--..+.-|=-.| +..+ .+.==+.-|.-.++..-=+-.-++|+=-+|-.. |
T Consensus 121 ~~i~~ai~~L~~~-g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf 198 (311)
T PF12147_consen 121 ELIRQAIARLREQ-GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF 198 (311)
T ss_pred HHHHHHHHHHHhc-CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence 3456666666443 3333 46666544444443333 3333 111122233333433333444455654332111 1
Q ss_pred -CCCCCCC--CccEEEecccccccChhh-hcccccchhh-cccCceEEEecCCC--chh--hhHHhhhhcCCccccccch
Q 024173 158 -PLPYRAK--SFPLVIVSDALDYLSPKY-LNKTLPDLAR-VASDGVLIFAGYPG--QQR--AKVAELSKFGRPAKMRSSS 228 (271)
Q Consensus 158 -pLPYR~k--SFslVivSDaLDyLspry-LNkTLPeLaR-vsadglViF~G~Pg--qqr--akvaelskfgrpaK~rsss 228 (271)
+--|.+- .-.|+|||-..|+.+-.- ++.+|--|++ +..+|.+|+||+|= |.. |++=-=-+-|.|=-||-+|
T Consensus 199 d~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRs 278 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRS 278 (311)
T ss_pred CHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecC
Confidence 0012211 227999999999999855 7889999999 89999999999874 443 2222112457777777665
Q ss_pred h--HHHHHHHhccc
Q 024173 229 W--WIRYFVQTSLE 240 (271)
Q Consensus 229 W--W~r~F~qt~Le 240 (271)
= =-+.|..+|++
T Consensus 279 q~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 279 QAEMDQLVEAAGFE 292 (311)
T ss_pred HHHHHHHHHHcCCc
Confidence 2 22344444444
No 63
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=57.53 E-value=14 Score=32.25 Aligned_cols=94 Identities=23% Similarity=0.276 Sum_probs=61.0
Q ss_pred cceeeecCCc---hhHhHhhhcccccccccccccc--ccchhHHHHHHHhhc-eeeeeeecCCCCCCCCCccEEEecccc
Q 024173 102 HKVLHVGPDT---CSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdt---C~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaL 175 (271)
.+||.||-.| +.+++.|.... +..-+||.++ .+-+..++..+-... .+.++|...++|=.+ .|+.||++=+.
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a-pfD~I~v~~a~ 151 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA-PFDRIIVTAAV 151 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBB
T ss_pred CEEEEecCCCcHHHHHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC-CcCEEEEeecc
Confidence 4899999875 45677777433 3566888765 344666666554444 378899988887655 69999999999
Q ss_pred cccChhhhcccccchhhcccCceEEE-ecC
Q 024173 176 DYLSPKYLNKTLPDLARVASDGVLIF-AGY 204 (271)
Q Consensus 176 DyLspryLNkTLPeLaRvsadglViF-~G~ 204 (271)
+-+.+.++. .+..+|.+|+ .+.
T Consensus 152 ~~ip~~l~~-------qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 152 PEIPEALLE-------QLKPGGRLVAPIGQ 174 (209)
T ss_dssp SS--HHHHH-------TEEEEEEEEEEESS
T ss_pred chHHHHHHH-------hcCCCcEEEEEEcc
Confidence 877666554 3456777666 443
No 64
>PRK00811 spermidine synthase; Provisional
Probab=55.86 E-value=36 Score=30.45 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=64.4
Q ss_pred hHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHHh---hce-------ee
Q 024173 83 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH---KGI-------VR 151 (271)
Q Consensus 83 t~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvr---KGi-------VR 151 (271)
--|.+..+|.+. -..-++||.+|-.+..+...+|+.. ..+.-+||.-. ++-..|+.... .|. +.
T Consensus 62 Y~e~l~h~~~~~---~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~ 136 (283)
T PRK00811 62 YHEMMTHVPLFA---HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELV 136 (283)
T ss_pred HHHHhhhHHHhh---CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEE
Confidence 345556667663 2346799999999999999999862 23444444321 12223433221 122 45
Q ss_pred eeeecCCCCCCCCCccEEEecccccccChh-hh--cccccc-hhhcccCceEEEe-cCCCc
Q 024173 152 VADIKFPLPYRAKSFPLVIVSDALDYLSPK-YL--NKTLPD-LARVASDGVLIFA-GYPGQ 207 (271)
Q Consensus 152 vADIkfpLPYR~kSFslVivSDaLDyLspr-yL--NkTLPe-LaRvsadglViF~-G~Pgq 207 (271)
++|..--++-..++|++||+ |+-|-..|- -| ..-+-+ ..++..+|++++- +.|--
T Consensus 137 ~~Da~~~l~~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~ 196 (283)
T PRK00811 137 IGDGIKFVAETENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFY 196 (283)
T ss_pred ECchHHHHhhCCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCccc
Confidence 57754334445678999875 654322221 11 001112 2456788888773 44543
No 65
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=54.94 E-value=20 Score=31.57 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=57.4
Q ss_pred cceeeecCCchhHhHhhhcc--cccccccccccc--ccchhHHHHHHHhhce-eeeeeecCCCCCCCCCccEEEeccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALD 176 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKGi-VRvADIkfpLPYR~kSFslVivSDaLD 176 (271)
.+||-||-.|=.+...|.+. ..++.=||++.+ ++-+..+++..-..-+ .-.+|. .-||++..||+.|..+=.|-
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHH
Confidence 39999999998777677664 346777776543 2334444443222211 222443 35889999999999999998
Q ss_pred ccChhhhcccccchhhcccC-ceEEE--ecCCCc
Q 024173 177 YLSPKYLNKTLPDLARVASD-GVLIF--AGYPGQ 207 (271)
Q Consensus 177 yLspryLNkTLPeLaRvsad-glViF--~G~Pgq 207 (271)
.+.. ..+.|.|+.||-.. |.+++ .+.|.+
T Consensus 128 n~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 128 NFPD--RERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp G-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred hhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 8864 57899999999754 44433 345654
No 66
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=54.33 E-value=12 Score=30.25 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCCCchhhHHHHHHHHhhhhhhccCCCccCCc
Q 024173 29 RSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGD 60 (271)
Q Consensus 29 rsspllsi~lv~vgailli~Y~ysgsg~~~~~ 60 (271)
..+-|++|.+++|-.||||..+-++|++-.++
T Consensus 23 ~pn~lMtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 23 NPNTLMTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34568889999999999999999999875543
No 67
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=53.96 E-value=24 Score=31.19 Aligned_cols=66 Identities=26% Similarity=0.558 Sum_probs=40.5
Q ss_pred HHHHHHHhhceeeeeeecCCCCCCCCCc--cEEEecccccccChhhhcccccchhhcccCceEEEecCCCchhhh
Q 024173 139 ARCKSLVHKGIVRVADIKFPLPYRAKSF--PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAK 211 (271)
Q Consensus 139 ~~CKsLvrKGiVRvADIkfpLPYR~kSF--slVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrak 211 (271)
..=+.|+.+|.+.+.++.| .|=.+| ++|||=+| .-+||..+=.. |.|+..+.=+||+|.|.|+-.+
T Consensus 94 ~~~~~~~~~~~Ie~~~~~~---iRGrt~~~~~iIvDEa-QN~t~~~~k~i---lTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 94 EKLEELIQNGKIEIEPLAF---IRGRTFDNAFIIVDEA-QNLTPEELKMI---LTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TCHHHHHHTTSEEEEEGGG---GTT--B-SEEEEE-SG-GG--HHHHHHH---HTTB-TT-EEEEEE--------
T ss_pred HhHHHHhhcCeEEEEehhh---hcCccccceEEEEecc-cCCCHHHHHHH---HcccCCCcEEEEecCceeecCC
Confidence 3456788999999999888 577788 67776555 66788887544 7899999999999999999544
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=51.44 E-value=35 Score=28.62 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=54.2
Q ss_pred cceeeecCCchhHhHhhhccc--ccccccccccc--ccchhHHHHHHHhhc-eeeeeeecCCCCCCCCCccEEEeccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALD 176 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe--~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaLD 176 (271)
.+||-+|..|=.....|.+.. ++..+|||..+ ++.+..+++.+--+. .+..+|..-.++ ....|++|+++.+..
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-PLAPYDRIYVTAAGP 157 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-ccCCCCEEEEcCCcc
Confidence 489999999877665555432 34689998653 333444444331111 244556543322 235899999887665
Q ss_pred ccChhhhcccccchhhcccCceEEEec
Q 024173 177 YLSPKYLNKTLPDLARVASDGVLIFAG 203 (271)
Q Consensus 177 yLspryLNkTLPeLaRvsadglViF~G 203 (271)
.+.+. + ...+..+|.+|+.-
T Consensus 158 ~~~~~-~------~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 158 KIPEA-L------IDQLKEGGILVMPV 177 (215)
T ss_pred cccHH-H------HHhcCcCcEEEEEE
Confidence 54322 2 23467788776643
No 69
>PLN02823 spermine synthase
Probab=51.19 E-value=37 Score=31.91 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=62.2
Q ss_pred chHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHHhhce-----------
Q 024173 82 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGI----------- 149 (271)
Q Consensus 82 ct~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLvrKGi----------- 149 (271)
.--|.+--+|.+. -..-++||++|=..+.+...+|+.. ..+.-.| |.|...-.+.|+=+
T Consensus 88 ~YhE~l~h~~l~~---~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~V------EiD~~vv~lar~~~~~~~~~~~dpr 158 (336)
T PLN02823 88 VYHESLVHPALLH---HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMC------DIDQEVVDFCRKHLTVNREAFCDKR 158 (336)
T ss_pred HHHHHHHhHHHhh---CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEE------ECCHHHHHHHHHhcccccccccCCc
Confidence 3445555556652 2356899999999999999999853 2233333 33444333333321
Q ss_pred --eeeeeecCCCCCCCCCccEEEeccccccc---------ChhhhcccccchhhcccCceEEEec
Q 024173 150 --VRVADIKFPLPYRAKSFPLVIVSDALDYL---------SPKYLNKTLPDLARVASDGVLIFAG 203 (271)
Q Consensus 150 --VRvADIkfpLPYR~kSFslVivSDaLDyL---------spryLNkTLPeLaRvsadglViF~G 203 (271)
|.++|---=|.-..++|++|| .|+-|=. +..++.+.+ ..++..+|++++-.
T Consensus 159 v~v~~~Da~~~L~~~~~~yDvIi-~D~~dp~~~~~~~~Lyt~eF~~~~~--~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 159 LELIINDARAELEKRDEKFDVII-GDLADPVEGGPCYQLYTKSFYERIV--KPKLNPGGIFVTQA 220 (336)
T ss_pred eEEEEChhHHHHhhCCCCccEEE-ecCCCccccCcchhhccHHHHHHHH--HHhcCCCcEEEEec
Confidence 344454333444457899877 4554421 223332111 25689999988654
No 70
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=51.15 E-value=23 Score=33.46 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=71.4
Q ss_pred cceeeecCCchhHhHhhhccccccccccccc--cccchhHHHHHHHh-hceeeeeeecCC---CCCCCCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVH-KGIVRVADIKFP---LPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvr-KGiVRvADIkfp---LPYR~kSFslVivSDaL 175 (271)
.+||-+|-.|-.+--.|.+. ..+..|||.. -++++..|.+..-- .--+..+|+.=. +|+..++|++||+
T Consensus 299 ~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~---- 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL---- 373 (443)
T ss_pred CEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE----
Confidence 47999999998765555544 3577888854 46666666654311 112445666422 4566678998864
Q ss_pred cccChhh--hcccccchhhcccCceEEEecCCCchhhhHHhhhhcC
Q 024173 176 DYLSPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 219 (271)
Q Consensus 176 DyLspry--LNkTLPeLaRvsadglViF~G~Pgqqrakvaelskfg 219 (271)
+|-| +.+.+..|++...+++|.++=+|.-...-++.|.+-|
T Consensus 374 ---dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~~~g 416 (443)
T PRK13168 374 ---DPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEAG 416 (443)
T ss_pred ---CcCCcChHHHHHHHHhcCCCeEEEEEeChHHhhccHHHHhhCC
Confidence 3333 3455666777889999999999988766666665433
No 71
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=49.47 E-value=14 Score=30.01 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=39.0
Q ss_pred eeeeeecCCCCCCCCCccEEEecccccccChhhhcccccchhhcccCc-eEEE
Q 024173 150 VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG-VLIF 201 (271)
Q Consensus 150 VRvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadg-lViF 201 (271)
+.++|+. .||+-..+|++|+.+..|-++. -..+.|-|+.||-..| .+++
T Consensus 30 ~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 30 WIEGDAI-DLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred EEEechh-hCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEEE
Confidence 5668875 7899999999999999998885 3568899999987765 4443
No 72
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=46.43 E-value=75 Score=25.94 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=62.5
Q ss_pred HHHhHhHHHHHHhcccccceeeecCCchhHhHhhhcc--ccccccccccccccchhHHHHHHHhhceee-eeeecCCC--
Q 024173 85 EIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGIVR-VADIKFPL-- 159 (271)
Q Consensus 85 eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPydied~d~~CKsLvrKGiVR-vADIkfpL-- 159 (271)
|+-+.++.+++ | .+||-+|-.|-.+...+.+. +..+.+|||+-++. + ..++-- .+|+.-+-
T Consensus 22 ~~~~~~~~i~~--g---~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~---~~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 22 QLNQKFKLIKP--G---DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P---IENVDFIRGDFTDEEVL 87 (188)
T ss_pred HHHHHhcccCC--C---CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c---CCCceEEEeeCCChhHH
Confidence 44455555543 2 47999999998876666554 45579999988753 1 124322 24665321
Q ss_pred -----CCCCCCccEEEeccc---------ccccCh-hhhcccccchhhc-ccCceEEEecCCC
Q 024173 160 -----PYRAKSFPLVIVSDA---------LDYLSP-KYLNKTLPDLARV-ASDGVLIFAGYPG 206 (271)
Q Consensus 160 -----PYR~kSFslVivSDa---------LDyLsp-ryLNkTLPeLaRv-sadglViF~G~Pg 206 (271)
.+...+|++|+. |+ ++++.. .-+.++|-++.|+ ...|.+++..+..
T Consensus 88 ~~l~~~~~~~~~D~V~~-~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMS-DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHHHhCCCCccEEEc-CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 134668998875 33 222111 1135677777766 5678888866443
No 73
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=45.69 E-value=10 Score=29.00 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=11.3
Q ss_pred ccchhHHHHHHHhc
Q 024173 225 RSSSWWIRYFVQTS 238 (271)
Q Consensus 225 rsssWW~r~F~qt~ 238 (271)
-++.||..||.|++
T Consensus 46 ~~~~fwk~fFe~sA 59 (66)
T PF08655_consen 46 DSAKFWKQFFEQSA 59 (66)
T ss_pred HHHhHHHHHHHhhh
Confidence 35689999999875
No 74
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=44.95 E-value=1.3e+02 Score=26.65 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=40.8
Q ss_pred cceeeecCCchhHhHhhhccc-ccccccccccc--ccchhHHHHHHHhhc--eeeeeeecCCCCCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKG--iVRvADIkfpLPYR~kSFslViv 171 (271)
.+||-+|-.|..+.-.|.++- ..+..|||..+ ++-+..|++.+--.+ -+..+|+--++ ..+.|++||.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEE
Confidence 589999999998877777664 35777777543 444555554331111 13345654333 3347987654
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=44.94 E-value=91 Score=25.90 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=68.0
Q ss_pred HHHHhcccccceeeecCCchhHhHhhhccc-ccccccccccc--ccchhHHHHHH-HhhceeeeeeecCCCC--CCCCCc
Q 024173 93 LKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSL-VHKGIVRVADIKFPLP--YRAKSF 166 (271)
Q Consensus 93 LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsL-vrKGiVRvADIkfpLP--YR~kSF 166 (271)
+++.+|+...+||-+|=.+=.+...|.+.. +....|||+++ ++-+..+++.. +.+--+...|+..-++ +-..+|
T Consensus 9 ~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 9 FATVFGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred HHHHhCCCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCce
Confidence 577889888999999998877776777653 67889999875 23334443322 0111123356532111 334478
Q ss_pred cEEEecccccccChh-----hhc-ccccchhhc-ccCceEEEecCCCchhh-hHHhhhhcC
Q 024173 167 PLVIVSDALDYLSPK-----YLN-KTLPDLARV-ASDGVLIFAGYPGQQRA-KVAELSKFG 219 (271)
Q Consensus 167 slVivSDaLDyLspr-----yLN-kTLPeLaRv-sadglViF~G~Pgqqra-kvaelskfg 219 (271)
+.|++.=-.-|...+ -+| ..+-+++|+ ..+|.++|+-...+.-. -...+.+.+
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence 887753111111111 111 124556676 55788877764443322 234444443
No 76
>PRK04457 spermidine synthase; Provisional
Probab=44.85 E-value=32 Score=30.55 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=59.1
Q ss_pred cccceeeecCCchhHhHhhhcc-ccccccccccccccchhHHHHHHHh-hc-----eeeeeeecCCCCCCCCCccEEEec
Q 024173 100 SMHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVH-KG-----IVRVADIKFPLPYRAKSFPLVIVS 172 (271)
Q Consensus 100 sM~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPydied~d~~CKsLvr-KG-----iVRvADIkfpLPYR~kSFslVivS 172 (271)
.-++||++|-.+.++...|++- .+.+..+||.- +++-..|+.... .+ -|.++|..--++=-+.+|++|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~- 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV- 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE-
Confidence 4578999999999987766654 24556666641 123333443221 11 24557753223222467998876
Q ss_pred cccccc-Chhhhc--ccccch-hhcccCceEEE--ecCCCchhhhHHhh
Q 024173 173 DALDYL-SPKYLN--KTLPDL-ARVASDGVLIF--AGYPGQQRAKVAEL 215 (271)
Q Consensus 173 DaLDyL-spryLN--kTLPeL-aRvsadglViF--~G~Pgqqrakvael 215 (271)
|+.+-- -|..|+ ..+.+. .++..+|++++ .+.+...+.-++.+
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l 191 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERL 191 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHH
Confidence 554311 111222 112222 35788999887 34444333334444
No 77
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=43.65 E-value=42 Score=34.23 Aligned_cols=122 Identities=24% Similarity=0.414 Sum_probs=89.9
Q ss_pred hHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhceeeeeee--cCCCC
Q 024173 83 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADI--KFPLP 160 (271)
Q Consensus 83 t~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADI--kfpLP 160 (271)
...+.+.||.. .-|...+-+|-||=.+=|.-+.|++ -+.-+-.+.|+|-. .+.+.--.++|+.-+--+ ..-||
T Consensus 102 id~i~~~~~~~--~~~g~iR~~LDvGcG~aSF~a~l~~-r~V~t~s~a~~d~~--~~qvqfaleRGvpa~~~~~~s~rLP 176 (506)
T PF03141_consen 102 IDQIAEMIPLI--KWGGGIRTALDVGCGVASFGAYLLE-RNVTTMSFAPNDEH--EAQVQFALERGVPAMIGVLGSQRLP 176 (506)
T ss_pred HHHHHHHhhcc--ccCCceEEEEeccceeehhHHHHhh-CCceEEEcccccCC--chhhhhhhhcCcchhhhhhcccccc
Confidence 34566777766 6788999999999999999999884 45557778887544 344555567887655333 56788
Q ss_pred CCCCCccEEEecccccccChhhhcccccchhhcc-cCceEEEecCCCchhh
Q 024173 161 YRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAGYPGQQRA 210 (271)
Q Consensus 161 YR~kSFslVivSDaLDyLspryLNkTLPeLaRvs-adglViF~G~Pgqqra 210 (271)
|=+.+|++|=.|..+.--.+.- -.-|-|+-||= .-|..+.+|.|-++|.
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r~ 226 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQRT 226 (506)
T ss_pred CCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCcccccc
Confidence 8899999999988775444432 35678888874 6789999999988543
No 78
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=43.28 E-value=7.5 Score=28.13 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=33.3
Q ss_pred CCCCCCCCCccEEEecccccccChhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhc-CC-ccc
Q 024173 157 FPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKF-GR-PAK 223 (271)
Q Consensus 157 fpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakvaelskf-gr-paK 223 (271)
+.+|| -+--.+.+-.+.++.++.+|+++..==-.+.+.+.++|.+..|-.. ....++... |+ +++
T Consensus 20 ~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lPl~~~~~~l~va~~dP~~~-~~~~~l~~~~~~~~i~ 86 (109)
T PF05157_consen 20 LGLPF-VDLDELPVDPELLDRLPLEFARRNRVLPLRQDDGTLVVAVADPLDP-EALDELEFLLGKYPIE 86 (109)
T ss_dssp HT--B---GGGS-SS-----G--HHHHHHHTEEEEEECTTCEEEEES-TT-H-HHHHHHHHHH-S--EE
T ss_pred hCCCe-echhhcCCCHHHHHhhHHHHHHHcCEEEEEEECCEEEEEEcCCCCH-HHHHHHHHHcCCCCeE
Confidence 55666 3334445556678889999996653333567788899999999874 666666554 77 666
No 79
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=42.46 E-value=14 Score=29.00 Aligned_cols=16 Identities=38% Similarity=0.964 Sum_probs=13.4
Q ss_pred cccCc-eEEEecCCCch
Q 024173 193 VASDG-VLIFAGYPGQQ 208 (271)
Q Consensus 193 vsadg-lViF~G~Pgqq 208 (271)
+++|| |.||-|.|++.
T Consensus 15 i~~dG~LslF~G~P~~~ 31 (75)
T PF08955_consen 15 ISEDGVLSLFEGPPGEE 31 (75)
T ss_dssp EETTTEEEEBSSS-STT
T ss_pred EcCCCcEEEEecCCCCC
Confidence 67899 88999999987
No 80
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=41.56 E-value=8.2 Score=37.08 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=28.0
Q ss_pred cCceEEEec-CC---CchhhhHHhhhhcCCccccccchhHHHHHHH
Q 024173 195 SDGVLIFAG-YP---GQQRAKVAELSKFGRPAKMRSSSWWIRYFVQ 236 (271)
Q Consensus 195 adglViF~G-~P---gqqrakvaelskfgrpaK~rsssWW~r~F~q 236 (271)
..|||||+| .| |..+-..-++. -++|+..---.||.+|++.
T Consensus 78 ~nGlv~f~g~~~~~~~~~~~~t~~ie-p~~pi~~~~y~cd~~f~le 122 (403)
T TIGR03676 78 ENGLVLFAGMVPTGGGTEKMETYVIE-PPEPINTYLYRCDSKFYLE 122 (403)
T ss_pred CCeEEEEEeeecCCCCceeEEEEEEe-CCCceEEEEecCCChHHHH
Confidence 389999999 34 33322222232 5888888888899999875
No 81
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=40.52 E-value=65 Score=30.03 Aligned_cols=107 Identities=16% Similarity=0.065 Sum_probs=70.8
Q ss_pred cceeeecCCchhHhHhhhccccccccccc--cccccchhHHHHHHH-hhceeeeeeecCCCCCCCCCccEEEeccccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 178 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVE--Pydied~d~~CKsLv-rKGiVRvADIkfpLPYR~kSFslVivSDaLDyL 178 (271)
.+||-+|=.|-.+---|... ..+.+||| |--++++..|.+.+= .+--+..+|+.-.++-..++|++||+ |
T Consensus 235 ~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~-D----- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV-N----- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE-C-----
Confidence 57999998888776666644 36889998 566777777765541 11125566764334433356887665 4
Q ss_pred Chhh--hcccccchhhcccCceEEEecCCCchhhhHHhh
Q 024173 179 SPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 215 (271)
Q Consensus 179 spry--LNkTLPeLaRvsadglViF~G~Pgqqrakvael 215 (271)
.||- .++.+..|++...+++|..+-+|..+-.-++.|
T Consensus 308 PPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 308 PPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred CCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh
Confidence 5553 335556778888899999999999885545555
No 82
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=39.96 E-value=27 Score=30.12 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=30.3
Q ss_pred CCccccCCCCc-ccccccccccCCCCchhhHHHHHHHH-----hhhhhhccC
Q 024173 8 STRRLVDTGSF-PFTGALQSKSRSSPLLSVGLVLVGAF-----LLIGYAFSG 53 (271)
Q Consensus 8 ~srr~gd~G~~-~~~g~~~sKSrsspllsi~lv~vgai-----lli~Y~ysg 53 (271)
-+|..-|.-.. -++|-++.-+.++|.--+|++++|.+ +...|+|-+
T Consensus 58 ~~R~l~~tNtt~~tGGELr~~pte~p~evvG~l~LGvV~GG~i~vLcylylP 109 (127)
T PF06040_consen 58 HSRSLSDTNTTTKTGGELRGPPTESPWEVVGYLILGVVAGGLIAVLCYLYLP 109 (127)
T ss_pred hcccccccCCccccCceEeCCCCCCCeeeeehhhHHHHhccHHHHHHHHhcc
Confidence 34554555444 56788888888899888877776654 455576643
No 83
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=39.60 E-value=39 Score=28.52 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=47.6
Q ss_pred cEEEecccccccChhhhcccccchhhcccCceEEEecCCCchhhhHHhhh--------hcCCccccccchhHHHHHH
Q 024173 167 PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELS--------KFGRPAKMRSSSWWIRYFV 235 (271)
Q Consensus 167 slVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakvaels--------kfgrpaK~rsssWW~r~F~ 235 (271)
-.||++|..-. ++-.++++.+-+-+++.+-.+.++|.+|-.+.-+..+. ++|++..++.-..+.....
T Consensus 39 gvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~ 114 (211)
T cd03756 39 GVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLK 114 (211)
T ss_pred EEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 36788888765 55555778888999999999999998876544333222 4777777766666665544
No 84
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=39.47 E-value=55 Score=29.74 Aligned_cols=102 Identities=27% Similarity=0.305 Sum_probs=70.5
Q ss_pred ccceeeecCCchhHhHhhhccc-ccccccccccc--ccchhHHHHHHHhhceee--eeeecCCCCCCCCCccEEEecccc
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGIVR--VADIKFPLPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKGiVR--vADIkfpLPYR~kSFslVivSDaL 175 (271)
=.+||-||=.|=-+--.|-|+- ..+.+|+++.+ ++-+-..|+.+=-++ |+ ++|. .-|||.-+||++|.+|=.|
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA-e~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA-ENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech-hhCCCCCCccCEEEeeehh
Confidence 3579999988866555444433 36778876543 444444554432223 22 5554 3699999999999999999
Q ss_pred cccChhhhcccccchhhcccCce---EEEecCCC
Q 024173 176 DYLSPKYLNKTLPDLARVASDGV---LIFAGYPG 206 (271)
Q Consensus 176 DyLspryLNkTLPeLaRvsadgl---ViF~G~Pg 206 (271)
..++ ..++-|-|+.||---|- |+=.+.|.
T Consensus 130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 9998 77899999999987654 55555653
No 85
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=37.29 E-value=16 Score=31.25 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=32.3
Q ss_pred eeeecCCCCCCCCCccEEE-ecccccccChhhhcccccchhhcccCceEEEecCCCchhhhHH
Q 024173 152 VADIKFPLPYRAKSFPLVI-VSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVA 213 (271)
Q Consensus 152 vADIkfpLPYR~kSFslVi-vSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakva 213 (271)
+.|+-+.-.|||++|+=++ =+++++-|...--+.+.| .++|+|-||-=|.-.+
T Consensus 2 ~~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~---------~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMP---------HLLFAGPPGTGKTTAA 55 (319)
T ss_pred CccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCC---------eEEEECCCCCCHHHHH
Confidence 3456667789999999544 344444433211122333 3799999998875544
No 86
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=37.22 E-value=44 Score=30.10 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=66.2
Q ss_pred cceeeecCCchhHhHhhhccccccccccccc--cccchhHHHHHHHhhce----eeeeeecCCCCCCCCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKGi----VRvADIkfpLPYR~kSFslVivSDaL 175 (271)
.+||.+|-.+-.+--.|.+ ...+.+|||.. -++.+..|++.. |+ +..+|+.--++--.+.|++||+ |
T Consensus 175 ~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~---~l~~v~~~~~D~~~~~~~~~~~~D~Vv~-d-- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAEL---GLTNVQFQALDSTQFATAQGEVPDLVLV-N-- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHc---CCCceEEEEcCHHHHHHhcCCCCeEEEE-C--
Confidence 6799999998776655555 44688999854 345555555432 33 3455653222111346888774 4
Q ss_pred cccChhh--hcccccchhhcccCceEEEecCCCchhhhHHhh
Q 024173 176 DYLSPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 215 (271)
Q Consensus 176 DyLspry--LNkTLPeLaRvsadglViF~G~Pgqqrakvael 215 (271)
.||. .++.+.-|.+...+.||..+-+|.-.....+.|
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 5654 345556777888899999999998775444444
No 87
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=37.01 E-value=47 Score=27.88 Aligned_cols=51 Identities=33% Similarity=0.448 Sum_probs=39.1
Q ss_pred CCCCccEEEecccccccChhhhcccccchhhcccCceEEEecCCC--chhhhHHhhhhcC
Q 024173 162 RAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG--QQRAKVAELSKFG 219 (271)
Q Consensus 162 R~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pg--qqrakvaelskfg 219 (271)
|-.|+.++=.+|+ .|.+|...+|-..|.. |++|+|..- +|+.++..+.++-
T Consensus 3 R~~~a~V~r~aD~----~p~~L~~~~~adGrfr---I~vFagd~~~~~~~~~l~~~~~~L 55 (167)
T cd02979 3 RFPSAPVVRQADA----LPVHLGHRLPADGRFR---IYVFAGDIAPAQQKSRLTQLCDAL 55 (167)
T ss_pred cCCCceEEEecCC----CCHhHhhhccCCCCEE---EEEEcCCCCchhHHHHHHHHHHHH
Confidence 5566777777776 4888998888777664 999999654 8888888887765
No 88
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=36.62 E-value=22 Score=29.53 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=32.0
Q ss_pred CCccEEEecccccccChhhhcccccchhhcccCceEEEecCC
Q 024173 164 KSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYP 205 (271)
Q Consensus 164 kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~P 205 (271)
-.+++|+++|+==.++|.||+..+.+|+. ...|+| |++|
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglV--t~~~ 68 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLV--TGLP 68 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEE--Eecc
Confidence 67899999999889999999999999987 445555 5544
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=36.08 E-value=2.1e+02 Score=22.37 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=40.1
Q ss_pred cceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhc---eeeeeeecCCCCCCCCCccEEEecc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG---IVRVADIKFPLPYRAKSFPLVIVSD 173 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKG---iVRvADIkfpLPYR~kSFslVivSD 173 (271)
.+||-+|..+=.....|++. .....|+|.-+ ++-+..+++..--+. .+...|..= +.+.++|++||...
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~d~vi~n~ 98 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE--PFRGDKFDVILFNP 98 (188)
T ss_pred CEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc--cccccCceEEEECC
Confidence 47999998877777777766 67778877542 222333332211111 133455433 44567899998643
No 90
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=35.60 E-value=22 Score=29.14 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=31.6
Q ss_pred ceeeeeeecCCCCCCCCCccEEEecccccccChhhhcccccchhhcccCceEEEec
Q 024173 148 GIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 203 (271)
Q Consensus 148 GiVRvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G 203 (271)
-|+.+.|++|.- +...+...++.++.++.+... -+||+||
T Consensus 2 ~i~~isD~H~~~---------------~~~~~~~~~~~~~~~i~~~~~-D~~v~tG 41 (301)
T COG1409 2 RIAHISDLHLGA---------------LGVDSEELLEALLAAIEQLKP-DLLVVTG 41 (301)
T ss_pred eEEEEecCcccc---------------cccchHHHHHHHHHHHhcCCC-CEEEEcc
Confidence 367788888876 677888889999888886666 4677898
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=35.12 E-value=53 Score=27.73 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=40.7
Q ss_pred cceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslViv 171 (271)
.+||-+|..+-.+...+.+....+..|||..+ ++-+..|++..=-+--+..+|+.-++ +..+|++||.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~ 107 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV--EFRPFDVVVS 107 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc--cCCCeeEEEE
Confidence 47999999997766666665445777877654 33333344322001234556765444 3568999885
No 92
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=34.66 E-value=85 Score=27.62 Aligned_cols=107 Identities=22% Similarity=0.417 Sum_probs=63.1
Q ss_pred HHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccccccccccccccccc-hhHHHHHHHhh-ce---eeeeeec-C
Q 024173 84 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHK-GI---VRVADIK-F 157 (271)
Q Consensus 84 ~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied-~d~~CKsLvrK-Gi---VRvADIk-f 157 (271)
+||.+|+++++. .|+|-+|=...-=---|- +- -|-|.-.|+.+ +=.+.+.+.++ ++ .+++||. +
T Consensus 20 s~v~~a~~~~~~------g~~LDlgcG~GRNalyLA-~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 20 SEVLEAVPLLKP------GKALDLGCGEGRNALYLA-SQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF 89 (192)
T ss_dssp HHHHHHCTTS-S------SEEEEES-TTSHHHHHHH-HT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB
T ss_pred HHHHHHHhhcCC------CcEEEcCCCCcHHHHHHH-HC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc
Confidence 689999999863 489999866554322222 22 34566666666 33345666543 33 3677873 4
Q ss_pred CCCCCCCCccEEEecccccccChhhhcccccchh-hcccCceEEEec
Q 024173 158 PLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLA-RVASDGVLIFAG 203 (271)
Q Consensus 158 pLPYR~kSFslVivSDaLDyLspryLNkTLPeLa-RvsadglViF~G 203 (271)
.+| ..|.+|+.+-++.||.|...-+-+-.+. .+...|+.++..
T Consensus 90 ~~~---~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 90 DFP---EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp S-T---TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccc---CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 443 5799888778999999998755555553 345567766633
No 93
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=34.41 E-value=16 Score=28.18 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=19.1
Q ss_pred cccccccccccchh--------HHHHHHHhhceeeeee
Q 024173 125 EAWGVEPYDIEDAD--------ARCKSLVHKGIVRVAD 154 (271)
Q Consensus 125 EAWGVEPydied~d--------~~CKsLvrKGiVRvAD 154 (271)
=.|||.|+-+++.+ ..++.+.++|++.--|
T Consensus 57 l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd 94 (117)
T PF02887_consen 57 LYWGVYPVLIEEFDKDTEELIAEALEYAKERGLLKPGD 94 (117)
T ss_dssp GSTTEEEEECSSHSHSHHHHHHHHHHHHHHTTSS-TTS
T ss_pred cccceEEEEeccccccHHHHHHHHHHHHHHcCCCCCCC
Confidence 46999997666554 3455566777765544
No 94
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=33.86 E-value=37 Score=31.67 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=68.1
Q ss_pred cceeeecCCchhHhHhhhccccccccccccc--cccchhHHHHHHHhhc-eeeeeeecCC---CCCCCCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKG-IVRVADIKFP---LPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKG-iVRvADIkfp---LPYR~kSFslVivSDaL 175 (271)
..||-+|-.+..+--.|.+. ..+..|||.- -++++..|++..--+. -+..+|+.-- ++....+|++||+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~---- 368 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL---- 368 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE----
Confidence 46888888887776665543 4578999854 4666777766431111 2445665422 2344568998885
Q ss_pred cccChhhh---cccccchhhcccCceEEEecCCCchhhhHHhhhhcC
Q 024173 176 DYLSPKYL---NKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 219 (271)
Q Consensus 176 DyLspryL---NkTLPeLaRvsadglViF~G~Pgqqrakvaelskfg 219 (271)
+|-+- ...|..|.++..+++|.++-+|.-...-.+.|.+-|
T Consensus 369 ---dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~~g 412 (431)
T TIGR00479 369 ---DPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEFLCKEG 412 (431)
T ss_pred ---CcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHCC
Confidence 33332 344556777888899888889976644455555443
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=32.72 E-value=2.6e+02 Score=23.94 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=67.0
Q ss_pred cccceeeecCCchhH--hHh-hhccccccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEeccccc
Q 024173 100 SMHKVLHVGPDTCSV--VST-LLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALD 176 (271)
Q Consensus 100 sM~kVLHVGPdtC~V--Vs~-LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLD 176 (271)
.+..+|=.||.-|.- +.+ +.++-..+.|.....++...+..-...++.-+...+. -.|+......+||+-+ .|
T Consensus 37 ~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~vviiDe-~~ 112 (319)
T PRK00440 37 NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFAR---TAPVGGAPFKIIFLDE-AD 112 (319)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHh---cCCCCCCCceEEEEeC-cc
Confidence 444577789887642 222 2232222334332333322222222222222222221 1233323345677666 69
Q ss_pred ccChhhhcccccchhhcccCceEEEecC-CCchhh---hHHhhhhcCCccccccchhHHHHHHHhccccchHHHHHHH
Q 024173 177 YLSPKYLNKTLPDLARVASDGVLIFAGY-PGQQRA---KVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAVKKFE 250 (271)
Q Consensus 177 yLspryLNkTLPeLaRvsadglViF~G~-Pgqqra---kvaelskfgrpaK~rsssWW~r~F~qt~LeEnE~a~KkFe 250 (271)
+|++.-.|.-+.-+...+....+||++. +..--. +-..+-.|..+-.---..|..+++.+.|++=.+++...+-
T Consensus 113 ~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~ 190 (319)
T PRK00440 113 NLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIY 190 (319)
T ss_pred cCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9988665544444444566678888773 221100 0111222222222222467777777777765555555443
No 96
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=32.17 E-value=63 Score=28.00 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=52.9
Q ss_pred cceeeecCCchhHhHhhhccccccccccccc--cccchhHHHHHHHhhce----eeeeeecCCCCCCCCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKGi----VRvADIkfpLPYR~kSFslVivSDaL 175 (271)
.+||-+|=.|.++--.+|.....++=|||-. -++.+..| +-+-|+ +...|+.-.|+....+|++|+
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~N---l~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~----- 126 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKN---LATLKAGNARVVNTNALSFLAQPGTPHNVVF----- 126 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHH---HHHhCCCcEEEEEchHHHHHhhcCCCceEEE-----
Confidence 4799999888766544555555677777642 22333333 333343 445676544554445788775
Q ss_pred cccChhh----hcccccchhh---cccCceEEEec
Q 024173 176 DYLSPKY----LNKTLPDLAR---VASDGVLIFAG 203 (271)
Q Consensus 176 DyLspry----LNkTLPeLaR---vsadglViF~G 203 (271)
++|-| .++++.-|+. +..+++|+..-
T Consensus 127 --~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 127 --VDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred --ECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 34444 3344444444 46788887663
No 97
>PF10514 Bcl-2_BAD: Pro-apoptotic Bcl-2 protein, BAD; InterPro: IPR018868 BAD is a Bcl-2 homology domain 3 (BH3)-only pro-apoptotic member of the Bcl-2 protein family that is regulated by phosphorylation in response to survival factors []. Binding of BAD to mitochondria is thought to be exclusively mediated by its BH3 domain. Membrane localisation of BAD mediates membrane translocation of Bcl-XL. The C-terminal part of BAD is sufficient for membrane binding. There are two segments with differing lipid-binding preferences, LBD1 and LBD2, that are responsible for this binding: (i) LBD1 located in the proximity of the BH3 domain (amino acids 122-131) and (ii) LBD2, the putative C-terminal alpha-helix-5 []. Phosphorylation-regulated 14-3-3 protein binding may expose the cholesterol-preferring LBD1 and bury the LBD2, thereby mediating translocation of BAD to raft-like micro-domains []. ; PDB: 2BZW_B 1G5J_B.
Probab=32.02 E-value=5.1 Score=35.70 Aligned_cols=70 Identities=26% Similarity=0.428 Sum_probs=13.8
Q ss_pred CCCCCCCCccEEEecccccccChhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhcCCccccccchhHHHHH---
Q 024173 158 PLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYF--- 234 (271)
Q Consensus 158 pLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK~rsssWW~r~F--- 234 (271)
+.|||..|=|-= --=+---|| =-||.|.|.+--..|.|.| |-|- .|..-+||-|++|.+||
T Consensus 90 ~~pFRgRSrSAP----p~LwaA~rY----GreLRRMSDEF~~~fkGlp---rpkS-----agta~qM~~s~sw~~~~~s~ 153 (167)
T PF10514_consen 90 GSPFRGRSRSAP----PNLWAAQRY----GRELRRMSDEFDSSFKGLP---RPKS-----AGTATQMRQSRSWTRFLQSW 153 (167)
T ss_dssp ----------------GGGCHHHHH----HHHHHHHHHHHHCTS------------------------------------
T ss_pred CCCcccccccCC----hHHHHHHHH----hHHHHHhhHHHHhhhccCC---CCCC-----ccccccccccccHHHHHHHH
Confidence 578998886631 000112233 2478999988888888877 4443 47777899999999988
Q ss_pred HHhccccch
Q 024173 235 VQTSLEENE 243 (271)
Q Consensus 235 ~qt~LeEnE 243 (271)
..-++-+-+
T Consensus 154 ~~r~~~~g~ 162 (167)
T PF10514_consen 154 WSRNLGRGG 162 (167)
T ss_dssp ---------
T ss_pred hccccccCC
Confidence 544444433
No 98
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=30.84 E-value=12 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=25.9
Q ss_pred hcccccchhhcccCceEEEecCCCchhhh
Q 024173 183 LNKTLPDLARVASDGVLIFAGYPGQQRAK 211 (271)
Q Consensus 183 LNkTLPeLaRvsadglViF~G~Pgqqrak 211 (271)
||+..+|-+++-.+|..+|.|.||+...+
T Consensus 37 L~~~~~~~v~l~v~g~~~~~g~lg~~~~~ 65 (77)
T TIGR02480 37 LDKLAGEPLDILVNGRLIARGEVVVVEDK 65 (77)
T ss_pred cCCCCCCcEEEEECCEEEEEEEEEEECCE
Confidence 68889999999999999999999988654
No 99
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=30.80 E-value=1.6e+02 Score=25.24 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=58.6
Q ss_pred cceeeecCCchhHhHhhhc-ccccccccccccc--ccchhHHHHHHHhh-ceeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLk-Ee~tEAWGVEPyd--ied~d~~CKsLvrK-GiVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
.+||-+|-.|=..---+.+ -...+..|||+-+ ++-+..+++..--. --++.+|+.- ++. ..+|++|++. +...
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~-~~~-~~~fDlV~~~-~~~~ 123 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE-FGQ-EEKFDVVTSR-AVAS 123 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh-CCC-CCCccEEEEc-cccC
Confidence 4799999876543332322 3456888887754 23344444432211 1245566643 333 6799999964 3211
Q ss_pred cChhhhcccccchhh-cccCceEEEecCCCchhhhHHhhhhc
Q 024173 178 LSPKYLNKTLPDLAR-VASDGVLIFAGYPGQQRAKVAELSKF 218 (271)
Q Consensus 178 LspryLNkTLPeLaR-vsadglViF~G~Pgqqrakvaelskf 218 (271)
+-..+-+++| +..+|.+++.=.+.+. +.+.+++++
T Consensus 124 -----~~~~l~~~~~~LkpGG~lv~~~~~~~~-~~l~~~~~~ 159 (187)
T PRK00107 124 -----LSDLVELCLPLLKPGGRFLALKGRDPE-EEIAELPKA 159 (187)
T ss_pred -----HHHHHHHHHHhcCCCeEEEEEeCCChH-HHHHHHHHh
Confidence 1233334443 4567777766555444 556666664
No 100
>PRK04266 fibrillarin; Provisional
Probab=30.41 E-value=1.7e+02 Score=25.72 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=54.5
Q ss_pred cceeeecCCchhHhHhhhccc-ccccccccccc--ccchhHHHHHHHhhc-eeeeeeecCCCCCC--CCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYR--AKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR--~kSFslVivSDaL 175 (271)
.+||-+|-.|=.+...|.+.- ....+|||..+ ++....+|+.. .+ ....+|+.-|.+|. ..+|+.|+ +|.-
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~-~d~~ 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIY-QDVA 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEE-ECCC
Confidence 379999988755544444321 45788888765 45566666643 33 23456876543332 24688887 4432
Q ss_pred cccChhhhcccccchhh-cccCceEEEe
Q 024173 176 DYLSPKYLNKTLPDLAR-VASDGVLIFA 202 (271)
Q Consensus 176 DyLspryLNkTLPeLaR-vsadglViF~ 202 (271)
.|.-....|-++.| +...|.++++
T Consensus 151 ---~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 151 ---QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ---ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 23322334667776 4556666664
No 101
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=29.86 E-value=37 Score=27.53 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=50.7
Q ss_pred HhHhhhccccccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccccChhhhcccccchhhc
Q 024173 114 VVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV 193 (271)
Q Consensus 114 VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRv 193 (271)
++++.+.+++-.+.+.+-|..+--...+.+ -||++|=.-...++...++++|+.|. ..+++.+ ..+
T Consensus 11 ila~a~~~~G~~v~~~~~ygs~~rGG~~~~-----~vris~~~~~~~~~~~~~Dilv~l~~------~~~~~~~---~~l 76 (173)
T PF01558_consen 11 ILARAAAREGYYVQSTPEYGSEIRGGPVVS-----HVRISDEPIIPSPPVGEADILVALDP------EALERHL---KGL 76 (173)
T ss_dssp HHHHHHHHTTSEEEEEEEEESSSSSSCEEE-----EEEEESS--SSSS-TSSESEEEESSH------HHHHHCG---TTC
T ss_pred HHHHHHHHcCCCEEEEeCCChhhcCCeEEE-----EEEEecCcCccCcccCCCCEEEEcCH------HHHHHHh---cCc
Confidence 566777788888888888887654333322 46888831444555579999998765 3444333 347
Q ss_pred ccCceEEEecCC
Q 024173 194 ASDGVLIFAGYP 205 (271)
Q Consensus 194 sadglViF~G~P 205 (271)
..+|+||+-...
T Consensus 77 ~~~g~vi~ns~~ 88 (173)
T PF01558_consen 77 KPGGVVIINSSL 88 (173)
T ss_dssp ETTEEEEEETTT
T ss_pred CcCeEEEEECCC
Confidence 788999988743
No 102
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=29.22 E-value=24 Score=27.19 Aligned_cols=15 Identities=53% Similarity=0.968 Sum_probs=12.8
Q ss_pred hcCCccccccchhHH
Q 024173 217 KFGRPAKMRSSSWWI 231 (271)
Q Consensus 217 kfgrpaK~rsssWW~ 231 (271)
=|||.+|||+-+|=.
T Consensus 38 Gfgrs~r~R~y~W~~ 52 (61)
T COG2126 38 GFGRSARMRSYNWQA 52 (61)
T ss_pred CCCCccccccchhhh
Confidence 389999999999943
No 103
>PRK06922 hypothetical protein; Provisional
Probab=29.14 E-value=67 Score=33.79 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=61.1
Q ss_pred cceeeecCCchhHhHhhhc-ccccccccccccc--ccchhHHHHHHHhhc-eeeeeeecCCCC--CCCCCccEEEecccc
Q 024173 102 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLP--YRAKSFPLVIVSDAL 175 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLk-Ee~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLP--YR~kSFslVivSDaL 175 (271)
.+||-||-.|=.+...|.+ -.+.+..|++... ++.+..+++.. ... -+..+|+. .|| +.+.||++|+.+-++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~-dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAI-NLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchH-hCccccCCCCEEEEEEchHH
Confidence 4899999888544444433 2456888887765 44444443221 011 12346753 345 778899999988766
Q ss_pred ccc-----------Chhhhcccccchhhccc-CceEEEe
Q 024173 176 DYL-----------SPKYLNKTLPDLARVAS-DGVLIFA 202 (271)
Q Consensus 176 DyL-----------spryLNkTLPeLaRvsa-dglViF~ 202 (271)
..+ .+..+.+.|-++.|+-. +|.+|+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 543 24677788888888754 5566664
No 104
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=27.83 E-value=48 Score=32.06 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=20.9
Q ss_pred ccCCCCcccccccccccCCCCchhhHHHHHHHHhh
Q 024173 12 LVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLL 46 (271)
Q Consensus 12 ~gd~G~~~~~g~~~sKSrsspllsi~lv~vgaill 46 (271)
+|+.|.+. ..+-.|||-|+.|++|.|++-+.+|+
T Consensus 257 LGe~Gl~~-~SSnss~S~s~~l~piil~IG~vl~i 290 (305)
T PF04639_consen 257 LGENGLIT-KSSNSSKSVSDSLLPIILIIGGVLLI 290 (305)
T ss_pred cCcccccc-cccCccchhhhhhhHHHHHHHHHHHH
Confidence 45666433 23445688888899987766554443
No 105
>PF03815 LCCL: LCCL domain; InterPro: IPR004043 The LCCL domain has been named after the best characterised proteins that were found to contain it, namely Limulus factor C, Coch-5b2 and Lgl1. It is an about 100 amino acids domain whose C-terminal part contains a highly conserved histidine in a conserved motif YxxxSxxCxAAVHxGVI. The LCCL module is thought to be an autonomously folding domain that has been used for the construction of various modular proteins through exon-shuffling. It has been found in various metazoan proteins in association with complement B-type domains, C-type lectin domains, von Willebrand type A domains, CUB domains, discoidin lectin domains or CAP domains. It has been proposed that the LCCL domain could be involved in lipopolysaccharide (LPS) binding [, ]. Secondary structure prediction suggests that the LCCL domain contains six beta strands and two alpha helices []. Some proteins known to contain a LCCL domain include Limulus factor C, a LPS endotoxin-sensitive trypsin type serine protease which serves to protect the organism from bacterial infection; vertebrate cochlear protein cochlin or coch-5b2 (Cochlin is probably a secreted protein, mutations affecting the LCCL domain of coch-5b2 cause the deafness disorder DFNA9 in humans); and mammalian late gestation lung protein Lgl1, contains two tandem copies of the LCCL domain [].; PDB: 1JBI_A.
Probab=27.66 E-value=33 Score=26.88 Aligned_cols=40 Identities=20% Similarity=0.567 Sum_probs=26.1
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhcee
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIV 150 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiV 150 (271)
.+++=.=|.-| .+++...||-.+|. +-++-|++-|+-|++
T Consensus 19 ~~~~v~CP~~C-------~~~~~~v~Gt~~Y~--~~SsIC~AAIHaGvi 58 (96)
T PF03815_consen 19 TSFTVRCPAGC-------SDSKGTVYGTDVYS--ADSSICKAAIHAGVI 58 (96)
T ss_dssp SEEEEEE-S----------SSS--EESSSSEE--TTSBHHHHHHHHTSS
T ss_pred ceEEEECCCCC-------CCCCCeEECCcccc--CCCHHHHHHHhCCEE
Confidence 34444557888 24448999999997 557899999999987
No 106
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=27.40 E-value=33 Score=26.82 Aligned_cols=58 Identities=17% Similarity=0.407 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHhhhhhhccCCCccCCccchhhhhcccccccccccCccchHHHHhHhHHHHHHhcc
Q 024173 33 LLSVGLVLVGAFLLIGYAFSGSGIFGGDKAAVSRIEGELCLHLVHCDFSCTSEIQRAIPILKKAYGD 99 (271)
Q Consensus 33 llsi~lv~vgailli~Y~ysgsg~~~~~~~avs~~eg~l~~h~~h~d~sct~eV~~AiP~LkkaYGd 99 (271)
++-+.+.++.+++++++...+-+......+.|.+++| ..-=..|+.+.+-..++.|+.
T Consensus 11 ~~~~~~~iv~~~~~l~~~~~~~~~~~~~~~~vA~V~g---------~~It~~e~~~~~~~~~~~~~~ 68 (154)
T PF13624_consen 11 VFKILIGIVLAIFVLAFGIGGCGSGSSNNNVVAKVNG---------EKITKSELDRRVQRYSRQYQQ 68 (154)
T ss_dssp ------------------------------EEEEETT---------EEEEHHHHHHHHHHHHHHTT-
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhccCCCCCEEEEECC---------EEeCHHHHHHHHHHHHHHHHh
Confidence 4444444444444444222222221234567889998 444456777777777777774
No 107
>PLN02366 spermidine synthase
Probab=27.25 E-value=1.7e+02 Score=27.24 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=64.2
Q ss_pred chHHHHhHhHHHHHHhcccccceeeecCCchhHhHhhhccccccccccccccccc-hhHHHHHHHhh---c------eee
Q 024173 82 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHK---G------IVR 151 (271)
Q Consensus 82 ct~eV~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied-~d~~CKsLvrK---G------iVR 151 (271)
.-.|.+-.+|++. =..-++||.||=.+..++..+++-.. ...|.--||+. +-..||....+ | -+.
T Consensus 76 ~Y~e~l~h~~l~~---~~~pkrVLiIGgG~G~~~rellk~~~--v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi 150 (308)
T PLN02366 76 AYQEMITHLPLCS---IPNPKKVLVVGGGDGGVLREIARHSS--VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLH 150 (308)
T ss_pred HHHHHHHHHHHhh---CCCCCeEEEEcCCccHHHHHHHhCCC--CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEE
Confidence 3345555566642 23357899999999999999987632 23333444544 44556664321 2 134
Q ss_pred eeeecCCCC-CCCCCccEEEecccccccCh-------hhhcccccchhhcccCceEEE-ecCCCc
Q 024173 152 VADIKFPLP-YRAKSFPLVIVSDALDYLSP-------KYLNKTLPDLARVASDGVLIF-AGYPGQ 207 (271)
Q Consensus 152 vADIkfpLP-YR~kSFslVivSDaLDyLsp-------ryLNkTLPeLaRvsadglViF-~G~Pgq 207 (271)
++|----+. .-.+.|++||+ |+-|--.| .++... ..++..||+++. ++.|-.
T Consensus 151 ~~Da~~~l~~~~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~---~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 151 IGDGVEFLKNAPEGTYDAIIV-DSSDPVGPAQELFEKPFFESV---ARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EChHHHHHhhccCCCCCEEEE-cCCCCCCchhhhhHHHHHHHH---HHhcCCCcEEEECcCCccc
Confidence 466311111 11467999886 66553222 223221 236788999865 334443
No 108
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=27.01 E-value=2.8e+02 Score=24.95 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=60.3
Q ss_pred cceeeecCCchhHhHhhhccccccccccccccccch-hHHH-HHHHhhc-ee----eeeeecC--CCCCCC-CCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDA-DARC-KSLVHKG-IV----RVADIKF--PLPYRA-KSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPydied~-d~~C-KsLvrKG-iV----RvADIkf--pLPYR~-kSFslViv 171 (271)
.+||-+|..|+.....|++.-.. ..-|-+.|+... =..| +.|.+.. -+ -.+|+-- ++|-.. .+..+++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46999999999999989876421 122444555542 1333 3344322 12 2477753 344322 22455666
Q ss_pred cc-cccccChhhhcccccchhhccc-CceEEE
Q 024173 172 SD-ALDYLSPKYLNKTLPDLARVAS-DGVLIF 201 (271)
Q Consensus 172 SD-aLDyLspryLNkTLPeLaRvsa-dglViF 201 (271)
++ .+-+++|......|-+++++=. +|.++|
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 55 6777899999999999988754 455555
No 109
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=26.64 E-value=1.2e+02 Score=26.30 Aligned_cols=81 Identities=27% Similarity=0.272 Sum_probs=47.9
Q ss_pred ccceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHHHhhc-eeeeeee-cCCCCCCCCCcc--EEEeccc
Q 024173 101 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADI-KFPLPYRAKSFP--LVIVSDA 174 (271)
Q Consensus 101 M~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADI-kfpLPYR~kSFs--lVivSDa 174 (271)
=..||.+||.+-.+-..|++.. ....+||+-+ ++.+..++.. ..+ -+..+|+ ++|++ +|. .+|+|+.
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~----~~d~~~~vvsNl 102 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP----DFPKQLKVVSNL 102 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh----HcCCcceEEEcC
Confidence 3579999999999888887665 5677777632 1111111111 011 1344565 34444 343 6788887
Q ss_pred ccccChhhhccccc
Q 024173 175 LDYLSPKYLNKTLP 188 (271)
Q Consensus 175 LDyLspryLNkTLP 188 (271)
--+++...|.+.|-
T Consensus 103 Py~i~~~il~~ll~ 116 (253)
T TIGR00755 103 PYNISSPLIFKLLE 116 (253)
T ss_pred ChhhHHHHHHHHhc
Confidence 76677777777664
No 110
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=26.51 E-value=1.4e+02 Score=22.84 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=27.2
Q ss_pred EEEecccccccChhhhcc---------cccchhhcccCceEEEecCCCch
Q 024173 168 LVIVSDALDYLSPKYLNK---------TLPDLARVASDGVLIFAGYPGQQ 208 (271)
Q Consensus 168 lVivSDaLDyLspryLNk---------TLPeLaRvsadglViF~G~Pgqq 208 (271)
..+++|.-.-+..+|=-. .+|...=|+.||.|+..+.+.+.
T Consensus 87 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 87 FPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp SEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 344666444444443333 79999999999999998855444
No 111
>PF14035 YlzJ: YlzJ-like protein
Probab=26.46 E-value=24 Score=26.41 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=12.5
Q ss_pred EEecccccccChhh
Q 024173 169 VIVSDALDYLSPKY 182 (271)
Q Consensus 169 VivSDaLDyLspry 182 (271)
+|-+|.-|||.|+|
T Consensus 46 llStnP~dYLnp~~ 59 (66)
T PF14035_consen 46 LLSTNPQDYLNPDY 59 (66)
T ss_pred EecCChHHHcCccC
Confidence 57799999999998
No 112
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=25.94 E-value=95 Score=31.65 Aligned_cols=117 Identities=19% Similarity=0.148 Sum_probs=66.3
Q ss_pred cceeeecCCchhHhHhhhccccccccccccc--cccchhHHHHHHHhhce------eeeeeecCCCCCCCCCccEEEec-
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGI------VRVADIKFPLPYRAKSFPLVIVS- 172 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPy--died~d~~CKsLvrKGi------VRvADIkfpLPYR~kSFslVivS- 172 (271)
++||.+|=.||..--.+++.+..+.-+||-. -++-+..|.+. .|+ +..+|+-=.|.-..++|++||+-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~---ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL---NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH---hCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 6899999999999888887665567777643 23444444432 233 33467522222114689998751
Q ss_pred ----------ccccccC-hhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhcCCccc
Q 024173 173 ----------DALDYLS-PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAK 223 (271)
Q Consensus 173 ----------DaLDyLs-pryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK 223 (271)
+..+... -+-||+... ..+..+|+++|...+.+.....+.+.+.|+.++
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~--~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~ 676 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAK--RLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAE 676 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHH--HHcCCCCEEEEEeCCccCChhHHHHHhCCCeEE
Confidence 1000000 011222222 236679999998888776555555555555443
No 113
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=25.89 E-value=60 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=30.0
Q ss_pred ecCCchhHhHhhhccccccccccccccccchhHHHHHHHhhceeeee
Q 024173 107 VGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVA 153 (271)
Q Consensus 107 VGPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvA 153 (271)
.|||.=..+++.+ -.+++++...|+.|.+.|+|.=-
T Consensus 19 ~~~Dy~k~ia~~l-----------~~~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 19 AGPDYAKSIARRL-----------KIPLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred HCCCcHHHHHHHH-----------CCCHHHHHHHHHHHHHCCCeEEe
Confidence 5899888888876 35788999999999999998643
No 114
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=25.72 E-value=18 Score=32.54 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=26.6
Q ss_pred hcccccchhhcccCceEEEecCCCchhhh
Q 024173 183 LNKTLPDLARVASDGVLIFAGYPGQQRAK 211 (271)
Q Consensus 183 LNkTLPeLaRvsadglViF~G~Pgqqrak 211 (271)
||++.++-+.|..+|.-+|.|.||+.+.+
T Consensus 282 L~~~~~~~v~v~v~g~~~f~g~~G~~~~~ 310 (320)
T TIGR01397 282 LNTDMPEEVSLRVGGRPKFRAQPGVRGGK 310 (320)
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCE
Confidence 68999999999999999999999998655
No 115
>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
Probab=25.29 E-value=18 Score=34.19 Aligned_cols=106 Identities=22% Similarity=0.422 Sum_probs=77.2
Q ss_pred hHHHHHHhcccccceeeecCCchhHhHhhhccccc--cccccccccccchhHHHHHHHhhceee--eeee----cCCCCC
Q 024173 90 IPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEET--EAWGVEPYDIEDADARCKSLVHKGIVR--VADI----KFPLPY 161 (271)
Q Consensus 90 iP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe~t--EAWGVEPydied~d~~CKsLvrKGiVR--vADI----kfpLPY 161 (271)
-++|+..+|. -|||+-++|+ ++.| ..+|--|||=|=+-+.++.||++|+++ +.|. |+.++-
T Consensus 260 s~~~~~~~G~------~v~se~lti~-----Ddp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~yl~~~~sA~~~G~~~ 328 (454)
T COG0312 260 SSLLADKLGK------RVASELLTII-----DDPTLPGGLGSYPFDDEGVPTRRTVLIENGVLKGYLHDRYSARKLGLES 328 (454)
T ss_pred chHhhhhhhh------hhcCceeEEE-----eCCCCCCCccCcccCCCCCccceeEEEEcCEEeehhcchhhHHHhCCCc
Confidence 4557777777 6899999987 4444 479999999999999999999999986 3444 456776
Q ss_pred ----CCCCccEEEeccc-ccccChhhhcccccchhhcccCceEEEecCCCch
Q 024173 162 ----RAKSFPLVIVSDA-LDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQ 208 (271)
Q Consensus 162 ----R~kSFslVivSDa-LDyLspryLNkTLPeLaRvsadglViF~G~Pgqq 208 (271)
|..||+.+...-. =-|+.|- +.++-||-+=--+||.|-.-.=||.
T Consensus 329 TGnar~~~~~~~p~~rm~N~~i~~G--~~s~eeli~~~~~Giyv~~~~gg~~ 378 (454)
T COG0312 329 TGNARRGSYAHVPIPRMTNTYIEPG--DYSFEELIEDVKRGLYVTNLWGGQN 378 (454)
T ss_pred CcccccccCCcCCccceecccccCC--CCCHHHHHHhhCcEEEEecccCcee
Confidence 6677765544333 2477888 8888888777777887754322665
No 116
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=25.22 E-value=2.4e+02 Score=25.37 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=39.4
Q ss_pred cceeeecCCchhHhHhhhccc-cccccccccc--cccchhHHHHHHHhhce-----eeeeeecCCCCCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPY--DIEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPy--died~d~~CKsLvrKGi-----VRvADIkfpLPYR~kSFslViv 171 (271)
.+||-+|-.|..+.-.|.+.- ..+..|||.. -++-+..|.+. .|+ +..+|+--++| ..+|++||.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~---~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER---HGLEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH---cCCCCcEEEEECchhhccC--CCCccEEEE
Confidence 479999999987766666543 4566676543 23334444432 243 35577643443 457998875
No 117
>PRK06033 hypothetical protein; Validated
Probab=25.01 E-value=17 Score=28.05 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=26.0
Q ss_pred hcccccchhhcccCceEEEecCCCchhhh
Q 024173 183 LNKTLPDLARVASDGVLIFAGYPGQQRAK 211 (271)
Q Consensus 183 LNkTLPeLaRvsadglViF~G~Pgqqrak 211 (271)
||++.+|-..+-.+|..+|.|.||..+.+
T Consensus 36 L~~~~~~~v~v~V~~~~~f~g~~G~~~~~ 64 (83)
T PRK06033 36 LDATEADEVWILANNHPIARGEVLIDRNR 64 (83)
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCE
Confidence 68888899999999999999999987654
No 118
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=24.85 E-value=52 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=20.3
Q ss_pred HHhhhhcCCccccccchhHHHHHHHh
Q 024173 212 VAELSKFGRPAKMRSSSWWIRYFVQT 237 (271)
Q Consensus 212 vaelskfgrpaK~rsssWW~r~F~qt 237 (271)
++++-+=--|.+|-....|.|||..-
T Consensus 22 l~~~~~~lVP~~~se~~FW~ryF~~~ 47 (51)
T smart00751 22 LKKLYNELVPKVLSEEEFWARYFYLL 47 (51)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 44455556799999999999999754
No 119
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=24.67 E-value=3e+02 Score=23.58 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=57.4
Q ss_pred cceeeecCCchhHhHhhhccc--cccccccccccccchhHHHHHHHhhceeeeeeecCCC-------CCCCCCccEEEec
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPL-------PYRAKSFPLVIVS 172 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe--~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpL-------PYR~kSFslVivS 172 (271)
.+||-+|..|......|++.- ....-|||+-++..... | .+..+|+.-+- +...++|++|+..
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~-----v---~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVG-----V---DFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCC-----c---EEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 579999999998877777653 35788888876543210 1 13445655431 3557899987764
Q ss_pred ccccccChhh---------hcccccchhhcc-cCceEEEecCCC
Q 024173 173 DALDYLSPKY---------LNKTLPDLARVA-SDGVLIFAGYPG 206 (271)
Q Consensus 173 DaLDyLspry---------LNkTLPeLaRvs-adglViF~G~Pg 206 (271)
=+..+..-.. +...|-+..|+- .+|.+++.-+.+
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 3344432111 234566666665 456776654433
No 120
>PF08346 AntA: AntA/AntB antirepressor; InterPro: IPR013557 In Escherichia coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the Bacteriophage 933W.
Probab=24.51 E-value=54 Score=24.94 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=27.6
Q ss_pred HHhhhhcCCccccccchhHHHHHHHhccccchHH
Q 024173 212 VAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPA 245 (271)
Q Consensus 212 vaelskfgrpaK~rsssWW~r~F~qt~LeEnE~a 245 (271)
++||-+|.-- |-+-++|+.+-..+.++.||+.-
T Consensus 3 AR~Lh~~L~v-~~~Fs~Wik~ri~~y~f~e~~Df 35 (71)
T PF08346_consen 3 ARDLHEFLEV-KKRFSTWIKRRIEEYGFVENVDF 35 (71)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHhhhcCcccCCCc
Confidence 5677777754 88999999999999999999764
No 121
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=24.33 E-value=2.4e+02 Score=25.86 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=39.1
Q ss_pred cceeeecCCchhHhHhhhccc-ccccccccc--ccccchhHHHHHHHhhc--eeeeeeecCCCCCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEP--YDIEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEP--ydied~d~~CKsLvrKG--iVRvADIkfpLPYR~kSFslViv 171 (271)
.+||-+|-.+..+--.|.++- ..+..|+|. --++-+..|++.+--.. -+..+|+--++| ..+|++||.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEE
Confidence 479999999988766666543 345555543 33444555554331111 134567643554 457999886
No 122
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=24.30 E-value=92 Score=28.96 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=76.6
Q ss_pred cceeee--cCCchhHhHhhhccccccccccccccccchhHHHHHHHhhceeeeeeecCCCCCCCCCccEEEecccccccC
Q 024173 102 HKVLHV--GPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 179 (271)
Q Consensus 102 ~kVLHV--GPdtC~VVs~LLkEe~tEAWGVEPydied~d~~CKsLvrKGiVRvADIkfpLPYR~kSFslVivSDaLDyLs 179 (271)
++||-. |++--++.+.+.--.+.-+=++.||-+...+-|-++=.-.=.+-.+|+-+ -+.-|.+|+++|.. -.
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlf--y~ 154 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLF--YN 154 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeecee--cC
Confidence 567765 56666777777766666666888998888887777644111122344444 56789999999974 33
Q ss_pred hhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhc
Q 024173 180 PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKF 218 (271)
Q Consensus 180 pryLNkTLPeLaRvsadglViF~G~Pgqqrakvaelskf 218 (271)
+-.=-|.+|-+.|..+-|..++.|-||-..--...|..|
T Consensus 155 ~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~ 193 (218)
T COG3897 155 HTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFL 193 (218)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhh
Confidence 444456678899999999999999999765444455444
No 123
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=24.18 E-value=49 Score=24.06 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=38.9
Q ss_pred cceeeecCCchhHhHhhhcccccccccccccc--ccchhHHHHHH--HhhceeeeeeecCCC-CCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSL--VHKGIVRVADIKFPL-PYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkEe~tEAWGVEPyd--ied~d~~CKsL--vrKGiVRvADIkfpL-PYR~kSFslViv 171 (271)
.+||.+|-.+..+...+++....+..|||--+ ++-+-.+-+.. -.+=-+.++|+.-.. +++..+|++||.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 37899999999999888877645556655321 11122221111 011235566664444 466677777664
No 124
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=23.84 E-value=1.9e+02 Score=23.97 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=61.9
Q ss_pred cceeeecCCchhHhHhhhcc--cccccccccccc--ccchhHHHHHHHhhce-----eeeeeecCCCCCCCCCccEEEec
Q 024173 102 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIVS 172 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE--e~tEAWGVEPyd--ied~d~~CKsLvrKGi-----VRvADIkfpLPYR~kSFslVivS 172 (271)
..||-+|..|-.+-..+++. ......+||.-+ ++-+..|++.+ |+ +...|..--+|....+|++||+.
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~---g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF---GVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh---CCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 36999999996665544432 345688887643 34344455433 32 22344432244444689999873
Q ss_pred ccccccChhhhcccccchhh-cccCceEEE-ecCCCchhhhHHhhhhcCCccc
Q 024173 173 DALDYLSPKYLNKTLPDLAR-VASDGVLIF-AGYPGQQRAKVAELSKFGRPAK 223 (271)
Q Consensus 173 DaLDyLspryLNkTLPeLaR-vsadglViF-~G~PgqqrakvaelskfgrpaK 223 (271)
-.. ..+-..|.++.| +...|.+++ +-.+.+.+.-...|.+.|...+
T Consensus 119 ~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 119 GGS-----EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLE 166 (198)
T ss_pred CCc-----ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeE
Confidence 211 112233445443 456787665 3355555555556666665433
No 125
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=22.61 E-value=33 Score=33.01 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=29.3
Q ss_pred ccccccChhhhcccccchhhcccCceEEEec-CCCchhhhHHhhh
Q 024173 173 DALDYLSPKYLNKTLPDLARVASDGVLIFAG-YPGQQRAKVAELS 216 (271)
Q Consensus 173 DaLDyLspryLNkTLPeLaRvsadglViF~G-~Pgqqrakvaels 216 (271)
...+|||-.-|..|+-|.|..-+|||||--+ +=-+-+.+-.+|.
T Consensus 274 ~~~~fLs~~DL~~TigesaalGa~GvViWG~s~~~~s~~~C~~l~ 318 (337)
T PF01630_consen 274 STDEFLSQEDLVNTIGESAALGAAGVVIWGSSNDVNSKESCQKLR 318 (337)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT-SEEEEE--GGGSSSHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHcCCCeEEEeeccccccChHHHHHHH
Confidence 4689999999999999999999999999876 2233334444443
No 126
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=22.50 E-value=3.4e+02 Score=23.97 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=69.1
Q ss_pred hHhHHHHHHhc-ccccceeeecCCchhHhHhhhccc-cccccccccccccchhHHHHHHH-hhce-----eeeeeec-CC
Q 024173 88 RAIPILKKAYG-DSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLV-HKGI-----VRVADIK-FP 158 (271)
Q Consensus 88 ~AiP~LkkaYG-dsM~kVLHVGPdtC~VVs~LLkEe-~tEAWGVEPydied~d~~CKsLv-rKGi-----VRvADIk-fp 158 (271)
.+.+.+-+... ....+||-||-.+-.+.-.+++.- +...-++ |++.+-..++.-+ +.|+ +...|+- .+
T Consensus 136 ~~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~---D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 136 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL---NLPGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred hHHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEE---ecHHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 34554444443 456799999999988888888774 3445555 4444444444332 3343 3445652 34
Q ss_pred CCCCCCCccEEEecccccccChhhhcccccchhhc-ccCceEEEec
Q 024173 159 LPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGVLIFAG 203 (271)
Q Consensus 159 LPYR~kSFslVivSDaLDyLspryLNkTLPeLaRv-sadglViF~G 203 (271)
+| .+++|+++..|-..++....+-|-++.|+ ...|.+++.-
T Consensus 213 ~~----~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 213 YP----EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CC----CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 43 47999999999888887666667777654 4578777764
No 127
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=22.48 E-value=1.3e+02 Score=25.22 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=45.9
Q ss_pred EEEecccccccChhhh-cccccchhhcccCceEEEecCCCchhhhHHhhh--------hcCCccccccchhHHHHHHH
Q 024173 168 LVIVSDALDYLSPKYL-NKTLPDLARVASDGVLIFAGYPGQQRAKVAELS--------KFGRPAKMRSSSWWIRYFVQ 236 (271)
Q Consensus 168 lVivSDaLDyLspryL-NkTLPeLaRvsadglViF~G~Pgqqrakvaels--------kfgrpaK~rsssWW~r~F~q 236 (271)
+||++|..-- .+++ +++.+-+-+++.+-++.++|..|-.+.-...+. ++|++...++-..|.+...|
T Consensus 39 VvlaaD~~~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~ 114 (209)
T cd01911 39 VVLAVEKKVT--SKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQ 114 (209)
T ss_pred EEEEEEecCC--ccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4666776542 3333 356777888999999999998876544443332 67888888888888776554
No 128
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=22.34 E-value=2.4e+02 Score=24.88 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=60.2
Q ss_pred ceeeecCCchhHhHhhhccc-ccccccccc--ccccchhHHHHHHHhhc-eeeeeeecCCCCCC-CCCccEEEecc----
Q 024173 103 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEP--YDIEDADARCKSLVHKG-IVRVADIKFPLPYR-AKSFPLVIVSD---- 173 (271)
Q Consensus 103 kVLHVGPdtC~VVs~LLkEe-~tEAWGVEP--ydied~d~~CKsLvrKG-iVRvADIkfpLPYR-~kSFslVivSD---- 173 (271)
+||-+|-.+-.+--.|.++- ..+.+|||. --++.+..|.+. .| -+..+|+.-+++-. .++|++||+ |
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---~~~~~~~~D~~~~l~~~~~~~fDlVv~-NPPy~ 164 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---AGGTVHEGDLYDALPTALRGRVDILAA-NAPYV 164 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCEEEEeechhhcchhcCCCEeEEEE-CCCCC
Confidence 79999988866655555442 346778764 334445555443 23 35667875455421 256998653 3
Q ss_pred ---cccccChhhhcc----c----------ccchh-----hcccCceEEEecCCCchhhhHHhhhhcC
Q 024173 174 ---ALDYLSPKYLNK----T----------LPDLA-----RVASDGVLIFAGYPGQQRAKVAELSKFG 219 (271)
Q Consensus 174 ---aLDyLspryLNk----T----------LPeLa-----RvsadglViF~G~Pgqqrakvaelskfg 219 (271)
.+..+.|.-.+- . +.++. .+..+|.+++.--+.|..+-.+.+.|.|
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g 232 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAG 232 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCC
Confidence 233333321000 0 11111 3566788888777777644344454544
No 129
>PRK10927 essential cell division protein FtsN; Provisional
Probab=22.15 E-value=1.1e+02 Score=29.68 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=42.5
Q ss_pred CceEEEec---CCCchhhhHHhhhhcCCccccccchhHHHHHHHhccccchHHHHHHHHHHhhccCCCCceeee
Q 024173 196 DGVLIFAG---YPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAVKKFEQAASKKSYKPNCQVFH 266 (271)
Q Consensus 196 dglViF~G---~PgqqrakvaelskfgrpaK~rsssWW~r~F~qt~LeEnE~a~KkFeqa~~k~sY~p~cqiFH 266 (271)
...+|=.| ...+-..-.++|...|=+|......=|.|-++ |-..+.+...+=.......++ .+|-+++
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrV--GPf~sr~eAe~a~~rLk~aGi-s~ci~~a 316 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVI--GPVKGKENADSTLNRLKMAGH-TNCIRLA 316 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEe--CCCCCHHHHHHHHHHHHHCCC-Cceeecc
Confidence 55888888 45555566788999998988876544667555 444444444333333333455 7787765
No 130
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.11 E-value=96 Score=25.18 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=28.4
Q ss_pred ChhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhcCCcc
Q 024173 179 SPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPA 222 (271)
Q Consensus 179 spryLNkTLPeLaRvsadglViF~G~Pgqqrakvaelskfgrpa 222 (271)
+|.--+..+-++..-..||+|+..+.+.....-+.++.+.|-|+
T Consensus 40 ~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipv 83 (273)
T cd06305 40 DDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPV 83 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCE
Confidence 45544445555555567999888776665555567777777664
No 131
>PRK07402 precorrin-6B methylase; Provisional
Probab=22.07 E-value=1.9e+02 Score=23.74 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=50.8
Q ss_pred cceeeecCCchhHhHhhhcc-cccccccccccc--ccchhHHHHHHHhhc-eeeeeeecCCCCCCCCCccEEEecccccc
Q 024173 102 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 177 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLvrKG-iVRvADIkfpLPYR~kSFslVivSDaLDy 177 (271)
..||-+|..|-.+-..+.+. .+.+..|||+.. ++-+..||+.+--.. -+..+|+.-.++.=...+..|++ |.
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~-~~--- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCI-EG--- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEE-EC---
Confidence 47999999999875555432 357899999753 445666666442111 12224443222221222344433 22
Q ss_pred cChhhhcccccchhhcc-cCceEEEec
Q 024173 178 LSPKYLNKTLPDLARVA-SDGVLIFAG 203 (271)
Q Consensus 178 LspryLNkTLPeLaRvs-adglViF~G 203 (271)
.+++.+.|.++.|+= ..|.+++.-
T Consensus 118 --~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 118 --GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred --CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 234556677776554 445544443
No 132
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=21.94 E-value=53 Score=23.01 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.7
Q ss_pred chhHHHHHHHhhceeeeeeec
Q 024173 136 DADARCKSLVHKGIVRVADIK 156 (271)
Q Consensus 136 d~d~~CKsLvrKGiVRvADIk 156 (271)
.+...-++|+++|+|+..+-+
T Consensus 38 ~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 38 TVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEcCc
Confidence 456778999999999998855
No 133
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=21.93 E-value=91 Score=25.61 Aligned_cols=51 Identities=33% Similarity=0.380 Sum_probs=31.2
Q ss_pred cccccccChhhhcccccchhhcccCceEEEecCCCch-hhhHHhhhhcCCcccc
Q 024173 172 SDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQ-RAKVAELSKFGRPAKM 224 (271)
Q Consensus 172 SDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqq-rakvaelskfgrpaK~ 224 (271)
.+..+..++.-.++.+-.+.+ -.||+|+.... .+. ..-+.++.|.|-|+=+
T Consensus 37 ~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~~-~~~~~~~i~~~~~~~ipvV~ 88 (275)
T cd06307 37 IHFVESFDPAALAAALLRLGA-RSDGVALVAPD-HPQVRAAVARLAAAGVPVVT 88 (275)
T ss_pred EEEccCCCHHHHHHHHHHHHh-cCCEEEEeCCC-cHHHHHHHHHHHHCCCcEEE
Confidence 333344556556666666666 78999876433 332 2446778888888654
No 134
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=21.85 E-value=2.9e+02 Score=27.22 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=38.9
Q ss_pred cceeeecCCchhHhHhhhcc-cccccccccccc--ccchhHHHHHHHhhceee--eeeecCCCCCCCCCccEEEe
Q 024173 102 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKGIVR--VADIKFPLPYRAKSFPLVIV 171 (271)
Q Consensus 102 ~kVLHVGPdtC~VVs~LLkE-e~tEAWGVEPyd--ied~d~~CKsLvrKGiVR--vADIkfpLPYR~kSFslViv 171 (271)
.+||-+|-.|-.+--.|+++ .+.+..|||..+ ++-+..|.+..--..-|+ ..|+--++| ..+|++||.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvs 212 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVS 212 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEE
Confidence 47999999997776666655 356777776542 444444543321011133 345432333 457998774
No 135
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=21.73 E-value=50 Score=31.33 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=14.2
Q ss_pred eEEEecCCCchhhh-HHhhhhc
Q 024173 198 VLIFAGYPGQQRAK-VAELSKF 218 (271)
Q Consensus 198 lViF~G~Pgqqrak-vaelskf 218 (271)
|||||||||--|.- ..||.|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHH
Confidence 79999999986643 2344443
No 136
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.63 E-value=65 Score=27.03 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=8.6
Q ss_pred HHHHHhhhhhhc
Q 024173 40 LVGAFLLIGYAF 51 (271)
Q Consensus 40 ~vgailli~Y~y 51 (271)
++|+||||.|+-
T Consensus 77 vIg~Illi~y~i 88 (122)
T PF01102_consen 77 VIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677888876
No 137
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=21.48 E-value=37 Score=30.48 Aligned_cols=10 Identities=70% Similarity=1.248 Sum_probs=9.1
Q ss_pred eeecCCCCCC
Q 024173 153 ADIKFPLPYR 162 (271)
Q Consensus 153 ADIkfpLPYR 162 (271)
++||||||.|
T Consensus 141 ~kikFPL~~r 150 (169)
T KOG0829|consen 141 SKIKFPLPHR 150 (169)
T ss_pred cCcccccccc
Confidence 5799999999
No 138
>PRK08433 flagellar motor switch protein; Validated
Probab=21.19 E-value=23 Score=29.15 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=25.7
Q ss_pred hcccccchhhcccCceEEEecCCCchhhh
Q 024173 183 LNKTLPDLARVASDGVLIFAGYPGQQRAK 211 (271)
Q Consensus 183 LNkTLPeLaRvsadglViF~G~Pgqqrak 211 (271)
||+...|-..|-.+|..+|.|.||+...+
T Consensus 61 Ld~~~~e~v~v~V~g~~~f~G~~G~~~~k 89 (111)
T PRK08433 61 LEKPAGESVELYINGRIIGKGEVMVYEKN 89 (111)
T ss_pred eCCCCCCCEEEEECCEEEEEEEEEEECCE
Confidence 67877888999999999999999998755
No 139
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.87 E-value=74 Score=25.16 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=16.7
Q ss_pred hhHHHHHHHhccccchHHHHH
Q 024173 228 SWWIRYFVQTSLEENEPAVKK 248 (271)
Q Consensus 228 sWW~r~F~qt~LeEnE~a~Kk 248 (271)
.-|.+||-+-||.|||--.++
T Consensus 12 ~~wk~F~R~LGLsdn~Ie~~E 32 (77)
T cd08815 12 RRWKEFVRTLGLREAEIEAVE 32 (77)
T ss_pred HHHHHHHHHcCCcHhHHHHHH
Confidence 359999999999999944333
No 140
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=20.81 E-value=53 Score=29.74 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=10.9
Q ss_pred hHHHHHHHHhhhhhhcc
Q 024173 36 VGLVLVGAFLLIGYAFS 52 (271)
Q Consensus 36 i~lv~vgailli~Y~ys 52 (271)
++|..+..|.||+|+.+
T Consensus 279 ~~La~lvlivLiaYli~ 295 (306)
T PF01299_consen 279 AALAGLVLIVLIAYLIG 295 (306)
T ss_pred HHHHHHHHHHHHhheeE
Confidence 34555566677888873
No 141
>PRK06762 hypothetical protein; Provisional
Probab=20.80 E-value=2.2e+02 Score=22.35 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=24.1
Q ss_pred eEEEecCCCchhhhHHhh--hhcCCccccccchhHHH
Q 024173 198 VLIFAGYPGQQRAKVAEL--SKFGRPAKMRSSSWWIR 232 (271)
Q Consensus 198 lViF~G~Pgqqrakvael--skfgrpaK~rsssWW~r 232 (271)
+|+++|.||-=|..+++. ..+|..+..-+..+|.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 789999999999887764 34555555445555554
No 142
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=20.79 E-value=1.2e+02 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=24.3
Q ss_pred HHhHhHHHHHHhcccccceeeecCCchhHhHhhh
Q 024173 86 IQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLL 119 (271)
Q Consensus 86 V~~AiP~LkkaYGdsM~kVLHVGPdtC~VVs~LL 119 (271)
+.++-|+|+ ++|...+++.|+||--..-..||+
T Consensus 142 ~~~~~~~l~-~~~~~~~~~~~~G~~g~a~~~Kl~ 174 (299)
T PRK12490 142 YDRLEPVFK-ALAPEGPGYVHAGPVGSGHFLKMV 174 (299)
T ss_pred HHHHHHHHH-HhcCcCCcEEEECCcCHHHHHHHH
Confidence 466778887 778766799999986655555554
No 143
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.73 E-value=1.9e+02 Score=26.39 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=82.1
Q ss_pred HhHhHHHHHHhccccc----ceeeecCCchhHhHhhhccccccccc---cccccccchhHHHHHHHhhceeeeeeecCCC
Q 024173 87 QRAIPILKKAYGDSMH----KVLHVGPDTCSVVSTLLKEEETEAWG---VEPYDIEDADARCKSLVHKGIVRVADIKFPL 159 (271)
Q Consensus 87 ~~AiP~LkkaYGdsM~----kVLHVGPdtC~VVs~LLkEe~tEAWG---VEPydied~d~~CKsLvrKGiVRvADIkfpL 159 (271)
.+++.++++.+.+=+. +.+|||=|-..-+.. ....+.|| ..---.+-....|+-+..+|.
T Consensus 113 ~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~---~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~---------- 179 (301)
T cd06565 113 PKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGR---GRSLRKHGNLGRGELYLEHLKKVLKIIKKRGP---------- 179 (301)
T ss_pred hhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCC---CHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCC----------
Confidence 5678888888776554 789999886543210 00111121 110112334445555555553
Q ss_pred CCCCCCccEEEecccccccChhhhcccccchhhcccCceEEEecCCC-ch--hhhHHhhhhcCCccccccchh-HHHHHH
Q 024173 160 PYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG-QQ--RAKVAELSKFGRPAKMRSSSW-WIRYFV 235 (271)
Q Consensus 160 PYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pg-qq--rakvaelskfgrpaK~rsssW-W~r~F~ 235 (271)
..++=.|.+..++ ..--.+.++..|-++..=.|-. +. .....-..+.|.+.-+-.-.| |.+++
T Consensus 180 -------~~~~W~D~~~~~~-----~~~~~~~~l~~~v~~~~W~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~- 246 (301)
T cd06565 180 -------KPMMWDDMLRKLS-----IEPEALSGLPKLVTPVVWDYYADLDEHDRPIGLWKKYGSVFAVAWGASAWKGAT- 246 (301)
T ss_pred -------EEEEEhHHhcCCC-----CChHHHhCCCCCeEEEEecCcCCcchhhHhHHHHHHhCCCceEeeeechhccCC-
Confidence 3566778876651 1111233455665655555433 33 367778888898888877777 88887
Q ss_pred HhccccchHHHHHHHHHHhhcc
Q 024173 236 QTSLEENEPAVKKFEQAASKKS 257 (271)
Q Consensus 236 qt~LeEnE~a~KkFeqa~~k~s 257 (271)
...+..-+..|.|-+++.+..
T Consensus 247 -~~~~~~~~n~~~~~~~~~~~~ 267 (301)
T cd06565 247 -PPNDKHLENIKSWLKAAKKNG 267 (301)
T ss_pred -CCHHHHHHHHHHHHHHHHHCC
Confidence 555555666777777775543
No 144
>PF15060 PPDFL: Differentiation and proliferation regulator
Probab=20.72 E-value=16 Score=30.75 Aligned_cols=16 Identities=31% Similarity=0.910 Sum_probs=12.3
Q ss_pred ccccchhHHHHHHHhc
Q 024173 223 KMRSSSWWIRYFVQTS 238 (271)
Q Consensus 223 K~rsssWW~r~F~qt~ 238 (271)
|.-...||..||....
T Consensus 48 kad~g~WW~sfFF~k~ 63 (110)
T PF15060_consen 48 KADPGHWWASFFFGKS 63 (110)
T ss_pred ccCCCcceEEeEeccc
Confidence 5567899999987543
No 145
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=20.46 E-value=4.7e+02 Score=22.08 Aligned_cols=187 Identities=20% Similarity=0.237 Sum_probs=96.0
Q ss_pred CCchhhHH-HHHHHHhhhhhhccCCCccCCccch------------hhhhcccccc-ccccc--CccchHHHHhHhHHHH
Q 024173 31 SPLLSVGL-VLVGAFLLIGYAFSGSGIFGGDKAA------------VSRIEGELCL-HLVHC--DFSCTSEIQRAIPILK 94 (271)
Q Consensus 31 spllsi~l-v~vgailli~Y~ysgsg~~~~~~~a------------vs~~eg~l~~-h~~h~--d~sct~eV~~AiP~Lk 94 (271)
.|.-.++- +.-|+-+.+-+++...|..+..++- ++..+ +|.. +.++. +..++.....+.|+++
T Consensus 12 G~~a~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~a~~~~~-~l~~~~~v~~vvg~~~s~~~~~~~~~~~ 90 (343)
T PF13458_consen 12 GPFAPYGQDFLRGAELAVDEINAAGGINGRKIELVVYDDGGDPAQAVQAAR-KLIDDDGVDAVVGPLSSAQAEAVAPIAE 90 (343)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TT-HHHHHHHHH-HHHHTSTESEEEESSSHHHHHHHHHHHH
T ss_pred ChhhhhhHHHHHHHHHHHHHHHHhCCcCCccceeeeccCCCChHHHHHHHH-HhhhhcCcEEEEecCCcHHHHHHHHHHH
Confidence 44444543 4567777777777764443433331 11111 2222 33331 3456777777788887
Q ss_pred HH-----------hcccccceeeecCCchhHhHhhhc----cccccccccc----cccccchhHHHHHHHhhceeeeeee
Q 024173 95 KA-----------YGDSMHKVLHVGPDTCSVVSTLLK----EEETEAWGVE----PYDIEDADARCKSLVHKGIVRVADI 155 (271)
Q Consensus 95 ka-----------YGdsM~kVLHVGPdtC~VVs~LLk----Ee~tEAWGVE----Pydied~d~~CKsLvrKGiVRvADI 155 (271)
+. -...-..++++.|+.......+++ +...+-.++= +|.-+-++.-=+.+-+.|+-.|+.+
T Consensus 91 ~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~ 170 (343)
T PF13458_consen 91 EAGIPYISPSASSPSPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEI 170 (343)
T ss_dssp HHT-EEEESSGGGGTTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hcCcEEEEeeccCCCCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccce
Confidence 72 123456789999988665555443 2232333332 1111112222334455666655666
Q ss_pred cCCCCCCCCCccEEEecccccccChhhhcccccchhhcccCceEEEecCCCchhhhHHhhhhcCCccc---cccchhHHH
Q 024173 156 KFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAK---MRSSSWWIR 232 (271)
Q Consensus 156 kfpLPYR~kSFslVivSDaLDyLspryLNkTLPeLaRvsadglViF~G~PgqqrakvaelskfgrpaK---~rsssWW~r 232 (271)
.++..- .-+...+..|.+-..|. |++.+.|+.--.-+.++.+.|-..+ +-+.+.|..
T Consensus 171 ~~~~~~-------------------~d~~~~~~~l~~~~~d~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (343)
T PF13458_consen 171 RYPPGD-------------------TDFSALVQQLKSAGPDV-VVLAGDPADAAAFLRQLRQLGLKPPRIPLFGTSLDDA 230 (343)
T ss_dssp EE-TTS-------------------SHHHHHHHHHHHTTTSE-EEEESTHHHHHHHHHHHHHTTGCSCTEEEEEGGGSSH
T ss_pred eccccc-------------------ccchHHHHHHhhcCCCE-EEEeccchhHHHHHHHHHhhccccccceeeccccCcH
Confidence 665221 22233455566666776 7777788877777888888887754 223334444
Q ss_pred HHHHhc
Q 024173 233 YFVQTS 238 (271)
Q Consensus 233 ~F~qt~ 238 (271)
.+.+.+
T Consensus 231 ~l~~~~ 236 (343)
T PF13458_consen 231 SLQQLG 236 (343)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 444443
No 146
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=20.43 E-value=72 Score=25.77 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=34.4
Q ss_pred hccCCCccCCccchhhhhcccccccccccCccchHHHHhHhHHHHHHhcccccceeeecC
Q 024173 50 AFSGSGIFGGDKAAVSRIEGELCLHLVHCDFSCTSEIQRAIPILKKAYGDSMHKVLHVGP 109 (271)
Q Consensus 50 ~ysgsg~~~~~~~avs~~eg~l~~h~~h~d~sct~eV~~AiP~LkkaYGdsM~kVLHVGP 109 (271)
=|+||++|+.+-.. ...+ +-+......+..||..|++.+.-.-.+|.-+|=
T Consensus 21 ~~rGs~g~g~~~~~--~~~~-------~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~ 71 (213)
T PF00326_consen 21 NYRGSGGYGKDFHE--AGRG-------DWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGH 71 (213)
T ss_dssp E-TTSSSSHHHHHH--TTTT-------GTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cCCCCCccchhHHH--hhhc-------cccccchhhHHHHHHHHhccccccceeEEEEcc
Confidence 47899888753322 1122 113457788999999999999777788887773
No 147
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=20.36 E-value=3.3e+02 Score=24.03 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=50.2
Q ss_pred ccEEEecccccccC--hhhhccccc-chhhcccCceEEEe--cCCCchhhhHHhhhhcCCcccccc---------chhHH
Q 024173 166 FPLVIVSDALDYLS--PKYLNKTLP-DLARVASDGVLIFA--GYPGQQRAKVAELSKFGRPAKMRS---------SSWWI 231 (271)
Q Consensus 166 FslVivSDaLDyLs--pryLNkTLP-eLaRvsadglViF~--G~PgqqrakvaelskfgrpaK~rs---------ssWW~ 231 (271)
..+|||-|+ ++++ ++-+.+.|- -|.+...+.++||+ +-|...+.....+.|+|....... ..|=.
T Consensus 62 ~rlVvv~~~-~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~ 140 (326)
T PRK07452 62 GRLVWLKNS-PLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVE 140 (326)
T ss_pred ceEEEEeCc-hhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHH
Confidence 457888876 3331 222222333 34556778888885 334333344556777776333221 34556
Q ss_pred HHHHHhccccchHHHHHHHHHH
Q 024173 232 RYFVQTSLEENEPAVKKFEQAA 253 (271)
Q Consensus 232 r~F~qt~LeEnE~a~KkFeqa~ 253 (271)
..|.+.|+.=+++|...+-+..
T Consensus 141 ~~~~~~g~~i~~~a~~~L~~~~ 162 (326)
T PRK07452 141 RTAQELGVKLTPEAAELLAEAV 162 (326)
T ss_pred HHHHHcCCCCCHHHHHHHHHHh
Confidence 6777788888888877765543
No 148
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=20.32 E-value=22 Score=25.62 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=23.2
Q ss_pred hcccccchhhcccCceEEEecCCCchhhh
Q 024173 183 LNKTLPDLARVASDGVLIFAGYPGQQRAK 211 (271)
Q Consensus 183 LNkTLPeLaRvsadglViF~G~Pgqqrak 211 (271)
|++...+-+.+..+|..+|.|.+|++.-+
T Consensus 37 l~~~~~~~v~l~v~g~~~~~g~lg~~~~~ 65 (77)
T PF01052_consen 37 LDKPADEPVELRVNGQPIFRGELGRVNGR 65 (77)
T ss_dssp ECCESSTEEEEEETTEEEEEEEEEEETTE
T ss_pred eCCCCCCCEEEEECCEEEEEEEEEEECCE
Confidence 44555588889999999999999987543
No 149
>PRK04011 peptide chain release factor 1; Provisional
Probab=20.31 E-value=38 Score=32.62 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=29.2
Q ss_pred cccCceEEEecC-----CCchhhhHHhhhhcCCccccccchhHHHHHHH
Q 024173 193 VASDGVLIFAGY-----PGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQ 236 (271)
Q Consensus 193 vsadglViF~G~-----PgqqrakvaelskfgrpaK~rsssWW~r~F~q 236 (271)
+-..|+|||+|. ||+.+----++. -++|+..---.||.+|++.
T Consensus 83 ~p~nGl~~f~g~~~~~~~~~~~~~t~~i~-p~~~i~~~~y~~d~~f~le 130 (411)
T PRK04011 83 PPENGLVIFCGAVPIGGPGTEDMETYVIE-PPEPVPTFFYRCDSEFHTE 130 (411)
T ss_pred CCCCeEEEEEeecccCCCCCceEEEEEEc-CCCccEEEEecCCcHHHHH
Confidence 345899999996 466533334444 5677766556699998864
Done!