Query 024174
Match_columns 271
No_of_seqs 33 out of 35
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 02:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02552 LcrH_SycD type III s 98.3 9E-06 1.9E-10 63.5 10.7 100 156-261 16-117 (135)
2 cd00189 TPR Tetratricopeptide 98.3 9.4E-06 2E-10 54.4 8.4 95 160-260 3-99 (100)
3 PF09976 TPR_21: Tetratricopep 97.9 3.1E-05 6.7E-10 63.1 7.2 92 159-254 50-143 (145)
4 PRK15359 type III secretion sy 97.9 9.6E-05 2.1E-09 61.0 10.0 95 160-260 27-123 (144)
5 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00022 4.7E-09 53.4 10.2 100 159-261 4-108 (119)
6 PF13432 TPR_16: Tetratricopep 97.8 3.2E-05 6.8E-10 54.4 4.6 60 199-260 1-62 (65)
7 PF13371 TPR_9: Tetratricopept 97.8 5.3E-05 1.2E-09 54.0 5.0 58 201-260 1-60 (73)
8 PLN03088 SGT1, suppressor of 97.7 0.00016 3.4E-09 68.3 9.3 97 159-261 4-102 (356)
9 PRK10370 formate-dependent nit 97.7 0.00038 8.2E-09 60.8 10.7 102 155-262 71-177 (198)
10 TIGR02521 type_IV_pilW type IV 97.7 0.00053 1.1E-08 55.0 9.8 98 159-260 101-200 (234)
11 TIGR02521 type_IV_pilW type IV 97.6 0.00048 1E-08 55.3 9.0 100 157-260 65-166 (234)
12 PF13414 TPR_11: TPR repeat; P 97.5 0.0002 4.2E-09 50.7 4.5 62 197-260 5-69 (69)
13 PRK15331 chaperone protein Sic 97.4 0.0015 3.2E-08 57.5 10.3 101 150-257 30-133 (165)
14 PRK15363 pathogenicity island 97.4 0.0018 3.8E-08 56.6 10.5 101 154-260 32-134 (157)
15 PF14938 SNAP: Soluble NSF att 97.4 0.00061 1.3E-08 61.8 7.4 109 158-268 115-233 (282)
16 PF14559 TPR_19: Tetratricopep 97.3 0.00026 5.6E-09 49.8 3.8 57 167-229 1-58 (68)
17 PRK02603 photosystem I assembl 97.3 0.0024 5.1E-08 53.4 10.0 105 153-260 31-151 (172)
18 TIGR02917 PEP_TPR_lipo putativ 97.2 0.0028 6E-08 61.0 10.7 99 156-260 124-224 (899)
19 PRK10803 tol-pal system protei 97.2 0.0026 5.6E-08 58.6 10.1 98 159-261 144-249 (263)
20 TIGR03302 OM_YfiO outer membra 97.2 0.0032 6.9E-08 53.9 9.9 103 156-261 32-147 (235)
21 PRK11788 tetratricopeptide rep 97.1 0.0028 6E-08 57.6 9.1 102 157-260 141-245 (389)
22 TIGR02917 PEP_TPR_lipo putativ 97.1 0.0028 6E-08 61.0 9.4 98 157-260 159-258 (899)
23 PRK12370 invasion protein regu 97.1 0.0032 7E-08 62.4 10.1 94 160-259 341-436 (553)
24 PRK10049 pgaA outer membrane p 97.1 0.0057 1.2E-07 63.0 11.6 106 150-261 352-459 (765)
25 TIGR00990 3a0801s09 mitochondr 97.0 0.0042 9.2E-08 61.7 10.3 95 160-260 334-430 (615)
26 PRK11788 tetratricopeptide rep 97.0 0.0028 6E-08 57.6 8.1 94 161-260 111-211 (389)
27 PF12895 Apc3: Anaphase-promot 97.0 0.0011 2.4E-08 49.2 4.4 81 170-255 2-84 (84)
28 TIGR00990 3a0801s09 mitochondr 96.9 0.0052 1.1E-07 61.0 9.9 96 159-260 367-464 (615)
29 PRK15174 Vi polysaccharide exp 96.9 0.0043 9.3E-08 63.1 9.4 99 156-260 283-383 (656)
30 PF13432 TPR_16: Tetratricopep 96.9 0.0024 5.2E-08 44.8 5.4 62 162-229 2-64 (65)
31 PRK12370 invasion protein regu 96.9 0.0054 1.2E-07 60.8 9.7 98 158-260 373-472 (553)
32 PF13429 TPR_15: Tetratricopep 96.9 0.0058 1.3E-07 54.2 8.8 99 156-260 145-245 (280)
33 PRK11189 lipoprotein NlpI; Pro 96.9 0.0077 1.7E-07 55.0 9.6 97 159-261 66-164 (296)
34 cd00189 TPR Tetratricopeptide 96.8 0.0041 8.8E-08 41.5 5.6 62 198-261 3-66 (100)
35 PRK11447 cellulose synthase su 96.7 0.0087 1.9E-07 64.3 9.8 103 156-260 302-416 (1157)
36 PF14559 TPR_19: Tetratricopep 96.6 0.0014 3E-08 46.0 2.4 54 205-260 1-56 (68)
37 PRK15359 type III secretion sy 96.6 0.0031 6.7E-08 52.0 4.6 75 181-261 13-90 (144)
38 CHL00033 ycf3 photosystem I as 96.6 0.027 5.9E-07 46.6 10.0 106 152-260 30-151 (168)
39 PF03704 BTAD: Bacterial trans 96.5 0.02 4.3E-07 46.2 8.8 103 156-260 5-127 (146)
40 TIGR03302 OM_YfiO outer membra 96.5 0.024 5.3E-07 48.5 9.8 99 159-260 72-197 (235)
41 TIGR00540 hemY_coli hemY prote 96.5 0.018 4E-07 54.7 9.8 94 160-258 121-216 (409)
42 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.011 2.5E-07 44.1 6.4 67 196-264 3-74 (119)
43 PF13525 YfiO: Outer membrane 96.4 0.042 9.2E-07 47.7 10.8 105 156-263 4-124 (203)
44 cd05804 StaR_like StaR_like; a 96.4 0.036 7.8E-07 49.9 10.6 99 156-258 113-215 (355)
45 PRK10747 putative protoheme IX 96.4 0.019 4E-07 54.7 9.2 96 156-260 262-359 (398)
46 PRK11447 cellulose synthase su 96.2 0.019 4E-07 61.9 9.0 103 156-260 384-526 (1157)
47 PF09295 ChAPs: ChAPs (Chs5p-A 96.2 0.013 2.9E-07 57.3 7.0 84 163-252 206-291 (395)
48 PRK15179 Vi polysaccharide bio 96.1 0.027 5.7E-07 58.8 9.3 96 156-257 85-182 (694)
49 PRK09782 bacteriophage N4 rece 96.1 0.028 6.1E-07 60.7 9.6 95 157-261 44-140 (987)
50 TIGR02552 LcrH_SycD type III s 96.1 0.013 2.8E-07 45.7 5.4 68 190-260 13-82 (135)
51 PRK10049 pgaA outer membrane p 95.9 0.058 1.3E-06 55.8 10.2 95 159-260 51-147 (765)
52 PRK11189 lipoprotein NlpI; Pro 95.8 0.017 3.8E-07 52.8 5.6 90 169-260 38-129 (296)
53 PRK10866 outer membrane biogen 95.7 0.084 1.8E-06 47.8 9.4 102 159-263 34-158 (243)
54 PF13429 TPR_15: Tetratricopep 95.6 0.024 5.2E-07 50.3 5.6 92 157-254 180-273 (280)
55 PRK15174 Vi polysaccharide exp 95.6 0.073 1.6E-06 54.3 9.7 89 166-260 221-315 (656)
56 cd05804 StaR_like StaR_like; a 95.5 0.076 1.7E-06 47.8 8.3 85 170-260 93-179 (355)
57 PRK09782 bacteriophage N4 rece 95.3 0.09 2E-06 56.9 9.7 97 158-260 610-708 (987)
58 PF13414 TPR_11: TPR repeat; P 95.3 0.032 6.9E-07 39.3 4.3 59 157-219 3-63 (69)
59 PRK14574 hmsH outer membrane p 95.3 0.14 2.9E-06 54.6 10.8 97 157-260 102-200 (822)
60 PRK14574 hmsH outer membrane p 95.2 0.082 1.8E-06 56.2 8.7 94 160-260 71-167 (822)
61 PRK15179 Vi polysaccharide bio 95.2 0.11 2.4E-06 54.2 9.5 100 155-260 118-219 (694)
62 PF13424 TPR_12: Tetratricopep 94.9 0.16 3.5E-06 36.6 7.2 60 157-216 5-67 (78)
63 PRK10747 putative protoheme IX 94.9 0.15 3.2E-06 48.6 9.0 90 163-257 123-215 (398)
64 KOG1173 Anaphase-promoting com 94.8 0.092 2E-06 54.2 7.5 101 159-261 416-521 (611)
65 PF09976 TPR_21: Tetratricopep 94.2 0.42 9E-06 38.9 8.8 98 160-266 14-118 (145)
66 KOG2376 Signal recognition par 94.0 0.18 4E-06 52.4 7.8 106 148-256 167-310 (652)
67 PF13371 TPR_9: Tetratricopept 94.0 0.15 3.3E-06 36.0 5.3 64 166-235 4-68 (73)
68 PF14938 SNAP: Soluble NSF att 94.0 0.12 2.6E-06 47.0 5.7 99 160-259 78-185 (282)
69 PF12688 TPR_5: Tetratrico pep 93.8 0.36 7.9E-06 39.9 7.7 89 162-253 6-99 (120)
70 KOG4555 TPR repeat-containing 93.8 0.38 8.3E-06 42.5 8.2 104 149-258 35-144 (175)
71 PF13424 TPR_12: Tetratricopep 93.1 0.071 1.5E-06 38.5 2.3 61 198-258 8-75 (78)
72 PF12895 Apc3: Anaphase-promot 92.8 0.15 3.3E-06 37.6 3.7 53 159-216 27-79 (84)
73 PRK10370 formate-dependent nit 92.8 0.44 9.4E-06 41.7 7.1 84 172-261 54-142 (198)
74 TIGR00540 hemY_coli hemY prote 92.7 0.36 7.7E-06 46.0 7.0 99 157-258 263-399 (409)
75 PF13512 TPR_18: Tetratricopep 92.7 2.2 4.8E-05 36.9 11.1 99 159-260 12-127 (142)
76 KOG1126 DNA-binding cell divis 92.6 0.27 5.9E-06 51.3 6.4 105 155-265 487-593 (638)
77 PLN03088 SGT1, suppressor of 92.6 0.37 7.9E-06 45.8 6.9 83 157-245 36-119 (356)
78 PF09295 ChAPs: ChAPs (Chs5p-A 91.9 0.7 1.5E-05 45.5 8.1 97 160-266 172-270 (395)
79 COG4783 Putative Zn-dependent 91.7 1.9 4E-05 44.0 10.9 82 163-250 346-429 (484)
80 KOG1840 Kinesin light chain [C 91.7 1.1 2.5E-05 45.6 9.5 103 155-259 322-439 (508)
81 PLN03098 LPA1 LOW PSII ACCUMUL 91.6 0.32 7E-06 49.0 5.5 63 156-221 74-139 (453)
82 PF10300 DUF3808: Protein of u 91.4 0.45 9.8E-06 47.1 6.2 97 161-260 271-378 (468)
83 PF12569 NARP1: NMDA receptor- 91.2 0.29 6.2E-06 49.7 4.7 93 160-260 7-108 (517)
84 COG2976 Uncharacterized protei 91.1 0.43 9.4E-06 43.7 5.3 95 159-258 91-188 (207)
85 KOG4234 TPR repeat-containing 91.0 1.3 2.9E-05 41.6 8.5 104 155-260 93-199 (271)
86 KOG2076 RNA polymerase III tra 90.6 1.3 2.7E-05 48.1 8.9 87 155-248 412-502 (895)
87 PF04733 Coatomer_E: Coatomer 90.1 0.53 1.2E-05 43.9 5.1 94 158-260 67-162 (290)
88 KOG1840 Kinesin light chain [C 90.0 0.75 1.6E-05 46.8 6.5 95 160-254 244-350 (508)
89 PF12569 NARP1: NMDA receptor- 87.5 2.5 5.4E-05 43.0 8.2 66 197-264 196-263 (517)
90 PF10602 RPN7: 26S proteasome 87.5 2.5 5.4E-05 36.8 7.2 93 158-252 37-136 (177)
91 PF13181 TPR_8: Tetratricopept 87.0 0.73 1.6E-05 28.3 2.7 30 231-260 2-32 (34)
92 PRK10803 tol-pal system protei 86.9 1.3 2.8E-05 41.0 5.4 54 206-261 154-212 (263)
93 KOG0553 TPR repeat-containing 86.7 3.2 6.9E-05 40.2 8.0 100 154-260 78-180 (304)
94 COG1729 Uncharacterized protei 86.5 7.4 0.00016 36.8 10.2 101 159-262 143-248 (262)
95 TIGR03362 VI_chp_7 type VI sec 86.5 1.2 2.6E-05 42.3 5.1 68 155-223 211-279 (301)
96 PF12862 Apc5: Anaphase-promot 86.3 1.7 3.7E-05 33.6 5.0 53 169-221 10-68 (94)
97 PLN03081 pentatricopeptide (PP 86.2 4.5 9.8E-05 41.1 9.3 92 161-257 430-556 (697)
98 COG4235 Cytochrome c biogenesi 86.1 6.2 0.00013 37.8 9.6 101 156-262 155-260 (287)
99 PF13428 TPR_14: Tetratricopep 85.6 0.71 1.5E-05 30.8 2.2 33 197-231 3-36 (44)
100 PF13174 TPR_6: Tetratricopept 85.2 2 4.4E-05 25.8 4.0 28 233-260 3-31 (33)
101 PF12688 TPR_5: Tetratrico pep 85.2 5 0.00011 33.2 7.5 60 156-216 37-96 (120)
102 KOG1126 DNA-binding cell divis 85.0 2 4.4E-05 45.1 6.2 100 156-261 522-623 (638)
103 PF07719 TPR_2: Tetratricopept 84.8 1 2.3E-05 27.3 2.6 27 234-260 5-32 (34)
104 CHL00033 ycf3 photosystem I as 84.3 2.4 5.1E-05 35.1 5.3 68 193-260 33-103 (168)
105 PLN03218 maturation of RBCL 1; 83.4 8.9 0.00019 42.4 10.5 55 199-256 688-746 (1060)
106 KOG0548 Molecular co-chaperone 83.4 2 4.4E-05 44.2 5.3 89 164-260 365-457 (539)
107 PLN03218 maturation of RBCL 1; 83.2 9.6 0.00021 42.1 10.7 62 162-224 547-609 (1060)
108 PF04733 Coatomer_E: Coatomer 83.2 3.9 8.5E-05 38.2 6.8 96 159-260 168-267 (290)
109 PRK02603 photosystem I assembl 83.2 3.5 7.5E-05 34.4 5.9 64 197-260 37-103 (172)
110 PF13176 TPR_7: Tetratricopept 83.1 0.5 1.1E-05 30.6 0.6 16 201-216 5-20 (36)
111 COG5010 TadD Flp pilus assembl 82.5 11 0.00023 35.8 9.3 93 161-261 70-166 (257)
112 PF03704 BTAD: Bacterial trans 82.4 5.2 0.00011 32.1 6.4 59 157-219 62-121 (146)
113 PF09613 HrpB1_HrpK: Bacterial 82.0 11 0.00024 33.3 8.8 78 153-239 6-84 (160)
114 KOG2076 RNA polymerase III tra 81.7 5.7 0.00012 43.2 8.1 107 148-260 367-480 (895)
115 PLN03077 Protein ECB2; Provisi 81.6 9.1 0.0002 39.9 9.4 94 160-260 357-486 (857)
116 PF13374 TPR_10: Tetratricopep 81.6 3.9 8.4E-05 25.5 4.4 31 159-189 4-34 (42)
117 PF07719 TPR_2: Tetratricopept 81.2 3.8 8.2E-05 24.8 4.1 27 198-224 4-31 (34)
118 COG0457 NrfG FOG: TPR repeat [ 80.7 20 0.00044 26.4 9.9 95 159-257 61-158 (291)
119 PRK04841 transcriptional regul 80.2 6.9 0.00015 40.3 7.9 102 159-260 493-604 (903)
120 KOG4626 O-linked N-acetylgluco 80.1 4.7 0.0001 43.2 6.7 100 159-260 322-453 (966)
121 KOG3785 Uncharacterized conser 79.1 7.1 0.00015 39.6 7.3 82 167-253 32-115 (557)
122 PRK14720 transcript cleavage f 78.5 6.1 0.00013 43.2 7.2 87 158-267 117-206 (906)
123 KOG1129 TPR repeat-containing 78.5 59 0.0013 32.9 13.3 89 163-258 229-319 (478)
124 COG0457 NrfG FOG: TPR repeat [ 78.2 25 0.00053 25.9 8.9 89 167-260 177-267 (291)
125 PRK14720 transcript cleavage f 77.9 17 0.00037 39.9 10.2 99 155-260 29-147 (906)
126 KOG1173 Anaphase-promoting com 77.7 13 0.00029 39.0 9.0 97 154-258 241-341 (611)
127 PRK10866 outer membrane biogen 77.7 4.1 9E-05 36.9 4.9 59 201-261 38-101 (243)
128 PLN03098 LPA1 LOW PSII ACCUMUL 77.4 11 0.00024 38.3 8.1 56 202-259 82-142 (453)
129 PF13174 TPR_6: Tetratricopept 77.3 2.5 5.3E-05 25.4 2.3 27 198-224 3-30 (33)
130 PF09986 DUF2225: Uncharacteri 77.0 6.7 0.00014 35.3 6.0 63 161-223 122-194 (214)
131 PLN03081 pentatricopeptide (PP 76.0 17 0.00036 37.1 9.2 85 162-256 365-453 (697)
132 PRK04841 transcriptional regul 75.6 20 0.00043 37.1 9.6 105 156-260 530-643 (903)
133 PF00515 TPR_1: Tetratricopept 75.2 3.4 7.3E-05 25.4 2.6 29 232-260 3-32 (34)
134 KOG0548 Molecular co-chaperone 74.6 13 0.00027 38.7 7.8 57 202-260 365-423 (539)
135 PRK10153 DNA-binding transcrip 73.8 27 0.00058 35.5 9.9 62 196-260 421-484 (517)
136 PRK10153 DNA-binding transcrip 73.3 8.9 0.00019 38.9 6.4 67 164-237 427-494 (517)
137 PF15015 NYD-SP12_N: Spermatog 73.2 24 0.00053 36.4 9.3 101 156-258 171-291 (569)
138 COG3063 PilF Tfp pilus assembl 72.5 31 0.00068 32.7 9.3 91 159-256 37-130 (250)
139 PF00515 TPR_1: Tetratricopept 72.5 2.8 6E-05 25.8 1.7 21 199-219 5-26 (34)
140 PRK15363 pathogenicity island 71.9 6.8 0.00015 34.4 4.5 58 201-260 41-100 (157)
141 COG4455 ImpE Protein of avirul 68.6 13 0.00027 35.5 5.8 55 160-218 4-59 (273)
142 PF14561 TPR_20: Tetratricopep 68.3 21 0.00047 27.9 6.3 44 177-224 8-52 (90)
143 PLN03077 Protein ECB2; Provisi 68.1 30 0.00065 36.2 9.0 88 166-257 598-719 (857)
144 TIGR02561 HrpB1_HrpK type III 66.6 42 0.0009 29.7 8.3 78 154-240 7-85 (153)
145 PF13525 YfiO: Outer membrane 66.2 13 0.00029 32.2 5.2 61 200-262 10-75 (203)
146 KOG2376 Signal recognition par 66.0 6.4 0.00014 41.4 3.6 70 155-224 44-140 (652)
147 PF13176 TPR_7: Tetratricopept 65.2 18 0.00038 23.2 4.4 30 160-189 2-31 (36)
148 COG4235 Cytochrome c biogenesi 65.2 42 0.00091 32.3 8.7 81 160-245 193-277 (287)
149 PF10602 RPN7: 26S proteasome 65.0 19 0.00042 31.3 5.9 87 173-260 12-104 (177)
150 PF10579 Rapsyn_N: Rapsyn N-te 65.0 23 0.0005 28.3 5.8 57 159-218 8-66 (80)
151 PF13041 PPR_2: PPR repeat fam 65.0 13 0.00028 25.0 3.9 40 200-242 8-48 (50)
152 PF04184 ST7: ST7 protein; In 64.9 21 0.00047 37.0 7.1 58 156-216 258-316 (539)
153 COG4783 Putative Zn-dependent 64.7 49 0.0011 34.1 9.5 94 161-260 310-405 (484)
154 COG3071 HemY Uncharacterized e 64.3 67 0.0014 32.5 10.1 93 159-256 265-388 (400)
155 PLN02789 farnesyltranstransfer 64.2 58 0.0013 31.0 9.5 16 170-185 50-65 (320)
156 PF14561 TPR_20: Tetratricopep 63.8 17 0.00037 28.5 4.9 55 155-211 20-74 (90)
157 smart00028 TPR Tetratricopepti 61.8 16 0.00035 19.4 3.4 26 233-258 4-30 (34)
158 PF13431 TPR_17: Tetratricopep 61.6 3.7 8.1E-05 26.5 0.7 23 227-249 10-33 (34)
159 KOG2066 Vacuolar assembly/sort 61.0 27 0.00058 38.0 7.2 93 162-261 361-482 (846)
160 PF07721 TPR_4: Tetratricopept 60.9 10 0.00022 23.0 2.5 20 197-216 3-22 (26)
161 COG5010 TadD Flp pilus assembl 60.6 40 0.00086 32.1 7.5 90 160-255 103-194 (257)
162 KOG3060 Uncharacterized conser 60.4 1.1E+02 0.0023 29.8 10.4 100 155-260 50-151 (289)
163 COG4105 ComL DNA uptake lipopr 59.9 84 0.0018 29.8 9.5 101 157-260 34-144 (254)
164 KOG0376 Serine-threonine phosp 57.5 22 0.00047 36.5 5.6 96 159-261 6-104 (476)
165 PF11817 Foie-gras_1: Foie gra 57.4 15 0.00033 33.2 4.1 67 173-245 154-223 (247)
166 KOG3653 Transforming growth fa 57.3 9.8 0.00021 39.3 3.1 111 77-195 352-490 (534)
167 COG2956 Predicted N-acetylgluc 55.0 22 0.00047 35.5 4.9 91 161-260 184-280 (389)
168 COG3063 PilF Tfp pilus assembl 53.6 25 0.00054 33.4 4.9 69 191-261 31-101 (250)
169 TIGR00756 PPR pentatricopeptid 53.4 17 0.00038 21.3 2.7 25 201-225 6-31 (35)
170 KOG4340 Uncharacterized conser 53.2 9.8 0.00021 37.9 2.3 74 146-223 133-207 (459)
171 PRK15331 chaperone protein Sic 52.1 28 0.0006 31.0 4.8 60 205-267 47-108 (165)
172 KOG0543 FKBP-type peptidyl-pro 49.6 1.1E+02 0.0024 30.9 8.9 101 158-260 209-322 (397)
173 KOG2062 26S proteasome regulat 49.4 43 0.00093 36.7 6.4 76 174-253 40-118 (929)
174 KOG2908 26S proteasome regulat 49.1 61 0.0013 32.5 7.0 64 159-222 77-143 (380)
175 PF11207 DUF2989: Protein of u 48.9 63 0.0014 29.7 6.6 79 117-215 120-198 (203)
176 PLN02789 farnesyltranstransfer 48.2 1E+02 0.0022 29.4 8.2 31 209-241 156-187 (320)
177 KOG1156 N-terminal acetyltrans 47.8 24 0.00052 37.7 4.3 108 158-269 144-258 (700)
178 KOG0550 Molecular chaperone (D 46.9 46 0.001 34.2 5.9 95 161-260 253-352 (486)
179 PF01535 PPR: PPR repeat; Int 46.9 17 0.00037 21.2 1.9 24 200-223 5-29 (31)
180 PF13428 TPR_14: Tetratricopep 46.2 35 0.00076 22.5 3.5 29 159-187 3-31 (44)
181 KOG2003 TPR repeat-containing 45.6 14 0.00031 38.5 2.3 83 169-261 502-590 (840)
182 PF12862 Apc5: Anaphase-promot 45.3 45 0.00098 25.6 4.5 48 157-204 41-90 (94)
183 PF10516 SHNi-TPR: SHNi-TPR; 45.3 25 0.00053 24.0 2.7 25 196-220 2-28 (38)
184 PF11846 DUF3366: Domain of un 44.9 16 0.00035 31.2 2.2 28 237-264 151-179 (193)
185 PRK10941 hypothetical protein; 44.2 50 0.0011 31.0 5.4 58 202-261 188-247 (269)
186 PF10607 CLTH: CTLH/CRA C-term 43.9 91 0.002 25.2 6.3 52 167-218 11-63 (145)
187 KOG2053 Mitochondrial inherita 41.2 90 0.002 34.6 7.4 87 169-261 21-109 (932)
188 PF04190 DUF410: Protein of un 39.8 2E+02 0.0044 26.5 8.6 104 153-258 48-170 (260)
189 KOG1585 Protein required for f 38.8 53 0.0012 31.9 4.7 86 169-254 122-215 (308)
190 PF05843 Suf: Suppressor of fo 37.5 2.9E+02 0.0063 25.4 9.2 96 160-261 39-139 (280)
191 PF09477 Type_III_YscG: Bacter 36.4 98 0.0021 26.4 5.4 24 193-216 38-61 (116)
192 KOG2280 Vacuolar assembly/sort 36.2 83 0.0018 34.4 6.1 103 159-268 640-751 (829)
193 COG3118 Thioredoxin domain-con 36.1 1.3E+02 0.0028 29.4 6.9 59 158-220 135-194 (304)
194 KOG1174 Anaphase-promoting com 35.9 1E+02 0.0022 32.1 6.4 69 156-231 437-506 (564)
195 PF07035 Mic1: Colon cancer-as 35.2 81 0.0018 27.9 5.0 20 200-219 94-113 (167)
196 PF09986 DUF2225: Uncharacteri 34.5 1E+02 0.0022 27.8 5.7 30 228-257 163-193 (214)
197 KOG1585 Protein required for f 34.3 1.4E+02 0.003 29.2 6.7 97 160-259 74-180 (308)
198 PF09577 Spore_YpjB: Sporulati 34.1 2.5E+02 0.0055 26.2 8.3 104 155-260 3-134 (232)
199 KOG1155 Anaphase-promoting com 33.9 86 0.0019 32.8 5.6 59 199-259 436-496 (559)
200 PF11817 Foie-gras_1: Foie gra 33.6 1.1E+02 0.0023 27.7 5.7 61 161-221 182-245 (247)
201 KOG3364 Membrane protein invol 33.5 85 0.0018 27.8 4.8 70 152-223 30-100 (149)
202 PF04184 ST7: ST7 protein; In 32.6 1.8E+02 0.0038 30.6 7.6 82 171-258 214-324 (539)
203 PF06570 DUF1129: Protein of u 32.6 1.9E+02 0.0042 25.5 7.0 69 160-242 10-86 (206)
204 PF06552 TOM20_plant: Plant sp 32.4 1.4E+02 0.0031 27.2 6.2 66 162-229 33-113 (186)
205 PRK10941 hypothetical protein; 32.3 2.2E+02 0.0048 26.8 7.7 92 146-243 170-262 (269)
206 KOG0545 Aryl-hydrocarbon recep 32.2 3.1E+02 0.0068 26.9 8.7 102 157-260 178-295 (329)
207 KOG2041 WD40 repeat protein [G 32.1 1.4E+02 0.003 33.1 7.0 79 165-251 985-1072(1189)
208 KOG2002 TPR-containing nuclear 31.9 2.7E+02 0.0059 31.4 9.2 57 201-260 313-373 (1018)
209 KOG4234 TPR repeat-containing 31.3 1.3E+02 0.0027 28.8 5.8 83 148-239 125-209 (271)
210 KOG2002 TPR-containing nuclear 31.2 1.3E+02 0.0027 33.8 6.6 100 157-262 646-749 (1018)
211 KOG3081 Vesicle coat complex C 30.6 4.5E+02 0.0097 25.8 9.5 58 156-216 71-129 (299)
212 TIGR02411 leuko_A4_hydro leuko 30.5 86 0.0019 32.5 5.1 51 207-259 538-589 (601)
213 TIGR02508 type_III_yscG type I 30.1 71 0.0015 27.2 3.6 23 194-216 38-60 (115)
214 PF13812 PPR_3: Pentatricopept 29.5 59 0.0013 19.3 2.4 22 202-223 8-30 (34)
215 smart00668 CTLH C-terminal to 29.4 1.1E+02 0.0025 20.7 4.1 43 203-245 9-53 (58)
216 KOG4626 O-linked N-acetylgluco 28.8 2.2E+02 0.0047 31.3 7.6 96 157-260 116-215 (966)
217 PF06552 TOM20_plant: Plant sp 28.3 91 0.002 28.4 4.3 64 189-254 20-98 (186)
218 KOG1130 Predicted G-alpha GTPa 28.2 71 0.0015 33.3 3.9 60 159-218 19-78 (639)
219 KOG0553 TPR repeat-containing 27.9 73 0.0016 31.1 3.8 51 198-250 77-136 (304)
220 PF08311 Mad3_BUB1_I: Mad3/BUB 27.7 2.8E+02 0.006 22.8 6.8 93 157-253 26-123 (126)
221 PF10300 DUF3808: Protein of u 26.6 2.1E+02 0.0045 28.7 6.8 82 172-258 248-334 (468)
222 PF14842 FliG_N: FliG N-termin 26.3 1.3E+02 0.0029 24.1 4.5 96 156-259 4-102 (108)
223 PF05843 Suf: Suppressor of fo 26.1 1.4E+02 0.003 27.4 5.2 82 177-260 17-101 (280)
224 KOG0687 26S proteasome regulat 26.0 1.6E+02 0.0034 29.7 5.7 49 174-222 81-132 (393)
225 KOG3081 Vesicle coat complex C 25.4 6.5E+02 0.014 24.7 9.6 82 164-248 159-260 (299)
226 PF04910 Tcf25: Transcriptiona 25.4 3.4E+02 0.0073 26.4 7.8 71 157-229 40-137 (360)
227 PF10345 Cohesin_load: Cohesin 25.1 3.1E+02 0.0066 28.1 7.8 100 153-252 295-427 (608)
228 COG4890 Predicted outer membra 25.0 38 0.00082 23.5 0.9 12 75-86 9-20 (37)
229 PF12854 PPR_1: PPR repeat 24.6 71 0.0015 20.4 2.2 16 201-216 13-28 (34)
230 PF06409 NPIP: Nuclear pore co 24.4 98 0.0021 29.6 3.8 67 171-238 117-194 (265)
231 PF02259 FAT: FAT domain; Int 24.3 2.9E+02 0.0063 24.7 6.8 69 154-222 143-212 (352)
232 KOG1156 N-terminal acetyltrans 24.1 1.7E+02 0.0038 31.5 5.9 95 160-259 76-173 (700)
233 COG2976 Uncharacterized protei 23.7 2.1E+02 0.0045 26.7 5.7 64 151-219 118-184 (207)
234 COG3118 Thioredoxin domain-con 23.5 4.1E+02 0.0088 26.1 7.9 32 193-224 234-266 (304)
235 PF02259 FAT: FAT domain; Int 23.5 2.7E+02 0.0059 24.9 6.5 56 160-215 187-265 (352)
236 KOG0547 Translocase of outer m 23.4 3.4E+02 0.0074 28.8 7.7 102 155-260 426-534 (606)
237 COG0049 RpsG Ribosomal protein 23.4 1.3E+02 0.0029 26.5 4.2 32 159-190 21-52 (148)
238 CHL00053 rps7 ribosomal protei 23.3 1.4E+02 0.003 25.8 4.4 31 159-189 22-52 (155)
239 PF10938 YfdX: YfdX protein; 23.2 1E+02 0.0022 26.6 3.5 62 155-216 73-138 (155)
240 KOG0495 HAT repeat protein [RN 23.2 2.8E+02 0.0061 30.6 7.2 92 160-260 789-882 (913)
241 KOG1125 TPR repeat-containing 23.1 2.9E+02 0.0062 29.4 7.2 98 155-260 351-461 (579)
242 COG4857 Predicted kinase [Gene 22.9 99 0.0021 30.9 3.7 55 193-257 260-319 (408)
243 PF05240 APOBEC_C: APOBEC-like 22.8 21 0.00044 26.6 -0.7 28 242-270 20-47 (55)
244 PF03032 Brevenin: Brevenin/es 22.8 53 0.0011 23.6 1.4 15 75-89 6-20 (46)
245 PF11833 DUF3353: Protein of u 22.1 4.8E+02 0.01 23.5 7.7 60 167-238 17-82 (194)
246 COG3629 DnrI DNA-binding trans 21.6 3.3E+02 0.0071 26.1 6.8 62 157-222 153-215 (280)
247 PF10255 Paf67: RNA polymerase 21.0 1.8E+02 0.0038 29.3 5.1 56 199-254 126-189 (404)
248 PF04348 LppC: LppC putative l 20.1 35 0.00075 34.9 0.0 94 156-251 23-120 (536)
249 TIGR01029 rpsG_bact ribosomal 20.1 1.7E+02 0.0038 25.2 4.3 31 160-190 21-51 (154)
No 1
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=9e-06 Score=63.55 Aligned_cols=100 Identities=21% Similarity=0.162 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+...+...+..+...|++++|.++++.+.+. +| ....+...+++.+..+|+|++|.. +++..+.+ |.+...++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~ 89 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYF 89 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHH
Confidence 4566888999999999999999999887753 23 234667788999999999999999 67777666 89999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
+.|++|..+++ ++|.++|++-.++.|.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 99999999999 9999999999999884
No 2
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.26 E-value=9.4e-06 Score=54.44 Aligned_cols=95 Identities=22% Similarity=0.198 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
+...+..+...|+.++|++.++.+++....+ ..+...++.+++.+|++++|.+ ++...+.. |.+...++..|.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHH
Confidence 3456667777899999999999888643222 2677889999999999999999 77777666 788888999999
Q ss_pred HHHhhCh-HHHHHHHHHHHhhcC
Q 024174 239 IYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+|...+. ++|.++|++-.++.|
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHccCC
Confidence 9999999 999999998877665
No 3
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=3.1e-05 Score=63.13 Aligned_cols=92 Identities=25% Similarity=0.259 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
..-.+|..+...|++++|.+.|+.+.+.. .++.-..-.++-|+.+++-+|+|++|++ .+...++ +-+......+|
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~G 125 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHH
Confidence 45567888889999999999999999755 3343345577889999999999999998 6554433 34556778899
Q ss_pred HHHHhhCh-HHHHHHHHH
Q 024174 238 IIYTMLNM-EEAKKWWEE 254 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~ 254 (271)
-||.-.|+ ++|.+.|++
T Consensus 126 di~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 99999999 999999975
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.93 E-value=9.6e-05 Score=60.99 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
.-..+..+...|++++|++.++.+.. .+|. -.++-+.++.++..+|+|++|+. |+....-+ |.|...++..|+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~ 100 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM---AQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHH
Confidence 44568889999999999999998773 3443 45677889999999999999999 88877666 999999999999
Q ss_pred HHHhhCh-HHHHHHHHHHHhhcC
Q 024174 239 IYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+|..+|+ +||.+.|++-.++.|
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999 999999999999988
No 5
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.00022 Score=53.39 Aligned_cols=100 Identities=19% Similarity=0.133 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---CCchh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---GRFPF 234 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~R~~L 234 (271)
.+-..+..+...|+.++|.+.++.+.+....+ ....+..+.++.++.-.|+|++|++ ++++.... |.+ ....+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHH
Confidence 45677888899999999999999888643221 2235678889999999999999999 77777654 442 34466
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
.-|.+|.-+++ ++|.+++++..+..|.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 67888888899 9999999999999884
No 6
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=3.2e-05 Score=54.44 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 199 MALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.++..++.+|+|++|.. ++++.+.+ |.+....+..|-||...++ ++|..+|++..++.|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 457888999999999999 78899888 9999999999999999999 999999999998888
No 7
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.75 E-value=5.3e-05 Score=53.97 Aligned_cols=58 Identities=29% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 201 LVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 201 lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.++++.+++|++|++ ++.+..-+ |.|...++.+|++|-.+++ ++|.+.|+++.+..|
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4689999999999999 77888777 9999999999999999999 999999999999988
No 8
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.00016 Score=68.32 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
.|...|..+...|++++|++.+++|++. +|.. ..+...++.+++.+|+|++|+. ++...+-+ |.+...|+-.|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg 77 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDL---DPNN-AELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 4777899999999999999999999963 3322 3456788899999999999999 77887777 89999999999
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
++|..+++ ++|.+++++-.++-|.
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999 9999999999998873
No 9
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.72 E-value=0.00038 Score=60.75 Aligned_cols=102 Identities=11% Similarity=0.035 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH-hcc--hHHHhh-hhhhcccCCCCCCC
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY-QGK--YREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~-qGk--~~EAL~-~~~L~~e~~~p~D~ 230 (271)
++.+....++..++..|+.++|++.+++|++.. | +.-++...+++++.+ .|+ +++|.+ +.+....+ |.|.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~ 144 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---G-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEV 144 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCCh
Confidence 356678888889999999999999999888533 3 345677888998865 477 599999 88888888 9999
Q ss_pred CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174 231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDE 262 (271)
Q Consensus 231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~ 262 (271)
+.+...|++|-.++. ++|.++|++-.++.|++
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999 99999999999999964
No 10
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.65 E-value=0.00053 Score=55.03 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
.....+..+...|+.++|.+.++++++.. +..........++.++..+|++++|.. +......+ |.+...++..|
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la 176 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELA 176 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHH
Confidence 34455666666777777777777776421 112223344556777788888888888 66666555 67777888888
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+|...++ ++|.++++++.++.+
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~~~ 200 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQTYN 200 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888 888888888887743
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.61 E-value=0.00048 Score=55.28 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.......+..+...|+.++|.+.++++++.... ...+...++.++..+|+|++|.+ ++...+....+.+.+.+..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 344555666777777777777777777754322 12355566777777788888877 5554443212444555666
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-|.+|..+++ ++|.+++++-.+..|
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6777777777 888888877776655
No 12
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.0002 Score=50.66 Aligned_cols=62 Identities=24% Similarity=0.257 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhC-h-HHHHHHHHHHHhhcC
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLN-M-EEAKKWWEEFAETID 260 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~-k-~EA~k~we~f~~lv~ 260 (271)
+-..++++++.+|+|++|++ |++..+-+ |.+...+...|++|..++ + ++|.+.|++-.++-|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34568899999999999999 77777667 899999999999999999 7 999999999888754
No 13
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.0015 Score=57.54 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=82.3
Q ss_pred CCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh-hhcccCCCC
Q 024174 150 PGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN-CLKDEQRIP 227 (271)
Q Consensus 150 ~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~-~L~~e~~~p 227 (271)
.+-|+++.+.|=..|-.+-.+|++++|..+-.-. |.-++.+.+++ |.|+-.+-.+|+|++|+. |. +.. -+ +
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L---~~~d~~n~~Y~-~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~--~ 102 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFL---CIYDFYNPDYT-MGLAAVCQLKKQFQKACDLYAVAFT-LL--K 102 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHhCcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-cc--c
Confidence 3456788999999999999999999998877633 23466555555 999999999999999999 66 322 12 5
Q ss_pred CCCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174 228 SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 228 ~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~ 257 (271)
.|.||++|=|+-|-+|++ ++|+++|+.=.+
T Consensus 103 ~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 899999999999999999 999999986444
No 14
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.40 E-value=0.0018 Score=56.57 Aligned_cols=101 Identities=15% Similarity=0.014 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
+|+.+.|=..|..|...|+.++|.+.-+-.. .-|+.... .=|-|+=++=.+|+|++|+. |+.-.--+ |.|.|+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~-y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~ 105 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFD-YWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchH
Confidence 5788999999999999999999998877443 33543222 22455556677899999999 77544334 899999
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+-|+.|-++++ ++|++.|+.=.+.+.
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999998777764
No 15
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.35 E-value=0.00061 Score=61.81 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCC----CCCC
Q 024174 158 NAIKAEAVKQMKY-GKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQR----IPSD 229 (271)
Q Consensus 158 ~~lk~~A~~L~kS-gk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~----~p~D 229 (271)
..+...|..+.+. |++++|++..++|.+.++.+. ..+.++..-++++++..|+|++|++ |+++....+ ..-.
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3477888888888 999999999999999998774 6777888899999999999999999 776554321 1113
Q ss_pred CCchhH-HHHHHHhhCh-HHHHHHHHHHHhhcCCCCCCCCC
Q 024174 230 GRFPFY-KAIIYTMLNM-EEAKKWWEEFAETIDDEEFDPTK 268 (271)
Q Consensus 230 ~R~~L~-k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~~~~ 268 (271)
.|-++. .+|+|-..+. -.|.+.|++|.+..| .|....
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~--~F~~s~ 233 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDP--SFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST--TSTTSH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCCcH
Confidence 455554 5555666666 999999999999987 566543
No 16
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00026 Score=49.77 Aligned_cols=57 Identities=28% Similarity=0.461 Sum_probs=46.5
Q ss_pred HHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174 167 QMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD 229 (271)
Q Consensus 167 L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D 229 (271)
|++.|++++|++.++++++. +|+ ..++++.++++++-+|++++|.. ++.+...+ |.|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR---NPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH---TTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTH
T ss_pred ChhccCHHHHHHHHHHHHHH---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCH
Confidence 56789999999999999853 343 56788899999999999999999 77888777 554
No 17
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.32 E-value=0.0024 Score=53.37 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=81.0
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174 153 SAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 153 s~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R 231 (271)
+.........++..+...|+.++|++.++++++.... +.+...+-..++.++...|+|++|+. ++...+.. |.+.+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 107 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPS 107 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHH
Confidence 3345556788999999999999999999999875432 22234567788999999999999999 66666555 88888
Q ss_pred chhHHHHHHHhhCh---------------HHHHHHHHHHHhhcC
Q 024174 232 FPFYKAIIYTMLNM---------------EEAKKWWEEFAETID 260 (271)
Q Consensus 232 ~~L~k~IIYtmL~k---------------~EA~k~we~f~~lv~ 260 (271)
.+...|.+|.-+++ ++|.++|++-.++-|
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 88889999988765 467777777666555
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.23 E-value=0.0028 Score=61.03 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
....+...+..+...|+.++|.+.++.+.+.. |.. .+..+.+++++..+|+|++|++ +++..+.+ |.+.+.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 197 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAID---PRS-LYAKLGLAQLALAENRFDEARALIDEVLTAD--PGNVDALL 197 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC-hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 34445566666777788888888888776532 221 2345677777777788888877 55665555 67777777
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|...++ ++|.++|++-.++.|
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~p 224 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRP 224 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 77777777777 777777777766655
No 19
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.23 E-value=0.0026 Score=58.64 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=76.7
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHHHHhhcCCCcc--cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---CC
Q 024174 159 AIKAEAVKQ-MKYGKPEFAVTLLKKVYEDCKNEPEPA--YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---GR 231 (271)
Q Consensus 159 ~lk~~A~~L-~kSgk~deave~Le~A~eka~~e~eea--ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~R 231 (271)
..=..|..| .+.|++++|.+.++..++.. |... .+....+++.+..+|+|++|+. ++.+++.. |.+ .-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhH
Confidence 334455555 66799999999998877544 5443 4888999999999999999999 66787654 433 33
Q ss_pred chhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
..+..|.||.-+++ ++|.+.+++..+..|.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34557899988999 9999999999999884
No 20
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.22 E-value=0.0032 Score=53.93 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC---
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR--- 231 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R--- 231 (271)
..+.+-..+..+...|+.++|.+.++++++....+ .........+++++..+|+|++|+. ++.+.... |.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 35567888889999999999999999887643222 2334567889999999999999999 88888776 76665
Q ss_pred chhHHHHHHHhh--------Ch-HHHHHHHHHHHhhcCC
Q 024174 232 FPFYKAIIYTML--------NM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 232 ~~L~k~IIYtmL--------~k-~EA~k~we~f~~lv~~ 261 (271)
.++..|.+|.-+ ++ ++|.+.++++.+..|.
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 467788888765 66 9999999999988884
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.12 E-value=0.0028 Score=57.55 Aligned_cols=102 Identities=10% Similarity=-0.050 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e-eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
......++..+.+.|+.++|++.++.+.+....+.. ..-.+...++.++..+|++++|.+ +++..+.+ |.+.+.++
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 218 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASI 218 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHH
Confidence 344556666666777777777777765542211111 111233456666677777777777 55655544 66677777
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|.-.++ ++|.++|++..+..|
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 77777777777 777777777766544
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.11 E-value=0.0028 Score=61.05 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
...+-..|..+...|++++|.+.++++.+.. |. .....+.++.++..+|++++|+. +++..+.+ |.|.+.++.
T Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~ 232 (899)
T TIGR02917 159 LYAKLGLAQLALAENRFDEARALIDEVLTAD---PG-NVDALLLKGDLLLSLGNIELALAAYRKAIALR--PNNPAVLLA 232 (899)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHH
Confidence 4457788888999999999999999887642 32 23466777888888999999998 66776666 888888888
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.+|.-.++ ++|.+.+++..+..|
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~ 258 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAP 258 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888888 888888888877766
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=97.11 E-value=0.0032 Score=62.37 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
...++..+...|+.++|.+.+++|++.. |... ..-..++.++..+|+++||+. ++....-+ |.+...+..++.
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~-~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~ 414 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLS---PISA-DIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLW 414 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHH
Confidence 4445555666677777777777776532 2211 123445666666777777776 55555555 665555555565
Q ss_pred HHHhhCh-HHHHHHHHHHHhhc
Q 024174 239 IYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv 259 (271)
++..+++ +||.+++++.....
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhc
Confidence 6666666 66666666655443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.05 E-value=0.0057 Score=63.04 Aligned_cols=106 Identities=9% Similarity=-0.002 Sum_probs=91.2
Q ss_pred CCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC
Q 024174 150 PGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS 228 (271)
Q Consensus 150 ~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~ 228 (271)
..|+..........|..+...|+.++|++.|+++.+. .|.. ..+.+.++.++.-+|++++|++ ++.....+ |.
T Consensus 352 ~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd 425 (765)
T PRK10049 352 SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGN-QGLRIDYASVLQARGWPRAAENELKKAEVLE--PR 425 (765)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC
Confidence 4555455667778899999999999999999998864 3444 5699999999999999999999 77777777 99
Q ss_pred CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 229 DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 229 D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
|....+.+|.++--+++ ++|++..++..+..|.
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999 9999999999998883
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.05 E-value=0.0042 Score=61.69 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
....+..+...|+.++|++.++++++. +|. ..+..+.++.++..+|+|++|+. ++...+.+ |.|...+...|.
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~ 407 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIEL---DPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQ 407 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 344455556678888999888888853 232 23345677888888899999998 66666666 888888888899
Q ss_pred HHHhhCh-HHHHHHHHHHHhhcC
Q 024174 239 IYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+|..+++ ++|.++|++-.++-|
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCc
Confidence 9988888 999999888888877
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.02 E-value=0.0028 Score=57.56 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc-----hh
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF-----PF 234 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~-----~L 234 (271)
..++..+...|+.++|++.++++.+. ++ ........++.++..+|+|++|++ ++.+.+.. |.+.+. ++
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 184 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDE---GD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG--GDSLRVEIAHFYC 184 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcC---Cc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence 33344444444444444444444321 11 112233444455555555555555 33443332 222221 11
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-.|.+|.-.++ ++|.+.|++..+..|
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 12333334444 555555555554443
No 27
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.01 E-value=0.0011 Score=49.18 Aligned_cols=81 Identities=28% Similarity=0.265 Sum_probs=59.0
Q ss_pred cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HH
Q 024174 170 YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EE 247 (271)
Q Consensus 170 Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~E 247 (271)
.|.++.|+...++.++.-..++ ...+-+.+++.+..+|+|++|.. ++. .+-+ ++..+.....|-+|-=|++ +|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHH
Confidence 5788999999999987553322 33344457999999999999998 555 3223 4555556666999999999 99
Q ss_pred HHHHHHHH
Q 024174 248 AKKWWEEF 255 (271)
Q Consensus 248 A~k~we~f 255 (271)
|.+.++++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.95 E-value=0.0052 Score=61.04 Aligned_cols=96 Identities=10% Similarity=0.055 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
.....+..+...|++++|++.++++++. +|.. .++-..+++++..+|+|++|+. |+...+.+ |.+...++..|
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la 440 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKL---NSED-PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLG 440 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHH
Confidence 3445555566667777777777776653 2211 2344455556666666666665 44444333 44444444444
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+|..+++ ++|...+++-.+..|
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44444444 444444444444433
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.94 E-value=0.0043 Score=63.13 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+....-.++..+...|+.++|++.++.+++. +|.. ..+...++.++.-+|+|++|+. |+.+...+ |.+...++
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDL-PYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 4566778899999999999999999988863 3432 3467778999999999999999 77888776 77766666
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.|.+|..+|+ +||.+++++..+.-|
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 67899999999 999999999988877
No 30
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.93 E-value=0.0024 Score=44.81 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=50.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD 229 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D 229 (271)
..|..+...|++++|++.++.+++ .+ -...++...++.++..+|++++|+. ++.+.+.+ |.|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~---~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK---QD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD--PDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC---CS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH---HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCC
Confidence 467889999999999999998884 23 3478899999999999999999999 77777666 654
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=96.91 E-value=0.0054 Score=60.80 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
...-.++..+...|+.++|++.++.|++. +|.... ..+.++.++..+|+|+||.. ++++.+.+ .|.+...+.+.
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~-~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~l 447 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAA-AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQ 447 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChh-hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHH
Confidence 34566788888999999999999999853 454321 22334556778999999999 66766553 15566668889
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+|..+|+ +||.++++++...-|
T Consensus 448 a~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 448 VMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHHHhCCCHHHHHHHHHHhhhccc
Confidence 999999999 999999998766544
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.89 E-value=0.0058 Score=54.23 Aligned_cols=99 Identities=27% Similarity=0.233 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+..-+...|....+.|+.++|++.+++|++. +|. ..++...++-+++-.|++++|.. +..+.+.. |+|.+...
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 218 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALEL---DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWD 218 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHH
Confidence 4556778888889999999999999999863 333 23467778889999999999777 66777666 78888888
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-|..|.-|+. ++|-.+|++-....|
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHhccccccccccccccccccccc
Confidence 88999999999 999999999888877
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.87 E-value=0.0077 Score=55.04 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
..-..++.....|+.++|+..+++|++. +|.. ...-..++.++..+|+|++|+. ++...+-+ |.+.-.++..|
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg 139 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALAL---RPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRG 139 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 3556667777788888888888877753 3322 3445667788888888888888 66666555 77777888888
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
++|.-.+. +||.+.|+++.++-|.
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 88888888 8888888888887773
No 34
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.81 E-value=0.0041 Score=41.48 Aligned_cols=62 Identities=27% Similarity=0.267 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
-..++.++..+|++++|.. +++..+.. |.+...++..|.+|.-.+. ++|.+++++.....+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567888899999999999 66777666 7777888899999999999 9999999998887773
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.68 E-value=0.0087 Score=64.32 Aligned_cols=103 Identities=11% Similarity=0.041 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc----------ccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP----------AYNVEMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee----------aynirmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
+.+.+..++..+...|+.++|.+.++++++...+.... .|.+.+..+++++.+|++++|.. |++....+
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45567788888888899999999999888654332221 24455666888888999999999 77877777
Q ss_pred CCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 225 RIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 225 ~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.|...++..|-+|...++ +||.+++++=.++-|
T Consensus 382 --P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 382 --NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888888888999999999 999999888777666
No 36
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.64 E-value=0.0014 Score=46.02 Aligned_cols=54 Identities=24% Similarity=0.304 Sum_probs=48.8
Q ss_pred HHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 205 LIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 205 lI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
++-+|+|++|+. ++.+.+.+ |.|....+.-|.+|.-.+. ++|++.|++....-|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 467899999999 88999888 9999999999999999999 999999999888877
No 37
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.60 E-value=0.0031 Score=52.04 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=61.3
Q ss_pred HHHHHHhhc-CCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174 181 KKVYEDCKN-EPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 181 e~A~eka~~-e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~ 257 (271)
+..++.+-+ +|+..+ ..+..+..+|+|++|+. |+.+...+ |.|.+.+.-.|.++..+++ ++|..+|++=.+
T Consensus 13 ~~~~~~al~~~p~~~~----~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPETVY----ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444333 465433 35788888999999999 77888888 9999999999999999999 999999999998
Q ss_pred hcCC
Q 024174 258 TIDD 261 (271)
Q Consensus 258 lv~~ 261 (271)
+-|.
T Consensus 87 l~p~ 90 (144)
T PRK15359 87 LDAS 90 (144)
T ss_pred cCCC
Confidence 8883
No 38
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.57 E-value=0.027 Score=46.61 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=76.1
Q ss_pred CChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174 152 PSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 152 Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~ 230 (271)
.+..........+......|++++|+..++.|+.... ++...-.+-..++.++..+|++++|++ |......+ |...
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~ 106 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLP 106 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcH
Confidence 3344566678889999999999999999999987532 222222356678899999999999999 66555444 6667
Q ss_pred CchhHHHHHHH-------hhCh-H-------HHHHHHHHHHhhcC
Q 024174 231 RFPFYKAIIYT-------MLNM-E-------EAKKWWEEFAETID 260 (271)
Q Consensus 231 R~~L~k~IIYt-------mL~k-~-------EA~k~we~f~~lv~ 260 (271)
..+..-|.||. .+++ + +|..+|++-..+-|
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 77888899999 4455 5 55555555555555
No 39
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.53 E-value=0.02 Score=46.16 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--C-cc---------------cchHHHHHHHHHHhcchHHHhh-
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--E-PA---------------YNVEMALVEILIYQGKYREALE- 216 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--e-ea---------------ynirmllvEilI~qGk~~EAL~- 216 (271)
.|..+-..|......+..+.+.+.+++|+..++.+. . +. .++-..+++.+.-+|++++|+.
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 455666678888888999999999999999988662 1 00 1122345666777899999999
Q ss_pred hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 217 CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 217 ~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|+.+...+ |-|-+.+....-+|.-.|. .+|.+.+++|++..-
T Consensus 85 ~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 85 LQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88999888 9999999999999999999 999999999988765
No 40
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.53 E-value=0.024 Score=48.51 Aligned_cols=99 Identities=21% Similarity=0.116 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH--------hcchHHHhh-hhhhcccCCCCCC
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY--------QGKYREALE-CNCLKDEQRIPSD 229 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~--------qGk~~EAL~-~~~L~~e~~~p~D 229 (271)
..-.++.-+...|+.++|.+.++++++..-+++... +.-..++.++.. +|++++|.+ ++.+.+.+ |.+
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~ 148 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD-YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNS 148 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH-HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCC
Confidence 345566777777888888888887776554333221 112222333322 266667776 55555554 554
Q ss_pred CCch-----------------hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 GRFP-----------------FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ~R~~-----------------L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.. +..|-+|--.++ ++|..+++++.+..|
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 3321 233444545556 666666666666665
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.51 E-value=0.018 Score=54.71 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
.--.|.-....|+.+.|.+.|+.+.+ ..|...-.+++..+++++.+|+|++|+. .+.+.+.+ |+|.......+.
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~---~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~ 195 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAE---LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEE 195 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 33666777888999999999999864 2344444678888999999999999999 77899888 999999999999
Q ss_pred HHHhhCh-HHHHHHHHHHHhh
Q 024174 239 IYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~l 258 (271)
+|.-.+. ++|.+..+++.+.
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 9999999 9999999999977
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.44 E-value=0.011 Score=44.05 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC---CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCC
Q 024174 196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG---RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDEEF 264 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~---R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f 264 (271)
++...+++.+.-+|+|++|.+ |..+.... |.+. ...+..|.+|.-.++ ++|.++|+++..+.|...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence 345677888889999999999 77887665 5543 356779999999999 9999999999999884333
No 43
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.44 E-value=0.042 Score=47.69 Aligned_cols=105 Identities=20% Similarity=0.262 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC---
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR--- 231 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R--- 231 (271)
+...+=..|..+...|++++|.+.++......-. ..-+.+.++.++..+..+|+|++|.. ++++.+.- |..-+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhh
Confidence 4567888999999999999999999987765432 35667889999999999999999999 88888776 77655
Q ss_pred chhHHHHHHHhhCh------------HHHHHHHHHHHhhcCCCC
Q 024174 232 FPFYKAIIYTMLNM------------EEAKKWWEEFAETIDDEE 263 (271)
Q Consensus 232 ~~L~k~IIYtmL~k------------~EA~k~we~f~~lv~~~~ 263 (271)
-++.+|..|-.+.+ .+|...|++|.+..|...
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 45667777654432 488999999999999543
No 44
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.41 E-value=0.036 Score=49.87 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC--c
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR--F 232 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R--~ 232 (271)
....+-.++..+...|+.++|.++++.+++...++ -.+-..+++++..+|+++||.. +++..+....+.+.+ .
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 34556678888999999999999999999754333 3456778999999999999999 665554431123333 2
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
++..|.+|.-.|+ ++|..++++....
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 4568999999999 9999999987543
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.41 E-value=0.019 Score=54.66 Aligned_cols=96 Identities=7% Similarity=-0.060 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+....-..|..+...|+.++|.+.|+++++ +.+ +-++++..-.+..|++++|++ ++.+.+.. |.|....+
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~----~~~l~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l 332 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY----DERLVLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWS 332 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC----CHHHHHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHH
Confidence 344566778899999999999999999986 222 225555555556799999999 77888777 99999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.|-++.-.+. ++|+++||+-.+.-|
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999 999999999888777
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.23 E-value=0.019 Score=61.86 Aligned_cols=103 Identities=15% Similarity=0.040 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccch--------------------------------------
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNV-------------------------------------- 197 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeayni-------------------------------------- 197 (271)
+...+..++..+...|+.++|.+.++++++..-.+....+.+
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 345667788889999999999999999886432221111111
Q ss_pred HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-..+++++..+|++++|++ |++....+ |.|...++..|.+|.-+++ ++|.+.+++..++-|
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1235667777899999999 77877777 9999999999999999999 999999999988776
No 47
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.17 E-value=0.013 Score=57.30 Aligned_cols=84 Identities=23% Similarity=0.163 Sum_probs=64.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174 163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT 241 (271)
Q Consensus 163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt 241 (271)
+|..+...+++.+|++.|+++++ +.|.+ +++=.+-|+.|+.+|+|+.|++ .++.+.-. |.||+...+-|-+|.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~---~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALK---ENPQD-SELLNLQAEFLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYI 279 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---hCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence 56666667788899999999884 23433 4444445666888999999999 55777655 999999999999999
Q ss_pred hhCh-HHHHHHH
Q 024174 242 MLNM-EEAKKWW 252 (271)
Q Consensus 242 mL~k-~EA~k~w 252 (271)
.++. |+|-.-=
T Consensus 280 ~~~d~e~ALlaL 291 (395)
T PF09295_consen 280 QLGDFENALLAL 291 (395)
T ss_pred hcCCHHHHHHHH
Confidence 9999 9996443
No 48
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.15 E-value=0.027 Score=58.77 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+++.+-.+|..++..|.+|+|+..|+.+++.+ |+- -..+..++.+|.-+++++||+. |+++.+-+ |..+...+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~-~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDS-SEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCc-HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence 46778889999999999999999999888644 322 2457788888888999999998 77888777 88888888
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHh
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~ 257 (271)
-+|+.-.-+|+ +||..+|++=..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh
Confidence 88999999999 999888877665
No 49
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.12 E-value=0.028 Score=60.68 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
++-.=..+.++...|++++|++.++.+++ -+|.. ..+.+.|+++++.+|++++|+. +++.++-+ |.|++.++.
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~---~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~ 117 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQ---QVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERS 117 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH
Confidence 44466778888889999999999999985 45666 8888999999999999999999 66777777 888888887
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
-+.| ++ ++|.++.|+-.++-|.
T Consensus 118 La~i----~~~~kA~~~ye~l~~~~P~ 140 (987)
T PRK09782 118 LAAI----PVEVKSVTTVEELLAQQKA 140 (987)
T ss_pred HHHh----ccChhHHHHHHHHHHhCCC
Confidence 6665 77 9999999988887773
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.12 E-value=0.013 Score=45.74 Aligned_cols=68 Identities=29% Similarity=0.258 Sum_probs=58.2
Q ss_pred CCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 190 EPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 190 e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+|+. .+....++..++.+|++++|+. ++++...+ |.+.+.+...|.+|..++. ++|.++|++-.+.-|
T Consensus 13 ~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 13 DSEQ-LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred Chhh-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3443 4778899999999999999999 66777666 8999999999999999999 999999998877766
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.86 E-value=0.058 Score=55.78 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
.+..+|.-+...|+.++|++.++++++. +|.. .++...++.++.-+|++++|+. ++++.+.. |.|.. ++-.|
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la 123 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQN-DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALA 123 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHH
Confidence 4777888888889999998888888753 3332 3455678888888899999988 77777776 88888 77778
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+|...++ ++|.+.+++..++-|
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC
Confidence 88888888 889988888888877
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.81 E-value=0.017 Score=52.76 Aligned_cols=90 Identities=12% Similarity=-0.017 Sum_probs=69.2
Q ss_pred hcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-H
Q 024174 169 KYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-E 246 (271)
Q Consensus 169 kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~ 246 (271)
.+++.+.++..+...+....-+++.--..-..++.++..+|++++|.. |++..+.+ |.+...+...|++|..+++ +
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHH
Confidence 344667888888888765433333212223344556777899999999 77877777 9999999999999999999 9
Q ss_pred HHHHHHHHHHhhcC
Q 024174 247 EAKKWWEEFAETID 260 (271)
Q Consensus 247 EA~k~we~f~~lv~ 260 (271)
+|.++|++-.++-|
T Consensus 116 ~A~~~~~~Al~l~P 129 (296)
T PRK11189 116 AAYEAFDSVLELDP 129 (296)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998887
No 53
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.69 E-value=0.084 Score=47.78 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch---h
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP---F 234 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~---L 234 (271)
.+=+.|......|++++|++.++...+... +...+.+..+.++..+..+|+|++|.. ++++.+.. |.+-+.. .
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~--P~~~~~~~a~Y 110 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--cCCCchHHHHH
Confidence 356789999999999999999998876443 235666778999999999999999999 77888777 7775544 4
Q ss_pred HHHHHHHhh----------------ChH---HHHHHHHHHHhhcCCCC
Q 024174 235 YKAIIYTML----------------NME---EAKKWWEEFAETIDDEE 263 (271)
Q Consensus 235 ~k~IIYtmL----------------~k~---EA~k~we~f~~lv~~~~ 263 (271)
.+|..+--+ |.+ +|-+.+++|.+..|..+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 445554222 223 45566777777777443
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.62 E-value=0.024 Score=50.33 Aligned_cols=92 Identities=22% Similarity=0.169 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.+.+..++..+...|+.+++.+.|+...+... ....+...++..+...|++++|+. +..+.+.+ |.|....+-
T Consensus 180 ~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~ 253 (280)
T PF13429_consen 180 PDARNALAWLLIDMGDYDEAREALKRLLKAAP----DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLA 253 (280)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc----CHHHHHHHHHHHhcccccccccccccccccccc--ccccccccc
Confidence 34466777788899999988787776554442 223467788999999999999999 77888888 999999999
Q ss_pred HHHHHHhhCh-HHHHHHHHH
Q 024174 236 KAIIYTMLNM-EEAKKWWEE 254 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~ 254 (271)
-|-++...|. +||.+.-.+
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHT--------------
T ss_pred cccccccccccccccccccc
Confidence 9999999999 999765443
No 55
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.60 E-value=0.073 Score=54.34 Aligned_cols=89 Identities=16% Similarity=0.016 Sum_probs=41.9
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHH----Hhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174 166 KQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYRE----ALE-CNCLKDEQRIPSDGRFPFYKAIIY 240 (271)
Q Consensus 166 ~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~E----AL~-~~~L~~e~~~p~D~R~~L~k~IIY 240 (271)
.|...|+.++|.+.++.+++. +|. ...+...++.++..+|++++ |+. |+.....+ |.|.+.+...|.+|
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~---~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l 294 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALAR---GLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADAL 294 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Confidence 344555555555555555532 111 12333445555555555553 344 33443333 45555555555555
Q ss_pred HhhCh-HHHHHHHHHHHhhcC
Q 024174 241 TMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 241 tmL~k-~EA~k~we~f~~lv~ 260 (271)
.-.++ +||..++++..++-|
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCC
Confidence 55555 555555555444444
No 56
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.47 E-value=0.076 Score=47.77 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=64.6
Q ss_pred cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HH
Q 024174 170 YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EE 247 (271)
Q Consensus 170 Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~E 247 (271)
.++.+.+.+.++. ............-.++.++..+|+|++|.+ +.+..+.+ |.|.-.+..-|.||...++ +|
T Consensus 93 ~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 93 SGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred ccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHH
Confidence 4555555444442 222333444555677889999999999999 77777666 8998888899999999999 99
Q ss_pred HHHHHHHHHhhcC
Q 024174 248 AKKWWEEFAETID 260 (271)
Q Consensus 248 A~k~we~f~~lv~ 260 (271)
|.++.++-.++.|
T Consensus 167 A~~~l~~~l~~~~ 179 (355)
T cd05804 167 GIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHhhhhccC
Confidence 9999999888876
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.33 E-value=0.09 Score=56.91 Aligned_cols=97 Identities=23% Similarity=0.162 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
.....++..+.+.|+.++|++.++.+++. +|... .+...++-++..+|++++|+. |+...+.+ |.|.-.+.-.
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~-~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nL 683 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNS-NYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQL 683 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34566677778888888888888877753 34332 466777777778888888888 66666666 8888888888
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+|..+|+ +||..++++=.++-|
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999998888 889888887776666
No 58
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.32 E-value=0.032 Score=39.28 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhc-chHHHhh-hhh
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQG-KYREALE-CNC 219 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qG-k~~EAL~-~~~ 219 (271)
-......+..+...|++++|++.+++|++.. |+ ...+-.-++.++..+| ++++|++ ++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PN-NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3457788999999999999999999999864 33 2447777888899999 7999999 554
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.31 E-value=0.14 Score=54.61 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
...+..+|..+...|++++|++.++++++ .+|.. .++...++..+.-.|++++|++ ++.++..+ |. .+.++.
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~---~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~-~~~~l~ 174 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLK---KDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERD--PT-VQNYMT 174 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cc-hHHHHH
Confidence 44566677788888888888888888875 34443 2333466777777888888888 66777666 44 455544
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+-||.-.++ .+|-+.+++-.++-|
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 4444444555 568888887777766
No 60
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.18 E-value=0.082 Score=56.20 Aligned_cols=94 Identities=9% Similarity=-0.025 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~-eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
+..++..+...|+.++|++.++++. ++ ...+...+++|.++..+|+|++|+. |+.+.+.+ |.|.-.++..+
T Consensus 71 v~dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa 143 (822)
T PRK14574 71 VDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMI 143 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 3366777777799999999999887 43 3445566667889999999999999 88998888 89866666666
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+|.-+++ +||.+..++....-|
T Consensus 144 ~~y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 144 MTQADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred HHHhhcCCHHHHHHHHHHhcccCc
Confidence 78888888 888888887776655
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.18 E-value=0.11 Score=54.25 Aligned_cols=100 Identities=10% Similarity=-0.082 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
+.+.+....|..|.+.++.++|+.-.+.++. .+ -+..+...++++.|+-.|+|+||.. |.++..++ |.+....
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~ 191 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGY 191 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHH
Confidence 4577899999999999999999999998884 23 3456788999999999999999999 88888766 8889999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+-.|+.+.=+|+ ++|.-.|++=-++..
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 999999999999 999988876544443
No 62
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.95 E-value=0.16 Score=36.57 Aligned_cols=60 Identities=25% Similarity=0.177 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCccc---chHHHHHHHHHHhcchHHHhh
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAY---NVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeay---nirmllvEilI~qGk~~EAL~ 216 (271)
...+...+..+...|++++|.+.++++++.++.-+.+-. ..---|+.++..+|++++|++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445778888899999999999999999998655444322 233456788888999999998
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.94 E-value=0.15 Score=48.62 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=71.3
Q ss_pred HHHHH-HhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174 163 EAVKQ-MKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY 240 (271)
Q Consensus 163 ~A~~L-~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY 240 (271)
+|... ...|+.+.|.+.|++|.+ .+++..-..++..+++.+.+|++++|++ ++.+.+.+ |++-......+-+|
T Consensus 123 laA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~ 197 (398)
T PRK10747 123 LAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 44444 889999999999998874 3455555677778999999999999999 78888888 88887777888888
Q ss_pred HhhCh-HHHHHHHHHHHh
Q 024174 241 TMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 241 tmL~k-~EA~k~we~f~~ 257 (271)
.-.+. ++|.+..++-++
T Consensus 198 ~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 88888 888855555543
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.092 Score=54.23 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCccc---chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAY---NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeay---nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
.++.+.++-=..+.+.+|.+.+++|+++.+....+-. -+...|+.++..+++|+||+. +++-.--+ |+|.+.|=
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--~k~~~~~a 493 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--PKDASTHA 493 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--CCchhHHH
Confidence 4667777777778999999999999988876543332 345678999999999999999 66533334 89999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
=-|.||.+|+. +.|-..|.|=--+-|.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 99999999999 9999999986666553
No 65
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.22 E-value=0.42 Score=38.92 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-CC--ch
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-GR--FP 233 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-~R--~~ 233 (271)
+-..++.....++.+.+.+.++.-.+ +.+. -+...+|.++++++.+|+|++|.. ++.+.+.. |.+ .+ -.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 34445555567887777665554333 2332 466788999999999999999999 77777665 222 11 23
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCCCC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETIDDEEFDP 266 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~~ 266 (271)
|.-|-||.-.++ ++|.+..+. ++...|.+
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~----~~~~~~~~ 118 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ----IPDEAFKA 118 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh----ccCcchHH
Confidence 445777777788 999988755 44355544
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.18 Score=52.40 Aligned_cols=106 Identities=22% Similarity=0.328 Sum_probs=74.2
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC------CCcccc-----hHHHHHHHHHHhcchHHHhh
Q 024174 148 VPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE------PEPAYN-----VEMALVEILIYQGKYREALE 216 (271)
Q Consensus 148 ~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e------~eeayn-----irmllvEilI~qGk~~EAL~ 216 (271)
+|..| +...+.+=++|-.|...|+++.|.+.|++|+..|++. .+|++. |++-|+=++-.+|+.+||+.
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34444 3468889999999999999999999999998888753 234443 44555556677899999999
Q ss_pred -hhhhcccCCCCCC-----------------CCc------hhHHHHHHHhhCh---HHHHHHHHHHH
Q 024174 217 -CNCLKDEQRIPSD-----------------GRF------PFYKAIIYTMLNM---EEAKKWWEEFA 256 (271)
Q Consensus 217 -~~~L~~e~~~p~D-----------------~R~------~L~k~IIYtmL~k---~EA~k~we~f~ 256 (271)
|.++...+ |.| +.. -+.+-+.-++.+. .=-++||+.|.
T Consensus 246 iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 246 IYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88766555 333 222 2466677777666 44567777764
No 67
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.02 E-value=0.15 Score=36.01 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=48.2
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 166 KQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 166 ~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.....++.++|++.++.+++. +|+ ...+....+.++..+|+|++|+. ++...+.+ |.|.-....
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~~~~ 68 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL---DPD-DPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPDARAL 68 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---Ccc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHHHHHH
Confidence 456788999999999988864 333 45566778999999999999999 77666666 666444433
No 68
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.96 E-value=0.12 Score=46.97 Aligned_cols=99 Identities=27% Similarity=0.301 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHh-cchHHHhh-hh---hhcccCCCCCCCCc
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQ-GKYREALE-CN---CLKDEQRIPSDGRF 232 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e--~eeaynirmllvEilI~q-Gk~~EAL~-~~---~L~~e~~~p~D~R~ 232 (271)
+.. |..+.+..+.++|++.+++|.+.+.+. +..+-.+...+++++--+ |++++|++ |+ +++.++-.+....-
T Consensus 78 ~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~ 156 (282)
T PF14938_consen 78 YEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAE 156 (282)
T ss_dssp HHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHH
Confidence 444 444445559999999999999998876 467777888999999999 99999999 77 45555412333333
Q ss_pred -hhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 233 -PFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 233 -~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
++--|.+|.-+++ ++|-+.|++.-...
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3445778899999 99999999987653
No 69
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.75 E-value=0.36 Score=39.90 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=65.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC---CCCchhHHH
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS---DGRFPFYKA 237 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~---D~R~~L~k~ 237 (271)
..|.-+..-|++++|+..-+.|++.- -+.+......+-++..+...|+++||+. .++...+- |. +.+...+.+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 45666777799999999999888621 1134446677888888999999999998 66666554 66 566667778
Q ss_pred HHHHhhCh-HHHHHHHH
Q 024174 238 IIYTMLNM-EEAKKWWE 253 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we 253 (271)
+...-+++ +||-.+.-
T Consensus 83 l~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 88888888 88887764
No 70
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.75 E-value=0.38 Score=42.55 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=76.0
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh---hhcccC
Q 024174 149 PPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN---CLKDEQ 224 (271)
Q Consensus 149 ~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~---~L~~e~ 224 (271)
+..|-.+.-..|.-.++-|..+|+.|.|+|...+|++.|-+. ..+||=| +|-+-.||+-++||. .. +|.+..
T Consensus 35 ~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-aSayNNR---AQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 35 PDTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER-ASAYNNR---AQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-hHhhccH---HHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 344555556678888899999999999999999999988433 4567766 789999999999995 33 233322
Q ss_pred CCCCCCCc-hhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 225 RIPSDGRF-PFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 225 ~~p~D~R~-~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
-+-++- |.-.|.||-++|. |.|.--||.=-+|
T Consensus 111 --trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 --TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred --chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 222332 3345889999999 9999888865444
No 71
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.12 E-value=0.071 Score=38.47 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcchHHHhh-hhh-hcccCCCCCC----CCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 198 EMALVEILIYQGKYREALE-CNC-LKDEQRIPSD----GRFPFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~-L~~e~~~p~D----~R~~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
-..|+.++..+|+|++|+. |++ |.-....+.| +..+.--|.+|..+++ ++|.+++++=.++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3568999999999999999 553 2221111222 4556678999999999 9999999875544
No 72
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.78 E-value=0.15 Score=37.65 Aligned_cols=53 Identities=30% Similarity=0.391 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~ 216 (271)
-+-++|.-+...|++++|.+.+++ .+ .++ ....+..++++.++-.|+|+||++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LK---LDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HT---HHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hC---CCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 456689999999999999999987 21 112 225677788999999999999997
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.76 E-value=0.44 Score=41.67 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=65.2
Q ss_pred ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH-HHhhCh---H
Q 024174 172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII-YTMLNM---E 246 (271)
Q Consensus 172 k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II-YtmL~k---~ 246 (271)
+.++++..|+.+++ .+|.. .+.-+.+++++..+|+|++|+. |.....-+ |.|...++-.|.+ |...|. +
T Consensus 54 ~~~~~i~~l~~~L~---~~P~~-~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIR---ANPQN-SEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hHHHHHHHHHHHHH---HCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 44566666666653 34433 3467788999999999999999 77877666 9999999999986 566665 8
Q ss_pred HHHHHHHHHHhhcCC
Q 024174 247 EAKKWWEEFAETIDD 261 (271)
Q Consensus 247 EA~k~we~f~~lv~~ 261 (271)
+|.+..++..++-|.
T Consensus 128 ~A~~~l~~al~~dP~ 142 (198)
T PRK10370 128 QTREMIDKALALDAN 142 (198)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999998883
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=92.73 E-value=0.36 Score=46.04 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--------------------------------CCccc--chHHHHH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--------------------------------PEPAY--NVEMALV 202 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e--------------------------------~eeay--nirmllv 202 (271)
....-..|..+...|+.++|.+.|++++++.-.+ ..+.. .+...++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg 342 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG 342 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 3344555666677777777777777666532111 01222 4566777
Q ss_pred HHHHHhcchHHHhhhhh---hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 203 EILIYQGKYREALECNC---LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 203 EilI~qGk~~EAL~~~~---L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
.+++.+|+|++|.+|-+ ..+.+ |.+ -.+.--|-+|--+|+ ++|.++|++-..+
T Consensus 343 ~l~~~~~~~~~A~~~le~a~a~~~~--p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 343 QLLMKHGEFIEAADAFKNVAACKEQ--LDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHcccHHHHHHHHHHhHHhhcC--CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777444 33333 332 224455777777777 7777777765443
No 75
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.65 E-value=2.2 Score=36.86 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC---chh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR---FPF 234 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R---~~L 234 (271)
.|=+.|.....+|++++|++.|+.-.... =-++=+.+.+|-|+-.+..+|+|++|+. ++.+..-+ |.--. -+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y 88 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHH
Confidence 47788999999999999999998544321 1146667999999999999999999999 88888776 55443 245
Q ss_pred HHHHHHHhhCh-------------HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-------------EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-------------~EA~k~we~f~~lv~ 260 (271)
.+|++|--.+. .-+++-+..|.++|.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 67877766531 445566666666554
No 76
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.60 E-value=0.27 Score=51.27 Aligned_cols=105 Identities=21% Similarity=0.101 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
..-++-=++-+.-.|.+|.+.|.=-+++|++ =.-...-+-.-+..++-..|+.|+||. ++.=..-+ |+|-=+-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~ 560 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCK 560 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhH
Confidence 4455566777777888999999888888874 222334455567778888899999998 66544445 8998888
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCCC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETIDDEEFD 265 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~ 265 (271)
+.+|-|+.-|++ +||-+-.|+-+++||+|.+-
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v 593 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSV 593 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence 899999999999 99999999999999976553
No 77
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.59 E-value=0.37 Score=45.79 Aligned_cols=83 Identities=17% Similarity=0.054 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
....-..|..+...|++++|+..++.|++.. |. .......++.++...|+|++|+. |+....-+ |.|.+...+
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELD---PS-LAKAYLRKGTACMKLEEYQTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 4457788888999999999999999998753 32 12234566888889999999999 77666666 899998888
Q ss_pred HHHHHHhhCh
Q 024174 236 KAIIYTMLNM 245 (271)
Q Consensus 236 k~IIYtmL~k 245 (271)
.+.+...|.+
T Consensus 110 l~~~~~kl~~ 119 (356)
T PLN03088 110 IKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHh
Confidence 8888777754
No 78
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=91.90 E-value=0.7 Score=45.51 Aligned_cols=97 Identities=21% Similarity=0.198 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
...+...+...+..++|.++|++-.+ ++| ++-.+||++++..++-.+|.+ .++..+++ |.|.-.-..||=
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~---~~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE---RDP----EVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh---cCC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 66777888888999999999997653 344 367889999999999999999 66666666 899777777887
Q ss_pred HHHhhCh-HHHHHHHHHHHhhcCCCCCCC
Q 024174 239 IYTMLNM-EEAKKWWEEFAETIDDEEFDP 266 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv~~~~f~~ 266 (271)
.+--.++ +.|.+.-++=-++.| .+|..
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP-~~f~~ 270 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSP-SEFET 270 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCc-hhHHH
Confidence 7777777 999999999999999 66654
No 79
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.67 E-value=1.9 Score=44.03 Aligned_cols=82 Identities=24% Similarity=0.185 Sum_probs=62.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174 163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT 241 (271)
Q Consensus 163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt 241 (271)
...-+.+-++..+|.+++++++. .+|.. +=+++-++|+|+-.|+++||.+ .++...++ |.|.-.+=|=|=-|.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~---l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~ 419 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALA---LDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh---cCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHH
Confidence 34456677888888888887773 34555 8889999999999999999988 66777777 888777777777777
Q ss_pred hhCh-HHHHH
Q 024174 242 MLNM-EEAKK 250 (271)
Q Consensus 242 mL~k-~EA~k 250 (271)
.+++ .||..
T Consensus 420 ~~g~~~~a~~ 429 (484)
T COG4783 420 ELGNRAEALL 429 (484)
T ss_pred HhCchHHHHH
Confidence 7777 66554
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.66 E-value=1.1 Score=45.56 Aligned_cols=103 Identities=22% Similarity=0.237 Sum_probs=72.1
Q ss_pred hhH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-C---cccchHHHHHHHHHHhcchHHHhh-hh-hhcccCCCC
Q 024174 155 EDV-NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-E---PAYNVEMALVEILIYQGKYREALE-CN-CLKDEQRIP 227 (271)
Q Consensus 155 e~v-~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~-e---eaynirmllvEilI~qGk~~EAL~-~~-~L~~e~~~p 227 (271)
.+| ..+-.+++....-+++++|++++.+|++....-+ + -.-.++-=|++++..+|+|+||.+ +. .+..-. -
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~--~ 399 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR--E 399 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--h
Confidence 344 4488999999999999999999999999887433 2 334567779999999999999999 55 443332 2
Q ss_pred CCCCchhHHHHH--------HHhhChHHHHHHHHHHHhhc
Q 024174 228 SDGRFPFYKAII--------YTMLNMEEAKKWWEEFAETI 259 (271)
Q Consensus 228 ~D~R~~L~k~II--------YtmL~k~EA~k~we~f~~lv 259 (271)
.+++-.-+=|+- |.|-.++||.+-|++.+...
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 445433332332 33333378888888877654
No 81
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.60 E-value=0.32 Score=48.97 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLK 221 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~ 221 (271)
+....-+++..|.+.|++++|+..++.|++. +|. +++..-.-++-.|..+|+++||+. +..-.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677889999999999999999999999974 343 233444566777788999999998 45444
No 82
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.37 E-value=0.45 Score=47.13 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhc--CCCcccchHHHHHHHHHHhcchHHHhhhh-hhcccCCCCCCCCchhHHH
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKN--EPEPAYNVEMALVEILIYQGKYREALECN-CLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~--e~eeaynirmllvEilI~qGk~~EAL~~~-~L~~e~~~p~D~R~~L~k~ 237 (271)
-..+-.....|+.++|++.++++.+...+ +.+..-..++ +=.++++++|++|..|. .|.+++. =+-+=.+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El--~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL--AWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH--HHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 34456677789999999999998853322 1233333333 33488899999999955 8998872 23344556689
Q ss_pred HHHHhhCh-H-------HHHHHHHHHHhhcC
Q 024174 238 IIYTMLNM-E-------EAKKWWEEFAETID 260 (271)
Q Consensus 238 IIYtmL~k-~-------EA~k~we~f~~lv~ 260 (271)
+.|.|+++ + +|.+++.+=-.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999996 3 44455554444443
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.15 E-value=0.29 Score=49.65 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
+-=.++.|..+|++++|++.|++. .++.-+...+.-..|++++..|+++||.+ |..|.+.| |.+... |.++
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~----~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Y--y~~L 78 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKN----EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDY--YRGL 78 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhh----hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHH--HHHH
Confidence 344567889999999999999753 34566778888899999999999999999 88999999 766443 3343
Q ss_pred HHHh------hC-h-HHHHHHHHHHHhhcC
Q 024174 239 IYTM------LN-M-EEAKKWWEEFAETID 260 (271)
Q Consensus 239 IYtm------L~-k-~EA~k~we~f~~lv~ 260 (271)
.-.+ -+ . ++..+..+++.+-.|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp 108 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKYP 108 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhCc
Confidence 3333 12 2 555666666666665
No 84
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.09 E-value=0.43 Score=43.74 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
..-.+|...-..++.|+|+..|+.++..-+.+ -...=++| |+-+++-+|++|+||+ .....+++ =..|.---+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR--LArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elr 165 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR--LARVQLQQKKADAALKTLDTIKEES---WAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH--HHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHh
Confidence 35678888899999999999999998654443 24444455 4566778999999998 55666654 345667778
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhh
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~l 258 (271)
|=|+--+|+ +||..-|++=.+.
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHc
Confidence 888888999 9999999986554
No 85
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.02 E-value=1.3 Score=41.57 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHH-HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMA-LVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirml-lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
+.++.||..-..|-+-|.+++|.+.-..|++.|..-++++|-|=.. =+=-+|.+++++.|.+ |..-..-+ |+--|.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kA 170 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKA 170 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHH
Confidence 5578899999999999999999999999999997777777765332 2445677899999999 88655445 888888
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+-.|-.|.=+++ +||-.-+.+-.++-|
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 8888999999999 999776666665555
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.60 E-value=1.3 Score=48.06 Aligned_cols=87 Identities=28% Similarity=0.256 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccc--hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYN--VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeayn--irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R 231 (271)
++++.+..+|..|+.-|++.+|.+.|-... .+ +..++ +=.-++++++-+|.|++|.. |.-.++.+-.--|+|
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~---~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPIT---NR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHh---cC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 445555666666666666666555555332 11 12222 34445555555566666655 333222220123455
Q ss_pred chhHHHHHHHhhCh-HHH
Q 024174 232 FPFYKAIIYTMLNM-EEA 248 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA 248 (271)
..| +=||+-+|+ |+|
T Consensus 487 i~L--asl~~~~g~~Eka 502 (895)
T KOG2076|consen 487 ITL--ASLYQQLGNHEKA 502 (895)
T ss_pred hhH--HHHHHhcCCHHHH
Confidence 554 445555555 544
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.07 E-value=0.53 Score=43.90 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
.+++-+|..+....+.+.+++.|++.+.. ........++++.+-|++..|++++||+ +.+- ++ .=..+..
T Consensus 67 ~av~~la~y~~~~~~~e~~l~~l~~~~~~--~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~-----lE~~al~ 137 (290)
T PF04733_consen 67 QAVRLLAEYLSSPSDKESALEELKELLAD--QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GS-----LELLALA 137 (290)
T ss_dssp HHHHHHHHHHCTSTTHHCHHHHHHHCCCT--S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TC-----HHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHh--ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--Cc-----ccHHHHH
Confidence 45777888888767777777777755421 1122234588888899999999999997 4432 12 1133456
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-||=.+++ |.|++.++++++.-+
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 668888888 999999999987644
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=90.01 E-value=0.75 Score=46.82 Aligned_cols=95 Identities=26% Similarity=0.223 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcC---CCccc-chHHHHHHHHHHhcchHHHhh-hh---hhcccCCCCCC--
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE---PEPAY-NVEMALVEILIYQGKYREALE-CN---CLKDEQRIPSD-- 229 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e---~eeay-nirmllvEilI~qGk~~EAL~-~~---~L~~e~~~p~D-- 229 (271)
+++.|..++..+++++|+.++++|+..-++- .++.. .+=.=|+..+.-+|||+||.- |+ ++.........
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 6679999999999999999999998776532 23222 222235677888999999998 55 45555311222
Q ss_pred -CCchhHHHHHHHhhCh-HHHHHHHHH
Q 024174 230 -GRFPFYKAIIYTMLNM-EEAKKWWEE 254 (271)
Q Consensus 230 -~R~~L~k~IIYtmL~k-~EA~k~we~ 254 (271)
+-....=+.|+.+.++ |||+++..+
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 2345567889999999 999876543
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=87.55 E-value=2.5 Score=43.04 Aligned_cols=66 Identities=23% Similarity=0.191 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCC
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDEEF 264 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f 264 (271)
+-..++|.+-+.|+|++|+. ++.-.+-. |+-.=.|+.||-||-=.|. +||.++-++-|+|=.+|+|
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 55788999999999999998 55333333 7777789999999999999 9999999999888776655
No 90
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.55 E-value=2.5 Score=36.77 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhhh-hh---hcccCCCCCC--CC
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALEC-NC---LKDEQRIPSD--GR 231 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~~-~~---L~~e~~~p~D--~R 231 (271)
.....+|.-..+.|+.++|++....+.++|- .+..--++-+.++++-++.|+|....++ +. +.++. -+.+ .|
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHH
Confidence 4477888999999999999999999888763 2445556778888999999999998884 32 33331 0122 46
Q ss_pred chhHHHHHHHhhCh-HHHHHHH
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWW 252 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~w 252 (271)
.-.|+|+-+-..++ ++|.+.|
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHH
Confidence 78899999999999 9998875
No 91
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.00 E-value=0.73 Score=28.33 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=24.9
Q ss_pred CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.+..+|.||..++. ++|.++|++-.++-|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456788899999999 999999998887765
No 92
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.86 E-value=1.3 Score=40.97 Aligned_cols=54 Identities=6% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHhcchHHHhh-hhhhcccCCCCCCC---CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 206 IYQGKYREALE-CNCLKDEQRIPSDG---RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 206 I~qGk~~EAL~-~~~L~~e~~~p~D~---R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
..+|+|++|.. ++.+.+.. |.+. ..++|.|-+|--.++ ++|.+.|+++.+..|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34699999998 88888877 7773 688999999999999 9999999999999884
No 93
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.71 E-value=3.2 Score=40.16 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e-eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R 231 (271)
.++-..||..-.++|+.+++.+||..-..|++. +|+ ..|+-.= |+.|+--|.|++|.+ |.-=...+ |.=.|
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNR--AAAy~~Lg~~~~AVkDce~Al~iD--p~ysk 150 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNR--AAAYSKLGEYEDAVKDCESALSID--PHYSK 150 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcchHHHHH--HHHHHHhcchHHHHHHHHHHHhcC--hHHHH
Confidence 344667999999999999999999998888853 454 3333332 567778899999999 88333334 78889
Q ss_pred chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.==|.-|.=+|+ +||.+.|.+=-++-|
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 99999999999999 999988555444443
No 94
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.55 E-value=7.4 Score=36.84 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch---h
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP---F 234 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~---L 234 (271)
.+=..|..+-+||++++|..-..+=++++=+ ..=..|-.-.|.|.+.-||+|++|.. +-.++++- |+--+-| |
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~--P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY--PKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC--CCCCCChHHHH
Confidence 3778899999999999998877755554422 23445667789999999999999999 66777776 7666663 4
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETIDDE 262 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~~ 262 (271)
==|.|-.=|++ ++|..-|++..+-+|..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 44777777888 99999999999988853
No 95
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=86.53 E-value=1.2 Score=42.32 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDE 223 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e 223 (271)
.++..+-..|..+..+++.++|+.+|+....-+ .++-+-.+.|+++++++.-.|+++=|+. |++|..+
T Consensus 211 ~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~-~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 211 SDWEELREEARALAAEGGLEAALQRLQQRLAQA-REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457777788999999999999999999776533 3567888999999999999999999999 8888765
No 96
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.33 E-value=1.7 Score=33.58 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=42.0
Q ss_pred hcCChhHHHHHHHHHHHHhhcCCCcc-----cchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174 169 KYGKPEFAVTLLKKVYEDCKNEPEPA-----YNVEMALVEILIYQGKYREALE-CNCLK 221 (271)
Q Consensus 169 kSgk~deave~Le~A~eka~~e~eea-----ynirmllvEilI~qGk~~EAL~-~~~L~ 221 (271)
.+|++.+|++-|...++.+..+.... ..--+.+++++...|++++|++ +++-+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46899999999999999988775433 3444668999999999999998 66533
No 97
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=86.24 E-value=4.5 Score=41.15 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccchHHHHHHHHHHhcchHHHhh-hhh-------------------
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYNVEMALVEILIYQGKYREALE-CNC------------------- 219 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~e-eaynirmllvEilI~qGk~~EAL~-~~~------------------- 219 (271)
-.+...+..+|..++|.++++...+...-.|. +.|+ .|+.++...|+++||.+ +++
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~---~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA---CMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH---hHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 34556677889999999988877654322332 2333 46677777777777765 332
Q ss_pred -------------hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174 220 -------------LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 220 -------------L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~ 257 (271)
+.+-+ |.|...|..=.-+|.-.|+ +||.+.+++-++
T Consensus 507 ~g~~~~a~~~~~~l~~~~--p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred cCCcHHHHHHHHHHhCCC--CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22222 5566666666666777777 777777766554
No 98
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=6.2 Score=37.82 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcc---hHHHhh-hhhhcccCCCCCCCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGK---YREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk---~~EAL~-~~~L~~e~~~p~D~R 231 (271)
|+..--.++-.-|..|+.+.|+.-..+|+... -+..++.+.++|+|+++.+ -.+|-+ ..+...-+ |.|.|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ir 228 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIR 228 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHH
Confidence 44556667777888899999988777777543 3445789999999999854 223333 44555556 99999
Q ss_pred chhHHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWWEEFAETIDDE 262 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~ 262 (271)
.-.|=|+.|-.=++ ++|-.-|+..-.+.|++
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999 99999999999999976
No 99
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.59 E-value=0.71 Score=30.81 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R 231 (271)
+.+.+++.+.-+|++++|.+ |+..+..+ |.|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHH
Confidence 45667777777777777777 66666655 66643
No 100
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.25 E-value=2 Score=25.76 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.4
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+..|.+|-.+++ ++|.+.|+++.+..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3567888888888 999999999888887
No 101
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.15 E-value=5 Score=33.20 Aligned_cols=60 Identities=25% Similarity=0.264 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~ 216 (271)
....+..++--+..-|++++|+.+|+++.+.. .+.+-.-.++..++-.|..+|+++||+.
T Consensus 37 ~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 37 RRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHHCCCHHHHHH
Confidence 36678889999999999999999999887522 1122344677788889999999999998
No 102
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.99 E-value=2 Score=45.08 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+..-+--...-++..|+.|+|+.++++|+..=..++.. +-..+.+|+-.|+|+|||+ .++|+ +.+|.+.-.|.
T Consensus 522 nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~----~~~~~~il~~~~~~~eal~~LEeLk--~~vP~es~v~~ 595 (638)
T KOG1126|consen 522 NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC----KYHRASILFSLGRYVEALQELEELK--ELVPQESSVFA 595 (638)
T ss_pred chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh----HHHHHHHHHhhcchHHHHHHHHHHH--HhCcchHHHHH
Confidence 34445566677888899999999999998543333332 2345789999999999998 77887 44599999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
-=|-||--++. +-|.+.|--=.+|=|+
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999 9999988666666553
No 103
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.82 E-value=1 Score=27.34 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=14.0
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...|.+|-.+++ ++|.++|++-.++-|
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 344555555555 555555555555544
No 104
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=84.32 E-value=2.4 Score=35.09 Aligned_cols=68 Identities=15% Similarity=-0.004 Sum_probs=50.4
Q ss_pred cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC-CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 193 PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS-DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 193 eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~-D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..-+..+.++..+..+|+|++|+. +....+...-+. ....+...|++|.-++. +||.+.+++-.++.|
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 345566777888888999999999 665443320011 23467888999999999 999999999887755
No 105
>PLN03218 maturation of RBCL 1; Provisional
Probab=83.43 E-value=8.9 Score=42.35 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh---HHHHHHHHHHH
Q 024174 199 MALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM---EEAKKWWEEFA 256 (271)
Q Consensus 199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k---~EA~k~we~f~ 256 (271)
-.|+.++...|++++|.+ ++++.+....| | ...|-++|...... +||.+.|++-+
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-d--vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRP-T--VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555555666666666 44554333211 2 34455555554333 66666666543
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.37 E-value=2 Score=44.24 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=67.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhcCCCcccch-HHHHHHHHHHhcchHHHhh-hh-hhcccCCCCCCCCchhHHHHHH
Q 024174 164 AVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNV-EMALVEILIYQGKYREALE-CN-CLKDEQRIPSDGRFPFYKAIIY 240 (271)
Q Consensus 164 A~~L~kSgk~deave~Le~A~eka~~e~eeayni-rmllvEilI~qGk~~EAL~-~~-~L~~e~~~p~D~R~~L~k~IIY 240 (271)
....-++|++.+|++.+.+|+++ +|++++-. --++ -++.-|.|.+||+ |+ |+..+ |.=.+.|+.||+++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAa--c~~kL~~~~~aL~Da~~~ieL~---p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAA--CYLKLGEYPEALKDAKKCIELD---PNFIKAYLRKGAAL 436 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHH--HHHHHhhHHHHHHHHHHHHhcC---chHHHHHHHHHHHH
Confidence 56677889999999999998864 46544322 2222 2445699999999 77 66553 78899999999999
Q ss_pred HhhCh-HHHHHHHHHHHhhcC
Q 024174 241 TMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 241 tmL~k-~EA~k~we~f~~lv~ 260 (271)
-++.+ ++|.+.|++=.++-|
T Consensus 437 ~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHHHHHHhcCc
Confidence 99999 999988877665544
No 107
>PLN03218 maturation of RBCL 1; Provisional
Probab=83.23 E-value=9.6 Score=42.09 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
.+...+.+.|+.++|++++++..+.. ....+.-..--.|+..+...|++++|.+ ++++.+.+
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~-~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAET-HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 33444455666666666666554311 1111111222234444555555555555 44444433
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=83.21 E-value=3.9 Score=38.19 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 159 AIKAEAVKQMKYG-KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 159 ~lk~~A~~L~kSg-k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
+|...-+.|..-| ++.+|+-..++..+++. +--.+-..++=.++.+|+|+||-. .++-.+.+ |.|.-.-..+
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNl 241 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDKFG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANL 241 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHH
Confidence 3444444444433 46666666665433221 112233345556677888888887 55544444 6777666777
Q ss_pred HHHHHhhCh--HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM--EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k--~EA~k~we~f~~lv~ 260 (271)
+.++.++|+ ++++++.++-++..|
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 777888888 678888887777766
No 109
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=83.19 E-value=3.5 Score=34.40 Aligned_cols=64 Identities=22% Similarity=0.199 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
....++..+..+|+|++|+. |++..+...-+.+ .-.++-.|.+|.-+++ ++|.+++++-.++.|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 45777888888999999999 6666544310111 2457778999999999 999999998877766
No 110
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.06 E-value=0.5 Score=30.57 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=7.9
Q ss_pred HHHHHHHhcchHHHhh
Q 024174 201 LVEILIYQGKYREALE 216 (271)
Q Consensus 201 lvEilI~qGk~~EAL~ 216 (271)
|+.++.-+|+|++|..
T Consensus 5 Lg~~~~~~g~~~~Ai~ 20 (36)
T PF13176_consen 5 LGRIYRQQGDYEKAIE 20 (36)
T ss_dssp HHHHHHHCT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 4455555555555555
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=82.51 E-value=11 Score=35.82 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHH--HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMA--LVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirml--lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
-..+.-+..+|+.+.....+....... + . +..++ .+.-++-+|+|.+|.. .....--+ |.|.|.+==.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~-~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---P-K--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---c-c--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHH
Confidence 667778888898888877777654322 1 1 22344 7788889999999999 77777666 99999999999
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
+||-=+|. ++|+.-+.+=.+|.|.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC
Confidence 99999999 9999988888888774
No 112
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=82.38 E-value=5.2 Score=32.07 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~ 219 (271)
++.+..++..+...|++++|++.++.++. .+|-++. +-..+++.+..+|+..+|++ |+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~-~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALA---LDPYDEE-AYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HH-HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHH-HHHHHHHHHHHCcCHHHHHHHHHH
Confidence 55688888888899999999999998884 4665544 33456789999999999999 764
No 113
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.00 E-value=11 Score=33.25 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174 153 SAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 153 s~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R 231 (271)
|.+-|+.|..++..=...++.+.+..+|. |+-..+= +.-.+.+.-+.+||.+|+|+||+. ..++.++ ..+
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~-ALrvLRP---~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----~~~ 76 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLD-ALRVLRP---EFPELDLFDGWLHIVRGDWDDALRLLRELEER-----APG 76 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHH-HHHHhCC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCC
Confidence 34668888888888888888888888887 7655532 234578899999999999999998 5576543 356
Q ss_pred chhHHHHH
Q 024174 232 FPFYKAII 239 (271)
Q Consensus 232 ~~L~k~II 239 (271)
.+++||+.
T Consensus 77 ~p~~kALl 84 (160)
T PF09613_consen 77 FPYAKALL 84 (160)
T ss_pred ChHHHHHH
Confidence 67787765
No 114
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=81.67 E-value=5.7 Score=43.24 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=74.9
Q ss_pred CCCCCChhhHHHHH-HHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174 148 VPPGPSAEDVNAIK-AEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE 223 (271)
Q Consensus 148 ~~~~Ps~e~v~~lk-~~A~~L~kSgk~deave~Le~A~eka~~e--~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e 223 (271)
+++.|+....+.-. .+++-|.-- +..+.++-|..-+. +++ +++.-++=+-+++.|+-.|+|.+|++ +..|.+.
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L-~~~e~~e~ll~~l~--~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHL-KERELLEALLHFLV--EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcc-cccchHHHHHHHHH--HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 44455544433322 344444332 33444455544332 334 67777788889999999999999999 6688876
Q ss_pred CCCCCCCC--chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 224 QRIPSDGR--FPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 224 ~~~p~D~R--~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+.+ .++=+|-.|-+|+. |+|.+++|+=-.+.|
T Consensus 444 ---~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 444 ---EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred ---ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 47888 55558999999999 999999999999988
No 115
>PLN03077 Protein ECB2; Provisional
Probab=81.61 E-value=9.1 Score=39.91 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHh-------------------------------h-cCCCcccchHHHHHHHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDC-------------------------------K-NEPEPAYNVEMALVEILIY 207 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka-------------------------------~-~e~eeaynirmllvEilI~ 207 (271)
--.+...+.+.|+.++|++++++..+.- . ........+--.|+.++..
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 4444556777788888888887653210 0 0111222233457788888
Q ss_pred hcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhC--h-HHHHHHHHHHHhhcC
Q 024174 208 QGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLN--M-EEAKKWWEEFAETID 260 (271)
Q Consensus 208 qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~--k-~EA~k~we~f~~lv~ 260 (271)
.|++++|.+ ++++.+.+ ...|-++|..+.. + +||.+.|++-++-+.
T Consensus 437 ~g~~~~A~~vf~~m~~~d-------~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~ 486 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKD-------VISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486 (857)
T ss_pred cCCHHHHHHHHHhCCCCC-------eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 899999998 65665433 2467778766554 4 888888888765444
No 116
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.60 E-value=3.9 Score=25.51 Aligned_cols=31 Identities=26% Similarity=0.183 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhc
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN 189 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~ 189 (271)
.+..+|..+...|++++|.++++++++.+++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 4677888888999999999999999887765
No 117
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.23 E-value=3.8 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 198 EMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
-..+++++..+|+|++|.+ |++...-+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4568999999999999999 66665554
No 118
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=80.68 E-value=20 Score=26.36 Aligned_cols=95 Identities=27% Similarity=0.199 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
.....+..+...+..+.++..+..+... ............++......+++++|.+ +....+.. +.+.....+.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 136 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD--PDPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--CCcchHHHHHH
Confidence 4555555566666666666666655543 1222333334444455555566666666 44444333 33344455555
Q ss_pred H-HHHhhCh-HHHHHHHHHHHh
Q 024174 238 I-IYTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 238 I-IYtmL~k-~EA~k~we~f~~ 257 (271)
. +|.-++. ++|...|++-..
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 137 LGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5 5666666 666666666533
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.25 E-value=6.9 Score=40.32 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCCC---CCC
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQRI---PSD 229 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~~---p~D 229 (271)
....++..+...|+.++|...++.+.+.+++.. ...-..-..+++++..+|++++|.. +.+ +.++... +..
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345566667778888888888888887776532 2222344566778888888888887 333 2222100 111
Q ss_pred CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...+...|.++.-.|. ++|..++++-..+..
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 1223345666666677 888777777655543
No 120
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.14 E-value=4.7 Score=43.22 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHH------------------------------HHHHHHh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMAL------------------------------VEILIYQ 208 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmll------------------------------vEilI~q 208 (271)
+.-.+|.-|..-|+.+||+..-++|+..|-+....-+|+.-.- +-|+--|
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 4567788888889999999999999998877665555543322 2334446
Q ss_pred cchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 209 GKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 209 Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|++++|+. |++-.... |.=+-.+-=-|-.|+-+++ ++|-++.++=.+.-|
T Consensus 402 gnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred ccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 88888888 66555444 5555556666778888888 888888887666555
No 121
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.08 E-value=7.1 Score=39.58 Aligned_cols=82 Identities=20% Similarity=0.156 Sum_probs=61.8
Q ss_pred HHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh
Q 024174 167 QMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM 245 (271)
Q Consensus 167 L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k 245 (271)
+...+++.-|...|+=+.. -+.||+-.+++-|+.-...-|+|+||+. |.-+-.++ --|+..-++-|.-|--|+.
T Consensus 32 fls~rDytGAislLefk~~---~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN---LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHhcccchhHHHHHHHhhc---cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence 4455788888888886551 2356778999999999999999999999 88666555 3566666777777777888
Q ss_pred -HHHHHHHH
Q 024174 246 -EEAKKWWE 253 (271)
Q Consensus 246 -~EA~k~we 253 (271)
+||++-=+
T Consensus 107 Y~eA~~~~~ 115 (557)
T KOG3785|consen 107 YIEAKSIAE 115 (557)
T ss_pred HHHHHHHHh
Confidence 88776543
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=78.54 E-value=6.1 Score=43.16 Aligned_cols=87 Identities=16% Similarity=0.246 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhhhhhhcccCCCCCCCCchhHHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~~~~L~~e~~~p~D~R~~L~k~ 237 (271)
.++-.+|+-..+-|..+++....+++++.-.+++....|+-=.+++. ++++|+++ ..||
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-----dL~KA~~m----------------~~KA 175 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-----DKEKAITY----------------LKKA 175 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-----hHHHHHHH----------------HHHH
Confidence 36889999999999999999988888876555556666655555554 78888752 2222
Q ss_pred HHHHhhCh---HHHHHHHHHHHhhcCCCCCCCC
Q 024174 238 IIYTMLNM---EEAKKWWEEFAETIDDEEFDPT 267 (271)
Q Consensus 238 IIYtmL~k---~EA~k~we~f~~lv~~~~f~~~ 267 (271)
|+...++ .+++++|+++.+..+ ++||.|
T Consensus 176 -V~~~i~~kq~~~~~e~W~k~~~~~~-~d~d~f 206 (906)
T PRK14720 176 -IYRFIKKKQYVGIEEIWSKLVHYNS-DDFDFF 206 (906)
T ss_pred -HHHHHhhhcchHHHHHHHHHHhcCc-ccchHH
Confidence 2233332 888899999998888 777654
No 123
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.54 E-value=59 Score=32.93 Aligned_cols=89 Identities=17% Similarity=0.111 Sum_probs=64.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174 163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT 241 (271)
Q Consensus 163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt 241 (271)
.+.-+---|=+.+|.+.|+.+++ . .+--+-=++|..++..-.+-+.||+ +.+-.|.- |-|.-.-+=+|=||.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~---q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLT---Q--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhh---c--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHH
Confidence 33333333556677788877774 1 2223445788888888899999999 87777554 899888888999999
Q ss_pred hhCh-HHHHHHHHHHHhh
Q 024174 242 MLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 242 mL~k-~EA~k~we~f~~l 258 (271)
-++. ++|-|.++.--++
T Consensus 302 am~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKL 319 (478)
T ss_pred HHHhHHHHHHHHHHHHhc
Confidence 9999 9999887655444
No 124
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=78.18 E-value=25 Score=25.90 Aligned_cols=89 Identities=25% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh
Q 024174 167 QMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM 245 (271)
Q Consensus 167 L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k 245 (271)
+...+..+++.+.+..+++..... .......+...+..+|++++|.+ +....+.. |..+......+.+|...+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGR 251 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCC
Confidence 444455555555555554432221 23333444444445555666665 33333333 3334445555555554444
Q ss_pred -HHHHHHHHHHHhhcC
Q 024174 246 -EEAKKWWEEFAETID 260 (271)
Q Consensus 246 -~EA~k~we~f~~lv~ 260 (271)
++|...+++-.+..+
T Consensus 252 ~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 252 YEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 666666655554443
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=77.92 E-value=17 Score=39.90 Aligned_cols=99 Identities=10% Similarity=0.002 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhhhhhhcccCCCCCCC----
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDG---- 230 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~~~~L~~e~~~p~D~---- 230 (271)
.+++++..++.-....++.++|...++.+++. .| +.-.+-..++=++..++++++|..- .+.+.- +.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P-~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~--~~~~~~~~ 101 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HK-KSISALYISGILSLSRRPLNDSNLL-NLIDSF--SQNLKWAI 101 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-cceehHHHHHHHHHhhcchhhhhhh-hhhhhc--ccccchhH
Confidence 36677888888888899999999999977752 22 2222333333377778888888765 333322 4444
Q ss_pred ---------------CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 231 ---------------RFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 ---------------R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.....|.+|.=++. +||..-|+++.++=|
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~ 147 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR 147 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc
Confidence 678889999999999 999999999988766
No 126
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.75 E-value=13 Score=38.97 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHH--HHhcchHHHhhhh-hhcccCCCCCCC
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEIL--IYQGKYREALECN-CLKDEQRIPSDG 230 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEil--I~qGk~~EAL~~~-~L~~e~~~p~D~ 230 (271)
+++.+.|...|.+++-.++..+..++.+.-+| .+| ++...+.++|. +-.|+..+=.... +||+.- |+-+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle---~dp---fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a 312 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLE---KDP---FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKA 312 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh---hCC---CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCC
Confidence 35577788888888888888888888887775 333 33334444444 3357776666645 788877 9999
Q ss_pred CchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 231 RFPFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 231 R~~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
=+.++=|+-|-|+++ +||..+|-|=-.+
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~l 341 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTL 341 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 999999999999999 9999999774433
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=77.71 E-value=4.1 Score=36.91 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=45.7
Q ss_pred HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch---hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 201 LVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP---FYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 201 lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~---L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
.++-.+-+|+|++|.+ ++++.... |...-.. |.-|-.|--+++ ++|..++++|.++.|.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 4455667899999999 88888766 5442222 566667777888 9999999999999994
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=77.36 E-value=11 Score=38.33 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=46.4
Q ss_pred HHHHHHhcchHHHhh-hhhhcccCCCCCCCC---chhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 202 VEILIYQGKYREALE-CNCLKDEQRIPSDGR---FPFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 202 vEilI~qGk~~EAL~-~~~L~~e~~~p~D~R---~~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
+..|..+|+|+||+. |++-...+ |.|.= .+..+|..|..+++ +||.+++++..++.
T Consensus 82 G~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 82 GLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 445677899999999 77766566 88874 38899999999999 99999999988863
No 129
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.31 E-value=2.5 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 198 EMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
.+.++.++..+|++++|.+ ++++.++-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4567777788899999998 77777654
No 130
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.05 E-value=6.7 Score=35.34 Aligned_cols=63 Identities=19% Similarity=0.090 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhc----C-----CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKN----E-----PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE 223 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~----e-----~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e 223 (271)
..+|=.-...++.+.....|+.|++..++ + +.++..+--+|+|+...-|+++||++ +..+...
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33444445567777777888888665442 2 24556788899999999999999999 7787765
No 131
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=76.04 E-value=17 Score=37.11 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=42.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY 240 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY 240 (271)
.+...+.+.|+.++|.+.+++..+ .....|| .|+.-+...|+++||++ ++++.+....|. ..-|-++|.
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n---~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd---~~T~~~ll~ 434 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPR----KNLISWN---ALIAGYGNHGRGTKAVEMFERMIAEGVAPN---HVTFLAVLS 434 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHH
Confidence 455556667777777777665431 1112232 34455555666666666 445554442222 233444443
Q ss_pred Hhh--Ch-HHHHHHHHHHH
Q 024174 241 TML--NM-EEAKKWWEEFA 256 (271)
Q Consensus 241 tmL--~k-~EA~k~we~f~ 256 (271)
... +. +||.+.|++-.
T Consensus 435 a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHhcCCcHHHHHHHHHHHH
Confidence 333 22 55555555443
No 132
>PRK04841 transcriptional regulator MalT; Provisional
Probab=75.63 E-value=20 Score=37.06 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---c-ccchHHHHHHHHHHhcchHHHhh-hhhhccc--CCCCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---P-AYNVEMALVEILIYQGKYREALE-CNCLKDE--QRIPS 228 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---e-aynirmllvEilI~qGk~~EAL~-~~~L~~e--~~~p~ 228 (271)
.+..+..++..+...|+.++|.+.++++++.++.... . .-.+...+++++..+|++++|.. +.+..+. ...+.
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 3445677788888999999999999999998876421 1 12334567889999999999998 4432221 10011
Q ss_pred -CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 229 -DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 229 -D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
....+...|.++...+. ++|..++++-.++..
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 12334446778888888 999999988876644
No 133
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.15 E-value=3.4 Score=25.44 Aligned_cols=29 Identities=21% Similarity=0.144 Sum_probs=20.9
Q ss_pred chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+...|.+|-.+++ ++|.++|++=.++-|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 45677888888888 888888877766655
No 134
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.60 E-value=13 Score=38.67 Aligned_cols=57 Identities=25% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 202 VEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 202 vEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.=....|+|.+|.+ |.+-++.+ |.|+|.|==.|.-|+-|+. .+|-+.=++=.++-|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 334455699999999 99988888 9999999999999999999 888776665555533
No 135
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=73.83 E-value=27 Score=35.53 Aligned_cols=62 Identities=15% Similarity=-0.001 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.-+++-++.++|++++|.. +++=.+-+ | +.-.|.+.|-+|.+.|+ +||..+.++=.++-|
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345566777788999999998 66555444 6 46789999999999999 999998888777766
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=73.28 E-value=8.9 Score=38.89 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=52.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 164 AVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 164 A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
|+.....|+.++|...+++|++.- +. ...-++++.++.++|+++||.. |++-..-+ |.|-=.|||+-
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~---ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt~~~~~~ 494 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLE---MS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENTLYWIEN 494 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchHHHHHh
Confidence 444556799999999999998643 32 3467889999999999999999 77655555 78777888864
No 137
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=73.17 E-value=24 Score=36.41 Aligned_cols=101 Identities=22% Similarity=0.155 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHH----hcCChhHHHHHHHHHHHHhhcC-----C-----Ccccch----HHHHHHHHHHhcchHHHhhh
Q 024174 156 DVNAIKAEAVKQM----KYGKPEFAVTLLKKVYEDCKNE-----P-----EPAYNV----EMALVEILIYQGKYREALEC 217 (271)
Q Consensus 156 ~v~~lk~~A~~L~----kSgk~deave~Le~A~eka~~e-----~-----eeayni----rmllvEilI~qGk~~EAL~~ 217 (271)
++|+--+.|.+=- ..+++..|.-+...|+|.|.+. + ++..-| +--|+=-+...++-+-||+-
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNH 250 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHH
Confidence 4555444444332 3488999999999999999863 1 222222 23333344446888888882
Q ss_pred h-hhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 218 N-CLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 218 ~-~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
. +=.--| |.-||++|+||++.--|+. .||...+=.+--+
T Consensus 251 ~hrsI~ln--P~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 251 SHRSINLN--PSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HhhhhhcC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 322234 9999999999999999999 9998877655443
No 138
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.49 E-value=31 Score=32.71 Aligned_cols=91 Identities=22% Similarity=0.168 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch-hHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP-FYK 236 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~-L~k 236 (271)
.--.+++.-...|+...|-+-|++|++ .|| .-|.....+|.++..+|+-+-|-+ |..=...+ |.+++.. =|=
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~---~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE---HDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhh
Confidence 456788888999999999999999995 344 456788899999999999888887 66544444 6776642 244
Q ss_pred HHHHHhhCh-HHHHHHHHHHH
Q 024174 237 AIIYTMLNM-EEAKKWWEEFA 256 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~ 256 (271)
++.+.-. + +||.+||++=.
T Consensus 111 ~FLC~qg-~~~eA~q~F~~Al 130 (250)
T COG3063 111 AFLCAQG-RPEEAMQQFERAL 130 (250)
T ss_pred HHHHhCC-ChHHHHHHHHHHH
Confidence 4444444 6 99999998643
No 139
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.46 E-value=2.8 Score=25.83 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcchHHHhh-hhh
Q 024174 199 MALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 199 mllvEilI~qGk~~EAL~-~~~ 219 (271)
..++.++..+|+|++|++ |++
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHH
Confidence 346777777888888887 554
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=71.89 E-value=6.8 Score=34.43 Aligned_cols=58 Identities=12% Similarity=-0.079 Sum_probs=49.3
Q ss_pred HHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 201 LVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 201 lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
++=-+.-+|+|++|.+ ++-|..-+ |.+++.++==|.+|..+++ ++|-..+..=-.+-|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ 100 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI 100 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4445677899999999 66566557 8999999999999999999 999999988777776
No 141
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.57 E-value=13 Score=35.50 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN 218 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~ 218 (271)
|...+-+|-+++...++..+++... |..|..+ .-|-.+.|+|++.|+|++|+. |+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qV---kakPtda-~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQV---KAKPTDA-GGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHH---hcCCccc-cchhHHHHHHhhcchHHHHHHHHH
Confidence 5567778899999998888887766 4566554 568899999999999999998 44
No 142
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.28 E-value=21 Score=27.92 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 177 VTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 177 ve~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
+..|+.+++ .+|.+. +.+..+++.++..|+|++|+. .-.++..+
T Consensus 8 ~~al~~~~a---~~P~D~-~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALA---ANPDDL-DARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHH---HSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHH---cCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344554543 445544 788899999999999999998 66777776
No 143
>PLN03077 Protein ECB2; Provisional
Probab=68.06 E-value=30 Score=36.20 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=55.5
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhh------------------------
Q 024174 166 KQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCL------------------------ 220 (271)
Q Consensus 166 ~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L------------------------ 220 (271)
...++|..++|.++++...+...-+|. ...--.|+.++...|+++||.+ ++++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 466678888888887766543322332 1222456677777777777776 4443
Q ss_pred --------cccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174 221 --------KDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 221 --------~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~ 257 (271)
.+- -|.|.-.|..-+-||.-.|+ +||.+.++.-++
T Consensus 676 ~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 676 GELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 211 26777777777777777777 888777776654
No 144
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.62 E-value=42 Score=29.73 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
.+-|+.|...+..=--.++.+.+..+|. |+-..+=+ ...+.|.-+=++|..|+|+||+. ..+|.++. ...
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLd-ALrvLrP~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-----~~~ 77 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLD-ALRVLRPN---LKELDMFDGWLLIARGNYDEAARILRELLSSA-----GAP 77 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHhCCC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccC-----CCc
Confidence 3445555554444444788888888887 77655433 23467778889999999999998 44666332 366
Q ss_pred hhHHHHHH
Q 024174 233 PFYKAIIY 240 (271)
Q Consensus 233 ~L~k~IIY 240 (271)
+++||+.-
T Consensus 78 p~~kAL~A 85 (153)
T TIGR02561 78 PYGKALLA 85 (153)
T ss_pred hHHHHHHH
Confidence 88887653
No 145
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=66.17 E-value=13 Score=32.21 Aligned_cols=61 Identities=25% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHHHHhcchHHHhh-hhhhcccCCCCCCC---CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174 200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDG---RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDE 262 (271)
Q Consensus 200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~---R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~ 262 (271)
-.++-++.+|+|++|.+ ++.|.+.- |..- .--|.-|-.|-..++ ++|...+++|.+..|..
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 35667788999999999 77888764 4432 234667777888888 99999999999999943
No 146
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.95 E-value=6.4 Score=41.44 Aligned_cols=70 Identities=24% Similarity=0.323 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHH----------HHHh----hcC-C-----------CcccchHHHHHHHHHHh
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKV----------YEDC----KNE-P-----------EPAYNVEMALVEILIYQ 208 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A----------~eka----~~e-~-----------eeaynirmllvEilI~q 208 (271)
++.++|+--++-|..-+++++|++.++.. +|++ +-+ . ..-..+.-+=+|++..+
T Consensus 44 dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 44 DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRL 123 (652)
T ss_pred CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 45667787788888888888888766543 1332 221 1 12235778889999999
Q ss_pred cchHHHhh-hhhhcccC
Q 024174 209 GKYREALE-CNCLKDEQ 224 (271)
Q Consensus 209 Gk~~EAL~-~~~L~~e~ 224 (271)
|+|+||+. |+.|.+.+
T Consensus 124 ~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 124 ERYDEALDIYQHLAKNN 140 (652)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999 99996654
No 147
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=65.23 E-value=18 Score=23.20 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhc
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKN 189 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~ 189 (271)
+..++.-....|++++|+++.+++++.+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 567888899999999999999998866644
No 148
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=65.15 E-value=42 Score=32.29 Aligned_cols=81 Identities=21% Similarity=0.104 Sum_probs=58.0
Q ss_pred HHHHHHHHHhc---CChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhhhh-hhcccCCCCCCCCchhH
Q 024174 160 IKAEAVKQMKY---GKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECN-CLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 160 lk~~A~~L~kS---gk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~~~-~L~~e~~~p~D~R~~L~ 235 (271)
+-+.|-.|+-+ ....++-++|++|+. .|+.+ -..+.+|+--.+-+|+|.+|...+ -|.+-. .|.|-|+.+-
T Consensus 193 ~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~~~rr~~i 267 (287)
T COG4235 193 LLGLAEALYYQAGQQMTAKARALLRQALA---LDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCCCchHHHH
Confidence 44444444443 344567788887774 34433 345788999999999999999955 566554 4889999999
Q ss_pred HHHHHHhhCh
Q 024174 236 KAIIYTMLNM 245 (271)
Q Consensus 236 k~IIYtmL~k 245 (271)
+.+|-.-...
T Consensus 268 e~~ia~~~~~ 277 (287)
T COG4235 268 ERSIARALAQ 277 (287)
T ss_pred HHHHHHHHhc
Confidence 9999887766
No 149
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=64.99 E-value=19 Score=31.25 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHh--hCh-H
Q 024174 173 PEFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTM--LNM-E 246 (271)
Q Consensus 173 ~deave~Le~A~eka~~e--~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtm--L~k-~ 246 (271)
-++-++.|+.-++.++++ .++.|...+.+++.+.--|++++|++ |....+.- .-..-+.-+|-.+|-.- ++. +
T Consensus 12 ~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 12 NAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 356678888888888876 47888999999999999999999999 77765553 12334444444444333 333 6
Q ss_pred HHHHHHHHHHhhcC
Q 024174 247 EAKKWWEEFAETID 260 (271)
Q Consensus 247 EA~k~we~f~~lv~ 260 (271)
.+.++=++-..+..
T Consensus 91 ~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 91 HVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665555
No 150
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.99 E-value=23 Score=28.27 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHH--HHHHHHHHhcchHHHhhhh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEM--ALVEILIYQGKYREALECN 218 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirm--llvEilI~qGk~~EAL~~~ 218 (271)
.-...-++|=.+.+.++|+.+-+.++++..+-+. -++. .+++.|+-.|+|+++|.|.
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~---rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDRED---RFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677889999999999999988655332 3333 4789999999999999965
No 151
>PF13041 PPR_2: PPR repeat family
Probab=64.97 E-value=13 Score=25.01 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHh
Q 024174 200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTM 242 (271)
Q Consensus 200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtm 242 (271)
.|+..++.+|++++|.+ ++++.+.+..| ..+-|..+|..+
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~g~~P---~~~Ty~~li~~~ 48 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKRGIKP---DSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Confidence 35677788899999998 77888776433 244555555443
No 152
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=64.88 E-value=21 Score=37.03 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CcccchHHHHHHHHHHhcchHHHhh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-EPAYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~-eeaynirmllvEilI~qGk~~EAL~ 216 (271)
.+...-.+||-+.+-|+.+||+++..+-++ +.| .+..+|+=.|+|-|.-++.|.|+-+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlk---e~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLK---EFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHh---hCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 467788999999999999999999998774 334 5799999999999999999999977
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=64.66 E-value=49 Score=34.12 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII 239 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II 239 (271)
.+.|+.-.--|+.|+|.+.|..-+ ++.|. ..++.-+.+||++-.++..||.+ ++..++.. |--.=..+-.|..
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~---~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~a 383 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLI---AAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHH---HhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHH
Confidence 345555555667777777777633 34454 44566678999999999999999 66677655 5443344567888
Q ss_pred HHhhCh-HHHHHHHHHHHhhcC
Q 024174 240 YTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 240 YtmL~k-~EA~k~we~f~~lv~ 260 (271)
|--+++ +||.+.-+.|..-.|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCC
Confidence 888899 999999888877666
No 154
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=64.33 E-value=67 Score=32.45 Aligned_cols=93 Identities=18% Similarity=0.077 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC----------------------------CCcccchHHHHHHHHHHhcc
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE----------------------------PEPAYNVEMALVEILIYQGK 210 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e----------------------------~eeaynirmllvEilI~qGk 210 (271)
-.-..|.++...|.+|+|++++++++++-..+ |+ -.++=+.|.+..+.++.
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhH
Confidence 46678999999999999999999998653211 22 22666777888888888
Q ss_pred hHHHhhhhh--hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHH
Q 024174 211 YREALECNC--LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFA 256 (271)
Q Consensus 211 ~~EAL~~~~--L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~ 256 (271)
|.+|..+-+ |. . -.++--+.+-|=.|-=+++ ++|.++.++=-
T Consensus 344 w~kA~~~leaAl~-~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 344 WGKASEALEAALK-L---RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHHh-c---CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 888877443 22 1 2445557777777777888 88888877643
No 155
>PLN02789 farnesyltranstransferase
Probab=64.21 E-value=58 Score=31.00 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=9.1
Q ss_pred cCChhHHHHHHHHHHH
Q 024174 170 YGKPEFAVTLLKKVYE 185 (271)
Q Consensus 170 Sgk~deave~Le~A~e 185 (271)
.+..++|++...++++
T Consensus 50 ~e~serAL~lt~~aI~ 65 (320)
T PLN02789 50 DERSPRALDLTADVIR 65 (320)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3455666666665554
No 156
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.76 E-value=17 Score=28.47 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKY 211 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~ 211 (271)
+|+++...+|..++..|++++|++.|-..+..-+.. +.-..|-.|+++.-.-|.=
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~--~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDY--EDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC--CCCHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--cccHHHHHHHHHHHHcCCC
Confidence 588999999999999999999999998888543332 2333455555655555543
No 157
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=61.82 E-value=16 Score=19.44 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=13.5
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
+...|++|--+++ ++|..+|++-.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3445555555555 5555555544433
No 158
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=61.59 E-value=3.7 Score=26.54 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=16.4
Q ss_pred CCCCCchhHHHHHHHhhCh-HHHH
Q 024174 227 PSDGRFPFYKAIIYTMLNM-EEAK 249 (271)
Q Consensus 227 p~D~R~~L~k~IIYtmL~k-~EA~ 249 (271)
|.|...+..-|.+|...|. ++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 7777777777777777777 6665
No 159
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.04 E-value=27 Score=38.04 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=66.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---cccchHHHHHHHHHHhcchHHHhh-hhhhcccCC------------
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---PAYNVEMALVEILIYQGKYREALE-CNCLKDEQR------------ 225 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~e---eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~------------ 225 (271)
.+..-|++.++++||.++.+... +.. .--.+...++.=|+..|+|++|.. |..+..++.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~-----~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASI-----GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE 435 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhcc-----CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc
Confidence 44555777888998888776322 222 245677788888899999999998 888777651
Q ss_pred ----------CCCC---CCchhHHHHHHHhhChHHHHHHHHHHHhhcCC
Q 024174 226 ----------IPSD---GRFPFYKAIIYTMLNMEEAKKWWEEFAETIDD 261 (271)
Q Consensus 226 ----------~p~D---~R~~L~k~IIYtmL~k~EA~k~we~f~~lv~~ 261 (271)
+|++ -+|-.|+.+++..|-. =.+.|.+|++..|.
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~~--~~~~F~e~i~~Wp~ 482 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLAS--DVKGFLELIKEWPG 482 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHHH--HHHHHHHHHHhCCh
Confidence 3443 5788999999999874 33567777776663
No 160
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=60.94 E-value=10 Score=23.01 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhcchHHHhh
Q 024174 197 VEMALVEILIYQGKYREALE 216 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~ 216 (271)
....+++.+.-+|+++||..
T Consensus 3 a~~~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 35677888888888888875
No 161
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=60.58 E-value=40 Score=32.10 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
++....-+-..|...+|+..+.+|......|. .+.++++=+|.-.|++++|-. |-+..+ +.|.+..+.===|+
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~----~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgm 176 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW----EAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGM 176 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCCh----hhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHH
Confidence 33355555666777777777777764332222 345666666666777777776 554432 22555555555566
Q ss_pred HHHhhCh-HHHHHHHHHH
Q 024174 239 IYTMLNM-EEAKKWWEEF 255 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f 255 (271)
+|-+=|+ +.|+.....=
T Consensus 177 s~~L~gd~~~A~~lll~a 194 (257)
T COG5010 177 SLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 6666666 6666665543
No 162
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.36 E-value=1.1e+02 Score=29.76 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
|...-..++++..+..|..+.|.+-++.--..- |. -+-|..+-+=.|=..|.|+||.. |..|..++ |.|+=+|
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~ 123 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIR 123 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHH
Confidence 455667778888888888777776665322111 22 23344444445555799999999 88888888 9999888
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
==|-+|--=.|| .||=+--++|-+..+
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~ 151 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFM 151 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 888888888888 888887777776655
No 163
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=59.93 E-value=84 Score=29.84 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCC-CCCCCc
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRI-PSDGRF 232 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~-p~D~R~ 232 (271)
++.|=..+......|+.++|++.++... ++.| +-.+.+++.++.-++..|+|++|+. .+++....-. |.=.=.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~---~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALD---SRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3457777888889999999999999444 3443 5568999999999999999999999 4454433200 111223
Q ss_pred hhHHHHHHHhh----Ch--HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTML----NM--EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL----~k--~EA~k~we~f~~lv~ 260 (271)
+-.||++|-.. ++ ..+++-++.|++++.
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ 144 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ 144 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH
Confidence 34477776543 22 666677777776665
No 164
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.54 E-value=22 Score=36.54 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~-eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
.++..|...-+-.+.+.|+.+=-+|+++ ++ -..|+--= ++-++..|.|.+|+. +..+.+.+ |+=.|.|+.+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anR--a~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rr 78 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANR--ALAHLKVESFGGALHDALKAIELD--PTYIKAYVRR 78 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhc---CCcceeeechh--hhhheeechhhhHHHHHHhhhhcC--chhhheeeec
Confidence 4778888888999999999998888864 33 22222222 256778899999997 66666666 9999999999
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
|--+.-|++ .+|..-+++-..+.|.
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence 999999999 9999999999888884
No 165
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.38 E-value=15 Score=33.18 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh
Q 024174 173 PEFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM 245 (271)
Q Consensus 173 ~deave~Le~A~eka~~e--~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k 245 (271)
-..+++.|++|++-.++- .--...+...||+-++..|+|++|++ ++.+. .++|.-=|-.|...+|..
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~------~~yr~egW~~l~~~~l~~ 223 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA------SSYRREGWWSLLTEVLWR 223 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHHHhCCcHHHHHHHHHH
Confidence 346789999998887764 56778899999999999999999999 44442 233433344555555544
No 166
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=57.26 E-value=9.8 Score=39.30 Aligned_cols=111 Identities=21% Similarity=0.308 Sum_probs=71.6
Q ss_pred HHHHhHhhcccccccChhhhhcCCch-hh---cc----CCCccccccccCcchhhhh---------hhhhhhh--hhhcC
Q 024174 77 VLTCALGIMSFSSRMNPKAIAAGPME-MY---QK----APRMSVLPHPIGGRYALNS---------FLDVSVR--LASSK 137 (271)
Q Consensus 77 aL~C~Lgiig~s~~mn~ka~aA~p~~-~~---~~----~~~~s~~~~p~gg~~Al~s---------lld~~~~--la~t~ 137 (271)
=|||+|+=||++-+.-|- -|.+ .+ ++ ||-+=.+-.+++-+.||++ |||+.|| .+++.
T Consensus 352 DlTccIaDFGLAl~~~p~----~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~ 427 (534)
T KOG3653|consen 352 DLTCCIADFGLALRLEPG----KPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPG 427 (534)
T ss_pred CCcEEeeccceeEEecCC----CCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 378999999999885531 1211 11 23 5666666677887888887 7999998 56655
Q ss_pred CCCCCCCCC--CCCCCCChhhHHHHHHHHHHHHhc-------CChhHHHHHHHHHHHHhhcCCCccc
Q 024174 138 AEPFYWPRY--TVPPGPSAEDVNAIKAEAVKQMKY-------GKPEFAVTLLKKVYEDCKNEPEPAY 195 (271)
Q Consensus 138 ~~~~~~~~~--~~~~~Ps~e~v~~lk~~A~~L~kS-------gk~deave~Le~A~eka~~e~eeay 195 (271)
+.+.+-.+| .+..+||-| .+|.++++-..+ ++. .+..+|.+.+|-|=....|||
T Consensus 428 ~vp~Yqlpfe~evG~hPt~e---~mq~~VV~kK~RP~~p~~W~~h-~~~~~l~et~EeCWDhDaeAR 490 (534)
T KOG3653|consen 428 PVPEYQLPFEAEVGNHPTLE---EMQELVVRKKQRPKIPDAWRKH-AGMAVLCETIEECWDHDAEAR 490 (534)
T ss_pred CCCcccCchhHHhcCCCCHH---HHHHHHHhhccCCCChhhhhcC-ccHHHHHHHHHHHcCCchhhh
Confidence 555554444 355677744 466666665555 333 788999999998865443443
No 167
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=54.96 E-value=22 Score=35.54 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC----CchhH
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG----RFPFY 235 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~----R~~L~ 235 (271)
=.+|...+-+.+.|.|.+.|++|++ .+++-+| .-|.++.+.+-+|+|+.|.+ ++....+| .|+ =+.|+
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvR-Asi~lG~v~~~~g~y~~AV~~~e~v~eQn---~~yl~evl~~L~ 256 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQ---ADKKCVR-ASIILGRVELAKGDYQKAVEALERVLEQN---PEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHh---hCcccee-hhhhhhHHHHhccchHHHHHHHHHHHHhC---hHHHHHHHHHHH
Confidence 4688889999999999999999995 4455444 56889999999999999999 66666666 221 12233
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
. -|.=||+ +|...+--.+.+..+
T Consensus 257 ~--~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 257 E--CYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred H--HHHHhCCHHHHHHHHHHHHHccC
Confidence 2 3667777 777666666655443
No 168
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.59 E-value=25 Score=33.37 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 191 PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 191 ~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
..++.++++.++==++-+|++..|.+ .+.-...+ |++-+.++--|.||.=++. |-|.+.+++=..+-|.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 35667778888777788999999998 66655556 9999999999999999999 9999988887777664
No 169
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.39 E-value=17 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=16.8
Q ss_pred HHHHHHHhcchHHHhh-hhhhcccCC
Q 024174 201 LVEILIYQGKYREALE-CNCLKDEQR 225 (271)
Q Consensus 201 lvEilI~qGk~~EAL~-~~~L~~e~~ 225 (271)
|+.-++..|++++|.+ +.++.....
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 4556667788888887 666665553
No 170
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.18 E-value=9.8 Score=37.88 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=60.6
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174 146 YTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDE 223 (271)
Q Consensus 146 ~~~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e 223 (271)
+.++-.||+-+-+-+..++-.+-+.|.+++||+..+.|.+.--=+|--+|||-++ |..+|+|.-||+ .+++++-
T Consensus 133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa----Hy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA----HYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH----HHhhhhHHHHHHHHHHHHHh
Confidence 3466678877788888999999999999999999999998765567788887554 677899999999 6687754
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=52.05 E-value=28 Score=30.98 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=42.8
Q ss_pred HHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCCCCC
Q 024174 205 LIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDEEFDPT 267 (271)
Q Consensus 205 lI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~~~ 267 (271)
+..+|+|+||.+ ++=|.--+ |-+.|..+==|-.|.++++ ++|-..+-- --+.+++++.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~-A~~l~~~dp~p~ 108 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAV-AFTLLKNDYRPV 108 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcccCCCCcc
Confidence 456899999999 55333335 6788877778899999999 999888753 333444655553
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.59 E-value=1.1e+02 Score=30.91 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC----CCcccchHHH-------HHHHHHHhcchHHHhh-hhhhcccCC
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE----PEPAYNVEMA-------LVEILIYQGKYREALE-CNCLKDEQR 225 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e----~eeaynirml-------lvEilI~qGk~~EAL~-~~~L~~e~~ 225 (271)
+.+|.....+-+.|++..|..+-+.|......+ +++...+.=+ |+=.++-..+|.+|++ |......+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~- 287 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD- 287 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-
Confidence 347777888888999999998887776554432 2333322211 2334455689999999 77655444
Q ss_pred CCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 226 IPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 226 ~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.-...-+=+|=+|-.++. +.|..-|++=.++-|
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 5666666678999999999 999999999888877
No 173
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.36 E-value=43 Score=36.66 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhhcCCCcccchH-HHHHHHHHHhcchHHHhhhhhhcccCCCCCCCCchhHHHHHHHhhCh--HHHHH
Q 024174 174 EFAVTLLKKVYEDCKNEPEPAYNVE-MALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKAIIYTMLNM--EEAKK 250 (271)
Q Consensus 174 deave~Le~A~eka~~e~eeaynir-mllvEilI~qGk~~EAL~~~~L~~e~~~p~D~R~~L~k~IIYtmL~k--~EA~k 250 (271)
...+..+|.-|| .+.=+++..- |++-.++.+-|+|++|++|.==-++. +--|.+-..+-.|||-+.|+ ++|-+
T Consensus 40 sd~l~~IE~lye---d~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~-F~Vd~~S~y~etivak~id~yi~~~~~ 115 (929)
T KOG2062|consen 40 SDSLPKIESLYE---DETFPERQLAALLASKVYYYLGEYEDALEYALRAGDD-FDVDENSDYVETIVAKCIDMYIETASE 115 (929)
T ss_pred hhhHHHHHHHhc---cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-ccccCccchhhHHHHHHHHHHHHHHHH
Confidence 344455554443 2223355555 88889999999999999986211111 12344556788999999999 77777
Q ss_pred HHH
Q 024174 251 WWE 253 (271)
Q Consensus 251 ~we 253 (271)
..+
T Consensus 116 ~~~ 118 (929)
T KOG2062|consen 116 TYK 118 (929)
T ss_pred Hhc
Confidence 666
No 174
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.06 E-value=61 Score=32.46 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e--~eeaynirmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
..+-..+......+.++|++.|++-.++.++. |.+.-++...++..+...|+++++-+ ..++.+
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35556666677778899999999999988765 55888888888888888999999998 666655
No 175
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=48.86 E-value=63 Score=29.73 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=57.7
Q ss_pred cCcchhhhhhhhhhhhhhhcCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccc
Q 024174 117 IGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYN 196 (271)
Q Consensus 117 ~gg~~Al~slld~~~~la~t~~~~~~~~~~~~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeayn 196 (271)
+|-..|+++||..- -.|..++....-.+|-.-.++ +.+++...|-.+++....+..--.+
T Consensus 120 ~~d~~A~~~fL~~E-------------------~~~~l~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~~~n~e 179 (203)
T PF11207_consen 120 FGDQEALRRFLQLE-------------------GTPELETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDDNFNPE 179 (203)
T ss_pred cCcHHHHHHHHHHc-------------------CCCCCCCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCCCCCHH
Confidence 47888888888733 223334555566677766644 5699999999999988666556667
Q ss_pred hHHHHHHHHHHhcchHHHh
Q 024174 197 VEMALVEILIYQGKYREAL 215 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL 215 (271)
|=+-||=+..-+|+|++|=
T Consensus 180 il~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 180 ILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHhcchhhhh
Confidence 7777888888899999873
No 176
>PLN02789 farnesyltranstransferase
Probab=48.15 E-value=1e+02 Score=29.43 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=15.7
Q ss_pred cchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174 209 GKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT 241 (271)
Q Consensus 209 Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt 241 (271)
|+|++|+. |+++.+.+ |++.-.+-+++.|..
T Consensus 156 ~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 156 GGWEDELEYCHQLLEED--VRNNSAWNQRYFVIT 187 (320)
T ss_pred hhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHH
Confidence 44555555 44455444 555555555554443
No 177
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=47.80 E-value=24 Score=37.67 Aligned_cols=108 Identities=30% Similarity=0.340 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-C--CcccchHHHH--HHHHHHhcchHHHhhhhhhcccCCC-CCCCC
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-P--EPAYNVEMAL--VEILIYQGKYREALECNCLKDEQRI-PSDGR 231 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~--eeaynirmll--vEilI~qGk~~EAL~~~~L~~e~~~-p~D~R 231 (271)
-.--+.|+--+-.|.+..|.++|+ ++++-.+. + ++-..-++++ .++++-.|.+++|++ -|.+.+-. -..+-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~-ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale--~L~~~e~~i~Dkla 220 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILE-EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE--HLLDNEKQIVDKLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH--HHHhhhhHHHHHHH
Confidence 345677888888999999999999 56554433 2 3333333444 455556799999996 22222100 11133
Q ss_pred chhHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCCCCCCC
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWWEEFAETIDDEEFDPTKG 269 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~~~~~ 269 (271)
.-.=+|-++.=|+. |||..-|..+..-.| +.++=+++
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~ 258 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEG 258 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHH
Confidence 44557889999999 999999999999999 66665444
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=46.88 E-value=46 Score=34.17 Aligned_cols=95 Identities=21% Similarity=0.163 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccchHHHH--HHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYNVEMAL--VEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~e-eaynirmll--vEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
+.-...+-+.|.+.+|.|.-.+|+. -+|+ -.-|..+.+ +-+.+--|+.+||+. |..-.+-+ ++=-..+|=+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~---idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~r 327 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALN---IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRR 327 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhc---CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHH
Confidence 3444555667777777776666663 2342 333444443 334455799999998 88655554 5556788888
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|--|-.|++ +||-+.+++=.++--
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999 999999988766543
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=46.85 E-value=17 Score=21.23 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=16.3
Q ss_pred HHHHHHHHhcchHHHhh-hhhhccc
Q 024174 200 ALVEILIYQGKYREALE-CNCLKDE 223 (271)
Q Consensus 200 llvEilI~qGk~~EAL~-~~~L~~e 223 (271)
.|++.+...|++++|.+ ++++.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHhHC
Confidence 35667777788888877 6666543
No 180
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=46.17 E-value=35 Score=22.50 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDC 187 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka 187 (271)
....+|..+...|+.++|.+.++.+++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35678899999999999999999999644
No 181
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.62 E-value=14 Score=38.53 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=58.3
Q ss_pred hcCChhHHHHHHHHHHHHhhcC---CCcccchHHHHHHHHHHhcchHHHhhhh-hhcccCCCCCCCCchhHH-HHHHHhh
Q 024174 169 KYGKPEFAVTLLKKVYEDCKNE---PEPAYNVEMALVEILIYQGKYREALECN-CLKDEQRIPSDGRFPFYK-AIIYTML 243 (271)
Q Consensus 169 kSgk~deave~Le~A~eka~~e---~eeaynirmllvEilI~qGk~~EAL~~~-~L~~e~~~p~D~R~~L~k-~IIYtmL 243 (271)
..|++|+|.+--++|+ +++ .+..+||.+-- --+|+++|||.|. .|-.. ...----||| |=||.+|
T Consensus 502 ~ngd~dka~~~ykeal---~ndasc~ealfniglt~----e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEAL---NNDASCTEALFNIGLTA----EALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELL 571 (840)
T ss_pred ecCcHHHHHHHHHHHH---cCchHHHHHHHHhcccH----HHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHh
Confidence 3478888888888777 344 57888888642 3479999999866 33221 1111234666 6799999
Q ss_pred Ch-HHHHHHHHHHHhhcCC
Q 024174 244 NM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 244 ~k-~EA~k~we~f~~lv~~ 261 (271)
+. ..|-+|.-.-..++|-
T Consensus 572 ed~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLIPN 590 (840)
T ss_pred hCHHHHHHHHHHhcccCCC
Confidence 99 9999998888888883
No 182
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.30 E-value=45 Score=25.63 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEI 204 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEi 204 (271)
..++-..|..-..-|..++|++.|++|+..+++.. .-....-+.++++
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l 90 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANL 90 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 33466677777788999999999999999998753 3444444444443
No 183
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=45.26 E-value=25 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHhcchHHHhh-hh-hh
Q 024174 196 NVEMALVEILIYQGKYREALE-CN-CL 220 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~-~L 220 (271)
++-++|+||-+-.++|+.|.. |+ ||
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 355789999999999999998 66 44
No 184
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.90 E-value=16 Score=31.24 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=16.9
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcCCCCC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETIDDEEF 264 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~~~~f 264 (271)
++++..+|+ +||+++-++.+.+.|.++|
T Consensus 151 a~~l~~~G~~~eA~~~~~~~~~lyP~~~~ 179 (193)
T PF11846_consen 151 ALALALLGDPEEARQWLARARRLYPADEF 179 (193)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCcHHH
Confidence 556666666 6666666666666664433
No 185
>PRK10941 hypothetical protein; Provisional
Probab=44.21 E-value=50 Score=31.02 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=45.6
Q ss_pred HHHHHHhcchHHHhhhhh-hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 202 VEILIYQGKYREALECNC-LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 202 vEilI~qGk~~EAL~~~~-L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
-.+++-+++|+.||+|.+ +.--. |.|.--.-=.|+||.=||- ..|..=.|-|.+.+|.
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 355677899999999774 44333 7776555557999999999 9999999999999983
No 186
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=43.89 E-value=91 Score=25.20 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=35.5
Q ss_pred HHhcCChhHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHhcchHHHhhhh
Q 024174 167 QMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVEMALVEILIYQGKYREALECN 218 (271)
Q Consensus 167 L~kSgk~deave~Le~A~eka~~e-~eeaynirmllvEilI~qGk~~EAL~~~ 218 (271)
....|+.++|.+.++..+....+. +.=+++++..=.==++..|+..||++|-
T Consensus 11 ~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~ 63 (145)
T PF10607_consen 11 AILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYA 63 (145)
T ss_pred HHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 347899999999999988777655 3334444433222233479999999965
No 187
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=41.17 E-value=90 Score=34.61 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=58.2
Q ss_pred hcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhhhh-hhcccCCCCCCCCchhHHHHHHHhhCh-H
Q 024174 169 KYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECN-CLKDEQRIPSDGRFPFYKAIIYTMLNM-E 246 (271)
Q Consensus 169 kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~~~-~L~~e~~~p~D~R~~L~k~IIYtmL~k-~ 246 (271)
.|+....|+.-+.+-+++ .|.. -+.+.+=+=+|+.+|+++||+.|= .+...- +.|-+.-=.=-++|.=+++ |
T Consensus 21 d~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhh
Confidence 344444454444444432 2322 234555566788899999999744 344333 6677766666678999999 9
Q ss_pred HHHHHHHHHHhhcCC
Q 024174 247 EAKKWWEEFAETIDD 261 (271)
Q Consensus 247 EA~k~we~f~~lv~~ 261 (271)
||=.+||.+.+..|.
T Consensus 95 ~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHHhhCCc
Confidence 999999999998885
No 188
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.81 E-value=2e+02 Score=26.46 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHhcchHHHhhhhh-----------
Q 024174 153 SAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQGKYREALECNC----------- 219 (271)
Q Consensus 153 s~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e--~eeaynirmllvEilI~qGk~~EAL~~~~----------- 219 (271)
+.+.+++|..+...+-.+. .+-.+.++.|++-.+.. +.-..++.-.+++++...|+|.+|..+-=
T Consensus 48 ~~~~~~rl~~l~~~~~~~~--p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~ 125 (260)
T PF04190_consen 48 DEESIARLIELISLFPPEE--PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYV 125 (260)
T ss_dssp SHHHHHHHHHHHHHS-TT---TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHH
Confidence 4455666666555543332 23567788888777332 44556888899999998888888876221
Q ss_pred -hccc---CCCCCCCCchhHHHHHHHhh-Ch-HHHHHHHHHHHhh
Q 024174 220 -LKDE---QRIPSDGRFPFYKAIIYTML-NM-EEAKKWWEEFAET 258 (271)
Q Consensus 220 -L~~e---~~~p~D~R~~L~k~IIYtmL-~k-~EA~k~we~f~~l 258 (271)
+..+ .--|++.=.|+-+||+-.|. ++ +-|.+.++.|.+.
T Consensus 126 ~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 126 MLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1111 01377778899999887776 55 8999999999987
No 189
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.81 E-value=53 Score=31.88 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=49.5
Q ss_pred hcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhh---hccc-CCCCCCCCchhHHHHHHH
Q 024174 169 KYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNC---LKDE-QRIPSDGRFPFYKAIIYT 241 (271)
Q Consensus 169 kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e-~~~p~D~R~~L~k~IIYt 241 (271)
++-++++|+.+-+.+.+..+++. +-++++==...-+||.-.+|+||.+ ... ++++ +..++-.|.|+=+-|+|-
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 34445555555555555554442 2333333345667888888999887 432 2332 112455566666666666
Q ss_pred hhCh-HHHHHHHHH
Q 024174 242 MLNM-EEAKKWWEE 254 (271)
Q Consensus 242 mL~k-~EA~k~we~ 254 (271)
=+.. .-||+++++
T Consensus 202 ~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRD 215 (308)
T ss_pred hHHHHHHHHHHhcc
Confidence 6666 888888765
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=37.48 E-value=2.9e+02 Score=25.37 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC-CchhHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG-RFPFYKA 237 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~-R~~L~k~ 237 (271)
+....++..-.++.+.|.++.|.++++..++ .++=+..+.+|+..|+.+.|.. ++..+.. ++.+. ...||+.
T Consensus 39 ~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~ 112 (280)
T PF05843_consen 39 VAYALMEYYCNKDPKRARKIFERGLKKFPSD----PDFWLEYLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKK 112 (280)
T ss_dssp HHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 4555566666788777999999999877544 3566778899999999999998 7755543 37777 8888888
Q ss_pred HHH--HhhCh-HHHHHHHHHHHhhcCC
Q 024174 238 IIY--TMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 238 IIY--tmL~k-~EA~k~we~f~~lv~~ 261 (271)
.|- .-.|. +-+.+.-+++.+++|.
T Consensus 113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 113 FIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 773 12234 6666777777777774
No 191
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.42 E-value=98 Score=26.40 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=16.6
Q ss_pred cccchHHHHHHHHHHhcchHHHhh
Q 024174 193 PAYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 193 eaynirmllvEilI~qGk~~EAL~ 216 (271)
.+--|.|.-+=.|+.||+|++||.
T Consensus 38 ~~E~v~lIr~~sLmNrG~Yq~ALl 61 (116)
T PF09477_consen 38 MEEVVALIRLSSLMNRGDYQEALL 61 (116)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455555667889999999986
No 192
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.23 E-value=83 Score=34.38 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCcccc---hHHH---HHHHHHHhcchHHHhhhhhhcccCCCCCCC
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAYN---VEMA---LVEILIYQGKYREALECNCLKDEQRIPSDG 230 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e--~eeayn---irml---lvEilI~qGk~~EAL~~~~L~~e~~~p~D~ 230 (271)
+|+..|..-.++...+-..|.+++.++..+-. -+..+. +.|- .+.-+|.-|+-.+|-+ |..+ +..+|.
T Consensus 640 ~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~q---l~~~-FkipdK 715 (829)
T KOG2280|consen 640 ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQ---LKSD-FKIPDK 715 (829)
T ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHH---HHHh-cCCcch
Confidence 58888888888887777777777776654422 233332 2222 2445666788888875 2222 237899
Q ss_pred CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCCCCCCCCC
Q 024174 231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDDEEFDPTK 268 (271)
Q Consensus 231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~~~f~~~~ 268 (271)
|.+..|.-=-.=.+| +|-+| |-+=|+- | .+|.||-
T Consensus 716 r~~wLk~~aLa~~~kweeLek-fAkskks-P-IGy~PFV 751 (829)
T KOG2280|consen 716 RLWWLKLTALADIKKWEELEK-FAKSKKS-P-IGYLPFV 751 (829)
T ss_pred hhHHHHHHHHHhhhhHHHHHH-HHhccCC-C-CCchhHH
Confidence 999998654444444 44433 3333333 4 8899884
No 193
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.06 E-value=1.3e+02 Score=29.41 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhh
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCL 220 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L 220 (271)
...-..+..+...|+..+|.+.|..+.....+ .-++.+.|+|.++-.|++++|.. +..|
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~----~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPE----NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcc----cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34667888999999999999999999864432 26789999999999999999876 4443
No 194
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=35.95 E-value=1e+02 Score=32.10 Aligned_cols=69 Identities=22% Similarity=0.153 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R 231 (271)
..+++--.|..+...|+..-++++|++++... +--++-..|++++.-+..|+||+. |+--...+ |.|.|
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-----~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d--P~~~~ 506 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-----PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD--PKSKR 506 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-----cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--ccchH
Confidence 46677778888899999999999999998643 233577789999999999999998 55322233 55544
No 195
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=35.20 E-value=81 Score=27.89 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.6
Q ss_pred HHHHHHHHhcchHHHhhhhh
Q 024174 200 ALVEILIYQGKYREALECNC 219 (271)
Q Consensus 200 llvEilI~qGk~~EAL~~~~ 219 (271)
.++|+|+.+|++-||++|-.
T Consensus 94 ~iievLL~~g~vl~ALr~ar 113 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYAR 113 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 57899999999999999663
No 196
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.54 E-value=1e+02 Score=27.80 Aligned_cols=30 Identities=17% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174 228 SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 228 ~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~ 257 (271)
.+.+....-|-++-=||+ +||.+||.+=..
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 456777779999999999 999999986443
No 197
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.35 E-value=1.4e+02 Score=29.17 Aligned_cols=97 Identities=21% Similarity=0.171 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHH--HHHHhcchHHHhh-hhh---hcccCCCCCCC-Cc
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVE--ILIYQGKYREALE-CNC---LKDEQRIPSDG-RF 232 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvE--ilI~qGk~~EAL~-~~~---L~~e~~~p~D~-R~ 232 (271)
--+.+|.+.+-.+..||+...++|-+-+.+.+.+. .--|+|-. =.+-.-+.++|++ |++ ++.++ -||. -.
T Consensus 74 yEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd-tAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~ 150 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD-TAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHH
Confidence 45677788888899999999999998887764221 12233322 2233467899999 884 55443 2331 12
Q ss_pred hhH--HHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 233 PFY--KAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 233 ~L~--k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
.|| =++||--|++ +||..-+.+=..++
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 333 3688999999 99988776544443
No 198
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=34.14 E-value=2.5e+02 Score=26.18 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh--hhcccCC------
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN--CLKDEQR------ 225 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~--~L~~e~~------ 225 (271)
++.|.+-..+..|.+.|++++|.+.|+.=-+......-. ...+-+-+|+++-.-|++|.+ .. .+.+++.
T Consensus 3 ~eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~--~~~~t~e~iralT~t~~~a~~al~~~~~~~~e~~~~at~ 80 (232)
T PF09577_consen 3 KELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFK--GRPLTMEEIRALTETIEEAKKALTSVSMSEEEKIRAATQ 80 (232)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhcccc--ccccCHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 567889999999999999999999988544433322222 222566788888777777776 33 3333321
Q ss_pred ------CCCCCCchhHHHHHHHhhCh-H------------HHHHHHHHHHhhcC
Q 024174 226 ------IPSDGRFPFYKAIIYTMLNM-E------------EAKKWWEEFAETID 260 (271)
Q Consensus 226 ------~p~D~R~~L~k~IIYtmL~k-~------------EA~k~we~f~~lv~ 260 (271)
-..-.+=|||.-.=..|++. . ...+.||.|.+.++
T Consensus 81 ~RLavDAl~~~~qPLW~~~e~~i~~~~~~mk~a~~~~~~~~f~~~~n~f~~~y~ 134 (232)
T PF09577_consen 81 FRLAVDALTHKHQPLWLQYEKPIMEDFQRMKQAAQKGDKEAFRASLNEFLSHYE 134 (232)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 02335667877665555544 2 23346667666543
No 199
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=86 Score=32.77 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 199 MALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
.+|+|.+..-++.+||-+ |+.-+.=+. ...-.+++=|=.|.=|.. .||++++++|.+..
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 467787777788899988 444332220 223566677777888888 89999999998754
No 200
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.57 E-value=1.1e+02 Score=27.71 Aligned_cols=61 Identities=20% Similarity=0.126 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLK 221 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~ 221 (271)
-..|......|++++|++.|+.+..-+++|+ .-..++-..+.|-....|+.++.+. |-+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3678888899999999999999988888884 7777888888888888899999888 43654
No 201
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.48 E-value=85 Score=27.81 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=38.8
Q ss_pred CChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174 152 PSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDE 223 (271)
Q Consensus 152 Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e 223 (271)
+|.+.-=++.|..++=....+..+-+.+|++-++ +..|++-|+-=-.||==+..-|+|++|++ +.-|.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444333444544444444555667788887776 34454444433333333445689999999 4534433
No 202
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=32.64 E-value=1.8e+02 Score=30.61 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHHHHhhcC----------CC-----------cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC
Q 024174 171 GKPEFAVTLLKKVYEDCKNE----------PE-----------PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS 228 (271)
Q Consensus 171 gk~deave~Le~A~eka~~e----------~e-----------eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~ 228 (271)
....+|.+++++|++..+.. .+ .--+++=-++.-+--.|+.+||.+ +.+|.++. |.
T Consensus 214 ~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~ 291 (539)
T PF04184_consen 214 STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PN 291 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--Cc
Confidence 44678888888888776532 00 113455556777777899999999 88998876 54
Q ss_pred CCCchhHHHHHHHh----hCh---HHHHHHHHHHHhh
Q 024174 229 DGRFPFYKAIIYTM----LNM---EEAKKWWEEFAET 258 (271)
Q Consensus 229 D~R~~L~k~IIYtm----L~k---~EA~k~we~f~~l 258 (271)
+- -++|-|.| |+. .|++.--++|-+.
T Consensus 292 ~~----~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 292 LD----NLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred cc----hhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 32 34454444 333 8888888888654
No 203
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=32.56 E-value=1.9e+02 Score=25.53 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHHH---hhcCCCcccchHHHHHHHHHHhcchHHHhhhhhhcccCCCCCCCCc---
Q 024174 160 IKAEAVKQMKYGK-PEFAVTLLKKVYED---CKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRF--- 232 (271)
Q Consensus 160 lk~~A~~L~kSgk-~deave~Le~A~ek---a~~e~eeaynirmllvEilI~qGk~~EAL~~~~L~~e~~~p~D~R~--- 232 (271)
+..+-..|..++. .++..++|++.++. +++++..|+++ =|..+|- |++|.++. |+|...
T Consensus 10 ~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~tA~~l----------fG~P~~~--a~eli~~~--~k~~~~~~~ 75 (206)
T PF06570_consen 10 IFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKTARQL----------FGDPKEY--ADELIKPL--PKPKKKNKN 75 (206)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHH----------cCCHHHH--HHHHhccc--cCCcccccc
Confidence 3344444444433 56677777777665 33445555553 2444443 47787765 444433
Q ss_pred -hhHHHHHHHh
Q 024174 233 -PFYKAIIYTM 242 (271)
Q Consensus 233 -~L~k~IIYtm 242 (271)
..+..++++.
T Consensus 76 ~~~~~~~ld~~ 86 (206)
T PF06570_consen 76 SNPWLMALDNS 86 (206)
T ss_pred cchHHHHHHHH
Confidence 3366665553
No 204
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=32.39 E-value=1.4e+02 Score=27.21 Aligned_cols=66 Identities=11% Similarity=0.243 Sum_probs=42.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcC----C---CcccchHHHHHHHHHHh-------cchHHHhhh-hhhcccCCC
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNE----P---EPAYNVEMALVEILIYQ-------GKYREALEC-NCLKDEQRI 226 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e----~---eeaynirmllvEilI~q-------Gk~~EAL~~-~~L~~e~~~ 226 (271)
....+|..-....++.+|+++|.+|.++- | +..+++..++...=.+. +-|++|..| +.-++++
T Consensus 33 ~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~-- 110 (186)
T PF06552_consen 33 GALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED-- 110 (186)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC--
Confidence 34455555677778999999999887752 4 46677777776665543 337777774 4567666
Q ss_pred CCC
Q 024174 227 PSD 229 (271)
Q Consensus 227 p~D 229 (271)
|.+
T Consensus 111 P~n 113 (186)
T PF06552_consen 111 PNN 113 (186)
T ss_dssp TT-
T ss_pred CCc
Confidence 665
No 205
>PRK10941 hypothetical protein; Provisional
Probab=32.35 E-value=2.2e+02 Score=26.78 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=65.4
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 146 YTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 146 ~~~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
+--|+.|.+-...-+..+=..++..++.+.|+...+-.+...-+++.+-|+-.++.+|+ |.+..|+. ++..+++.
T Consensus 170 ~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL----~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 170 DLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL----DCEHVALSDLSYFVEQC 245 (269)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhC
Confidence 33344443323333555666678889999999999988877766777888877887665 77778888 77777776
Q ss_pred CCCCCCCchhHHHHHHHhh
Q 024174 225 RIPSDGRFPFYKAIIYTML 243 (271)
Q Consensus 225 ~~p~D~R~~L~k~IIYtmL 243 (271)
|.|--.-+-|.-|..|=
T Consensus 246 --P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 246 --PEDPISEMIRAQIHSIE 262 (269)
T ss_pred --CCchhHHHHHHHHHHHh
Confidence 88877777777776653
No 206
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=3.1e+02 Score=26.92 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh-----cCCCcccchHH---------HHHHHHHHhcchHHHhh-hhhhc
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCK-----NEPEPAYNVEM---------ALVEILIYQGKYREALE-CNCLK 221 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~-----~e~eeaynirm---------llvEilI~qGk~~EAL~-~~~L~ 221 (271)
|-.|++.-.+|-+.|.+.||..--.+|+-..+ +.|.+..-+++ -+.|-+...|+|=|++. |+++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 55688888999999988888777777765543 33655555554 25788888999999999 99877
Q ss_pred ccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 222 DEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 222 ~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-. |.....|+-.|=-+.=.=+ .||+.-|.+--++-|
T Consensus 258 ~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 258 RHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 666 7777778777777766666 888877766555543
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=32.08 E-value=1.4e+02 Score=33.10 Aligned_cols=79 Identities=29% Similarity=0.333 Sum_probs=51.0
Q ss_pred HHHHhcCChhHHHHHHHHHH-HHhh---cC---CCcccchHHHHHHHHHHhcchHHHhhhh-hhcccCCCCCCCCchhHH
Q 024174 165 VKQMKYGKPEFAVTLLKKVY-EDCK---NE---PEPAYNVEMALVEILIYQGKYREALECN-CLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 165 ~~L~kSgk~deave~Le~A~-eka~---~e---~eeaynirmllvEilI~qGk~~EAL~~~-~L~~e~~~p~D~R~~L~k 236 (271)
-+--++|..++|..+|+.-. +-.. ++ ..|+|-| |+|||-+.+.|..+.||+-. -|.|= .|+=||
T Consensus 985 ~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHF-milAQrql~eg~v~~Al~Tal~L~DY----Ed~lpP--- 1056 (1189)
T KOG2041|consen 985 RKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHF-MILAQRQLFEGRVKDALQTALILSDY----EDFLPP--- 1056 (1189)
T ss_pred hhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHH-HHHHHHHHHhchHHHHHHHHhhhccH----hhcCCH---
Confidence 34456688888887666432 1110 11 4577776 78999999999999999844 55544 355554
Q ss_pred HHHHHhhCh-HHHHHH
Q 024174 237 AIIYTMLNM-EEAKKW 251 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~ 251 (271)
+=||+||-- .-|..+
T Consensus 1057 ~eiySllALaaca~ra 1072 (1189)
T KOG2041|consen 1057 AEIYSLLALAACAVRA 1072 (1189)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 679999864 444333
No 208
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=31.89 E-value=2.7e+02 Score=31.38 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.2
Q ss_pred HHHHHHHhcchHHHhh-hhhhcccCCCCCCC-CchhH-HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 201 LVEILIYQGKYREALE-CNCLKDEQRIPSDG-RFPFY-KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 201 lvEilI~qGk~~EAL~-~~~L~~e~~~p~D~-R~~L~-k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
++..+--||+|++|-+ |.+=.+.+ .|+ =.+++ =|=+|.-.+. ++|++|||++-+..|
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKAD---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccC---CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 4566677899999999 55544444 343 33322 2457888888 999999999999888
No 209
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.27 E-value=1.3e+02 Score=28.78 Aligned_cols=83 Identities=28% Similarity=0.269 Sum_probs=52.9
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHH-HHHHHHhcchHHHhh-hhhhcccCC
Q 024174 148 VPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMAL-VEILIYQGKYREALE-CNCLKDEQR 225 (271)
Q Consensus 148 ~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmll-vEilI~qGk~~EAL~-~~~L~~e~~ 225 (271)
.|+.|+++.--..-.-|.-++|-++.+.|++---+|++. -+-|+=-+.= |+.+-...+|++|+. |..+...+
T Consensus 125 cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-----~pty~kAl~RRAeayek~ek~eealeDyKki~E~d- 198 (271)
T KOG4234|consen 125 CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-----NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD- 198 (271)
T ss_pred CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-
Confidence 344555555455667788888888888877766666532 1222222222 677777799999999 99887665
Q ss_pred CCCCCCchhHHHHH
Q 024174 226 IPSDGRFPFYKAII 239 (271)
Q Consensus 226 ~p~D~R~~L~k~II 239 (271)
|+ |.-+-+||+
T Consensus 199 -Ps--~~ear~~i~ 209 (271)
T KOG4234|consen 199 -PS--RREAREAIA 209 (271)
T ss_pred -cc--hHHHHHHHH
Confidence 44 335555654
No 210
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=31.17 E-value=1.3e+02 Score=33.84 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh-hhcccCCCCCCCC-ch
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN-CLKDEQRIPSDGR-FP 233 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~-~L~~e~~~p~D~R-~~ 233 (271)
..+=.+.+++|-.+|..++|..++..--|.. .+-.++-+=||.+++.+|+|..|.+ |+ ||.+-- +++-+ .-
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~----~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~--~~~~~~vl 719 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREAT----SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY--KKNRSEVL 719 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHH----hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHH
Confidence 3445677889999999999999988665543 3567888999999999999999999 88 877553 23211 12
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETIDDE 262 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~~ 262 (271)
.|=|=+|-=-++ .||+++-.+=+.+.|.+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 233334555566 88888888888888843
No 211
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.63 E-value=4.5e+02 Score=25.79 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh-cCCCcccchHHHHHHHHHHhcchHHHhh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCK-NEPEPAYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~-~e~eeaynirmllvEilI~qGk~~EAL~ 216 (271)
...+++.+|+.+..-+..+ +.|++-+|..- ......--++++=+.|.+..|+|+||++
T Consensus 71 ~lqAvr~~a~~~~~e~~~~---~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~ 129 (299)
T KOG3081|consen 71 PLQAVRLLAEYLELESNKK---SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALK 129 (299)
T ss_pred hHHHHHHHHHHhhCcchhH---HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHH
Confidence 3456667777666554444 33444444322 1223333456666777777777777776
No 212
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=30.50 E-value=86 Score=32.51 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=37.5
Q ss_pred HhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhChHHHHHHHHHHHhhc
Q 024174 207 YQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNMEEAKKWWEEFAETI 259 (271)
Q Consensus 207 ~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k~EA~k~we~f~~lv 259 (271)
++.+|++++. ..++..+. -...|=+|||+++.-. -+++.|+++|++++..+
T Consensus 538 ~~~~~~~~~~~~~~~l~~~-gr~k~~~p~y~~l~~~-~~~~~a~~~f~~~~~~y 589 (601)
T TIGR02411 538 IQAKLEDEYPLIAEWLGTV-GRMKFVRPGYRLLNAF-VDKDFAIRTFEKFKDSY 589 (601)
T ss_pred HhcCCchhHHHHHHHHHhc-CCcEEehHHHHHHHhc-cCHHHHHHHHHHHhhcc
Confidence 3899999997 55544332 1466678899999776 34599999999998643
No 213
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=30.09 E-value=71 Score=27.15 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=16.3
Q ss_pred ccchHHHHHHHHHHhcchHHHhh
Q 024174 194 AYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 194 aynirmllvEilI~qGk~~EAL~ 216 (271)
+--|.|.=.-=|+.||+|++|+.
T Consensus 38 ~E~v~lIRlsSLmNrG~Yq~Al~ 60 (115)
T TIGR02508 38 EEAVQLIRLSSLMNRGDYQSALQ 60 (115)
T ss_pred HHHHHHHHHHHHHccchHHHHHH
Confidence 33444544556788999999996
No 214
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.53 E-value=59 Score=19.33 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=10.8
Q ss_pred HHHHHHhcchHHHhh-hhhhccc
Q 024174 202 VEILIYQGKYREALE-CNCLKDE 223 (271)
Q Consensus 202 vEilI~qGk~~EAL~-~~~L~~e 223 (271)
+..+...|+++.|+. ++++.+.
T Consensus 8 l~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 8 LRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444555666555 4444433
No 215
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=29.42 E-value=1.1e+02 Score=20.66 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHHhcchHHHhh-hhhhcccC-CCCCCCCchhHHHHHHHhhCh
Q 024174 203 EILIYQGKYREALE-CNCLKDEQ-RIPSDGRFPFYKAIIYTMLNM 245 (271)
Q Consensus 203 EilI~qGk~~EAL~-~~~L~~e~-~~p~D~R~~L~k~IIYtmL~k 245 (271)
.=.|..|++++|++ ++++...- .--++.-+.|++-..-.|++.
T Consensus 9 ~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~ 53 (58)
T smart00668 9 RELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQ 53 (58)
T ss_pred HHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHc
Confidence 34566888888888 66533221 003577777777776666654
No 216
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.79 E-value=2.2e+02 Score=31.30 Aligned_cols=96 Identities=20% Similarity=0.108 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCC--CCCCch
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIP--SDGRFP 233 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p--~D~R~~ 233 (271)
-+..-..|..+...|+.+.|+..-+.|+|+--+-.+. ++. ++--|+-||+.++|-+ |++-..-+ | -++|..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida--~in--la~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDA--YIN--LAAALVTQGDLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHH--Hhh--HHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcc
Confidence 3457779999999999999999999888643222222 233 3445778999999998 44433223 3 556665
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
| |+...-.|. +||+.|+-|=.++.|
T Consensus 190 l--gnLlka~Grl~ea~~cYlkAi~~qp 215 (966)
T KOG4626|consen 190 L--GNLLKAEGRLEEAKACYLKAIETQP 215 (966)
T ss_pred h--hHHHHhhcccchhHHHHHHHHhhCC
Confidence 4 677777888 999999888777766
No 217
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=28.30 E-value=91 Score=28.44 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=38.1
Q ss_pred cCCCcc---cchHHHHHHHHHH-hc-----chHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-----HHHHHHHH
Q 024174 189 NEPEPA---YNVEMALVEILIY-QG-----KYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-----EEAKKWWE 253 (271)
Q Consensus 189 ~e~eea---ynirmllvEilI~-qG-----k~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-----~EA~k~we 253 (271)
++|.++ ++=..+|-|+--+ +| =++||.. +++-..-+ |..-+.+.|=|.-|+-+.+ .||+++|+
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~ 97 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN--PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFE 97 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 455444 4555666555433 22 2455554 44333334 8889999999999998776 58888887
Q ss_pred H
Q 024174 254 E 254 (271)
Q Consensus 254 ~ 254 (271)
+
T Consensus 98 k 98 (186)
T PF06552_consen 98 K 98 (186)
T ss_dssp H
T ss_pred H
Confidence 6
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=28.21 E-value=71 Score=33.28 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhhhh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECN 218 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~~~ 218 (271)
.|.-+-.+|-++|+++..|..++.|+++--+|-.-..-|=--|.--+.|-++|+.||+|-
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 466677899999999999999999996543332211112222334477788899999865
No 219
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.88 E-value=73 Score=31.09 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=37.9
Q ss_pred HHHHHHHHHHh-------cchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHH
Q 024174 198 EMALVEILIYQ-------GKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKK 250 (271)
Q Consensus 198 rmllvEilI~q-------Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k 250 (271)
-..+||=|=.| ++|+||+. |.+=..=+ |+|+=.|=-+|-.|+=|+. +.|=+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVk 136 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVK 136 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHH
Confidence 45566655444 67999998 66644333 9999999999999999998 76643
No 220
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.74 E-value=2.8e+02 Score=22.83 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC---CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP---EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~---eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
++-|+|+-.-.-.++......++|+.+....+.++ .+.|++++-|-=+-. .+++.. ++.|.....--+=+-.
T Consensus 26 ~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~----~~~~~~if~~l~~~~IG~~~A~f 101 (126)
T PF08311_consen 26 LRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL----SSDPREIFKFLYSKGIGTKLALF 101 (126)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT----BSHHHHHHHHHHHHTTSTTBHHH
T ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH----ccCHHHHHHHHHHcCccHHHHHH
Confidence 45578877777776777888899999999887764 577777776644433 337777 7788877632233445
Q ss_pred hhHHHHHHHhhCh-HHHHHHHH
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWE 253 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we 253 (271)
|.-=|-++-..+. ++|.+-++
T Consensus 102 Y~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 102 YEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 6666778888888 88888765
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=26.62 E-value=2.1e+02 Score=28.67 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh-hhcccCC--CCCCCCchhHHHHHHHhhCh-H
Q 024174 172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN-CLKDEQR--IPSDGRFPFYKAIIYTMLNM-E 246 (271)
Q Consensus 172 k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~-~L~~e~~--~p~D~R~~L~k~IIYtmL~k-~ 246 (271)
..+.|.+.|+...+.+ |+ -.=+.+.-+.|+..+|+.++|+. ++ ++..++. |.... -+.=.|..|.++.+ +
T Consensus 248 ~~~~a~~lL~~~~~~y---P~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l-~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL-CYFELAWCHMFQHDWE 322 (468)
T ss_pred CHHHHHHHHHHHHHhC---CC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH-HHHHHHHHHHHHchHH
Confidence 4466777777666543 32 34466777889999999999999 55 3432221 11111 11225788899999 9
Q ss_pred HHHHHHHHHHhh
Q 024174 247 EAKKWWEEFAET 258 (271)
Q Consensus 247 EA~k~we~f~~l 258 (271)
+|.++|..-.+.
T Consensus 323 ~A~~~f~~L~~~ 334 (468)
T PF10300_consen 323 EAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHhc
Confidence 999999876653
No 222
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=26.31 E-value=1.3e+02 Score=24.06 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH-hcchHHHhh-hhh-hcccCCCCCCCCc
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY-QGKYREALE-CNC-LKDEQRIPSDGRF 232 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~-qGk~~EAL~-~~~-L~~e~~~p~D~R~ 232 (271)
...-++..|+.|+-=|+ +.|.+.|+. + ++++.+.|-..|++|--+ ....++.+. +.+ +..... +-..-.
T Consensus 4 ~Lsg~~KAAilLl~Lge-e~Aa~vlk~-l-----~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~-~~~gg~ 75 (108)
T PF14842_consen 4 KLSGIQKAAILLLALGE-EAAAEVLKH-L-----DEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGG-IVSGGR 75 (108)
T ss_dssp HHHHHHHHHHHHHHS-H-HHHHHHHHH-S------HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT----S-HH
T ss_pred cCCHHHHHHHHHHHHCH-HHHHHHHcc-C-----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccc-cccChH
Confidence 45567888888888877 778888873 3 467778888888888755 667777776 333 333332 333444
Q ss_pred hhHHHHHHHhhChHHHHHHHHHHHhhc
Q 024174 233 PFYKAIIYTMLNMEEAKKWWEEFAETI 259 (271)
Q Consensus 233 ~L~k~IIYtmL~k~EA~k~we~f~~lv 259 (271)
-.-+-++.--|+++.|++-.++-..-.
T Consensus 76 ~~~~~lL~~alg~~~a~~il~~~~~~~ 102 (108)
T PF14842_consen 76 DFARRLLEKALGEEKAKEILDRLEQSM 102 (108)
T ss_dssp HHHHH-HHHHS---HHHHH--------
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHhccc
Confidence 445566666677788888877665443
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=26.06 E-value=1.4e+02 Score=27.43 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCCcccchHHHHHHHHHH-hcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHH
Q 024174 177 VTLLKKVYEDCKNEPEPAYNVEMALVEILIY-QGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWE 253 (271)
Q Consensus 177 ve~Le~A~eka~~e~eeaynirmllvEilI~-qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we 253 (271)
++...+.++.|++++.--+.|=++.|.|=.+ .++.+-|.+ ++...+.- |.|.-..+.=.=-...++. +.|+..||
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 5555566777777766666666677777444 556555777 54333322 4543222211111123344 66666666
Q ss_pred HHHhhcC
Q 024174 254 EFAETID 260 (271)
Q Consensus 254 ~f~~lv~ 260 (271)
+....++
T Consensus 95 r~i~~l~ 101 (280)
T PF05843_consen 95 RAISSLP 101 (280)
T ss_dssp HHCCTSS
T ss_pred HHHHhcC
Confidence 6555554
No 224
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.98 E-value=1.6e+02 Score=29.71 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 174 EFAVTLLKKVYEDCKNE--PEPAYNVEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 174 deave~Le~A~eka~~e--~eeaynirmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
++-++-|+++.|+++++ .+|.++.-+..+|.++--|+-+-|++ |....+
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45567888889998887 57999999999999999999998888 554443
No 225
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.39 E-value=6.5e+02 Score=24.71 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=44.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH-hhcC--CCcccchHHH--------------HHHHHHHhcchHHHhh-hhhhcccCC
Q 024174 164 AVKQMKYGKPEFAVTLLKKVYED-CKNE--PEPAYNVEMA--------------LVEILIYQGKYREALE-CNCLKDEQR 225 (271)
Q Consensus 164 A~~L~kSgk~deave~Le~A~ek-a~~e--~eeaynirml--------------lvEilI~qGk~~EAL~-~~~L~~e~~ 225 (271)
.++-|-+.+.|..+-.|..|+=+ +... ..++++|==. .+=.+|.+|+|+||.. .+...+++
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 34455566667777666666433 2221 2455544333 3446788999999998 55544444
Q ss_pred CCCCCCchhHHHHH-HHhhCh-HHH
Q 024174 226 IPSDGRFPFYKAII-YTMLNM-EEA 248 (271)
Q Consensus 226 ~p~D~R~~L~k~II-YtmL~k-~EA 248 (271)
++|.-. |---|+ -.++|| .|+
T Consensus 238 -~~dpet-L~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 238 -AKDPET-LANLIVLALHLGKDAEV 260 (299)
T ss_pred -CCCHHH-HHHHHHHHHHhCCChHH
Confidence 577222 223333 345666 443
No 226
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=25.36 E-value=3.4e+02 Score=26.41 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc-----------C-----------CCcccchHHHH---HHHHHHhcch
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN-----------E-----------PEPAYNVEMAL---VEILIYQGKY 211 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~-----------e-----------~eeaynirmll---vEilI~qGk~ 211 (271)
|+.|-.++..+...|+.+.|.+.|+.|+=.... + -.|.|.|=++| ++.+..+|-|
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 456999999999999999999999999433320 1 13455555554 5677778999
Q ss_pred HHHhh-hhhhcccCCCCC-C
Q 024174 212 REALE-CNCLKDEQRIPS-D 229 (271)
Q Consensus 212 ~EAL~-~~~L~~e~~~p~-D 229 (271)
..|+. |+-|..-+ |. |
T Consensus 120 rTAlE~~KlLlsLd--p~~D 137 (360)
T PF04910_consen 120 RTALEWCKLLLSLD--PDED 137 (360)
T ss_pred HHHHHHHHHHHhcC--CCCC
Confidence 99999 77777666 66 6
No 227
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=25.07 E-value=3.1e+02 Score=28.13 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHhhcCC----------------------CcccchHHHHHHHHHHh
Q 024174 153 SAEDVNAIKAEAVKQMKY--GKPEFAVTLLKKVYEDCKNEP----------------------EPAYNVEMALVEILIYQ 208 (271)
Q Consensus 153 s~e~v~~lk~~A~~L~kS--gk~deave~Le~A~eka~~e~----------------------eeaynirmllvEilI~q 208 (271)
+++++..|--..-+|... ++.+.|.+.++++++-.++.- .=-.++...++=+.+..
T Consensus 295 ~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~ 374 (608)
T PF10345_consen 295 PKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR 374 (608)
T ss_pred CHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC
Q ss_pred cchHHHhh-hhhhcccCCCCCC-------CCchhHHHHHHHhhCh-HHHHHHH
Q 024174 209 GKYREALE-CNCLKDEQRIPSD-------GRFPFYKAIIYTMLNM-EEAKKWW 252 (271)
Q Consensus 209 Gk~~EAL~-~~~L~~e~~~p~D-------~R~~L~k~IIYtmL~k-~EA~k~w 252 (271)
|+|.+|.+ .+++.+......+ ...++..|+.|.-.|. +.|+.+|
T Consensus 375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y 427 (608)
T PF10345_consen 375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQY 427 (608)
T ss_pred cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
No 228
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=24.97 E-value=38 Score=23.50 Aligned_cols=12 Identities=50% Similarity=1.129 Sum_probs=10.1
Q ss_pred hHHHHHhHhhcc
Q 024174 75 SLVLTCALGIMS 86 (271)
Q Consensus 75 SlaL~C~Lgiig 86 (271)
.+.|||+.|||.
T Consensus 9 G~lLAcAFgiin 20 (37)
T COG4890 9 GLLLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHHHH
Confidence 467899999997
No 229
>PF12854 PPR_1: PPR repeat
Probab=24.63 E-value=71 Score=20.43 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=7.7
Q ss_pred HHHHHHHhcchHHHhh
Q 024174 201 LVEILIYQGKYREALE 216 (271)
Q Consensus 201 lvEilI~qGk~~EAL~ 216 (271)
|+.-++..|+++||.+
T Consensus 13 lI~~~Ck~G~~~~A~~ 28 (34)
T PF12854_consen 13 LIDGYCKAGRVDEAFE 28 (34)
T ss_pred HHHHHHHCCCHHHHHH
Confidence 3444444555555554
No 230
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=24.38 E-value=98 Score=29.57 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHH----HHHhhcC---CCcccchHHHHHHHHHHhcchHHHhhhhh----hcccCCCCCCCCchhHHHH
Q 024174 171 GKPEFAVTLLKKV----YEDCKNE---PEPAYNVEMALVEILIYQGKYREALECNC----LKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 171 gk~deave~Le~A----~eka~~e---~eeaynirmllvEilI~qGk~~EAL~~~~----L~~e~~~p~D~R~~L~k~I 238 (271)
|+...|.+.|++. +|-+++| .+.+-|..+++=||+.|+..|+++-..++ -++ +.++.-+|-+||--+
T Consensus 117 g~rKtA~~~~rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaEdy~k-ckI~~~arK~~~nwv 194 (265)
T PF06409_consen 117 GKRKTAKKHLRKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAEDYYK-CKIAPSARKPLDNWV 194 (265)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCccccchHHHHH
Confidence 4555555545443 3333344 47788999999999999999999876332 222 224566666666443
No 231
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=24.27 E-value=2.9e+02 Score=24.71 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
.+.....-..|....+.|..+.|...|..+...-.......-.+.++-++++-.+|+-++|++ .+++.+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556777888889999999999999987743211222267899999999999999999998 444443
No 232
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=24.09 E-value=1.7e+02 Score=31.52 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=73.9
Q ss_pred HHHHHHHHHhc--CChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhhhhhhcccCCCCCCCCchhHHH
Q 024174 160 IKAEAVKQMKY--GKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALECNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 160 lk~~A~~L~kS--gk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~~~~L~~e~~~p~D~R~~L~k~ 237 (271)
+=|++.+|-.+ .++++|.+--.+|++--+.+.+=.|++-+|=+||.-++|-++-=.+.-+|. |+--=.+++=|
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-----~~~ra~w~~~A 150 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-----PSQRASWIGFA 150 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hhhHHHHHHHH
Confidence 67777776555 889999999999987665566788999999999998888766544333332 44434577888
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhc
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv 259 (271)
+=|-+++. .+|-+.-++|.++.
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999 99999999999887
No 233
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.73 E-value=2.1e+02 Score=26.68 Aligned_cols=64 Identities=23% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCChhhHHHH--HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh
Q 024174 151 GPSAEDVNAI--KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 151 ~Ps~e~v~~l--k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~ 219 (271)
.|.-|++..| ..+|.++--.++.|+|++.|..--+ ..=+--+.-+-..+|+.+|+-+||.+ |+.
T Consensus 118 ~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-----~~w~~~~~elrGDill~kg~k~~Ar~ay~k 184 (207)
T COG2976 118 QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-----ESWAAIVAELRGDILLAKGDKQEARAAYEK 184 (207)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-----ccHHHHHHHHhhhHHHHcCchHHHHHHHHH
Confidence 4555666664 5789999999999999999983221 11122335567899999999999999 874
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.54 E-value=4.1e+02 Score=26.09 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=25.6
Q ss_pred cccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 193 PAYNVEMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 193 eaynirmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
+-.+.++.++.+++.+|++++|+. .-.+...+
T Consensus 234 dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 234 DDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 356889999999999999999997 44555554
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=23.49 E-value=2.7e+02 Score=24.90 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-HhhcCC----------------------CcccchHHHHHHHHHHhcchHHHh
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYE-DCKNEP----------------------EPAYNVEMALVEILIYQGKYREAL 215 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~e-ka~~e~----------------------eeaynirmllvEilI~qGk~~EAL 215 (271)
....|..|-..|+..+|++.|++..+ ....+. ....+-.-..++.+...|+|.+.+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 55678888899999999999998887 333220 012333455677777777777776
No 236
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.40 E-value=3.4e+02 Score=28.83 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hh-hhcccC---CCCCC
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CN-CLKDEQ---RIPSD 229 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~-~L~~e~---~~p~D 229 (271)
|.+..-..++.-+-+.++.+++.+..+++.++--+ --|.|+ +.+|||--|++|+.|.+ |+ ++.=|. ...-.
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~---~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYN---LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHH---HHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 34555556666677777777777777766654311 135555 58999999999999999 66 333221 11225
Q ss_pred CCchhHHHHHHHhhCh--HHHHHHHHHHHhhcC
Q 024174 230 GRFPFYKAIIYTMLNM--EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ~R~~L~k~IIYtmL~k--~EA~k~we~f~~lv~ 260 (271)
.=|+.-||++-.=-.+ .+|.+.-++=.++=|
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCc
Confidence 6677777766432222 555555554444433
No 237
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=23.35 E-value=1.3e+02 Score=26.54 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE 190 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e 190 (271)
-+..+...+|..||...|.+++.+|++...+.
T Consensus 21 iv~rliN~iM~~GKK~~A~~Ivy~Af~ii~~k 52 (148)
T COG0049 21 IVERLINKIMRDGKKSLAEKIVYGAFDIIEKK 52 (148)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 47778888899999999999999999987654
No 238
>CHL00053 rps7 ribosomal protein S7
Probab=23.30 E-value=1.4e+02 Score=25.83 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhc
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN 189 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~ 189 (271)
.+..+...||+.|+...|.+++.+|++....
T Consensus 22 lv~~lin~lm~~GKK~~A~kIv~~al~~i~~ 52 (155)
T CHL00053 22 LVNMLVNRILKSGKKSLAYRIVYRALKKIQQ 52 (155)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3888999999999999999999999987654
No 239
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=23.22 E-value=1e+02 Score=26.61 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc-C---CCcccchHHHHHHHHHHhcchHHHhh
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN-E---PEPAYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~-e---~eeaynirmllvEilI~qGk~~EAL~ 216 (271)
.+.......|..+.+.|+...|.+.|+.+-.-..- . |=..|.--+--+.-++-+|+|+||-.
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~ 138 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANA 138 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 46788999999999999999999999976321100 0 33455566777888888999999986
No 240
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=23.17 E-value=2.8e+02 Score=30.57 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
|=.+|+.|...+... -.-.+|+++|+++++ |=++++.+.-.+.+++.|+. +..-++.+.-.-|+=-+|||
T Consensus 789 LWaEaI~le~~~~rk---Tks~DALkkce~dph----Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk-- 859 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRK---TKSIDALKKCEHDPH----VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK-- 859 (913)
T ss_pred hHHHHHHhccCcccc---hHHHHHHHhccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH--
Confidence 334556666655442 233467888877776 56788888888999999999 66666555235677788887
Q ss_pred HHHhhCh-HHHHHHHHHHHhhcC
Q 024174 239 IYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-|-..|. +.-+..+++|-+.-|
T Consensus 860 fel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 860 FELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHhCCHHHHHHHHHHHhccCC
Confidence 4667777 777777888776555
No 241
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.12 E-value=2.9e+02 Score=29.38 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh---hcCCC--cccchH-----HHHHHHHHHhcchHHHhhhhhhcccC
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDC---KNEPE--PAYNVE-----MALVEILIYQGKYREALECNCLKDEQ 224 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka---~~e~e--eaynir-----mllvEilI~qGk~~EAL~~~~L~~e~ 224 (271)
.+..+|+.+|+---..|--.+|+++|.+=+.-- ..-+. +.-.++ .-..-..=++.-|-||.. +.
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~------~~ 424 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR------QL 424 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH------hC
Confidence 366779999998888898899999998764321 00111 000000 000111112333444442 22
Q ss_pred CCC--CCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 225 RIP--SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 225 ~~p--~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
| .|.-.+.+=||+|-|.++ +.|-.||+.=-+.-|
T Consensus 425 --~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P 461 (579)
T KOG1125|consen 425 --PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP 461 (579)
T ss_pred --CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 3 678889999999999999 999999987666555
No 242
>COG4857 Predicted kinase [General function prediction only]
Probab=22.91 E-value=99 Score=30.93 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHH---hcchHHHhhhhhhcccCCCCC-CCCchhHHHHHHHhhCh-HHHHHHHHHHHh
Q 024174 193 PAYNVEMALVEILIY---QGKYREALECNCLKDEQRIPS-DGRFPFYKAIIYTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 193 eaynirmllvEilI~---qGk~~EAL~~~~L~~e~~~p~-D~R~~L~k~IIYtmL~k-~EA~k~we~f~~ 257 (271)
=+++|.|+|+-..+- |.-++|- .. .+ .+|-||++.|--+---- +|-++.|+++++
T Consensus 260 mafDiG~~iaNl~~~~~s~~g~~~~--------~~--krd~~r~~L~e~i~~iw~~F~e~fs~lW~k~~~ 319 (408)
T COG4857 260 MAFDIGMLIANLWMSLFSQKGFEED--------SG--KRDEMRAYLLECILDIWETFREEFSLLWRKERQ 319 (408)
T ss_pred chhhHHHHHHHHHHHHHhhhchhhc--------cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 368999999988764 2222211 11 23 37999999986665555 889999999975
No 243
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=22.84 E-value=21 Score=26.59 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=15.2
Q ss_pred hhChHHHHHHHHHHHhhcCCCCCCCCCCC
Q 024174 242 MLNMEEAKKWWEEFAETIDDEEFDPTKGF 270 (271)
Q Consensus 242 mL~k~EA~k~we~f~~lv~~~~f~~~~~~ 270 (271)
+++-+|=+-||++|..--+ ..|.|.+++
T Consensus 20 iM~~~eF~~CW~nFV~~~~-~~F~pW~~l 47 (55)
T PF05240_consen 20 IMTYSEFQYCWENFVDNQG-RPFQPWEKL 47 (55)
T ss_dssp E--HHHHHHHHHHCB--TT-------TTH
T ss_pred ecCcHHHHHHHHHHhcCCC-CCCCcchhh
Confidence 4455889999999999888 679998875
No 244
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.84 E-value=53 Score=23.59 Aligned_cols=15 Identities=47% Similarity=0.543 Sum_probs=13.0
Q ss_pred hHHHHHhHhhccccc
Q 024174 75 SLVLTCALGIMSFSS 89 (271)
Q Consensus 75 SlaL~C~Lgiig~s~ 89 (271)
||.|--+||+|++|.
T Consensus 6 sllLlfflG~ISlSl 20 (46)
T PF03032_consen 6 SLLLLFFLGTISLSL 20 (46)
T ss_pred HHHHHHHHHHcccch
Confidence 788889999999885
No 245
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.08 E-value=4.8e+02 Score=23.53 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH-hcch--HHHhhhhhh---cccCCCCCCCCchhHHHH
Q 024174 167 QMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY-QGKY--REALECNCL---KDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 167 L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~-qGk~--~EAL~~~~L---~~e~~~p~D~R~~L~k~I 238 (271)
+.+.++.++.++.+|.||++ ++|-++... +|+. .++.+|.|- ......+.+..|++-|.+
T Consensus 17 l~~y~gd~~~~~~IEaAYD~------------ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~~~ 82 (194)
T PF11833_consen 17 LAQYAGDEKSREAIEAAYDA------------ILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQRL 82 (194)
T ss_pred HHHhcCCHHHHHHHHHHHHH------------HHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHHhc
Confidence 34446778899999999974 466666665 4665 677777766 111112344555555544
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=21.61 E-value=3.3e+02 Score=26.12 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
+..+...|..+-..|..|.+.++|+.-++ .+|-++. ....+.+.+...|+...|.. |.+|.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~-~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE---LDPYDEP-AYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCccchH-HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566778888888889999999886654 3443322 34567788888999999999 887765
No 247
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.96 E-value=1.8e+02 Score=29.33 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcchHHHhh-hh--hhcccCC----CCCCCCchhHHHHHHHhhCh-HHHHHHHHH
Q 024174 199 MALVEILIYQGKYREALE-CN--CLKDEQR----IPSDGRFPFYKAIIYTMLNM-EEAKKWWEE 254 (271)
Q Consensus 199 mllvEilI~qGk~~EAL~-~~--~L~~e~~----~p~D~R~~L~k~IIYtmL~k-~EA~k~we~ 254 (271)
+-|..+|+.-|+|..|++ .+ +|.+..+ .+--...+-|=|+=|-||++ .+|-+.|..
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999998 33 4433321 23446778899999999999 999998875
No 248
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=20.10 E-value=35 Score=34.86 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC--CCc
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD--GRF 232 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D--~R~ 232 (271)
....+-..|..+...|+.+.|..+|+.--. -.=.++.--+..++.+++...+|++++|+. .+.+.... +|.+ .|.
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~-~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~-l~~~~~~~~ 100 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDP-QQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQ-LPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhccc-ccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCccc-CCHHHHHHH
Confidence 345566778888899999999999984432 111244455678999999999999999997 43322222 2333 667
Q ss_pred hhHHHHHHHhhCh-HHHHHH
Q 024174 233 PFYKAIIYTMLNM-EEAKKW 251 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~ 251 (271)
+..+|-+|...+. -+|-+.
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~ 120 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARE 120 (536)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhcCCHHHHHHH
Confidence 7778999998887 444443
No 249
>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle. This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028.
Probab=20.07 E-value=1.7e+02 Score=25.24 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcC
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE 190 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e 190 (271)
+..+...||+.|+...|.+++.+|++..+..
T Consensus 21 v~~lin~lM~~GKK~~A~kI~~~al~~i~~~ 51 (154)
T TIGR01029 21 LNKFINRVMKDGKKSLAESIVYKAFERIAKK 51 (154)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999887654
Done!