Query 024174
Match_columns 271
No_of_seqs 33 out of 35
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lni_A Stress-induced-phosphop 98.7 1E-07 3.5E-12 68.6 9.3 104 151-260 10-115 (133)
2 1elw_A TPR1-domain of HOP; HOP 98.6 3.8E-07 1.3E-11 63.8 9.4 100 155-260 2-103 (118)
3 3sz7_A HSC70 cochaperone (SGT) 98.6 3.8E-07 1.3E-11 70.7 10.2 101 154-260 8-110 (164)
4 2dba_A Smooth muscle cell asso 98.6 5.2E-07 1.8E-11 66.3 10.4 102 154-260 25-130 (148)
5 3upv_A Heat shock protein STI1 98.6 3E-07 1E-11 67.9 9.1 98 156-259 3-102 (126)
6 2xcb_A PCRH, regulatory protei 98.6 3.6E-07 1.2E-11 69.8 9.6 101 154-260 15-117 (142)
7 2vgx_A Chaperone SYCD; alterna 98.5 5.8E-07 2E-11 70.5 10.5 101 155-261 19-121 (148)
8 4gco_A Protein STI-1; structur 98.5 7.5E-07 2.6E-11 68.3 10.1 100 155-260 11-112 (126)
9 2vyi_A SGTA protein; chaperone 98.5 9.7E-07 3.3E-11 62.6 10.0 100 155-260 10-111 (131)
10 2xev_A YBGF; tetratricopeptide 98.5 6.6E-07 2.2E-11 65.2 9.3 97 160-261 5-108 (129)
11 3gyz_A Chaperone protein IPGC; 98.5 6.4E-07 2.2E-11 72.3 9.9 102 154-261 33-136 (151)
12 3rkv_A Putative peptidylprolyl 98.5 4.2E-07 1.4E-11 70.3 8.1 104 155-260 9-128 (162)
13 3q49_B STIP1 homology and U bo 98.5 5.7E-07 1.9E-11 66.2 8.2 101 155-261 7-109 (137)
14 2fbn_A 70 kDa peptidylprolyl i 98.4 1.8E-06 6.2E-11 68.8 10.1 103 156-260 37-153 (198)
15 1a17_A Serine/threonine protei 98.4 1.4E-06 5E-11 65.1 8.7 100 155-260 11-112 (166)
16 2kck_A TPR repeat; tetratricop 98.3 2.7E-06 9.2E-11 59.1 8.4 96 159-260 8-108 (112)
17 1na0_A Designed protein CTPR3; 98.3 7.1E-06 2.4E-10 57.6 10.0 98 157-260 9-108 (125)
18 1elr_A TPR2A-domain of HOP; HO 98.3 2.7E-06 9.2E-11 60.5 7.7 99 156-260 3-110 (131)
19 3uq3_A Heat shock protein STI1 98.2 6.2E-06 2.1E-10 65.3 9.3 99 155-259 137-237 (258)
20 3ieg_A DNAJ homolog subfamily 98.2 4.4E-06 1.5E-10 69.0 8.5 98 161-260 238-337 (359)
21 1hxi_A PEX5, peroxisome target 98.2 5.5E-06 1.9E-10 62.8 7.9 96 159-260 19-116 (121)
22 3urz_A Uncharacterized protein 98.2 4.1E-06 1.4E-10 68.3 7.3 99 156-260 3-119 (208)
23 3as5_A MAMA; tetratricopeptide 98.1 9.9E-06 3.4E-10 60.5 8.4 98 157-260 76-175 (186)
24 2q7f_A YRRB protein; TPR, prot 98.1 7.3E-06 2.5E-10 64.7 7.7 97 158-260 126-224 (243)
25 3as5_A MAMA; tetratricopeptide 98.1 2.1E-05 7.1E-10 58.7 9.6 99 156-260 41-141 (186)
26 1ihg_A Cyclophilin 40; ppiase 98.1 9.2E-06 3.1E-10 73.9 9.1 102 157-260 223-338 (370)
27 3vtx_A MAMA; tetratricopeptide 98.1 1E-05 3.5E-10 62.7 8.1 97 158-260 74-172 (184)
28 2fo7_A Synthetic consensus TPR 98.1 2.4E-05 8.1E-10 55.0 9.0 98 157-260 35-134 (136)
29 4i17_A Hypothetical protein; T 98.1 1.4E-05 4.6E-10 64.3 8.6 99 158-261 8-108 (228)
30 2ho1_A Type 4 fimbrial biogene 98.0 3.6E-05 1.2E-09 61.7 10.5 99 156-260 140-240 (252)
31 3hym_B Cell division cycle pro 98.0 2.9E-05 1E-09 63.7 9.9 102 157-260 193-301 (330)
32 2fo7_A Synthetic consensus TPR 98.0 3.9E-05 1.3E-09 53.9 9.1 95 160-260 4-100 (136)
33 2e2e_A Formate-dependent nitri 98.0 3.4E-05 1.2E-09 59.8 9.5 99 157-261 44-147 (177)
34 1xnf_A Lipoprotein NLPI; TPR, 98.0 5.3E-05 1.8E-09 60.9 10.9 101 155-261 41-143 (275)
35 2c2l_A CHIP, carboxy terminus 98.0 2.5E-05 8.5E-10 67.2 9.5 99 156-260 3-103 (281)
36 2q7f_A YRRB protein; TPR, prot 98.0 3.5E-05 1.2E-09 60.8 9.5 98 157-260 91-190 (243)
37 3ieg_A DNAJ homolog subfamily 98.0 2.5E-05 8.7E-10 64.4 8.8 99 156-260 2-102 (359)
38 1p5q_A FKBP52, FK506-binding p 98.0 3.6E-05 1.2E-09 68.1 10.3 104 155-260 145-261 (336)
39 1hh8_A P67PHOX, NCF-2, neutrop 98.0 2.4E-05 8.4E-10 61.5 8.3 98 156-262 5-104 (213)
40 2gw1_A Mitochondrial precursor 98.0 3.3E-05 1.1E-09 67.6 9.8 100 154-260 3-104 (514)
41 3qky_A Outer membrane assembly 98.0 4.9E-05 1.7E-09 62.6 10.3 104 155-261 13-129 (261)
42 3k9i_A BH0479 protein; putativ 98.0 3E-06 1E-10 62.6 2.7 88 170-260 3-92 (117)
43 2vq2_A PILW, putative fimbrial 97.9 4.3E-05 1.5E-09 59.2 9.0 99 158-260 77-178 (225)
44 2ho1_A Type 4 fimbrial biogene 97.9 3.9E-05 1.3E-09 61.5 8.9 100 157-260 105-206 (252)
45 3uq3_A Heat shock protein STI1 97.9 4.7E-05 1.6E-09 60.2 9.2 102 157-260 79-204 (258)
46 4eqf_A PEX5-related protein; a 97.9 3.1E-05 1.1E-09 65.9 8.7 99 156-260 212-312 (365)
47 1hh8_A P67PHOX, NCF-2, neutrop 97.9 6.6E-05 2.3E-09 59.0 9.9 98 157-260 37-152 (213)
48 2pl2_A Hypothetical conserved 97.9 1.6E-05 5.6E-10 65.1 6.6 92 156-254 117-210 (217)
49 2yhc_A BAMD, UPF0169 lipoprote 97.9 8.5E-05 2.9E-09 60.8 10.7 98 159-261 6-128 (225)
50 2xpi_A Anaphase-promoting comp 97.9 5.3E-05 1.8E-09 68.5 10.2 102 157-260 475-581 (597)
51 4ga2_A E3 SUMO-protein ligase 97.9 2.9E-05 9.9E-10 60.6 7.4 95 160-260 34-131 (150)
52 3nf1_A KLC 1, kinesin light ch 97.9 3.2E-05 1.1E-09 62.9 7.8 106 155-260 151-309 (311)
53 2y4t_A DNAJ homolog subfamily 97.9 3.3E-05 1.1E-09 67.1 8.2 98 161-260 261-360 (450)
54 2vq2_A PILW, putative fimbrial 97.9 7.9E-05 2.7E-09 57.7 9.4 98 159-260 44-144 (225)
55 1qqe_A Vesicular transport pro 97.9 5.3E-05 1.8E-09 64.7 9.1 102 157-260 117-230 (292)
56 4ga2_A E3 SUMO-protein ligase 97.9 6.1E-06 2.1E-10 64.4 2.9 87 168-260 8-96 (150)
57 3u4t_A TPR repeat-containing p 97.8 0.00013 4.4E-09 59.0 10.4 94 160-260 6-105 (272)
58 3cv0_A Peroxisome targeting si 97.8 6.7E-05 2.3E-09 61.5 8.7 100 156-261 171-272 (327)
59 1fch_A Peroxisomal targeting s 97.8 6E-05 2E-09 63.4 8.6 99 156-260 216-316 (368)
60 3qky_A Outer membrane assembly 97.8 0.00011 3.8E-09 60.5 10.0 102 157-261 52-180 (261)
61 3vtx_A MAMA; tetratricopeptide 97.8 0.00011 3.6E-09 56.9 9.2 99 156-260 38-138 (184)
62 2pl2_A Hypothetical conserved 97.8 7.2E-05 2.5E-09 61.2 8.4 98 156-259 38-148 (217)
63 3hym_B Cell division cycle pro 97.8 0.00015 5.3E-09 59.4 9.8 96 159-260 92-190 (330)
64 3u4t_A TPR repeat-containing p 97.8 6.9E-05 2.4E-09 60.6 7.6 96 160-258 40-137 (272)
65 2l6j_A TPR repeat-containing p 97.7 9.5E-06 3.2E-10 57.2 2.1 92 156-253 3-102 (111)
66 4i17_A Hypothetical protein; T 97.7 0.00012 4.3E-09 58.6 8.9 97 158-260 43-148 (228)
67 3edt_B KLC 2, kinesin light ch 97.7 5.6E-05 1.9E-09 60.2 6.4 106 155-260 83-200 (283)
68 3ro3_A PINS homolog, G-protein 97.7 7.4E-05 2.5E-09 54.1 6.6 106 155-260 7-120 (164)
69 3edt_B KLC 2, kinesin light ch 97.7 5.4E-05 1.8E-09 60.3 6.3 104 155-258 41-156 (283)
70 2y4t_A DNAJ homolog subfamily 97.7 0.00015 5.2E-09 62.9 9.5 100 155-260 24-125 (450)
71 3cv0_A Peroxisome targeting si 97.7 0.00014 4.7E-09 59.6 8.7 100 156-261 20-121 (327)
72 2kat_A Uncharacterized protein 97.7 5.6E-05 1.9E-09 55.0 5.5 80 175-260 3-84 (115)
73 2if4_A ATFKBP42; FKBP-like, al 97.7 3.3E-05 1.1E-09 68.6 5.0 103 156-260 178-295 (338)
74 4gyw_A UDP-N-acetylglucosamine 97.7 0.00014 4.7E-09 72.9 9.9 100 155-260 7-108 (723)
75 1xnf_A Lipoprotein NLPI; TPR, 97.7 1.9E-05 6.4E-10 63.6 3.0 90 169-260 17-108 (275)
76 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00012 4.1E-09 67.8 8.7 104 155-260 266-382 (457)
77 1a17_A Serine/threonine protei 97.7 0.00024 8E-09 52.9 8.7 99 157-261 47-149 (166)
78 3mkr_A Coatomer subunit epsilo 97.7 0.00017 5.9E-09 62.5 9.0 100 156-260 129-231 (291)
79 4gcn_A Protein STI-1; structur 97.6 0.0003 1E-08 53.5 9.2 98 157-260 8-114 (127)
80 2vsy_A XCC0866; transferase, g 97.6 0.00013 4.4E-09 67.9 8.4 99 156-260 22-122 (568)
81 3fp2_A TPR repeat-containing p 97.6 0.00025 8.6E-09 62.8 9.6 98 157-260 310-409 (537)
82 4eqf_A PEX5-related protein; a 97.6 0.00012 4E-09 62.4 7.0 97 158-260 66-164 (365)
83 1wao_1 Serine/threonine protei 97.6 3.7E-05 1.3E-09 72.1 4.2 95 160-260 9-105 (477)
84 1fch_A Peroxisomal targeting s 97.6 0.0003 1E-08 59.1 9.3 103 156-260 131-282 (368)
85 3nf1_A KLC 1, kinesin light ch 97.6 0.00015 5.3E-09 58.9 7.1 105 155-259 25-141 (311)
86 3urz_A Uncharacterized protein 97.6 0.00031 1.1E-08 57.1 8.8 75 163-243 60-135 (208)
87 4a1s_A PINS, partner of inscut 97.6 8.2E-05 2.8E-09 64.0 5.7 107 154-260 45-157 (411)
88 2vsy_A XCC0866; transferase, g 97.6 0.00026 9E-09 65.8 9.2 104 156-266 56-164 (568)
89 3mkr_A Coatomer subunit epsilo 97.5 0.00054 1.9E-08 59.4 10.5 97 155-260 63-161 (291)
90 2gw1_A Mitochondrial precursor 97.5 0.00035 1.2E-08 61.2 9.2 97 162-260 377-480 (514)
91 1w3b_A UDP-N-acetylglucosamine 97.5 0.00038 1.3E-08 59.9 9.3 97 158-260 272-370 (388)
92 3fp2_A TPR repeat-containing p 97.5 0.00035 1.2E-08 61.9 9.2 99 160-260 381-493 (537)
93 3ro3_A PINS homolog, G-protein 97.5 0.00025 8.4E-09 51.3 6.7 104 157-260 49-160 (164)
94 3ma5_A Tetratricopeptide repea 97.5 0.00011 3.8E-09 53.5 4.9 63 196-260 8-72 (100)
95 2xpi_A Anaphase-promoting comp 97.5 0.00057 2E-08 61.8 10.1 98 157-260 373-472 (597)
96 2kc7_A BFR218_protein; tetratr 97.5 0.00013 4.4E-09 51.3 4.7 86 162-260 5-92 (99)
97 3ro2_A PINS homolog, G-protein 97.5 0.00011 3.7E-09 59.4 4.6 104 157-260 5-114 (338)
98 2hr2_A Hypothetical protein; a 97.4 0.0005 1.7E-08 58.0 8.8 103 156-260 10-133 (159)
99 3gw4_A Uncharacterized protein 97.4 0.00079 2.7E-08 51.9 9.1 106 155-260 64-178 (203)
100 3sf4_A G-protein-signaling mod 97.4 0.0001 3.5E-09 62.2 4.1 105 156-260 8-118 (406)
101 2qfc_A PLCR protein; TPR, HTH, 97.4 0.00062 2.1E-08 57.6 8.9 104 156-259 154-267 (293)
102 1w3b_A UDP-N-acetylglucosamine 97.4 0.00074 2.5E-08 58.1 9.2 99 156-260 100-200 (388)
103 1na3_A Designed protein CTPR2; 97.4 0.00084 2.9E-08 45.6 7.7 82 156-243 8-90 (91)
104 2yhc_A BAMD, UPF0169 lipoprote 97.3 0.0024 8.2E-08 52.1 11.4 102 157-261 41-179 (225)
105 2kc7_A BFR218_protein; tetratr 97.3 0.0003 1E-08 49.4 5.2 61 198-260 3-66 (99)
106 4gyw_A UDP-N-acetylglucosamine 97.3 0.00063 2.1E-08 68.2 9.3 99 156-260 42-142 (723)
107 2pzi_A Probable serine/threoni 97.3 0.00054 1.9E-08 66.7 8.6 91 168-260 402-498 (681)
108 2ifu_A Gamma-SNAP; membrane fu 97.3 0.00045 1.5E-08 59.4 7.1 102 157-260 116-225 (307)
109 3ro2_A PINS homolog, G-protein 97.3 0.00033 1.1E-08 56.6 5.8 104 157-260 223-334 (338)
110 4abn_A Tetratricopeptide repea 97.3 0.00037 1.3E-08 64.5 6.9 97 158-260 171-289 (474)
111 3gw4_A Uncharacterized protein 97.3 0.00039 1.3E-08 53.6 6.0 103 156-260 25-138 (203)
112 2vyi_A SGTA protein; chaperone 97.3 0.00093 3.2E-08 47.0 7.4 83 157-245 46-129 (131)
113 3gyz_A Chaperone protein IPGC; 97.3 0.0003 1E-08 56.6 5.4 64 195-260 36-101 (151)
114 3qou_A Protein YBBN; thioredox 97.3 0.001 3.5E-08 57.1 9.1 101 156-260 116-250 (287)
115 4abn_A Tetratricopeptide repea 97.3 0.00063 2.2E-08 63.0 8.0 98 156-260 136-252 (474)
116 3qou_A Protein YBBN; thioredox 97.2 0.00045 1.6E-08 59.3 6.3 96 156-254 150-280 (287)
117 3q15_A PSP28, response regulat 97.2 0.00073 2.5E-08 59.0 7.5 104 156-261 181-293 (378)
118 1na3_A Designed protein CTPR2; 97.2 0.00045 1.6E-08 46.9 4.8 63 196-260 10-74 (91)
119 2kck_A TPR repeat; tetratricop 97.1 0.00034 1.2E-08 48.3 3.8 63 196-260 7-71 (112)
120 2qfc_A PLCR protein; TPR, HTH, 97.1 0.0022 7.6E-08 54.2 9.5 104 155-258 73-184 (293)
121 2l6j_A TPR repeat-containing p 97.1 0.00059 2E-08 47.9 4.8 61 198-260 7-69 (111)
122 2lni_A Stress-induced-phosphop 97.1 0.0016 5.5E-08 46.4 7.1 83 156-244 49-132 (133)
123 2h6f_A Protein farnesyltransfe 97.1 0.0006 2.1E-08 62.7 6.1 97 158-260 132-231 (382)
124 3k9i_A BH0479 protein; putativ 97.1 0.00085 2.9E-08 49.3 5.7 85 155-245 25-110 (117)
125 4a1s_A PINS, partner of inscut 97.1 0.0012 4E-08 56.8 7.3 100 160-259 266-373 (411)
126 2h6f_A Protein farnesyltransfe 97.1 0.0016 5.4E-08 59.9 8.6 100 155-260 95-197 (382)
127 3u3w_A Transcriptional activat 97.1 0.0015 5.2E-08 55.3 7.7 106 155-260 153-268 (293)
128 3sf4_A G-protein-signaling mod 97.1 0.00086 2.9E-08 56.6 6.1 105 156-260 186-298 (406)
129 1p5q_A FKBP52, FK506-binding p 97.0 0.0019 6.6E-08 57.0 8.5 94 157-256 196-292 (336)
130 2e2e_A Formate-dependent nitri 97.0 0.00031 1E-08 54.3 2.8 88 167-260 20-112 (177)
131 3u3w_A Transcriptional activat 97.0 0.0023 8E-08 54.1 8.4 106 154-259 72-185 (293)
132 3ulq_A Response regulator aspa 97.0 0.0018 6.2E-08 56.2 7.6 105 156-260 183-295 (383)
133 2xev_A YBGF; tetratricopeptide 96.8 0.0018 6.2E-08 46.7 5.5 62 198-261 5-71 (129)
134 2r5s_A Uncharacterized protein 96.8 0.0021 7.3E-08 50.2 6.2 98 156-260 39-139 (176)
135 2xcb_A PCRH, regulatory protei 96.8 0.001 3.5E-08 50.5 4.2 63 196-260 19-83 (142)
136 1na0_A Designed protein CTPR3; 96.8 0.0052 1.8E-07 42.7 7.6 80 157-242 43-123 (125)
137 2pzi_A Probable serine/threoni 96.8 0.0017 5.9E-08 63.2 6.7 98 156-260 432-531 (681)
138 2fbn_A 70 kDa peptidylprolyl i 96.8 0.0033 1.1E-07 49.8 6.9 86 158-249 89-176 (198)
139 1qqe_A Vesicular transport pro 96.8 0.0024 8.3E-08 54.4 6.6 104 156-261 76-190 (292)
140 3upv_A Heat shock protein STI1 96.8 0.0017 5.9E-08 47.5 4.9 60 199-260 8-69 (126)
141 1hxi_A PEX5, peroxisome target 96.7 0.0017 5.7E-08 49.0 4.9 61 198-260 20-82 (121)
142 4g1t_A Interferon-induced prot 96.7 0.0049 1.7E-07 54.1 8.5 100 161-260 55-169 (472)
143 4gcn_A Protein STI-1; structur 96.7 0.0011 3.7E-08 50.3 3.7 59 200-260 13-73 (127)
144 2vgx_A Chaperone SYCD; alterna 96.7 0.0022 7.7E-08 49.9 5.6 64 195-260 21-86 (148)
145 1elw_A TPR1-domain of HOP; HOP 96.7 0.0024 8.1E-08 44.2 5.1 62 197-260 6-69 (118)
146 3sz7_A HSC70 cochaperone (SGT) 96.7 0.002 6.7E-08 49.6 5.1 64 195-260 11-76 (164)
147 4gco_A Protein STI-1; structur 96.6 0.002 6.9E-08 49.0 4.6 59 200-260 18-78 (126)
148 3q49_B STIP1 homology and U bo 96.6 0.0026 9E-08 46.3 4.9 63 196-260 10-74 (137)
149 4g1t_A Interferon-induced prot 96.6 0.0021 7.2E-08 56.5 5.0 99 160-260 178-278 (472)
150 1ouv_A Conserved hypothetical 96.6 0.0099 3.4E-07 48.8 8.7 90 157-256 6-105 (273)
151 2r5s_A Uncharacterized protein 96.5 0.0031 1.1E-07 49.3 5.1 95 159-260 8-105 (176)
152 3n71_A Histone lysine methyltr 96.4 0.0076 2.6E-07 57.9 8.2 112 151-262 296-430 (490)
153 1hz4_A MALT regulatory protein 96.4 0.0038 1.3E-07 53.5 5.3 103 158-260 54-166 (373)
154 1hz4_A MALT regulatory protein 96.3 0.025 8.4E-07 48.4 10.1 104 157-260 93-205 (373)
155 1kt0_A FKBP51, 51 kDa FK506-bi 96.3 0.018 6.3E-07 53.1 9.9 89 157-251 317-407 (457)
156 1elr_A TPR2A-domain of HOP; HO 96.3 0.004 1.4E-07 43.8 4.2 62 197-260 6-69 (131)
157 1ihg_A Cyclophilin 40; ppiase 96.3 0.0073 2.5E-07 54.8 7.0 91 156-252 272-364 (370)
158 2dba_A Smooth muscle cell asso 96.3 0.0057 1.9E-07 44.4 5.1 64 195-260 28-96 (148)
159 2ond_A Cleavage stimulation fa 96.3 0.032 1.1E-06 47.5 10.4 99 157-260 99-200 (308)
160 3ulq_A Response regulator aspa 96.2 0.0064 2.2E-07 52.8 6.0 101 157-260 264-370 (383)
161 3qww_A SET and MYND domain-con 96.1 0.014 4.9E-07 55.2 8.2 112 151-262 285-419 (433)
162 3q15_A PSP28, response regulat 96.1 0.013 4.4E-07 51.0 7.0 105 155-259 139-252 (378)
163 4b4t_Q 26S proteasome regulato 96.0 0.021 7E-07 49.5 8.1 93 168-260 106-206 (434)
164 1wao_1 Serine/threonine protei 95.9 0.01 3.6E-07 55.5 6.2 95 157-257 40-138 (477)
165 2ifu_A Gamma-SNAP; membrane fu 95.9 0.008 2.7E-07 51.6 4.9 102 156-260 75-186 (307)
166 1ouv_A Conserved hypothetical 95.9 0.033 1.1E-06 45.6 8.5 90 158-257 39-142 (273)
167 1zu2_A Mitochondrial import re 95.9 0.0092 3.1E-07 50.3 5.1 87 172-260 17-122 (158)
168 2if4_A ATFKBP42; FKBP-like, al 95.8 0.017 5.7E-07 51.2 6.8 96 159-260 232-330 (338)
169 3ma5_A Tetratricopeptide repea 95.6 0.033 1.1E-06 40.1 6.5 62 156-221 6-68 (100)
170 2kat_A Uncharacterized protein 95.5 0.027 9.2E-07 40.6 5.6 74 156-235 18-92 (115)
171 4f3v_A ESX-1 secretion system 95.4 0.021 7.3E-07 51.8 6.2 101 155-260 134-239 (282)
172 4b4t_Q 26S proteasome regulato 95.4 0.077 2.6E-06 45.9 9.3 103 157-259 135-246 (434)
173 2ooe_A Cleavage stimulation fa 95.4 0.08 2.7E-06 48.5 9.8 100 156-260 320-422 (530)
174 2ond_A Cleavage stimulation fa 95.2 0.094 3.2E-06 44.6 9.1 87 169-260 69-165 (308)
175 3mv2_B Coatomer subunit epsilo 95.2 0.03 1E-06 51.6 6.2 95 157-260 71-167 (310)
176 3bee_A Putative YFRE protein; 95.0 0.029 1E-06 41.9 4.8 71 156-232 5-79 (93)
177 3qwp_A SET and MYND domain-con 95.0 0.042 1.4E-06 51.5 6.9 106 157-262 287-408 (429)
178 2v5f_A Prolyl 4-hydroxylase su 94.8 0.048 1.7E-06 40.3 5.5 69 162-232 10-82 (104)
179 3mv2_B Coatomer subunit epsilo 94.8 0.044 1.5E-06 50.4 6.3 95 161-260 104-209 (310)
180 3bee_A Putative YFRE protein; 94.4 0.21 7.2E-06 37.2 8.2 65 195-261 6-75 (93)
181 3rkv_A Putative peptidylprolyl 94.4 0.023 7.9E-07 43.4 2.9 69 156-230 62-131 (162)
182 2c2l_A CHIP, carboxy terminus 94.0 0.048 1.6E-06 46.6 4.4 62 197-260 6-69 (281)
183 4f3v_A ESX-1 secretion system 92.8 0.072 2.5E-06 48.3 3.7 92 159-256 104-198 (282)
184 1zbp_A Hypothetical protein VP 91.3 0.2 6.7E-06 46.1 4.7 57 164-224 4-61 (273)
185 2ooe_A Cleavage stimulation fa 91.1 0.31 1.1E-05 44.6 5.9 91 164-260 363-456 (530)
186 2ff4_A Probable regulatory pro 90.6 1.1 3.6E-05 41.3 9.0 100 159-260 117-236 (388)
187 3qww_A SET and MYND domain-con 90.0 0.61 2.1E-05 44.0 7.0 70 148-219 333-407 (433)
188 3rjv_A Putative SEL1 repeat pr 89.5 0.85 2.9E-05 36.9 6.6 12 172-183 68-79 (212)
189 3rjv_A Putative SEL1 repeat pr 89.4 0.81 2.8E-05 37.0 6.5 91 156-257 17-117 (212)
190 3n71_A Histone lysine methyltr 88.8 0.82 2.8E-05 43.8 7.0 108 148-259 344-465 (490)
191 2xm6_A Protein corresponding t 88.1 1.9 6.3E-05 39.0 8.5 77 170-256 92-178 (490)
192 3qwp_A SET and MYND domain-con 87.6 1.4 4.7E-05 41.3 7.6 72 146-219 320-396 (429)
193 1pc2_A Mitochondria fission pr 86.9 0.73 2.5E-05 38.6 4.7 67 156-224 31-101 (152)
194 4b4t_R RPN7, 26S proteasome re 86.7 1 3.4E-05 42.0 6.1 90 160-253 134-232 (429)
195 2xm6_A Protein corresponding t 86.1 2.8 9.5E-05 37.8 8.5 88 160-257 114-215 (490)
196 2hr2_A Hypothetical protein; a 85.6 0.76 2.6E-05 38.5 4.2 58 199-258 15-86 (159)
197 3ly7_A Transcriptional activat 84.7 0.76 2.6E-05 43.6 4.2 73 160-239 280-353 (372)
198 3txn_A 26S proteasome regulato 83.7 2.1 7.3E-05 40.5 6.8 91 162-252 104-204 (394)
199 4g26_A Pentatricopeptide repea 83.5 7.6 0.00026 36.8 10.6 94 160-259 108-205 (501)
200 1pc2_A Mitochondria fission pr 83.4 1.5 5E-05 36.7 5.0 86 174-260 11-102 (152)
201 3e4b_A ALGK; tetratricopeptide 83.3 4.1 0.00014 37.2 8.4 86 163-254 147-242 (452)
202 3e4b_A ALGK; tetratricopeptide 81.9 1.8 6.3E-05 39.5 5.5 90 159-255 178-277 (452)
203 3ffl_A Anaphase-promoting comp 81.0 7.6 0.00026 33.2 8.6 66 151-216 57-143 (167)
204 1klx_A Cysteine rich protein B 80.5 4.2 0.00014 31.0 6.3 86 163-258 31-126 (138)
205 1zu2_A Mitochondrial import re 78.8 1.7 5.9E-05 36.3 3.8 72 156-229 35-124 (158)
206 1nzn_A CGI-135 protein, fissio 77.9 3.3 0.00011 33.7 5.2 64 158-224 36-104 (126)
207 1dce_A Protein (RAB geranylger 77.6 4.3 0.00015 39.2 6.8 91 165-261 115-224 (567)
208 3dra_A Protein farnesyltransfe 77.6 16 0.00055 32.7 10.1 100 155-260 30-141 (306)
209 4g26_A Pentatricopeptide repea 75.3 11 0.00037 35.8 8.8 55 200-257 110-168 (501)
210 1y8m_A FIS1; mitochondria, unk 75.1 8.2 0.00028 32.4 7.0 67 158-229 40-110 (144)
211 1dce_A Protein (RAB geranylger 74.1 5.8 0.0002 38.2 6.7 42 211-254 125-169 (567)
212 3o48_A Mitochondria fission 1 73.0 10 0.00034 31.5 6.9 67 158-229 41-111 (134)
213 4b4t_P 26S proteasome regulato 72.6 11 0.00038 35.3 8.1 95 158-253 138-242 (445)
214 3dra_A Protein farnesyltransfe 70.0 12 0.0004 33.6 7.2 86 172-260 84-177 (306)
215 1klx_A Cysteine rich protein B 65.7 7.1 0.00024 29.7 4.3 74 172-257 10-89 (138)
216 4gns_B Protein CSD3, chitin bi 64.3 12 0.00042 38.3 6.9 78 172-251 300-393 (754)
217 2v5f_A Prolyl 4-hydroxylase su 63.8 11 0.00036 27.4 4.8 62 199-260 9-77 (104)
218 3spa_A Mtrpol, DNA-directed RN 62.5 25 0.00084 38.1 8.9 92 159-256 129-228 (1134)
219 4b4t_P 26S proteasome regulato 58.9 16 0.00055 34.2 6.2 76 168-245 188-272 (445)
220 2ff4_A Probable regulatory pro 58.4 25 0.00087 32.1 7.3 80 157-240 171-256 (388)
221 4e6h_A MRNA 3'-END-processing 55.9 47 0.0016 33.1 9.3 86 171-261 484-573 (679)
222 3ly7_A Transcriptional activat 54.9 31 0.0011 32.6 7.4 58 200-260 282-341 (372)
223 3q7a_A Farnesyltransferase alp 52.5 67 0.0023 29.6 9.2 100 155-260 51-156 (349)
224 1xi4_A Clathrin heavy chain; a 51.1 49 0.0017 37.2 9.1 87 155-253 1132-1245(1630)
225 3ph0_C ASCG; type III secretio 51.1 23 0.0008 26.0 4.6 26 190-215 35-60 (61)
226 3dss_A Geranylgeranyl transfer 46.3 79 0.0027 28.8 8.5 46 211-258 126-174 (331)
227 1y8m_A FIS1; mitochondria, unk 44.4 40 0.0014 28.2 5.7 84 174-260 19-108 (144)
228 2uwj_G Type III export protein 40.9 32 0.0011 28.0 4.4 21 196-216 40-60 (115)
229 2p58_C Putative type III secre 40.6 32 0.0011 28.1 4.3 21 196-216 41-61 (116)
230 3ffl_A Anaphase-promoting comp 39.9 47 0.0016 28.3 5.6 54 166-219 29-88 (167)
231 3bu8_A Telomeric repeat-bindin 39.4 86 0.003 28.3 7.4 78 157-238 113-199 (235)
232 3vu7_H DNA repair protein REV1 39.0 93 0.0032 25.1 6.9 62 117-190 32-93 (124)
233 4fjo_A DNA repair protein REV1 38.7 1E+02 0.0035 23.5 6.9 62 117-190 5-66 (97)
234 3dss_A Geranylgeranyl transfer 37.6 54 0.0019 29.9 6.0 83 172-260 125-224 (331)
235 4e6h_A MRNA 3'-END-processing 37.0 1.3E+02 0.0044 30.0 9.0 97 162-260 383-501 (679)
236 2b7e_A PRE-mRNA processing pro 36.2 49 0.0017 23.9 4.3 46 212-257 3-57 (59)
237 1xi4_A Clathrin heavy chain; a 34.6 84 0.0029 35.4 7.7 43 159-202 987-1029(1630)
238 4gns_B Protein CSD3, chitin bi 34.5 71 0.0024 32.8 6.8 53 160-216 340-392 (754)
239 3q7a_A Farnesyltransferase alp 34.5 62 0.0021 29.9 5.9 84 172-260 104-198 (349)
240 3o48_A Mitochondria fission 1 33.9 55 0.0019 27.0 4.9 84 174-260 20-109 (134)
241 2crb_A Nuclear receptor bindin 32.6 44 0.0015 26.5 3.9 64 160-223 18-91 (97)
242 3mkq_A Coatomer beta'-subunit; 32.0 97 0.0033 29.0 6.8 60 158-219 630-706 (814)
243 3txn_A 26S proteasome regulato 31.9 2.3E+02 0.0079 26.5 9.4 87 171-258 73-168 (394)
244 1nzn_A CGI-135 protein, fissio 30.8 68 0.0023 25.9 4.9 85 175-260 15-105 (126)
245 3hdx_A SUSD homolog, SUSD supe 30.5 55 0.0019 30.6 4.9 26 197-222 199-225 (478)
246 4b4t_R RPN7, 26S proteasome re 30.1 58 0.002 30.1 4.9 87 174-261 107-200 (429)
247 2wpv_A GET4, UPF0363 protein Y 25.1 1.3E+02 0.0043 27.6 6.2 55 155-209 31-87 (312)
248 4b4t_O 26S proteasome regulato 23.4 2E+02 0.0069 26.3 7.3 49 168-216 87-148 (393)
249 1b89_A Protein (clathrin heavy 22.1 1.2E+02 0.0042 29.2 5.7 86 160-250 210-303 (449)
250 1b89_A Protein (clathrin heavy 22.1 2.2E+02 0.0076 27.4 7.5 23 159-181 124-146 (449)
251 3rjo_A Endoplasmic reticulum a 22.0 98 0.0034 28.3 4.8 65 192-259 194-265 (419)
252 3lew_A SUSD-like carbohydrate 21.2 90 0.0031 29.4 4.5 26 197-222 205-231 (495)
253 3lpz_A GET4 (YOR164C homolog); 21.2 1.3E+02 0.0044 28.0 5.5 53 157-209 35-89 (336)
254 3mcx_A SUSD superfamily protei 20.2 1.2E+02 0.0042 28.1 5.2 27 196-222 203-230 (477)
No 1
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=1e-07 Score=68.65 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=89.2
Q ss_pred CCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174 151 GPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD 229 (271)
Q Consensus 151 ~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D 229 (271)
.+....+.++...+..+...|+.++|++.++++++. ++. ...+-..++.++..+|+|++|++ ++...+.+ |.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~ 83 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTF 83 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTC
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCc
Confidence 334467889999999999999999999999999863 232 24567788999999999999999 66777666 899
Q ss_pred CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...++..|.+|.-+++ ++|.++|++..++.|
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999 999999999998876
No 2
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=3.8e-07 Score=63.83 Aligned_cols=100 Identities=25% Similarity=0.205 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
+.+..+...+..+...|+.++|++.++++++.. |. ...+...++.++..+|+|++|+. ++...+.+ |.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 75 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLD---PH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGY 75 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHH
Confidence 356678889999999999999999999998753 32 24567778999999999999999 77777666 8899999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...|.+|.-+++ ++|.++|++..++.|
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999 999999999998877
No 3
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=3.8e-07 Score=70.69 Aligned_cols=101 Identities=13% Similarity=0.006 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
.++...+...+..+...|++++|++.++++++...+ ...+-..++.++..+|+|++|+. |+...+.+ |.+...
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 81 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKA 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHH
Confidence 367888999999999999999999999999975432 24567778999999999999999 77777777 899999
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
++..|.+|.-+++ ++|.++|++..++.|
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999 999999999999988
No 4
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=5.2e-07 Score=66.27 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~ 230 (271)
..+...+...+..+...|++++|++.++++++. ++.. ...+...++.++..+|+|++|+. |+...+.+ |.+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 99 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDV 99 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCH
Confidence 356788899999999999999999999999853 3332 35677788999999999999999 77777666 8899
Q ss_pred CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..++..|.+|..+++ ++|.++|++..++.|
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999 999999999999887
No 5
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3e-07 Score=67.89 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+...+...+..+...|++++|++.++++++.. |.. ..+-..++.++..+|+|++|+. |+.....+ |.+...++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 76 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 45668889999999999999999999999754 322 3567778999999999999999 77777777 99999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
..|.+|..+++ ++|.++|++..++.
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999 99999999999988
No 6
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=3.6e-07 Score=69.83 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
.++...+-..+..+...|++++|.+.++.+++. +|.. ..+-..++.++..+|+|++|+. |+.....+ |.|...
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 88 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHH
Confidence 367888999999999999999999999998863 4432 3455678899999999999999 77777777 999999
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
++..|.+|..+++ ++|.++|++..++.|
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999 999999999999887
No 7
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=5.8e-07 Score=70.55 Aligned_cols=101 Identities=18% Similarity=0.085 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
++...+-..+..+...|++++|++.++.+++. +|.. ..+-..++.++..+|+|++|+. |+....-+ |.|.+.+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~ 92 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---Cccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHH
Confidence 56778889999999999999999999998864 3332 3344678899999999999999 77777777 9999999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
+..|.+|.-+++ +||.++|++..++.|.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999 9999999999999883
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=7.5e-07 Score=68.32 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
+.....+.....+.+.|++++|++.+++|++. +|.. ..+-..++.++..+|+|++|+. |+...+-+ |.+...+
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~ 84 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHH
Confidence 56677889999999999999999999999964 3322 3455678899999999999999 77766666 8999999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+..|.+|..+++ +||.++|++-.++-|
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 999999999999 999999999999887
No 9
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=9.7e-07 Score=62.58 Aligned_cols=100 Identities=21% Similarity=0.159 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
.+...+...+..+...|+.++|++.++++++.. +. ...+...++.++..+|+|++|++ ++...+.+ |.+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 83 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHH
Confidence 456678889999999999999999999998753 32 24567788999999999999999 66777666 8899999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+..|.+|..+++ ++|.++|++-.++.|
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999 999999999998877
No 10
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=6.6e-07 Score=65.18 Aligned_cols=97 Identities=19% Similarity=0.076 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCccc--chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---CCch
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAY--NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---GRFP 233 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeay--nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~R~~ 233 (271)
+-..|..+...|++++|++.++.+++. +|...+ ++...+++++..+|+|++|++ ++.+.+.+ |.+ ...+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~ 79 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHH
Confidence 456788899999999999999988864 343333 677889999999999999999 77877776 777 5558
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
+..|.+|.-+++ ++|.++|++..+..|.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 899999999999 9999999999998883
No 11
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=6.4e-07 Score=72.32 Aligned_cols=102 Identities=16% Similarity=0.088 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
.++.+.+-.++..+...|++++|++.++.+++. +|.. ..+-..++.++..+|+|++|+. |+....-+ |.|...
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~ 106 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYN-VDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHH
Confidence 368888999999999999999999999999864 4432 3355678899999999999999 77777777 999999
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
++..|.+|..+++ +||.++|++-.++.|.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999 9999999999999883
No 12
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.49 E-value=4.2e-07 Score=70.33 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-----CCc---------ccchHHHHHHHHHHhcchHHHhh-hhh
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-----PEP---------AYNVEMALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-----~ee---------aynirmllvEilI~qGk~~EAL~-~~~ 219 (271)
+....++..+..+.+.|++++|++..++|++.+... +.+ ...+-.-++.+++.+|+|++|+. |+.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 457789999999999999999999999999885431 211 12456678899999999999999 777
Q ss_pred hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 220 LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 220 L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...-+ |.+...++..|.+|..+++ ++|.++|++..++-|
T Consensus 89 al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 89 VLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 77667 9999999999999999999 999999999999887
No 13
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=5.7e-07 Score=66.16 Aligned_cols=101 Identities=10% Similarity=0.009 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
.+...+...+..+...|++++|++.++.+++.. |. ...+...++.++..+|+|++|+. ++.....+ |.+.+.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 80 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAH 80 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHH
Confidence 456778999999999999999999999999754 32 24577788999999999999999 77777666 8999999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
+..|.+|..+++ ++|.++|++..++.|.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999 9999999999998884
No 14
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=1.8e-06 Score=68.82 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cc-----------cchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PA-----------YNVEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e-ea-----------ynirmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
....+...+..+...|++++|++.++++++...+++. .. ..+-..++.++..+|+|++|+. |+...+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4566889999999999999999999999987655541 11 2566778999999999999999 776666
Q ss_pred cCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 223 EQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 223 e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+ |.+.+.++..|.+|..+++ ++|.++|++..++-|
T Consensus 117 ~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 117 ID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 66 8999999999999999999 999999999999877
No 15
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=1.4e-06 Score=65.08 Aligned_cols=100 Identities=13% Similarity=-0.010 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
+....+...+......|+.++|.+.++++++.... ...+-..++.++..+|+|++|+. ++...+.+ |.+...+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~ 84 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHH
Confidence 44666888899999999999999999999875322 24566778889999999999999 66777666 8888899
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+..|.+|.-+++ ++|.++|++..++.|
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999 999999999988877
No 16
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=2.7e-06 Score=59.11 Aligned_cols=96 Identities=18% Similarity=0.060 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC--CCCchhH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS--DGRFPFY 235 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~--D~R~~L~ 235 (271)
.....+..+...|+.++|.+.++++++.. +. ...+...++.++..+|+|++|++ +++..+.+ |. +...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD---PE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 35567888889999999999999998753 32 23456788999999999999999 66777666 78 8888999
Q ss_pred HHHHHHhh-Ch-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTML-NM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL-~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|..+ ++ ++|.++|++..+..|
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999999 99 999999999998888
No 17
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.29 E-value=7.1e-06 Score=57.59 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
...+...+..+...|+.++|++.++++++.. +. ...+-..+++++..+|++++|++ ++...+.+ |.+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHH
Confidence 4556778888899999999999999998753 22 23456778999999999999999 66776666 888888899
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|..+++ ++|.++|++..++.|
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 9999999999 999999999988877
No 18
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=2.7e-06 Score=60.49 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-----
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD----- 229 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D----- 229 (271)
....+..++......|+.++|++.++++++.. +. ...+...++.++..+|+|++|+. ++...+.. |.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD---PT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---Cc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHH
Confidence 44567788889999999999999999998754 22 23566788999999999999999 66555443 444
Q ss_pred --CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 --GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 --~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.++..|.+|..+++ ++|.++|++..++-|
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7778889999999999 999999999988766
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=6.2e-06 Score=65.28 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
++.......+..+...|+.++|++.++++++.... ...+-..++.+++.+|+|++|++ ++...+.+ |.+...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~ 210 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAY 210 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHH
Confidence 45666788899999999999999999999975422 23567788999999999999999 77777666 8999999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
+..|.+|..+++ ++|.++|++..++.
T Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 211 IRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999 99999999999887
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.21 E-value=4.4e-06 Score=68.96 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=83.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII 239 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II 239 (271)
...|..+...|+.++|++.++++++...+++.....+-..+++++..+|+|++|+. ++...+.+ |.+...++..|.+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 34588899999999999999999976544333333455678999999999999999 77777766 8999999999999
Q ss_pred HHhhCh-HHHHHHHHHHHhhcC
Q 024174 240 YTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 240 YtmL~k-~EA~k~we~f~~lv~ 260 (271)
|..+++ ++|.++|++-.++-|
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 999999 999999999999887
No 21
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=5.5e-06 Score=62.84 Aligned_cols=96 Identities=17% Similarity=-0.000 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
..-..+..+...|+.++|++.++.+++. +|.. ...-..++.++..+|++++|+. ++.....+ |.+...++..|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 4667888999999999999999999863 4432 3456778999999999999999 77777777 99999999999
Q ss_pred HHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 238 IIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 238 IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+|..+++ +||.++|++..++-|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999 999999999988877
No 22
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.17 E-value=4.1e-06 Score=68.27 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHH----------------HHHHHHHhcchHHHhh-hh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMA----------------LVEILIYQGKYREALE-CN 218 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirml----------------lvEilI~qGk~~EAL~-~~ 218 (271)
.++.+...+..+...|++++|++.++++++.--++++ +... ++.++..+|+|++|+. |+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE----MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH----HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4667888899999999999999999999864322211 2223 8899999999999999 77
Q ss_pred hhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 219 CLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 219 ~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...+.+ |.|...++-.|.+|..+++ ++|.++|++-.++-|
T Consensus 79 ~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 79 ELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 877777 9999999999999999999 999999999999887
No 23
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.14 E-value=9.9e-06 Score=60.48 Aligned_cols=98 Identities=24% Similarity=0.283 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.......+..+...|+.++|.+.++++++.... ...+...+++++..+|++++|+. +++..+.+ |.+...+..
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 149 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRA 149 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHH
Confidence 345667777888889999999999888865322 23566778888888999999998 66666666 788888888
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|..+++ ++|.++|++..++.|
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 8999999998 999999999888877
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.12 E-value=7.3e-06 Score=64.75 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
......+..+...|+.++|.+.++++++.... ...+...++.++..+|++++|+. ++...+.+ |.+...++..
T Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 199 (243)
T 2q7f_A 126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNEN----DTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNA 199 (243)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 45667788888889999999999988865432 23466788888999999999998 66666666 7888888889
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+|.-+++ ++|.+++++..++.|
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHccCHHHHHHHHHHHHccCc
Confidence 999999999 999999999988877
No 25
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.11 E-value=2.1e-05 Score=58.72 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+.......+..+...|+.++|.+.++++++.. +. ...+...++.++..+|++++|++ ++...+.+ |.+.+.++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 114 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADA---PD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRF 114 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHH
Confidence 34567788888999999999999999998753 22 23566788999999999999999 66776666 88889999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|..+++ ++|.+++++..+..|
T Consensus 115 ~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 115 RLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 99999999999 999999999988876
No 26
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=9.2e-06 Score=73.89 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC------------CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE------------PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE 223 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e------------~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e 223 (271)
...+...+..+.+.|++++|++.+++|++.+.+. ......+-..++.++..+|+|++|+. |+...+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4558889999999999999999999999855431 11223455678899999999999999 7777766
Q ss_pred CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+ |.+...++..|.+|..+++ +||.++|++..++.|
T Consensus 303 ~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 303 D--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred C--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 6 8999999999999999999 999999999999987
No 27
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.10 E-value=1e-05 Score=62.72 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
......+......++.+.|.+.++++.+.. |. ..++...++.++..+|+|++|++ |+...+.+ |.+...+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l 147 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALN---TV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSI 147 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHH
Confidence 345666777888889999998888887543 22 23566778999999999999999 77777777 8999999999
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+|.-+++ +||.++|++-.++-|
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 999999999 999999998877655
No 28
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.08 E-value=2.4e-05 Score=55.01 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.......+..+...|+.++|.+.++++++.. +. ...+...+++++..+|++++|++ +++..+.. |.+...++.
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 108 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYN 108 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHH
Confidence 3456667888888999999999999988653 22 23456678999999999999999 66766666 788888888
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|.-+++ ++|.+++++..++-|
T Consensus 109 la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 109 LGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8999999999 999999999888766
No 29
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.08 E-value=1.4e-05 Score=64.29 Aligned_cols=99 Identities=12% Similarity=0.002 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
+.+...+..+...|++++|++.++++++... .....+-..++.++..+|+|++|++ ++...+.+ |.+...++..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 82 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN---NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK 82 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC---CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 5788889999999999999999999997653 1112344558999999999999999 77777777 8999999999
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
|.+|.-+++ ++|.+++++-.++.|.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 999999999 9999999999998883
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.04 E-value=3.6e-05 Score=61.69 Aligned_cols=99 Identities=10% Similarity=0.130 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+......++..+...|+.++|++.++++++.. +. ...+...++.++..+|++++|+. +++..+.+ |.+...+.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 213 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RN-QPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLL 213 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHH
Confidence 45556677777888888888888888887643 21 24556778888888888888888 66666555 77777788
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..+.+|.-++. ++|.+++++..++.|
T Consensus 214 ~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 214 LGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 88888888888 888888888888877
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.03 E-value=2.9e-05 Score=63.68 Aligned_cols=102 Identities=15% Similarity=0.034 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-----CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-----EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~-----eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~ 230 (271)
...+...+..+...|+.++|.+.++++++...... .....+-..++.++..+|++++|+. ++...+.+ |.+.
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~ 270 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNA 270 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCS
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccch
Confidence 45567777788888888888888888887765432 2223466677888888888888888 66666555 7788
Q ss_pred CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..++..|.+|.-+++ ++|.++|++-.++.|
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 888888888888888 888888888777766
No 32
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.02 E-value=3.9e-05 Score=53.89 Aligned_cols=95 Identities=19% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
.-.++..+...|+.++|.+.++.+++.. +.. ......++.++..+|++++|++ ++...+.+ |.+...++..|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 77 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD---PRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC---Ccc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHH
Confidence 4456777888899999999999998643 222 2345567899999999999999 66776666 788888888999
Q ss_pred HHHhhCh-HHHHHHHHHHHhhcC
Q 024174 239 IYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+|...++ ++|.+++++..+..|
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDP 100 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC
Confidence 9999999 999999999888766
No 33
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.01 E-value=3.4e-05 Score=59.76 Aligned_cols=99 Identities=6% Similarity=-0.058 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHH-HHHhcch--HHHhh-hhhhcccCCCCCCCCc
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEI-LIYQGKY--REALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEi-lI~qGk~--~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
......++..+...|+.++|++.++++++...++ ..+...++.+ +..+|++ ++|+. ++.....+ |.+...
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 117 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALD--SNEITA 117 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--CCcHHH
Confidence 4567888889999999999999999999765322 4466778888 6678999 99999 77777777 899999
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
++..|.+|..+++ ++|.++|++..++.|.
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999999999 9999999999999884
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.01 E-value=5.3e-05 Score=60.92 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
.+...+..++..+...|+.++|.+.++++++.. |. ...+...++.++..+|+|++|++ ++...+.+ |.+...+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~ 114 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--ccccHHH
Confidence 567778899999999999999999999999753 32 23466788999999999999999 77777766 8899999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
+..|.+|.-+++ ++|.++|++-.++.|.
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999999999 9999999999988773
No 35
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.00 E-value=2.5e-05 Score=67.16 Aligned_cols=99 Identities=10% Similarity=0.011 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+...+...+..+...|++++|++.+++|++. +|. ...+-..++.++..+|+|++|++ |+...+.+ |.+...++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 3457889999999999999999999999975 332 24566788999999999999999 77777666 89999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|..+++ +||.+++++..++.|
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999 999999999999887
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.00 E-value=3.5e-05 Score=60.81 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.......+..+...|+.++|.+.++++++....+ .++...++.++..+|++++|+. ++...+.. |.+...+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 164 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQ 164 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHH
Confidence 4556777888889999999999999988754322 3467788999999999999999 66766666 788888899
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|.-+++ ++|.++|++..+..|
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999 999999999888766
No 37
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.99 E-value=2.5e-05 Score=64.38 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+++.+...+..+...|++++|++.++++++.. |. ...+...++.++..+|+|++|+. ++...+.+ |.+...+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 75 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHH
Confidence 56778899999999999999999999999743 32 23577889999999999999999 77777666 88889999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|..+++ ++|.+++++..++.|
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 99999999999 999999999887765
No 38
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.98 E-value=3.6e-05 Score=68.14 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--Ccc---------cchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPA---------YNVEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eea---------ynirmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
++...+...+..+.+.|++++|++.+++|++....+. .+. -.+-..++.++..+|+|++|+. |+....
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566789999999999999999999999998764432 111 3566778999999999999999 777776
Q ss_pred cCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 223 EQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 223 e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+ |.+...++..|.+|..+++ ++|.++|++-.++-|
T Consensus 225 ~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 225 LD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 66 8999999999999999999 999999999999887
No 39
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.98 E-value=2.4e-05 Score=61.52 Aligned_cols=98 Identities=12% Similarity=0.038 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+.-..-..+..+...|++++|.+.+++++ ++ ...+...++.++..+|+|++|++ |+.....+ |.+...++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 75 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ-----DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS-----SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc-----CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 34456678888999999999999998875 22 34577889999999999999999 77766666 88889999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcCCC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETIDDE 262 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~~ 262 (271)
..|.+|..+++ ++|.++|++-.++.|..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence 99999999999 99999999999988854
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.97 E-value=3.3e-05 Score=67.65 Aligned_cols=100 Identities=13% Similarity=0.032 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
.++.+.+...+..+...|++++|++.++++++.. |. ..+...++++++.+|+|++|+. ++...+.+ |.+...
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 75 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELK---ED--PVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cc--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHH
Confidence 3567889999999999999999999999999754 42 4567778999999999999999 77777777 999999
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
++..|.+|..+++ ++|.+.|++-.++-|
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 9999999999999 999999999887776
No 41
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.97 E-value=4.9e-05 Score=62.64 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---C
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---G 230 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~ 230 (271)
.+...+-..|..+...|++++|++.++++++....+ ....++...++.++..+|+|++|+. ++.+.+.. |.+ .
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 89 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDPRVP 89 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCchhH
Confidence 356778999999999999999999999988633111 1235677889999999999999999 77877765 655 3
Q ss_pred CchhHHHHHHHh--------hCh-HHHHHHHHHHHhhcCC
Q 024174 231 RFPFYKAIIYTM--------LNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 231 R~~L~k~IIYtm--------L~k-~EA~k~we~f~~lv~~ 261 (271)
..++..|.+|.. +++ ++|.++|+++.+..|.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 457788999998 889 9999999999999984
No 42
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=3e-06 Score=62.63 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=68.6
Q ss_pred cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HH
Q 024174 170 YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EE 247 (271)
Q Consensus 170 Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~E 247 (271)
.|+.++|++.++++++....+| ....+...++.++..+|+|++|++ +++..+.+ |.+...++..|.+|.-+++ +|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 4778899999998886321122 334667788899999999999999 77777777 8999999999999999999 99
Q ss_pred HHHHHHHHHhhcC
Q 024174 248 AKKWWEEFAETID 260 (271)
Q Consensus 248 A~k~we~f~~lv~ 260 (271)
|.++|++..+..|
T Consensus 80 A~~~~~~al~~~p 92 (117)
T 3k9i_A 80 GVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999888877
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.95 E-value=4.3e-05 Score=59.17 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 158 NAIKAEAVKQMKY-GKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 158 ~~lk~~A~~L~kS-gk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
......+..+... |+.++|++.++++++ .........+...++.++..+|++++|+. ++...+.+ |.+...+..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 152 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKE 152 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHH
Confidence 3456677777788 888888888888776 11222234556677788888888888888 55655555 677777777
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|..+++ ++|.++|++..++.|
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7888888888 888888888777665
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.94 E-value=3.9e-05 Score=61.49 Aligned_cols=100 Identities=12% Similarity=-0.048 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
......++..+...|+.++|.+.++++++ .........+...++.++..+|++++|++ ++...+.+ |.+...++.
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 180 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALE 180 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHH
Confidence 34566777888888999999999888876 11223344566778888888999999998 66666666 788888888
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|..+++ ++|.++|++..+..|
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 8999999999 999999998887666
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.94 E-value=4.7e-05 Score=60.19 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc----------------------CCCcccchHHHHHHHHHHhcchHHH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN----------------------EPEPAYNVEMALVEILIYQGKYREA 214 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~----------------------e~eeaynirmllvEilI~qGk~~EA 214 (271)
......++..+...|+.++|++.++++++.... .......+...++.++..+|+|++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 566888899999999999999999999873211 2223345677889999999999999
Q ss_pred hh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 215 LE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 215 L~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
++ ++...+.+ |.+...++..|.+|.-+++ ++|.++|++..++.|
T Consensus 159 ~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 159 VKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 99 77777766 8899999999999999999 999999999988876
No 46
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.93 E-value=3.1e-05 Score=65.93 Aligned_cols=99 Identities=17% Similarity=0.050 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+......++..+...|+.++|++.++++++....+ ..+-..++.++..+|+|++|+. |++..+.+ |.+...+.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 285 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRY 285 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHH
Confidence 44567778888899999999999999998754222 3466788999999999999999 77777666 89999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|.-+++ ++|.++|++-.++.|
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999 999999999999888
No 47
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.93 E-value=6.6e-05 Score=59.04 Aligned_cols=98 Identities=7% Similarity=-0.082 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC-----
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG----- 230 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~----- 230 (271)
.......+..+...|++++|++.++++++.. +. .......++.++..+|+|++|+. ++...+.. |.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~ 110 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRD---KH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL--RGNQLIDYK 110 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCSEEECG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-chHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCccHHHHH
Confidence 3467888899999999999999999999753 22 23456778999999999999999 66665544 5555
Q ss_pred -----------CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 231 -----------RFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 -----------R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..++..|.+|.-+++ ++|.++|++..++.|
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 889999999999999 999999999999887
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.92 E-value=1.6e-05 Score=65.07 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+....-.++..+...|+.++|++.+++|++.. +...+...++.++..+|+++||.. |+...+.+ |.|...++
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~ 189 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRV 189 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 34567788889999999999999999999754 345567789999999999999999 77877777 99999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHH
Q 024174 235 YKAIIYTMLNM-EEAKKWWEE 254 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~ 254 (271)
..|.+|..+++ +||.++|++
T Consensus 190 ~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 190 RYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTC-------------
T ss_pred HHHHHHHHccCHHHHHHHHHH
Confidence 99999999999 999888764
No 49
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.92 E-value=8.5e-05 Score=60.78 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC---c
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR---F 232 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R---~ 232 (271)
.+-..|..+...|++++|++.++++++. .|.. ..+..+.+++++..+|+|++|+. ++.+.+.. |.+.. .
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4667788899999999999999999863 3432 34678889999999999999999 88888877 88876 5
Q ss_pred hhHHHHHHHh------------------hCh-HHHHHHHHHHHhhcCC
Q 024174 233 PFYKAIIYTM------------------LNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 233 ~L~k~IIYtm------------------L~k-~EA~k~we~f~~lv~~ 261 (271)
+++.|.+|.- +++ ++|.+.|+++.+..|.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 7889999875 356 9999999999999984
No 50
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.91 E-value=5.3e-05 Score=68.54 Aligned_cols=102 Identities=13% Similarity=-0.006 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC---CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE---PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e---~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
....-.++..+...|+.++|.+.++++++...+. |...-.+-..++.++..+|++++|++ ++++.+.+ |.|...
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 552 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANV 552 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHH
Confidence 3456677888888999999999999999877652 33224577788999999999999999 77777766 889999
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+..-|.+|.-+++ +||.++|++..++-|
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999 999999999999888
No 51
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.90 E-value=2.9e-05 Score=60.57 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
.-.+|......|++++|.+.++++++.- |. ..++-..++.++..+|++++|+. |+...+.+ |.|...++.-|.
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~ 107 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQ---ER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN--PTQKDLVLKIAE 107 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3467888899999999999999999753 32 23566778999999999999999 77777777 999999999999
Q ss_pred HHHhhCh-HHHHHHH-HHHHhhcC
Q 024174 239 IYTMLNM-EEAKKWW-EEFAETID 260 (271)
Q Consensus 239 IYtmL~k-~EA~k~w-e~f~~lv~ 260 (271)
+|.-+++ +||.+.| ++-.++-|
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHHST
T ss_pred HHHHcCChHHHHHHHHHHHHHhCc
Confidence 9999999 7777665 88888887
No 52
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.90 E-value=3.2e-05 Score=62.92 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC----CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC-----
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE----PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ----- 224 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e----~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~----- 224 (271)
.....+..++..+...|+.++|++.++++++.+++. ......+...++.++..+|++++|++ +++..+..
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 456678888999999999999999999999987764 33444567788999999999999999 55433210
Q ss_pred ------------------------------------------CCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 225 ------------------------------------------RIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 225 ------------------------------------------~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+...+...|.+|..+++ ++|.++|++-.++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 014456667888999999999 999999999988876
No 53
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.89 E-value=3.3e-05 Score=67.09 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII 239 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II 239 (271)
...+..+...|+.++|++.++++++....++.....+-..++.++..+|++++|+. |+...+.+ |.+...++..|.+
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 34488889999999999999999975433222224567788999999999999999 77776666 8899999999999
Q ss_pred HHhhCh-HHHHHHHHHHHhhcC
Q 024174 240 YTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 240 YtmL~k-~EA~k~we~f~~lv~ 260 (271)
|..+++ ++|.+++++..++-|
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHHHHHhCc
Confidence 999999 999999999999887
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.88 E-value=7.9e-05 Score=57.66 Aligned_cols=98 Identities=10% Similarity=-0.013 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh-cchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ-GKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~q-Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
.....+..+...|+.++|.+.++++++.. +. ...+...++.++..+ |++++|+. ++...+....|.+...+...
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIK---PD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 34444555555555555555555555432 11 123444555666666 66666666 44444311114445555556
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+|.-+++ ++|.++|++..+..|
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~~ 144 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQP 144 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666666666 666666666555544
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.87 E-value=5.3e-05 Score=64.75 Aligned_cols=102 Identities=11% Similarity=-0.042 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC-
Q 024174 157 VNAIKAEAVKQMKY-GKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR- 231 (271)
Q Consensus 157 v~~lk~~A~~L~kS-gk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R- 231 (271)
...+..++..+... |++++|++.+++|++...++.. ....+-.-++++++.+|+|++|+. |++..+.. |.+..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 194 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS--MGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--SSCTTT
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--hcCCcc
Confidence 44577888888887 9999999999999998876543 234556778999999999999999 66666554 44433
Q ss_pred ------chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 232 ------FPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 232 ------~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.++..|++|.-+++ ++|.++|+++.++.|
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35678999999999 999999999998877
No 56
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.87 E-value=6.1e-06 Score=64.44 Aligned_cols=87 Identities=10% Similarity=0.080 Sum_probs=71.8
Q ss_pred HhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-
Q 024174 168 MKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM- 245 (271)
Q Consensus 168 ~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k- 245 (271)
...|+.++|++.++++.+. ..+.......|+.++..+|+|++|.+ ++...+.+ |.|...+...|.+|..+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 3456778888877777642 22333455788999999999999999 77777777 9999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 024174 246 EEAKKWWEEFAETID 260 (271)
Q Consensus 246 ~EA~k~we~f~~lv~ 260 (271)
++|.++|++-.++-|
T Consensus 82 ~~A~~~~~~al~~~p 96 (150)
T 4ga2_A 82 DKAVECYRRSVELNP 96 (150)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999887
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.84 E-value=0.00013 Score=58.96 Aligned_cols=94 Identities=11% Similarity=-0.085 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc----hh
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF----PF 234 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~----~L 234 (271)
+-..|..+...|+.++|++.++++++.. |.. ..+-..++.++..+|+|++|+. ++...+ . |.|... ++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~--~~~~~~~~~~~~ 78 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK---YNS-PYIYNRRAVCYYELAKYDLAQKDIETYFS-K--VNATKAKSADFE 78 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCC-STTHHHHHHHHHHTTCHHHHHHHHHHHHT-T--SCTTTCCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c--cCchhHHHHHHH
Confidence 4556666666777777777777666432 211 1244455566666777777776 444444 2 333333 56
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|.-+++ ++|.++|++-.++-|
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~ 105 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDT 105 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 66777777777 777777766666555
No 58
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.83 E-value=6.7e-05 Score=61.46 Aligned_cols=100 Identities=19% Similarity=0.089 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+......++..+...|+.++|.+.++++++.. +. ...+-..++.++..+|++++|++ ++.....+ |.+...+.
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 244 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR---PD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMY 244 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 34567778888999999999999999998753 22 23566788999999999999999 77766666 88888999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
..|.+|..+++ ++|.+++++..++.|.
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99999999999 9999999999998883
No 59
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.83 E-value=6e-05 Score=63.45 Aligned_cols=99 Identities=19% Similarity=0.071 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+......++..+...|+.++|++.++++++.. |.. ..+-..++.++..+|++++|+. ++...+.+ |.+...+.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 289 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PND-YLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRY 289 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 45567788888999999999999999998753 222 3466788999999999999999 77766666 88899999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|.-+++ ++|.++|++..++.|
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999 999999999999888
No 60
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.83 E-value=0.00011 Score=60.50 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH--------hcchHHHhh-hhhhcccCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY--------QGKYREALE-CNCLKDEQRIP 227 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~--------qGk~~EAL~-~~~L~~e~~~p 227 (271)
...+-.++..+...|++++|++.++.+++..-+++ ...+....++.++.. +|++++|++ ++.+.+.. |
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p 128 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--P 128 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--c
Confidence 55688899999999999999999999997543332 334566778888888 999999999 77888777 8
Q ss_pred CCCCch-----------------hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 228 SDGRFP-----------------FYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 228 ~D~R~~-----------------L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
.+.... +..|.+|.-+++ ++|.++|++..+..|.
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 887777 778999999999 9999999999999884
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.82 E-value=0.00011 Score=56.91 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+...+..++..+...|+.++|++.++.+.+.. + ....+...++.++..++++++|.. +....+.+ |.|...+.
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~ 111 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---T-TSAEAYYILGSANFMIDEKQAAIDALQRAIALN--TVYADAYY 111 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---c-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 45678888999999999999999999887543 2 234566678888999999999999 66776666 89999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|.-+++ +||.++|++..++-|
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 112 KLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 99999999999 999999999998877
No 62
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.80 E-value=7.2e-05 Score=61.23 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh-----------cchHHHhh-hhhhccc
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ-----------GKYREALE-CNCLKDE 223 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~q-----------Gk~~EAL~-~~~L~~e 223 (271)
+......++..+...|+.++|++.++++++. +|.. ......++.++..+ |++++|+. ++...+.
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~-~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVAR---TPRY-LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc-HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence 4567888889999999999999999988864 3322 23556677788888 99999998 7777766
Q ss_pred CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
+ |.+...++..|.+|..+++ +||.++|++-.++-
T Consensus 114 ~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 114 N--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 6 8888888888888888888 88888888765543
No 63
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.76 E-value=0.00015 Score=59.37 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 159 AIKAEAVKQMKYG-KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 159 ~lk~~A~~L~kSg-k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
....++..+...| +.++|.+.++++++.. +. ...+...++.++..+|+|++|++ ++...+.. |.+...+++.
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 165 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE---KT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYI 165 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHH
Confidence 4555666666777 7777777777766432 21 22345566677777777777777 55555444 5666666677
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+|..+++ ++|.+++++-.++.|
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~ 190 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAP 190 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 777777777 777777766666555
No 64
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.76 E-value=6.9e-05 Score=60.56 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
+..++..+...|++++|++.++++++.. .++.-....-..++.++..+|+|++|++ ++...+.+ |.+...+...|.
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 116 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGS 116 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 5555666666677777777776666511 2222222334566666666677777666 55555544 566666666666
Q ss_pred HHHhhCh-HHHHHHHHHHHhh
Q 024174 239 IYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~l 258 (271)
+|..+++ ++|.++|++-.++
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHccCHHHHHHHHHHHhhc
Confidence 6666666 6666666655544
No 65
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=9.5e-06 Score=57.25 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-----
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD----- 229 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D----- 229 (271)
+...+...+..+...|++++|++.++++++.. |.. ..+-..++.++..+|+|++|+. |+.....+ |.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHH
Confidence 45678889999999999999999999999753 322 3556788999999999999999 77777666 777
Q ss_pred -CCchhHHHHHHHhhCh-HHHHHHHH
Q 024174 230 -GRFPFYKAIIYTMLNM-EEAKKWWE 253 (271)
Q Consensus 230 -~R~~L~k~IIYtmL~k-~EA~k~we 253 (271)
...++..|.+|.-++. ++|.+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 5666777777777776 66654443
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.75 E-value=0.00012 Score=58.62 Aligned_cols=97 Identities=8% Similarity=-0.018 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC------
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG------ 230 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~------ 230 (271)
......+..+...|++++|++.++++++. +|. ...+-..++.++..+|+|++|++ ++...+.+ |.|.
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~ 116 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKK---NYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLY 116 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh---Ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHH
Confidence 35566889999999999999999999852 333 44567789999999999999999 77777666 7877
Q ss_pred -CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 231 -RFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 -R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..+...|.+|.-+++ ++|.+++++-.++-|
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 669999999999999 999999999887765
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.73 E-value=5.6e-05 Score=60.19 Aligned_cols=106 Identities=18% Similarity=0.046 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--C--CcccchHHHHHHHHHHhcchHHHhh-hhhhccc------
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--P--EPAYNVEMALVEILIYQGKYREALE-CNCLKDE------ 223 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e--~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e------ 223 (271)
.....+..++..+...|+.++|++.++++++.+++. + .....+...++.++..+|+|++|+. +++..+.
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 456678899999999999999999999999987653 2 3445667788999999999999999 5544332
Q ss_pred CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-.|.+...+...|.+|.-+++ ++|.+++++-.++.+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0015567788889999999999 999999999988754
No 68
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.73 E-value=7.4e-05 Score=54.13 Aligned_cols=106 Identities=15% Similarity=0.077 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCC-CC
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQR-IP 227 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~-~p 227 (271)
.....+..++..+...|+.++|++.++++++.+.+.. ...-.+...++.++..+|+|++|+. ++. +..+.. .+
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 3455677888888899999999999999998887643 3333567778999999999999998 553 222210 01
Q ss_pred CCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 228 SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 228 ~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-.+.+...|.+|..+++ ++|.+++++-.++.+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 115567788899999999 999999988776654
No 69
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.72 E-value=5.4e-05 Score=60.26 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC----CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc------
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE----PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE------ 223 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e----~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e------ 223 (271)
.....+..++..+...|++++|++.++++++.+++. ....-.+-..++.++..+|+|++|+. +++..+.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 467778899999999999999999999999987643 23444566778999999999999999 5543322
Q ss_pred CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
...|.....+...|.+|..+++ ++|.+++++-.++
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0014557778889999999999 9999999998877
No 70
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.71 E-value=0.00015 Score=62.92 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
.++..+...+..+...|+.++|++.++++++. +|. ...+-..++.++..+|+|++|+. ++...+.+ |.+...+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 97 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAAR 97 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHH
Confidence 57778899999999999999999999999864 332 24566678889999999999999 77777776 8899999
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...|.+|..+++ ++|.++|++-.++.|
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999 999999999888766
No 71
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.71 E-value=0.00014 Score=59.60 Aligned_cols=100 Identities=15% Similarity=-0.022 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+...+-..|..+...|+.++|++.++++++.. |. ...+...++.++..+|+|++|++ ++...+.+ |.+...+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 93 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHA 93 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHH
Confidence 33446778889999999999999999998643 32 23455678999999999999999 66777666 88999999
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
..|.+|..+++ ++|.+++++..++.|.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 99999999999 9999999999988773
No 72
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=5.6e-05 Score=55.04 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHH
Q 024174 175 FAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWW 252 (271)
Q Consensus 175 eave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~w 252 (271)
+|++.++++++ .+|. ...+...++.++..+|+|++|++ ++...+.+ |.+...+...|.+|..+++ ++|.++|
T Consensus 3 ~a~~~~~~al~---~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLA---QGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHT---TTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46667776664 2343 34577788999999999999999 77777666 8888899999999999999 9999999
Q ss_pred HHHHhhcC
Q 024174 253 EEFAETID 260 (271)
Q Consensus 253 e~f~~lv~ 260 (271)
++-.++.|
T Consensus 77 ~~al~~~~ 84 (115)
T 2kat_A 77 ESGLAAAQ 84 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99887765
No 73
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.68 E-value=3.3e-05 Score=68.61 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---c----------ccchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---P----------AYNVEMALVEILIYQGKYREALE-CNCLK 221 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---e----------aynirmllvEilI~qGk~~EAL~-~~~L~ 221 (271)
....++..+..+.+.|++++|.+.+++|++....+.. . ...+-..++.++..+|+|++|+. |+...
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666889999999999999999999999876433210 0 00266778999999999999999 77766
Q ss_pred ccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 222 DEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 222 ~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..+ |.+.+.++..|.+|..+++ ++|.++|++..++-|
T Consensus 258 ~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 258 TEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 666 8999999999999999999 999999999988877
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.68 E-value=0.00014 Score=72.94 Aligned_cols=100 Identities=20% Similarity=0.128 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
++.+++..++..+...|+.++|++.+++|++.. |. .......++.++..+|+|+||+. |++..+-+ |.+...+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~ 80 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF---PE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 466777777888888888888888777777542 21 12334456666777777777777 55555545 6666677
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...|.+|.-+++ +||.++|++-.++-|
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P 108 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINP 108 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777777777777 777777776666655
No 75
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.68 E-value=1.9e-05 Score=63.56 Aligned_cols=90 Identities=10% Similarity=-0.037 Sum_probs=75.7
Q ss_pred hcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-H
Q 024174 169 KYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-E 246 (271)
Q Consensus 169 kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~ 246 (271)
.+|++++|++.++++++....++.....+-..++.++..+|+|++|+. ++...+.+ |.+...+...|.+|.-+++ +
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 457889999999999875433333445677788999999999999999 77777766 8999999999999999999 9
Q ss_pred HHHHHHHHHHhhcC
Q 024174 247 EAKKWWEEFAETID 260 (271)
Q Consensus 247 EA~k~we~f~~lv~ 260 (271)
+|.++|++-.++.|
T Consensus 95 ~A~~~~~~al~~~~ 108 (275)
T 1xnf_A 95 AAYEAFDSVLELDP 108 (275)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999998877
No 76
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00012 Score=67.81 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cc---------cchHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PA---------YNVEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--ea---------ynirmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
+....++..+..+.+.|++++|.+.+++|++....... ++ ..+-.-++..+..+|+|++|+. |+...+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34667889999999999999999999999987644421 00 2455678888999999999999 777666
Q ss_pred cCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 223 EQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 223 e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+ |.+...++..|.+|..+++ ++|.++|++-.++-|
T Consensus 346 ~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 346 LD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred cC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 66 8999999999999999999 999999999998877
No 77
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.67 E-value=0.00024 Score=52.92 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.......+..+...|+.++|.+.++++++.. +. ...+-..++.++..+|+|++|++ ++...+.+ |.|...+.+
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~ 120 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELD---KK-YIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMK 120 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 4567788889999999999999999999753 22 23466788999999999999999 66766666 777766644
Q ss_pred HHHH--HHhhCh-HHHHHHHHHHHhhcCC
Q 024174 236 KAII--YTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 236 k~II--YtmL~k-~EA~k~we~f~~lv~~ 261 (271)
.+.. |.-.+. ++|.+++++..++.+.
T Consensus 121 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 121 YQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 4555 555566 9999999998888764
No 78
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.66 E-value=0.00017 Score=62.54 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPA-YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eea-ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
+.......+..+...|+.++|.+.++++.+. +|... .++-...+.++.-+|+++||+. ++++.+.. |.|...+
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~ 203 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLL 203 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHH
Confidence 3445666777888899999999999988865 33321 2222234455555688888888 66777766 7787777
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-.|.+|.-+++ +||++++++-.++-|
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 778888888888 888888888777666
No 79
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.65 E-value=0.0003 Score=53.46 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC------
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD------ 229 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D------ 229 (271)
-.+.+.+...+.+.|++++|++..++|++. +|.. ..+-.-++.++..+|+|++|+. |+...+-+ |.+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~ 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHH
Confidence 445778889999999999999999999975 3432 2334457888999999999999 66543332 222
Q ss_pred -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
++.+.-.|.+|.-+++ ++|.++|++-.+..|
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 2456667889999999 999999999877665
No 80
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.64 E-value=0.00013 Score=67.86 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+......++..+...|++++|.+.++++++. +|. ..+....++.++..+|+|++|++ |++..+.+ |.|...++
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 95 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPG-HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIAL 95 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 3455666777777777888887777777753 222 23455667777777777777777 55655555 67777777
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|..+++ +||.++|++-.++-|
T Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p 122 (568)
T 2vsy_A 96 WLGHALEDAGQAEAAAAAYTRAHQLLP 122 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777777 777777777776665
No 81
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.61 E-value=0.00025 Score=62.84 Aligned_cols=98 Identities=17% Similarity=0.042 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.......+..+...|+.++|.+.++++++....+ ..+...++.++..+|++++|+. ++...+.+ |.+...+..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 383 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTF 383 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHH
Confidence 3456777777888888888888888887643222 2556678888888888888888 66766666 788888888
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|.-+++ ++|.++|++-.++.|
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 8888888888 888888888877766
No 82
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.60 E-value=0.00012 Score=62.41 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
..+-..+..+...|++++|++.++++++.. |.. ..+-..++.++..+|+|++|++ ++...+.+ |.+...+...
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 139 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGD-AEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMAL 139 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHH
Confidence 347778999999999999999999999753 322 4566788999999999999999 77777666 8999999999
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+|.-+++ ++|.+++++-.++.|
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCc
Confidence 999999999 999999999988766
No 83
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.59 E-value=3.7e-05 Score=72.07 Aligned_cols=95 Identities=15% Similarity=0.006 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
+...|..+...|++++|++.+++|++.. |.. ..+-..++.++..+|+|++|++ |++..+.+ |.+...+...|.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~---p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 82 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN---PSN-AIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 82 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC---Ccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3444556677899999999999998753 322 4556678889999999999999 77777666 899999999999
Q ss_pred HHHhhCh-HHHHHHHHHHHhhcC
Q 024174 239 IYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+|.-+++ +||.++|++-.++-|
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999 999999999988877
No 84
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.59 E-value=0.0003 Score=59.15 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc------------------------------------------
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP------------------------------------------ 193 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee------------------------------------------ 193 (271)
+...+..++..+...|+.++|++.++++++........
T Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 34567778888888899999998888877643322111
Q ss_pred -----ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 194 -----AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 194 -----aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...+...++.++..+|+|++|+. ++...+.+ |.+...+...|.+|.-+++ ++|.++|++-.++-|
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 23445667888888888888888 66666555 7788888888888888888 888888888877765
No 85
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.58 E-value=0.00015 Score=58.85 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC----CCcccchHHHHHHHHHHhcchHHHhh-hhhhccc------
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE----PEPAYNVEMALVEILIYQGKYREALE-CNCLKDE------ 223 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e----~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e------ 223 (271)
+....+..++..+...|+.++|++.++++++.+++. ......+-..++.++..+|+|++|+. ++...+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 567789999999999999999999999999987652 33445667788999999999999999 5543321
Q ss_pred CCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 224 QRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 224 ~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
.-.|.....+...|.+|..+++ ++|.+++++-.++.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 1015567788889999999999 99999999988775
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.57 E-value=0.00031 Score=57.08 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174 163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT 241 (271)
Q Consensus 163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt 241 (271)
++..+...|++++|.+.++++++. +|.. .++...++.++..+|++++|+. |+.....+ |.+...++..|.+|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNN-VDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 889999999999999999999964 3332 3567788999999999999999 77777666 787666665555554
Q ss_pred hh
Q 024174 242 ML 243 (271)
Q Consensus 242 mL 243 (271)
..
T Consensus 134 ~~ 135 (208)
T 3urz_A 134 LT 135 (208)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 87
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.57 E-value=8.2e-05 Score=63.99 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhccc---C-CCCC
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDE---Q-RIPS 228 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e---~-~~p~ 228 (271)
......+...+..+...|++++|++.++++++...+++...-.+-..++.++..+|+|++|+. +++..+. . -.+.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 466778889999999999999999999999986433333334577889999999999999999 5543222 1 0145
Q ss_pred CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 229 DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 229 D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..+.+...|.+|..+++ ++|.+++++-.++.+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 157 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR 157 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 57788899999999999 999999998776643
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.55 E-value=0.00026 Score=65.76 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+......++..+...|+.++|.+.++++++.. |.. ......+++++..+|++++|++ +++..+.+ |.+...+.
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 129 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA---PEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITA 129 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 45668888999999999999999999999753 322 3466788999999999999999 77777666 88888899
Q ss_pred HHHHHHHhh---Ch-HHHHHHHHHHHhhcCCCCCCC
Q 024174 235 YKAIIYTML---NM-EEAKKWWEEFAETIDDEEFDP 266 (271)
Q Consensus 235 ~k~IIYtmL---~k-~EA~k~we~f~~lv~~~~f~~ 266 (271)
..|.+|..+ ++ ++|.++|++-.+.-| +..++
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 164 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGV-GAVEP 164 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHTC-CCSCH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcCC-cccCh
Confidence 999999999 99 999999999988887 44433
No 89
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.54 E-value=0.00054 Score=59.37 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
.++..+..+|..+...++.++|++.|++.+..- -+|.. -.+.+.++.++..+|++++|++ ++. |.+...+
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~-~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~ 133 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRS-VDVTN-TTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECM 133 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC-CCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-cCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHH
Confidence 467889999999999999999999999877410 02433 3568889999999999999997 444 5666788
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+..|.||..+|+ +||.+++++..++-|
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p 161 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQDE 161 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 888999999999 999999999888866
No 90
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00035 Score=61.19 Aligned_cols=97 Identities=13% Similarity=-0.035 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHH---hcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIY---QGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~---qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
..+..+...|+.++|.+.++++++...+++.. ...+-..++.++.. +|++++|++ ++...+.+ |.+...+..
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 454 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 33444444444555555444444433322111 11134444455555 555555555 33333333 444444455
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|.-+++ ++|.++|++..++.|
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 5555555555 555555555544444
No 91
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00038 Score=59.92 Aligned_cols=97 Identities=16% Similarity=0.032 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
+....++..+...|+.++|.+.++++++....+ ..+-..++.++..+|++++|.. +++..+.+ |.+...+...
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 345 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHH
Confidence 345666777777788888888888777653221 2344456777777888888888 66666555 7777778888
Q ss_pred HHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 237 AIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+|.-+++ +||.++|++..++-|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888 888888888877766
No 92
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.52 E-value=0.00035 Score=61.90 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchH--HHHHHHHHHh----------cchHHHhh-hhhhcccCCC
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVE--MALVEILIYQ----------GKYREALE-CNCLKDEQRI 226 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynir--mllvEilI~q----------Gk~~EAL~-~~~L~~e~~~ 226 (271)
....+..+...|+.++|.+.++++++....++..-..+. ..++.++..+ |+|++|+. ++...+.+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 458 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-- 458 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--
Confidence 344455555556666666666666555544433333332 3334555555 66666666 55555444
Q ss_pred CCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 227 PSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 227 p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
|.+...++..|.+|..+++ ++|.++|++-.++.|
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 6666667777777777777 777777777766665
No 93
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.51 E-value=0.00025 Score=51.34 Aligned_cols=104 Identities=17% Similarity=0.065 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhc---ccC-CCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLK---DEQ-RIPSD 229 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~---~e~-~~p~D 229 (271)
......++..+...|+.++|.+.++++++.+.+.. ...-.+-..++.++..+|+|++|.. ++... .+. ..+..
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 128 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence 45678889999999999999999999999887643 3334566778999999999999999 55322 221 01222
Q ss_pred CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.+...|.+|..+++ ++|.+++++-.++..
T Consensus 129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5567788999999999 999999999888765
No 94
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.51 E-value=0.00011 Score=53.45 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+...++.+++.+|+|++|++ ++...+.+ |.+...++..|.+|..+++ ++|.++|++-.++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 345666777777777777777 55666555 7777777777777777777 777777777766654
No 95
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.48 E-value=0.00057 Score=61.79 Aligned_cols=98 Identities=9% Similarity=-0.032 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
+...-.++..+.+.|+.++|.+.++++++.. +. ....-..++.++..+|++++|++ +++..+.. |.|...+..
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 446 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLF 446 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHH
Confidence 4445556677778888888888888777532 21 12244567777788888888888 66666555 777777777
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|.-.++ +||.++|++-.++.|
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7888888888 888888887777665
No 96
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.00013 Score=51.35 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=63.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIY 240 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY 240 (271)
..|..+...|++++|++.++++++. +|....++...++.++..+|+|++|++ ++...+.+ |.+...+.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH-----
Confidence 4677888889999999999988863 444433377788888999999999999 66777666 777665433
Q ss_pred HhhCh-HHHHHHHHHHHhhcC
Q 024174 241 TMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 241 tmL~k-~EA~k~we~f~~lv~ 260 (271)
+. ++|.+++++-..+-|
T Consensus 75 ---~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHH
T ss_pred ---HHHHHHHHHHHHHhccCc
Confidence 34 777777776666655
No 97
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.45 E-value=0.00011 Score=59.40 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhc---ccC-CCCCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLK---DEQ-RIPSDGR 231 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~---~e~-~~p~D~R 231 (271)
...+...+..+...|+.++|++.++++++...+++...-.+-..++.++..+|+|++|+. ++... .+. ..+...+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 456778899999999999999999999986433333334667788999999999999999 54422 111 0134467
Q ss_pred chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+...|.+|..+++ ++|.+++++-.++.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 78889999999999 999999999887765
No 98
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.45 E-value=0.0005 Score=57.96 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC-cccc-------hHHHHHHHHHHhcchHHHhh-hhhhccc---
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE-PAYN-------VEMALVEILIYQGKYREALE-CNCLKDE--- 223 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e-eayn-------irmllvEilI~qGk~~EAL~-~~~L~~e--- 223 (271)
..+.++..+..+.+.|++++|++.-++|++...+.++ ++.+ .-.-++-.+...|+|+||+. |..-..-
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4566889999999999999999999999988765432 1222 33456677888999999999 6655544
Q ss_pred ----CCCCCCCCch----hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 224 ----QRIPSDGRFP----FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 224 ----~~~p~D~R~~----L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+ |.|...+ .-+|+.+.-|++ +||-+++++=.++.|
T Consensus 90 ~~e~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 90 RGELN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HCCTT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 5 8888888 999999999999 999999999888877
No 99
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.43 E-value=0.00079 Score=51.86 Aligned_cols=106 Identities=12% Similarity=0.001 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---cccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC-
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---PAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD- 229 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D- 229 (271)
.....+..++......|+.++|.+.++++++.+++.+. ..-.+...++.++..+|+|++|+. +++-.+......|
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 143 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence 44566888999999999999999999999999886552 344567788999999999999999 5543221100122
Q ss_pred ---CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 ---GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ---~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.+...|.+|..+++ ++|.+++++-.++..
T Consensus 144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2234778999999999 999999988776654
No 100
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.0001 Score=62.24 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh---hcccC-CCCCCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQ-RIPSDG 230 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~-~~p~D~ 230 (271)
....+-..+..+...|++++|++.++++++...+++...-.+-..++.++..+|+|++|+. +++ +.... ..|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4566788899999999999999999999986333333334667788999999999999999 554 32221 013446
Q ss_pred CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.+...|.+|..+++ ++|.+++++-.++.+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 118 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISR 118 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 778889999999999 999999998877765
No 101
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.40 E-value=0.00062 Score=57.63 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc-c--cchHHHHHHHHHHhcchHHHhh-hhh---hcccC-CCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP-A--YNVEMALVEILIYQGKYREALE-CNC---LKDEQ-RIP 227 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee-a--ynirmllvEilI~qGk~~EAL~-~~~---L~~e~-~~p 227 (271)
....+...+......|++++|.+.+++|++.++..+.. . ..+-.-++.++..+|+|++|+. +++ +..+. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 46678899999999999999999999999887765432 1 1466778999999999999999 553 22221 001
Q ss_pred CCCCchhHHHHHHHhhCh-HHH-HHHHHHHHhhc
Q 024174 228 SDGRFPFYKAIIYTMLNM-EEA-KKWWEEFAETI 259 (271)
Q Consensus 228 ~D~R~~L~k~IIYtmL~k-~EA-~k~we~f~~lv 259 (271)
.-+..+...|.+|.-+++ ++| ..++++-..+.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 115567889999999999 999 88888755443
No 102
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.38 E-value=0.00074 Score=58.11 Aligned_cols=99 Identities=17% Similarity=0.046 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
++.....++..+...|+.++|++.++++++. +| +...+...++.++..+|++++|.+ ++...+.+ |.+...+.
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 173 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQY---NP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWS 173 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 3455677777888888888888888877753 23 234456677788888888888888 66666555 77777777
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|.-.++ ++|.++|++-.++-|
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~~~p 200 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVTLDP 200 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77888888888 888888887766655
No 103
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.37 E-value=0.00084 Score=45.56 Aligned_cols=82 Identities=18% Similarity=0.096 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
.......++..+...|+.++|++.++++++.. +. ...+-..++.++..+|+|++|++ +++....+ |.+...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 44556778888888999999999999988653 22 23456678888899999999998 66666666 78877777
Q ss_pred HHHHHHHhh
Q 024174 235 YKAIIYTML 243 (271)
Q Consensus 235 ~k~IIYtmL 243 (271)
..|.+|.-+
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777544
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.34 E-value=0.0024 Score=52.07 Aligned_cols=102 Identities=13% Similarity=-0.005 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH------------------hcchHHHhh-h
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY------------------QGKYREALE-C 217 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~------------------qGk~~EAL~-~ 217 (271)
.+..-+++.-+.+.|++++|++.++.+++..-+++. ..+....++.++.. +|++++|++ +
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence 356778889999999999999999999865433322 22333444444443 689999999 8
Q ss_pred hhhcccCCCCCCCCch-----------------hHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 218 NCLKDEQRIPSDGRFP-----------------FYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 218 ~~L~~e~~~p~D~R~~-----------------L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
+.+.+.. |.+.+.+ +..|.+|--.++ ++|.++|++..+..|.
T Consensus 120 ~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 120 SKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 8888877 8887665 677889999999 9999999999999884
No 105
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.33 E-value=0.0003 Score=49.43 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC-chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR-FPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R-~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+..+..++.+|+|++|++ |++..+.+ |.+.. .++..|.+|..+++ ++|.++|++-.++-|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3567888999999999999 77888777 89998 99999999999999 999999999999887
No 106
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.32 E-value=0.00063 Score=68.22 Aligned_cols=99 Identities=15% Similarity=-0.050 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+......++..+...|+.++|++.+++|++.. |. ..+.-..++.++..+|+|++|++ |++..+-+ |.+...+.
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~ 115 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHS 115 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 34567788888888899999988888888643 22 12344557778888888888888 66666666 88888888
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|.-+++ +||.++|++-.++-|
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888 888888888887776
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.32 E-value=0.00054 Score=66.71 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=76.3
Q ss_pred HhcCChhHHHHHHHHHHHHh----hcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHh
Q 024174 168 MKYGKPEFAVTLLKKVYEDC----KNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTM 242 (271)
Q Consensus 168 ~kSgk~deave~Le~A~eka----~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtm 242 (271)
...|++++|++.++.+++.+ .+...+..++.+.++.+++.+|+|++|+. |++..+.+ |.|.+.+...|.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHH
Confidence 67799999999999988221 11223345677888999999999999999 77877777 9999999999999999
Q ss_pred hCh-HHHHHHHHHHHhhcC
Q 024174 243 LNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 243 L~k-~EA~k~we~f~~lv~ 260 (271)
+++ +||.++|++-.++-|
T Consensus 480 ~g~~~~A~~~~~~al~l~P 498 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP 498 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 999 999999999999888
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.31 E-value=0.00045 Score=59.41 Aligned_cols=102 Identities=18% Similarity=0.045 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhccc---CC-CCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKDE---QR-IPSD 229 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~e---~~-~p~D 229 (271)
...+..++..+.. |++++|++.+++|++....... ..-.+-.-++.++..+|+|++|+. |++..+. +. .+.-
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 4567788888888 9999999999999998876542 334566778999999999999999 6653332 20 0111
Q ss_pred CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.++-.|++|.-+++ ++|.++|++.. +.|
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 3456677888888899 99999999999 666
No 109
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.31 E-value=0.00033 Score=56.60 Aligned_cols=104 Identities=16% Similarity=0.055 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccC----CCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ----RIPSD 229 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~----~~p~D 229 (271)
...+...+..+...|+.++|.+.++++++.+.+.. .....+-..+++++..+|++++|+. +++..+.. -.+..
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 44567778888888999999999999988876643 3334556678888888999999988 55432221 00122
Q ss_pred CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.+...|.+|..+++ ++|.++|++..++.+
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5567778889999999 999999999888776
No 110
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.30 E-value=0.00037 Score=64.48 Aligned_cols=97 Identities=10% Similarity=-0.060 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhc---------CChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh--------cchHHHhh-hhh
Q 024174 158 NAIKAEAVKQMKY---------GKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ--------GKYREALE-CNC 219 (271)
Q Consensus 158 ~~lk~~A~~L~kS---------gk~deave~Le~A~eka~~e~eeaynirmllvEilI~q--------Gk~~EAL~-~~~ 219 (271)
..+..++..+... |++++|++.+++|++...++ .++...++.++..+ |+|++|+. |+.
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD----GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 6688888889888 99999999999999754222 34566778888888 99999999 777
Q ss_pred hcccCCCC---CCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 220 LKDEQRIP---SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 220 L~~e~~~p---~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
....+ | .+...++..|.+|..+++ +||.++|++-.++-|
T Consensus 247 al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 247 AEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66656 7 889999999999999999 999999999999887
No 111
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.30 E-value=0.00039 Score=53.62 Aligned_cols=103 Identities=10% Similarity=-0.018 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCCCCCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQRIPSD 229 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~~p~D 229 (271)
....+..++......|+.++|.+.++++++.+++.. ...-.+-..++.++..+|+|++|+. +++ +.++. +.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 102 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL--PED 102 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--Ccc
Confidence 456688889999999999999999999999988753 3444566778999999999999999 554 33222 222
Q ss_pred ----CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 ----GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ----~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...+...|.+|..+++ ++|.+++++-.++.+
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3457788999999999 999999998766543
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.30 E-value=0.00093 Score=46.97 Aligned_cols=83 Identities=16% Similarity=-0.039 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.......+..+...|+.++|.+.++++++.. +.. ..+...++.++..+|++++|.+ ++...+.+ |.+.+....
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~ 119 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAY-SKAYGRMGLALSSLNKHVEAVAYYKKALELD--PDNETYKSN 119 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHH
Confidence 4567788888999999999999999999753 322 4567888999999999999999 66766666 888888888
Q ss_pred HHHHHHhhCh
Q 024174 236 KAIIYTMLNM 245 (271)
Q Consensus 236 k~IIYtmL~k 245 (271)
.|.+|..+++
T Consensus 120 l~~~~~~~~~ 129 (131)
T 2vyi_A 120 LKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 8888887765
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.30 E-value=0.0003 Score=56.58 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 195 YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 195 ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.-..++..+..+|+|++|+. |+.+...+ |.|...++..|.+|..+++ +||.+++++-.++-|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 3455677888889999999999 77888888 9999999999999999999 999999999999988
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.29 E-value=0.001 Score=57.05 Aligned_cols=101 Identities=16% Similarity=0.097 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC----------
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ---------- 224 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~---------- 224 (271)
+.+.+..+|..+...|+.++|++.++++++. +|.. ......++++++.+|++++|.. ++.+...+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~-~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQN-GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSC-HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcc-hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 4566788999999999999999999999863 4433 3678889999999999999988 55543211
Q ss_pred ----------------------CCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 225 ----------------------RIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 225 ----------------------~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-|.|...++--|.+|.-.++ +||..++++-.++-|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 137888888888999999999 999999998888776
No 115
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.26 E-value=0.00063 Score=62.95 Aligned_cols=98 Identities=14% Similarity=0.022 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh---------cchHHHhh-hhhhcccCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ---------GKYREALE-CNCLKDEQR 225 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~q---------Gk~~EAL~-~~~L~~e~~ 225 (271)
+.+....++..+...|++++|.+.+++|++. +|. ..+...++.++..+ |+|++|+. |++..+.+
T Consensus 136 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 209 (474)
T 4abn_A 136 LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD- 209 (474)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-
Confidence 3455677777777778888888887777753 344 36677777777777 88888887 66666555
Q ss_pred CCCCCCchhHHHHHHHhh--------Ch-HHHHHHHHHHHhhcC
Q 024174 226 IPSDGRFPFYKAIIYTML--------NM-EEAKKWWEEFAETID 260 (271)
Q Consensus 226 ~p~D~R~~L~k~IIYtmL--------~k-~EA~k~we~f~~lv~ 260 (271)
|.|...+...|.+|..+ ++ ++|.++|++-.++-|
T Consensus 210 -p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 210 -VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred -CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 77777778888888877 77 888888887777655
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.24 E-value=0.00045 Score=59.29 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHH------------------------------hh-cCCCcccchHHHHHHH
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYED------------------------------CK-NEPEPAYNVEMALVEI 204 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~ek------------------------------a~-~e~eeaynirmllvEi 204 (271)
+......+|..+...|+.++|.+.++++.+. +- .+| +..++.+.++.+
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~ 228 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQ 228 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHH
Confidence 4556788888888888888888887765321 11 122 334678899999
Q ss_pred HHHhcchHHHhh-hhhhcccCCCCCC--CCchhHHHHHHHhhCh-HHHHHHHHH
Q 024174 205 LIYQGKYREALE-CNCLKDEQRIPSD--GRFPFYKAIIYTMLNM-EEAKKWWEE 254 (271)
Q Consensus 205 lI~qGk~~EAL~-~~~L~~e~~~p~D--~R~~L~k~IIYtmL~k-~EA~k~we~ 254 (271)
+..+|++++|+. +.++...+ |.+ ...+..-+.+|..+|+ +||..++.+
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999999999999 88888877 777 6667777899999999 999988765
No 117
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.22 E-value=0.00073 Score=58.99 Aligned_cols=104 Identities=12% Similarity=-0.010 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhcc-----cCCCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKD-----EQRIP 227 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~-----e~~~p 227 (271)
....+..++......|++++|.+.+++|++.+++.+. ..-.+..-|+.++..+|+|++|+. +++..+ .+ |
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~ 258 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--D 258 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--h
Confidence 4556778899999999999999999999999876543 334456678999999999999999 555443 34 6
Q ss_pred CCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 228 SDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 228 ~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
...+.+...|.+|.-+++ ++|.+++++-.++.+.
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 668888999999999999 9999999999988773
No 118
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.21 E-value=0.00045 Score=46.93 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..-..++.++..+|+|++|++ ++...+.+ |.+...++..|.+|..+++ ++|.++|++..++-|
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 455678889999999999999 77766666 8888899999999999999 999999999998876
No 119
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.15 E-value=0.00034 Score=48.26 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+-..++.++..+|+|++|+. ++...+.+ |.+.+.++..|.+|..+++ ++|.++|++-.++.|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 344567888999999999999 66777666 8899999999999999999 999999999998877
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.14 E-value=0.0022 Score=54.23 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC--
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD-- 229 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D-- 229 (271)
+.+..+...+..+...|++++|.+.++++++.....+.. .-.....++.++..+|+|++|+. +++..+......|
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 445667788889999999999999999998765432211 11223457777888999999999 5543332211122
Q ss_pred --CCchhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 230 --GRFPFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 230 --~R~~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
++.+...|++|..+++ ++|.+++++-.++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~ 184 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3466788999999999 9999999987743
No 121
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00059 Score=47.88 Aligned_cols=61 Identities=23% Similarity=0.153 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-..++.++..+|+|++|++ |+...+.+ |.+...+...|.+|.-+++ ++|.+++++-.++.|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567888999999999999 77777777 8999999999999999999 999999999998887
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.11 E-value=0.0016 Score=46.37 Aligned_cols=83 Identities=12% Similarity=-0.075 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+.......+..+...|+.++|.+.++++++.. +. ...+...+++++..+|+|++|.+ ++...+.+ |.+...+.
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~ 122 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAAD 122 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHH
Confidence 35668888999999999999999999999753 22 33567788999999999999999 66666666 78877777
Q ss_pred HHHHHHHhhC
Q 024174 235 YKAIIYTMLN 244 (271)
Q Consensus 235 ~k~IIYtmL~ 244 (271)
..+.+|..++
T Consensus 123 ~l~~~~~~~~ 132 (133)
T 2lni_A 123 GYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 7777776554
No 123
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.11 E-value=0.0006 Score=62.68 Aligned_cols=97 Identities=8% Similarity=0.068 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 158 NAIKAEAVKQMKYGK-PEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk-~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
......+..+...|+ +++|++.+++|++.. |. .+.+-..++.++..+|+|++|+. |+...+.+ |++...+.+
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~ 205 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQH 205 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHH
Confidence 345555555666665 666666666666422 21 23334445555556667777766 55555555 666777777
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.|.+|.-+++ +||.+++++-.++-|
T Consensus 206 lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 206 RQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 7777777777 777777776666655
No 124
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.10 E-value=0.00085 Score=49.30 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
++......++..+...|++++|++.++++++.. |.. ..+...++.++..+|++++|+. ++.....+ |.|....
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 98 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNH-QALRVFYAMVLYNLGRYEQGVELLLKIIAET--SDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 466778999999999999999999999999653 332 4567778999999999999999 66666555 7777766
Q ss_pred hHHHHHHHhhCh
Q 024174 234 FYKAIIYTMLNM 245 (271)
Q Consensus 234 L~k~IIYtmL~k 245 (271)
-|+..|....+.
T Consensus 99 ~~~~ai~~~~~~ 110 (117)
T 3k9i_A 99 SYKQAILFYADK 110 (117)
T ss_dssp HTHHHHHHHTTC
T ss_pred HHHHHHHHHHHH
Confidence 777777666554
No 125
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.09 E-value=0.0012 Score=56.80 Aligned_cols=100 Identities=14% Similarity=0.002 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhccc---C-CCCCCCCc
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKDE---Q-RIPSDGRF 232 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~e---~-~~p~D~R~ 232 (271)
+..++..+...|+.++|.+.++++++.+.+... ....+...+++++..+|++++|+. +++..+. . ..+...+.
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 334444444445555555555555544433211 122333444555555555555555 3221111 0 00111334
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
++..|.+|.-+++ ++|.++|++..++.
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4445555555555 55555555555443
No 126
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.08 E-value=0.0016 Score=59.86 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcc-hHHHhh-hhhhcccCCCCCCCCc
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGK-YREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk-~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
++.......+..+...|+.++|++.++++++.. |. .+.+-..++.++..+|+ |++|+. |+.....+ |++...
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a 168 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN---AA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---cc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHH
Confidence 556677778888899999999999999998643 32 34455667888888997 999999 77777777 999999
Q ss_pred hhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+...|.+|..+++ +||.+++++-.++-|
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 9999999999999 999999999988877
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.06 E-value=0.0015 Score=55.26 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---cccchHHHHHHHHHHhcchHHHhh-hhh---hcccC-CC
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---PAYNVEMALVEILIYQGKYREALE-CNC---LKDEQ-RI 226 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---eaynirmllvEilI~qGk~~EAL~-~~~---L~~e~-~~ 226 (271)
.....+..++......|++++|++.+++|++.+++-+. ..-.+-.-++.++..+|+|++|+. +++ +..+. ..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 34566889999999999999999999999998875422 223355678889999999999999 553 22222 00
Q ss_pred CCCCCchhHHHHHHHhhC-h-HHHHHHHHHHHhhcC
Q 024174 227 PSDGRFPFYKAIIYTMLN-M-EEAKKWWEEFAETID 260 (271)
Q Consensus 227 p~D~R~~L~k~IIYtmL~-k-~EA~k~we~f~~lv~ 260 (271)
..=++.+...|.+|.-++ . ++|.++|++-.++..
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 111567889999999999 5 999999998665543
No 128
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.06 E-value=0.00086 Score=56.59 Aligned_cols=105 Identities=16% Similarity=0.053 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD--- 229 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D--- 229 (271)
....+...+..+...|++++|++.++++++.+.+.+ ...-.+-..++.++..+|++++|+. +++..+......|
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 345577888889999999999999999999887653 2334467788999999999999999 5543322100112
Q ss_pred -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.+...|.+|..+++ ++|.+++++-.++.+
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 5567788999999999 999999998877654
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.04 E-value=0.0019 Score=57.01 Aligned_cols=94 Identities=12% Similarity=-0.032 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
......++..+.+.|++++|++.+++|++.. |. ....-..++.++..+|+|++|+. ++.....+ |.+...+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~ 269 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD---SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQ 269 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 4567888999999999999999999999753 32 22455678899999999999999 77766666 889889999
Q ss_pred HHHHHHhhCh-HHH-HHHHHHHH
Q 024174 236 KAIIYTMLNM-EEA-KKWWEEFA 256 (271)
Q Consensus 236 k~IIYtmL~k-~EA-~k~we~f~ 256 (271)
.+.+|..+++ ++| ++.|++.-
T Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 270 LAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 888 44555543
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.02 E-value=0.00031 Score=54.32 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=68.7
Q ss_pred HHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHH-HHhhC
Q 024174 167 QMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAII-YTMLN 244 (271)
Q Consensus 167 L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~II-YtmL~ 244 (271)
+...|++++|++.++++++. +|.. ..+-..++.++..+|+|++|+. ++.....+ |.+...++..|.+ |...+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQN-SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQAS 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcC
Confidence 45678899999999999864 3322 3567789999999999999999 77777666 8888888889999 87888
Q ss_pred h---HHHHHHHHHHHhhcC
Q 024174 245 M---EEAKKWWEEFAETID 260 (271)
Q Consensus 245 k---~EA~k~we~f~~lv~ 260 (271)
+ ++|.+++++-.++-|
T Consensus 94 ~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCT
T ss_pred CcchHHHHHHHHHHHHhCC
Confidence 8 999999999988877
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.01 E-value=0.0023 Score=54.07 Aligned_cols=106 Identities=12% Similarity=0.069 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcc--cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174 154 AEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPA--YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 154 ~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eea--ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~ 230 (271)
.+....+...+..+...|++++|.+.++++.+.....+... ...-..++.++..+|+|++|+. +++..+......|.
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 45567788889999999999999999999887443332221 1122346777777899999999 66655432112332
Q ss_pred ----CchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 231 ----RFPFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 231 ----R~~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
+.+..-|++|.-+++ ++|.+++++-.+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 247778999999999 99999999877544
No 132
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.98 E-value=0.0018 Score=56.25 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC--cccchHHHHHHHHHHhcchHHHhh-hhhhcc---cCCC-CC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE--PAYNVEMALVEILIYQGKYREALE-CNCLKD---EQRI-PS 228 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e--eaynirmllvEilI~qGk~~EAL~-~~~L~~---e~~~-p~ 228 (271)
....+..++......|++++|.+.+++|++.+++.+. ..-.+..-++.++..+|+|++|++ +++..+ +... |.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 4556788889999999999999999999999876542 233456678999999999999999 554322 2111 55
Q ss_pred CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 229 DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 229 D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..+.+...|.+|.-+++ ++|.+++++-.++.+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 57778899999999999 999999999877654
No 133
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.84 E-value=0.0018 Score=46.70 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC---CchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDG---RFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~---R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
...++..++.+|+|++|+. ++.+.+.+ |.+. ..++..|.+|..+++ ++|.++|++..+..|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3457888999999999999 77888776 7777 688999999999999 9999999999998883
No 134
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.83 E-value=0.0021 Score=50.25 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH-hcchHHHhh-hhhhcccCCCCCCCCch
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY-QGKYREALE-CNCLKDEQRIPSDGRFP 233 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~-qGk~~EAL~-~~~L~~e~~~p~D~R~~ 233 (271)
+......++..+...|+.++|++.++.+.+. +| .. .+..+++.+... +++..+|+. ++...+.+ |.|...+
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p-~~-~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P~~~~~~ 111 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLE---YQ-DN-SYKSLIAKLELHQQAAESPELKRLEQELAAN--PDNFELA 111 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GC-CH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--TTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cC-Ch-HHHHHHHHHHHHhhcccchHHHHHHHHHHhC--CCCHHHH
Confidence 3455677777777888888888777766532 22 11 222223333222 233334554 44444444 6667777
Q ss_pred hHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 234 FYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 234 L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+..|.+|.-+++ +||.++|++-.++-|
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 777777777777 777777776666655
No 135
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.82 E-value=0.001 Score=50.51 Aligned_cols=63 Identities=19% Similarity=0.013 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+....++..++.+|+|++|++ ++.+...+ |.|...++..|.+|..+++ ++|.++|++=.++-|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 445667888999999999999 77888777 9999999999999999999 999999999988877
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.82 E-value=0.0052 Score=42.67 Aligned_cols=80 Identities=19% Similarity=0.103 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
.......+..+...|+.++|++.++++++.. +. ...+...++.++..+|++++|.. +++..+.+ |.+......
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 116 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQN 116 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---Cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 3457778888999999999999999998753 22 23456688999999999999999 66776666 777666665
Q ss_pred HHHHHHh
Q 024174 236 KAIIYTM 242 (271)
Q Consensus 236 k~IIYtm 242 (271)
-+.+|..
T Consensus 117 l~~~~~~ 123 (125)
T 1na0_A 117 LGNAKQK 123 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5666544
No 137
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.81 E-value=0.0017 Score=63.20 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+.......|..+...|++++|.+.++++++.. |. ...+...++.++..+|+|++|++ |++..+.+ |.+...++
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~ 505 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV---GW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKL 505 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 34556677888889999999999999988643 22 13455677888888899999988 77766666 77777777
Q ss_pred HHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|.+|..+++ +| .+++++-.++-|
T Consensus 506 ~lg~~~~~~g~~~~-~~~~~~al~~~P 531 (681)
T 2pzi_A 506 ALAATAELAGNTDE-HKFYQTVWSTND 531 (681)
T ss_dssp HHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred HHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence 77777777777 77 777777766655
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.77 E-value=0.0033 Score=49.83 Aligned_cols=86 Identities=15% Similarity=-0.031 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHH
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k 236 (271)
......+..+...|++++|++.++++++.. +. ...+-..++.++..+|+|++|++ ++.....+ |.+.......
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID---KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHH
Confidence 557778888999999999999999999753 22 23456778899999999999999 66666666 8888888888
Q ss_pred HHHHHhhCh-HHHH
Q 024174 237 AIIYTMLNM-EEAK 249 (271)
Q Consensus 237 ~IIYtmL~k-~EA~ 249 (271)
+.++..+++ ++++
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 999999988 7776
No 139
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.77 E-value=0.0024 Score=54.41 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHh-cchHHHhh-hhhhcccCCCCCC--
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQ-GKYREALE-CNCLKDEQRIPSD-- 229 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~q-Gk~~EAL~-~~~L~~e~~~p~D-- 229 (271)
....+..++..+...|++++|++.+++|++...+.+ ..+-..-.-++.++..+ |+|++|+. |++-.+-. |.+
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~~ 153 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCCC
Confidence 355688899999999999999999999999887653 23344556788899987 99999999 66433222 222
Q ss_pred ----CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 230 ----GRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 230 ----~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
...+.--|.+|.-+++ ++|.++|++-.++.|.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 2335556899999999 9999999999988873
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0017 Score=47.45 Aligned_cols=60 Identities=15% Similarity=0.015 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 199 MALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..++..+..+|+|++|+. |++..+.+ |.|...+...|.+|..+++ ++|.+++++-.++-|
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 456788889999999999 77777777 8999999999999999999 999999999998877
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.75 E-value=0.0017 Score=48.99 Aligned_cols=61 Identities=8% Similarity=-0.157 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 198 EMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 198 rmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-..++..++.+|+|++|+. ++.....+ |.+...++..|.+|..+++ ++|.++|++-.++-|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567888899999999999 77888777 9999999999999999999 999999999988877
No 142
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.0049 Score=54.11 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHH-----HHHHHHHHhcchHHHhh-hhhhc---ccCC---CCC
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEM-----ALVEILIYQGKYREALE-CNCLK---DEQR---IPS 228 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirm-----llvEilI~qGk~~EAL~-~~~L~---~e~~---~p~ 228 (271)
-.++......|++++|++.+++|++..++......+.+. -++.++..+|+|++|.. +++.. .+.. .+.
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 346778888999999999999999988765322222222 36788999999999998 44322 2211 122
Q ss_pred CCCchhHHHHHHHhhC--h-HHHHHHHHHHHhhcC
Q 024174 229 DGRFPFYKAIIYTMLN--M-EEAKKWWEEFAETID 260 (271)
Q Consensus 229 D~R~~L~k~IIYtmL~--k-~EA~k~we~f~~lv~ 260 (271)
....+.-+|+.+.-++ . ++|.++|++-.++-|
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 3344556676666555 4 899999999888877
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.73 E-value=0.0011 Score=50.32 Aligned_cols=59 Identities=20% Similarity=0.132 Sum_probs=52.2
Q ss_pred HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-++..+..+|+|++|+. |++-.+-+ |.+...+...|.+|..+++ ++|.++|++-.++-|
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 35677888999999999 77766666 9999999999999999999 999999999988876
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.73 E-value=0.0022 Score=49.92 Aligned_cols=64 Identities=16% Similarity=-0.018 Sum_probs=57.1
Q ss_pred cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 195 YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 195 ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+....++..+..+|+|++|+. ++.+...+ |.|...+...|.+|..+++ +||.++|++=.++-|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3455667889999999999999 77888777 9999999999999999999 999999999988877
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.72 E-value=0.0024 Score=44.17 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-..++.++..+|+|++|.+ ++...+.+ |.|...++..|.+|..+++ ++|.++|++-.++.|
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence 34567888899999999999 77777766 8899999999999999999 999999999988876
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.71 E-value=0.002 Score=49.60 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 195 YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 195 ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-+.-..++.+++.+|+|++|+. |++..+.+ |.+...+...|.+|..+++ ++|.++|++-.++-|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3445678889999999999999 77877777 8999999999999999999 999999999998877
No 147
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.62 E-value=0.002 Score=49.00 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=52.6
Q ss_pred HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..+..+..+|+|++|++ |++..+.+ |.|...+...|.+|..+++ ++|.++|++-.++-|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 35777888999999999 77777667 9999999999999999999 999999999988876
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.60 E-value=0.0026 Score=46.30 Aligned_cols=63 Identities=17% Similarity=0.052 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 196 NVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.-..++..+..+|+|++|+. ++.....+ |.+...+...|.+|..+++ ++|.+++++-.++.|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 445678889999999999999 77777777 8999999999999999999 999999999999877
No 149
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.0021 Score=56.46 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
+-.....|...++.++|++.+++|++.-.+++..-.++.+.++.+...+|++++|.+ +++..+.+ |.+...+...|.
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHH
Confidence 334444567778888888888888765333333334455556667777899999999 66666666 888888999999
Q ss_pred HHHhhCh-HHHHHHHHHHHhhcC
Q 024174 239 IYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 239 IYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+|..+++ ++|.+.+++-.+.-|
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCchHHHHHHHHHHHHhCC
Confidence 9999999 999999999888877
No 150
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.57 E-value=0.0099 Score=48.78 Aligned_cols=90 Identities=10% Similarity=-0.004 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~D~R 231 (271)
......++..+...|+.++|++.++++.+ .+. ......++.++.. +|++++|++ ++...+. .+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~ 75 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSN 75 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHH
Confidence 34455566666666666666666666665 111 1234445556666 666666666 4443322 2444
Q ss_pred chhHHHHHHHh----hCh-HHHHHHHHHHH
Q 024174 232 FPFYKAIIYTM----LNM-EEAKKWWEEFA 256 (271)
Q Consensus 232 ~~L~k~IIYtm----L~k-~EA~k~we~f~ 256 (271)
.+..-|.+|.- .++ ++|.++|++-.
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKAC 105 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence 55555666655 555 66666665543
No 151
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.52 E-value=0.0031 Score=49.32 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
.+-..|..+...|+.++|.+.++.+++..-++ ..+...++.+++.+|++++|+. ++.....+ | |.......+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~ 80 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIA 80 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHH
Confidence 46778889999999999999999888643222 3567888999999999999999 77777666 7 655444444
Q ss_pred HHHHhh-Ch-HHHHHHHHHHHhhcC
Q 024174 238 IIYTML-NM-EEAKKWWEEFAETID 260 (271)
Q Consensus 238 IIYtmL-~k-~EA~k~we~f~~lv~ 260 (271)
.++..- .. .+|.+++++-.++-|
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P 105 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANP 105 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHST
T ss_pred HHHHHhhcccchHHHHHHHHHHhCC
Confidence 343221 12 567888888877776
No 152
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.42 E-value=0.0076 Score=57.91 Aligned_cols=112 Identities=17% Similarity=0.088 Sum_probs=78.5
Q ss_pred CCChhhHHHH-------HHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CC--cccchHHHHHHHHHHhcchHHHhh-hh
Q 024174 151 GPSAEDVNAI-------KAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PE--PAYNVEMALVEILIYQGKYREALE-CN 218 (271)
Q Consensus 151 ~Ps~e~v~~l-------k~~A~~L~kSgk~deave~Le~A~eka~~e--~e--eaynirmllvEilI~qGk~~EAL~-~~ 218 (271)
-||.+.+..+ ...|..+...|++++|+++++++++..++- ++ ..-...-.|+.++..||+|+||+. |+
T Consensus 296 ~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 375 (490)
T 3n71_A 296 KPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR 375 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3577766653 345567888999999999999999987654 22 222334458899999999999998 55
Q ss_pred hhccc--CCCCCC----CCchhHHHHHHHhhCh-HHHHHHHHH----HHhhcCCC
Q 024174 219 CLKDE--QRIPSD----GRFPFYKAIIYTMLNM-EEAKKWWEE----FAETIDDE 262 (271)
Q Consensus 219 ~L~~e--~~~p~D----~R~~L~k~IIYtmL~k-~EA~k~we~----f~~lv~~~ 262 (271)
+..+- ...+.| +..+.=-|.+|.-+|+ +||+..+++ +..+.+++
T Consensus 376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 42211 011222 5566677999999999 999998874 55556644
No 153
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.39 E-value=0.0038 Score=53.52 Aligned_cols=103 Identities=17% Similarity=0.054 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcc---cCCC---CC
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKD---EQRI---PS 228 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~---e~~~---p~ 228 (271)
..+..++..+...|++++|.+.++++++.+...+.. .-.....++.++..+|+|++|+. +++..+ +... |.
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 345556666667777777777777777766554322 22334556677777777777777 443222 1100 11
Q ss_pred CCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 229 DGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 229 D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
....+...|.+|...++ ++|.+++++-.++.+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 12233446667777777 777777777666655
No 154
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.33 E-value=0.025 Score=48.45 Aligned_cols=104 Identities=8% Similarity=-0.055 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC----cccchHHHHHHHHHHhcchHHHhh-hhhhcccCC--CCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE----PAYNVEMALVEILIYQGKYREALE-CNCLKDEQR--IPSD 229 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e----eaynirmllvEilI~qGk~~EAL~-~~~L~~e~~--~p~D 229 (271)
...+..++..+...|++++|.+.++++++.+++... ..-.....+++++..+|++++|.. +.+..+... -+.+
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 445677888899999999999999999998876432 233455678999999999999999 555333220 0111
Q ss_pred -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...+...|.+|...+. ++|..++++-.++.+
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2346678889999999 999999999888765
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.32 E-value=0.018 Score=53.13 Aligned_cols=89 Identities=11% Similarity=-0.005 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
......+|.-+.+.|++++|++.+++|++...++ ...-..++.++..+|+|++|+. |+...+.+ |.+...+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~ 390 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQ 390 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 4556788999999999999999999999754222 2344567888999999999999 77777666 899999999
Q ss_pred HHHHHHhhCh-HHHHHH
Q 024174 236 KAIIYTMLNM-EEAKKW 251 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~ 251 (271)
.+.+|..+++ ++|++.
T Consensus 391 l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999999999 777653
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.32 E-value=0.004 Score=43.81 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-..++.++..+|+|++|+. ++...+.+ |.+...++..|.+|..+++ ++|.++|++-.++.|
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 34568889999999999999 77777666 8888999999999999999 999999999888766
No 157
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.31 E-value=0.0073 Score=54.79 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+...+-.+|..+.+.|++++|++.+++|++. +|. ....-..++.++..+|+|++|++ ++...+.+ |.|.....
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~ 345 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQA 345 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 3455778888899999999999999999963 332 23455677888999999999999 77666666 88887788
Q ss_pred HHHHHHHhhCh-HHHHHHH
Q 024174 235 YKAIIYTMLNM-EEAKKWW 252 (271)
Q Consensus 235 ~k~IIYtmL~k-~EA~k~w 252 (271)
..+.++..+++ ++|++.|
T Consensus 346 ~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 346 ELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 88888998888 7776654
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.30 E-value=0.0057 Score=44.44 Aligned_cols=64 Identities=14% Similarity=-0.038 Sum_probs=54.8
Q ss_pred cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 195 YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD---GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 195 ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D---~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
-+.-..++..+..+|+|++|++ ++...+.+ |.+ ...++..|.+|..+++ ++|.++|++..++.|
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence 3455678889999999999999 77777666 666 7888899999999999 999999999998877
No 159
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.27 E-value=0.032 Score=47.53 Aligned_cols=99 Identities=10% Similarity=-0.079 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
...-...+..+...|+.++|.+..+++++. +|.....+-+.+++++.-+|++++|.+ |+.....+ |.+...++-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~ 173 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVT 173 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence 344566777788889999999998888852 333222267778888888999999988 76666554 655444443
Q ss_pred HHHHH-HhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIY-TMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIY-tmL~k-~EA~k~we~f~~lv~ 260 (271)
.+.+. ..+++ ++|.+.|++-.++.|
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p 200 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYG 200 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33331 22566 888888888777766
No 160
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.25 E-value=0.0064 Score=52.77 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchH-HHHHHHHHHhcc---hHHHhh-hhhhcccCCCCCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVE-MALVEILIYQGK---YREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynir-mllvEilI~qGk---~~EAL~-~~~L~~e~~~p~D~R 231 (271)
...+-.++..+...|+.++|.+.+++|++.+++.....+... ..++.++..+|+ +++|+. ++.. +.. +....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~--~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLY--ADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCH--HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCH--HHHHH
Confidence 334445555555555555555555555555443221111111 224444444555 555554 2222 111 23344
Q ss_pred chhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+..-|.+|.-+++ ++|.++|++..++..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 56678999999999 999999999988876
No 161
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.13 E-value=0.014 Score=55.15 Aligned_cols=112 Identities=12% Similarity=0.146 Sum_probs=74.5
Q ss_pred CCChhhHHHHHH----H---HHHHHhcCChhHHHHHHHHHHHHhhcC--CCccc--chHHHHHHHHHHhcchHHHhh-hh
Q 024174 151 GPSAEDVNAIKA----E---AVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAY--NVEMALVEILIYQGKYREALE-CN 218 (271)
Q Consensus 151 ~Ps~e~v~~lk~----~---A~~L~kSgk~deave~Le~A~eka~~e--~eeay--nirmllvEilI~qGk~~EAL~-~~ 218 (271)
.|+.+++..+-. . .....+.|++++|+++++++++..++- ++-.. ...-.|+.++..||+|+||+. |+
T Consensus 285 ~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 364 (433)
T 3qww_A 285 PPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ 364 (433)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 467777765432 1 222234578999999999999987654 22222 223358999999999999999 65
Q ss_pred hhc---ccCC---CCCCCCchhHHHHHHHhhCh-HHHHHHHHH----HHhhcCCC
Q 024174 219 CLK---DEQR---IPSDGRFPFYKAIIYTMLNM-EEAKKWWEE----FAETIDDE 262 (271)
Q Consensus 219 ~L~---~e~~---~p~D~R~~L~k~IIYtmL~k-~EA~k~we~----f~~lv~~~ 262 (271)
+.. ..-+ -|.=+..+.=-|.+|.-+|+ +||+..+++ +..+.+++
T Consensus 365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~ 419 (433)
T 3qww_A 365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419 (433)
T ss_dssp HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 422 1111 02225666778999999999 999998765 44555544
No 162
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.05 E-value=0.013 Score=51.04 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCC---cccchHHHHHHHHHHhcchHHHhh-hhhhcc---cC-CC
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPE---PAYNVEMALVEILIYQGKYREALE-CNCLKD---EQ-RI 226 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~e---eaynirmllvEilI~qGk~~EAL~-~~~L~~---e~-~~ 226 (271)
+.......++......|+.++|.+.+++|++.+++.+. ..-..-..++.++..+|+|++|+. ++...+ +. -.
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 218 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND 218 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH
Confidence 44556788889999999999999999999999877543 234556678999999999999999 553222 21 00
Q ss_pred CCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 227 PSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 227 p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
+.-+..+..-|.+|..+++ ++|.+++++-.++.
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1124456678999999999 99999999877643
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.021 Score=49.54 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=69.9
Q ss_pred HhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCC----CCCCCchhHHHHHH
Q 024174 168 MKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRI----PSDGRFPFYKAIIY 240 (271)
Q Consensus 168 ~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~----p~D~R~~L~k~IIY 240 (271)
...|+.++|.+.++.+++.+++.. .....+..-+++++.-+|+|++|++ ++++..+-.. +.....++.+|-+|
T Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 345788899999998888877653 2334577789999999999999999 6665443211 22245788899999
Q ss_pred HhhCh-HHHHHHHHHHHhhcC
Q 024174 241 TMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 241 tmL~k-~EA~k~we~f~~lv~ 260 (271)
..++. ++|+...++=....+
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhh
Confidence 99999 999999888776654
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.93 E-value=0.01 Score=55.46 Aligned_cols=95 Identities=13% Similarity=0.001 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
......+|..+...|++++|++.+++|++. +|.. ...-..++.++..+|+|++|++ +++..+.+ |.|...+..
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~ 113 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKY-IKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMK 113 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 556888999999999999999999999864 3322 2345567889999999999999 77666656 888888888
Q ss_pred HHHH--HHhhCh-HHHHHHHHHHHh
Q 024174 236 KAII--YTMLNM-EEAKKWWEEFAE 257 (271)
Q Consensus 236 k~II--YtmL~k-~EA~k~we~f~~ 257 (271)
.+.+ |.-.++ +||.+.+++...
T Consensus 114 l~~~~~~~~~g~~~~A~~~~~~~~~ 138 (477)
T 1wao_1 114 YQECNKIVKQKAFERAIAGDEHKRS 138 (477)
T ss_dssp HHHHHHHHHHHHHCCC------CCS
T ss_pred HHHHHHHHHHHHHHHHhccccccch
Confidence 8888 444466 899988875443
No 165
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.90 E-value=0.008 Score=51.57 Aligned_cols=102 Identities=8% Similarity=-0.057 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC---
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD--- 229 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D--- 229 (271)
....+..++......|++++|++.+++|++...+.. ...-..-.-++.++.. |+|++|+. |++-.+-. +.+
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~~~~ 151 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHTTCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhCCCh
Confidence 355677888889999999999999999999886543 3334555668888877 99999999 66432221 222
Q ss_pred ---CCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 230 ---GRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 230 ---~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
...+.--|.+|.-+++ ++|.++|++-.++.+
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2334455889999999 999999999887765
No 166
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.90 E-value=0.033 Score=45.60 Aligned_cols=90 Identities=12% Similarity=-0.045 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCC
Q 024174 158 NAIKAEAVKQMK----YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPS 228 (271)
Q Consensus 158 ~~lk~~A~~L~k----Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~ 228 (271)
.....++..+.. .++.++|++.++++.+.- ..+....++.++.. +|++++|++ ++...+. .
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~ 108 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K 108 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C
Confidence 345566666666 777777777777776531 23344456666666 777777776 4443322 2
Q ss_pred CCCchhHHHHHHHh----hCh-HHHHHHHHHHHh
Q 024174 229 DGRFPFYKAIIYTM----LNM-EEAKKWWEEFAE 257 (271)
Q Consensus 229 D~R~~L~k~IIYtm----L~k-~EA~k~we~f~~ 257 (271)
+...+..-|.+|.- .++ ++|.++|++-.+
T Consensus 109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 44556666666666 666 777777665444
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.89 E-value=0.0092 Score=50.25 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh------cchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhC
Q 024174 172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ------GKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLN 244 (271)
Q Consensus 172 k~deave~Le~A~eka~~e~eeaynirmllvEilI~q------Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~ 244 (271)
..++|.+..+.|++..-++++.-.+...++.+.--++ +.++||.. |++-.+-+ |.+...+.+.|.+|+.++
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhc
Confidence 4577777777777543333333333444444433222 33679999 77766667 999999999999999985
Q ss_pred -----------h-HHHHHHHHHHHhhcC
Q 024174 245 -----------M-EEAKKWWEEFAETID 260 (271)
Q Consensus 245 -----------k-~EA~k~we~f~~lv~ 260 (271)
+ +||.++|++=.++-|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 6 999999998877776
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.83 E-value=0.017 Score=51.17 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
..-.+|..+.+.|++++|++.++++++.. |. ....-..++.++..+|+|++|+. ++.....+ |.|...+..-+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~ 305 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE---EK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELR 305 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 45678888999999999999999999753 32 12345667888999999999999 66666555 77777776667
Q ss_pred HHHHhhCh--HHHHHHHHHHHhhcC
Q 024174 238 IIYTMLNM--EEAKKWWEEFAETID 260 (271)
Q Consensus 238 IIYtmL~k--~EA~k~we~f~~lv~ 260 (271)
.++..... +++++.|.+.-..-|
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 77555444 888888888776665
No 169
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.61 E-value=0.033 Score=40.14 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhc
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLK 221 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~ 221 (271)
+....-.++..+...|++++|++.++++++.. |. ...+-..+++++..+|++++|.. +++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678889999999999999999999999753 32 22366778999999999999999 66443
No 170
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.45 E-value=0.027 Score=40.59 Aligned_cols=74 Identities=14% Similarity=-0.067 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
+......++..+...|++++|++.++++++.. |.. ......+++++..+|++++|.. ++...+.. |.+.....
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 91 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTY-SVAWKWLGKTLQGQGDRAGARQAWESGLAAA--QSRGDQQV 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccccHHH
Confidence 34567888999999999999999999999643 322 3355788999999999999999 66655443 44433333
Q ss_pred H
Q 024174 235 Y 235 (271)
Q Consensus 235 ~ 235 (271)
.
T Consensus 92 ~ 92 (115)
T 2kat_A 92 V 92 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 171
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.45 E-value=0.021 Score=51.82 Aligned_cols=101 Identities=15% Similarity=-0.009 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC-CC
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS-DG 230 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~-D~ 230 (271)
+++ ..-..+......+..++|++.|+.+. +.+.+ ...+...++.++.-.|+++||+. |++-...+.-|. ..
T Consensus 134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~----~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~ 208 (282)
T 4f3v_A 134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAG----KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR 208 (282)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHTTGG----GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH
T ss_pred chH-HHHHHHHHHHHcCCHHHHHHHHHHhh----ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH
Confidence 455 66777889999999999999998553 22322 34588999999999999999999 555542221033 22
Q ss_pred CchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 231 RFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
--.+++|+++-=+|+ +||..+|++=...-|
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 356899999999999 999999998887766
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.077 Score=45.93 Aligned_cols=103 Identities=9% Similarity=0.032 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhhcccC-CCCCC---
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ-RIPSD--- 229 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~-~~p~D--- 229 (271)
......+|..+...|++++|.+.|+++...+.... ...-++-+.+++++..+|+|++|.. ++...... ..+.+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 44567889999999999999999999998887643 3444556667777777999999998 55322111 01221
Q ss_pred -CCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 230 -GRFPFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 230 -~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
++.+.+-|++|.-.+. ++|.++|.+.-+..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3445555666655666 88888776655443
No 173
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.39 E-value=0.08 Score=48.50 Aligned_cols=100 Identities=11% Similarity=-0.036 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
........+..+...|+.++|.+.++++++. ++.....+-+.+++++..+|++++|.+ ++.-.+.. |.+...++
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~ 394 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYV 394 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHH
Confidence 4555667778888899999999999999863 333222356667777778899999998 66555443 55555566
Q ss_pred HHHHH-HHhhCh-HHHHHHHHHHHhhcC
Q 024174 235 YKAII-YTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 235 ~k~II-YtmL~k-~EA~k~we~f~~lv~ 260 (271)
..+.+ |..+++ ++|.+.|++-.+..|
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~p 422 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKYG 422 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHCC
Confidence 55555 445677 999999998888777
No 174
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.21 E-value=0.094 Score=44.63 Aligned_cols=87 Identities=10% Similarity=0.015 Sum_probs=67.6
Q ss_pred hcCCh-------hHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC-chhHHHHH
Q 024174 169 KYGKP-------EFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR-FPFYKAII 239 (271)
Q Consensus 169 kSgk~-------deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R-~~L~k~II 239 (271)
..|+. ++|.+.+++|++.+ +| .-..+-+.++.++..+|++++|.+ |+...+.+ |.|.. .++.-|-+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~--~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~ 143 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTL--LK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKF 143 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTT--TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHH
Confidence 45776 88999888888632 23 233577788999999999999999 88777655 88876 67777777
Q ss_pred HHhhCh-HHHHHHHHHHHhhcC
Q 024174 240 YTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 240 YtmL~k-~EA~k~we~f~~lv~ 260 (271)
+.-.+. ++|.+.|++-.++.|
T Consensus 144 ~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 144 ARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHhcCHHHHHHHHHHHHhcCC
Confidence 777778 999999999888766
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.16 E-value=0.03 Score=51.59 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhH
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFY 235 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~ 235 (271)
...++-+|..+. ++ |++.|++.++ ..........+++.++..+|++++|++ |++..+.+-.+.+...++.
T Consensus 71 ~~a~~~la~~~~--~~---a~~~l~~l~~----~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l 141 (310)
T 3mv2_B 71 GKVLDLYVQFLD--TK---NIEELENLLK----DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL 141 (310)
T ss_dssp HHHHHHHHHHHT--TT---CCHHHHHTTT----TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHhc--cc---HHHHHHHHHh----cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH
Confidence 344666666663 22 4555554442 222334445688888888888888888 7765444401255667777
Q ss_pred HHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 236 KAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 236 k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.+-||-.+|+ ++|++..+++++.-|
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 7888888888 888888888877654
No 176
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.04 E-value=0.029 Score=41.91 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC
Q 024174 156 DVNAIKAEAVKQMKYGK---PEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk---~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R 231 (271)
+.+.+-..|.-|..+++ .++|.+.|++|++ -+|... ...++++.++..+|+|++|.. ++.+.+.+ |.|.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~-rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~--p~~~~ 78 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNE-AALSLIANDHFISFRFQEAIDTWVLLLDSN--DPNLD 78 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTCC--CTTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcc
Confidence 34445555555555544 5889999998885 344433 356777888888999999999 55777776 55655
Q ss_pred c
Q 024174 232 F 232 (271)
Q Consensus 232 ~ 232 (271)
.
T Consensus 79 ~ 79 (93)
T 3bee_A 79 R 79 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 177
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.02 E-value=0.042 Score=51.54 Aligned_cols=106 Identities=16% Similarity=0.037 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC--CCccc--chHHHHHHHHHHhcchHHHhh-hhhhccc--CCCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE--PEPAY--NVEMALVEILIYQGKYREALE-CNCLKDE--QRIPSD 229 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e--~eeay--nirmllvEilI~qGk~~EAL~-~~~L~~e--~~~p~D 229 (271)
+..+.....++...|++++|+++.+++++..++- ++-.+ ...-.|+.++..||+|+||+. |++..+- ...+.+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 4445566777888999999999999999876543 22222 233457888999999999999 6643321 011222
Q ss_pred ----CCchhHHHHHHHhhCh-HHHHHHHH----HHHhhcCCC
Q 024174 230 ----GRFPFYKAIIYTMLNM-EEAKKWWE----EFAETIDDE 262 (271)
Q Consensus 230 ----~R~~L~k~IIYtmL~k-~EA~k~we----~f~~lv~~~ 262 (271)
+..+.=-|.+|.-+|+ +||+..++ .+..+.+++
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 5556667999999999 99998766 455556644
No 178
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.82 E-value=0.048 Score=40.34 Aligned_cols=69 Identities=13% Similarity=0.017 Sum_probs=56.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCC---CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEP---EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~---eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
.++..+...++++.|++-++.|++...++. ..-.++-..++..+..+|++++|+. ++...+-+ |.|.+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~~~ 82 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRA 82 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHH
Confidence 567778889999999999999998876552 3455777889999999999999999 66766666 888555
No 179
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.79 E-value=0.044 Score=50.45 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCC------CCCCc
Q 024174 161 KAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIP------SDGRF 232 (271)
Q Consensus 161 k~~A~~L~kSgk~deave~Le~A~eka~~e~-eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p------~D~R~ 232 (271)
.-+|-.+...|+.++|++.|++.++ .++ ...-+...++|||++.+|++++|.+ ++.+.+.+ | .+.+.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~--~d~~~~~d~~l~ 178 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI--EDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccccccchHHHH
Confidence 3566666677999999999998763 222 3566778899999999999999999 66666555 5 34678
Q ss_pred hhHHHHHHHhhC--h-HHHHHHHHHHHhhcC
Q 024174 233 PFYKAIIYTMLN--M-EEAKKWWEEFAETID 260 (271)
Q Consensus 233 ~L~k~IIYtmL~--k-~EA~k~we~f~~lv~ 260 (271)
.|..|.|+...+ + .+|-..|++..+..|
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 899999999988 6 888666666544443
No 180
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.42 E-value=0.21 Score=37.17 Aligned_cols=65 Identities=17% Similarity=-0.014 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHhcc---hHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcCC
Q 024174 195 YNVEMALVEILIYQGK---YREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 195 ynirmllvEilI~qGk---~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~~ 261 (271)
-++...+++.++++++ .++|.+ +++-...+ |.+.|..++.|.+|-..++ ++|-.+|++--+.-|+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3677889999999876 789988 77766667 9999999999999999999 9999999999888773
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.41 E-value=0.023 Score=43.42 Aligned_cols=69 Identities=16% Similarity=0.070 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~ 230 (271)
.....-..|..+.+.|++++|++.++.+++. +|.. ...-..++.++..+|+|++|+. |+....-+ |.|.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR---EETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 4566788899999999999999999999975 3321 2345567888999999999999 66655555 6653
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.02 E-value=0.048 Score=46.58 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
.-..++..+..+|+|++|+. |+.....+ |.+...+...|.+|.-+++ ++|.+.+++-.++-|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 69 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34567888999999999999 77877777 8999999999999999999 999999999888766
No 183
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.81 E-value=0.072 Score=48.34 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC-CCCchhHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS-DGRFPFYK 236 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~-D~R~~L~k 236 (271)
.-...|..|...|++++|.+.|+.... .+|... .+-.++-+++-.|+|++|+. ++...... .|- ..-.+++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~L 177 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPV---AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHH
Confidence 345678899999999999999986653 234333 66777778888999999998 44332211 010 02357888
Q ss_pred HHHHHhhCh-HHHHHHHHHHH
Q 024174 237 AIIYTMLNM-EEAKKWWEEFA 256 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~we~f~ 256 (271)
|.++--||. +||..||++--
T Consensus 178 G~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 999999999 99999999754
No 184
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.26 E-value=0.2 Score=46.10 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=44.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 164 AVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 164 A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
+..|-+.|+.++|.+.++.++ |.+|.++ +.|.+++|+|++.|+|+.|++ .+-+.+-+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~V---R~~P~da-~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAI---KASPKDA-SLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHH---HTCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHHHHH---HhCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 346778899999999999887 4566554 689999999999999999998 55333333
No 185
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=91.13 E-value=0.31 Score=44.57 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=47.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHH-HhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH
Q 024174 164 AVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILI-YQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT 241 (271)
Q Consensus 164 A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI-~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt 241 (271)
+.-+...|+.++|.+.++.|++.. + ..+.+-+..+.+.. .+|++++|.+ |+...+.. |.+...++--+-++.
T Consensus 363 ~~~~~~~~~~~~A~~~~~~Al~~~---~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 363 MKFARRAEGIKSGRMIFKKAREDA---R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCT---T-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcc---C-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 333445566777777777666421 1 11222222222211 3677777777 55544444 555444444444455
Q ss_pred hhCh-HHHHHHHHHHHhhcC
Q 024174 242 MLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 242 mL~k-~EA~k~we~f~~lv~ 260 (271)
-+|+ ++|..+|++..+..|
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCC
T ss_pred hCCCHhhHHHHHHHHHhccC
Confidence 5566 777777777666543
No 186
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.58 E-value=1.1 Score=41.30 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC-Ccc-------------cchHH----HHHHHHHHhcchHHHhh-hhh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP-EPA-------------YNVEM----ALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~-eea-------------ynirm----llvEilI~qGk~~EAL~-~~~ 219 (271)
.+-..+......|+.++|.+.|+.|+..++-+. .+. .+.++ .+++.+.-.|++++|+. +..
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344445555567899999999999998887552 110 11222 34566667899999998 778
Q ss_pred hcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 220 LKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 220 L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+...+ |-|-+.+-.-+..|.-.|. .||.++++++++..-
T Consensus 197 ~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 197 LTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 88888 8877766666666777777 999999999998754
No 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.04 E-value=0.61 Score=44.01 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=52.1
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchH---HHHHHHHHHhcchHHHhh-hhh
Q 024174 148 VPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVE---MALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 148 ~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynir---mllvEilI~qGk~~EAL~-~~~ 219 (271)
.|.+|+ -...+..+|......|++++|.++.+++++..++- +.+-.++- .=|+.++..||+|+||+. |++
T Consensus 333 g~~Hp~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 333 EDSNVY--MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp CTTSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhchH--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 444442 34557788999999999999999999999887753 43333333 247888999999999998 654
No 188
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=89.46 E-value=0.85 Score=36.91 Aligned_cols=12 Identities=25% Similarity=0.058 Sum_probs=6.4
Q ss_pred ChhHHHHHHHHH
Q 024174 172 KPEFAVTLLKKV 183 (271)
Q Consensus 172 k~deave~Le~A 183 (271)
+.++|++.+++|
T Consensus 68 ~~~~A~~~~~~A 79 (212)
T 3rjv_A 68 DYPQARQLAEKA 79 (212)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 455555555555
No 189
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=89.42 E-value=0.81 Score=37.01 Aligned_cols=91 Identities=14% Similarity=0.027 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhc----chHHHhh-hhhhcccCCCCCCC
Q 024174 156 DVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQG----KYREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qG----k~~EAL~-~~~L~~e~~~p~D~ 230 (271)
+....-.++..+...++.++|++.+++|.+. .++ .....|+.++.. | ++++|++ ++.-.+ +.+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~----~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~ 85 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDG----DALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSK 85 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCH
Confidence 3456778888888899999999999999752 122 233345555554 5 7888887 444332 2344
Q ss_pred CchhHHHHHHHh----hCh-HHHHHHHHHHHh
Q 024174 231 RFPFYKAIIYTM----LNM-EEAKKWWEEFAE 257 (271)
Q Consensus 231 R~~L~k~IIYtm----L~k-~EA~k~we~f~~ 257 (271)
.....-|.+|.- ... ++|.+||++=.+
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 455555666643 444 777777665443
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.82 E-value=0.82 Score=43.84 Aligned_cols=108 Identities=8% Similarity=-0.079 Sum_probs=68.2
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchH---HHHHHHHHHhcchHHHhh-hhhhc-
Q 024174 148 VPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVE---MALVEILIYQGKYREALE-CNCLK- 221 (271)
Q Consensus 148 ~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynir---mllvEilI~qGk~~EAL~-~~~L~- 221 (271)
.+.+| .-...+..+|......|++++|.++.+++++..++- +.+-.++- .-|+.++..||+|+||.. |++-.
T Consensus 344 g~~Hp--~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 344 ADTNL--YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp CTTSH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555 235558889999999999999999999999887653 33333332 347888899999999999 66421
Q ss_pred ------ccCC-CCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhc
Q 024174 222 ------DEQR-IPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETI 259 (271)
Q Consensus 222 ------~e~~-~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv 259 (271)
+.+- .-.|.+.-| +-.|.-+++ ++|+.-+.+=|+..
T Consensus 422 i~~~~lG~~Hp~~~~~~~~l--~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 422 ILLVTHGPSHPITKDLEAMR--MQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHTCTTSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 001111222 223444556 77777766666543
No 191
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=88.08 E-value=1.9 Score=39.00 Aligned_cols=77 Identities=13% Similarity=0.005 Sum_probs=36.7
Q ss_pred cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHh--
Q 024174 170 YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTM-- 242 (271)
Q Consensus 170 Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtm-- 242 (271)
.++.++|++.+++|.+. . ..+....|+.++.. ++++++|++ |+...+. .+......-|.+|.-
T Consensus 92 ~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~ 161 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK---G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGD 161 (490)
T ss_dssp CCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCC
Confidence 45555555555555431 1 11223344555554 556666665 3333322 233444555555544
Q ss_pred --hCh-HHHHHHHHHHH
Q 024174 243 --LNM-EEAKKWWEEFA 256 (271)
Q Consensus 243 --L~k-~EA~k~we~f~ 256 (271)
.+. ++|.+||++-.
T Consensus 162 g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 162 GVTRDYVMAREWYSKAA 178 (490)
T ss_dssp SSCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 344 66666665543
No 192
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=87.63 E-value=1.4 Score=41.26 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=53.1
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchHH---HHHHHHHHhcchHHHhh-hhh
Q 024174 146 YTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVEM---ALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 146 ~~~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynirm---llvEilI~qGk~~EAL~-~~~ 219 (271)
...|.+| .-...+..+|......|++++|+++.+++++..++- +.+-.++-+ -|+.++..||+|+||+. |++
T Consensus 320 ~lg~~h~--~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 320 RLPDINI--YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp CCCTTSH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCccch--HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3345555 235568888889999999999999999999887653 433333333 46778888999999998 554
No 193
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.86 E-value=0.73 Score=38.59 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 156 DVNAIKAEAVKQMKYG---KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSg---k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
+.+..-..|.-|.+|. ..++++++|++.++.- .|+.-++.-..|+=-++..|+|++|++ ++.+.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4566778888899998 5559999999888632 254445555566666688999999999 55676666
No 194
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.70 E-value=1 Score=42.03 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh---hcccCCCCCC----CC
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC---LKDEQRIPSD----GR 231 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~---L~~e~~~p~D----~R 231 (271)
...+|.-..+.|+.++|++.+.++.++|.... .-=++-+.++++.+..|+|..|.. +.. +.++. .| .|
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~---~d~~~~~~ 209 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG---GDWERRNR 209 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---CCTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC---CCHHHHHH
Confidence 56788888899999999999999999886543 333566667777777999999988 443 33332 33 46
Q ss_pred chhHHHHHHHhhCh-HHHHHHHH
Q 024174 232 FPFYKAIIYTMLNM-EEAKKWWE 253 (271)
Q Consensus 232 ~~L~k~IIYtmL~k-~EA~k~we 253 (271)
...|+|+++--.++ .+|.++|-
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~ 232 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLV 232 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHH
Confidence 77899999888888 88887653
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=86.14 E-value=2.8 Score=37.85 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=60.0
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCCCC
Q 024174 160 IKAEAVKQMK----YGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 160 lk~~A~~L~k----Sgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~D~ 230 (271)
.-.++..... .++.++|++.+++|.+. + ..+....|+.++.. ++++++|++ ++...+. .|.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~ 183 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNV 183 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCH
Confidence 3444555555 67888888888887652 1 23455667777776 788999998 5555543 366
Q ss_pred CchhHHHHHHHh----hCh-HHHHHHHHHHHh
Q 024174 231 RFPFYKAIIYTM----LNM-EEAKKWWEEFAE 257 (271)
Q Consensus 231 R~~L~k~IIYtm----L~k-~EA~k~we~f~~ 257 (271)
.....-|.+|.- .+. ++|.+||++=.+
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 677777888876 666 889888887544
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=85.63 E-value=0.76 Score=38.48 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcchHHHhh-hhhhcccCCCCC-------CCC-----chhHHHHHHHhhCh-HHHHHHHHHHHhh
Q 024174 199 MALVEILIYQGKYREALE-CNCLKDEQRIPS-------DGR-----FPFYKAIIYTMLNM-EEAKKWWEEFAET 258 (271)
Q Consensus 199 mllvEilI~qGk~~EAL~-~~~L~~e~~~p~-------D~R-----~~L~k~IIYtmL~k-~EA~k~we~f~~l 258 (271)
+..+..+...|+|+||+. |..-..-+ |. |.. .|.-+|.++.-|++ +||-.++++=.++
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456777888999999999 77533333 44 333 78889999999999 9999999988777
No 197
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=84.67 E-value=0.76 Score=43.58 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
...+|..+...|+.++|...++.|++.- +. ...-.+++.++.+.|++++|.. |++-..-+ |.+-..+||+.+
T Consensus 280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~~~~l 352 (372)
T 3ly7_A 280 YQIKAVSALVKGKTDESYQAINTGIDLE---MS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYWIENG 352 (372)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHHHhCc
Confidence 4445555556689999999999888752 32 1223678888889999999998 76555455 888777888765
Q ss_pred H
Q 024174 239 I 239 (271)
Q Consensus 239 I 239 (271)
+
T Consensus 353 ~ 353 (372)
T 3ly7_A 353 I 353 (372)
T ss_dssp S
T ss_pred e
Confidence 4
No 198
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.69 E-value=2.1 Score=40.47 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=60.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHH--HHHhcchHHHhh-hhh-hcccCCCCCC----CCch
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEI--LIYQGKYREALE-CNC-LKDEQRIPSD----GRFP 233 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEi--lI~qGk~~EAL~-~~~-L~~e~~~p~D----~R~~ 233 (271)
.++.-+...|++.+|.+++++..+.|++.....+-+++.+.|+ +..+|++.++-. +.. ..--+.++.| ++..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5667778899999999999999999987433445555555444 444788777765 431 1111111233 5667
Q ss_pred hHHHHHHH-hhCh-HHHHHHH
Q 024174 234 FYKAIIYT-MLNM-EEAKKWW 252 (271)
Q Consensus 234 L~k~IIYt-mL~k-~EA~k~w 252 (271)
.|.||+|- --++ ++|..+|
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHH
Confidence 88888887 7777 7776665
No 199
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=83.49 E-value=7.6 Score=36.83 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHH
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAI 238 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~I 238 (271)
.-.+...+-+.|+.++|++++++..+ ....+--..=-.|+..+...|++++|.+ ++++.+....| -..-|.++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~---~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P---d~~ty~~L 181 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKA---FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP---EEPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC---CHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---CHHHHHHH
Confidence 34455567788999999999997643 2222111112346778888999999999 77888776434 24678888
Q ss_pred HHHhhC--h-HHHHHHHHHHHhhc
Q 024174 239 IYTMLN--M-EEAKKWWEEFAETI 259 (271)
Q Consensus 239 IYtmL~--k-~EA~k~we~f~~lv 259 (271)
|-.... + ++|.+.+++.++..
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhC
Confidence 877654 4 99999999988754
No 200
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=83.42 E-value=1.5 Score=36.75 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh---cchHHHhh-hhhhcccCCCCCCCCchhH-HHHHHHhhCh-HH
Q 024174 174 EFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ---GKYREALE-CNCLKDEQRIPSDGRFPFY-KAIIYTMLNM-EE 247 (271)
Q Consensus 174 deave~Le~A~eka~~e~eeaynirmllvEilI~q---Gk~~EAL~-~~~L~~e~~~p~D~R~~L~-k~IIYtmL~k-~E 247 (271)
.+.++.++++|+........-.+.+.-++=-||.- +++++|.. .+++.+++ .|.+-|=+|| =|+-|.=++. ++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 34456666677665443334555666666667764 48999999 77777765 1434455555 4888888888 99
Q ss_pred HHHHHHHHHhhcC
Q 024174 248 AKKWWEEFAETID 260 (271)
Q Consensus 248 A~k~we~f~~lv~ 260 (271)
|.++++..-+.-|
T Consensus 90 A~~y~~~lL~ieP 102 (152)
T 1pc2_A 90 ALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999888
No 201
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=83.28 E-value=4.1 Score=37.17 Aligned_cols=86 Identities=9% Similarity=-0.003 Sum_probs=39.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHhc---chHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 163 EAVKQMKYGKPEFAVTLLKKVYEDCKNE-PEPAYNVEMALVEILIYQG---KYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 163 ~A~~L~kSgk~deave~Le~A~eka~~e-~eeaynirmllvEilI~qG---k~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
++......+..+++++..+..++.+.+. +. ....|+.++..+| ++++|++ ++.-.+.+ +.++..+..-|
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg 220 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAALNTTDI----CYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence 3444444455555554444444433322 22 4445555555566 6666666 44444333 34444334445
Q ss_pred HHHHhh----Ch-HHHHHHHHH
Q 024174 238 IIYTML----NM-EEAKKWWEE 254 (271)
Q Consensus 238 IIYtmL----~k-~EA~k~we~ 254 (271)
.+|.-. .. ++|.+||++
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHH
Confidence 555322 22 555555544
No 202
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=81.93 E-value=1.8 Score=39.46 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHHHHHHHHhhcCCCcc--cchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc
Q 024174 159 AIKAEAVKQMKYG---KPEFAVTLLKKVYEDCKNEPEPA--YNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF 232 (271)
Q Consensus 159 ~lk~~A~~L~kSg---k~deave~Le~A~eka~~e~eea--ynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~ 232 (271)
..-.++..+.+.| +.++|++.+++|.+. ..+... +++..++.+-....+++++|++ |+... |.|...
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR--GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHH
Confidence 4566676777788 888888888887742 122333 3444333332333367888887 44443 345566
Q ss_pred hhHHHHH-H--HhhCh-HHHHHHHHHH
Q 024174 233 PFYKAII-Y--TMLNM-EEAKKWWEEF 255 (271)
Q Consensus 233 ~L~k~II-Y--tmL~k-~EA~k~we~f 255 (271)
...-|.+ | .-.+. ++|.+||++=
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 6666766 4 33444 7777777653
No 203
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.00 E-value=7.6 Score=33.23 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=54.3
Q ss_pred CCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc---CC------------------CcccchHHHHHHHHHHhc
Q 024174 151 GPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN---EP------------------EPAYNVEMALVEILIYQG 209 (271)
Q Consensus 151 ~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~---e~------------------eeaynirmllvEilI~qG 209 (271)
.+.+.....+-+.|.-+-..|.+..|...++.|+..++. .+ ..+.+++--|++-++-.|
T Consensus 57 ~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~ 136 (167)
T 3ffl_A 57 FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK 136 (167)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHC
Confidence 344566778999999999999999999999999877763 11 234579999999999999
Q ss_pred chHHHhh
Q 024174 210 KYREALE 216 (271)
Q Consensus 210 k~~EAL~ 216 (271)
++++|+.
T Consensus 137 ~~~~Ai~ 143 (167)
T 3ffl_A 137 QDKDAIA 143 (167)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9999995
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=80.45 E-value=4.2 Score=30.97 Aligned_cols=86 Identities=13% Similarity=-0.051 Sum_probs=59.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH----hcchHHHhh-hhhhcccCCCCCCCCchhHHH
Q 024174 163 EAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY----QGKYREALE-CNCLKDEQRIPSDGRFPFYKA 237 (271)
Q Consensus 163 ~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~----qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~ 237 (271)
++......+..++|++.+++|.+. .++. -...|+.++.. ++++++|++ ++.-.+. .|......-|
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~----a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a~~~Lg 100 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGN----GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDGCLILG 100 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHH----HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHH----HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHHHHHHH
Confidence 666666667778899999988763 2233 33455666666 889999999 5543332 4556677778
Q ss_pred HHHHh----hCh-HHHHHHHHHHHhh
Q 024174 238 IIYTM----LNM-EEAKKWWEEFAET 258 (271)
Q Consensus 238 IIYtm----L~k-~EA~k~we~f~~l 258 (271)
.+|.- ... ++|.+||++=.+.
T Consensus 101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 101 YKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 88877 556 9999999875543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=78.75 E-value=1.7 Score=36.32 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHHhhcCCCcccchHHHHHHH-------HHHhcchHHHhh-h
Q 024174 156 DVNAIKAEAVKQMKYGKP----------EFAVTLLKKVYEDCKNEPEPAYNVEMALVEI-------LIYQGKYREALE-C 217 (271)
Q Consensus 156 ~v~~lk~~A~~L~kSgk~----------deave~Le~A~eka~~e~eeaynirmllvEi-------lI~qGk~~EAL~-~ 217 (271)
+.+.+......|...++. ++|++.+++|++.--+..+.-+++..++... -+-.|+|++|++ |
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~ 114 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 114 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHH
Confidence 344555555555555443 3555555555543222234445555555443 122479999999 6
Q ss_pred hhhcccCCCCCC
Q 024174 218 NCLKDEQRIPSD 229 (271)
Q Consensus 218 ~~L~~e~~~p~D 229 (271)
+.-++.+ |.+
T Consensus 115 ~kAl~l~--P~~ 124 (158)
T 1zu2_A 115 QQAVDEQ--PDN 124 (158)
T ss_dssp HHHHHHC--TTC
T ss_pred HHHHHhC--CCC
Confidence 6666666 665
No 206
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.92 E-value=3.3 Score=33.74 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCChhH---HHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHhcchHHHhh-hhhhcccC
Q 024174 158 NAIKAEAVKQMKYGKPEF---AVTLLKKVYEDCKNE-PEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQ 224 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~de---ave~Le~A~eka~~e-~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~ 224 (271)
+..-..|..|.+|...+. ++.+|++-++ ++ |+.-|+--..||-=++..|+|++|++ |+.|...+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLP---KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 457778889999988887 8888887664 34 55677888888888888999999999 66666665
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=77.62 E-value=4.3 Score=39.16 Aligned_cols=91 Identities=11% Similarity=0.002 Sum_probs=65.3
Q ss_pred HHHHhcC--ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhc-chHHHhh-hhhhcccCCCCCCCCchhHHHHHH
Q 024174 165 VKQMKYG--KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQG-KYREALE-CNCLKDEQRIPSDGRFPFYKAIIY 240 (271)
Q Consensus 165 ~~L~kSg--k~deave~Le~A~eka~~e~eeaynirmllvEilI~qG-k~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIY 240 (271)
..|..-+ ..+++++..+++++.-.++ -.+.+-|-.+++ ..| .+++|+. ++...+.+ |+|.-.+-|++.++
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~---~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll 188 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAA---QAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH---HTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhcccc-ccHHHHHHHHHH---HcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHH
Confidence 3444556 4589999999998743222 344444443333 236 8999999 56888888 99999999999998
Q ss_pred Hhh--------------Ch-HHHHHHHHHHHhhcCC
Q 024174 241 TML--------------NM-EEAKKWWEEFAETIDD 261 (271)
Q Consensus 241 tmL--------------~k-~EA~k~we~f~~lv~~ 261 (271)
.-+ +. +||-++.++-..+-|.
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp HHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred HhhcccccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 876 45 8888888888877773
No 208
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=77.57 E-value=16 Score=32.66 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhc--chHHHhh-hhhhcccCCCCCCC
Q 024174 155 EDVNAIKAEAVKQMKYGKPE-FAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQG--KYREALE-CNCLKDEQRIPSDG 230 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~d-eave~Le~A~eka~~e~eeaynirmllvEilI~qG--k~~EAL~-~~~L~~e~~~p~D~ 230 (271)
+++..+.+....++++|+++ +|++..+.+++..- +-..+-|.| .+++...| +++|||+ +..+...+ |++.
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R---~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y 103 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGINELA-SHYTIWIYR---FNILKNLPNRNLYDELDWCEEIALDN--EKNY 103 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHH---HHHHHTCTTSCHHHHHHHHHHHHHHC--TTCC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHH---HHHHHHcccccHHHHHHHHHHHHHHC--cccH
Confidence 56778888888888888885 78888888875431 123455555 34445556 9999999 66777778 9999
Q ss_pred CchhHHHHHH----Hhh---Ch-HHHHHHHHHHHhhcC
Q 024174 231 RFPFYKAIIY----TML---NM-EEAKKWWEEFAETID 260 (271)
Q Consensus 231 R~~L~k~IIY----tmL---~k-~EA~k~we~f~~lv~ 260 (271)
-..-+++.|. .-+ +. +++-++.++.-+.-|
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC
Confidence 8888888888 666 56 888888888877766
No 209
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=75.29 E-value=11 Score=35.76 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhC--h-HHHHHHHHHHHh
Q 024174 200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLN--M-EEAKKWWEEFAE 257 (271)
Q Consensus 200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~--k-~EA~k~we~f~~ 257 (271)
.|+..++..|++++|++ ++++.+....| ...-|-.+|..... + ++|.+.|++-.+
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQP---RLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 46777888899999999 77887766433 35678888877654 4 888888887654
No 210
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.13 E-value=8.2 Score=32.35 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChh---HHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174 158 NAIKAEAVKQMKYGKPE---FAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD 229 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~d---eave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D 229 (271)
+..-..|..|.+|...+ +++.+|++-+. .+++.-|+---.||-=+...|+|++|++ |+.|...+ |.+
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e--P~n 110 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNN 110 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--CCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc
Confidence 34556777888887665 57777776664 6777888888888888889999999999 55666665 544
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=74.11 E-value=5.8 Score=38.24 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=19.3
Q ss_pred hHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhC-h-HHHHHHHHH
Q 024174 211 YREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLN-M-EEAKKWWEE 254 (271)
Q Consensus 211 ~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~-k-~EA~k~we~ 254 (271)
|+||+. |+.+.+.+ |+++..+-|++.+..-++ . +||-++.++
T Consensus 125 ~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~ 169 (567)
T 1dce_A 125 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 345554 44444444 455555555555555554 3 444443333
No 212
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.96 E-value=10 Score=31.46 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCChh---HHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCC
Q 024174 158 NAIKAEAVKQMKYGKPE---FAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSD 229 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~d---eave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D 229 (271)
+..-..|..|.+|...+ +++++|++-++ .+++.-|+.--.||-=+...|+|++|++ ++.|.+.+ |.+
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~---~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e--P~N 111 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNN 111 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--TTC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--CCC
Confidence 34556777888886653 67888887664 5677778888888888888999999999 55666555 544
No 213
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.57 E-value=11 Score=35.29 Aligned_cols=95 Identities=13% Similarity=0.062 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCC--CcccchHHHHHHHHHHhcchHHHhh-hhhh----cccCCCCCC-
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEP--EPAYNVEMALVEILIYQGKYREALE-CNCL----KDEQRIPSD- 229 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~--eeaynirmllvEilI~qGk~~EAL~-~~~L----~~e~~~p~D- 229 (271)
..-..+|.-....|++++|.++|.+-..-+...- .+-=++-++.+++++.+++|..|-. .... .+.. .+.|
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~l 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-KYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHH
Confidence 3346788888899999999999998654443322 2333444555555556899998877 3332 1221 0222
Q ss_pred -CCchhHHHHHHHhhCh-HHHHHHHH
Q 024174 230 -GRFPFYKAIIYTMLNM-EEAKKWWE 253 (271)
Q Consensus 230 -~R~~L~k~IIYtmL~k-~EA~k~we 253 (271)
.+.+.|.|++|.-=++ .||-++|-
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5778888888877777 77766553
No 214
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=69.98 E-value=12 Score=33.62 Aligned_cols=86 Identities=6% Similarity=0.092 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHH-Hh---cchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-
Q 024174 172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILI-YQ---GKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM- 245 (271)
Q Consensus 172 k~deave~Le~A~eka~~e~eeaynirmllvEilI-~q---Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k- 245 (271)
..+++++.++.+++..-+ .-.+-+-|-.+.+-++ .. +++++++. |+.+.+.+ |+++-..-|++.+..-++.
T Consensus 84 ~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccc
Confidence 888888888888864322 2345555655554333 33 78999999 77777777 8999999999999999988
Q ss_pred H--HHHHHHHHHHhhcC
Q 024174 246 E--EAKKWWEEFAETID 260 (271)
Q Consensus 246 ~--EA~k~we~f~~lv~ 260 (271)
+ ++-+..++..+.-+
T Consensus 161 ~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 161 NDAKELSFVDKVIDTDL 177 (306)
T ss_dssp TCHHHHHHHHHHHHHCT
T ss_pred ChHHHHHHHHHHHHhCC
Confidence 7 77777777665544
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=65.72 E-value=7.1 Score=29.67 Aligned_cols=74 Identities=11% Similarity=0.002 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHh----hCh-
Q 024174 172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTM----LNM- 245 (271)
Q Consensus 172 k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtm----L~k- 245 (271)
+.++|++.+++|.+ ....++. |+.++...+.+++|++ ++.-.+. .|......-|.+|.- ...
T Consensus 10 d~~~A~~~~~~aa~---~g~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACE---LNEMFGC-----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHH---TTCTTHH-----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHc---CCCHhhh-----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccH
Confidence 56788888888875 2333333 8888888888999998 5544433 456677778888876 455
Q ss_pred HHHHHHHHHHHh
Q 024174 246 EEAKKWWEEFAE 257 (271)
Q Consensus 246 ~EA~k~we~f~~ 257 (271)
++|.+||++=.+
T Consensus 78 ~~A~~~~~~Aa~ 89 (138)
T 1klx_A 78 RKAAQYYSKACG 89 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999987543
No 216
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=64.30 E-value=12 Score=38.34 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHHHHHhh---cC--CCcccchH-------HHHHH--HHHHhcchHHHhhhh-hhcccCCCCCCCCchhHH
Q 024174 172 KPEFAVTLLKKVYEDCK---NE--PEPAYNVE-------MALVE--ILIYQGKYREALECN-CLKDEQRIPSDGRFPFYK 236 (271)
Q Consensus 172 k~deave~Le~A~eka~---~e--~eeaynir-------mllvE--ilI~qGk~~EAL~~~-~L~~e~~~p~D~R~~L~k 236 (271)
++=+|+..|.++++... ++ ..+..+.+ ||.+| -|+-+|+|+-||+|. +=+.-- |+||+.-..=
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~L 377 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNL 377 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 44567778887775421 11 23333332 44444 566689999999966 555444 9999999999
Q ss_pred HHHHHhhCh-HHHHHH
Q 024174 237 AIIYTMLNM-EEAKKW 251 (271)
Q Consensus 237 ~IIYtmL~k-~EA~k~ 251 (271)
|-+|..|+. |.|=--
T Consensus 378 a~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 378 ARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHhccHHHHHHH
Confidence 999999999 988543
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=63.84 E-value=11 Score=27.43 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcchHHHhh-hhh---hcccCC--CCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 199 MALVEILIYQGKYREALE-CNC---LKDEQR--IPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 199 mllvEilI~qGk~~EAL~-~~~---L~~e~~--~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
..|++.++.+|+|+.|.. ++. +.+++. -+.....+.+-|..|--+|+ ++|....++-.++.|
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 468999999999999999 653 322221 01223446667888888999 999999999888877
No 218
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=62.50 E-value=25 Score=38.13 Aligned_cols=92 Identities=17% Similarity=0.093 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhc--CC-CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchh
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN--EP-EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPF 234 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~--e~-eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L 234 (271)
-+-.+...+-+.|+.++|.+++++.-+.-++ .| ---||+ |+.-++..|+++||++ +.++.+....| -..-
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNt---LI~Glck~G~~~eA~~Lf~eM~~~G~~P---DvvT 202 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA---VMLGWARQGAFKELVYVLFMVKDAGLTP---DLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHH---HHHHHHHHTCHHHHHHHHHHHHHTTCCC---CHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHH---HHHHHHhCCCHHHHHHHHHHHHHcCCCC---cHHH
Confidence 3667788899999999999999865433222 22 344553 5678899999999999 77888776434 3567
Q ss_pred HHHHHHHhhCh----HHHHHHHHHHH
Q 024174 235 YKAIIYTMLNM----EEAKKWWEEFA 256 (271)
Q Consensus 235 ~k~IIYtmL~k----~EA~k~we~f~ 256 (271)
|-++|..+-.. ++|.+.|++-.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 88899887643 56778877654
No 219
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.91 E-value=16 Score=34.25 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=53.2
Q ss_pred HhcCChhHHHHHHHHHHHHhhcCC-Cc--ccchHHHHHHHHHHhcchHHHhh-hhhhcc-----cCCCCCCCCchhHHHH
Q 024174 168 MKYGKPEFAVTLLKKVYEDCKNEP-EP--AYNVEMALVEILIYQGKYREALE-CNCLKD-----EQRIPSDGRFPFYKAI 238 (271)
Q Consensus 168 ~kSgk~deave~Le~A~eka~~e~-ee--aynirmllvEilI~qGk~~EAL~-~~~L~~-----e~~~p~D~R~~L~k~I 238 (271)
...++...|-..++++-.+...++ .+ --.+...++.++..+++|.+|.+ |.++.+ ++ +.+.+..|+.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d--~~~~~~~L~~~v 265 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD--EAKWKPVLSHIV 265 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC--HHHHHHHHHHHH
Confidence 345777778778887766655542 22 23466888999999999999999 545432 22 344566789999
Q ss_pred HHHhhCh
Q 024174 239 IYTMLNM 245 (271)
Q Consensus 239 IYtmL~k 245 (271)
+|.+|..
T Consensus 266 ~~~iLa~ 272 (445)
T 4b4t_P 266 YFLVLSP 272 (445)
T ss_dssp HHHHHSS
T ss_pred HHHHhCC
Confidence 9998863
No 220
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=58.37 E-value=25 Score=32.07 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh----hccc-CCCCCCC
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC----LKDE-QRIPSDG 230 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~----L~~e-~~~p~D~ 230 (271)
+..+...+......|++++|+..|+.+. ..+|-.+. +.-.++..|...|+..+|+. |+. |.+| ..-|...
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~---~~~P~~E~-~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALT---FEHPYREP-LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3456666777778899999999998775 35665544 55667778888999999999 774 4444 2237666
Q ss_pred CchhHHHHHH
Q 024174 231 RFPFYKAIIY 240 (271)
Q Consensus 231 R~~L~k~IIY 240 (271)
=.-||+.|.-
T Consensus 247 l~~l~~~il~ 256 (388)
T 2ff4_A 247 LRALNERILR 256 (388)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 5566666654
No 221
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=55.87 E-value=47 Score=33.12 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=52.5
Q ss_pred CChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHH--hhCh-H
Q 024174 171 GKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYT--MLNM-E 246 (271)
Q Consensus 171 gk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYt--mL~k-~ 246 (271)
++.+.|-++.+.+++++.+++ .+=+..+++++..|+.+.|.. ++..+... .+.+.+..||+..+-- -.|. +
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~----~~w~~y~~fe~~~~~~~~AR~lferal~~~-~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDG----EYINKYLDFLIYVNEESQVKSLFESSIDKI-SDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-SSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred CCHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCCHH
Confidence 446777777777777654332 233566777777788777777 65544333 0134566677665432 3345 7
Q ss_pred HHHHHHHHHHhhcCC
Q 024174 247 EAKKWWEEFAETIDD 261 (271)
Q Consensus 247 EA~k~we~f~~lv~~ 261 (271)
.+.+.-++..+++|+
T Consensus 559 ~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 559 SVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 777777888887775
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=54.93 E-value=31 Score=32.55 Aligned_cols=58 Identities=17% Similarity=0.029 Sum_probs=44.0
Q ss_pred HHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHHHHHhhcC
Q 024174 200 ALVEILIYQGKYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWEEFAETID 260 (271)
Q Consensus 200 llvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we~f~~lv~ 260 (271)
+++-++.++|++++|.. .+.-..-+ | +.=-|...|.+|.+.|. +||..++++=.++-|
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln--~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLE--M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45556778999999999 66544334 4 34455688999999999 999999988777766
No 223
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=52.54 E-value=67 Score=29.64 Aligned_cols=100 Identities=7% Similarity=-0.036 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhc-chHHHhh-hhhhcccCCCCCCCC
Q 024174 155 EDVNAIKAEAVKQMKYGKP-EFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQG-KYREALE-CNCLKDEQRIPSDGR 231 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~-deave~Le~A~eka~~e~eeaynirmllvEilI~qG-k~~EAL~-~~~L~~e~~~p~D~R 231 (271)
+++..+.+..-.++++++. ++|++..+++++..-+ .-.+-+.|=.+. ...| .+++++. ++.+...+ |+..-
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL---~~l~~~l~eEL~~~~~~L~~n--PKny~ 124 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLL---TSLNKSLEDELRLMNEFAVQN--LKSYQ 124 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHTT--CCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHhC--CCcHH
Confidence 3455566666666666655 4788888888754322 234444443333 3346 5999999 66777777 88888
Q ss_pred chhHHHHHHHhh-C-h-HHHHHHHHHHHhhcC
Q 024174 232 FPFYKAIIYTML-N-M-EEAKKWWEEFAETID 260 (271)
Q Consensus 232 ~~L~k~IIYtmL-~-k-~EA~k~we~f~~lv~ 260 (271)
..-+++.+..-+ + . +++-+..++--+.-|
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp 156 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP 156 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence 888888888777 6 5 777777766655444
No 224
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=51.08 E-value=49 Score=37.15 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc--------------C-----------CCcccchHHHHHHHHHHhc
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKN--------------E-----------PEPAYNVEMALVEILIYQG 209 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~--------------e-----------~eeaynirmllvEilI~qG 209 (271)
++.++....+.-+++.|++++|+++|+.|.+.-++ + +.. .++. -+++.+.-+|
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~-~iGd~le~eg 1209 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQ-QVGDRCYDEK 1209 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHH-HHHHHHHhcC
Confidence 34556778899999999999999999876644311 0 111 1222 3677777788
Q ss_pred chHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-HHHHHHHH
Q 024174 210 KYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-EEAKKWWE 253 (271)
Q Consensus 210 k~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~EA~k~we 253 (271)
+|++|.. |+.- --|.-.|..|--|++ ++|-+.+.
T Consensus 1210 ~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888 4432 146667777777787 77776653
No 225
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=51.07 E-value=23 Score=25.96 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=12.2
Q ss_pred CCCcccchHHHHHHHHHHhcchHHHh
Q 024174 190 EPEPAYNVEMALVEILIYQGKYREAL 215 (271)
Q Consensus 190 e~eeaynirmllvEilI~qGk~~EAL 215 (271)
++..+--|.|.-+-=|+.||+|++||
T Consensus 35 ~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 35 EECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp SSTTHHHHHHHHHHHHHHC-------
T ss_pred CCCHHHHHHHHHHHHHHccchHhHhh
Confidence 34444556666666788999999998
No 226
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=46.29 E-value=79 Score=28.80 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=21.0
Q ss_pred hHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh--HHHHHHHHHHHhh
Q 024174 211 YREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM--EEAKKWWEEFAET 258 (271)
Q Consensus 211 ~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k--~EA~k~we~f~~l 258 (271)
|++++. |..+.+.+ |+++-..-|++.+..-++. +++-++.++..+.
T Consensus 126 ~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 126 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 444444 33444444 4444445555555444444 4444444444433
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=44.38 E-value=40 Score=28.15 Aligned_cols=84 Identities=17% Similarity=0.104 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH---hcchHHHhh-hhhhcccCCCCCCCCchhHH-HHHHHhhCh-HH
Q 024174 174 EFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY---QGKYREALE-CNCLKDEQRIPSDGRFPFYK-AIIYTMLNM-EE 247 (271)
Q Consensus 174 deave~Le~A~eka~~e~eeaynirmllvEilI~---qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k-~IIYtmL~k-~E 247 (271)
.+-++.|++.|+.-.. ...-.+.+.-+|=-||. ..+-++|.. .++|.+++ |.+-|=+||. |+=|.=|++ ++
T Consensus 19 ~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~ 95 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp HHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHH
Confidence 4566788888875422 24555556666666666 466778988 77888887 7888888876 677888999 99
Q ss_pred HHHHHHHHHhhcC
Q 024174 248 AKKWWEEFAETID 260 (271)
Q Consensus 248 A~k~we~f~~lv~ 260 (271)
|.++=+.+-+.-|
T Consensus 96 Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 96 AKRYVDTLFEHER 108 (144)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999888776
No 228
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=40.92 E-value=32 Score=28.02 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHhcchHHHhh
Q 024174 196 NVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~ 216 (271)
-|.|.=.-=|+.||+|++|+.
T Consensus 40 ~v~lIR~sSLmNrG~Yq~Al~ 60 (115)
T 2uwj_G 40 AARLIRISSLANQGRYQEALA 60 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHG
T ss_pred HHHHHHHHHHHcchhHHHHHH
Confidence 344444456888999999996
No 229
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=40.59 E-value=32 Score=28.09 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHhcchHHHhh
Q 024174 196 NVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~ 216 (271)
-|.|.=.-=|+.||+|++|+.
T Consensus 41 ~v~lIR~sSLmNrG~Yq~Al~ 61 (116)
T 2p58_C 41 AVQLIRLSSLMNRGDYASALQ 61 (116)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcchhHHHHHH
Confidence 344444455888999999997
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=39.85 E-value=47 Score=28.26 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=40.3
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhcC-----CCcccchHHHHHHHHHHhcchHHHhh-hhh
Q 024174 166 KQMKYGKPEFAVTLLKKVYEDCKNE-----PEPAYNVEMALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 166 ~L~kSgk~deave~Le~A~eka~~e-----~eeaynirmllvEilI~qGk~~EAL~-~~~ 219 (271)
.|-..+-++.|.-....+.-...++ |+..|++-..+++.+.-+|+|..|++ |++
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4455667777766666655444443 35788999999999999999999999 765
No 231
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=39.43 E-value=86 Score=28.32 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=48.3
Q ss_pred HHHHHHHHHHH-HhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh---hhhhccc-----CCCC
Q 024174 157 VNAIKAEAVKQ-MKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE---CNCLKDE-----QRIP 227 (271)
Q Consensus 157 v~~lk~~A~~L-~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~---~~~L~~e-----~~~p 227 (271)
.+.||-.|+-. ++.|+.++|.++|+.-+. +....+.+|+-|.-|-=-+--|..=++ |.++.+. +...
T Consensus 113 ~~llk~qAV~VCiek~~f~kA~eiLkr~~~----~~~s~~kLr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki~~fve~~~ 188 (235)
T 3bu8_A 113 RKLVKEAAVIICIKNKEFEKASKILKKHMS----KDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLRFLESHL 188 (235)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHST----TCGGGHHHHHHHHHHHHHTCTTSHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHhc----CCCCchHHHHHHHHHHhccCcccHHHHhccHHHHHHHHHHHHHHHh
Confidence 34455555555 889999999999997774 566677799888765433444555554 3333322 1234
Q ss_pred CCCCchhHHHH
Q 024174 228 SDGRFPFYKAI 238 (271)
Q Consensus 228 ~D~R~~L~k~I 238 (271)
.+.=++|-++-
T Consensus 189 ~~a~~FLL~~A 199 (235)
T 3bu8_A 189 DDAEPYLLTMA 199 (235)
T ss_dssp CCCCCHHHHHH
T ss_pred cccchHHHHHH
Confidence 55666777664
No 232
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=39.04 E-value=93 Score=25.12 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=44.8
Q ss_pred cCcchhhhhhhhhhhhhhhcCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC
Q 024174 117 IGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE 190 (271)
Q Consensus 117 ~gg~~Al~slld~~~~la~t~~~~~~~~~~~~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e 190 (271)
+.|...|..+=++...=..+ ..+|.++||+.|..-...|-..++.+.|...|+-..-..++.
T Consensus 32 f~g~t~l~evK~lL~~Wv~s------------~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~rlv~~~ 93 (124)
T 3vu7_H 32 LAGAVEFNDVKTLLREWITT------------ISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQS 93 (124)
T ss_dssp CSSSCSHHHHHHHHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCcCHHHHHHHHHHHHHc------------CCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhcc
Confidence 56777776666666553222 146899999999999999998999999988888655444443
No 233
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=38.70 E-value=1e+02 Score=23.46 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=44.6
Q ss_pred cCcchhhhhhhhhhhhhhhcCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhcC
Q 024174 117 IGGRYALNSFLDVSVRLASSKAEPFYWPRYTVPPGPSAEDVNAIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNE 190 (271)
Q Consensus 117 ~gg~~Al~slld~~~~la~t~~~~~~~~~~~~~~~Ps~e~v~~lk~~A~~L~kSgk~deave~Le~A~eka~~e 190 (271)
++|...|..+=++...=..+ ..+|..+||+.|..-..+|-..++.+.|...|+--.-..++.
T Consensus 5 ~~g~t~l~dvr~~l~~Wv~~------------~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l~rlv~~~ 66 (97)
T 4fjo_A 5 LAGAVEFSDVKTLLKEWITT------------ISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQQS 66 (97)
T ss_dssp BTTBCSHHHHHHHHHHHHHH------------CSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCcCHHHHHHHHHHHHHc------------CCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcc
Confidence 56777776666666553222 146899999999999999998899999988887554444433
No 234
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=37.61 E-value=54 Score=29.88 Aligned_cols=83 Identities=12% Similarity=-0.030 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcc-hHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhh------
Q 024174 172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGK-YREALE-CNCLKDEQRIPSDGRFPFYKAIIYTML------ 243 (271)
Q Consensus 172 k~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk-~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL------ 243 (271)
..+++++.++++++.-.++-+.=.+-+.++.+ -|+ +++++. +..+.+.+ |+|.-..-|++.+..-+
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC--
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcccc
Confidence 47889999988887443333333333333332 366 699999 56888888 99999999999988877
Q ss_pred --------Ch-HHHHHHHHHHHhhcC
Q 024174 244 --------NM-EEAKKWWEEFAETID 260 (271)
Q Consensus 244 --------~k-~EA~k~we~f~~lv~ 260 (271)
+. +|+-++.++-..+-|
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHST
T ss_pred ccccccchHHHHHHHHHHHHHHHhCC
Confidence 44 788888888887777
No 235
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=36.98 E-value=1.3e+02 Score=29.99 Aligned_cols=97 Identities=9% Similarity=-0.081 Sum_probs=62.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhh-------c-CCC----------cccchHHHHHHHHHHhcchHHHhh-hhh-hc
Q 024174 162 AEAVKQMKYGKPEFAVTLLKKVYEDCK-------N-EPE----------PAYNVEMALVEILIYQGKYREALE-CNC-LK 221 (271)
Q Consensus 162 ~~A~~L~kSgk~deave~Le~A~eka~-------~-e~e----------eaynirmllvEilI~qGk~~EAL~-~~~-L~ 221 (271)
..|......|+.+.|-++++++++... + .|+ ..-.+=+..++...-.|+.++|.+ +.. +.
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566677889999999988887531 1 132 122355666677667788888888 553 33
Q ss_pred ccCCCCCCCCchhHHHHHHHhhCh--HHHHHHHHHHHhhcC
Q 024174 222 DEQRIPSDGRFPFYKAIIYTMLNM--EEAKKWWEEFAETID 260 (271)
Q Consensus 222 ~e~~~p~D~R~~L~k~IIYtmL~k--~EA~k~we~f~~lv~ 260 (271)
... +...+.|+..|.+---+++ +.|.+.||.-.+..|
T Consensus 463 ~~~--~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 463 LKK--LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp TGG--GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred hcC--CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 212 2344556655655544444 899999998888877
No 236
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=36.23 E-value=49 Score=23.86 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=27.6
Q ss_pred HHHhh-hhhhcccCCCCCCCCch-hHHHH-H----HHhhC-h-HHHHHHHHHHHh
Q 024174 212 REALE-CNCLKDEQRIPSDGRFP-FYKAI-I----YTMLN-M-EEAKKWWEEFAE 257 (271)
Q Consensus 212 ~EAL~-~~~L~~e~~~p~D~R~~-L~k~I-I----YtmL~-k-~EA~k~we~f~~ 257 (271)
+||-. +-+|.+++-+++|-=.- ..+.| | |..|+ + .|-++.||+|..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 45555 44555555445553221 22333 2 77788 6 999999999975
No 237
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=34.57 E-value=84 Score=35.40 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALV 202 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllv 202 (271)
.+--.+...+..|.+++|.++||++.- ..++=.+..+++-+|+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi 1029 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLI 1029 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHH
Confidence 455667777899999999999998872 1111124555555544
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=34.51 E-value=71 Score=32.76 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~ 216 (271)
|.--|.-|.+.|+++-|++.-+.|.+.+ |.| ..-=-.||+++|..|+|+.||-
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a---Pse-F~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELA---LDS-FESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC---chh-hHHHHHHHHHHHHhccHHHHHH
Confidence 4444566777899999988888887655 222 2223678999999999999997
No 239
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=34.47 E-value=62 Score=29.88 Aligned_cols=84 Identities=11% Similarity=0.120 Sum_probs=61.1
Q ss_pred ChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhc-chHHHhh-hhhhcccCCCCCCCCchhHHHHHHHhhCh-H--
Q 024174 172 KPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQG-KYREALE-CNCLKDEQRIPSDGRFPFYKAIIYTMLNM-E-- 246 (271)
Q Consensus 172 k~deave~Le~A~eka~~e~eeaynirmllvEilI~qG-k~~EAL~-~~~L~~e~~~p~D~R~~L~k~IIYtmL~k-~-- 246 (271)
..+++++.++.+++..-+ .-.+.+-|-.+.+-+ .| ++++++. |+.+.+.+ |+++-..-|++.+..-++. +
T Consensus 104 ~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l--~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI--SPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp CHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH--CCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccccc
Confidence 488899999888842211 235566666665543 25 8999999 77888777 9999999999999998888 7
Q ss_pred ------HHHHHHHHHHhhcC
Q 024174 247 ------EAKKWWEEFAETID 260 (271)
Q Consensus 247 ------EA~k~we~f~~lv~ 260 (271)
++-++.++..+.-|
T Consensus 179 ~~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT
T ss_pred chhhHHHHHHHHHHHHHhCC
Confidence 66666666665544
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=33.95 E-value=55 Score=27.00 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHH---hcchHHHhh-hhhhcccCCCCCCCCchhHH-HHHHHhhCh-HH
Q 024174 174 EFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIY---QGKYREALE-CNCLKDEQRIPSDGRFPFYK-AIIYTMLNM-EE 247 (271)
Q Consensus 174 deave~Le~A~eka~~e~eeaynirmllvEilI~---qGk~~EAL~-~~~L~~e~~~p~D~R~~L~k-~IIYtmL~k-~E 247 (271)
.+-++.|++.|+.-. .++.--+.+.-+|=-||. ..+..+|.. .++|.+++ |.+-|=+||- ||=|.=|+. ++
T Consensus 20 ~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~ 96 (134)
T 3o48_A 20 PQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSM 96 (134)
T ss_dssp HHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHH
Confidence 456778888887642 233333444444444554 356788998 78888887 7777777765 777888999 99
Q ss_pred HHHHHHHHHhhcC
Q 024174 248 AKKWWEEFAETID 260 (271)
Q Consensus 248 A~k~we~f~~lv~ 260 (271)
|.++=+..-+.-|
T Consensus 97 Ar~y~d~lL~~eP 109 (134)
T 3o48_A 97 AKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHTTCT
T ss_pred HHHHHHHHHhhCC
Confidence 9999998887766
No 241
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.64 E-value=44 Score=26.52 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhc---CC-----CcccchHH--HHHHHHHHhcchHHHhhhhhhccc
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKN---EP-----EPAYNVEM--ALVEILIYQGKYREALECNCLKDE 223 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~---e~-----eeaynirm--llvEilI~qGk~~EAL~~~~L~~e 223 (271)
--..|..+.+.|++|+|.+..++|.....+ -. .+-=+++- .|=|+.++|.+|..|-.-+.|.-+
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SLqLQrd~HlKQ~~liq~r~k~~~~ee~l~~~ 91 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQERWKRAKREERLKAH 91 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 345689999999999997766666443322 11 11112222 266778888888777644455433
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=32.03 E-value=97 Score=28.99 Aligned_cols=60 Identities=15% Similarity=-0.003 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHH----------------HHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhh
Q 024174 158 NAIKAEAVKQMKYGKPEFAVTL----------------LKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNC 219 (271)
Q Consensus 158 ~~lk~~A~~L~kSgk~deave~----------------Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~ 219 (271)
+.++..+..|.+.|..++|++. ++.|++.|+.-.+ ...--.++++.+.+|+++.|.+ |..
T Consensus 630 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~--~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 630 DSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESA--EMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCc--HhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3457777888888988887653 4455565544222 1233468999999999999998 444
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=31.92 E-value=2.3e+02 Score=26.53 Aligned_cols=87 Identities=22% Similarity=0.219 Sum_probs=61.5
Q ss_pred CChhHHHHHHHHHHHHhhcCCCc--ccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCCc-----hhHHHHHHHh
Q 024174 171 GKPEFAVTLLKKVYEDCKNEPEP--AYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGRF-----PFYKAIIYTM 242 (271)
Q Consensus 171 gk~deave~Le~A~eka~~e~ee--aynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R~-----~L~k~IIYtm 242 (271)
+..+..+++..++++-|++|.-- -.+++.=++.++.-+|+|.+|++ ++.|.++=. .-|-.. ||...=+|+-
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~ 151 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHA 151 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHH
Confidence 55677888889999888866322 23456688999999999999999 777776621 123333 5666667888
Q ss_pred hCh-HHHHHHHHHHHhh
Q 024174 243 LNM-EEAKKWWEEFAET 258 (271)
Q Consensus 243 L~k-~EA~k~we~f~~l 258 (271)
++. .+++....+=+++
T Consensus 152 ~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 152 LSNLPKARAALTSARTT 168 (394)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhh
Confidence 888 8888777655443
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=30.81 E-value=68 Score=25.88 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHh---cchHHHhh-hhhhcccCCCCCCCCchhHH-HHHHHhhCh-HHH
Q 024174 175 FAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQ---GKYREALE-CNCLKDEQRIPSDGRFPFYK-AIIYTMLNM-EEA 248 (271)
Q Consensus 175 eave~Le~A~eka~~e~eeaynirmllvEilI~q---Gk~~EAL~-~~~L~~e~~~p~D~R~~L~k-~IIYtmL~k-~EA 248 (271)
+.+..++++|.........-.+.++-+|=-||.- .+-++|.. .++|.+++- |.+-|=+||- ||=|.=|+. ++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445566666655442334455556666666664 44556888 778887751 3356666665 677888888 999
Q ss_pred HHHHHHHHhhcC
Q 024174 249 KKWWEEFAETID 260 (271)
Q Consensus 249 ~k~we~f~~lv~ 260 (271)
.++.+.+-+.-|
T Consensus 94 ~~~~~~lL~~eP 105 (126)
T 1nzn_A 94 LKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 999999988877
No 245
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.53 E-value=55 Score=30.58 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
...+++.+++++|+|++|.+ ++++.+
T Consensus 199 A~allarvyL~~~~~~~A~~~a~~vi~ 225 (478)
T 3hdx_A 199 AYSVLAHICAWQGNYAEAETYSAFIID 225 (478)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77899999999999999999 666654
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.06 E-value=58 Score=30.11 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHhhcC--C-CcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCCCCC--chhHHHHHHHhhCh-H
Q 024174 174 EFAVTLLKKVYEDCKNE--P-EPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPSDGR--FPFYKAIIYTMLNM-E 246 (271)
Q Consensus 174 deave~Le~A~eka~~e--~-eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~D~R--~~L~k~IIYtmL~k-~ 246 (271)
++-++.|+...+.++++ + .+-+...+-+++++.-.|++++|++ |.++.+.-. -.+-+ .+|.+.=++...+. .
T Consensus 107 ~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-~~~~kid~~l~~irl~l~~~d~~ 185 (429)
T 4b4t_R 107 ESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-STGAKIDVMLTIARLGFFYNDQL 185 (429)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-CCCSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhccHH
Confidence 44567777777777654 3 4577888999999999999999999 777766531 12333 34444445666666 8
Q ss_pred HHHHHHHHHHhhcCC
Q 024174 247 EAKKWWEEFAETIDD 261 (271)
Q Consensus 247 EA~k~we~f~~lv~~ 261 (271)
.|+.+-++=+.+..+
T Consensus 186 ~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 186 YVKEKLEAVNSMIEK 200 (429)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhc
Confidence 888887777766653
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.07 E-value=1.3e+02 Score=27.56 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHH-hhc-CCCcccchHHHHHHHHHHhc
Q 024174 155 EDVNAIKAEAVKQMKYGKPEFAVTLLKKVYED-CKN-EPEPAYNVEMALVEILIYQG 209 (271)
Q Consensus 155 e~v~~lk~~A~~L~kSgk~deave~Le~A~ek-a~~-e~eeaynirmllvEilI~qG 209 (271)
|-+-.++..+.|..+++++++|+++|...-.. .++ +...+-++-++++|++-..+
T Consensus 31 EAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~ 87 (312)
T 2wpv_A 31 EAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE 87 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 33556888888999999999999988776554 333 34677778888888876643
No 248
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.41 E-value=2e+02 Score=26.35 Aligned_cols=49 Identities=4% Similarity=0.064 Sum_probs=36.8
Q ss_pred HhcCChhHHHHHHHHHHHHhhcC-------------CCcccchHHHHHHHHHHhcchHHHhh
Q 024174 168 MKYGKPEFAVTLLKKVYEDCKNE-------------PEPAYNVEMALVEILIYQGKYREALE 216 (271)
Q Consensus 168 ~kSgk~deave~Le~A~eka~~e-------------~eeaynirmllvEilI~qGk~~EAL~ 216 (271)
....+.+++++.|++..++..+. .+..-.+++.++.+++..|++++|-+
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~ 148 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARD 148 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44578899999999875554320 13445788999999999999999987
No 249
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=22.11 E-value=1.2e+02 Score=29.19 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHhcchHHHhh-hhhhcccCCCCC----CCCchh
Q 024174 160 IKAEAVKQMKYGKPEFAVTLLKKVYEDCKNEPEPAYNVEMALVEILIYQGKYREALE-CNCLKDEQRIPS----DGRFPF 234 (271)
Q Consensus 160 lk~~A~~L~kSgk~deave~Le~A~eka~~e~eeaynirmllvEilI~qGk~~EAL~-~~~L~~e~~~p~----D~R~~L 234 (271)
+-.++....+.|..++|.++|+.++..- .-+..=-.+|.+.--....|++.|+++ |+.-. |. |+ =-..+|
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni-~k~~~~~~~~~~ 284 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NI-PKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CH-HHHHHHHHTTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cC-cHHHHHHHHHHH
Confidence 4467777899999999999999998422 234444455666666667899999999 66322 21 11 023678
Q ss_pred HHHHHHHhh--Ch-HHHHH
Q 024174 235 YKAIIYTML--NM-EEAKK 250 (271)
Q Consensus 235 ~k~IIYtmL--~k-~EA~k 250 (271)
|+..+|... ++ |.|-.
T Consensus 285 w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHH
Confidence 888888876 44 55543
No 250
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=22.07 E-value=2.2e+02 Score=27.38 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 024174 159 AIKAEAVKQMKYGKPEFAVTLLK 181 (271)
Q Consensus 159 ~lk~~A~~L~kSgk~deave~Le 181 (271)
++......+...|++++|.....
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -------------CTTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555555555555544443
No 251
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.96 E-value=98 Score=28.31 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=43.1
Q ss_pred CcccchHHHHHHHHHHhcc---hHHHhh-hhhhcccC---CCCCCCCchhHHHHHHHhhChHHHHHHHHHHHhhc
Q 024174 192 EPAYNVEMALVEILIYQGK---YREALE-CNCLKDEQ---RIPSDGRFPFYKAIIYTMLNMEEAKKWWEEFAETI 259 (271)
Q Consensus 192 eeaynirmllvEilI~qGk---~~EAL~-~~~L~~e~---~~p~D~R~~L~k~IIYtmL~k~EA~k~we~f~~lv 259 (271)
.....+|..+....+.-|. .++|.+ +++..+.+ .+|.|.|...|...+- ..++-+..|++|++.-
T Consensus 194 ~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~---~~~~~~~l~~~y~~s~ 265 (419)
T 3rjo_A 194 VSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQ---STEGWDFLYSKYQFSL 265 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTT---SHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeC---CHHHHHHHHHHHhcCC
Confidence 3456788888888888765 556666 55544332 3577877766655432 2478899999998763
No 252
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.21 E-value=90 Score=29.42 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 197 VEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 197 irmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
+..+++.+++++|+|++|.. ++++.+
T Consensus 205 A~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 205 VLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77899999999999999999 555543
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=21.18 E-value=1.3e+02 Score=28.02 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH-hhc-CCCcccchHHHHHHHHHHhc
Q 024174 157 VNAIKAEAVKQMKYGKPEFAVTLLKKVYED-CKN-EPEPAYNVEMALVEILIYQG 209 (271)
Q Consensus 157 v~~lk~~A~~L~kSgk~deave~Le~A~ek-a~~-e~eeaynirmllvEilI~qG 209 (271)
+-.++..+.|..+++++++|+++|-..-.. .++ +...+-++-++|+|++--.|
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 556888899999999999999988765433 333 35677788888888876643
No 254
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=20.16 E-value=1.2e+02 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHhcchHHHhh-hhhhcc
Q 024174 196 NVEMALVEILIYQGKYREALE-CNCLKD 222 (271)
Q Consensus 196 nirmllvEilI~qGk~~EAL~-~~~L~~ 222 (271)
-...+++.+++++|+|++|.+ ++++.+
T Consensus 203 aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 368899999999999999999 666654
Done!