Query 024175
Match_columns 271
No_of_seqs 176 out of 1000
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 9.8E-48 2.1E-52 358.4 10.7 169 103-271 239-408 (408)
2 PF03547 Mem_trans: Membrane t 99.9 4.3E-27 9.2E-32 222.5 15.8 157 96-263 228-385 (385)
3 TIGR00946 2a69 he Auxin Efflux 99.9 3.2E-21 7E-26 179.6 18.2 146 103-266 173-320 (321)
4 PRK09903 putative transporter 99.9 1.4E-20 2.9E-25 175.3 17.2 140 108-266 170-310 (314)
5 COG0679 Predicted permeases [G 99.8 3.9E-18 8.4E-23 159.1 18.0 144 108-268 165-309 (311)
6 TIGR00841 bass bile acid trans 98.9 5.9E-09 1.3E-13 96.5 10.5 109 155-269 14-123 (286)
7 PF01758 SBF: Sodium Bile acid 98.4 5.7E-06 1.2E-10 71.7 11.8 109 155-268 4-113 (187)
8 TIGR00832 acr3 arsenical-resis 98.3 2.4E-05 5.2E-10 74.0 15.6 141 112-268 11-158 (328)
9 COG0385 Predicted Na+-dependen 98.1 6.4E-05 1.4E-09 70.9 12.8 110 153-268 42-152 (319)
10 PF13593 DUF4137: SBF-like CPA 97.7 0.00027 5.9E-09 66.5 10.9 144 112-267 2-147 (313)
11 COG0798 ACR3 Arsenite efflux p 96.4 0.16 3.4E-06 48.5 15.5 139 113-269 20-167 (342)
12 KOG2718 Na+-bile acid cotransp 86.4 0.77 1.7E-05 44.5 3.7 106 156-267 120-227 (371)
13 PF04172 LrgB: LrgB-like famil 83.1 33 0.00071 30.9 12.4 136 109-263 19-155 (215)
14 PRK10711 hypothetical protein; 80.7 45 0.00097 30.4 12.8 136 109-263 30-166 (231)
15 COG2855 Predicted membrane pro 76.8 25 0.00055 33.7 10.0 138 111-268 38-177 (334)
16 COG1346 LrgB Putative effector 74.9 59 0.0013 29.6 11.4 138 109-265 32-170 (230)
17 PRK03562 glutathione-regulated 72.0 1.1E+02 0.0023 31.6 14.1 120 141-266 260-379 (621)
18 KOG1397 Ca2+/H+ antiporter VCX 68.4 35 0.00076 33.6 8.9 162 92-257 53-241 (441)
19 PRK03659 glutathione-regulated 65.7 1.7E+02 0.0036 30.1 14.3 120 141-266 257-376 (601)
20 TIGR00659 conserved hypothetic 64.7 1.1E+02 0.0024 27.8 13.0 135 109-262 29-164 (226)
21 COG3329 Predicted permease [Ge 63.9 18 0.00039 34.6 5.9 60 102-169 207-267 (372)
22 PRK04288 antiholin-like protei 63.8 1.2E+02 0.0026 27.7 14.4 135 109-262 35-170 (232)
23 PF03601 Cons_hypoth698: Conse 59.9 1.4E+02 0.0031 28.1 11.3 135 109-263 25-166 (305)
24 KOG4821 Predicted Na+-dependen 57.0 39 0.00085 30.9 6.6 83 175-263 81-164 (287)
25 PRK03562 glutathione-regulated 54.7 2.2E+02 0.0048 29.3 12.6 56 103-168 21-77 (621)
26 COG3180 AbrB Putative ammonia 44.1 2.8E+02 0.0062 26.9 10.6 48 193-246 99-147 (352)
27 PF09925 DUF2157: Predicted me 43.8 1.8E+02 0.0039 23.8 8.7 42 211-252 87-128 (145)
28 TIGR03082 Gneg_AbrB_dup membra 35.3 2.6E+02 0.0057 23.3 10.7 46 219-264 108-154 (156)
29 PF03812 KdgT: 2-keto-3-deoxyg 33.7 2.7E+02 0.0059 26.6 8.6 83 156-245 52-141 (314)
30 PRK03659 glutathione-regulated 29.4 6.4E+02 0.014 25.9 13.6 117 104-237 22-139 (601)
31 PRK12460 2-keto-3-deoxyglucona 27.2 2.5E+02 0.0054 26.8 7.2 79 157-243 53-134 (312)
32 PF03222 Trp_Tyr_perm: Tryptop 24.6 5.8E+02 0.013 24.6 9.5 46 222-267 188-240 (394)
33 PRK12585 putative monovalent c 20.9 6E+02 0.013 22.7 8.8 27 181-207 71-97 (197)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.8e-48 Score=358.45 Aligned_cols=169 Identities=54% Similarity=1.038 Sum_probs=165.0
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHH
Q 024175 103 HQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIA 182 (271)
Q Consensus 103 ~~~lk~l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~ 182 (271)
+..+|++++|+++|+++|+++|++||+|+++|++++|+++++|+++++|++++|++++++|+||.++++++..+.+.+++
T Consensus 239 ~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iig 318 (408)
T KOG2722|consen 239 KVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIG 318 (408)
T ss_pred HhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEE
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC-CChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHH
Q 024175 183 VVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTG 261 (271)
Q Consensus 183 iv~vRlillPli~~~iv~~~~~~g~l~-~dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlpl 261 (271)
+++.||+++|+++++++..++|+|+++ +||+|++|+++|+++|||+|.+.+||++|.+|+|||.+++|+|+++.+++++
T Consensus 319 iii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltv 398 (408)
T KOG2722|consen 319 IIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTV 398 (408)
T ss_pred EEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 024175 262 WSMVYMWILS 271 (271)
Q Consensus 262 w~~lf~~l~~ 271 (271)
|.++|+|++.
T Consensus 399 w~~~f~~lv~ 408 (408)
T KOG2722|consen 399 WSVFFLWLVV 408 (408)
T ss_pred HHHHHHHHhC
Confidence 9999999973
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.95 E-value=4.3e-27 Score=222.48 Aligned_cols=157 Identities=32% Similarity=0.489 Sum_probs=137.0
Q ss_pred hhhHHHHHHH-HHHhcChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCC
Q 024175 96 KRSLEFLHQL-LEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSST 174 (271)
Q Consensus 96 ~~~~~~~~~~-lk~l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~ 174 (271)
++.++...+. +|.++||+++|.++|++++++|+.+++++. .++.++++++|++++|++|+++|++|++.+++..
T Consensus 228 ~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~ 302 (385)
T PF03547_consen 228 NSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRKSA 302 (385)
T ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccc
Confidence 3444443334 566899999999999999999987765444 7999999999999999999999999998766666
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHH
Q 024175 175 LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLV 254 (271)
Q Consensus 175 ~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syll 254 (271)
.+.+.....+++|++++|++++++++++ ..|+....++++++|+|+|++..++|++||.+++++|..++|+|++
T Consensus 303 ~~~~~~~~~~~~rlii~P~i~~~~~~~~------~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~ 376 (385)
T PF03547_consen 303 LGWKPSIIAVLVRLIILPLIGIGIVFLL------GLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLL 376 (385)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7777777789999999999999998754 2467788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 024175 255 AALALTGWS 263 (271)
Q Consensus 255 Sivtlplw~ 263 (271)
+++++|+|+
T Consensus 377 ~~~~~~~~~ 385 (385)
T PF03547_consen 377 SIPTLPLWI 385 (385)
T ss_pred HHHHHHHHC
Confidence 999999995
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.87 E-value=3.2e-21 Score=179.63 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=127.7
Q ss_pred HHHHHH-hcChhHHHHHHHHHHHhhhhhhHhhhcCCCch-hhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHH
Q 024175 103 HQLLEE-LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLII 180 (271)
Q Consensus 103 ~~~lk~-l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL-~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i 180 (271)
++.+|+ ++||+++|.++|+++..+++ ++ .++.++++++|++++|++|+++|+.+... +.+.+.+..
T Consensus 173 ~~~~~~~~~nP~iia~i~Gl~~~~~~i----------~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~--~~~~~~~~~ 240 (321)
T TIGR00946 173 IFVWKKLIKFPPLWAPLLSVILSLVGF----------KMPGLILKSISILSGATTPMALFSLGLALSPR--KIKLGVRDA 240 (321)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhh----------cCcHHHHHHHHHHHHHHHHHHHHHHHHhhChh--hhccChHHH
Confidence 344555 57999999999999999983 33 79999999999999999999999999753 233445778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHH
Q 024175 181 IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 260 (271)
Q Consensus 181 ~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlp 260 (271)
...+++|+++.|++++++.+. ++.|+....++++++|||+|.+..++|++||.|++++|+.+++||++|++|+|
T Consensus 241 ~~~~~~klil~P~i~~~~~~~------~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 241 ILALIVRFLVQPAVMAGISKL------IGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999887764 34578889999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 024175 261 GWSMVY 266 (271)
Q Consensus 261 lw~~lf 266 (271)
+|+.++
T Consensus 315 ~~~~l~ 320 (321)
T TIGR00946 315 LFIILL 320 (321)
T ss_pred HHHHHh
Confidence 999864
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.86 E-value=1.4e-20 Score=175.35 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=122.9
Q ss_pred HhcChhHHHHHHHHHHHhhhhhhHhhhcCCCch-hhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHH
Q 024175 108 ELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCV 186 (271)
Q Consensus 108 ~l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL-~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~v 186 (271)
.++||+++|.++|+++..++ .++ .++.++++++|++++|++|+.+|++|++...+ . .+..+...+.
T Consensus 170 ~~~nP~iia~~~gl~~~l~~----------i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~-~~~~~~~~~~ 236 (314)
T PRK09903 170 AAKEPVVWAPVLATILVLVG----------VKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--F-SAEIAYNTFL 236 (314)
T ss_pred HHhchHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--c-cHHHHHHHHH
Confidence 46899999999999998876 344 89999999999999999999999999975322 2 2456788899
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 187 RYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVY 266 (271)
Q Consensus 187 RlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf 266 (271)
|+++.|++.+.+... .+.|+....++++++|||+|++..++|++||.|++.++..++.||++|++|+|+|++++
T Consensus 237 Kli~~P~i~~~~~~~------~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 237 KLILMPLALLLVGMA------CHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHHHHH------cCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876653 34578889999999999999999999999999999999999999999999999999974
No 5
>COG0679 Predicted permeases [General function prediction only]
Probab=99.79 E-value=3.9e-18 Score=159.14 Aligned_cols=144 Identities=21% Similarity=0.326 Sum_probs=126.3
Q ss_pred HhcChhHHHHHHHHHHHhhhhhhHhhhcCCCch-hhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHH
Q 024175 108 ELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCV 186 (271)
Q Consensus 108 ~l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL-~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~v 186 (271)
-++||+++|.++|+++...++ ++ .++.++++++|++++|++|+++|.+|+. .+.++.+.+.++.....
T Consensus 165 ~~~nP~i~a~i~g~~~~~~~i----------~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~ 233 (311)
T COG0679 165 LLTNPLIIALILGLLLNLLGI----------SLPAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILIALSL 233 (311)
T ss_pred HHhCcHHHHHHHHHHHHHcCC----------CCcHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHHHHHH
Confidence 368999999999999998873 33 7999999999999999999999999998 23455556677777778
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 187 RYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVY 266 (271)
Q Consensus 187 RlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf 266 (271)
|+++.|++.+.+.++ ++.++....+++++.|+|+|+|..++|++||.|++.++..++.||.+|++|+|.|...+
T Consensus 234 kll~~Pl~~~~~~~~------~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 234 KLLLAPLVALLVAKL------LGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHHHHHHHH------cCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998774 33466677999999999999999999999999999999999999999999999999887
Q ss_pred HH
Q 024175 267 MW 268 (271)
Q Consensus 267 ~~ 268 (271)
.+
T Consensus 308 ~~ 309 (311)
T COG0679 308 LR 309 (311)
T ss_pred hc
Confidence 65
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=98.93 E-value=5.9e-09 Score=96.47 Aligned_cols=109 Identities=16% Similarity=0.115 Sum_probs=93.1
Q ss_pred hHHHHHHHhHhccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHH
Q 024175 155 IPCITLILGGNLIQGLRS-STLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 233 (271)
Q Consensus 155 iPl~lliLG~~L~~~~~~-~~~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~ 233 (271)
..++|+.+|.++.....+ ...+++......+.|++++|++++.+.+. ++.||.+...+++.+|+|++.++.++
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~------~~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV------FKLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHheeeCCCchHHHHH
Confidence 677899999999864322 22334567778889999999999988764 24688999999999999999999999
Q ss_pred HhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 234 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWI 269 (271)
Q Consensus 234 Aq~~g~~~~~~S~il~~syllSivtlplw~~lf~~l 269 (271)
++++|+|.+.++.++..++++|++++|+|..++...
T Consensus 88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~ 123 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKM 123 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988653
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.36 E-value=5.7e-06 Score=71.73 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=83.4
Q ss_pred hHHHHHHHhHhccccc-ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHH
Q 024175 155 IPCITLILGGNLIQGL-RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 233 (271)
Q Consensus 155 iPl~lliLG~~L~~~~-~~~~~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~ 233 (271)
+-++|+.+|.++.... ++...+++.+....+..++++|++++++.+.+ ++.+|.+..-+++.++.|.+..+..+
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 4567888888887532 22233456777788999999999999998432 45788899999999999999999999
Q ss_pred HhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 234 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 268 (271)
Q Consensus 234 Aq~~g~~~~~~S~il~~syllSivtlplw~~lf~~ 268 (271)
+...|+|...+..+..++++++++.+|+|..++..
T Consensus 79 t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 79 TYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988753
No 8
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.31 E-value=2.4e-05 Score=74.04 Aligned_cols=141 Identities=15% Similarity=0.030 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhH------HHHHHHhHhcccc-cccCCCchhHHHHHH
Q 024175 112 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIP------CITLILGGNLIQG-LRSSTLKPLIIIAVV 184 (271)
Q Consensus 112 P~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiP------l~lliLG~~L~~~-~~~~~~~~~~i~~iv 184 (271)
..+.++++|++++..-| ......... .+.+...| .+|+.+|.++... .++...++|.+....
T Consensus 11 ~~~~~~i~~~~~g~~~P---------~~~~~~~~~--~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~ 79 (328)
T TIGR00832 11 WIFLAIAAGVGLGVLFP---------SVFQALAAL--EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSL 79 (328)
T ss_pred HHHHHHHHHHHHHHhcc---------ccHHHHHHH--HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHH
Confidence 44677778888887643 111122111 22334555 3677777887643 223334557788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 024175 185 CVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSM 264 (271)
Q Consensus 185 ~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~ 264 (271)
+.-++++|++++++.+.+ ++.+|.+..=+++.+|.|.+..+..++...++|...+-.+...+++++++++|.+..
T Consensus 80 ~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ 154 (328)
T TIGR00832 80 FINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAW 154 (328)
T ss_pred HHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998753 356778889999999999999999999999999999988889999999999999998
Q ss_pred HHHH
Q 024175 265 VYMW 268 (271)
Q Consensus 265 lf~~ 268 (271)
+|..
T Consensus 155 ll~~ 158 (328)
T TIGR00832 155 LLLG 158 (328)
T ss_pred HHHh
Confidence 8864
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.07 E-value=6.4e-05 Score=70.87 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=91.6
Q ss_pred chhHHHHHHHhHhccccc-ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHH
Q 024175 153 GTIPCITLILGGNLIQGL-RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG 231 (271)
Q Consensus 153 aaiPl~lliLG~~L~~~~-~~~~~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~ 231 (271)
..+-++|+..|..|.... +..-.+++....+.+.-++++|++++++.+. ++.||....=+++.++.|.++.+-
T Consensus 42 ~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~------~~l~~~l~~Gl~ll~~~Pggv~S~ 115 (319)
T COG0385 42 IALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKL------FPLPPELAVGLLLLGCCPGGVASN 115 (319)
T ss_pred HHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHhHHheeeCCCchhHH
Confidence 345567777788887532 2344566778888999999999999999975 456888888889999999999999
Q ss_pred HHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 232 TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 268 (271)
Q Consensus 232 i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf~~ 268 (271)
.++..+++|...+=.....+++++++..|++..+|+.
T Consensus 116 ~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 116 AMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999888888889999999999999998763
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.74 E-value=0.00027 Score=66.46 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhccccc-ccCCCchhHHHHHHHHHHHH
Q 024175 112 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGL-RSSTLKPLIIIAVVCVRYIA 190 (271)
Q Consensus 112 P~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~-~~~~~~~~~i~~iv~vRlil 190 (271)
+-+++.+++.+++..-|-. +. ....+. .+......+.+..++-|.+|.... ++...+++........-+++
T Consensus 2 ~fl~~l~~ai~la~~~P~~----g~--~~~~~~--~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl 73 (313)
T PF13593_consen 2 WFLLGLLLAILLAYLFPAP----GA--AGGVIK--PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVL 73 (313)
T ss_pred chHHHHHHHHHHHHHcCcc----cc--cCCccc--hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4456667777776653311 10 001221 023334458888999999887532 22334456677778889999
Q ss_pred HHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHH-HHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 191 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG-TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 267 (271)
Q Consensus 191 lPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~-i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf~ 267 (271)
.|++++++..+... + .++.+..=+++.+|+|+.+.+. .++++-|+|+..+-.....+.++.++..|+|+.+++
T Consensus 74 ~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 74 FPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 99999998876432 2 4667888899999999997765 699999999888888888899999999999998886
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.16 Score=48.47 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHH--HhcCchhHHHHHHHhHh---ccccc----ccCCCchhHHHHH
Q 024175 113 PTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE--ILGDGTIPCITLILGGN---LIQGL----RSSTLKPLIIIAV 183 (271)
Q Consensus 113 ~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~--~lG~aaiPl~lliLG~~---L~~~~----~~~~~~~~~i~~i 183 (271)
.+++.++|+.+|..-| -+.+.+. ..|+..+|.....+=+- +.+.+ +.-.-++|.+...
T Consensus 20 v~l~i~~Gi~lG~~~p-------------~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~ls 86 (342)
T COG0798 20 VFLAIAIGILLGVHFP-------------GLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILS 86 (342)
T ss_pred HHHHHHHHHHHHhccc-------------chhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHH
Confidence 4778888888877642 1333333 56777787765433221 12211 1122235678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 024175 184 VCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS 263 (271)
Q Consensus 184 v~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~ 263 (271)
.+.-.++-|++.+.+.+++ +++-|.++.=+++....|+-.....-+++-++|.+.++..+.+..++.++..+.+.
T Consensus 87 L~~Nwii~P~lm~~la~~f-----l~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 87 LFVNWIIGPLLMFALAWFF-----LPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999874 45677888888888889998888999999999999999999999999999999999
Q ss_pred HHHHHH
Q 024175 264 MVYMWI 269 (271)
Q Consensus 264 ~lf~~l 269 (271)
.+|+..
T Consensus 162 ~~~l~v 167 (342)
T COG0798 162 KFFLGV 167 (342)
T ss_pred HHHHhh
Confidence 998765
No 12
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=86.35 E-value=0.77 Score=44.52 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=70.1
Q ss_pred HHHHHHHhHhcccccccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHH
Q 024175 156 PCITLILGGNLIQGLRSSTL-KPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMT 234 (271)
Q Consensus 156 Pl~lliLG~~L~~~~~~~~~-~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~A 234 (271)
-..++.+|.++.-....... .+..+....+.++++.|+.++...+.+ .+|.+. ...+++.+|.+|+.-.....
T Consensus 120 ~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~----~lP~~~--~ag~~Lvtc~~p~g~~~~~~ 193 (371)
T KOG2718|consen 120 LSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVL----LLPAAL--AAGLLLVTCVSPGGGGNYLT 193 (371)
T ss_pred HHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHh----hCCccc--cceeEEEEeccCCcchhhhe
Confidence 35567778777643322222 223344455569999999999876532 234322 14567778888888777777
Q ss_pred hHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 235 QLF-DVAQEECSVLFLWTYLVAALALTGWSMVYM 267 (271)
Q Consensus 235 q~~-g~~~~~~S~il~~syllSivtlplw~~lf~ 267 (271)
..+ +.|....-.+...+++.+++..|+|...+.
T Consensus 194 ~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~ 227 (371)
T KOG2718|consen 194 SKRLPGDVTLSILMTTISTVLAVILTPLLSILLG 227 (371)
T ss_pred eecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777 666656666666789999999999988763
No 13
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=83.07 E-value=33 Score=30.85 Aligned_cols=136 Identities=20% Similarity=0.155 Sum_probs=76.7
Q ss_pred hcChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHHH
Q 024175 109 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 188 (271)
Q Consensus 109 l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRl 188 (271)
++||.+++.++-..+-..- +.|..--.+.-+++...--|. +..+|.-|++..+.-+-+++.+...+++=-
T Consensus 19 ~l~P~l~a~~~ii~~L~~~---------~i~y~~Y~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~ 88 (215)
T PF04172_consen 19 FLNPLLIAIVLIIAFLLLT---------GIPYEDYMQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGS 88 (215)
T ss_pred cccHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999887755443332 245544444555555554554 668888888754333333444444444443
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh-ccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 024175 189 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQF-TLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS 263 (271)
Q Consensus 189 illPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~-a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~ 263 (271)
++--...+.+.+. +| .|+.....+.--+ .+|-|+. ++++.|+++...+.++..|=++-.+.=|.++
T Consensus 89 ~~~~~~~~~l~~~---lg---l~~~~~~Sl~pkSVTtpiAi~---is~~iGG~~sLta~~VvitGi~Ga~~g~~ll 155 (215)
T PF04172_consen 89 LVSIFSAVLLARL---LG---LSPEIILSLAPKSVTTPIAIE---ISEQIGGIPSLTAVFVVITGILGAVLGPPLL 155 (215)
T ss_pred HHHHHHHHHHHHH---HC---cCHHHHHHHHHHHhhHHHHHH---HHHHhCChHHHHHHHHHHHhhHHHHhHHHHH
Confidence 4333333333332 34 3554444444433 3666654 6788899998888888877666555445443
No 14
>PRK10711 hypothetical protein; Provisional
Probab=80.69 E-value=45 Score=30.38 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=79.7
Q ss_pred hcChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHHH
Q 024175 109 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 188 (271)
Q Consensus 109 l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRl 188 (271)
++||.+++.++-..+-..- +.|..--++.-+++...--|. +..++.-|++..+.-+.+++.+...+++=-
T Consensus 30 ~l~Pll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~q~~~lk~~~~~I~~~~~vG~ 99 (231)
T PRK10711 30 LLNPLLVAMVVIIPFLLLT---------GIPYEHYFKGSEVLNDLLQPA-VVALAFPLYEQLHQIRARWKSIISICFIGS 99 (231)
T ss_pred cccHHHHHHHHHHHHHHHh---------CCCHHHHHhccHHHHhhhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5799999987665554442 245433344445555555554 347777888754333334445555554444
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc-cchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 024175 189 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS 263 (271)
Q Consensus 189 illPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a-~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~ 263 (271)
++--...+.+.+. +| .|+.....++-.+. +|-|+. +++..|+.++..+.++..|=++-.+--|..+
T Consensus 100 ~v~i~s~~~l~~~---lg---~~~~~~~Sl~pkSVTtPIAm~---is~~iGG~~sLta~~ViitGi~Ga~~g~~ll 166 (231)
T PRK10711 100 VVAMVTGTAVALW---MG---ATPEIAASILPKSVTTPIAMA---VGGSIGGIPAISAVCVIFVGILGAVFGHTLL 166 (231)
T ss_pred HHHHHHHHHHHHH---HC---cCHHHHHHHhhhhhhHHHHHH---HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444442 34 45655555555544 677765 5689999999988888887666555444433
No 15
>COG2855 Predicted membrane protein [Function unknown]
Probab=76.81 E-value=25 Score=33.72 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=74.9
Q ss_pred ChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHHHHH
Q 024175 111 APPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIA 190 (271)
Q Consensus 111 nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRlil 190 (271)
.|+++|+++|++++..+..++- ....++.=..--.....+.+|.++.-..-. ....+ .+.+...-+.
T Consensus 38 ~al~lAIllGi~l~~l~~~~~~----------~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~-~~G~~-~v~~~~~~l~- 104 (334)
T COG2855 38 SALTLAILLGILLGILPQIPAQ----------TSAGITFSSKKLLRLGIVLLGFRLTLSDIA-DVGGS-GVLIIAITLS- 104 (334)
T ss_pred hHHHHHHHHHHHHhccccchhh----------hccchhhhHHHHHHHHHHHHcceeeHHHHH-HcCcc-HHHHHHHHHH-
Confidence 3999999999999976643321 112223333344566777888888743211 11111 2222222112
Q ss_pred HHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHH--hHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 191 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMT--QLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 268 (271)
Q Consensus 191 lPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~A--q~~g~~~~~~S~il~~syllSivtlplw~~lf~~ 268 (271)
..+.+...+.+ ++..|+ +.++++-++.--.-.+.++| ..-+.++++.+..+..-+++..+.+.+.-.++-|
T Consensus 105 ---~t~~~~~~lg~--~lgld~--~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~ 177 (334)
T COG2855 105 ---STFLFAYFLGK--LLGLDK--KLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPL 177 (334)
T ss_pred ---HHHHHHHHHHH--HhCCCH--HHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 22233333333 233465 66777777776666667776 4467777777666666666655555555555544
No 16
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=74.85 E-value=59 Score=29.63 Aligned_cols=138 Identities=17% Similarity=0.101 Sum_probs=75.0
Q ss_pred hcChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHHH
Q 024175 109 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 188 (271)
Q Consensus 109 l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRl 188 (271)
+.||.+++.++...+-..- +.|..-=.+.-+.+-..--| ++..++.=|++..+.-+-+++.+...+++=-
T Consensus 32 ~l~PlLv~~~~li~~L~~~---------~i~Y~~Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs 101 (230)
T COG1346 32 FLNPLLVATVLLIAFLLLF---------GISYEDYMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGS 101 (230)
T ss_pred ccchHHHHHHHHHHHHHHc---------CCCHHHHhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999888776665442 12322222222223233334 4556777888754444444555555544443
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc-cchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 189 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMV 265 (271)
Q Consensus 189 illPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a-~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~l 265 (271)
++-=..++.+.+ .+| .|+....-++=.+. +|-|+- +++..|+-++..+..+..+=++-.+.-|..+-+
T Consensus 102 ~~ai~s~~llak---~~g---~~~~~~~Sl~PkSvTTpiAm~---vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~ 170 (230)
T COG1346 102 VVAIISGVLLAK---LFG---LSPELILSLLPKSVTTPIAME---VSESIGGIPALTAVFVILTGILGAVLGPLLLKL 170 (230)
T ss_pred HHHHHHHHHHHH---HhC---CCHHHHHHhcccccccHHHHH---HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322223333333 234 46655555544443 555553 677888888888888887766666655555443
No 17
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=71.98 E-value=1.1e+02 Score=31.63 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=71.4
Q ss_pred hhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 024175 141 RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMV 220 (271)
Q Consensus 141 ~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll 220 (271)
+-+.+.++-+.+.-.|+-.+.+|+++.-.... ..+..++..++..++.=++.+++..+. +|. +...-...-+.+
T Consensus 260 ~~le~~i~pf~~lll~lFFi~vG~~id~~~l~--~~~~~il~~~~~~~~~K~~~~~~~~~~---~g~-~~~~a~~~gl~L 333 (621)
T PRK03562 260 HALESDIEPFKGLLLGLFFIAVGMSIDFGTLL--ENPLRILILLLGFLAIKIAMLWLLARP---LGV-PRKQRRWFAVLL 333 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---hCC-CHhHHHHHHHHH
Confidence 45666677677788899999999988642111 112233344444444334444444432 232 212223344455
Q ss_pred hhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 221 QFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVY 266 (271)
Q Consensus 221 ~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf 266 (271)
...-..+.....++...|.=..+....+....++|.+.-|+...++
T Consensus 334 ~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 334 GQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLL 379 (621)
T ss_pred hccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777777777877876555666666678888888888776654
No 18
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=68.42 E-value=35 Score=33.61 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=78.6
Q ss_pred hhhhhhhHHHHHHH---HHH-hcChhHHHHHHHHHHHhhhhhhHhhhc----CCCch-hhHHHHHHHhcCchhHHHHHHH
Q 024175 92 ESFWKRSLEFLHQL---LEE-LLAPPTLAAIVGFIFGAVVWLRNLIIG----DSAPL-RVIQDSIEILGDGTIPCITLIL 162 (271)
Q Consensus 92 ~~~~~~~~~~~~~~---lk~-l~nP~iiA~ilGlii~~~~~lr~~l~~----~~~pL-~~I~~al~~lG~aaiPl~lliL 162 (271)
..-|+..+.....+ +.. -+|=......+|.+..-..|-+..+|. .-.|| ..+.-+.+.++.-+.|- +
T Consensus 53 ~~~w~~~k~~~~~l~~Vll~~~l~~lf~f~pl~~~~h~~~~s~~~vF~lsll~iiPLA~~l~~ateqls~~tg~t----v 128 (441)
T KOG1397|consen 53 HAPWKYLKNVLTNLQEVLLSTKLNLLFPFVPLAIIAHWFTWSKGWVFLLSLLGIIPLAERLGFATEQLSAYTGPT----V 128 (441)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccchHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCc----H
Confidence 44566444333322 222 234444466777777666655554442 34577 45666666666555553 2
Q ss_pred hHhcccc---------------cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchH
Q 024175 163 GGNLIQG---------------LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPA 227 (271)
Q Consensus 163 G~~L~~~---------------~~~~~~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A 227 (271)
|+-|.-. .++.+.-...+++.+..-++++|-..+...-..++.......+--....++..|+=..
T Consensus 129 GgllNAtfGnaiElii~ilALk~g~~riVq~SlLGSILsnlLLvlG~s~~~Ggi~rk~Q~Fn~~~A~v~s~lLl~a~l~~ 208 (441)
T KOG1397|consen 129 GGLLNATFGNAIELIIYILALKNGKVRIVQGSLLGSILSNLLLVLGLSLFCGGIRRKDQRFNIKSAGVNSALLLLAVLGI 208 (441)
T ss_pred HHHHhhhhccHHHHHHHHHHhhcCceEEEehhhHHHHHHHHHHHhhHHHhhcccccceeecccchhhHHHHHHHHHHHHH
Confidence 3332210 1122222356778888888888876665543333333322112222333444444444
Q ss_pred HHHHHHHhHcCCChhHHHH---HHHHHHHHHHH
Q 024175 228 MNIGTMTQLFDVAQEECSV---LFLWTYLVAAL 257 (271)
Q Consensus 228 ~n~~i~Aq~~g~~~~~~S~---il~~syllSiv 257 (271)
....++-..|+.....|+. .+-.|+.+|++
T Consensus 209 l~P~~l~~~~~~~~~~~~~~~~~l~lSr~~Siv 241 (441)
T KOG1397|consen 209 LLPTVLHYTYGGEVHDCSSGGAILPLSRGCSIV 241 (441)
T ss_pred HHHHHHHHhcCccccccCCccceeeehhccHHH
Confidence 4445555566654433322 44444444444
No 19
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=65.74 E-value=1.7e+02 Score=30.10 Aligned_cols=120 Identities=12% Similarity=0.050 Sum_probs=69.9
Q ss_pred hhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 024175 141 RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMV 220 (271)
Q Consensus 141 ~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll 220 (271)
+-+.+.++-..+.-.|+--+.+|+++.-..... .+..++..++..++.=++.+++..+. +|. +...-...-+.+
T Consensus 257 ~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~~K~~~~~~~~~~---~g~-~~~~al~~g~~L 330 (601)
T PRK03659 257 HELEIAIEPFKGLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVAVKGLVLYLLARL---YGL-RSSERMQFAGVL 330 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHH---hCC-CHHHHHHHHHHH
Confidence 455666666778889999999999886422111 12333444444444444444444432 232 211122333444
Q ss_pred hhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 221 QFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVY 266 (271)
Q Consensus 221 ~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf 266 (271)
...-.-+.....++..+|.=.++....+....+++.+.-|+...++
T Consensus 331 ~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 331 SQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred hccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555677777777777876555666666777888887777766553
No 20
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=64.71 E-value=1.1e+02 Score=27.75 Aligned_cols=135 Identities=19% Similarity=0.116 Sum_probs=73.0
Q ss_pred hcChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHHH
Q 024175 109 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 188 (271)
Q Consensus 109 l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRl 188 (271)
++||.+++.++-..+-..- +.|..--++.-+.+...--|. +..++.-|++..+.-+.++..+...+++=-
T Consensus 29 ~lnPvl~~~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~~~~~lk~~~~~Il~~~~~G~ 98 (226)
T TIGR00659 29 YLNPLLLTPLVLVGILLLV---------GIPYESYMLGGGVINDLLGPA-VVALAIPLYKQLPQIKKYWKEIILNVAVGS 98 (226)
T ss_pred cccHHHHHHHHHHHHHHHh---------CCCHHHHHHhhHHHHHhhHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5799999988665554432 234432234444444333343 346677788754333333344444444333
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc-cchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 024175 189 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGW 262 (271)
Q Consensus 189 illPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a-~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw 262 (271)
++--...+.+.+. +| .|+.....+.-.+. +|-|+- +++..|++++..+.++..|=++-.+.-|..
T Consensus 99 ~~~~~s~~~la~~---lg---~~~~i~~Sl~pkSvTtpiAm~---vs~~iGG~~sLta~~vvitGi~Ga~~g~~l 164 (226)
T TIGR00659 99 VIAIISGTLLALL---LG---LGPEIIASLLPKSVTTPIAMH---VSEMIGGIPAVTAVFVILTGLLGTVFGPMV 164 (226)
T ss_pred HHHHHHHHHHHHH---HC---cCHHHHHHhhhHHhhHHHHHH---HHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332 34 35544444444443 565654 678899999888888887766655544433
No 21
>COG3329 Predicted permease [General function prediction only]
Probab=63.86 E-value=18 Score=34.56 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=40.2
Q ss_pred HHHHHHH-hcChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccc
Q 024175 102 LHQLLEE-LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQG 169 (271)
Q Consensus 102 ~~~~lk~-l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~ 169 (271)
+++++++ +.||.++..+.|+++|++...| +-.++.+..+-+=+...-+-|+.+|+.-.+.
T Consensus 207 ~~ell~Esflnpal~lllggl~iGlitGe~--------g~~vl~~F~~~lFqGvL~lflL~MGm~A~rr 267 (372)
T COG3329 207 IWELLQESFLNPALVLLLGGLAIGLITGEQ--------GESVLKPFFDPLFQGVLCLFLLDMGMTAGRR 267 (372)
T ss_pred hHHHHHHHHcCchHHHHHHHHHHhheeccC--------chhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 3566665 6899999999999999886322 2234444334444455667788888887653
No 22
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=63.75 E-value=1.2e+02 Score=27.71 Aligned_cols=135 Identities=14% Similarity=0.071 Sum_probs=76.1
Q ss_pred hcChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHHH
Q 024175 109 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 188 (271)
Q Consensus 109 l~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRl 188 (271)
++||.+++.++-..+-..- +.|..--++.-+.+-..--|. +..++.-|++..+.-+-+++.+...+++=-
T Consensus 35 ~lnPll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~q~~~lk~~~~~Il~~~~vG~ 104 (232)
T PRK04288 35 LFTPLFVAMVLGIAFLKLT---------GISYEEYNIGGDIISFFLEPA-TIAFAIPLYKKRDVLKKYWWQILGGIVVGS 104 (232)
T ss_pred chhHHHHHHHHHHHHHHHh---------CCCHHHHHhhhHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4799999887766554442 244433344444444444443 336677888754333333444555444444
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc-cchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 024175 189 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGW 262 (271)
Q Consensus 189 illPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a-~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw 262 (271)
++--+..+.+.+. +| .|+....-++=.+. +|-|+. +++..|+.+...+.++..+=++-.+--|..
T Consensus 105 ~~~i~s~~~la~~---lg---l~~~~~~Sl~pKSVTtPIAm~---is~~iGG~psLtA~~ViitGi~Gai~g~~l 170 (232)
T PRK04288 105 VCSVLIIYLVAKL---IQ---LDNAVMASMLPQAATTAIALP---VSAGIGGIKEITSFAVIFNAVIIYALGAKF 170 (232)
T ss_pred HHHHHHHHHHHHH---HC---cCHHHHHHHhhHhhhHHHHHH---HHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333334444432 34 46655555554444 566664 678999999998888888866665544443
No 23
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=59.93 E-value=1.4e+02 Score=28.10 Aligned_cols=135 Identities=11% Similarity=0.049 Sum_probs=71.6
Q ss_pred hcChhHHHHHHHHHHHh-hhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHHHHHHH
Q 024175 109 LLAPPTLAAIVGFIFGA-VVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVR 187 (271)
Q Consensus 109 l~nP~iiA~ilGlii~~-~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~iv~vR 187 (271)
-.++.++|+++|++++- +.. ..+.....++.-.+--.....+.+|.++.-..- .....+.+...
T Consensus 25 ~l~~~~~AillG~~i~n~~~~----------~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i-~~~G~~~~~~~---- 89 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNLFFG----------LPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDI-LALGWKGLLII---- 89 (305)
T ss_pred CccHHHHHHHHHHHHhhhccC----------CcHHHHhHHHHHHHHHHHHHHHHHCccccHHHH-HHhCccHHHHH----
Confidence 35788999999999973 321 115666777888888899999999999875321 11122122221
Q ss_pred HHHHHHHHHHHHHHH-HHcCCCCCChHHHHHHHHhhccchHHHHHHHH--hHcCCChhHH---HHHHHHHHHHHHHHHHH
Q 024175 188 YIALPFIGVWVVKAA-AALGFLPSDPLYHYVLMVQFTLPPAMNIGTMT--QLFDVAQEEC---SVLFLWTYLVAALALTG 261 (271)
Q Consensus 188 lillPli~~~iv~~~-~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~A--q~~g~~~~~~---S~il~~syllSivtlpl 261 (271)
.+.+........++. ..++ .|+ ....++-+++-..-.+.++| ..-+.++++. -.+++.--.++++.+|.
T Consensus 90 ~~~v~~~~~~~~~lg~r~~~---l~~--~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~ 164 (305)
T PF03601_consen 90 IIVVILTFLLTYWLGRRLFG---LDR--KLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCH--HHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHH
Confidence 122222222222222 2344 354 35555666555554555555 3344444443 33333444445555665
Q ss_pred HH
Q 024175 262 WS 263 (271)
Q Consensus 262 w~ 263 (271)
..
T Consensus 165 l~ 166 (305)
T PF03601_consen 165 LG 166 (305)
T ss_pred HH
Confidence 43
No 24
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=56.98 E-value=39 Score=30.86 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=56.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHH-HhHcCCChhHHHHHHHHHHH
Q 024175 175 LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM-TQLFDVAQEECSVLFLWTYL 253 (271)
Q Consensus 175 ~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~-Aq~~g~~~~~~S~il~~syl 253 (271)
.+++.-+.+.+.-+.+.|.+.++++-.. +. -|.|..+..-+.+..|||+...+.++ +..-|+++ +...+-|..
T Consensus 81 ~~w~LhLFilI~~Ll~tPs~~~Lf~~~~-~~--~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa---~A~~v~S~f 154 (287)
T KOG4821|consen 81 LNWRLHLFILILSLLITPSIVYLFCCAV-KA--AKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNA---SALCVCSVF 154 (287)
T ss_pred hCCchHHHHHHHHHHHhHHHHHHHHHHH-hC--cchhHHHHhhheeeeecCCccccceeeeeccCccH---HHHHHHHHH
Confidence 4455666777788999999999887543 21 12566677778899999999977655 45556654 555566777
Q ss_pred HHHHHHHHHH
Q 024175 254 VAALALTGWS 263 (271)
Q Consensus 254 lSivtlplw~ 263 (271)
.++++.+...
T Consensus 155 ~g~L~~~~i~ 164 (287)
T KOG4821|consen 155 IGNLLGAFIT 164 (287)
T ss_pred HHHHhhhHHH
Confidence 7777666433
No 25
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=54.65 E-value=2.2e+02 Score=29.34 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=36.9
Q ss_pred HHHHHHhcChhHHHHHH-HHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhccc
Q 024175 103 HQLLEELLAPPTLAAIV-GFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQ 168 (271)
Q Consensus 103 ~~~lk~l~nP~iiA~il-Glii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~ 168 (271)
..+.|++.-|++++-++ |+++|=.. ++- . .-.+.++.+++..+.+.|+.+|..+.-
T Consensus 21 ~~l~~rl~lp~vlgyilaGillGP~~------lg~-i---~~~~~i~~laelGvv~LlF~iGLEl~~ 77 (621)
T PRK03562 21 VPIAVRLGLGSVLGYLIAGCIIGPWG------LRL-V---TDVESILHFAEFGVVLMLFVIGLELDP 77 (621)
T ss_pred HHHHHHhCCChHHHHHHHHHHhCccc------ccC-C---CCHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 35567778888888755 55554110 010 0 012457889999999999999999874
No 26
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=44.14 E-value=2.8e+02 Score=26.88 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHH-HHHHHHhHcCCChhHHHH
Q 024175 193 FIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAM-NIGTMTQLFDVAQEECSV 246 (271)
Q Consensus 193 li~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~-n~~i~Aq~~g~~~~~~S~ 246 (271)
++++...++..+++.+| +.-. +..++|-+. .+..|||.||.|...+|-
T Consensus 99 ~~s~l~g~ll~r~~~~~--~~Ta----~~gs~PGgas~m~~iA~d~gAd~~~VAl 147 (352)
T COG3180 99 LSSILLGWLLKRFSILP--GNTA----FLGSSPGGASAMVSIAQDYGADLRLVAL 147 (352)
T ss_pred HHHHHHHHHHHHhcCCC--cchh----hHhcCCchHHHHHHHHHHhCCChhHHHH
Confidence 34555555555666443 2222 246778665 678899999999876543
No 27
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=43.76 E-value=1.8e+02 Score=23.84 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=31.6
Q ss_pred ChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHH
Q 024175 211 DPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTY 252 (271)
Q Consensus 211 dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~sy 252 (271)
++...-.+.+..++=.+..+.++.|.|+.+.+...-...|+-
T Consensus 87 ~~~~~~~l~~l~~~l~ga~ialigQ~y~~~~~~~~~~~~W~~ 128 (145)
T PF09925_consen 87 SPRLAEALLLLGAVLFGALIALIGQIYQTGADPWQLFLLWAL 128 (145)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchHHHHHHHHH
Confidence 454555566666655888899999999999888888877743
No 28
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=35.31 E-value=2.6e+02 Score=23.27 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=27.9
Q ss_pred HHhhccchHH-HHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 024175 219 MVQFTLPPAM-NIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSM 264 (271)
Q Consensus 219 ll~~a~P~A~-n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~ 264 (271)
.+.+++|-+. -+..+|+.+|.|...++..=..=-++-++++|.+..
T Consensus 108 a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~ 154 (156)
T TIGR03082 108 AFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLAR 154 (156)
T ss_pred HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889887 556788999999876544322222333345665443
No 29
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=33.74 E-value=2.7e+02 Score=26.58 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=49.0
Q ss_pred HHHHHHHhHhcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCChHHHHHHHHhhccchHHHH
Q 024175 156 PCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGF-----LPSDPLYHYVLMVQFTLPPAMNI 230 (271)
Q Consensus 156 Pl~lliLG~~L~~~~~~~~~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~-----l~~dpl~~~Vlll~~a~P~A~n~ 230 (271)
-+-+++.|+++.- |......++-...+..|+++-=++++.+.+++...|. +.. -.+-+.+|+-.....
T Consensus 52 g~~l~~~Ga~I~~--k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~Gl-----S~LAiiaa~~~~Ngg 124 (314)
T PF03812_consen 52 GVFLFCMGAQIDL--KSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGL-----SALAIIAAMTNSNGG 124 (314)
T ss_pred HHHHHHhccccch--hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccch-----HHHHHHHHHhcCCHH
Confidence 3457788888874 3333344566677899999888888888776543331 222 334444555444443
Q ss_pred HHH--HhHcCCChhHHH
Q 024175 231 GTM--TQLFDVAQEECS 245 (271)
Q Consensus 231 ~i~--Aq~~g~~~~~~S 245 (271)
..+ +++||-+++..+
T Consensus 125 LY~aL~~~yGd~~D~gA 141 (314)
T PF03812_consen 125 LYLALMGQYGDEEDVGA 141 (314)
T ss_pred HHHHHHHHhCCHHHhHH
Confidence 333 367877654443
No 30
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=29.35 E-value=6.4e+02 Score=25.86 Aligned_cols=117 Identities=15% Similarity=0.013 Sum_probs=57.8
Q ss_pred HHHHHhcChhHHHHHH-HHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhHHHH
Q 024175 104 QLLEELLAPPTLAAIV-GFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIA 182 (271)
Q Consensus 104 ~~lk~l~nP~iiA~il-Glii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~i~~ 182 (271)
.+.+++.-|++++-++ |+++|=.. ++- . . -.+.+..+++..+.+.|+.+|..+.-...++ ..+.++.
T Consensus 22 ~l~~rl~~p~ilg~ilaGillGP~~------lg~-i--~-~~~~i~~laelGvv~LLF~iGLel~~~~l~~--~~~~~~~ 89 (601)
T PRK03659 22 PLAQRLGIGAVLGYLLAGIAIGPWG------LGF-I--S-DVDEILHFSELGVVFLMFIIGLELNPSKLWQ--LRRSIFG 89 (601)
T ss_pred HHHHHhCCChHHHHHHHHHHhcccc------ccC-C--C-cHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHH
Confidence 3456667788888655 55543110 010 0 0 1245678899999999999999887421111 1223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHHhHc
Q 024175 183 VVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLF 237 (271)
Q Consensus 183 iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~Aq~~ 237 (271)
.... .+++|.+....+. ...|+ + -+....+.+..+...+|+..-++.++-
T Consensus 90 ~g~~-~v~~t~~~~~~~~--~~~g~-~-~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 90 VGAA-QVLLSAAVLAGLL--MLTDF-S-WQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred HHHH-HHHHHHHHHHHHH--HHHcc-C-HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333 3444443332221 12232 1 122223334444556666666666553
No 31
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=27.21 E-value=2.5e+02 Score=26.82 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=46.0
Q ss_pred HHHHHHhHhcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHH---
Q 024175 157 CITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM--- 233 (271)
Q Consensus 157 l~lliLG~~L~~~~~~~~~~~~~i~~iv~vRlillPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~--- 233 (271)
+-+++.|+++.- |......++-...+..|.++-=++++.+.+++...|++..++ +-+.+|+=-. |.++.
T Consensus 53 ~~~~~~Ga~I~~--k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~-----laiiaa~~~~-Ng~ly~al 124 (312)
T PRK12460 53 AFLLCMGAQISL--KAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSG-----LAIVAAMSNS-NGGLYAAL 124 (312)
T ss_pred HHHHHhcCeeec--cccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHH-----HHHHHHHhcC-cHHHHHHH
Confidence 457888988874 233333344556678898887777887777654444443333 3333333333 33443
Q ss_pred HhHcCCChhH
Q 024175 234 TQLFDVAQEE 243 (271)
Q Consensus 234 Aq~~g~~~~~ 243 (271)
+++||.+++.
T Consensus 125 ~~~yG~~~d~ 134 (312)
T PRK12460 125 MGEFGDERDV 134 (312)
T ss_pred HHHcCCHhhh
Confidence 5788876543
No 32
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=24.64 E-value=5.8e+02 Score=24.62 Aligned_cols=46 Identities=9% Similarity=0.177 Sum_probs=35.2
Q ss_pred hccchHHH-------HHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 222 FTLPPAMN-------IGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 267 (271)
Q Consensus 222 ~a~P~A~n-------~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf~ 267 (271)
.+.|.... +..+++.++.|++..-+.+++.+++..+..-+|....+
T Consensus 188 ~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~l 240 (394)
T PF03222_consen 188 PALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSIL 240 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 34567788999999999999999998888888876554
No 33
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.94 E-value=6e+02 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024175 181 IAVVCVRYIALPFIGVWVVKAAAALGF 207 (271)
Q Consensus 181 ~~iv~vRlillPli~~~iv~~~~~~g~ 207 (271)
+.++++=++-.|...-.+.+.+++.|.
T Consensus 71 LLiIvFllLTaPVaSHaIARAAyr~Gv 97 (197)
T PRK12585 71 LLAVLFIFLTTPVASHLINRAAYDTGV 97 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444488899999999988877774
Done!