Query 024175
Match_columns 271
No_of_seqs 176 out of 1000
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.0 1.5E-09 5E-14 101.2 12.5 139 110-267 17-156 (332)
2 1nov_D Nodamura virus coat pro 59.1 14 0.00049 23.9 4.1 34 93-126 2-36 (44)
3 2z2q_B Coat protein gamma; wil 52.6 20 0.0007 23.2 4.0 31 93-123 2-33 (44)
4 1f8v_D Mature capsid protein g 19.8 18 0.00062 23.0 -0.4 14 93-106 2-15 (40)
5 3rlb_A THIT; S-component, ECF 10.7 6.8E+02 0.023 20.6 7.7 78 110-196 60-140 (192)
6 1tm9_A GI3844938, hypothetical 8.4 2.7E+02 0.0091 21.4 3.0 19 192-210 94-112 (137)
7 2zy9_A Mg2+ transporter MGTE; 6.2 1.5E+03 0.05 20.8 10.4 49 220-269 421-469 (473)
8 4dra_A Centromere protein S; D 5.8 6.8E+02 0.023 19.1 4.3 40 88-127 23-65 (113)
9 2kog_A Vesicle-associated memb 4.2 1E+03 0.036 17.9 4.4 16 106-121 93-108 (119)
10 3arc_I Photosystem II reaction 3.9 4.7E+02 0.016 16.2 1.7 8 205-212 21-28 (38)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.04 E-value=1.5e-09 Score=101.15 Aligned_cols=139 Identities=12% Similarity=-0.051 Sum_probs=109.0
Q ss_pred cChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhccccccc-CCCchhHHHHHHHHHH
Q 024175 110 LAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRS-STLKPLIIIAVVCVRY 188 (271)
Q Consensus 110 ~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~-~~~~~~~i~~iv~vRl 188 (271)
-++..+.+++|.+++.+-|- ....+ +..-..++.++|+..|.++.....+ ...+++......+.++
T Consensus 17 ~~~~~l~i~~~~~lg~~~P~---------~~~~~----~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~ 83 (332)
T 3zux_A 17 GKTFSLWAALFAAAAFFAPD---------TFKWA----GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF 83 (332)
T ss_dssp HHTHHHHHHHHHHHHHHCGG---------GTGGG----GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcch---------hhhhh----HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHH
Confidence 35667788888888776431 00111 1122347889999999999864322 2234566677789999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 189 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 267 (271)
Q Consensus 189 illPli~~~iv~~~~~~g~l~~dpl~~~Vlll~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf~ 267 (271)
+++|++++++.++ ++.||.+...+++.+|+|++..+.++++++|+|.+.+......+++++++++|+|..++.
T Consensus 84 vi~Pll~~~l~~~------~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 84 AIMPATAWCLSKL------LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHHH------TTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------hCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998874 357899999999999999999999999999999999999999999999999999998875
No 2
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=59.12 E-value=14 Score=23.92 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=22.7
Q ss_pred hhhhhhHHHHHHHHHHhcC-hhHHHHHHHHHHHhh
Q 024175 93 SFWKRSLEFLHQLLEELLA-PPTLAAIVGFIFGAV 126 (271)
Q Consensus 93 ~~~~~~~~~~~~~lk~l~n-P~iiA~ilGlii~~~ 126 (271)
++|+|++++++..+...-+ |--++.+..-+=++.
T Consensus 2 ~mWErVk~ilks~l~~aS~iPGPVG~~asGi~gl~ 36 (44)
T 1nov_D 2 TFWERVRSILKSGLNFASTIPGPVGVAATGIKGII 36 (44)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchhHHHHhHHHHH
Confidence 6899999988887765554 666665554444433
No 3
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=52.57 E-value=20 Score=23.16 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=20.1
Q ss_pred hhhhhhHHHHHHHHHHhcC-hhHHHHHHHHHH
Q 024175 93 SFWKRSLEFLHQLLEELLA-PPTLAAIVGFIF 123 (271)
Q Consensus 93 ~~~~~~~~~~~~~lk~l~n-P~iiA~ilGlii 123 (271)
++|+|++++++..+..+-+ |--++.+..-+=
T Consensus 2 ~~WErVk~ilks~l~a~S~iPGPVG~~asGi~ 33 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAAASNIPGPIGVAASGIS 33 (44)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchhHHHHhHH
Confidence 6899999988877655444 555555444333
No 4
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=19.75 E-value=18 Score=22.98 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=10.4
Q ss_pred hhhhhhHHHHHHHH
Q 024175 93 SFWKRSLEFLHQLL 106 (271)
Q Consensus 93 ~~~~~~~~~~~~~l 106 (271)
++|+|++++++..+
T Consensus 2 ~mWErVk~ilks~l 15 (40)
T 1f8v_D 2 KFWEGVLRVLNQIS 15 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHH
Confidence 68999987766553
No 5
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=10.72 E-value=6.8e+02 Score=20.63 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=40.1
Q ss_pred cChhHHHHHHHHHHHhhhhhhHhhhcCCCchhhHHHHHHHhcCchhHHHHHHHhHhcccccccCCCchhH---HHHHHHH
Q 024175 110 LAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLI---IIAVVCV 186 (271)
Q Consensus 110 ~nP~iiA~ilGlii~~~~~lr~~l~~~~~pL~~I~~al~~lG~aaiPl~lliLG~~L~~~~~~~~~~~~~---i~~iv~v 186 (271)
.-=+..|+++|++.+++.. +.++...+.+++..++++ ++.+.+.+.+-+.+. ++.+..... ....++.
T Consensus 60 ~~Gp~~G~~~g~i~gll~~----i~g~~~~~~p~q~lldy~----laf~~~GlaG~f~~~-~~~~~~~~~~lg~~ig~~~ 130 (192)
T 3rlb_A 60 RRGLTAGLVGGLIWGILSM----ITGHAYILSLSQAFLEYL----VAPVSLGIAGLFRQK-TAPLKLAPVLLGTFVAVLL 130 (192)
T ss_dssp HHCHHHHHHHHHHHHHHHH----HTTCSCCSSHHHHHHHHT----HHHHHGGGGGGGCCC-SSSCCHHHHHHHHHHHHHH
T ss_pred HHChHHHHHHHHHHHHHHH----HhCCccccchHHHHHHHH----HHHHHHHHHHhheec-cccccHHHHHHHHHHHHHH
Confidence 3344667777777777764 334333346676666654 344444444444432 111111112 3345677
Q ss_pred HHHHHHHHHH
Q 024175 187 RYIALPFIGV 196 (271)
Q Consensus 187 RlillPli~~ 196 (271)
|++..=+.++
T Consensus 131 r~~~~~isgv 140 (192)
T 3rlb_A 131 KYFFHFIAGI 140 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776655555
No 6
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=8.35 E-value=2.7e+02 Score=21.42 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 024175 192 PFIGVWVVKAAAALGFLPS 210 (271)
Q Consensus 192 Pli~~~iv~~~~~~g~l~~ 210 (271)
|++.+.+.+++.++||+.+
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T 1tm9_A 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 5566667777889999874
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=6.17 E-value=1.5e+03 Score=20.84 Aligned_cols=49 Identities=16% Similarity=0.010 Sum_probs=32.3
Q ss_pred HhhccchHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024175 220 VQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWI 269 (271)
Q Consensus 220 l~~a~P~A~n~~i~Aq~~g~~~~~~S~il~~syllSivtlplw~~lf~~l 269 (271)
+..|.=.+..+.++.+++|.|+..+|.- +.||+.-++.+-+...+-.++
T Consensus 421 ~~~a~~~g~~~p~~~~~~~~DPa~~s~p-~itt~~D~~g~~~~~~~a~~~ 469 (473)
T 2zy9_A 421 VFFANLVGAMLPFLLRRLGVDPALVSNP-LVATLSDVTGLLIYLSVARLL 469 (473)
T ss_dssp HHHHHHHHTTHHHHHHHHTCCGGGSCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556678889999998666544 678887777766555554443
No 8
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=5.78 E-value=6.8e+02 Score=19.14 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=31.8
Q ss_pred chhhhhhhhhhHHHHHHHHHHh---cChhHHHHHHHHHHHhhh
Q 024175 88 QTRKESFWKRSLEFLHQLLEEL---LAPPTLAAIVGFIFGAVV 127 (271)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~lk~l---~nP~iiA~ilGlii~~~~ 127 (271)
++.|..+|..+.+++++....- .+|-.++.+.-++.-..-
T Consensus 23 ~rLKaal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~ 65 (113)
T 4dra_A 23 QRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCE 65 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHH
Confidence 4567888888888888876665 899999999998886553
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=4.19 E-value=1e+03 Score=17.89 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=6.0
Q ss_pred HHHhcChhHHHHHHHH
Q 024175 106 LEELLAPPTLAAIVGF 121 (271)
Q Consensus 106 lk~l~nP~iiA~ilGl 121 (271)
+|+++--.++++++-+
T Consensus 93 wkn~K~~iii~~iv~i 108 (119)
T 2kog_A 93 WKNLKMMIILGVICAI 108 (119)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3443333333333333
No 10
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=3.86 E-value=4.7e+02 Score=16.25 Aligned_cols=8 Identities=63% Similarity=1.360 Sum_probs=4.4
Q ss_pred cCCCCCCh
Q 024175 205 LGFLPSDP 212 (271)
Q Consensus 205 ~g~l~~dp 212 (271)
+|+++.||
T Consensus 21 FGfLsnDP 28 (38)
T 3arc_I 21 FGFLSGDP 28 (38)
T ss_dssp HHHHTTGG
T ss_pred ccccCCCC
Confidence 35555565
Done!