Query 024175
Match_columns 271
No_of_seqs 176 out of 1000
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 03:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024175.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024175hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 8.4 1.5E+02 0.011 16.3 2.8 26 107-132 5-30 (34)
2 d1tm9a_ a.225.1.1 (A:) Hypothe 8.4 1.2E+02 0.0091 21.4 3.0 19 192-210 94-112 (137)
3 d1unld_ a.74.1.1 (D:) CDK5 act 3.8 2.4E+02 0.017 20.8 2.2 16 90-105 109-124 (150)
4 d2fh5a1 d.110.4.4 (A:1-129) Si 3.5 1.6E+02 0.012 21.1 1.0 9 4-12 11-19 (129)
5 d1zoqc1 a.153.1.1 (C:2065-2111 3.4 3.5E+02 0.025 15.8 2.3 16 104-119 21-37 (47)
6 d2hiqa1 d.58.4.12 (A:9-104) Hy 3.1 1.7E+02 0.013 20.1 0.8 8 3-10 49-56 (96)
7 d1aa7a_ a.95.1.1 (A:) Influenz 2.9 5.8E+02 0.042 18.4 3.7 55 103-168 43-101 (158)
8 d1q90g_ f.23.26.1 (G:) PetG su 2.8 3.3E+02 0.024 14.5 1.6 9 119-127 7-15 (30)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 2.7 6.4E+02 0.047 19.0 4.2 34 214-247 154-188 (290)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 2.7 4.7E+02 0.034 13.7 2.1 13 114-126 9-21 (30)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.44 E-value=1.5e+02 Score=16.33 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHhcChhHHHHHHHHHHHhhhhhhHh
Q 024175 107 EELLAPPTLAAIVGFIFGAVVWLRNL 132 (271)
Q Consensus 107 k~l~nP~iiA~ilGlii~~~~~lr~~ 132 (271)
|+++|=...+.+-|..++.+-|+-+-
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvky 30 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKY 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhh
Confidence 34566678999999999887654443
No 2
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=8.35 E-value=1.2e+02 Score=21.42 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 024175 192 PFIGVWVVKAAAALGFLPS 210 (271)
Q Consensus 192 Pli~~~iv~~~~~~g~l~~ 210 (271)
|++.+.+.+++.++||+.+
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 5566667777889999874
No 3
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.82 E-value=2.4e+02 Score=20.77 Aligned_cols=16 Identities=38% Similarity=0.868 Sum_probs=12.3
Q ss_pred hhhhhhhhhHHHHHHH
Q 024175 90 RKESFWKRSLEFLHQL 105 (271)
Q Consensus 90 ~~~~~~~~~~~~~~~~ 105 (271)
.|+.+|+|+-.++.+.
T Consensus 109 ~k~~FWdRCl~Iin~~ 124 (150)
T d1unld_ 109 CKEAFWDRCLSVINLM 124 (150)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4579999988877654
No 4
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.49 E-value=1.6e+02 Score=21.09 Aligned_cols=9 Identities=33% Similarity=1.394 Sum_probs=7.7
Q ss_pred cceeeeeeE
Q 024175 4 GGFFIWSYS 12 (271)
Q Consensus 4 g~~~~wt~~ 12 (271)
|||-+|+|.
T Consensus 11 GGiVLW~~~ 19 (129)
T d2fh5a1 11 GGLVLWCFQ 19 (129)
T ss_dssp TSBEEEEEB
T ss_pred CeEEEEeec
Confidence 899999863
No 5
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.38 E-value=3.5e+02 Score=15.83 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=10.7
Q ss_pred HHHHHhc-ChhHHHHHH
Q 024175 104 QLLEELL-APPTLAAIV 119 (271)
Q Consensus 104 ~~lk~l~-nP~iiA~il 119 (271)
+++..++ ||.+.|+++
T Consensus 21 QvL~ILksNP~lmaaFI 37 (47)
T d1zoqc1 21 QVLNILKSNPQLMAAFI 37 (47)
T ss_dssp HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHH
Confidence 4455554 799888765
No 6
>d2hiqa1 d.58.4.12 (A:9-104) Hypothetical protein YdhR {Escherichia coli [TaxId: 562]}
Probab=3.13 E-value=1.7e+02 Score=20.07 Aligned_cols=8 Identities=25% Similarity=1.082 Sum_probs=5.9
Q ss_pred ccceeeee
Q 024175 3 LGGFFIWS 10 (271)
Q Consensus 3 ~g~~~~wt 10 (271)
.||||+|.
T Consensus 49 ~GGvY~f~ 56 (96)
T d2hiqa1 49 AGGIYLFT 56 (96)
T ss_dssp EEEEEEES
T ss_pred EeEEEEEC
Confidence 47888884
No 7
>d1aa7a_ a.95.1.1 (A:) Influenza virus matrix protein M1 {Influenza A virus [TaxId: 11320]}
Probab=2.88 E-value=5.8e+02 Score=18.38 Aligned_cols=55 Identities=25% Similarity=0.366 Sum_probs=33.0
Q ss_pred HHHHHH--hcChhHHHHHHHHHHHhhhhhhHhhhcCCC-ch-hhHHHHHHHhcCchhHHHHHHHhHhccc
Q 024175 103 HQLLEE--LLAPPTLAAIVGFIFGAVVWLRNLIIGDSA-PL-RVIQDSIEILGDGTIPCITLILGGNLIQ 168 (271)
Q Consensus 103 ~~~lk~--l~nP~iiA~ilGlii~~~~~lr~~l~~~~~-pL-~~I~~al~~lG~aaiPl~lliLG~~L~~ 168 (271)
..++|. +.+|..-| ++|+++.++.|- +.. .= ++++++++-.|+-.. +-=|..|++
T Consensus 43 mEWlKtr~~Ls~ltK~-ilG~~~~~~~Ps------er~lq~RRFv~naLngngdp~~----m~k~v~l~r 101 (158)
T d1aa7a_ 43 MEWLKTRPILSPLTKG-ILGFVFTLTVPS------ERGLQRRRFVQNALNGNGDPNN----MDKAVKLYR 101 (158)
T ss_dssp HHHHHTCSSSCHHHHH-HHHHHHHHHSSC------CTTCCCCHHHHHHTSGGGCHHH----HHHHHHHHH
T ss_pred HHHHhcCcccchHHhh-hhheEEEEeccc------hhhhHHhHhhhccccCCCCchh----HHHHHHHHH
Confidence 344543 67777766 667777766541 111 11 799999988887542 344555554
No 8
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.84 E-value=3.3e+02 Score=14.50 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=4.1
Q ss_pred HHHHHHhhh
Q 024175 119 VGFIFGAVV 127 (271)
Q Consensus 119 lGlii~~~~ 127 (271)
.|+++|++|
T Consensus 7 ~GivlGlip 15 (30)
T d1q90g_ 7 CGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHhhHH
Confidence 344444444
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=2.71 E-value=6.4e+02 Score=18.96 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=18.7
Q ss_pred HHHHHHHhhccchHHHHHHHH-hHcCCChhHHHHH
Q 024175 214 YHYVLMVQFTLPPAMNIGTMT-QLFDVAQEECSVL 247 (271)
Q Consensus 214 ~~~Vlll~~a~P~A~n~~i~A-q~~g~~~~~~S~i 247 (271)
...+......+|-++....-+ ++.+.+.+|+|+.
T Consensus 154 ~~ii~~~~~~~pf~~~~~~~~l~~i~~~l~EAA~~ 188 (290)
T d2r6gg1 154 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAAL 188 (290)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHH
T ss_pred hhhhhhcccceeeeeeccchhhhcchhhhhhhHhh
Confidence 334444556778777644333 3344455677765
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.67 E-value=4.7e+02 Score=13.67 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhh
Q 024175 114 TLAAIVGFIFGAV 126 (271)
Q Consensus 114 iiA~ilGlii~~~ 126 (271)
+.|+++|+.+..+
T Consensus 9 ifac~i~lfffai 21 (30)
T d2axtt1 9 IFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788888877654
Done!