Query 024176
Match_columns 271
No_of_seqs 137 out of 1015
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 6.3E-55 1.4E-59 387.9 25.4 220 24-256 1-236 (236)
2 PF00139 Lectin_legB: Legume l 100.0 2.7E-54 5.8E-59 383.6 18.9 217 23-253 1-236 (236)
3 cd01951 lectin_L-type legume l 100.0 5.5E-45 1.2E-49 320.7 24.7 199 39-254 14-223 (223)
4 cd07308 lectin_leg-like legume 100.0 2.7E-28 5.8E-33 214.3 24.7 189 39-254 20-217 (218)
5 cd06901 lectin_VIP36_VIPL VIP3 99.9 8.6E-26 1.9E-30 202.0 25.0 195 39-257 20-225 (248)
6 cd06902 lectin_ERGIC-53_ERGL E 99.9 9.4E-26 2E-30 199.2 24.4 194 38-254 21-223 (225)
7 cd06903 lectin_EMP46_EMP47 EMP 99.9 5.6E-22 1.2E-26 173.9 22.5 183 39-254 21-213 (215)
8 PF03388 Lectin_leg-like: Legu 99.9 8.7E-22 1.9E-26 174.5 22.8 191 39-253 22-226 (229)
9 KOG3838 Mannose lectin ERGIC-5 99.8 1.1E-19 2.5E-24 167.1 19.6 229 2-254 10-254 (497)
10 KOG3839 Lectin VIP36, involved 99.8 2.3E-18 4.9E-23 156.1 15.2 191 39-253 72-273 (351)
11 cd06900 lectin_VcfQ VcfQ bacte 99.4 7E-11 1.5E-15 104.0 21.2 193 49-253 29-254 (255)
12 cd00110 LamG Laminin G domain; 89.7 8.7 0.00019 30.4 13.4 93 74-206 8-100 (151)
13 KOG3514 Neurexin III-alpha [Si 89.6 2.8 6.1E-05 44.7 10.2 114 39-196 804-932 (1591)
14 smart00282 LamG Laminin G doma 79.1 28 0.00061 27.1 9.8 26 179-206 57-82 (135)
15 KOG3514 Neurexin III-alpha [Si 50.5 2.3E+02 0.0049 31.2 11.6 77 135-232 486-565 (1591)
16 PF12248 Methyltransf_FA: Farn 30.9 2.1E+02 0.0046 21.6 6.3 46 181-234 49-94 (102)
17 smart00560 LamGL LamG-like jel 29.1 67 0.0014 25.4 3.3 23 184-206 61-83 (133)
18 PF07472 PA-IIL: Fucose-bindin 28.6 2.9E+02 0.0063 21.7 7.0 54 193-251 50-106 (107)
19 smart00159 PTX Pentraxin / C-r 26.1 82 0.0018 27.1 3.6 28 179-206 85-112 (206)
20 PF09224 DUF1961: Domain of un 23.1 2E+02 0.0042 25.5 5.2 65 39-116 18-84 (218)
21 cd00152 PTX Pentraxins are pla 22.6 98 0.0021 26.4 3.4 27 181-207 87-113 (201)
22 PF02210 Laminin_G_2: Laminin 20.3 1.7E+02 0.0036 21.8 4.0 26 179-206 49-74 (128)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=6.3e-55 Score=387.87 Aligned_cols=220 Identities=44% Similarity=0.724 Sum_probs=195.3
Q ss_pred eeEEeCCCCCCCCCCCCeEEecceEEe-CCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecC------CCeeEEEEEE
Q 024176 24 VSFSFSSFNPKSCSDGSLICMGAVTPS-YGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIR 96 (271)
Q Consensus 24 ~~F~f~~F~~~~~~~~~l~l~G~A~~~-~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~------~sFst~F~F~ 96 (271)
++|+|++|.... .+|.|+|+|.+. ++.||||++.. ..+++|||||++||++|+ ++|+|+|+|+
T Consensus 1 ~~f~f~~f~~~~---~~l~l~G~A~~~~~~~i~LT~~~~-------~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~ 70 (236)
T cd06899 1 LSFNFNGFSSDQ---SNLTLQGDATISSNGALQLTNDTS-------PASSVGRALYSKPVRLWDSTTGKVASFSTSFSFS 70 (236)
T ss_pred CceecCCCCCCC---CCEEEecceEcCCCCeEEecCCCC-------CCcceEEEEeCCCEEeecCCCCCceeEEEEEEEE
Confidence 479999998743 589999999998 89999999861 258999999999999997 5899999999
Q ss_pred EecCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCC-------CCceEEEEEeccCCCCCCCCCCCceEEecCCCCcc
Q 024176 97 ISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSN-------GVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSN 169 (271)
Q Consensus 97 I~~~~~~~~~gdGlAF~l~~~~~~~~~g~~G~~lGl~~-------~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~ns~~s~ 169 (271)
|.+. ....+||||||||+|.+.. +.+..|++||+.+ .++.||||||||+|.+++||+.+||||++|++.|.
T Consensus 71 i~~~-~~~~~gdGlAF~i~~~~~~-~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~ 148 (236)
T cd06899 71 ITPP-NPSLGGDGLAFFLAPTDSL-PPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSV 148 (236)
T ss_pred EEcC-CCCCCCCeEEEEEecCCCC-CCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccc
Confidence 9986 4567899999999998743 3468899999986 45799999999999988999999999999999888
Q ss_pred ccccCCCCCCcCCCCCcEEEEEEEeCcceEEEEEEEeCC--CCCceEEEEeecCCCCCCCceEEEEEeecCCCCccceEE
Q 024176 170 PAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAG--NPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQV 247 (271)
Q Consensus 170 ~~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~--~p~~~~ls~~vdL~~~l~~~~yvGFSASTG~~~~~~h~I 247 (271)
.+..+......|.+|+.++|||+|++.+++|+|+|.+.. +|..|+++..+||+.+|+++|||||||+|| +..|.|+|
T Consensus 149 ~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG-~~~~~h~i 227 (236)
T cd06899 149 KAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTG-LLTELHYI 227 (236)
T ss_pred eeeccccccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcC-CCcceEEE
Confidence 777775444568899999999999999999999999864 688999999999999999999999999999 99999999
Q ss_pred EEEEEEecC
Q 024176 248 LDWTFTTFP 256 (271)
Q Consensus 248 ~sWsf~~~~ 256 (271)
++|+|++++
T Consensus 228 ~sWsF~s~~ 236 (236)
T cd06899 228 LSWSFSSNG 236 (236)
T ss_pred EEEEEEcCC
Confidence 999999763
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=2.7e-54 Score=383.61 Aligned_cols=217 Identities=40% Similarity=0.663 Sum_probs=188.2
Q ss_pred CeeEEeCCCCCCCCCCCCeEEecceEE-eCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecC------CCeeEEEEE
Q 024176 23 PVSFSFSSFNPKSCSDGSLICMGAVTP-SYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTI 95 (271)
Q Consensus 23 ~~~F~f~~F~~~~~~~~~l~l~G~A~~-~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~------~sFst~F~F 95 (271)
.++|+|++|.. . .+|+|.|+|.+ .+++||||++.. .+++|||||++||+||| ++|+|+|+|
T Consensus 1 ~~~F~~~~F~~-~---~~~~l~G~A~~~~~~~l~LT~~~~--------~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f 68 (236)
T PF00139_consen 1 SVSFSFPSFSN-S---SNLTLNGDASISSNGSLQLTPDST--------NNQAGRAWYNNPIQLWDSTTGNVASFSTSFSF 68 (236)
T ss_dssp EEEEEESSBTT-G---TTEEEEETEEEETTSEEESSTBET--------SSEEEEEEESSEEESBETTTTEBEEEEEEEEE
T ss_pred CceEEcCCCCC-C---CceEEEeeEEeccCCeEEcCCCCC--------CCcEEEEEECCcEEEeCCCCcceeeeeeEEEE
Confidence 37899999932 2 58999999998 689999998871 38999999999999987 789999999
Q ss_pred EEecCC-CCCCCCCceEEEEecCCCCCCCCCCCCCCCCCC-------CCceEEEEEeccCCCCCCCCCCCceEEecCCCC
Q 024176 96 RISPYP-NTTDSADGMTFVFATDTSPPTENSAGGNLGLSN-------GVSQLAVELDTYKNDYWSDPDANHMGIDIANLT 167 (271)
Q Consensus 96 ~I~~~~-~~~~~gdGlAF~l~~~~~~~~~g~~G~~lGl~~-------~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~ns~~ 167 (271)
+|.... ....+||||||+|+|++ ..+.++.|++||+.+ +++.||||||||+|++++||+.+||||++|++.
T Consensus 69 ~i~~~~~~~~~~~dGlAFvi~~~~-~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~ 147 (236)
T PF00139_consen 69 SITNGPGSSNNGGDGLAFVIQPDP-NLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVV 147 (236)
T ss_dssp EEEESSSSSSS-BEEEEEEEEETT-SSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSS
T ss_pred EEeccCCCCccCCCceEEEEecCc-ccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCc
Confidence 996421 45678999999999998 556667999999986 578999999999999999999999999999999
Q ss_pred ccccccCC---CCCCcCCCCCcEEEEEEEeCcceEEEEEEEeC-CCCCceEEEEeecCCCCCCCceEEEEEeecCCCCcc
Q 024176 168 SNPAKSLD---SSGIDLKSGRPIQVHIYYDGWTKILYVYVAYA-GNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSE 243 (271)
Q Consensus 168 s~~~~~~~---~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~-~~p~~~~ls~~vdL~~~l~~~~yvGFSASTG~~~~~ 243 (271)
+.++.++. .....+.+|+.++|||+||+.+++|+|+|+.. .+|..++++..+||+.+++++|||||||||| ...|
T Consensus 148 s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG-~~~~ 226 (236)
T PF00139_consen 148 SNKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNSSKPSSPVLSVNVDLSAVLPEQVYVGFSASTG-GSYQ 226 (236)
T ss_dssp ESEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETTTTSEEEEEEEE--HHHHSCSEEEEEEEEEES-SSSE
T ss_pred ccccccccccccccccccCCcEEEEEEEEcCCccEEEEEEecccCCCcceeEEEEEchHHhcCCCcEEEEEeecC-CCcc
Confidence 88775442 12467899999999999999999999999997 6889999999999999999999999999999 9999
Q ss_pred ceEEEEEEEE
Q 024176 244 SHQVLDWTFT 253 (271)
Q Consensus 244 ~h~I~sWsf~ 253 (271)
.|+|++|+|+
T Consensus 227 ~h~I~sW~F~ 236 (236)
T PF00139_consen 227 THDILSWSFS 236 (236)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEeC
Confidence 9999999996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=5.5e-45 Score=320.74 Aligned_cols=199 Identities=34% Similarity=0.515 Sum_probs=172.2
Q ss_pred CCeEEecceEEe--CCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEec
Q 024176 39 GSLICMGAVTPS--YGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFAT 116 (271)
Q Consensus 39 ~~l~l~G~A~~~--~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~ 116 (271)
.+|.+.|+|.+. ++.||||++. .+++|+|||++||+++ ++|+|+|+|+|... ...+||||||||++
T Consensus 14 ~~~~~~G~A~~~~~~~~l~Lt~~~---------~~~~G~~~~~~~i~~~-~~F~~~F~f~i~~~--~~~~gdG~aF~l~~ 81 (223)
T cd01951 14 SNWQLNGSATLTTDSGVLRLTPDT---------GNQAGSAWYKTPIDLS-KDFTTTFKFYLGTK--GTNGADGIAFVLQN 81 (223)
T ss_pred hhcEEcccEEecCCCCEEEECCCC---------CCcEEEEEECCcEecc-CCEEEEEEEEEeCC--CCCCCCcEEEEEec
Confidence 479999999998 7899999987 6899999999999998 69999999999985 36789999999999
Q ss_pred CCCCCCCCCCC--CCCCCCCCCceEEEEEeccCCCCCCCCCCCceEEecCCCCcc-------ccccCCCCCCcCCCCCcE
Q 024176 117 DTSPPTENSAG--GNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSN-------PAKSLDSSGIDLKSGRPI 187 (271)
Q Consensus 117 ~~~~~~~g~~G--~~lGl~~~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~ns~~s~-------~~~~~~~~~~~l~~G~~~ 187 (271)
.+.. +.+..| ++||+.+..+.+|||||||+|.++.||+.+||||++|+..+. ....+ .....+|+.+
T Consensus 82 ~~~~-~~~~~g~~~~lG~~~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~---~~~~~~g~~~ 157 (223)
T cd01951 82 DPAG-ALGGGGGGGGLGYGGIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASL---PNGTGLGNEH 157 (223)
T ss_pred CCCC-ccccCCCCCccCccccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeC---CCccCCCCEE
Confidence 8732 334444 899999999999999999999887799999999999998643 11112 1222239999
Q ss_pred EEEEEEeCcceEEEEEEEeCCCCCceEEEEeecCCCCCCCceEEEEEeecCCCCccceEEEEEEEEe
Q 024176 188 QVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTT 254 (271)
Q Consensus 188 ~v~I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~l~~~~yvGFSASTG~~~~~~h~I~sWsf~~ 254 (271)
+|||+|++.+++|+|+|+....|..++++..+||..+++++|||||||||| ...|.|+|++|+|..
T Consensus 158 ~v~I~Y~~~~~~L~v~l~~~~~~~~~~l~~~~~l~~~~~~~~yvGFTAsTG-~~~~~h~V~~wsf~~ 223 (223)
T cd01951 158 TVRITYDPTTNTLTVYLDNGSTLTSLDITIPVDLIQLGPTKAYFGFTASTG-GLTNLHDILNWSFTS 223 (223)
T ss_pred EEEEEEeCCCCEEEEEECCCCccccccEEEeeeecccCCCcEEEEEEcccC-CCcceeEEEEEEecC
Confidence 999999999999999999865577899999999999999999999999999 999999999999963
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.97 E-value=2.7e-28 Score=214.26 Aligned_cols=189 Identities=24% Similarity=0.349 Sum_probs=143.7
Q ss_pred CCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecCC
Q 024176 39 GSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDT 118 (271)
Q Consensus 39 ~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~ 118 (271)
.+|.+.|+|.+.++.|+||++. .++.|++||+.|+++ .+|+++|+|+|.+. ...+||||||||+++.
T Consensus 20 ~~w~~~G~a~~~~~~i~LT~~~---------~~~~G~~~~~~pi~~--~~F~~~f~F~i~~~--~~~~gdG~af~~~~~~ 86 (218)
T cd07308 20 GNWTVGGSTVITKNYIRLTPDV---------PSQSGSLWSRVPIPA--KDFEIEVEFSIHGG--SGLGGDGFAFWYTEEP 86 (218)
T ss_pred CCeEEcCCeEEeCCEEEeCCCC---------CCCEeEEEeCCCccC--CCEEEEEEEEEeCC--CCCCCCEEEEEEECCC
Confidence 5899999999999999999987 689999999999999 48999999999874 3678999999999965
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeccCCCCCCCCCCCceEEecCCCC-ccc------cccCCCCCCcCCC-CCcEEEE
Q 024176 119 SPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLT-SNP------AKSLDSSGIDLKS-GRPIQVH 190 (271)
Q Consensus 119 ~~~~~g~~G~~lGl~~~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~ns~~-s~~------~~~~~~~~~~l~~-G~~~~v~ 190 (271)
...|..+|..+..+++||||||+.|. +...++|.+.+|... +.. ......+....++ +++.++|
T Consensus 87 -----~~~g~~~G~~~~~~Glai~fdt~~n~---~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~~~~~~~~~~~ 158 (218)
T cd07308 87 -----GSDGPLFGGPDKFKGLAIFFDTYDND---GKGFPSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSNAPTTLR 158 (218)
T ss_pred -----CCCCcccccCCCCCEEEEEEEcCCCC---CCCCCeEEEEEeCCCceecccCCCccccccceeEecccCCCCeEEE
Confidence 13567899998999999999999985 334456776665332 211 1111222233333 6899999
Q ss_pred EEEeCcceEEEEEEEeCCCCCceEEEEeecCCC-CCCCceEEEEEeecCCCCccceEEEEEEEEe
Q 024176 191 IYYDGWTKILYVYVAYAGNPLQKLIERPIPLSE-TIPSSVYVGFTASTGPDFSESHQVLDWTFTT 254 (271)
Q Consensus 191 I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~-~l~~~~yvGFSASTG~~~~~~h~I~sWsf~~ 254 (271)
|.|+ .+.|.|.+.... +.....+. ++.. .+++.+|+||||+|| ...+.|+|++|.+..
T Consensus 159 I~y~--~~~l~v~i~~~~-~~~~~~c~--~~~~~~l~~~~y~G~sA~tg-~~~d~~dIls~~~~~ 217 (218)
T cd07308 159 ISYL--NNTLKVDITYSE-GNNWKECF--TVEDVILPSQGYFGFSAQTG-DLSDNHDILSVHTYE 217 (218)
T ss_pred EEEE--CCEEEEEEeCCC-CCCccEEE--EcCCcccCCCCEEEEEeccC-CCcCcEEEEEEEeee
Confidence 9999 568999997532 11222333 3333 467899999999999 999999999998753
No 5
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.95 E-value=8.6e-26 Score=201.99 Aligned_cols=195 Identities=18% Similarity=0.268 Sum_probs=144.6
Q ss_pred CCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecCC
Q 024176 39 GSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDT 118 (271)
Q Consensus 39 ~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~ 118 (271)
.+|.+.|+|.+.++.||||++. +++.|++||+.|+++ .+|+++|+|+|.+. ....+|||||||++...
T Consensus 20 ~~w~~~G~a~v~~~~IrLTp~~---------~~~~G~~w~~~p~~~--~~F~~~f~F~I~~~-~~~~~GdGlAfw~t~~~ 87 (248)
T cd06901 20 PLWDFLGSTMVTSQYIRLTPDH---------QSKQGSIWNRVPCYL--RDWEMHVHFKVHGS-GKNLFGDGFAIWYTKER 87 (248)
T ss_pred CCEEEcceEEEcCCeEEECCCC---------CCCEEEEeccCCccC--CCEEEEEEEEEeCC-CCCCCCCEEEEEEEcCC
Confidence 6899999999998999999987 468999999999999 48999999999986 45678999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeccCCCCC-CCCCCCceEEecCCC-Ccccc------ccCCCCCCcCC-CCCcEEE
Q 024176 119 SPPTENSAGGNLGLSNGVSQLAVELDTYKNDYW-SDPDANHMGIDIANL-TSNPA------KSLDSSGIDLK-SGRPIQV 189 (271)
Q Consensus 119 ~~~~~g~~G~~lGl~~~~~~vAVEFDT~~N~~~-~Dp~~nHvgi~~ns~-~s~~~------~~~~~~~~~l~-~G~~~~v 189 (271)
...|..+|..+..+++||.||||.|..- .....+.|.+.+|.. ..... ..++.+....+ .+.+.++
T Consensus 88 -----~~~G~~fG~~~~f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~~rn~~~~t~~ 162 (248)
T cd06901 88 -----MQPGPVFGSKDNFHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDHDRDGTHTELAGCSAPFRNKDHDTFV 162 (248)
T ss_pred -----CccCcccccCCCCceEEEEEECCCCCCCcccCCCceEEEEEcCCCeeecccCCCchhhcCceeeeccCCCCCeEE
Confidence 2457789999999999999999999531 012334465555432 22111 11222223333 3566899
Q ss_pred EEEEeCcceEEEEEEEeCCCC-CceEEEEeecCCCC-CCCceEEEEEeecCCCCccceEEEEEEEEecCC
Q 024176 190 HIYYDGWTKILYVYVAYAGNP-LQKLIERPIPLSET-IPSSVYVGFTASTGPDFSESHQVLDWTFTTFPL 257 (271)
Q Consensus 190 ~I~Yd~~~~~L~V~l~~~~~p-~~~~ls~~vdL~~~-l~~~~yvGFSASTG~~~~~~h~I~sWsf~~~~~ 257 (271)
+|.|... .|.|.++...+. +..|+ +...+ ||...|+||||+|| ...+.|+|++..+..-..
T Consensus 163 rI~Y~~~--~l~v~vd~~~~~~w~~Cf----~~~~v~LP~~~yfGiSA~Tg-~~sd~hdIlsv~~~~l~~ 225 (248)
T cd06901 163 AIRYSKG--RLTVMTDIDGKNEWKECF----DVTGVRLPTGYYFGASAATG-DLSDNHDIISMKLYELDV 225 (248)
T ss_pred EEEEECC--eEEEEEecCCCCceeeeE----EeCCeecCCCCEEEEEecCC-CCCCcEEEEEEEEecCcc
Confidence 9999975 588888764432 23343 33443 68889999999999 999999999988876533
No 6
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.95 E-value=9.4e-26 Score=199.16 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=148.2
Q ss_pred CCCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecC
Q 024176 38 DGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATD 117 (271)
Q Consensus 38 ~~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~ 117 (271)
..+|.+.|+|.+.++.||||++. +++.|.+|.+.|++. .+|+++|+|+|++. ...+|||||||++..
T Consensus 21 i~~W~~~G~t~~~~~~IrLTp~~---------~~~~G~iw~~~~~~~--~~w~ie~~Fri~g~--~~~~gdG~a~W~t~~ 87 (225)
T cd06902 21 VPFWSHGGDAIASLEQVRLTPSL---------RSKKGSVWTKNPFSF--ENWEVEVTFRVTGR--GRIGADGLAIWYTKE 87 (225)
T ss_pred CCceEecccEEecCCEEEECCCC---------CCCEEEEeeCCCcCC--CCEEEEEEEEEecC--CCCCCCEEEEEEECC
Confidence 36899999999999999999987 689999999999997 48999999999975 346789999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEeccCCCCCCCCCCCceEEecCCCC-ccccc------cCCCCCCcCCC-CCcEEE
Q 024176 118 TSPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLT-SNPAK------SLDSSGIDLKS-GRPIQV 189 (271)
Q Consensus 118 ~~~~~~g~~G~~lGl~~~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~ns~~-s~~~~------~~~~~~~~l~~-G~~~~v 189 (271)
. +..|+.+|..+..+++||.|||+.|.+ ....+.|.+..|... ..... .++.+....++ ..+.++
T Consensus 88 ~-----~~~G~~~G~~~~f~Gl~I~~Dt~~n~~--~~~~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~rn~~~p~~~ 160 (225)
T cd06902 88 R-----GEEGPVFGSSDKWNGVGIFFDSFDNDG--KKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVRA 160 (225)
T ss_pred C-----CCCCCccCCCCcccEEEEEEECCCCCC--CCCCcEEEEEECCCCeeccccCCCcccccceEEEeccCCCCCeEE
Confidence 5 246788999999999999999998843 233457766665432 22111 11122233333 578999
Q ss_pred EEEEeCcceEEEEEEEeCCCCCceEEEEeecCCCC-CCCceEEEEEeecCCCCccceEEEEEEEEe
Q 024176 190 HIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSET-IPSSVYVGFTASTGPDFSESHQVLDWTFTT 254 (271)
Q Consensus 190 ~I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~-l~~~~yvGFSASTG~~~~~~h~I~sWsf~~ 254 (271)
+|.|... +|+|.++...++....+..++++.++ ||...|+||||+|| ...+.|+|++|.+.+
T Consensus 161 rI~Y~~~--~l~V~~d~~~~~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg-~l~d~hDIls~~~~s 223 (225)
T cd06902 161 KITYYQN--VLTVSINNGFTPNKDDYELCTRVENMVLPPNGYFGVSAATG-GLADDHDVLSFLTFS 223 (225)
T ss_pred EEEEECC--eEEEEEeCCcCCCCCcccEEEecCCeeCCCCCEEEEEecCC-CCCCcEeEEEEEEec
Confidence 9999984 69999885433333334555555554 78889999999999 999999999999873
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.90 E-value=5.6e-22 Score=173.92 Aligned_cols=183 Identities=17% Similarity=0.236 Sum_probs=137.8
Q ss_pred CCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecCC
Q 024176 39 GSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDT 118 (271)
Q Consensus 39 ~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~ 118 (271)
.+|.+.|+|.+.++.||||++ + ++.|.+|.+.|+++.+ +|+++|+|+|+++ ...+|||||||++..+
T Consensus 21 ~~W~~~G~t~v~~~~IrLTp~-~---------s~~G~iWs~~pl~~~~-~w~ie~~Fri~G~--~~~~gdGla~W~t~~~ 87 (215)
T cd06903 21 PNWQTSGNPKLESGRIILTPP-G---------NQRGSLWLKKPLSLKD-EWTIEWTFRSTGP--EGRSGGGLNFWLVKDG 87 (215)
T ss_pred CCeEEcCcEEeeCCeEEECCC-C---------CceEeEeeCCcCCCCC-CEEEEEEEEeccc--CCcCCCEEEEEEECCC
Confidence 689999999999999999997 3 8899999999999962 8999999999985 3478999999999875
Q ss_pred CCCCCCCCC-CCCCCCCCCceEEEEEeccCCCCCCCCCCCceEEecC-CCCcccccc-----CCCCCCcC-CCCCcEEEE
Q 024176 119 SPPTENSAG-GNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIA-NLTSNPAKS-----LDSSGIDL-KSGRPIQVH 190 (271)
Q Consensus 119 ~~~~~g~~G-~~lGl~~~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~n-s~~s~~~~~-----~~~~~~~l-~~G~~~~v~ 190 (271)
. ...| +.+|-.+...++||.|||+.|. . ..|.+.+| +........ ++.+.... +.+.+.+++
T Consensus 88 -~---~~~g~~~fG~~~~f~Gl~I~~Dt~~n~---~---p~i~~~~NDGt~~yd~~~d~~~~~g~C~~~~rn~~~p~~ir 157 (215)
T cd06903 88 -N---ADVGTSSIYGPSKFDGLQLLIDNNGGS---G---GSLRGFLNDGSKDYKNEDVDSLAFGSCLFAYQDSGVPSTIR 157 (215)
T ss_pred -c---ccCCccccCCCCCCcEEEEEEECCCCC---C---ceEEEEECCCCeeccccCCcccccceeeEeccCCCCCEEEE
Confidence 1 1233 6788888999999999999873 1 33444443 322222111 22233333 446789999
Q ss_pred EEEeCcceEEEEEEEeCCCCCceEEEEeecCCCC-CC-CceEEEEEeecCCCCccceEEEEEEEEe
Q 024176 191 IYYDGWTKILYVYVAYAGNPLQKLIERPIPLSET-IP-SSVYVGFTASTGPDFSESHQVLDWTFTT 254 (271)
Q Consensus 191 I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~-l~-~~~yvGFSASTG~~~~~~h~I~sWsf~~ 254 (271)
|.|....+.|+|.++. +.|+.. .++ || ...|+||||+|| +..+.|+|++..+..
T Consensus 158 i~Y~~~~~~l~v~vd~-----~~Cf~~----~~v~lP~~~y~fGiSAaTg-~~~d~hdIl~~~~~~ 213 (215)
T cd06903 158 LSYDALNSLFKVQVDN-----RLCFQT----DKVQLPQGGYRFGITAANA-DNPESFEILKLKVWN 213 (215)
T ss_pred EEEECCCCEEEEEECC-----CEEEec----CCeecCCCCCEEEEEEcCC-CCCCcEEEEEEEEec
Confidence 9999976789998863 235443 232 56 567899999999 999999999987754
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.90 E-value=8.7e-22 Score=174.50 Aligned_cols=191 Identities=23% Similarity=0.327 Sum_probs=135.1
Q ss_pred CCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecCC
Q 024176 39 GSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDT 118 (271)
Q Consensus 39 ~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~ 118 (271)
.+|.+.|+|.+.++.||||++. +++.|.+|.+.|++.. .|+++++|+|.+. ....+|||||||++..+
T Consensus 22 ~~W~~~G~t~i~~~~IrLTp~~---------~~~~G~iws~~~~~~~--~w~i~~~Fri~g~-~~~~~g~G~a~W~t~~~ 89 (229)
T PF03388_consen 22 PNWDIGGSTVITDNFIRLTPDR---------QSQSGSIWSRKPIPFD--NWEIEFTFRISGQ-EKGLGGDGMAFWYTKDP 89 (229)
T ss_dssp TTEEEEET-EEESSEEEEE-SS---------TTEEEEEEESS-BEES--EEEEEEEEEEESS--SSS-S-EEEEEEESSS
T ss_pred CCEEECCeEEecCCEEEECCCc---------ccCEEEEEEcCCCCcc--CEEEEEEEEEecc-ccCcCCCeEEEEEEcCc
Confidence 5899999999999999999997 6999999999999994 8999999999986 45668999999999865
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeccCCCCCC-CCCCCceEEecCCCC-cccccc------CCCCCCcCCC-CCcEEE
Q 024176 119 SPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWS-DPDANHMGIDIANLT-SNPAKS------LDSSGIDLKS-GRPIQV 189 (271)
Q Consensus 119 ~~~~~g~~G~~lGl~~~~~~vAVEFDT~~N~~~~-Dp~~nHvgi~~ns~~-s~~~~~------~~~~~~~l~~-G~~~~v 189 (271)
...|..+|..+..+++||-||||.|.+-. ......|.+.+|... ...... ++.|...+++ +.+.++
T Consensus 90 -----~~~G~~fG~~~~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~~~~~~~dg~~~~~~~C~~~~rn~~~p~~~ 164 (229)
T PF03388_consen 90 -----GSDGPVFGGPDKFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTKSYDHDNDGKDQSLGSCSADYRNSDVPTRI 164 (229)
T ss_dssp -----SSSCSBTTB-SS-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS---GGGTTTTT-SEEEE---BTESSEEEE
T ss_pred -----cccccccCCCcccceEEEEEEcccCCCcccccccceEEEEecCCCccccccccCcccccccceeccCcCCCCEEE
Confidence 23788999988999999999999996421 123456766665432 211111 1112233333 567899
Q ss_pred EEEEeCcceEEEEEEEeC----CCCCceEEEE-eecCCCCCCCceEEEEEeecCCCCccceEEEEEEEE
Q 024176 190 HIYYDGWTKILYVYVAYA----GNPLQKLIER-PIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFT 253 (271)
Q Consensus 190 ~I~Yd~~~~~L~V~l~~~----~~p~~~~ls~-~vdL~~~l~~~~yvGFSASTG~~~~~~h~I~sWsf~ 253 (271)
+|.|... .|+|.++.. ......|+.. .++ ||+..|+||||+|| ...+.|+|++....
T Consensus 165 ri~Y~~~--~l~v~id~~~~~~~~~~~~Cf~~~~v~----LP~~~yfGvSA~Tg-~~~d~hdi~s~~~~ 226 (229)
T PF03388_consen 165 RISYSKN--TLTVSIDSNYLKNQDDWELCFTTDGVD----LPEGYYFGVSAATG-ELSDNHDILSVKTY 226 (229)
T ss_dssp EEEEETT--EEEEEEETSCCSECCTTEEEEEESTEE----GGSSBEEEEEEEES-SSGGEEEEEEEEEE
T ss_pred EEEEECC--eEEEEEecccccCCcCCcEEEEcCCee----cCCCCEEEEEecCC-CCCCcEEEEEEEEe
Confidence 9999986 588888732 2335666664 233 57788999999999 99999999987654
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-19 Score=167.14 Aligned_cols=229 Identities=19% Similarity=0.272 Sum_probs=164.2
Q ss_pred hhhHHHHhhccCCCCCCCC-CCCeeEEeC-CCCCCC-----CCCCCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEE
Q 024176 2 IFLLLLSIFLPSASSSIPV-DPPVSFSFS-SFNPKS-----CSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVG 74 (271)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~F~f~-~F~~~~-----~~~~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G 74 (271)
+|..+|++|-+-......+ .+--.|.|- +|.... -..--|...|||..+...|||+|+. +++.|
T Consensus 10 ~f~~lLllLa~~~~~~~~~~~~~rrFEYK~SFk~P~Laq~dgtiPFW~~~GdAIas~eqvRlaPSm---------rsrkG 80 (497)
T KOG3838|consen 10 LFCALLLLLAPHVPETGCGTPPHRRFEYKYSFKGPRLAQPDGTIPFWSHHGDAIASSEQVRLAPSM---------RSRKG 80 (497)
T ss_pred hHHHHHHHccCcCcccccCCCccceeeeeecccCCccccCCCCcceeeecCcccccccceeecccc---------ccccC
Confidence 3555555665544433333 233456663 665421 1123588999999899999999987 79999
Q ss_pred EEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCceEEEEEeccCCCCCCCC
Q 024176 75 RVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDP 154 (271)
Q Consensus 75 ~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~~~~~~g~~G~~lGl~~~~~~vAVEFDT~~N~~~~Dp 154 (271)
.||.+..+++. -|+++..|++++. ...||||||+|++... |--|+.+|-.+.++.+||-||.+.|.. .-
T Consensus 81 avWtka~~~fe--~weVev~~rVtGr--GRiGAdGlaiWYt~~~-----G~~GpVfGg~d~WnGigiffDSfdnD~--qk 149 (497)
T KOG3838|consen 81 AVWTKASVPFE--NWEVEVQFRVTGR--GRIGADGLAIWYTRGR-----GHVGPVFGGLDSWNGIGIFFDSFDNDG--QK 149 (497)
T ss_pred ceeecccCCcc--cceEEEEEEeccc--ccccCCceEEEEecCC-----CcccccccccccccceEEEeecccccC--Cc
Confidence 99999999995 6999999999995 6789999999998753 567889999999999999999999832 23
Q ss_pred CCCceEEecCCCC-cccccc------CCCCCCcCCCC-CcEEEEEEEeCcceEEEEEEEeCCCCCceEEEEeecCCCC-C
Q 024176 155 DANHMGIDIANLT-SNPAKS------LDSSGIDLKSG-RPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSET-I 225 (271)
Q Consensus 155 ~~nHvgi~~ns~~-s~~~~~------~~~~~~~l~~G-~~~~v~I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~-l 225 (271)
+++.|.+..|... +..... ++.+.-+++|- -+.+++|+|-+. +|+|.+...-.|. +-...+++..++ |
T Consensus 150 nnP~Is~~lndGt~~ydh~~DGasQ~LssCqrDFRNkPyPvRarItY~~n--vLtv~innGmtp~-d~yE~C~rve~~~l 226 (497)
T KOG3838|consen 150 NNPAISVLLNDGTIPYDHPGDGASQGLSSCQRDFRNKPYPVRARITYYGN--VLTVMINNGMTPS-DDYEFCVRVENLLL 226 (497)
T ss_pred CCccEEEEecCCcccccCCCccHHHHHHHhhHHhccCCCCceEEEEEecc--EEEEEEcCCCCCC-CCcceeEeccceec
Confidence 5566777766533 222211 11222344443 477999999975 7999998754443 223334455554 6
Q ss_pred CCceEEEEEeecCCCCccceEEEEEEEEe
Q 024176 226 PSSVYVGFTASTGPDFSESHQVLDWTFTT 254 (271)
Q Consensus 226 ~~~~yvGFSASTG~~~~~~h~I~sWsf~~ 254 (271)
|...|+|.||+|| ++.+-|+|+++.-.+
T Consensus 227 p~nGyFGvSAATG-gLADDHDVl~Fltfs 254 (497)
T KOG3838|consen 227 PPNGYFGVSAATG-GLADDHDVLSFLTFS 254 (497)
T ss_pred cCCCeeeeeeccc-ccccccceeeeEEee
Confidence 8999999999999 999999999986443
No 10
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.3e-18 Score=156.10 Aligned_cols=191 Identities=22% Similarity=0.308 Sum_probs=147.8
Q ss_pred CCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecCC
Q 024176 39 GSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDT 118 (271)
Q Consensus 39 ~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~ 118 (271)
-+|.+.|++.++.+.||||++. +++.|++|...||..+ +|+..+.|+++++ .+...|||||+|++.+.
T Consensus 72 ~~W~~~Gstvv~~~~irLT~d~---------qsk~GAv~n~~Pv~s~--~wev~v~fkv~~~-s~~lfgdG~Aiw~t~Er 139 (351)
T KOG3839|consen 72 PNWNLSGSTVVTSNYIRLTPDE---------QSKSGAVWNRQPVFSR--DWEVLVHFKVHGQ-SKNLFGDGMAIWYTKER 139 (351)
T ss_pred cCccccccEEEEeeeeeccccc---------cccccccccCCCcccc--ceeEEEEEEEecC-CCcccccceEEEeeccc
Confidence 5899999999999999999998 6999999999999975 7999999999998 66889999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeccCCCCCCCCC--CCceEEecC-CCCcccc------ccCCCCCCcCCCC-CcEE
Q 024176 119 SPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDPD--ANHMGIDIA-NLTSNPA------KSLDSSGIDLKSG-RPIQ 188 (271)
Q Consensus 119 ~~~~~g~~G~~lGl~~~~~~vAVEFDT~~N~~~~Dp~--~nHvgi~~n-s~~s~~~------~~~~~~~~~l~~G-~~~~ 188 (271)
..+|+.+|-.++.+++||-.|||.|.. +-+. .+.+.++++ +..+... +.+..+...+++. -...
T Consensus 140 -----~q~GPvFG~~dkF~GL~vfidtY~n~~-g~~~~v~P~isvmv~~gs~sYD~~~Dg~~tel~gc~a~~rn~~~dt~ 213 (351)
T KOG3839|consen 140 -----AQPGPVFGSKDKFTGLAVFIDTYGNHN-GPHEHVFPYISVMVNIGSLSYDHSKDGTHTELAGCTANFRNLPHDTL 213 (351)
T ss_pred -----ccCCCCCCCcccceeEEEEEeccCCcC-CCcccceeeEEEEeccCCcccccCCCCCccccccceeeeccCCCcce
Confidence 247899999999999999999999853 1121 234555553 2223211 1222233344444 2457
Q ss_pred EEEEEeCcceEEEEEEEeCCCCCceEEEEeecCCCC-CCCceEEEEEeecCCCCccceEEEEEEEE
Q 024176 189 VHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSET-IPSSVYVGFTASTGPDFSESHQVLDWTFT 253 (271)
Q Consensus 189 v~I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~-l~~~~yvGFSASTG~~~~~~h~I~sWsf~ 253 (271)
+.|+|+. ++|++..+..++. .+..+.++.++ +|..-|+|+||+|| .+.+.|+|.+-.+.
T Consensus 214 ~~iry~~--~~l~~~~dl~~~~---~~~~c~~~n~v~lp~g~~fg~SasTG-dlSd~HdivS~kl~ 273 (351)
T KOG3839|consen 214 VVIRYEK--KTLSISIDLEGPN---EWIDCFSLNNVELPLGYFFGVSASTG-DLSDSHDIVSLKLF 273 (351)
T ss_pred eEEEecC--CceEEEEecCCCc---eeeeeeeecceecccceEEeeeeccC-ccchhhHHHHhhhh
Confidence 8899998 5788877765532 56667778776 78899999999999 99999999987664
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=99.41 E-value=7e-11 Score=104.02 Aligned_cols=193 Identities=20% Similarity=0.239 Sum_probs=120.5
Q ss_pred EeCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecCCCCCCCCCCCC
Q 024176 49 PSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGG 128 (271)
Q Consensus 49 ~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~~~~~~g~~G~ 128 (271)
+.+|.||||++. .+|+|.+.|.++++..+...+.+|.+...+. ...+||||||||....-.+..|..|+
T Consensus 29 i~~g~LRLT~~~---------~nqata~~~~~~FPs~~n~v~veFd~yayg~--~g~GADGia~vLsDasv~p~~G~fGG 97 (255)
T cd06900 29 VVNNRLRLTDAS---------GNQATAVTLQRLFPSAGNYVEVEFDYYAYGS--GGNGADGVALVLSDASVTPQAGAFGG 97 (255)
T ss_pred cccCeEEeccCc---------cCcceeEEEeeeeccCCCeEEEEEEEEEecC--CCCCCceEEEEEeCCCcCCcCCCcCc
Confidence 347999999987 6999999999999985324889998888763 56799999999996542234588999
Q ss_pred CCCCCCC--------CceEEEEEeccCCCCC-CCC-------CCCceEEecCCCCccccccCC-----CCCCcCCC----
Q 024176 129 NLGLSNG--------VSQLAVELDTYKNDYW-SDP-------DANHMGIDIANLTSNPAKSLD-----SSGIDLKS---- 183 (271)
Q Consensus 129 ~lGl~~~--------~~~vAVEFDT~~N~~~-~Dp-------~~nHvgi~~ns~~s~~~~~~~-----~~~~~l~~---- 183 (271)
.|||... -..++|-||-|-|-.- .+. ..+.|+|--.+..-..+..+. ...+..++
T Consensus 98 sLGYa~~~~~~~GfaGGwLGiGlDEyGNFsn~~eg~~~~~g~r~~sV~vRGsg~g~~gY~yl~gt~~~~~~id~~~~~~~ 177 (255)
T cd06900 98 SLGYAQRNDGVPGFAGGWLGIGLDEYGNFSNPNEGRNGFSGRRPQSVTVRGSGSGYTGYKYITGTGVLPPGIDNNSTSTP 177 (255)
T ss_pred ccccccccCCCCccccceEEEEEeccccccCCCCCccCCcccccceEEEECCCCCCcCceEecccCCCCcccccCCCCCC
Confidence 9999863 3478899999988421 111 123344432211000010010 00111111
Q ss_pred CCcEEEEEEEeCcc---eEEEEEEEeCCCC-CceEEE-E-eecCC--CCCCCceEEEEEeecCCCCccceEEEEEEEE
Q 024176 184 GRPIQVHIYYDGWT---KILYVYVAYAGNP-LQKLIE-R-PIPLS--ETIPSSVYVGFTASTGPDFSESHQVLDWTFT 253 (271)
Q Consensus 184 G~~~~v~I~Yd~~~---~~L~V~l~~~~~p-~~~~ls-~-~vdL~--~~l~~~~yvGFSASTG~~~~~~h~I~sWsf~ 253 (271)
...|+-+|.-|+.. ..|+|.-+..... ..+++. . .++.. .-.|+..+++|++||| +....|+|-..+..
T Consensus 178 ~~~hrY~i~Ids~~~~~~~vsV~R~~~~gg~~~~~I~~~d~~~~~~q~avP~~f~lS~TgSTG-gstN~HEIdnf~VC 254 (255)
T cd06900 178 APGHRYRITIDSTNGDNAWLSVERDIGNGGAYFVVILTFDALAEQNQDAIPENFYLSFTGSTG-GSTNTHEIDNFQVC 254 (255)
T ss_pred CCceEEEEEEecCCCCceEEEEEEEccCCceeEEeecceeeccccCCCCCCccEEEEEEecCC-CcccceeecceEec
Confidence 23466666666642 3456655532221 222221 1 12223 3578999999999999 99999999887653
No 12
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=89.70 E-value=8.7 Score=30.36 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=55.0
Q ss_pred EEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCceEEEEEeccCCCCCCC
Q 024176 74 GRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSD 153 (271)
Q Consensus 74 G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~~~~~~g~~G~~lGl~~~~~~vAVEFDT~~N~~~~D 153 (271)
|.+.|+.+.... ..|+.+|.|+... .+|+-|.+.... ..+.++||.. +
T Consensus 8 ~~i~~~~~~~~~-~~~~i~~~frt~~-------~~g~l~~~~~~~----------------~~~~~~l~l~---~----- 55 (151)
T cd00110 8 SYVRLPTLPAPR-TRLSISFSFRTTS-------PNGLLLYAGSQN----------------GGDFLALELE---D----- 55 (151)
T ss_pred ceEEecCCCCCc-ceeEEEEEEEeCC-------CCeEEEEecCCC----------------CCCEEEEEEE---C-----
Confidence 667777665423 3677777776654 388888876531 1345666654 1
Q ss_pred CCCCceEEecCCCCccccccCCCCCCcCCCCCcEEEEEEEeCcceEEEEEEEe
Q 024176 154 PDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAY 206 (271)
Q Consensus 154 p~~nHvgi~~ns~~s~~~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 206 (271)
.++.+.++.... ...+.. ...+.+|++|++.|.+++. .+.++++.
T Consensus 56 ---g~l~~~~~~g~~--~~~~~~-~~~v~dg~Wh~v~i~~~~~--~~~l~VD~ 100 (151)
T cd00110 56 ---GRLVLRYDLGSG--SLVLSS-KTPLNDGQWHSVSVERNGR--SVTLSVDG 100 (151)
T ss_pred ---CEEEEEEcCCcc--cEEEEc-cCccCCCCEEEEEEEECCC--EEEEEECC
Confidence 134444332211 011110 1258899999999999984 67777765
No 13
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=89.58 E-value=2.8 Score=44.71 Aligned_cols=114 Identities=25% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCeEEecceEEe---CCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecC-----------CCeeEEEEEEEecCCCCC
Q 024176 39 GSLICMGAVTPS---YGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP-----------AMISTTFTIRISPYPNTT 104 (271)
Q Consensus 39 ~~l~l~G~A~~~---~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~-----------~sFst~F~F~I~~~~~~~ 104 (271)
+.|.++|...+. ++.++|..-. ..-.+|++-..|+.++. +.|++.|-|+....
T Consensus 804 ~~LvFNG~~Yld~~K~~~~~ls~l~---------a~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt~---- 870 (1591)
T KOG3514|consen 804 SGLVFNGQDYLDKCKMGDIQLSELS---------ARFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKTT---- 870 (1591)
T ss_pred hheEECcHHHHHHHhcCCcchhhcc---------hhhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEeec----
Confidence 468999999863 6788885433 34567888888988866 67888777776542
Q ss_pred CCCCceEEEEecCCCCCCCCCCCCCCCCCCCCceEEEEEeccCCCCCCCCCCCceEEecCCC-CccccccCCCCCCcCCC
Q 024176 105 DSADGMTFVFATDTSPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANL-TSNPAKSLDSSGIDLKS 183 (271)
Q Consensus 105 ~~gdGlAF~l~~~~~~~~~g~~G~~lGl~~~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~ns~-~s~~~~~~~~~~~~l~~ 183 (271)
..|||- +-+.+ . -+..+|||.=--+ =|--+|.... .+.+- .....|+|
T Consensus 871 -sp~gll--~fn~g------d---------~ndfi~velvnG~---------ihYtfdlg~gp~~~k~----~sr~hlnD 919 (1591)
T KOG3514|consen 871 -SPDGLL--LFNSG------D---------GNDFIAVELVNGY---------IHYTFDLGNGPTSMKG----PSRQHLND 919 (1591)
T ss_pred -CCCeEE--EecCC------C---------CCceEEEEEeCcE---------EEEEEEcCCCcccccC----cccCcCcc
Confidence 467753 33322 1 2568888842110 1223333221 11111 11356889
Q ss_pred CCcEEEEEEEeCc
Q 024176 184 GRPIQVHIYYDGW 196 (271)
Q Consensus 184 G~~~~v~I~Yd~~ 196 (271)
.++|+|.|.=|..
T Consensus 920 nrWHnV~I~rd~~ 932 (1591)
T KOG3514|consen 920 NRWHNVLIYRDKT 932 (1591)
T ss_pred ccceeEEEEcCCC
Confidence 9999999977753
No 14
>smart00282 LamG Laminin G domain.
Probab=79.09 E-value=28 Score=27.12 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=21.0
Q ss_pred CcCCCCCcEEEEEEEeCcceEEEEEEEe
Q 024176 179 IDLKSGRPIQVHIYYDGWTKILYVYVAY 206 (271)
Q Consensus 179 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 206 (271)
..+++|++|++.|.++.. .++++++.
T Consensus 57 ~~~~dg~WH~v~i~~~~~--~~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNGR--RVTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeCC--EEEEEECC
Confidence 568999999999999965 56677764
No 15
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=50.49 E-value=2.3e+02 Score=31.24 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCceEEEEEeccCCCCCCCCCCCceE--EecCCCCccccccCCCCCCcCCCCCcEEEEEEEeCcceEEEEEEEeCCCC-C
Q 024176 135 GVSQLAVELDTYKNDYWSDPDANHMG--IDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNP-L 211 (271)
Q Consensus 135 ~~~~vAVEFDT~~N~~~~Dp~~nHvg--i~~ns~~s~~~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p-~ 211 (271)
....+|||.= +.|+- +|.+|....-.+. ....+||++|+|.++=++.+..+.|.-- ..+ .
T Consensus 486 ~~d~~A~ELl-----------dghlyl~ldlGSG~iklras----~rkv~DGeWhhv~l~R~gR~gsvsVd~~--~~df~ 548 (1591)
T KOG3514|consen 486 ATDYFAIELL-----------DGHLYLLLDLGSGVIKLRAS----SRKVNDGEWHHVDLQRDGRTGSVSVDAI--KTDFS 548 (1591)
T ss_pred cccEEEEEEe-----------CCeEEEEEecCCceEEeeee----cccccCCceEEEEeeccCccceEEEeee--ecCcc
Confidence 4568899852 13554 4445543211111 3568899999999999988766665322 111 2
Q ss_pred ceEEEEeecCCCCCCCceEEE
Q 024176 212 QKLIERPIPLSETIPSSVYVG 232 (271)
Q Consensus 212 ~~~ls~~vdL~~~l~~~~yvG 232 (271)
.|--+..+|| .+.||+|
T Consensus 549 tpG~s~iL~l----d~~mylG 565 (1591)
T KOG3514|consen 549 TPGDSEILDL----DDPMYLG 565 (1591)
T ss_pred CCCcceeEee----cCceeec
Confidence 2333445554 3466666
No 16
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=30.89 E-value=2.1e+02 Score=21.61 Aligned_cols=46 Identities=20% Similarity=0.101 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEEEeCcceEEEEEEEeCCCCCceEEEEeecCCCCCCCceEEEEE
Q 024176 181 LKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFT 234 (271)
Q Consensus 181 l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~l~~~~yvGFS 234 (271)
|+..+....||.++.. .++|..+. ...|+++.. |-. -..--|||||
T Consensus 49 ls~~e~~~fwI~~~~G--~I~vg~~g---~~~pfl~~~-Dp~--~~~v~yvGft 94 (102)
T PF12248_consen 49 LSPSEFRMFWISWRDG--TIRVGRGG---EDEPFLEWT-DPE--PIPVNYVGFT 94 (102)
T ss_pred CCCCccEEEEEEECCC--EEEEEECC---CccEEEEEE-CCC--CCcccEEEEe
Confidence 5778999999997765 57776653 245788765 322 2346799994
No 17
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=29.10 E-value=67 Score=25.36 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.1
Q ss_pred CCcEEEEEEEeCcceEEEEEEEe
Q 024176 184 GRPIQVHIYYDGWTKILYVYVAY 206 (271)
Q Consensus 184 G~~~~v~I~Yd~~~~~L~V~l~~ 206 (271)
|+++++.+.||+.+..++++++.
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG 83 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNG 83 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECC
Confidence 89999999999988899999975
No 18
>PF07472 PA-IIL: Fucose-binding lectin II (PA-IIL); InterPro: IPR010907 This entry represents calcium-mediated lectins. Structures have been determined for both fucose-binding lectin II (PA-IIL) [] and mannose-specific lectin II (RS-IIL) []. These proteins have homologous structures, their monomers consisting of a 9-stranded beta sandwich with Greek-key topology. Each monomer contains two calcium ions that mediate an exceptionally high binding affinity to the monosaccharide ligand in a recognition mode unique among carbohydrate-protein interactions. In Pseudomonas aeruginosa, PA-IIL contributes to the pathogenic virulence of the bacterium, functioning as a tetramer when binding fucose []. In the plant pathogen Ralstonia solanacearum (Pseudomonas solanacearum), RS-IIL recognises fucose, but displays much higher affinity to mannose and fructose, which is opposite to the preference of PA-IIL. ; PDB: 2WRA_A 2WR9_C 1OUX_C 2VUC_B 1GZT_C 2BOJ_D 2JDM_D 2JDH_D 1W8F_D 1UZV_A ....
Probab=28.59 E-value=2.9e+02 Score=21.68 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=33.6
Q ss_pred EeCcceEEEEEEEeCCCCCceEEEEeecCCCCCCCceEEEEEeec-CC--CCccceEEEEEE
Q 024176 193 YDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTAST-GP--DFSESHQVLDWT 251 (271)
Q Consensus 193 Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~l~~~~yvGFSAST-G~--~~~~~h~I~sWs 251 (271)
|++...+++|.+...+||.+ +.+...+|.. ++|+|.=+|- |. +..+.--|+.|-
T Consensus 50 l~Sg~Gkv~i~v~~ngk~s~-l~~~q~~l~~----~~~~~ivgsEdGtD~DYND~ivvLnWp 106 (107)
T PF07472_consen 50 LNSGSGKVRIEVTANGKPSK-LRSSQNTLDG----KPYFGIVGSEDGTDNDYNDSIVVLNWP 106 (107)
T ss_dssp EE-TTSEEEEEEEETTEE-E-EEEEEEEETT----TEEEEEEEEESSSSSSSBSEEEEEEES
T ss_pred EecCCCeEEEEEEeCCcccc-ceeeeeeccC----ceeEEEEEcccCCCCCcccEEEEEecc
Confidence 67777777777777776643 4555555543 7777766554 31 466777788884
No 19
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=26.14 E-value=82 Score=27.07 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=25.0
Q ss_pred CcCCCCCcEEEEEEEeCcceEEEEEEEe
Q 024176 179 IDLKSGRPIQVHIYYDGWTKILYVYVAY 206 (271)
Q Consensus 179 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 206 (271)
..+.+|++|++-+.|++.+.+++++++.
T Consensus 85 ~~~~~g~W~hvc~tw~~~~g~~~lyvnG 112 (206)
T smart00159 85 VPESDGKWHHICTTWESSSGIAELWVDG 112 (206)
T ss_pred ccccCCceEEEEEEEECCCCcEEEEECC
Confidence 3577899999999999999999999975
No 20
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=23.13 E-value=2e+02 Score=25.50 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=40.0
Q ss_pred CCeEEecceEEe--CCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecCCCeeEEEEEEEecCCCCCCCCCceEEEEec
Q 024176 39 GSLICMGAVTPS--YGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFAT 116 (271)
Q Consensus 39 ~~l~l~G~A~~~--~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~gdGlAF~l~~ 116 (271)
.+|.++|.+.++ +|.++|......| .-.+.-+..+-.|..+.+ ....+..|+.... -|||-++..
T Consensus 18 ~~w~~eG~~~~t~~~~~m~l~~~~~~e-----~~~~~~hfVlW~p~~Fp~-~i~IsweF~p~~e-------pGLamlfF~ 84 (218)
T PF09224_consen 18 ADWVAEGPAKVTFQNGRMELSGELDPE-----QFGDAAHFVLWCPEVFPD-DIRISWEFTPLAE-------PGLAMLFFA 84 (218)
T ss_dssp TT-EEEESEEEE-GGGSEEEE-----------ESSTT--EEEE-SS-B-S-SEEEEEEEEEEE--------SEEEEEEEE
T ss_pred hhhhccCCeEEeecCCcEEEeeeeccc-----cccccccEEEECcccCCC-CeEEEEEEEEcCC-------CCEEEEEee
Confidence 589999999986 7899997432100 124567778888888874 8899999988874 577766643
No 21
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=22.61 E-value=98 Score=26.40 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEEEeCcceEEEEEEEeC
Q 024176 181 LKSGRPIQVHIYYDGWTKILYVYVAYA 207 (271)
Q Consensus 181 l~~G~~~~v~I~Yd~~~~~L~V~l~~~ 207 (271)
..+|++|++-+.|++.+.+++++++..
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG~ 113 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNGK 113 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECCE
Confidence 478999999999999999999999763
No 22
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=20.35 E-value=1.7e+02 Score=21.82 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=20.6
Q ss_pred CcCCCCCcEEEEEEEeCcceEEEEEEEe
Q 024176 179 IDLKSGRPIQVHIYYDGWTKILYVYVAY 206 (271)
Q Consensus 179 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 206 (271)
..+.+|++|++.|.++... +++.++.
T Consensus 49 ~~~~dg~wh~v~i~~~~~~--~~l~Vd~ 74 (128)
T PF02210_consen 49 SNLNDGQWHKVSISRDGNR--VTLTVDG 74 (128)
T ss_dssp SSSTSSSEEEEEEEEETTE--EEEEETT
T ss_pred ccccccceeEEEEEEeeee--EEEEecC
Confidence 4588999999999999874 6666653
Done!