Query 024177
Match_columns 271
No_of_seqs 133 out of 168
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:38:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0718 Molecular chaperone (D 100.0 1.4E-75 3E-80 558.5 30.1 261 2-271 280-543 (546)
2 PF11875 DUF3395: Domain of un 100.0 5.4E-51 1.2E-55 345.7 17.9 148 117-265 1-151 (151)
3 PRK08476 F0F1 ATP synthase sub 95.5 0.19 4.2E-06 42.1 10.3 70 91-160 5-90 (141)
4 PRK14472 F0F1 ATP synthase sub 95.0 0.27 5.9E-06 42.4 10.1 70 91-160 16-101 (175)
5 PRK13454 F0F1 ATP synthase sub 95.0 0.3 6.6E-06 42.6 10.4 65 94-158 32-112 (181)
6 PRK09174 F0F1 ATP synthase sub 94.4 0.39 8.4E-06 42.9 9.9 28 93-120 53-80 (204)
7 PRK13461 F0F1 ATP synthase sub 94.3 0.56 1.2E-05 39.7 10.3 30 91-120 3-32 (159)
8 PRK14473 F0F1 ATP synthase sub 94.2 0.59 1.3E-05 39.7 10.2 68 91-158 6-89 (164)
9 PRK14471 F0F1 ATP synthase sub 94.2 0.59 1.3E-05 39.7 10.2 28 93-120 8-35 (164)
10 PRK13453 F0F1 ATP synthase sub 94.1 0.59 1.3E-05 40.3 10.2 68 91-158 16-99 (173)
11 PRK13460 F0F1 ATP synthase sub 93.8 0.78 1.7E-05 39.5 10.2 30 91-120 14-43 (173)
12 PRK06568 F0F1 ATP synthase sub 93.2 1.1 2.3E-05 38.5 9.9 27 94-120 5-31 (154)
13 PRK06569 F0F1 ATP synthase sub 93.0 1.1 2.4E-05 38.5 9.8 29 92-120 9-37 (155)
14 PRK14474 F0F1 ATP synthase sub 92.7 1.2 2.6E-05 40.9 10.2 30 91-120 3-32 (250)
15 PF02140 Gal_Lectin: Galactose 92.5 0.079 1.7E-06 39.7 1.9 71 169-246 9-79 (80)
16 TIGR03321 alt_F1F0_F0_B altern 92.3 1.4 3.1E-05 40.0 10.2 30 91-120 3-32 (246)
17 PRK05759 F0F1 ATP synthase sub 92.2 1.9 4.2E-05 36.0 10.2 26 95-120 6-31 (156)
18 CHL00118 atpG ATP synthase CF0 91.9 1.8 3.9E-05 36.6 9.8 26 95-120 24-49 (156)
19 PRK06231 F0F1 ATP synthase sub 91.3 2.2 4.8E-05 37.9 10.0 65 95-159 50-130 (205)
20 PRK07352 F0F1 ATP synthase sub 91.0 2.9 6.3E-05 35.9 10.2 68 92-159 18-101 (174)
21 PRK09173 F0F1 ATP synthase sub 89.8 3.7 7.9E-05 34.7 9.7 27 131-157 56-82 (159)
22 PRK07353 F0F1 ATP synthase sub 89.7 4.7 0.0001 33.1 10.1 25 96-120 8-32 (140)
23 PRK08475 F0F1 ATP synthase sub 88.6 5.2 0.00011 34.4 9.9 66 94-159 23-104 (167)
24 PRK13455 F0F1 ATP synthase sub 87.8 6.4 0.00014 34.1 10.1 22 97-118 30-51 (184)
25 PF00430 ATP-synt_B: ATP synth 87.8 4.5 9.9E-05 32.4 8.6 25 96-120 2-26 (132)
26 CHL00019 atpF ATP synthase CF0 87.5 7.3 0.00016 33.8 10.3 30 91-120 22-51 (184)
27 PRK13428 F0F1 ATP synthase sub 85.9 6.1 0.00013 39.2 9.9 25 96-120 4-28 (445)
28 TIGR01144 ATP_synt_b ATP synth 85.1 7.9 0.00017 32.0 8.8 16 105-120 7-22 (147)
29 KOG0718 Molecular chaperone (D 83.4 38 0.00083 34.3 14.0 108 2-111 255-382 (546)
30 PRK14475 F0F1 ATP synthase sub 82.7 15 0.00032 31.3 9.8 28 131-158 64-91 (167)
31 COG0711 AtpF F0F1-type ATP syn 79.9 19 0.0004 30.8 9.4 25 96-120 9-33 (161)
32 PF13568 OMP_b-brl_2: Outer me 79.5 26 0.00056 28.4 9.9 83 2-93 8-100 (173)
33 PRK06531 yajC preprotein trans 78.0 3.5 7.6E-05 33.7 4.1 23 99-121 4-26 (113)
34 KOG4729 Galactoside-binding le 77.8 1.3 2.8E-05 41.1 1.7 19 230-248 111-130 (265)
35 COG1862 YajC Preprotein transl 73.0 5.6 0.00012 31.6 4.0 26 96-121 7-33 (97)
36 PF06936 Selenoprotein_S: Sele 64.2 24 0.00053 31.3 6.6 9 229-237 164-172 (190)
37 PRK05886 yajC preprotein trans 64.0 12 0.00027 30.3 4.3 22 99-120 5-27 (109)
38 TIGR00739 yajC preprotein tran 61.2 15 0.00032 28.3 4.1 20 162-181 36-56 (84)
39 PRK06569 F0F1 ATP synthase sub 57.8 1.2E+02 0.0027 26.0 9.9 18 131-148 64-81 (155)
40 PF02462 Opacity: Opacity fami 56.7 1E+02 0.0022 25.9 8.6 64 14-77 37-111 (132)
41 PF03895 YadA_anchor: YadA-lik 55.9 82 0.0018 23.4 7.6 38 27-64 24-63 (78)
42 KOG4326 Mitochondrial F1F0-ATP 55.8 89 0.0019 23.7 7.8 17 105-121 24-40 (81)
43 PRK00247 putative inner membra 55.6 38 0.00081 33.8 6.8 12 136-147 348-359 (429)
44 PF01459 Porin_3: Eukaryotic p 54.9 1.5E+02 0.0033 26.2 10.9 57 2-60 176-236 (273)
45 PF00886 Ribosomal_S16: Riboso 53.8 5.2 0.00011 29.1 0.4 21 223-243 24-46 (62)
46 cd07303 Porin3 Eukaryotic pori 52.5 1.7E+02 0.0037 26.9 10.4 56 2-60 172-231 (274)
47 PRK00040 rpsP 30S ribosomal pr 49.9 11 0.00023 28.7 1.6 15 223-237 31-45 (75)
48 PRK05585 yajC preprotein trans 48.6 32 0.00069 27.6 4.3 25 97-121 17-42 (106)
49 PF07271 Cytadhesin_P30: Cytad 48.6 57 0.0012 30.6 6.4 12 117-128 93-104 (279)
50 TIGR00002 S16 ribosomal protei 48.4 11 0.00024 28.8 1.5 14 223-236 30-43 (78)
51 PF10883 DUF2681: Protein of u 47.8 1.3E+02 0.0029 23.4 8.9 23 143-165 44-66 (87)
52 PRK13453 F0F1 ATP synthase sub 47.2 1.2E+02 0.0027 25.8 8.1 30 114-143 34-63 (173)
53 PF06936 Selenoprotein_S: Sele 43.9 72 0.0016 28.3 6.1 9 104-112 45-53 (190)
54 PRK09174 F0F1 ATP synthase sub 43.7 2.3E+02 0.0051 25.1 9.8 32 128-159 104-135 (204)
55 PRK14524 rpsP 30S ribosomal pr 40.9 12 0.00026 29.6 0.7 15 223-237 31-45 (94)
56 PF03179 V-ATPase_G: Vacuolar 40.8 1.4E+02 0.0029 23.3 6.8 40 123-162 16-55 (105)
57 PRK09098 type III secretion sy 39.2 2.1E+02 0.0045 26.0 8.6 24 88-111 15-38 (233)
58 PRK14474 F0F1 ATP synthase sub 39.2 1.7E+02 0.0038 26.7 8.1 30 131-160 59-88 (250)
59 PRK14523 rpsP 30S ribosomal pr 38.4 20 0.00043 30.3 1.7 15 223-237 31-45 (137)
60 PRK06568 F0F1 ATP synthase sub 37.0 2.7E+02 0.0058 23.8 9.2 31 128-158 55-85 (154)
61 KOG3419 Mitochondrial/chloropl 36.7 18 0.00039 29.4 1.1 16 223-238 32-47 (112)
62 PRK14525 rpsP 30S ribosomal pr 35.4 24 0.00052 27.6 1.6 14 223-236 32-45 (88)
63 TIGR02962 hdxy_isourate hydrox 34.8 37 0.00081 27.5 2.7 24 66-89 80-103 (112)
64 PF06305 DUF1049: Protein of u 34.1 1.7E+02 0.0036 20.6 7.2 10 79-88 5-14 (68)
65 PF14981 FAM165: FAM165 family 33.8 84 0.0018 21.9 3.8 7 105-111 22-28 (51)
66 PLN03086 PRLI-interacting fact 33.7 1.6E+02 0.0035 30.5 7.6 18 243-260 222-239 (567)
67 COG3814 Uncharacterized protei 33.4 34 0.00073 29.2 2.3 13 224-236 98-110 (157)
68 COG0228 RpsP Ribosomal protein 33.1 29 0.00063 27.1 1.7 20 223-242 31-50 (87)
69 cd05822 TLP_HIUase HIUase (5-h 32.6 43 0.00092 27.2 2.7 24 66-89 80-103 (112)
70 cd07305 Porin3_Tom40 Transloca 32.6 3.9E+02 0.0085 24.4 10.0 48 2-52 178-229 (279)
71 KOG4807 F-actin binding protei 32.2 1.2E+02 0.0027 30.2 6.2 46 123-168 361-406 (593)
72 PF13119 DUF3973: Domain of un 31.8 19 0.00042 24.1 0.5 14 228-241 23-37 (41)
73 PF02937 COX6C: Cytochrome c o 31.7 1.2E+02 0.0025 22.9 4.7 28 94-121 19-46 (73)
74 PF04357 DUF490: Family of unk 31.3 4.3E+02 0.0093 24.6 9.7 62 13-74 313-377 (379)
75 PF00576 Transthyretin: HIUase 31.1 54 0.0012 26.6 3.0 24 66-89 81-104 (112)
76 TIGR03142 cytochro_ccmI cytoch 30.6 77 0.0017 25.5 3.9 9 113-121 16-24 (117)
77 PRK14522 rpsP 30S ribosomal pr 30.3 27 0.00057 28.8 1.1 14 223-236 32-45 (116)
78 PF06212 GRIM-19: GRIM-19 prot 30.1 2.7E+02 0.0058 23.2 7.1 6 92-97 30-35 (130)
79 PF02699 YajC: Preprotein tran 29.6 59 0.0013 24.7 2.9 21 99-119 3-24 (82)
80 COG2351 Transthyretin-like pro 29.5 55 0.0012 27.2 2.8 24 66-89 92-115 (124)
81 PRK14472 F0F1 ATP synthase sub 29.0 3.6E+02 0.0078 22.9 9.5 25 134-158 86-110 (175)
82 cd05469 Transthyretin_like Tra 28.7 48 0.001 27.0 2.4 24 66-89 80-104 (113)
83 TIGR03321 alt_F1F0_F0_B altern 28.6 4.4E+02 0.0095 23.8 9.5 27 131-157 59-85 (246)
84 PF07946 DUF1682: Protein of u 28.0 4.6E+02 0.01 24.7 9.3 11 112-122 249-259 (321)
85 PRK14471 F0F1 ATP synthase sub 27.2 3.7E+02 0.0081 22.5 9.5 30 131-160 62-91 (164)
86 PRK14475 F0F1 ATP synthase sub 26.8 3.2E+02 0.0069 23.1 7.3 8 112-119 29-36 (167)
87 PRK15036 hydroxyisourate hydro 26.6 56 0.0012 27.4 2.5 24 66-89 105-128 (137)
88 PLN03059 beta-galactosidase; P 26.4 45 0.00099 36.0 2.3 16 232-247 824-839 (840)
89 CHL00118 atpG ATP synthase CF0 26.2 3.4E+02 0.0074 22.6 7.3 28 131-158 76-103 (156)
90 KOG3006 Transthyretin and rela 25.9 87 0.0019 26.1 3.4 84 5-89 28-123 (132)
91 PRK12772 bifunctional flagella 25.9 1.6E+02 0.0035 30.6 6.2 25 150-174 502-526 (609)
92 PF10960 DUF2762: Protein of u 25.5 2.9E+02 0.0063 20.6 8.0 30 130-159 39-68 (71)
93 TIGR00328 flhB flagellar biosy 25.2 2E+02 0.0042 27.8 6.2 24 150-173 239-262 (347)
94 PRK12468 flhB flagellar biosyn 25.1 1.9E+02 0.0042 28.3 6.3 24 150-173 246-269 (386)
95 KOG0163 Myosin class VI heavy 25.1 1.6E+02 0.0036 31.9 6.0 44 123-166 936-979 (1259)
96 PRK08156 type III secretion sy 24.9 1.9E+02 0.0041 28.2 6.1 24 150-173 234-257 (361)
97 COG1377 FlhB Flagellar biosynt 24.7 2.7E+02 0.0058 27.3 7.0 24 150-173 246-269 (363)
98 PRK13461 F0F1 ATP synthase sub 24.3 4.2E+02 0.009 22.0 9.5 31 129-159 57-87 (159)
99 PF01093 Clusterin: Clusterin; 24.3 2.9E+02 0.0064 27.7 7.4 38 128-165 36-73 (436)
100 CHL00005 rps16 ribosomal prote 24.1 33 0.00072 26.5 0.6 14 223-236 31-44 (82)
101 PF07543 PGA2: Protein traffic 24.1 1.1E+02 0.0023 25.9 3.7 13 110-122 25-37 (140)
102 PF10809 DUF2732: Protein of u 23.9 2.8E+02 0.006 21.2 5.6 37 128-164 38-74 (77)
103 PRK06298 type III secretion sy 23.8 2.2E+02 0.0047 27.7 6.3 24 150-173 240-263 (356)
104 PRK12721 secretion system appa 23.7 2.1E+02 0.0045 27.7 6.1 24 150-173 239-262 (349)
105 PF05546 She9_MDM33: She9 / Md 23.7 2.6E+02 0.0057 25.2 6.3 24 104-128 163-186 (207)
106 PF01103 Bac_surface_Ag: Surfa 23.7 4.9E+02 0.011 23.0 8.3 33 2-34 8-40 (323)
107 PF01312 Bac_export_2: FlhB Hr 23.6 1.9E+02 0.0042 27.7 5.9 24 150-173 241-264 (343)
108 PLN03086 PRLI-interacting fact 23.6 2.5E+02 0.0054 29.2 6.9 13 167-179 74-86 (567)
109 COG5612 Predicted integral mem 23.4 2E+02 0.0044 24.3 5.1 39 115-153 47-85 (148)
110 PRK05702 flhB flagellar biosyn 23.3 2.2E+02 0.0048 27.6 6.3 24 150-173 246-269 (359)
111 KOG2302 T-type voltage-gated C 23.2 2E+02 0.0043 32.4 6.2 21 81-104 1350-1370(1956)
112 TIGR01404 FlhB_rel_III type II 23.2 2.1E+02 0.0046 27.5 6.0 24 150-173 238-261 (342)
113 PRK12705 hypothetical protein; 22.7 6.9E+02 0.015 25.6 9.8 14 96-109 5-18 (508)
114 PF03040 CemA: CemA family; I 22.6 5.9E+02 0.013 23.2 9.3 28 94-121 11-38 (230)
115 cd07306 Porin3_VDAC Voltage-de 22.0 6.1E+02 0.013 23.1 10.3 55 3-60 172-230 (276)
116 KOG3654 Uncharacterized CH dom 21.9 2.5E+02 0.0054 29.0 6.3 10 198-207 519-528 (708)
117 PF04995 CcmD: Heme exporter p 21.9 1.8E+02 0.0039 19.5 3.9 16 114-129 22-37 (46)
118 PRK14473 F0F1 ATP synthase sub 21.8 4.8E+02 0.01 21.8 9.5 29 133-161 75-103 (164)
119 COG3114 CcmD Heme exporter pro 21.7 3.5E+02 0.0075 20.2 5.9 11 95-105 21-31 (67)
120 PF15086 UPF0542: Uncharacteri 21.6 3.6E+02 0.0078 20.5 5.7 11 100-110 29-39 (74)
121 PRK12704 phosphodiesterase; Pr 21.1 7.2E+02 0.016 25.3 9.7 8 199-206 206-213 (520)
122 cd05821 TLP_Transthyretin Tran 20.3 85 0.0018 25.9 2.3 24 66-89 86-110 (121)
123 PRK14011 prefoldin subunit alp 20.1 5.3E+02 0.011 21.8 7.2 45 123-167 96-140 (144)
124 PRK13455 F0F1 ATP synthase sub 20.1 5.3E+02 0.011 22.0 7.4 66 94-159 32-109 (184)
No 1
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-75 Score=558.50 Aligned_cols=261 Identities=41% Similarity=0.629 Sum_probs=248.7
Q ss_pred ceeeEEEEccccceEEEEEEEecCCC--cceeEeEEEeeeeeEEEeeceeeeccceeEEEEEEEeee-eeEEEEEEEEcC
Q 024177 2 SAAGELKIGTSSFGASAHYTHRFSKK--SHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQ-GIFWKFELHRAG 78 (271)
Q Consensus 2 sw~~~~~~g~~~~~~s~~y~r~~~~~--~~~r~~~~~gt~g~~~e~g~~rkvs~~s~~g~~v~ig~~-Gv~lkl~~~R~g 78 (271)
+.++++.+|.++.+.+..|+|++.++ ++.++++++||+|+.+|+|++||||+||++|+.+++|++ ||+||++|+|+|
T Consensus 280 s~a~~~~i~sp~~~~~~~y~~k~k~~~es~~kl~~k~gt~G~~ve~g~~RkvSryStv~~~~svgvpsgi~~k~~~~R~~ 359 (546)
T KOG0718|consen 280 SLAVNLEIGSPHMYAGIAYTYKLKNATESQIKLSTKMGTFGLQVEYGTERKVSRYSTVGANVSVGVPSGITLKVKLLRAG 359 (546)
T ss_pred cceeeeEecCCcceeeeeeeeecCccccceeEEEEEeeeeeEEeeccccceeeeceeEEEEEEEcCCcceEEEEeeeccC
Confidence 45778899999999999999999886 899999999999999999999999999999999999995 999999999999
Q ss_pred eEEEEEEEeecCCChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 79 QKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANR 158 (271)
Q Consensus 79 Q~~~~PI~Ls~~~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r 158 (271)
|+|.|||+||+++.|+++|||+++|+++|++++++|++||..++++++.+++++++++.+.+||+||+.|+.||+++|+|
T Consensus 360 Q~~~~pI~l~d~~~p~avfya~v~P~~s~F~l~k~v~rP~~~~~k~~~~~~~~ek~~~~~~~Kk~eA~~av~LMq~t~~R 439 (546)
T KOG0718|consen 360 QKYSFPIHLCDELLPSAVFYALVFPITSYFGLKKFVLRPYLLKRKKRERLLRREKLKDSVEAKKVEAERAVKLMQETAER 439 (546)
T ss_pred cEEEEEEEeechhhhhhhhhhhhHHHHHHHHHHHHeecHHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEEEecCCCCCCccCCCCCCCccccCeeEEeeeeeeeEEecCCcEEEcCCccccCCCCccCCCCCCC
Q 024177 159 KRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEP 238 (271)
Q Consensus 159 ~~~~E~~~~GLVI~~A~YG~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dsg~L~l~~g~sKs~L~GF~DP~~g~~ 238 (271)
+++.|++|+||||++|+||+....+.. ...++.+||||||+||||+|| ||.||+ ++||+||||||||||++
T Consensus 440 i~~~E~~k~GLII~~A~Yg~~~~~~~~-------~~~~~~~iDVTVpiq~lV~~s-qL~l~e-~sKS~lpGFydpc~ge~ 510 (546)
T KOG0718|consen 440 IKKLEEEKGGLIIEYAEYGVVNAGGTR-------ANEPELVIDVTVPIQALVKNS-QLALHE-VSKSGLPGFYDPCPGEP 510 (546)
T ss_pred HHHHHHhcCceEEEEeeeccccccccc-------cCCCcceEEEEEEhhheeccC-eEEeee-cccccCCcccCCCCCCc
Confidence 999999999999999999998764321 224568999999999999998 999999 79999999999999999
Q ss_pred ceEEEEEEECCeeEEEEEcCCccccccccccCC
Q 024177 239 KQLYVEYTYGGNRYEVFVDDYEELFIPQEAHRI 271 (271)
Q Consensus 239 K~L~V~Y~f~~~~h~v~v~D~e~l~lP~~~H~~ 271 (271)
|.|+|.|+||++.|+|+|.|.|+|.||+|.|+.
T Consensus 511 K~L~I~Ytf~~q~h~v~v~D~e~L~lP~r~~~~ 543 (546)
T KOG0718|consen 511 KELEIVYTFHGQRHRVVVRDKEGLFLPSRGHRS 543 (546)
T ss_pred cEEEEEEEEcCceEEEEEecccccccccccccc
Confidence 999999999999999999999999999999984
No 2
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=100.00 E-value=5.4e-51 Score=345.69 Aligned_cols=148 Identities=46% Similarity=0.711 Sum_probs=134.4
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEecCCCCCCccCCCCC-CCccc
Q 024177 117 PYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARKALTKLGETGE-SSDEL 195 (271)
Q Consensus 117 P~~~r~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~~~~GLVI~~A~YG~~~~~~~~~~~~~-~~~~~ 195 (271)
|+.++++++++++++++++++++++|+||+++++||+++|+|++++|++++||||++|+||+.++..+.....+ .....
T Consensus 1 P~~~~~~~~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E~~~~GLVI~~A~YG~~~~~~~~~~~~~~~~~~~ 80 (151)
T PF11875_consen 1 PYRRRRKKREIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKEEEKGGLVILKAWYGNLPAKSDESNNDEPEDPDL 80 (151)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEcCCcccccccccccccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999987433221111 11234
Q ss_pred cCeeEEeeeeeeeEEecCCcEEEcCCccccCCCCccCCCC--CCCceEEEEEEECCeeEEEEEcCCcccccc
Q 024177 196 ASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCP--GEPKQLYVEYTYGGNRYEVFVDDYEELFIP 265 (271)
Q Consensus 196 ~~~~iDVTipLq~lV~dsg~L~l~~g~sKs~L~GF~DP~~--g~~K~L~V~Y~f~~~~h~v~v~D~e~l~lP 265 (271)
.+++|||||||||||+|| +|.||+|++||+|+||||||| |++|.|+|+|+|+|+.|+|+|+|.++|+||
T Consensus 81 ~~~~iDVTipLq~lV~dS-~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~f~g~~h~v~v~D~e~l~iP 151 (151)
T PF11875_consen 81 DPPVIDVTIPLQALVKDS-QLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYRFRGKLHEVTVDDREPLRIP 151 (151)
T ss_pred cCcEEEEhhhhhhEeecC-EEEEcCCCchhhCCCCCCCccccCCccEEEEEEEECCEEEEEEECCCCcccCC
Confidence 568999999999999999 999999999999999999999 999999999999999999999999999999
No 3
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=95.46 E-value=0.19 Score=42.07 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=44.5
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQN 154 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~ 154 (271)
++|...+|-++.=+++|+++++|+++|...--++| +..+.+++.++.+..+|+||....+-..+
T Consensus 5 l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~ 84 (141)
T PRK08476 5 VNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIA 84 (141)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777889999999999986521111 12223445556666677777666665555
Q ss_pred HHHHHH
Q 024177 155 VANRKR 160 (271)
Q Consensus 155 ~a~r~~ 160 (271)
.|+...
T Consensus 85 ~A~~ea 90 (141)
T PRK08476 85 KAKEEA 90 (141)
T ss_pred HHHHHH
Confidence 555443
No 4
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=94.99 E-value=0.27 Score=42.37 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=42.9
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQN 154 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~ 154 (271)
++|...||..+.=+++++++.+|+++|...--++| +..+..++.++++.++|++|.+.++-.+.
T Consensus 16 ~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~ 95 (175)
T PRK14472 16 PNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKE 95 (175)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778777777888889999999976531111 11122334555666666666666665555
Q ss_pred HHHHHH
Q 024177 155 VANRKR 160 (271)
Q Consensus 155 ~a~r~~ 160 (271)
.+++..
T Consensus 96 ~a~~~~ 101 (175)
T PRK14472 96 YAEKLR 101 (175)
T ss_pred HHHHHH
Confidence 555443
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=94.97 E-value=0.3 Score=42.55 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=38.8
Q ss_pred hhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 94 FFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQNVAN 157 (271)
Q Consensus 94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~ 157 (271)
..+||.++.=+++|+++++|+++|..+--++| +..+.+++.++.+.++|.||.+.++-.+..++
T Consensus 32 ~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~ 111 (181)
T PRK13454 32 NQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQ 111 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888877888899999999976521111 11222344555555666666555555544444
Q ss_pred H
Q 024177 158 R 158 (271)
Q Consensus 158 r 158 (271)
+
T Consensus 112 ~ 112 (181)
T PRK13454 112 A 112 (181)
T ss_pred H
Confidence 3
No 6
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=94.45 E-value=0.39 Score=42.87 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=21.9
Q ss_pred hhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 93 SFFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 93 ~~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
++-+||..+.=+++|+++.+++++|...
T Consensus 53 ~~~l~w~~I~FliL~~lL~k~~~~pI~~ 80 (204)
T PRK09174 53 ASQLLWLAITFGLFYLFMSRVILPRIGG 80 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888998998888765
No 7
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=94.32 E-value=0.56 Score=39.66 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=24.3
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
++|..++|-++.=+++++++.+|+++|...
T Consensus 3 ~~~~~~~~~~inF~il~~iL~~f~~kpi~~ 32 (159)
T PRK13461 3 INIPTIIATIINFIILLLILKHFFFDKIKA 32 (159)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 577777887777778888899999999765
No 8
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=94.23 E-value=0.59 Score=39.74 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=40.6
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQN 154 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~ 154 (271)
++|..++|-++.=+++++++.+|+++|...--.+| +..+...+.++.+.++|.||.+.++--+.
T Consensus 6 ~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~ 85 (164)
T PRK14473 6 INLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQE 85 (164)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777788899999999976531111 11222345555556666666555554444
Q ss_pred HHHH
Q 024177 155 VANR 158 (271)
Q Consensus 155 ~a~r 158 (271)
.+++
T Consensus 86 ~a~~ 89 (164)
T PRK14473 86 RARA 89 (164)
T ss_pred HHHH
Confidence 4443
No 9
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=94.19 E-value=0.59 Score=39.73 Aligned_cols=28 Identities=25% Similarity=0.108 Sum_probs=22.6
Q ss_pred hhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 93 SFFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 93 ~~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
|...||-++.=+++++++++|+++|...
T Consensus 8 ~~~~~~~~i~Flil~~ll~~~l~~pi~~ 35 (164)
T PRK14471 8 FGLFFWQTILFLILLLLLAKFAWKPILG 35 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4667777777778889999999999765
No 10
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=94.14 E-value=0.59 Score=40.34 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=40.8
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQN 154 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~ 154 (271)
++|..+||-.+.=+++++++.+|+++|...--.+| +..+..++.++++..+|.||.+.++-.+.
T Consensus 16 ~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~ 95 (173)
T PRK13453 16 VEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKV 95 (173)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777888999999999976421111 11122334555556666666555555555
Q ss_pred HHHH
Q 024177 155 VANR 158 (271)
Q Consensus 155 ~a~r 158 (271)
.+++
T Consensus 96 ~a~~ 99 (173)
T PRK13453 96 QARQ 99 (173)
T ss_pred HHHH
Confidence 5544
No 11
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=93.77 E-value=0.78 Score=39.46 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=22.9
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
++|...||.++.=+++++++.+|+++|..+
T Consensus 14 ~~~~~~~~~~i~Flil~~iL~~~~~kpi~~ 43 (173)
T PRK13460 14 VNPGLVVWTLVTFLVVVLVLKKFAWDVILK 43 (173)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355567777777777888888899999765
No 12
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=93.16 E-value=1.1 Score=38.49 Aligned_cols=27 Identities=7% Similarity=-0.202 Sum_probs=21.2
Q ss_pred hhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 94 FFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
+..||-++.=+++++++++|.++|...
T Consensus 5 ~~~fwq~I~FlIll~ll~kfawkPI~~ 31 (154)
T PRK06568 5 DESFWLAVSFVIFVYLIYRPAKKAILN 31 (154)
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 346777777777888899999999765
No 13
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=93.03 E-value=1.1 Score=38.50 Aligned_cols=29 Identities=14% Similarity=-0.032 Sum_probs=22.8
Q ss_pred ChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 92 SSFFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 92 ~~~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
.+..+||..+.=++.|++++++++.|..+
T Consensus 9 ~~sqifw~iI~FlILy~ll~kf~~ppI~~ 37 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYIFVYKFITPKAEE 37 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34567777777778899999999988765
No 14
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=92.69 E-value=1.2 Score=40.90 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=23.2
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
++|..+++-++-=+++++++++|+++|...
T Consensus 3 id~~t~~~qiInFlILv~lL~~fl~kPi~~ 32 (250)
T PRK14474 3 IDWFTVVAQIINFLILVYLLRRFLYKPIIQ 32 (250)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667776777777888899999999765
No 15
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=92.47 E-value=0.079 Score=39.72 Aligned_cols=71 Identities=25% Similarity=0.312 Sum_probs=31.8
Q ss_pred eEEEEEEecCCCCCCccCCCCCCCccccCeeEEeeeeeeeEEecCCcEEEcCCccccCCCCccCCCCCCCceEEEEEE
Q 024177 169 LIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYT 246 (271)
Q Consensus 169 LVI~~A~YG~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dsg~L~l~~g~sKs~L~GF~DP~~g~~K~L~V~Y~ 246 (271)
+-|..|.||..+...-.........+- ..-|+.--++..-++.-+=.|+.. .+ =|-|||||..|.|.|.|+
T Consensus 9 I~I~~A~YGR~~~~~C~~~~~~~~~~C--~~~~~~~~v~~~C~g~~~C~v~~~--~~---~f~dpC~~~~KyL~V~Y~ 79 (80)
T PF02140_consen 9 ISIDSAFYGRTSSSICPSSSSGSNTNC--SAPDALSIVKERCNGKQSCSVPAD--NS---VFGDPCPGTSKYLEVTYT 79 (80)
T ss_dssp EEEEEEEEEBSSSSTT--GGGCS-TTB----TTHHHHHHHHHTTBSEEEEESS--HH---HH--SSTTS--EEEEEEE
T ss_pred EEEEEeecCCCCCCCCcCCCcCCCCcc--ccccccchhHHhCCCCCccEEEec--cC---ccCCCCCCCCeEEEEEEE
Confidence 789999999986421110000000000 011233333333332223444442 11 146999999999999996
No 16
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=92.34 E-value=1.4 Score=40.05 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=23.3
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
++|..+++-++.=+++++++.+|+++|...
T Consensus 3 id~~t~~~qiInFlil~~lL~kfl~kPi~~ 32 (246)
T TIGR03321 3 IDWFTVIAQLINFLILVWLLKRFLYRPILD 32 (246)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 566667777777777888888999999765
No 17
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=92.19 E-value=1.9 Score=35.99 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=18.7
Q ss_pred hhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 95 FATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 95 ~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
.+||.++.=+++++++++++++|..+
T Consensus 6 ~~~~~~i~Flil~~il~~~~~~pi~~ 31 (156)
T PRK05759 6 TLIGQLIAFLILVWFIMKFVWPPIMK 31 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45555555566777888899999765
No 18
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=91.95 E-value=1.8 Score=36.63 Aligned_cols=26 Identities=15% Similarity=0.053 Sum_probs=19.5
Q ss_pred hhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 95 FATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 95 ~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
.++|-.+.-+++++++++|+++|...
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~~ 49 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLLK 49 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677888889999999754
No 19
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=91.27 E-value=2.2 Score=37.95 Aligned_cols=65 Identities=17% Similarity=0.069 Sum_probs=35.7
Q ss_pred hhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 95 FATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQNVANR 158 (271)
Q Consensus 95 ~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r 158 (271)
.+++-++.=+++++++.+|+++|..+--.+| +..+..++.++.+.++|+||.+.++-.+..+++
T Consensus 50 ~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~ 129 (205)
T PRK06231 50 VFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQ 129 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445577778888899976521111 112223345555666666666666666666554
Q ss_pred H
Q 024177 159 K 159 (271)
Q Consensus 159 ~ 159 (271)
.
T Consensus 130 ~ 130 (205)
T PRK06231 130 L 130 (205)
T ss_pred H
Confidence 3
No 20
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=91.02 E-value=2.9 Score=35.92 Aligned_cols=68 Identities=16% Similarity=0.044 Sum_probs=33.0
Q ss_pred ChhhhhhHhhHHHHHHHHHHhhhcchhhhHHHH--H--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 024177 92 SSFFATGAFIIPASVYFLLKKFILKPYYLKREK--Q--------------KALENMEKTSAQVQEAKAAAQKAQQLLQNV 155 (271)
Q Consensus 92 ~~~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~--~--------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~ 155 (271)
++...+|-++-=+++++++.+|+.+|..+--.+ . +..+..++.++++.++|+||.+.++-.+..
T Consensus 18 ~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~ 97 (174)
T PRK07352 18 NLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKAR 97 (174)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333433333445666677777886542111 1 112223344555566666666555555555
Q ss_pred HHHH
Q 024177 156 ANRK 159 (271)
Q Consensus 156 a~r~ 159 (271)
+++.
T Consensus 98 a~~~ 101 (174)
T PRK07352 98 AEAI 101 (174)
T ss_pred HHHH
Confidence 5443
No 21
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=89.84 E-value=3.7 Score=34.66 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 131 MEKTSAQVQEAKAAAQKAQQLLQNVAN 157 (271)
Q Consensus 131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~ 157 (271)
.++.++++..+|.||.+.++-.+..++
T Consensus 56 ~~~~e~~L~~A~~ea~~ii~~A~~~a~ 82 (159)
T PRK09173 56 LAEYQRKRKEAEKEAADIVAAAEREAE 82 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566655555554444444
No 22
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=89.73 E-value=4.7 Score=33.07 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=17.7
Q ss_pred hhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 96 ATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 96 ~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
+++-.+.-+++++++.+|+++|...
T Consensus 8 ~~~~~i~flil~~ll~~~l~~pi~~ 32 (140)
T PRK07353 8 LPLMAVQFVLLTFILNALFYKPVGK 32 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567788888899999765
No 23
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=88.57 E-value=5.2 Score=34.36 Aligned_cols=66 Identities=18% Similarity=0.045 Sum_probs=37.4
Q ss_pred hhhhhHhhHHHHHHHHHHhhhcchhhhHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 94 FFATGAFIIPASVYFLLKKFILKPYYLKREKQ----------------KALENMEKTSAQVQEAKAAAQKAQQLLQNVAN 157 (271)
Q Consensus 94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~r~~~~----------------~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~ 157 (271)
..+||.++-=++.++++.+|+++|...--++| +..+..++.++.+.++|++|.+.++-.+..++
T Consensus 23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe 102 (167)
T PRK08475 23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY 102 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666778888889999976531111 11222334555556666666665555555555
Q ss_pred HH
Q 024177 158 RK 159 (271)
Q Consensus 158 r~ 159 (271)
..
T Consensus 103 ~~ 104 (167)
T PRK08475 103 IL 104 (167)
T ss_pred HH
Confidence 44
No 24
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=87.83 E-value=6.4 Score=34.10 Aligned_cols=22 Identities=9% Similarity=-0.167 Sum_probs=12.5
Q ss_pred hhHhhHHHHHHHHHHhhhcchh
Q 024177 97 TGAFIIPASVYFLLKKFILKPY 118 (271)
Q Consensus 97 ~~a~v~P~~~~~~~~~~v~~P~ 118 (271)
||.++.-+++++++.+|.+.|.
T Consensus 30 ~~~~inflil~~iL~~f~~~~~ 51 (184)
T PRK13455 30 FVVTLAFLLFIGILVYFKVPGM 51 (184)
T ss_pred HHHHHHHHHHHHHHHHHhccHH
Confidence 3445555566666666655553
No 25
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=87.81 E-value=4.5 Score=32.38 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=17.5
Q ss_pred hhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 96 ATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 96 ~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
.||-++.=+++++++.+|+++|..+
T Consensus 2 l~~~~i~Flil~~~l~~~~~~pi~~ 26 (132)
T PF00430_consen 2 LFWQLINFLILFFLLNKFLYKPIKK 26 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556778888888888765
No 26
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=87.55 E-value=7.3 Score=33.78 Aligned_cols=30 Identities=17% Similarity=-0.046 Sum_probs=18.1
Q ss_pred CChhhhhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 91 FSSFFATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 91 ~~~~~~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
+++....+-++-=+++++++++|.++|...
T Consensus 22 ~n~~~~~~~~Inflill~lL~~fl~kPI~~ 51 (184)
T CHL00019 22 FNTDILETNLINLSVVLGVLIYFGKGVLSD 51 (184)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 444333333444455677777888899765
No 27
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=85.89 E-value=6.1 Score=39.24 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=16.8
Q ss_pred hhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 96 ATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 96 ~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
++|-.+.=+++++++++|+++|..+
T Consensus 4 ~i~qlInFlIl~~lL~kfl~~Pi~~ 28 (445)
T PRK13428 4 FIGQLIGFAVIVFLVWRFVVPPVRR 28 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444556777788888888665
No 28
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=85.06 E-value=7.9 Score=31.98 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=11.5
Q ss_pred HHHHHHHhhhcchhhh
Q 024177 105 SVYFLLKKFILKPYYL 120 (271)
Q Consensus 105 ~~~~~~~~~v~~P~~~ 120 (271)
++++++.+|+++|..+
T Consensus 7 il~~il~~~~~~pi~~ 22 (147)
T TIGR01144 7 LLVWFCMKYVWPPLAK 22 (147)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677888888665
No 29
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.42 E-value=38 Score=34.28 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=66.2
Q ss_pred ceeeEEEEccccceEEEEEEEecCCCcceeEeEEEeeeeeEEEeeceeeeccc--eeEEEEEEEeeeeeEEEE-------
Q 024177 2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEF--STIRMLYSVGIQGIFWKF------- 72 (271)
Q Consensus 2 sw~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~~~gt~g~~~e~g~~rkvs~~--s~~g~~v~ig~~Gv~lkl------- 72 (271)
+|+..+..| ..+.++..+.+.-. ..++..+..+|+-++-..+...++..+. +.+-+++.+|.-|+...+
T Consensus 255 ~g~i~l~~g-~~Sa~ttt~~~~~~-~~s~a~~~~i~sp~~~~~~~y~~k~k~~~es~~kl~~k~gt~G~~ve~g~~RkvS 332 (546)
T KOG0718|consen 255 SGSIALNRG-IQSAMTTTWVHMKE-NPSLAVNLEIGSPHMYAGIAYTYKLKNATESQIKLSTKMGTFGLQVEYGTERKVS 332 (546)
T ss_pred cceEEechh-hhhhheeeeeeccc-cccceeeeEecCCcceeeeeeeeecCccccceeEEEEEeeeeeEEeeccccceee
Confidence 688888889 55667777765432 2455666677665555556667777766 666666667666655422
Q ss_pred EEEEcCeE--EEEE--EEeec-------CCChhhhhhHhhHHHHHHHHHH
Q 024177 73 ELHRAGQK--LVVP--ILLSR-------HFSSFFATGAFIIPASVYFLLK 111 (271)
Q Consensus 73 ~~~R~gQ~--~~~P--I~Ls~-------~~~~~~~~~a~v~P~~~~~~~~ 111 (271)
++++.+-. +.+| |++.= .+.+.+.++.-++|.+++.++-
T Consensus 333 ryStv~~~~svgvpsgi~~k~~~~R~~Q~~~~pI~l~d~~~p~avfya~v 382 (546)
T KOG0718|consen 333 RYSTVGANVSVGVPSGITLKVKLLRAGQKYSFPIHLCDELLPSAVFYALV 382 (546)
T ss_pred eceeEEEEEEEcCCcceEEEEeeeccCcEEEEEEEeechhhhhhhhhhhh
Confidence 23333333 3345 33332 2455677888899988776653
No 30
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=82.71 E-value=15 Score=31.35 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=14.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 131 MEKTSAQVQEAKAAAQKAQQLLQNVANR 158 (271)
Q Consensus 131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~r 158 (271)
+.+.++++..+|.||.+.++-.+..++.
T Consensus 64 ~~~~e~~L~~A~~ea~~Ii~~A~~~a~~ 91 (167)
T PRK14475 64 LADVKAEREEAERQAAAMLAAAKADARR 91 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566555555544444443
No 31
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=79.90 E-value=19 Score=30.76 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=16.1
Q ss_pred hhhHhhHHHHHHHHHHhhhcchhhh
Q 024177 96 ATGAFIIPASVYFLLKKFILKPYYL 120 (271)
Q Consensus 96 ~~~a~v~P~~~~~~~~~~v~~P~~~ 120 (271)
.||-++.=++.++++.+|+++|...
T Consensus 9 ~~~~~i~F~ill~ll~~~~~~pi~~ 33 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFVWKPILK 33 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4555555455666777788888764
No 32
>PF13568 OMP_b-brl_2: Outer membrane protein beta-barrel domain
Probab=79.46 E-value=26 Score=28.41 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=47.5
Q ss_pred ceeeEEEEccccceEEEEEEEecCCCcceeEeEEEeeeeeEEEeeceeeeccceeEEEEEEEeeeeeEEEE---------
Q 024177 2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRMLYSVGIQGIFWKF--------- 72 (271)
Q Consensus 2 sw~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~~~gt~g~~~e~g~~rkvs~~s~~g~~v~ig~~Gv~lkl--------- 72 (271)
.|++.+.+|+....++... ........+ .|..+.+.+..+++++-.++.++.....+.....
T Consensus 8 ~~~~G~~~G~~~~~~~~~~--~~~~~~~~~-------~g~~~g~~~~~~~~~~~~~~~gl~y~~~~~~~~~~~~~~~~~~ 78 (173)
T PF13568_consen 8 RFSIGLKAGFNFSNFSNDN--DNNSSYKPG-------IGFSIGLFFNYPLNNRFSVQTGLSYSQRGYNFNDDDYDENGQD 78 (173)
T ss_pred eEEEEEEEEEEeecceecc--ccccccCcc-------EeEEEEEEEEEEeCCcEEEEEEEEEEEeeeEEEccccccCCcc
Confidence 4667777776654444411 001112222 3445556677788887777777666655444322
Q ss_pred -EEEEcCeEEEEEEEeecCCCh
Q 024177 73 -ELHRAGQKLVVPILLSRHFSS 93 (271)
Q Consensus 73 -~~~R~gQ~~~~PI~Ls~~~~~ 93 (271)
+.+..-+-+.|||++-=.+..
T Consensus 79 ~~~~~~~~yl~iPl~~~y~~~~ 100 (173)
T PF13568_consen 79 YKYKFKLHYLEIPLLLRYNFGK 100 (173)
T ss_pred eEEEEEEEEEEEEEEEEEEECc
Confidence 355557788999998766544
No 33
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=78.02 E-value=3.5 Score=33.68 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=15.5
Q ss_pred HhhHHHHHHHHHHhhhcchhhhH
Q 024177 99 AFIIPASVYFLLKKFILKPYYLK 121 (271)
Q Consensus 99 a~v~P~~~~~~~~~~v~~P~~~r 121 (271)
..++|+++++++-+|++||.++|
T Consensus 4 ~~il~~vv~~~i~yf~iRPQkKr 26 (113)
T PRK06531 4 PTIIMFVVMLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHHHHHHHHHheechHHHH
Confidence 35567777777766777877644
No 34
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=77.78 E-value=1.3 Score=41.06 Aligned_cols=19 Identities=47% Similarity=0.823 Sum_probs=16.6
Q ss_pred cc-CCCCCCCceEEEEEEEC
Q 024177 230 FC-DSCPGEPKQLYVEYTYG 248 (271)
Q Consensus 230 F~-DP~~g~~K~L~V~Y~f~ 248 (271)
|= |||||..|.|.|.|.--
T Consensus 111 F~~DPCPgT~KYLev~Y~Cv 130 (265)
T KOG4729|consen 111 FGDDPCPGTSKYLEVQYGCV 130 (265)
T ss_pred cCCCCCCCchhheEEEeccC
Confidence 55 99999999999999754
No 35
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=73.00 E-value=5.6 Score=31.63 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=17.8
Q ss_pred hhhHhhHHHHHHHHHHhh-hcchhhhH
Q 024177 96 ATGAFIIPASVYFLLKKF-ILKPYYLK 121 (271)
Q Consensus 96 ~~~a~v~P~~~~~~~~~~-v~~P~~~r 121 (271)
..+.+++|+++++++-+| ++||-++|
T Consensus 7 ~~~~~ll~~vl~~~ifyFli~RPQrKr 33 (97)
T COG1862 7 SGLVLLLPLVLIFAIFYFLIIRPQRKR 33 (97)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 456778888877777666 66776544
No 36
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=64.25 E-value=24 Score=31.29 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=0.0
Q ss_pred CccCCCCCC
Q 024177 229 GFCDSCPGE 237 (271)
Q Consensus 229 GF~DP~~g~ 237 (271)
|=|||..|+
T Consensus 164 ~~yNPL~G~ 172 (190)
T PF06936_consen 164 SDYNPLTGD 172 (190)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 447887765
No 37
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=64.03 E-value=12 Score=30.30 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=12.9
Q ss_pred HhhHHHHHH-HHHHhhhcchhhh
Q 024177 99 AFIIPASVY-FLLKKFILKPYYL 120 (271)
Q Consensus 99 a~v~P~~~~-~~~~~~v~~P~~~ 120 (271)
.+++|++++ +++.++++||.++
T Consensus 5 ~~ll~lv~i~~i~yF~~iRPQkK 27 (109)
T PRK05886 5 VLFLPFLLIMGGFMYFASRRQRK 27 (109)
T ss_pred HHHHHHHHHHHHHHHHHccHHHH
Confidence 445676654 4555666777643
No 38
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=61.21 E-value=15 Score=28.29 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=13.4
Q ss_pred HHHhcCceEEEEE-EecCCCC
Q 024177 162 KQLEIGGLIITKA-VYGARKA 181 (271)
Q Consensus 162 ~E~~~~GLVI~~A-~YG~~~~ 181 (271)
.+.++|==|++.+ .||...+
T Consensus 36 ~~L~~Gd~VvT~gGi~G~V~~ 56 (84)
T TIGR00739 36 ESLKKGDKVLTIGGIIGTVTK 56 (84)
T ss_pred HhCCCCCEEEECCCeEEEEEE
Confidence 3446666677766 8998754
No 39
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=57.81 E-value=1.2e+02 Score=26.01 Aligned_cols=18 Identities=0% Similarity=0.121 Sum_probs=9.8
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 024177 131 MEKTSAQVQEAKAAAQKA 148 (271)
Q Consensus 131 r~~~~~~i~~~R~eA~~a 148 (271)
++++++++.++|+||.+.
T Consensus 64 ~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 64 NKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666666655543
No 40
>PF02462 Opacity: Opacity family porin protein; InterPro: IPR003394 Pathogenic Neisseria spp. possess a repertoire of phase-variable opacity proteins that mediate various pathogen/host cell interactions []. These proteins are integral membrane proteins related to other porins and the Haemophilus influenzae OpA protein.; GO: 0015288 porin activity, 0016020 membrane; PDB: 1P4T_A.
Probab=56.70 E-value=1e+02 Score=25.94 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=36.3
Q ss_pred ceEEEEEEEecCCCcceeEeEEEeeeeeEEEeecee--ee--ccceeEEEEEEEeee-----eeEE--EEEEEEc
Q 024177 14 FGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGR--KI--SEFSTIRMLYSVGIQ-----GIFW--KFELHRA 77 (271)
Q Consensus 14 ~~~s~~y~r~~~~~~~~r~~~~~gt~g~~~e~g~~r--kv--s~~s~~g~~v~ig~~-----Gv~l--kl~~~R~ 77 (271)
.++|+=|-.++.++.+==+|+|+++.++........ .= ..-+++|+++..|++ .++| =.+.+++
T Consensus 37 lGlSAIYDF~~ns~fKPYiGaRva~n~~~~~~~~~~~~~~~~~s~tk~G~G~~AGv~y~itpnltLd~GyrYn~~ 111 (132)
T PF02462_consen 37 LGLSAIYDFDLNSKFKPYIGARVAYNHIKYTVDSKYPYKESHNSITKLGLGALAGVGYDITPNLTLDAGYRYNYW 111 (132)
T ss_dssp EEEEEEEE---SSSEEEEEEEEEEEE----EEEEEETTEEE-E---EEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccEEEEEeccCCCccceeeEeEEeecccccccccccccccccccccccceeeEEEEeEecCCCeEEecceEEeec
Confidence 678888888888776666999999877654433221 11 234689998888875 4554 4455665
No 41
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=55.92 E-value=82 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=29.1
Q ss_pred CcceeEeEEEeeee--eEEEeeceeeeccceeEEEEEEEe
Q 024177 27 KSHGRIQGRLGSTA--LELEVGGGRKISEFSTIRMLYSVG 64 (271)
Q Consensus 27 ~~~~r~~~~~gt~g--~~~e~g~~rkvs~~s~~g~~v~ig 64 (271)
..++.+++-+|+++ -.+.+|+.++++++..+.++++.+
T Consensus 24 ~~~~~~~~g~G~y~g~~A~A~G~~~~~~~~~~~~~~~s~~ 63 (78)
T PF03895_consen 24 DGKFSVGVGVGTYRGESAVAVGASYRPNENVMVNAGVSYG 63 (78)
T ss_dssp TT-EEEEEEEEEETTEEEEEEEEEEE-TSSEEEEEEEEEE
T ss_pred CCcEEEEEEEEeeCCcccEEEEEEEEeCCCEEEEEEEEec
Confidence 46778888888877 458889999999999888887753
No 42
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=55.75 E-value=89 Score=23.75 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=10.7
Q ss_pred HHHHHHHhhhcchhhhH
Q 024177 105 SVYFLLKKFILKPYYLK 121 (271)
Q Consensus 105 ~~~~~~~~~v~~P~~~r 121 (271)
++|-+.+.-.++|+...
T Consensus 24 vaYGa~r~~~l~~~~e~ 40 (81)
T KOG4326|consen 24 VAYGAFRLRQLREYHED 40 (81)
T ss_pred HHHhHHHHHHHhHHHHH
Confidence 56777776566666543
No 43
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=55.59 E-value=38 Score=33.80 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 024177 136 AQVQEAKAAAQK 147 (271)
Q Consensus 136 ~~i~~~R~eA~~ 147 (271)
.++..+|+||+.
T Consensus 348 k~~~~~~~~~~~ 359 (429)
T PRK00247 348 KEIAQKRRAAER 359 (429)
T ss_pred HHHHHHHHHHHH
Confidence 344444555553
No 44
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=54.90 E-value=1.5e+02 Score=26.21 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=39.2
Q ss_pred ceeeEEEEccccceEEEEEEEecCCCcceeEeEEEee----eeeEEEeeceeeeccceeEEEE
Q 024177 2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGS----TALELEVGGGRKISEFSTIRML 60 (271)
Q Consensus 2 sw~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~~~gt----~g~~~e~g~~rkvs~~s~~g~~ 60 (271)
.|.+.++++.....+.++|.+++.+. +.+|+.+.. -...+++|+..++.+-+++.+.
T Consensus 176 ~~~~~~~~~~~~~~l~~sy~~k~~~~--~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~k 236 (273)
T PF01459_consen 176 DYTASATLSNNFGTLTASYFQKVNDK--LQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAK 236 (273)
T ss_dssp TEEEEEEE-ETTTEEEEEEEEESSTT--EEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEE
T ss_pred eEEEEEEEcCCCCEEEEEEEEEeccc--eeeeeeeeecccCCCceEEEEEEEEcCcccEEEEE
Confidence 46777888766778999999999744 445555542 2355778888888887766665
No 45
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=53.75 E-value=5.2 Score=29.10 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=14.3
Q ss_pred cccCCCCccCCCCCC--CceEEE
Q 024177 223 KKSGIMGFCDSCPGE--PKQLYV 243 (271)
Q Consensus 223 sKs~L~GF~DP~~g~--~K~L~V 243 (271)
..=..+|||||.+.. +|.+.+
T Consensus 24 k~iE~lG~YdP~~~~~~~~~~~l 46 (62)
T PF00886_consen 24 KFIEELGFYDPIPNPDEEKQIKL 46 (62)
T ss_dssp SESEEEEEEETTSSSSSSTSEEE
T ss_pred chhhccceEcCCCCCCCceeEEe
Confidence 334579999999874 455543
No 46
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=52.54 E-value=1.7e+02 Score=26.88 Aligned_cols=56 Identities=5% Similarity=0.062 Sum_probs=36.6
Q ss_pred ceeeEEEEccccceEEEEEEEecCCCcceeEeEEEe----eeeeEEEeeceeeeccceeEEEE
Q 024177 2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLG----STALELEVGGGRKISEFSTIRML 60 (271)
Q Consensus 2 sw~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~~~g----t~g~~~e~g~~rkvs~~s~~g~~ 60 (271)
-|++.++++. ...+.++|-+++++. +.+|+.+. +....+++|+..++.+.+.+.+.
T Consensus 172 d~~~s~~l~~-~~~l~~Sy~hkvs~~--~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkak 231 (274)
T cd07303 172 EFQAHTNVND-GTEFGGSIYHKVNDK--LEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSAS 231 (274)
T ss_pred CeEEEEEEcC-CCeEEEEEEEEcCCc--eEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEE
Confidence 3667777766 367999999999864 33444443 23355777777777776655554
No 47
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=49.93 E-value=11 Score=28.67 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=11.1
Q ss_pred cccCCCCccCCCCCC
Q 024177 223 KKSGIMGFCDSCPGE 237 (271)
Q Consensus 223 sKs~L~GF~DP~~g~ 237 (271)
..=..+|||||.+..
T Consensus 31 k~iE~lG~ydP~~~~ 45 (75)
T PRK00040 31 RFIERVGFYNPLAKP 45 (75)
T ss_pred CceeEEeecCCCCCC
Confidence 344579999998754
No 48
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=48.57 E-value=32 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=14.9
Q ss_pred hhHhhHHHHHHHHHH-hhhcchhhhH
Q 024177 97 TGAFIIPASVYFLLK-KFILKPYYLK 121 (271)
Q Consensus 97 ~~a~v~P~~~~~~~~-~~v~~P~~~r 121 (271)
.+..++|+++.+++- ++.+||.+++
T Consensus 17 ~~~~ll~lvii~~i~yf~~~RpqkK~ 42 (106)
T PRK05585 17 GLSSLLPLVVFFAIFYFLIIRPQQKR 42 (106)
T ss_pred cHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 355667877666654 4455776544
No 49
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=48.57 E-value=57 Score=30.61 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=7.3
Q ss_pred hhhhHHHHHHHH
Q 024177 117 PYYLKREKQKAL 128 (271)
Q Consensus 117 P~~~r~~~~~~~ 128 (271)
|+++|++++-++
T Consensus 93 p~~krkek~~ie 104 (279)
T PF07271_consen 93 PIYKRKEKRMIE 104 (279)
T ss_pred hhhhhhHHHHHH
Confidence 888765544444
No 50
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=48.36 E-value=11 Score=28.80 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=10.8
Q ss_pred cccCCCCccCCCCC
Q 024177 223 KKSGIMGFCDSCPG 236 (271)
Q Consensus 223 sKs~L~GF~DP~~g 236 (271)
..=..+|||||++.
T Consensus 30 k~iE~lG~YnP~~~ 43 (78)
T TIGR00002 30 RYIEELGFYNPLTK 43 (78)
T ss_pred CceeEeeeccCCCC
Confidence 44567999999874
No 51
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=47.80 E-value=1.3e+02 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024177 143 AAAQKAQQLLQNVANRKRNKQLE 165 (271)
Q Consensus 143 ~eA~~a~~Lm~~~a~r~~~~E~~ 165 (271)
.|...+..-+++.-.|+..+|..
T Consensus 44 ~Ek~~~~~qvkn~~vrqknee~~ 66 (87)
T PF10883_consen 44 TEKAVAETQVKNAKVRQKNEENT 66 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhh
Confidence 33334444556655555555543
No 52
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=47.24 E-value=1.2e+02 Score=25.83 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=12.6
Q ss_pred hcchhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 024177 114 ILKPYYLKREKQKALENMEKTSAQVQEAKA 143 (271)
Q Consensus 114 v~~P~~~r~~~~~~~~~r~~~~~~i~~~R~ 143 (271)
++.-+.-+.-..-..++++.....+.++..
T Consensus 34 lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~ 63 (173)
T PRK13453 34 LLKKFAWGPLKDVMDKRERDINRDIDDAEQ 63 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433
No 53
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=43.86 E-value=72 Score=28.34 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=0.0
Q ss_pred HHHHHHHHh
Q 024177 104 ASVYFLLKK 112 (271)
Q Consensus 104 ~~~~~~~~~ 112 (271)
+++|+++.+
T Consensus 45 I~ly~l~qk 53 (190)
T PF06936_consen 45 ILLYLLWQK 53 (190)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 345666655
No 54
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=43.75 E-value=2.3e+02 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=19.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 128 LENMEKTSAQVQEAKAAAQKAQQLLQNVANRK 159 (271)
Q Consensus 128 ~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~ 159 (271)
.+..++.++.+.++|.||.+.++--+..++..
T Consensus 104 e~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~ 135 (204)
T PRK09174 104 DAAVAAYEQELAQARAKAHSIAQAAREAAKAK 135 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777777666555555443
No 55
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=40.93 E-value=12 Score=29.64 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=11.1
Q ss_pred cccCCCCccCCCCCC
Q 024177 223 KKSGIMGFCDSCPGE 237 (271)
Q Consensus 223 sKs~L~GF~DP~~g~ 237 (271)
..=..+|||||++.+
T Consensus 31 k~iE~lG~YnP~~~~ 45 (94)
T PRK14524 31 AYIESLGYYNPLKEP 45 (94)
T ss_pred CceeEeeecCCCCCC
Confidence 345579999999643
No 56
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=40.81 E-value=1.4e+02 Score=23.30 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 123 EKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNK 162 (271)
Q Consensus 123 ~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~ 162 (271)
.+....+.++.....+.++|.||+..++..+...+.....
T Consensus 16 A~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~ 55 (105)
T PF03179_consen 16 AQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKE 55 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667788888999998888888777765544
No 57
>PRK09098 type III secretion system protein HrpB; Validated
Probab=39.20 E-value=2.1e+02 Score=25.98 Aligned_cols=24 Identities=8% Similarity=-0.096 Sum_probs=17.4
Q ss_pred ecCCChhhhhhHhhHHHHHHHHHH
Q 024177 88 SRHFSSFFATGAFIIPASVYFLLK 111 (271)
Q Consensus 88 s~~~~~~~~~~a~v~P~~~~~~~~ 111 (271)
..++-|...|...+-==.+|+.++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~~~~~~ 38 (233)
T PRK09098 15 SCDVIPREAFATVLALDAALAAVH 38 (233)
T ss_pred CcccccHHHHHHHHHHHHHHHHHH
Confidence 345777888887777777888775
No 58
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=39.17 E-value=1.7e+02 Score=26.70 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 131 MEKTSAQVQEAKAAAQKAQQLLQNVANRKR 160 (271)
Q Consensus 131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~ 160 (271)
+++.++++.+.+++|.+.++-.+..+++.+
T Consensus 59 ~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~ 88 (250)
T PRK14474 59 AERYRQKQQSLEQQRASFMAQAQEAADEQR 88 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666665555555555443
No 59
>PRK14523 rpsP 30S ribosomal protein S16; Provisional
Probab=38.41 E-value=20 Score=30.29 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=11.5
Q ss_pred cccCCCCccCCCCCC
Q 024177 223 KKSGIMGFCDSCPGE 237 (271)
Q Consensus 223 sKs~L~GF~DP~~g~ 237 (271)
..=..+|||||++..
T Consensus 31 K~IE~LG~YdP~~~~ 45 (137)
T PRK14523 31 RFIERVGYYNPMARG 45 (137)
T ss_pred CceeeeeecCCCCCC
Confidence 445679999999754
No 60
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.04 E-value=2.7e+02 Score=23.83 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=17.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 128 LENMEKTSAQVQEAKAAAQKAQQLLQNVANR 158 (271)
Q Consensus 128 ~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r 158 (271)
++..+++++.+.++|+||.+.++==+..+++
T Consensus 55 ~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~ 85 (154)
T PRK06568 55 ALLFEQTNAQIKKLETLRSQMIEESNEVTKK 85 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777776655444444443
No 61
>KOG3419 consensus Mitochondrial/chloroplast ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=36.70 E-value=18 Score=29.36 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=11.7
Q ss_pred cccCCCCccCCCCCCC
Q 024177 223 KKSGIMGFCDSCPGEP 238 (271)
Q Consensus 223 sKs~L~GF~DP~~g~~ 238 (271)
.--.-+|||||.|+.+
T Consensus 32 k~iE~lG~ydPlp~~~ 47 (112)
T KOG3419|consen 32 KPIEQLGTYDPLPNQD 47 (112)
T ss_pred CchhheecccCCCCCC
Confidence 3345699999999653
No 62
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=35.38 E-value=24 Score=27.61 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=10.7
Q ss_pred cccCCCCccCCCCC
Q 024177 223 KKSGIMGFCDSCPG 236 (271)
Q Consensus 223 sKs~L~GF~DP~~g 236 (271)
..-..+|||||+..
T Consensus 32 k~IE~lG~YnP~~~ 45 (88)
T PRK14525 32 KYLEDVGIYDPTKR 45 (88)
T ss_pred CceeEEecccCCCC
Confidence 44567999999864
No 63
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=34.79 E-value=37 Score=27.49 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.9
Q ss_pred eeeEEEEEEEEcCeEEEEEEEeec
Q 024177 66 QGIFWKFELHRAGQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~gQ~~~~PI~Ls~ 89 (271)
.-|.++|.+...+|.|-+|++|||
T Consensus 80 p~v~i~F~i~~~~~HyHvPlllSP 103 (112)
T TIGR02962 80 PEVEVVFTIADPGQHYHVPLLLSP 103 (112)
T ss_pred cceEEEEEECCCCCCEEEeEEecC
Confidence 468889999999999999999998
No 64
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.12 E-value=1.7e+02 Score=20.62 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=4.2
Q ss_pred eEEEEEEEee
Q 024177 79 QKLVVPILLS 88 (271)
Q Consensus 79 Q~~~~PI~Ls 88 (271)
|.+.+.++..
T Consensus 5 ~~V~v~~~~~ 14 (68)
T PF06305_consen 5 QPVTVNFLFG 14 (68)
T ss_pred ceEEEEEEee
Confidence 3444444433
No 65
>PF14981 FAM165: FAM165 family
Probab=33.77 E-value=84 Score=21.88 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 024177 105 SVYFLLK 111 (271)
Q Consensus 105 ~~~~~~~ 111 (271)
++|++++
T Consensus 22 laFAgvK 28 (51)
T PF14981_consen 22 LAFAGVK 28 (51)
T ss_pred HHHhhHH
Confidence 3444444
No 66
>PLN03086 PRLI-interacting factor K; Provisional
Probab=33.68 E-value=1.6e+02 Score=30.53 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=10.0
Q ss_pred EEEEECCeeEEEEEcCCc
Q 024177 243 VEYTYGGNRYEVFVDDYE 260 (271)
Q Consensus 243 V~Y~f~~~~h~v~v~D~e 260 (271)
|...|++..++..|.+-+
T Consensus 222 i~i~~~~~~y~~~V~ev~ 239 (567)
T PLN03086 222 LVVNYGQLTYKLKVLELK 239 (567)
T ss_pred EEEecCCEEEEEEEEEEc
Confidence 333445667766665544
No 67
>COG3814 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.39 E-value=34 Score=29.16 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.0
Q ss_pred ccCCCCccCCCCC
Q 024177 224 KSGIMGFCDSCPG 236 (271)
Q Consensus 224 Ks~L~GF~DP~~g 236 (271)
.+-|.|||||...
T Consensus 98 f~Al~~FyDpsvn 110 (157)
T COG3814 98 FDALRGFYDPSVN 110 (157)
T ss_pred hHHhhhhcCCCcc
Confidence 3568999999753
No 68
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=33.07 E-value=29 Score=27.14 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=13.4
Q ss_pred cccCCCCccCCCCCCCceEE
Q 024177 223 KKSGIMGFCDSCPGEPKQLY 242 (271)
Q Consensus 223 sKs~L~GF~DP~~g~~K~L~ 242 (271)
..=..+|||||..+.+..++
T Consensus 31 r~IE~lG~ynP~~~~~~~v~ 50 (87)
T COG0228 31 RFIERLGTYNPLLGKEERVK 50 (87)
T ss_pred cchhhhcccCCCCCccceEE
Confidence 45568999999775444443
No 69
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=32.57 E-value=43 Score=27.19 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.1
Q ss_pred eeeEEEEEEEEcCeEEEEEEEeec
Q 024177 66 QGIFWKFELHRAGQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~gQ~~~~PI~Ls~ 89 (271)
.-|.+.|.++..+|.|-+|++|||
T Consensus 80 p~V~i~F~i~~~~~HYHvPlLlSP 103 (112)
T cd05822 80 PEVEVRFTITDPTEHYHVPLLLSP 103 (112)
T ss_pred eeeEEEEEECCCCCCEEEeEEecC
Confidence 468889999999999999999998
No 70
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=32.56 E-value=3.9e+02 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=29.8
Q ss_pred ceeeEEEEccccceEEEEEEEecCCCcceeEeEEEe----eeeeEEEeeceeeec
Q 024177 2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLG----STALELEVGGGRKIS 52 (271)
Q Consensus 2 sw~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~~~g----t~g~~~e~g~~rkvs 52 (271)
.|+++++++.. ..+.++|.+++++. +.+|+.+. +....+.+|+...+.
T Consensus 178 d~~~s~~l~~~-~~l~asY~~kvs~~--l~lG~el~~~~~~~es~~tvg~~y~~~ 229 (279)
T cd07305 178 NWIASGQLGAQ-GGLHLSYYRKLSDK--LQLGVELELNLRTRESTATLGYQYDFR 229 (279)
T ss_pred CEEEEEEEcCC-CeEEEEEEEEcccc--eEeeeeeeecccCCceeEEEEEEEEcC
Confidence 47788888876 57899999999874 33443333 222345555554444
No 71
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=32.21 E-value=1.2e+02 Score=30.17 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 024177 123 EKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGG 168 (271)
Q Consensus 123 ~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~~~~G 168 (271)
.+++..+.+++-...+++--+.-.+||+.|++.....+.+|.+|.-
T Consensus 361 HqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsq 406 (593)
T KOG4807|consen 361 HQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQ 406 (593)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444455555556678999999999999999998865
No 72
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=31.79 E-value=19 Score=24.10 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=11.0
Q ss_pred CCcc-CCCCCCCceE
Q 024177 228 MGFC-DSCPGEPKQL 241 (271)
Q Consensus 228 ~GF~-DP~~g~~K~L 241 (271)
-||| ||..||.-+|
T Consensus 23 ngfYIdPflgek~hL 37 (41)
T PF13119_consen 23 NGFYIDPFLGEKYHL 37 (41)
T ss_pred Cceeecccccceeec
Confidence 5899 9998886554
No 73
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=31.72 E-value=1.2e+02 Score=22.90 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=22.8
Q ss_pred hhhhhHhhHHHHHHHHHHhhhcchhhhH
Q 024177 94 FFATGAFIIPASVYFLLKKFILKPYYLK 121 (271)
Q Consensus 94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~r 121 (271)
..+..|+++.+.+.++++.++..|+.++
T Consensus 19 ~~i~~a~~ls~~~~~~~kf~v~~pRKk~ 46 (73)
T PF02937_consen 19 RHIVVAFVLSLGVAAAYKFGVAEPRKKA 46 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4577888899999999998888887654
No 74
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=31.26 E-value=4.3e+02 Score=24.59 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=42.4
Q ss_pred cceEEEEEEEecCCCcceeEeEEEeeeeeEE-EeeceeeeccceeEEEEEEEe--eeeeEEEEEE
Q 024177 13 SFGASAHYTHRFSKKSHGRIQGRLGSTALEL-EVGGGRKISEFSTIRMLYSVG--IQGIFWKFEL 74 (271)
Q Consensus 13 ~~~~s~~y~r~~~~~~~~r~~~~~gt~g~~~-e~g~~rkvs~~s~~g~~v~ig--~~Gv~lkl~~ 74 (271)
....++...+++.+..+.+.....+..+... ++..+.+++++.++.+.+.-+ -+|+.+.++|
T Consensus 313 ~~~~~~~~gk~l~~~l~i~~~~~~~~~~~~~~~~~l~y~l~~~~~l~~~~~~~~~~~g~~l~y~~ 377 (379)
T PF04357_consen 313 ESDTSVTVGKYLSDRLYISYQFGVDLGGSQTGEFSLEYRLNPNLSLRGSSDSGNTSQGVDLIYRK 377 (379)
T ss_pred cCceEEEEEEecCCCEEEEEEEeecCCCCceEEEEEEEEEcCCEEEEEEEEcCCCceEEEEEEEE
Confidence 3567778888887667766665566555544 788889999999888887444 2255554443
No 75
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=31.06 E-value=54 Score=26.57 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.9
Q ss_pred eeeEEEEEEEEcCeEEEEEEEeec
Q 024177 66 QGIFWKFELHRAGQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~gQ~~~~PI~Ls~ 89 (271)
+-|.+.|.++-.+|.|-+|++|||
T Consensus 81 p~V~I~F~v~d~~~HYHvPLLlSP 104 (112)
T PF00576_consen 81 PEVEIRFTVKDPQQHYHVPLLLSP 104 (112)
T ss_dssp SEEEEEEEESTTTSEEEEEEEEET
T ss_pred ecceEEEEECCCCCcEEEEEEecC
Confidence 358889999999999999999998
No 76
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=30.64 E-value=77 Score=25.45 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=4.8
Q ss_pred hhcchhhhH
Q 024177 113 FILKPYYLK 121 (271)
Q Consensus 113 ~v~~P~~~r 121 (271)
+++.|..|+
T Consensus 16 ~v~~pl~r~ 24 (117)
T TIGR03142 16 FLLLPLLRR 24 (117)
T ss_pred HHHHHHhcC
Confidence 455666543
No 77
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=30.33 E-value=27 Score=28.77 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=10.8
Q ss_pred cccCCCCccCCCCC
Q 024177 223 KKSGIMGFCDSCPG 236 (271)
Q Consensus 223 sKs~L~GF~DP~~g 236 (271)
..=..+|||||+..
T Consensus 32 k~IE~lG~YdP~~~ 45 (116)
T PRK14522 32 KYIELLGWYDPHSE 45 (116)
T ss_pred CcceeeeccCCCCC
Confidence 44567999999864
No 78
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=30.09 E-value=2.7e+02 Score=23.22 Aligned_cols=6 Identities=17% Similarity=0.063 Sum_probs=2.1
Q ss_pred Chhhhh
Q 024177 92 SSFFAT 97 (271)
Q Consensus 92 ~~~~~~ 97 (271)
++...|
T Consensus 30 sg~~~~ 35 (130)
T PF06212_consen 30 SGWTMF 35 (130)
T ss_pred CHHHHH
Confidence 333333
No 79
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=29.58 E-value=59 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.592 Sum_probs=11.2
Q ss_pred HhhHHHHHHHHH-Hhhhcchhh
Q 024177 99 AFIIPASVYFLL-KKFILKPYY 119 (271)
Q Consensus 99 a~v~P~~~~~~~-~~~v~~P~~ 119 (271)
..++|+++++++ .++.++|.+
T Consensus 3 ~~li~lv~~~~i~yf~~~rpqk 24 (82)
T PF02699_consen 3 SMLIPLVIIFVIFYFLMIRPQK 24 (82)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhhheecHHH
Confidence 455666555554 344556554
No 80
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=29.54 E-value=55 Score=27.19 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.2
Q ss_pred eeeEEEEEEEEcCeEEEEEEEeec
Q 024177 66 QGIFWKFELHRAGQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~gQ~~~~PI~Ls~ 89 (271)
+=|.++|.++-.++-|-+|++|||
T Consensus 92 ~~V~vrF~iad~~~HYHVPLLlSP 115 (124)
T COG2351 92 DVVPVRFGIADVDEHYHVPLLLSP 115 (124)
T ss_pred ceEEEEEEEcCCCCceeeeeEecC
Confidence 368889999999999999999998
No 81
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=28.98 E-value=3.6e+02 Score=22.88 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 134 TSAQVQEAKAAAQKAQQLLQNVANR 158 (271)
Q Consensus 134 ~~~~i~~~R~eA~~a~~Lm~~~a~r 158 (271)
..+-+.+++++|+...+-+.+.|++
T Consensus 86 a~~ii~~A~~~a~~~~~~~~~~A~~ 110 (175)
T PRK14472 86 ADKIIREGKEYAEKLRAEITEKAHT 110 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 82
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=28.67 E-value=48 Score=27.02 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.2
Q ss_pred eeeEEEEEEEEc-CeEEEEEEEeec
Q 024177 66 QGIFWKFELHRA-GQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~-gQ~~~~PI~Ls~ 89 (271)
.-|.+.|.+... .|.|-+|++|||
T Consensus 80 p~V~i~F~v~d~~~~HYHvPLLlSP 104 (113)
T cd05469 80 EYAEVVFTANDSGHRHYTIALLLSP 104 (113)
T ss_pred ceEEEEEEECCCCCCCEEeCEEecC
Confidence 357788999888 999999999998
No 83
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=28.64 E-value=4.4e+02 Score=23.76 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 131 MEKTSAQVQEAKAAAQKAQQLLQNVAN 157 (271)
Q Consensus 131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~ 157 (271)
+++.++++.++++||.+.++-.+..++
T Consensus 59 ~~e~e~~l~~a~~ea~~i~~~A~~eA~ 85 (246)
T TIGR03321 59 RREYEEKNEELDQQREVLLTKAKEEAQ 85 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556555555554444444
No 84
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=28.01 E-value=4.6e+02 Score=24.73 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=6.4
Q ss_pred hhhcchhhhHH
Q 024177 112 KFILKPYYLKR 122 (271)
Q Consensus 112 ~~v~~P~~~r~ 122 (271)
.+-++|-.+++
T Consensus 249 ~~~l~~e~~~K 259 (321)
T PF07946_consen 249 RFKLSPEAKKK 259 (321)
T ss_pred eeeeCHHHHHH
Confidence 45667766543
No 85
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=27.24 E-value=3.7e+02 Score=22.46 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=17.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 131 MEKTSAQVQEAKAAAQKAQQLLQNVANRKR 160 (271)
Q Consensus 131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~ 160 (271)
.++.++.+.++|.||.+.++--+..+++..
T Consensus 62 ~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~ 91 (164)
T PRK14471 62 QADNERLLKEARAERDAILKEAREIKEKMI 91 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667766665555555544443
No 86
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=26.85 E-value=3.2e+02 Score=23.12 Aligned_cols=8 Identities=25% Similarity=0.214 Sum_probs=4.6
Q ss_pred hhhcchhh
Q 024177 112 KFILKPYY 119 (271)
Q Consensus 112 ~~v~~P~~ 119 (271)
+|.++|..
T Consensus 29 k~l~~pi~ 36 (167)
T PRK14475 29 KVLPKALA 36 (167)
T ss_pred HHhHHHHH
Confidence 45567744
No 87
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=26.58 E-value=56 Score=27.40 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.9
Q ss_pred eeeEEEEEEEEcCeEEEEEEEeec
Q 024177 66 QGIFWKFELHRAGQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~gQ~~~~PI~Ls~ 89 (271)
+-|.++|......|.|-+|++|||
T Consensus 105 p~v~v~F~i~~~~~HyHvPlllsP 128 (137)
T PRK15036 105 PEIPVEFHINKVNEHYHVPLLLSQ 128 (137)
T ss_pred ceeEEEEEECCCCCCeEECeEecC
Confidence 468889999999999999999999
No 88
>PLN03059 beta-galactosidase; Provisional
Probab=26.45 E-value=45 Score=35.98 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=14.9
Q ss_pred CCCCCCCceEEEEEEE
Q 024177 232 DSCPGEPKQLYVEYTY 247 (271)
Q Consensus 232 DP~~g~~K~L~V~Y~f 247 (271)
|||+|..|.|.|.|.-
T Consensus 824 DPC~gt~KyL~V~~~C 839 (840)
T PLN03059 824 DPCPDSMKKLSVEAVC 839 (840)
T ss_pred CCCCCceeEEEEEEEe
Confidence 9999999999999963
No 89
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=26.15 E-value=3.4e+02 Score=22.65 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=15.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 131 MEKTSAQVQEAKAAAQKAQQLLQNVANR 158 (271)
Q Consensus 131 r~~~~~~i~~~R~eA~~a~~Lm~~~a~r 158 (271)
.++.++.+.++|.+|.+.++-.+..+++
T Consensus 76 ~~e~e~~L~~A~~ea~~ii~~A~~~a~~ 103 (156)
T CHL00118 76 TKQYEQELSKARKEAQLEITQSQKEAKE 103 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666665555555444444
No 90
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=25.94 E-value=87 Score=26.10 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=45.1
Q ss_pred eEEEEccccceEEEEEEEecCCCcceeEe-------EEEeeeeeEEE-eeceeeeccceeEEEEEEEee----eeeEEEE
Q 024177 5 GELKIGTSSFGASAHYTHRFSKKSHGRIQ-------GRLGSTALELE-VGGGRKISEFSTIRMLYSVGI----QGIFWKF 72 (271)
Q Consensus 5 ~~~~~g~~~~~~s~~y~r~~~~~~~~r~~-------~~~gt~g~~~e-~g~~rkvs~~s~~g~~v~ig~----~Gv~lkl 72 (271)
.++.-|.+..|+...--+...+..-..+| +|++-...+.+ .-+.-|+.=.+.-.. =+.|+ .-+.+-|
T Consensus 28 Ld~s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y~-~a~gv~sFypyvevvf 106 (132)
T KOG3006|consen 28 LDISRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPYY-KALGVESFYPYVEVVF 106 (132)
T ss_pred eecccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEeccccc-ccCCcccccccEEEEE
Confidence 45666777778887776666553222222 33331111111 112223322111110 02333 3577788
Q ss_pred EEEEcCeEEEEEEEeec
Q 024177 73 ELHRAGQKLVVPILLSR 89 (271)
Q Consensus 73 ~~~R~gQ~~~~PI~Ls~ 89 (271)
..+-++|.|-+|.+|+|
T Consensus 107 ~in~s~qhyhvpllLsP 123 (132)
T KOG3006|consen 107 NINDSTQHYHVPLLLSP 123 (132)
T ss_pred EeccCcceEEEeEEecc
Confidence 99999999999999998
No 91
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=25.91 E-value=1.6e+02 Score=30.60 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITKA 174 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~A 174 (271)
+++++.++++..++-.+.=.||++-
T Consensus 502 ~~~re~~~~~m~~~V~~AdvVitNP 526 (609)
T PRK12772 502 QKQREMAMQRMMQEVPKATVVVTNP 526 (609)
T ss_pred HHHHHHHHhhhhccCCCCcEEEECC
Confidence 5777788888888888888999863
No 92
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=25.47 E-value=2.9e+02 Score=20.64 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=15.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 130 NMEKTSAQVQEAKAAAQKAQQLLQNVANRK 159 (271)
Q Consensus 130 ~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~ 159 (271)
.|+..-+.+-++-.+..++++=..+.+..+
T Consensus 39 ~RE~kyq~~I~~lte~~~~~~~~~~dv~ei 68 (71)
T PF10960_consen 39 EREEKYQEQIEKLTEKLNVIEEIKEDVKEI 68 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444566666666555555443
No 93
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=25.18 E-value=2e+02 Score=27.85 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
+++++.++++..++-.+.=.||++
T Consensus 239 ~~~re~a~~~m~~~V~~AdVVItN 262 (347)
T TIGR00328 239 QMQREAARRRMMQEVPKADVVITN 262 (347)
T ss_pred HHHHHHHHhhHhhcCCCCcEEEEC
Confidence 567777778888888888889875
No 94
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.12 E-value=1.9e+02 Score=28.34 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
+++++.+.++...+-.+.=.||++
T Consensus 246 q~~re~a~~~m~~~V~~AdVVItN 269 (386)
T PRK12468 246 QQQRAMARRRMMVDVPKADVIVTN 269 (386)
T ss_pred HHHHHHHHhhHhhcCCCCcEEEEC
Confidence 577788888888888999999986
No 95
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=25.07 E-value=1.6e+02 Score=31.87 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024177 123 EKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEI 166 (271)
Q Consensus 123 ~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~~~ 166 (271)
++++.+...++.+++.+++|++++..+.-=.+-.+|+.++|.++
T Consensus 936 ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~ 979 (1259)
T KOG0163|consen 936 ERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEER 979 (1259)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
No 96
>PRK08156 type III secretion system protein SpaS; Validated
Probab=24.88 E-value=1.9e+02 Score=28.16 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
+++++.+.++..++-.+.=.||++
T Consensus 234 ~~~re~a~~rm~~~Vp~AdVVItN 257 (361)
T PRK08156 234 EAHQEILSEQVKSDIRNSRLIVAN 257 (361)
T ss_pred HHHHHHHHhHHhccCCCCcEEEEC
Confidence 677888888888888999999976
No 97
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.67 E-value=2.7e+02 Score=27.31 Aligned_cols=24 Identities=21% Similarity=0.399 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
++|++.|.|+...+-.+.=+||++
T Consensus 246 q~~re~a~~rm~~~Vp~AdvVItN 269 (363)
T COG1377 246 QMQREIARRRMMSDVPKADVVITN 269 (363)
T ss_pred HHHHHHHHHHHHhhCCCCCEEeeC
Confidence 688999999999999999999986
No 98
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=24.32 E-value=4.2e+02 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 129 ENMEKTSAQVQEAKAAAQKAQQLLQNVANRK 159 (271)
Q Consensus 129 ~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~ 159 (271)
+..++.++++.+++.||.+.++=.+..++..
T Consensus 57 ~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~ 87 (159)
T PRK13461 57 ELKLKNERELKNAKEEGKKIVEEYKSKAENV 87 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666655555555444
No 99
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=24.30 E-value=2.9e+02 Score=27.70 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=28.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024177 128 LENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLE 165 (271)
Q Consensus 128 ~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~~ 165 (271)
.+.++.+...+.+.+++-++|++||+++=++-.++|+-
T Consensus 36 eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 36 EEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677788899999999999987776666653
No 100
>CHL00005 rps16 ribosomal protein S16
Probab=24.15 E-value=33 Score=26.46 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=10.6
Q ss_pred cccCCCCccCCCCC
Q 024177 223 KKSGIMGFCDSCPG 236 (271)
Q Consensus 223 sKs~L~GF~DP~~g 236 (271)
..=..+|||||++.
T Consensus 31 k~iE~lG~YnP~~~ 44 (82)
T CHL00005 31 RDLEKVGFYDPIKN 44 (82)
T ss_pred cceeEeeeccCCCc
Confidence 44567999999863
No 101
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=24.09 E-value=1.1e+02 Score=25.89 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=8.5
Q ss_pred HHhhhcchhhhHH
Q 024177 110 LKKFILKPYYLKR 122 (271)
Q Consensus 110 ~~~~v~~P~~~r~ 122 (271)
+-++++|||..+-
T Consensus 25 ggYiLlRPY~~kl 37 (140)
T PF07543_consen 25 GGYILLRPYFRKL 37 (140)
T ss_pred hHHHHHHHHHHHH
Confidence 3356788987653
No 102
>PF10809 DUF2732: Protein of unknown function (DUF2732); InterPro: IPR020126 This entry represents a group of proteins with no known function
Probab=23.86 E-value=2.8e+02 Score=21.18 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=30.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 128 LENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQL 164 (271)
Q Consensus 128 ~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~ 164 (271)
..+-..++.++..+.--+.++++||+.-+++..++-.
T Consensus 38 S~RL~~LA~hi~~~~ls~~E~~ELLrqEAe~~~n~a~ 74 (77)
T PF10809_consen 38 SSRLDALAAHIANEELSAVEAAELLRQEAERIENQAQ 74 (77)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888999999999999999887644
No 103
>PRK06298 type III secretion system protein; Validated
Probab=23.82 E-value=2.2e+02 Score=27.69 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
+++++.+.++..++-.+.=.||++
T Consensus 240 ~~~re~~~~~m~~~V~~AdVVItN 263 (356)
T PRK06298 240 QIAQEIAYEDTSSQVKHASAVVSN 263 (356)
T ss_pred HHHHHHHHhHHhhcCCCCcEEEEC
Confidence 567777788888888889999986
No 104
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=23.72 E-value=2.1e+02 Score=27.68 Aligned_cols=24 Identities=4% Similarity=0.181 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
+++++.+.++...+-.+.=.||++
T Consensus 239 ~~~re~~~~~m~~~V~~AdVVItN 262 (349)
T PRK12721 239 ELQSEIQSGSLANNVKKSTAVVRN 262 (349)
T ss_pred HHHHHHHHhhhhccCCCCcEEEEc
Confidence 567777788888888888999987
No 105
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=23.71 E-value=2.6e+02 Score=25.24 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHH
Q 024177 104 ASVYFLLKKFILKPYYLKREKQKAL 128 (271)
Q Consensus 104 ~~~~~~~~~~v~~P~~~r~~~~~~~ 128 (271)
+++|.++ .+++.|+.|||--+..+
T Consensus 163 vllFl~~-~~~~EPwkRrRLv~~fe 186 (207)
T PF05546_consen 163 VLLFLVA-QLLVEPWKRRRLVKSFE 186 (207)
T ss_pred HHHHHHH-HHHhCHHHHHHHHHHHH
Confidence 3444444 67899999886544443
No 106
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=23.71 E-value=4.9e+02 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=23.4
Q ss_pred ceeeEEEEccccceEEEEEEEecCCCcceeEeE
Q 024177 2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQG 34 (271)
Q Consensus 2 sw~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~ 34 (271)
+|++++..|.....++++|+.+........+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 40 (323)
T PF01103_consen 8 SLSVSATYGSDSQSLSLSYTNPYFFGDRLSLGF 40 (323)
T ss_pred EEEEEEEEcCceEEEEEEEEEcCCCCCCEEEEE
Confidence 577888888788889999988855444444443
No 107
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=23.61 E-value=1.9e+02 Score=27.74 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
+++++.+.++...+-.+.=.||++
T Consensus 241 ~~~re~~~~~~~~~V~~A~vVItN 264 (343)
T PF01312_consen 241 QLQREMARRRMMAAVPKADVVITN 264 (343)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEE
T ss_pred HHHHHHHhhhhhccCCcCcEEEEC
Confidence 456667788888888888999997
No 108
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.57 E-value=2.5e+02 Score=29.18 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=7.5
Q ss_pred CceEEEEEEecCC
Q 024177 167 GGLIITKAVYGAR 179 (271)
Q Consensus 167 ~GLVI~~A~YG~~ 179 (271)
+|.+-..-+=++.
T Consensus 74 ~g~~~~~~~~~~~ 86 (567)
T PLN03086 74 RGIVFSRIFEAVS 86 (567)
T ss_pred CCeEEEEEeeccc
Confidence 6776665554443
No 109
>COG5612 Predicted integral membrane protein [Function unknown]
Probab=23.41 E-value=2e+02 Score=24.25 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=30.2
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024177 115 LKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQ 153 (271)
Q Consensus 115 ~~P~~~r~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~ 153 (271)
+-|-+|+--++...+.++++++-.++.|++-.+|..||.
T Consensus 47 Lp~~~R~~fRqaLr~arq~~rei~~~arqaRreAa~ll~ 85 (148)
T COG5612 47 LPPENRRGFRQALRAARQKNREITQRARQARREAAALLA 85 (148)
T ss_pred CCHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHhc
Confidence 445555555666777788999999999998888888886
No 110
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.33 E-value=2.2e+02 Score=27.60 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
+++++.+.++..++-.+.=.||++
T Consensus 246 ~~~re~a~~~m~~~V~~AdVVItN 269 (359)
T PRK05702 246 QLQREMARRRMMAAVPKADVVITN 269 (359)
T ss_pred HHHHHHHHhHHhhcCCCCcEEEEC
Confidence 567777888888888889999976
No 111
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.21 E-value=2e+02 Score=32.41 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=11.5
Q ss_pred EEEEEEeecCCChhhhhhHhhHHH
Q 024177 81 LVVPILLSRHFSSFFATGAFIIPA 104 (271)
Q Consensus 81 ~~~PI~Ls~~~~~~~~~~a~v~P~ 104 (271)
+..||+ .-||+.++|...+=+
T Consensus 1350 dqqPI~---nhnpwmllYfIsfll 1370 (1956)
T KOG2302|consen 1350 DQQPIL---NHNPWMLLYFISFLL 1370 (1956)
T ss_pred eeeccc---cCCcHHHHHHHHHHH
Confidence 445665 246776666655433
No 112
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=23.20 E-value=2.1e+02 Score=27.53 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q 024177 150 QLLQNVANRKRNKQLEIGGLIITK 173 (271)
Q Consensus 150 ~Lm~~~a~r~~~~E~~~~GLVI~~ 173 (271)
+++++.+.++..++-.+.=.||++
T Consensus 238 ~~~re~~~~~m~~~V~~AdVVitN 261 (342)
T TIGR01404 238 ELHQEILSEQLKSDVKRSTLVVAN 261 (342)
T ss_pred HHHHHHHHhhhhccCCCCcEEEEC
Confidence 567777888888888889999987
No 113
>PRK12705 hypothetical protein; Provisional
Probab=22.72 E-value=6.9e+02 Score=25.56 Aligned_cols=14 Identities=7% Similarity=-0.055 Sum_probs=7.1
Q ss_pred hhhHhhHHHHHHHH
Q 024177 96 ATGAFIIPASVYFL 109 (271)
Q Consensus 96 ~~~a~v~P~~~~~~ 109 (271)
++++.++|++++..
T Consensus 5 ~~~~~~~~~~~~~~ 18 (508)
T PRK12705 5 ILLVILLLLIGLLL 18 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554433
No 114
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=22.61 E-value=5.9e+02 Score=23.20 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=23.5
Q ss_pred hhhhhHhhHHHHHHHHHHhhhcchhhhH
Q 024177 94 FFATGAFIIPASVYFLLKKFILKPYYLK 121 (271)
Q Consensus 94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~r 121 (271)
.-++.-.++|+.+..+.+++++.|+...
T Consensus 11 ryll~LI~vP~lI~~l~k~~~l~P~v~~ 38 (230)
T PF03040_consen 11 RYLLSLIFVPWLISFLSKKFLLEPWVEY 38 (230)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 3456678899999999999999998764
No 115
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=22.01 E-value=6.1e+02 Score=23.08 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=30.5
Q ss_pred eeeEEEEccccceEEEEEEEecCCCcceeEeEEEe----eeeeEEEeeceeeeccceeEEEE
Q 024177 3 AAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLG----STALELEVGGGRKISEFSTIRML 60 (271)
Q Consensus 3 w~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~~~g----t~g~~~e~g~~rkvs~~s~~g~~ 60 (271)
|++++++.. ...+.++|-+++.++ +.+|+.+. .....+++|+..++...+.+.+-
T Consensus 172 ~~~s~~l~~-~~~l~~S~~~kv~~~--l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkak 230 (276)
T cd07306 172 FELSLKLNN-GKTLRGSYFHKVSPR--LAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAK 230 (276)
T ss_pred eEEEEEECC-CCEEEEEEEEEcCCC--eEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEE
Confidence 555666655 356778888888764 33443333 22345666666666554444443
No 116
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=21.93 E-value=2.5e+02 Score=28.99 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=6.3
Q ss_pred eeEEeeeeee
Q 024177 198 QVLDVTLPLN 207 (271)
Q Consensus 198 ~~iDVTipLq 207 (271)
..||+-.|-+
T Consensus 519 caidqe~PTp 528 (708)
T KOG3654|consen 519 CAIDQETPTP 528 (708)
T ss_pred ccccccCCCc
Confidence 3677777744
No 117
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.88 E-value=1.8e+02 Score=19.54 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=7.2
Q ss_pred hcchhhhHHHHHHHHH
Q 024177 114 ILKPYYLKREKQKALE 129 (271)
Q Consensus 114 v~~P~~~r~~~~~~~~ 129 (271)
++.|..++++.++..+
T Consensus 22 ~~~~~~~~r~~~~~l~ 37 (46)
T PF04995_consen 22 IVWSLRRRRRLRKELK 37 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555544444333
No 118
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=21.78 E-value=4.8e+02 Score=21.79 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 133 KTSAQVQEAKAAAQKAQQLLQNVANRKRN 161 (271)
Q Consensus 133 ~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~ 161 (271)
+-.+-+.+++++|+...+-+.+.|+...+
T Consensus 75 ea~~ii~~A~~~a~~~~~~~l~~A~~ea~ 103 (164)
T PRK14473 75 EAAKIVAQAQERARAQEAEIIAQARREAE 103 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544444444433
No 119
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=21.75 E-value=3.5e+02 Score=20.16 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=5.4
Q ss_pred hhhhHhhHHHH
Q 024177 95 FATGAFIIPAS 105 (271)
Q Consensus 95 ~~~~a~v~P~~ 105 (271)
.++..+++|++
T Consensus 21 lA~~~tll~l~ 31 (67)
T COG3114 21 LAVGMTLLPLA 31 (67)
T ss_pred HHHHHHHHHHH
Confidence 44445555544
No 120
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.58 E-value=3.6e+02 Score=20.49 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=5.2
Q ss_pred hhHHHHHHHHH
Q 024177 100 FIIPASVYFLL 110 (271)
Q Consensus 100 ~v~P~~~~~~~ 110 (271)
.+.|+...+++
T Consensus 29 ~LtPlfiisa~ 39 (74)
T PF15086_consen 29 ILTPLFIISAV 39 (74)
T ss_pred HHhHHHHHHHH
Confidence 34555544443
No 121
>PRK12704 phosphodiesterase; Provisional
Probab=21.07 E-value=7.2e+02 Score=25.32 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=3.6
Q ss_pred eEEeeeee
Q 024177 199 VLDVTLPL 206 (271)
Q Consensus 199 ~iDVTipL 206 (271)
+.+-|+.+
T Consensus 206 ~~e~~~~~ 213 (520)
T PRK12704 206 VAETTVSV 213 (520)
T ss_pred hhhhceee
Confidence 44444433
No 122
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=20.28 E-value=85 Score=25.92 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.7
Q ss_pred eeeEEEEEEEEc-CeEEEEEEEeec
Q 024177 66 QGIFWKFELHRA-GQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~-gQ~~~~PI~Ls~ 89 (271)
.-|.+.|.+... .|.|-+|++|||
T Consensus 86 p~V~I~F~i~d~~~~HYHVPLLlSP 110 (121)
T cd05821 86 EYAEVVFTANDSGHRHYTIAALLSP 110 (121)
T ss_pred ceEEEEEEECCCCCCCeEeCeEecC
Confidence 357888888888 499999999999
No 123
>PRK14011 prefoldin subunit alpha; Provisional
Probab=20.13 E-value=5.3e+02 Score=21.77 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024177 123 EKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIG 167 (271)
Q Consensus 123 ~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~~~~ 167 (271)
+.....+..++..+.+.+...+..+...-|+..++..+++....+
T Consensus 96 ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~~~ 140 (144)
T PRK14011 96 SVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQMK 140 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445666777888889999999988888888888877755554443
No 124
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=20.07 E-value=5.3e+02 Score=22.04 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=32.9
Q ss_pred hhhhhHhhHHHHHHHHHHhhhcchhhhHH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 94 FFATGAFIIPASVYFLLKKFILKPYYLKR------------EKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRK 159 (271)
Q Consensus 94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~r~------------~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~ 159 (271)
..+.+.+++-++.|++++..+.+=...|+ .+.+..+...+.++++.++|.||.+.++--+..++..
T Consensus 32 ~~inflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~ 109 (184)
T PRK13455 32 VTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAA 109 (184)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666665433222222221 1122233344555667777777766666555555443
Done!