Query 024177
Match_columns 271
No_of_seqs 133 out of 168
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx9_A Latrophilin 1; lectin, 90.5 0.14 4.9E-06 39.7 2.7 19 227-247 82-100 (106)
2 2zx2_A CSL3; lectin, rhamnose, 86.0 0.33 1.1E-05 41.5 2.3 32 231-262 78-111 (195)
3 2zx2_A CSL3; lectin, rhamnose, 80.2 0.79 2.7E-05 39.1 2.3 18 227-246 176-193 (195)
4 2rdd_B UPF0092 membrane protei 77.4 1.6 5.5E-05 27.5 2.6 24 99-122 4-28 (37)
5 3pys_P 30S ribosomal protein S 57.8 2.7 9.2E-05 31.5 0.5 19 223-241 31-49 (83)
6 3emn_X Voltage-dependent anion 34.4 2.5E+02 0.0085 25.0 10.3 56 2-60 189-248 (295)
7 3jtz_A Integrase; four strande 33.7 43 0.0015 24.6 3.9 29 237-265 34-62 (88)
8 2g2n_A Transthyretin-like prot 32.0 27 0.00093 27.3 2.6 24 66-89 82-105 (114)
9 4efa_G V-type proton ATPase su 30.7 1.9E+02 0.0065 22.5 7.6 43 121-163 20-62 (119)
10 3bn0_A 30S ribosomal protein S 29.4 13 0.00045 29.2 0.4 19 223-243 32-50 (112)
11 2h0e_A Transthyretin-like prot 29.1 32 0.0011 27.3 2.6 24 66-89 89-112 (121)
12 1f86_A Transthyretin Thr119Met 27.7 44 0.0015 26.1 3.1 24 66-89 80-104 (115)
13 3ju0_A Phage integrase; four s 27.7 54 0.0018 25.1 3.6 28 238-265 35-62 (108)
14 3bbn_P Ribosomal protein S16; 26.7 30 0.001 26.0 1.9 14 223-236 31-44 (88)
15 1oo2_A Transthyretin; retinol- 26.3 46 0.0016 26.2 3.0 24 66-89 81-105 (119)
16 2h4e_A Transthyretin; amyloid, 25.0 52 0.0018 26.2 3.1 24 66-89 89-113 (127)
17 4b4p_A FEDF, F18 fimbrial adhe 24.8 59 0.002 25.5 3.4 62 20-81 35-120 (151)
18 2aze_A Transcription factor DP 23.8 2.5E+02 0.0085 23.1 7.1 40 127-166 10-52 (155)
19 3r8n_P 30S ribosomal protein S 23.6 17 0.00057 27.0 -0.0 15 223-237 31-45 (82)
20 3iwv_A 5-hydroxyisourate hydro 23.0 38 0.0013 27.5 2.0 24 66-89 106-129 (138)
21 3v6i_A V-type ATP synthase sub 21.8 3E+02 0.01 22.3 7.5 7 241-247 160-166 (187)
22 1v54_I STA, cytochrome C oxida 20.3 88 0.003 22.6 3.3 29 94-122 19-47 (73)
23 4ank_A Transthyretin; hormone 20.1 73 0.0025 25.9 3.2 23 67-89 110-133 (147)
No 1
>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated, G-protein C receptor, membrane, receptor, transducer, transmembrane, CE adhesion; HET: NAG; NMR {Mus musculus} PDB: 2jxa_A*
Probab=90.55 E-value=0.14 Score=39.69 Aligned_cols=19 Identities=42% Similarity=0.737 Sum_probs=16.6
Q ss_pred CCCccCCCCCCCceEEEEEEE
Q 024177 227 IMGFCDSCPGEPKQLYVEYTY 247 (271)
Q Consensus 227 L~GF~DP~~g~~K~L~V~Y~f 247 (271)
..| |||||..|.|.|.|.=
T Consensus 82 ~Fg--DPCpgt~KyL~V~y~C 100 (106)
T 2jx9_A 82 AFP--DPCPGTYKYLEVQYDC 100 (106)
T ss_dssp GSC--CSSTTSCCEEEEEEEE
T ss_pred ccC--CCCCCccEEEEEEEEe
Confidence 346 9999999999999974
No 2
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*
Probab=85.99 E-value=0.33 Score=41.47 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred cCCCCCCCceEEEEEEECCeeEE--EEEcCCccc
Q 024177 231 CDSCPGEPKQLYVEYTYGGNRYE--VFVDDYEEL 262 (271)
Q Consensus 231 ~DP~~g~~K~L~V~Y~f~~~~h~--v~v~D~e~l 262 (271)
-|||||..|.|.|.|.=....+. ..+-+++.+
T Consensus 78 gDPC~g~~KyL~V~y~C~~~~~~~~~~~CE~~~~ 111 (195)
T 2zx2_A 78 GDPCVGTYKYLDTKYSCVQQQETISSIICEGSDS 111 (195)
T ss_dssp CCSSTTSCCEEEEEEEEECSSCCEEEEEETTSEE
T ss_pred CCCCCCceeeeeeeeeecccccccceecccccce
Confidence 39999999999999998543222 235555544
No 3
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*
Probab=80.24 E-value=0.79 Score=39.06 Aligned_cols=18 Identities=50% Similarity=0.850 Sum_probs=16.0
Q ss_pred CCCccCCCCCCCceEEEEEE
Q 024177 227 IMGFCDSCPGEPKQLYVEYT 246 (271)
Q Consensus 227 L~GF~DP~~g~~K~L~V~Y~ 246 (271)
..| |||||..|.|.|.|.
T Consensus 176 ~FG--DPC~gt~KyL~V~y~ 193 (195)
T 2zx2_A 176 VFG--DPCVGTYKYLDVAYT 193 (195)
T ss_dssp HHC--CSSTTSCCEEEEEEE
T ss_pred cCC--CCCCCCCeEEEEEEE
Confidence 346 999999999999996
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=77.44 E-value=1.6 Score=27.52 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=15.2
Q ss_pred HhhHHHHHHH-HHHhhhcchhhhHH
Q 024177 99 AFIIPASVYF-LLKKFILKPYYLKR 122 (271)
Q Consensus 99 a~v~P~~~~~-~~~~~v~~P~~~r~ 122 (271)
..++|+++.+ ++.++++||-++|+
T Consensus 4 ~~~l~~v~~~~ifYFl~iRPQ~Kr~ 28 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRPQQKRT 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4566777654 44566778876553
No 5
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=57.84 E-value=2.7 Score=31.47 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=13.5
Q ss_pred cccCCCCccCCCCCCCceE
Q 024177 223 KKSGIMGFCDSCPGEPKQL 241 (271)
Q Consensus 223 sKs~L~GF~DP~~g~~K~L 241 (271)
..=..+|||||.+.+++.+
T Consensus 31 r~IE~lG~YnP~~~~~~~i 49 (83)
T 3pys_P 31 KYIEKIGYYDPRKTTPDWL 49 (83)
T ss_dssp CCSEECCCBCSSCCSTTCB
T ss_pred CceeeeeEEcCCCCCCceE
Confidence 4455799999998655544
No 6
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=34.36 E-value=2.5e+02 Score=24.97 Aligned_cols=56 Identities=5% Similarity=0.004 Sum_probs=33.9
Q ss_pred ceeeEEEEccccceEEEEEEEecCCCcceeEeEEEe----eeeeEEEeeceeeeccceeEEEE
Q 024177 2 SAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLG----STALELEVGGGRKISEFSTIRML 60 (271)
Q Consensus 2 sw~~~~~~g~~~~~~s~~y~r~~~~~~~~r~~~~~g----t~g~~~e~g~~rkvs~~s~~g~~ 60 (271)
.|.++++++. ...+.++|-++++++ +.+|+.+. +....+++|+..++.+.+.+.+-
T Consensus 189 d~~~s~~l~~-~~~~~aSy~qkvs~~--~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKak 248 (295)
T 3emn_X 189 EFQLHTNVND-GTEFGGSIYQKVNKK--LETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAK 248 (295)
T ss_dssp SEEEEEEEET-TTEEEEEEEEECSSS--EEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEE
T ss_pred CEEEEEEECC-CCeEEEEEEEECCCc--eEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEE
Confidence 3677777775 357899999999874 34555544 23345666666555444443333
No 7
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=33.72 E-value=43 Score=24.59 Aligned_cols=29 Identities=14% Similarity=0.462 Sum_probs=25.2
Q ss_pred CCceEEEEEEECCeeEEEEEcCCcccccc
Q 024177 237 EPKQLYVEYTYGGNRYEVFVDDYEELFIP 265 (271)
Q Consensus 237 ~~K~L~V~Y~f~~~~h~v~v~D~e~l~lP 265 (271)
-.|.-.++|+|.|+...++++....+.|-
T Consensus 34 G~K~w~~ryr~~Gk~~~~~LG~yp~~sL~ 62 (88)
T 3jtz_A 34 GSRHWYLKYRISGKESRIALGAYPAISLS 62 (88)
T ss_dssp SCEEEEEEEEETTEEEEEEEEETTTSCHH
T ss_pred CCEEEEEEEEeCCeEEEEEeECCCCCCHH
Confidence 46889999999999999999998877664
No 8
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=32.05 E-value=27 Score=27.34 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.5
Q ss_pred eeeEEEEEEEEcCeEEEEEEEeec
Q 024177 66 QGIFWKFELHRAGQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~gQ~~~~PI~Ls~ 89 (271)
+-|.+.|.++..+|.|-+|++|||
T Consensus 82 p~V~i~F~i~d~~~HYHVPLLlSP 105 (114)
T 2g2n_A 82 PEIPVEFHINKVNEHYHVPLLLSQ 105 (114)
T ss_dssp SCEEEEEEESSTTSCEEEEEEEET
T ss_pred ceEEEEEEECCCCCCeEEeEEecC
Confidence 468888999888999999999998
No 9
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=30.67 E-value=1.9e+02 Score=22.52 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024177 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQ 163 (271)
Q Consensus 121 r~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E 163 (271)
++.+....+.|+....++..+|.||+..|+-.+..-++.-.+.
T Consensus 20 k~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~ 62 (119)
T 4efa_G 20 KEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEF 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777778899999999999999888877765443
No 10
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=29.40 E-value=13 Score=29.19 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=12.4
Q ss_pred cccCCCCccCCCCCCCceEEE
Q 024177 223 KKSGIMGFCDSCPGEPKQLYV 243 (271)
Q Consensus 223 sKs~L~GF~DP~~g~~K~L~V 243 (271)
..=..+|||||. .++.+.+
T Consensus 32 r~IE~lG~YnP~--~~~~v~l 50 (112)
T 3bn0_A 32 KYIDILGTYDPK--RKVLINV 50 (112)
T ss_dssp -CSEEEEEEETT--TTEEEEE
T ss_pred CCEeEeeeccCC--CcceEEE
Confidence 445569999998 5554443
No 11
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=29.13 E-value=32 Score=27.25 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.6
Q ss_pred eeeEEEEEEEEcCeEEEEEEEeec
Q 024177 66 QGIFWKFELHRAGQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~gQ~~~~PI~Ls~ 89 (271)
+-|.+.|.++..+|.|-+|++|||
T Consensus 89 p~V~i~F~i~d~~~HYHVPLLlSP 112 (121)
T 2h0e_A 89 TIVTVRFQLADPDAHYHIPLLLSP 112 (121)
T ss_dssp SSEEEEEEECCTTSEEECCEEEET
T ss_pred ceEEEEEEECCCCCCeEEeEEecC
Confidence 368888999989999999999998
No 12
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=27.70 E-value=44 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.8
Q ss_pred eeeEEEEEEEEc-CeEEEEEEEeec
Q 024177 66 QGIFWKFELHRA-GQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~-gQ~~~~PI~Ls~ 89 (271)
+-|.+.|.+... .|.|-+|++|||
T Consensus 80 p~V~i~F~i~d~~~~HYHVPLLlSP 104 (115)
T 1f86_A 80 EHAEVVFTANDSGPRRYTIAALLSP 104 (115)
T ss_dssp EEEEEEEEESTTSCCEEEEEEEEET
T ss_pred ceEEEEEEECCCCCCCEEEeEEecC
Confidence 467788888888 599999999999
No 13
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=27.66 E-value=54 Score=25.08 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=24.3
Q ss_pred CceEEEEEEECCeeEEEEEcCCcccccc
Q 024177 238 PKQLYVEYTYGGNRYEVFVDDYEELFIP 265 (271)
Q Consensus 238 ~K~L~V~Y~f~~~~h~v~v~D~e~l~lP 265 (271)
.|.-.++|+|.|+...++++....+.|-
T Consensus 35 ~K~w~~rYr~~GK~~~~~LG~yp~~SLa 62 (108)
T 3ju0_A 35 SKYWRLSYRFEKKQRLLALGVYPAVSLA 62 (108)
T ss_dssp CEEEEEEEEETTEEEEEEEEEETTSCHH
T ss_pred CEEEEEEEEEcCceEEEecCCCCCCCHH
Confidence 6889999999999999999988776653
No 14
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=26.73 E-value=30 Score=25.99 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.0
Q ss_pred cccCCCCccCCCCC
Q 024177 223 KKSGIMGFCDSCPG 236 (271)
Q Consensus 223 sKs~L~GF~DP~~g 236 (271)
..=.-+|||||.+.
T Consensus 31 r~IE~lG~YnP~~~ 44 (88)
T 3bbn_P 31 RDLQKVGFYDPIKS 44 (88)
T ss_dssp CCSSCCCCBCTTSS
T ss_pred CcEeEEEeccCCCC
Confidence 45567999999874
No 15
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=26.28 E-value=46 Score=26.19 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.9
Q ss_pred eeeEEEEEEEEc-CeEEEEEEEeec
Q 024177 66 QGIFWKFELHRA-GQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~-gQ~~~~PI~Ls~ 89 (271)
.-|.+.|.+... .|.|-+|+||||
T Consensus 81 p~V~i~F~i~d~~~~HYHVPLLlSP 105 (119)
T 1oo2_A 81 EVAEVVFDAHPEGHGHYTLALLLSP 105 (119)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEET
T ss_pred ceEEEEEEECCCCCCCEEEeEEecC
Confidence 467788888888 599999999999
No 16
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=25.05 E-value=52 Score=26.22 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.8
Q ss_pred eeeEEEEEEEEc-CeEEEEEEEeec
Q 024177 66 QGIFWKFELHRA-GQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~-gQ~~~~PI~Ls~ 89 (271)
.-|.+.|.+... .|-|-+|+||||
T Consensus 89 p~V~I~F~i~d~~~~HYHVPLLlSP 113 (127)
T 2h4e_A 89 EHAEVVFTANDSGPRRYTIAALLSP 113 (127)
T ss_dssp EEEEEEEEESTTSCCEEEEEEEEET
T ss_pred ceEEEEEEECCCCCCCEEEeEEecC
Confidence 467788888888 599999999999
No 17
>4b4p_A FEDF, F18 fimbrial adhesin AC; cell adhesion, fimbriae, bacterial adhesins, protein-carbohy interactions, ABH blood group binding, STEC; 1.80A {Escherichia coli k-12} PDB: 4b4q_A* 4b4r_A*
Probab=24.84 E-value=59 Score=25.47 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=38.9
Q ss_pred EEEecCCCcceeEeEEEee-----eeeEEEeeceeeec--------------cceeEEEEEEEeee-----eeEEEEEEE
Q 024177 20 YTHRFSKKSHGRIQGRLGS-----TALELEVGGGRKIS--------------EFSTIRMLYSVGIQ-----GIFWKFELH 75 (271)
Q Consensus 20 y~r~~~~~~~~r~~~~~gt-----~g~~~e~g~~rkvs--------------~~s~~g~~v~ig~~-----Gv~lkl~~~ 75 (271)
|.-+|...+...+.+.+|| .|-+-.|..+.||| +.+.+|++..+|-. |+.+++++-
T Consensus 35 ynvnfipsssgtltcqagtilvwkngretqyalecrvsihhssgsinesqwgqqsqvgfgtacgnkkcrftgfeislrip 114 (151)
T 4b4p_A 35 YNVNFIPSSSGTLTCQAGTILVWKNGRETQYALECRVSIHHSSGSINESQWGQQSQVGFGTACGNKKCRFTGFEISLRIP 114 (151)
T ss_dssp EEEEECCSSCEEEEEEECEEEEEETTEEEEEECEEEEEEEETTSCEEECCCBSEEEEEECSEETTEECCEEEEEEEEECC
T ss_pred eeeeeeecCCCcEEEccceEEEEeCCceeeEeEEEEEEEeecCCccChhHhcccccccceeccCCceeeeeeeEEEEEcC
Confidence 3444544555567777776 45555566555554 45788888887752 777777766
Q ss_pred EcCeEE
Q 024177 76 RAGQKL 81 (271)
Q Consensus 76 R~gQ~~ 81 (271)
-..|+|
T Consensus 115 pnaqty 120 (151)
T 4b4p_A 115 PNAQTY 120 (151)
T ss_dssp GGGTTS
T ss_pred CCcccc
Confidence 655654
No 18
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.82 E-value=2.5e+02 Score=23.06 Aligned_cols=40 Identities=10% Similarity=0.181 Sum_probs=24.1
Q ss_pred HHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 024177 127 ALENMEKTSAQVQEAKA---AAQKAQQLLQNVANRKRNKQLEI 166 (271)
Q Consensus 127 ~~~~r~~~~~~i~~~R~---eA~~a~~Lm~~~a~r~~~~E~~~ 166 (271)
.++.+.+..++|.+|++ |=..++.-+++.++|+++.|.+.
T Consensus 10 Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~ 52 (155)
T 2aze_A 10 LEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQA 52 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444455555655543 33345556778899998888653
No 19
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=23.56 E-value=17 Score=27.00 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=10.8
Q ss_pred cccCCCCccCCCCCC
Q 024177 223 KKSGIMGFCDSCPGE 237 (271)
Q Consensus 223 sKs~L~GF~DP~~g~ 237 (271)
..=..+|||||.+..
T Consensus 31 r~IE~lG~YnP~~~~ 45 (82)
T 3r8n_P 31 RFIERVGFFNPIASE 45 (82)
T ss_dssp CEEEEEEEECTTCCS
T ss_pred CceeeeeEEcCCCCC
Confidence 334469999998753
No 20
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=23.02 E-value=38 Score=27.47 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.3
Q ss_pred eeeEEEEEEEEcCeEEEEEEEeec
Q 024177 66 QGIFWKFELHRAGQKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~gQ~~~~PI~Ls~ 89 (271)
+-|.+.|.++..+|.|-+|++|||
T Consensus 106 p~V~V~F~i~d~~~HYHVPLLlSP 129 (138)
T 3iwv_A 106 PYVEIVFTITNTSQHYHVPLLLSR 129 (138)
T ss_dssp SCEEEEEEECCTTSCEECCEEEET
T ss_pred eeeEEEEEECCCCCCeEEeEEecC
Confidence 357888889889999999999998
No 21
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=21.77 E-value=3e+02 Score=22.26 Aligned_cols=7 Identities=29% Similarity=0.197 Sum_probs=3.2
Q ss_pred EEEEEEE
Q 024177 241 LYVEYTY 247 (271)
Q Consensus 241 L~V~Y~f 247 (271)
..|.++|
T Consensus 160 I~vdnTl 166 (187)
T 3v6i_A 160 TQVENSL 166 (187)
T ss_dssp CEEEEEH
T ss_pred EEEECCH
Confidence 4444444
No 22
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=20.32 E-value=88 Score=22.56 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.3
Q ss_pred hhhhhHhhHHHHHHHHHHhhhcchhhhHH
Q 024177 94 FFATGAFIIPASVYFLLKKFILKPYYLKR 122 (271)
Q Consensus 94 ~~~~~a~v~P~~~~~~~~~~v~~P~~~r~ 122 (271)
.-+..++++.+.+.++.++++..|+.++.
T Consensus 19 ~~i~~a~~lsl~~~~~~k~~v~~pRK~aY 47 (73)
T 1v54_I 19 FHIVGAFMVSLGFATFYKFAVAEKRKKAY 47 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35667888889999999999999887653
No 23
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=20.07 E-value=73 Score=25.93 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.1
Q ss_pred eeEEEEEEEEcC-eEEEEEEEeec
Q 024177 67 GIFWKFELHRAG-QKLVVPILLSR 89 (271)
Q Consensus 67 Gv~lkl~~~R~g-Q~~~~PI~Ls~ 89 (271)
-|.+.|.++-.+ |.|-+|++|||
T Consensus 110 ~V~V~F~i~d~~~~HYHVPLLlSP 133 (147)
T 4ank_A 110 HAEVVFTANDSGPRRYTIAALLSP 133 (147)
T ss_dssp EEEEEEEESTTSCCEEEEEEEEET
T ss_pred ceEEEEEEECCCCCceeEeEEEcC
Confidence 567788887765 78999999999
Done!