Query 024177
Match_columns 271
No_of_seqs 133 out of 168
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 03:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024177.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024177hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9p1 d.27.1.1 (P:1-78) Ribo 47.0 2.5 0.00018 29.4 0.7 15 223-237 31-45 (78)
2 d2uubp1 d.27.1.1 (P:1-83) Ribo 42.3 3.7 0.00027 28.8 1.0 20 223-242 31-50 (83)
3 d1f86a_ b.3.4.1 (A:) Transthyr 26.9 22 0.0016 25.8 3.2 24 66-89 80-104 (115)
4 d1oo2a_ b.3.4.1 (A:) Transthyr 26.3 21 0.0015 26.0 2.9 23 67-89 82-105 (116)
5 d2azea1 e.63.1.1 (A:199-346) T 24.8 1.1E+02 0.0082 23.0 7.1 40 126-165 6-48 (148)
6 d2bi6h1 g.3.12.1 (H:8-31) Brom 20.1 19 0.0014 19.2 1.1 15 223-237 3-17 (26)
7 d1yfna1 b.136.1.1 (A:4-111) St 12.6 58 0.0042 23.4 2.6 48 202-257 36-83 (108)
8 d1t3qa2 d.15.4.2 (A:7-87) Quin 11.9 1.3E+02 0.0091 20.1 4.1 25 239-263 2-26 (81)
9 d1v54i_ f.23.3.1 (I:) Mitochon 11.3 1.2E+02 0.0089 20.1 3.7 27 95-121 20-46 (73)
10 d1v86a_ d.15.1.1 (A:) hypothet 10.9 1.8E+02 0.013 19.3 4.9 24 239-262 16-39 (95)
No 1
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=47.01 E-value=2.5 Score=29.39 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=11.6
Q ss_pred cccCCCCccCCCCCC
Q 024177 223 KKSGIMGFCDSCPGE 237 (271)
Q Consensus 223 sKs~L~GF~DP~~g~ 237 (271)
..=..+|||||++.+
T Consensus 31 k~iE~lG~YnP~~~~ 45 (78)
T d2gy9p1 31 RFIERVGFFNPIASE 45 (78)
T ss_dssp CCSEECCEECSSCCS
T ss_pred cceeeeeeECCcCCC
Confidence 344579999999875
No 2
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=42.30 E-value=3.7 Score=28.79 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=14.1
Q ss_pred cccCCCCccCCCCCCCceEE
Q 024177 223 KKSGIMGFCDSCPGEPKQLY 242 (271)
Q Consensus 223 sKs~L~GF~DP~~g~~K~L~ 242 (271)
..=..+|||||-+..++.+.
T Consensus 31 k~IE~lG~YnP~~~~~~~i~ 50 (83)
T d2uubp1 31 KYIEKIGYYDPRKTTPDWLK 50 (83)
T ss_dssp CCSEEEEEECTTCCSSCCEE
T ss_pred cceeeeeEECCCCCCCceEE
Confidence 34457999999876666543
No 3
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.92 E-value=22 Score=25.80 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=19.6
Q ss_pred eeeEEEEEEEEcC-eEEEEEEEeec
Q 024177 66 QGIFWKFELHRAG-QKLVVPILLSR 89 (271)
Q Consensus 66 ~Gv~lkl~~~R~g-Q~~~~PI~Ls~ 89 (271)
.-|.+.|.+...+ +.|-||++|||
T Consensus 80 p~v~i~F~v~d~~~~hYHiPlllsP 104 (115)
T d1f86a_ 80 EHAEVVFTANDSGPRRYTIAALLSP 104 (115)
T ss_dssp EEEEEEEEESTTSCCEEEEEEEEET
T ss_pred ceEEEEEEecCCCCCceeEeEEEcC
Confidence 3577788887654 78999999999
No 4
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]}
Probab=26.28 E-value=21 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.4
Q ss_pred eeEEEEEEE-EcCeEEEEEEEeec
Q 024177 67 GIFWKFELH-RAGQKLVVPILLSR 89 (271)
Q Consensus 67 Gv~lkl~~~-R~gQ~~~~PI~Ls~ 89 (271)
-|.+.|.+. -..+.|-+|++|||
T Consensus 82 ~V~i~F~i~~d~~~hYHvPlllSP 105 (116)
T d1oo2a_ 82 VAEVVFDAHPEGHGHYTLALLLSP 105 (116)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEET
T ss_pred ceEEEEEECCCCCCCeeEEEEEcC
Confidence 477788885 66889999999999
No 5
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.75 E-value=1.1e+02 Score=23.01 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 024177 126 KALENMEKTSAQVQEAKAAAQ---KAQQLLQNVANRKRNKQLE 165 (271)
Q Consensus 126 ~~~~~r~~~~~~i~~~R~eA~---~a~~Lm~~~a~r~~~~E~~ 165 (271)
+.++.+++..++|.+|+++-. .++.-+++.++|++..|..
T Consensus 6 ~Le~E~~~~~erI~~K~~~LqeLi~Q~iafknLV~RN~~~e~~ 48 (148)
T d2azea1 6 NLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQ 48 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 334444555556666554333 3345677888999888763
No 6
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=20.06 E-value=19 Score=19.24 Aligned_cols=15 Identities=40% Similarity=0.864 Sum_probs=12.1
Q ss_pred cccCCCCccCCCCCC
Q 024177 223 KKSGIMGFCDSCPGE 237 (271)
Q Consensus 223 sKs~L~GF~DP~~g~ 237 (271)
.-|+-||||.-|..|
T Consensus 3 tysdcpgfcktckae 17 (26)
T d2bi6h1 3 TYSDCPGFCKTCKAE 17 (26)
T ss_dssp CCSSCCTTCSSBCCB
T ss_pred ccccCchHHHHHHHH
Confidence 457889999999765
No 7
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=12.60 E-value=58 Score=23.42 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=31.7
Q ss_pred eeeeeeeEEecCCcEEEcCCccccCCCCccCCCCCCCceEEEEEEECCeeEEEEEc
Q 024177 202 VTLPLNFLVNDSGRLKLHDGVKKSGIMGFCDSCPGEPKQLYVEYTYGGNRYEVFVD 257 (271)
Q Consensus 202 VTipLq~lV~dsg~L~l~~g~sKs~L~GF~DP~~g~~K~L~V~Y~f~~~~h~v~v~ 257 (271)
|.+|.++ |+|. |+.|.=+ -+-... =.. .+..+...=+|.|..+.+.|+
T Consensus 36 v~VP~~~-v~dg-~IvLNIs--p~Av~~---L~i-~nd~IsF~aRF~G~~~~i~vP 83 (108)
T d1yfna1 36 VQVPMEY-ARDG-QIVLNIA--PRAVGN---LEL-ANDEVRFNARFGGIPRQVSVP 83 (108)
T ss_dssp CBSCGGG-CBTT-EEEEECS--GGGCEE---EEE-CSSEEEEEEEETTEEEEEEEE
T ss_pred CcCCHHH-ccCC-eEEEEcC--hhhccC---EEE-cCCEEEEEEEECCeeEEEEEE
Confidence 5588888 7866 9999774 211111 111 244577788999999998875
No 8
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Probab=11.86 E-value=1.3e+02 Score=20.14 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.3
Q ss_pred ceEEEEEEECCeeEEEEEcCCcccc
Q 024177 239 KQLYVEYTYGGNRYEVFVDDYEELF 263 (271)
Q Consensus 239 K~L~V~Y~f~~~~h~v~v~D~e~l~ 263 (271)
+..+|...-+|+.++++++.++.|.
T Consensus 2 ~~~~i~~~vNG~~~~~~~~~~~~Ll 26 (81)
T d1t3qa2 2 QLMRISATINGKPRVFYVEPRMHLA 26 (81)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHH
T ss_pred CeEEEEEEECCEEEEEecCCCCCHH
Confidence 5678999999999999998887663
No 9
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.27 E-value=1.2e+02 Score=20.13 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=21.5
Q ss_pred hhhhHhhHHHHHHHHHHhhhcchhhhH
Q 024177 95 FATGAFIIPASVYFLLKKFILKPYYLK 121 (271)
Q Consensus 95 ~~~~a~v~P~~~~~~~~~~v~~P~~~r 121 (271)
-+..++++.+.+-++.|+++-+|+.+.
T Consensus 20 hl~~a~~lsl~~a~~~Kf~v~eprKka 46 (73)
T d1v54i_ 20 HIVGAFMVSLGFATFYKFAVAEKRKKA 46 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccHhHHH
Confidence 456788888888889999998887644
No 10
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.89 E-value=1.8e+02 Score=19.30 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=19.2
Q ss_pred ceEEEEEEECCeeEEEEEcCCccc
Q 024177 239 KQLYVEYTYGGNRYEVFVDDYEEL 262 (271)
Q Consensus 239 K~L~V~Y~f~~~~h~v~v~D~e~l 262 (271)
..+.|+-.|+++.|++.|+..+.+
T Consensus 16 ~~i~v~V~~~~k~~~i~v~~~~TV 39 (95)
T d1v86a_ 16 ELVDLKIIWNKTKHDVKVPLDSTG 39 (95)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBH
T ss_pred cEEEEEEEECCEEEEEEECCCCcH
Confidence 356666778999999999987754
Done!