BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024178
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2
Length = 304
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 38/242 (15%)
Query: 43 AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWT---R 97
AYG + E + N+ R+ S +YYF V+ YV KL +++FP++H +W +
Sbjct: 73 AYGSSLASHGKEMMDKNLDRFIPISKLKYYFAVDTVYVGKKLGLLVFPYMH-DNWEVNYQ 131
Query: 98 ITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------AL 149
PV P +DINAPDLYIP M F TYV++AG LG Q +F+PE AL
Sbjct: 132 QDTPVA-------PRFDINAPDLYIPVMGFITYVLVAGLALGTQNRFSPEILGIQASSAL 184
Query: 150 NWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYS- 208
WL I+ L +LL + L+++ + + +D+VA++GY + G+ + V+ ++F +
Sbjct: 185 VWLIIEVL------AVLLSLYLVTVNT-DLTTIDLVAFSGYKYVGMIVGVVAGLLFGRTG 237
Query: 209 YYFLILWMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL- 260
YY +LW C + VF ++T++ + +E +R + YL + IA AQ P+F+
Sbjct: 238 YYLALLWFCASIFVFTIRTLRLKILSEAAAEGRLVRGTKNQLRMYLTMAIAAAQ-PVFMY 296
Query: 261 WL 262
WL
Sbjct: 297 WL 298
>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1
Length = 300
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 131/241 (54%), Gaps = 36/241 (14%)
Query: 43 AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
AYG + E + NI R S +YYF V+ YV K+ +++FP++H+ R +
Sbjct: 69 AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128
Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
PV P +DINAPDLYIP MAF TY+++AG LG Q +F+PE AL
Sbjct: 129 DTPVA-------PRFDINAPDLYIPVMAFITYILVAGLALGTQSRFSPEILGMQASSALA 181
Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYS-Y 209
WL ++ L +LL + L+++ + + +D+VA++GY + G+ V+ ++F + Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFSGYKYVGMISGVIAGLLFGNTGY 234
Query: 210 YFLILWMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL-W 261
Y ++ W C+ + F+++T++ + +E +R + YL + IA Q P+F+ W
Sbjct: 235 YVVLAWCCISIVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMYLTMAIAAVQ-PIFMYW 293
Query: 262 L 262
L
Sbjct: 294 L 294
>sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1
Length = 300
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 36/241 (14%)
Query: 43 AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
AYG + E + NI R S +YYF V+ YV K+ +++FP++H+ R +
Sbjct: 69 AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128
Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
PV P +DINAPDLYIP MAF TY+++AG LG Q +F+PE AL
Sbjct: 129 DTPVA-------PRFDINAPDLYIPVMAFVTYILVAGLALGTQSRFSPEILGMQASSALA 181
Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYS-Y 209
WL ++ L +LL + L+++ + + +D+VA+ GY + G+ V+ ++F + Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFTGYKYVGMISGVISGLLFGKTGY 234
Query: 210 YFLILWMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL-W 261
Y ++ W C+ + F+++T++ + +E +R + YL + IA Q P+F+ W
Sbjct: 235 YIVLAWCCISIVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMYLTMAIAAVQ-PIFMYW 293
Query: 262 L 262
L
Sbjct: 294 L 294
>sp|Q5BJH7|YIF1B_HUMAN Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1
Length = 314
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 141/278 (50%), Gaps = 41/278 (14%)
Query: 6 GTQPGPG-MPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYF 64
G Q PG + PAA P P S + AYG + E V NI R+
Sbjct: 51 GAQRAPGGLSYPAA--SPTPHAAFLADPVSNMAM----AYGSSLAAQGKELVDKNIDRFI 104
Query: 65 --SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDL 120
+ +YYF V+ YV KL ++ FP+LH+ + + PV P +D+NAPDL
Sbjct: 105 PITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVA-------PRFDVNAPDL 157
Query: 121 YIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNWLFIKGLFGWFMQFMLLKVTLL 172
YIP MAF TYV++AG LG Q +F+P+ AL WL ++ L +LL + L+
Sbjct: 158 YIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVL------AILLSLYLV 211
Query: 173 SLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLIL-WMCMCMGVFLVKTMKRV 231
++ + + +D+VA+ GY + G+ VL ++F Y+L+L W C+ + VF+++T++
Sbjct: 212 TVNT-DLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLK 270
Query: 232 LFAE-------MRTHDSSRHHYLLIFIAFAQLPLFLWL 262
+ A+ +R + YL + +A AQ L WL
Sbjct: 271 ILADAAAEGVPVRGARNQLRMYLTMAVAAAQPMLMYWL 308
>sp|Q9CX30|YIF1B_MOUSE Protein YIF1B OS=Mus musculus GN=Yif1b PE=2 SV=2
Length = 311
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 128/239 (53%), Gaps = 34/239 (14%)
Query: 44 YGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE- 100
YG + E V NI R+ S +YYF V+ YV KL +++FP+LH+ + +
Sbjct: 81 YGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQD 140
Query: 101 -PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNW 151
PV P +DINAPDLYIP MAF TY+++AG LG Q +F+P+ AL W
Sbjct: 141 TPVA-------PRFDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASSALAW 193
Query: 152 LFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYY 210
L ++ + +LL + L+++ + + +D+VA+ GY + G+ VL ++F YY
Sbjct: 194 LTLE------VVAILLSLYLVTVNT-DLTTIDLVAFLGYKYVGMIGGVLTGLLFGKIGYY 246
Query: 211 FLILWMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFLWL 262
++ W C+ + VF+++T++ + A+ +R + YL + +A AQ L WL
Sbjct: 247 LVLAWCCVSIFVFMIRTLRLKILAQAAAEGVPVRGARNQLRMYLTMAVAAAQPVLMYWL 305
>sp|Q6P301|YIF1B_XENTR Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1
Length = 300
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 131/241 (54%), Gaps = 36/241 (14%)
Query: 43 AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
AYG + E + NI R S +YYF V+ YV K+ +++FP++H+ R +
Sbjct: 69 AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128
Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 150
PV R +DINAPDLYIP MAF TY+++AG LG Q +F+PE AL
Sbjct: 129 DTPVAPR-------FDINAPDLYIPVMAFITYILVAGLALGTQSRFSPEILGMQASSALA 181
Query: 151 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYY 210
WL ++ L +LL + L+++ + + +D+VA++GY + G+ V+ ++F + Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFSGYKYVGMISGVISGLLFGKTGY 234
Query: 211 FLIL-WMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL-W 261
+++L W + + F+++T++ + +E +R + YL + IA Q P+F+ W
Sbjct: 235 YVVLSWCGISVVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMYLTMAIAAVQ-PIFMYW 293
Query: 262 L 262
L
Sbjct: 294 L 294
>sp|P87148|YIF1_SCHPO Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hrf1 PE=3 SV=1
Length = 293
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 17/233 (7%)
Query: 45 GEKILGSSSEYVQSNISRYFSDPQ--YYFQVNDQYVRNKLKVVLFPFLHRGHWTRI---T 99
G+ + + EYV+ N ++ S + +YF V + YV KL +++FP+ R W R +
Sbjct: 61 GKNAVNAGQEYVEQNFGKWLSTTRLHHYFTVTNSYVVAKLLLIIFPWRRRS-WARKLRRS 119
Query: 100 EPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFG 159
E G Y PP D+N+PD+YIP MAF T+++L GLQ F PE K
Sbjct: 120 EINGSAEGYCPPAEDLNSPDMYIPLMAFTTHILLLCALAGLQDDFQPELFGLRASKACAV 179
Query: 160 WFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIV-FSYSYYFLILWMC 217
++F+ ++ L S ++ +LD++A++GY F GL L L ++ + F+ L+M
Sbjct: 180 VLVEFLATRLGCYLLNISSQSQVLDLLAFSGYKFVGLILTSLSKLFEMPWVTRFVFLYMY 239
Query: 218 MCMGVFLVKTMKRVLFAE--------MRTHDSSRHHYLLIFIAFAQLPLFLWL 262
+ FL++++K + E + +H SR Y L FIA +Q+ LF+++
Sbjct: 240 LATAFFLLRSLKYAVLPESTMAINATITSHQRSRRIYFLFFIAASQI-LFMYV 291
>sp|Q3T196|YIF1A_BOVIN Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1
Length = 293
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 15/227 (6%)
Query: 7 TQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFS- 65
+QPG G P P AD N + G + + AYG I + + + R+ S
Sbjct: 35 SQPG-GYPAPGADVA----FNVNHLLGDPMANMAM-AYGSSIASHGKDMMNKELHRFVSV 88
Query: 66 -DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPF 124
+Y+F V+ YV KL +++FP+ H+ + + V PP D+NAPDLYIP
Sbjct: 89 NKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVP-----LPPRQDLNAPDLYIPT 143
Query: 125 MAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTL-LSLGSGEAPLLD 183
MAF TYV+LAG LG+Q +F+PE L L M+ + L + + L+ +
Sbjct: 144 MAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGIYLATVRSDLSTFH 203
Query: 184 VVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCMCMGVFLVKTMK 229
++AY+GY + G+ L+VL ++F S YY + W + F+V++++
Sbjct: 204 LLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSALMYFIVRSLR 250
>sp|Q91XB7|YIF1A_MOUSE Protein YIF1A OS=Mus musculus GN=Yif1a PE=2 SV=1
Length = 293
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 9/191 (4%)
Query: 43 AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
AYG I + V + R+ S +Y+F V+ YV KL +++FP+ H+ + +
Sbjct: 65 AYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWKMQYSH 124
Query: 101 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGW 160
V PP D+NAPDLYIP MAF TYV+LAG LG+Q +F+PE L L
Sbjct: 125 DVP-----LPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTALVWV 179
Query: 161 FMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCM 218
FM+ + L + L E ++AY+GY + G+ L+VL ++F S YY + W
Sbjct: 180 FMEVLALLLGLYLATVRSELSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSS 239
Query: 219 CMGVFLVKTMK 229
+ F+V++++
Sbjct: 240 ALMYFIVRSLR 250
>sp|Q6PC24|YIF1A_DANRE Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1
Length = 307
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 35/244 (14%)
Query: 4 NMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRY 63
NM P G + +P NA GS L G + V I+R+
Sbjct: 48 NMAEMPAGGQEPGVGNIFADPMANAAMMYGSTLANQG------------KDIVNKEINRF 95
Query: 64 FS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLY 121
S +Y+F V+ +YV KL +++FP+ H+ R R + P +D+NAPDLY
Sbjct: 96 MSVNKLKYFFAVDTKYVMKKLLLLMFPYTHQDWEVRY-----HRDTPLTPRHDVNAPDLY 150
Query: 122 IPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNWLFIKGLFGWFMQFMLLKVTLLS 173
IP MAF TY++LAG LG+Q +F+PE AL W+ I+ L ++L T LS
Sbjct: 151 IPTMAFITYILLAGMALGIQKRFSPEVLGLCASTALVWMIIEVLVMLLSLYLLTVHTDLS 210
Query: 174 LGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCMCMGVFLVKTMKRVL 232
D+VAY+GY + G+ L V ++F S YY + W + F+V+++K +
Sbjct: 211 -------TFDLVAYSGYKYVGMILTVFCGLLFGSDGYYVALAWSSCALMFFIVRSLKMKI 263
Query: 233 FAEM 236
+ +
Sbjct: 264 LSSI 267
>sp|O95070|YIF1A_HUMAN Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2
Length = 293
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 9/191 (4%)
Query: 43 AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
AYG I + V + R+ S +Y+F V+ YV KL +++FP+ H+ +W E
Sbjct: 65 AYGSSIASHGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQ-NW----E 119
Query: 101 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGW 160
R + PP D+NAPDLYIP MAF TYV+LAG LG+Q +F+PE L L
Sbjct: 120 VQYSRDAPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWV 179
Query: 161 FMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCM 218
M+ + L + L + ++AY+GY + G+ L+VL ++F S YY + W
Sbjct: 180 VMEVLALLLGLYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSS 239
Query: 219 CMGVFLVKTMK 229
+ F+V++++
Sbjct: 240 ALMYFIVRSLR 250
>sp|Q6PEC3|YIF1B_RAT Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 SV=2
Length = 259
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 98/231 (42%), Gaps = 68/231 (29%)
Query: 43 AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 100
AYG + E V NI R+ S +YYF V+ YV KL +++FP+LH+ + +
Sbjct: 80 AYGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQ 139
Query: 101 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLF 158
PV P +DINAPDLYIP MAF TY+++AG LG Q +
Sbjct: 140 DTPVA-------PRFDINAPDLYIPAMAFITYILVAGLALGTQDRMI------------- 179
Query: 159 GWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCM 218
G TGL +G YY ++ W C+
Sbjct: 180 ------------------------------GGVLTGLLFGKIG-------YYLVLAWCCV 202
Query: 219 CMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFLWL 262
+ VF+++T++ + A+ +R + YL + +A AQ L WL
Sbjct: 203 SIFVFMIRTLRLKILAQAAAEGVPVRGARNQLRMYLTMAVAAAQPVLMYWL 253
>sp|P53845|YIF1_YEAST Protein transport protein YIF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YIF1 PE=1 SV=1
Length = 314
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 10/181 (5%)
Query: 70 YFQVNDQYVRNKLKVVLFPFLH-RGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFG 128
YFQV+ +YV NKLK++L PFL+ +W RI + ++ PP D+N+PD+Y+P M
Sbjct: 107 YFQVSTRYVINKLKLILVPFLNGTKNWQRIMDSG----NFLPPRDDVNSPDMYMPIMGLV 162
Query: 129 TYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP---LLDVV 185
TY+++ GL+G F PE L + L + ++LK+ L L + P L++++
Sbjct: 163 TYILIWNTQQGLKGSFNPEDLYYKLSSTLAFVCLDLLILKLGLYLLIDSKIPSFSLVELL 222
Query: 186 AYAGYTFTGLCLA-VLGRIVFSYSYYFLI-LWMCMCMGVFLVKTMKRVLFAEMRTHDSSR 243
Y GY F L LA +L + ++ LI ++ + GVFL++++K L + D
Sbjct: 223 CYVGYKFVPLILAQLLTNVTMPFNLNILIKFYLFIAFGVFLLRSVKFNLLSRSGAEDDDI 282
Query: 244 H 244
H
Sbjct: 283 H 283
>sp|Q89AI9|Y296_BUCBP Uncharacterized metalloprotease bbp_296 OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=bbp_296 PE=3
SV=1
Length = 376
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 87 FPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPF-MAFGTYVVLAGFTLGLQGKFT 145
FPFL + + P R + PI N+P I F M GT ++ G + L KF+
Sbjct: 224 FPFLKKYRISSKFNP--NRFN---PITKKNSPHQGIDFAMPIGTPILSIGDGVILNAKFS 278
Query: 146 PEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYT 191
+A N++ I+ + ++M LK L+ +G + + D + +G T
Sbjct: 279 IQAGNYITIQHNCSYITKYMHLKKILVKIGD-KVKMRDKIGLSGNT 323
>sp|Q4L6G9|AROB_STAHJ 3-dehydroquinate synthase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=aroB PE=3 SV=1
Length = 354
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 58 SNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLS 107
+S Y D F + D+YV K PFL H +I P G ++
Sbjct: 22 EELSEYIQDYDKVFLIIDEYVDFNFKTKFMPFLESTHIYKIIVPAGEKMK 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.145 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,508,350
Number of Sequences: 539616
Number of extensions: 4822070
Number of successful extensions: 14549
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14494
Number of HSP's gapped (non-prelim): 26
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)