Query 024179
Match_columns 271
No_of_seqs 276 out of 1675
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0945 Alpha-aminoadipic semi 100.0 1E-40 2.2E-45 290.0 15.5 226 5-232 17-250 (289)
2 COG2091 Sfp Phosphopantetheiny 100.0 1.5E-37 3.2E-42 270.3 16.3 207 5-231 3-209 (223)
3 PRK10351 holo-(acyl carrier pr 100.0 1.7E-32 3.7E-37 232.5 12.8 140 29-191 9-148 (187)
4 PRK10251 phosphopantetheinyltr 99.9 5.4E-24 1.2E-28 183.3 14.9 175 3-204 14-188 (207)
5 PRK14659 acpS 4'-phosphopantet 99.7 1.2E-16 2.7E-21 127.4 12.6 114 115-229 4-120 (122)
6 PF01648 ACPS: 4'-phosphopante 99.6 3.6E-16 7.7E-21 122.2 5.1 107 115-226 1-114 (115)
7 PRK14656 acpS 4'-phosphopantet 99.6 1.9E-14 4.1E-19 115.4 10.2 110 115-229 4-124 (126)
8 TIGR00556 pantethn_trn phospho 99.5 1.7E-13 3.6E-18 110.0 11.5 112 114-228 3-125 (128)
9 PRK14660 acpS 4'-phosphopantet 99.5 1.8E-13 3.8E-18 109.6 10.3 109 115-228 4-123 (125)
10 PRK14657 acpS 4'-phosphopantet 99.5 3E-13 6.5E-18 108.0 11.1 107 115-228 4-121 (123)
11 PRK14661 acpS 4'-phosphopantet 99.5 6E-13 1.3E-17 110.5 11.2 107 115-234 4-113 (169)
12 COG2977 EntD Phosphopantethein 99.4 9.5E-13 2.1E-17 113.2 11.9 147 27-193 35-186 (228)
13 COG0736 AcpS Phosphopantethein 99.4 7.7E-13 1.7E-17 105.4 9.0 112 115-230 4-125 (127)
14 TIGR00516 acpS holo-[acyl-carr 99.4 1.9E-12 4E-17 103.1 10.9 109 115-228 3-119 (121)
15 PRK14658 acpS 4'-phosphopantet 99.4 2.1E-12 4.5E-17 101.7 10.9 108 115-230 4-111 (115)
16 PRK00070 acpS 4'-phosphopantet 99.4 8.3E-13 1.8E-17 105.5 7.8 110 115-229 4-124 (126)
17 PRK14663 acpS 4'-phosphopantet 99.3 2.7E-11 5.9E-16 95.7 10.2 90 136-229 19-114 (116)
18 PRK14662 acpS 4'-phosphopantet 99.3 1.7E-11 3.7E-16 97.3 9.0 107 115-229 4-118 (120)
19 PRK00070 acpS 4'-phosphopantet 99.0 4.7E-10 1E-14 89.5 7.1 103 4-109 4-120 (126)
20 PRK14658 acpS 4'-phosphopantet 99.0 5.5E-09 1.2E-13 82.3 10.8 102 1-107 1-104 (115)
21 COG0736 AcpS Phosphopantethein 98.7 6.5E-08 1.4E-12 77.2 7.9 102 3-107 3-118 (127)
22 PRK14659 acpS 4'-phosphopantet 98.7 1.5E-07 3.3E-12 74.9 9.0 105 3-108 3-115 (122)
23 TIGR00516 acpS holo-[acyl-carr 98.6 3.2E-07 7E-12 73.0 9.5 82 24-108 25-115 (121)
24 PRK14660 acpS 4'-phosphopantet 98.6 2.4E-07 5.3E-12 74.1 8.7 103 3-108 3-119 (125)
25 PRK14663 acpS 4'-phosphopantet 98.5 1.2E-06 2.6E-11 69.2 9.5 82 24-108 20-109 (116)
26 PRK14662 acpS 4'-phosphopantet 98.4 9.2E-07 2E-11 70.3 7.6 104 1-108 1-113 (120)
27 PRK14657 acpS 4'-phosphopantet 98.3 2.3E-06 4.9E-11 68.3 7.8 100 4-108 4-117 (123)
28 PRK14656 acpS 4'-phosphopantet 98.3 5.1E-06 1.1E-10 66.5 9.3 105 1-108 1-119 (126)
29 PRK14661 acpS 4'-phosphopantet 98.1 3.6E-05 7.8E-10 64.3 10.3 97 1-107 1-102 (169)
30 TIGR00556 pantethn_trn phospho 97.6 0.0017 3.6E-08 51.8 11.7 105 1-109 1-122 (128)
31 PF01648 ACPS: 4'-phosphopante 96.7 0.0024 5.2E-08 49.2 4.6 87 23-110 19-115 (115)
32 PF13986 DUF4224: Domain of un 86.2 2.2 4.8E-05 28.0 4.8 42 28-85 2-43 (47)
33 PF11572 DUF3234: Protein of u 77.5 1.2 2.6E-05 33.4 1.2 16 164-179 56-71 (103)
34 COG0643 CheA Chemotaxis protei 30.9 23 0.00051 36.5 1.1 80 93-185 464-543 (716)
35 cd08324 CARD_NOD1_CARD4 Caspas 29.0 2.1E+02 0.0045 21.3 5.5 43 136-178 23-71 (85)
36 KOG0180 20S proteasome, regula 26.9 1.6E+02 0.0034 25.1 5.1 60 59-126 95-155 (204)
37 COG3908 Uncharacterized protei 25.9 76 0.0016 22.6 2.6 24 95-119 20-43 (77)
38 PF10813 DUF2733: Protein of u 25.5 33 0.00071 20.7 0.6 25 243-267 1-30 (32)
39 PF09866 DUF2093: Uncharacteri 25.4 49 0.0011 21.2 1.5 20 102-124 4-23 (42)
40 cd08778 Death_TNFRSF21 Death d 21.9 71 0.0015 22.8 1.9 54 117-172 2-58 (84)
41 PF06816 NOD: NOTCH protein; 20.4 1.4E+02 0.0031 20.3 3.1 27 55-85 27-53 (57)
No 1
>KOG0945 consensus Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-40 Score=289.97 Aligned_cols=226 Identities=29% Similarity=0.448 Sum_probs=193.5
Q ss_pred eEEEEEECCCCCCChhcHHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEccCCCCCcEEe
Q 024179 5 VQRWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLE 84 (271)
Q Consensus 5 v~vw~~~~~~~~~~~~~~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~~~~~i~~~~~~~GKP~l~ 84 (271)
.+.|.+...+|..+.+.+..+...|+++|++|+.+|++.+|++..|+||+|.|.+++.++|++|++++|.++.+|||++-
T Consensus 17 ~~~wAf~~~~~e~s~a~f~~a~~~ls~se~erI~qfr~~~DakaaL~grLl~R~~~a~~~~~~~n~l~f~rt~~GKP~l~ 96 (289)
T KOG0945|consen 17 SLQWAFVVPDFEKSLALFRHAVQSLSPSEKERILQFRFDEDAKAALAGRLLVRHLVAIYLGVPWNELRFSRTEYGKPVLW 96 (289)
T ss_pred hhhhheecchhhhhHHHHHHHHHhCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChhHeEeecccCCCcchh
Confidence 45688888888777778999999999999999999999999999999999999999999999999999999999999665
Q ss_pred cCCCCCCCCceeEEeccccCeEEEEecCCcccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHH
Q 024179 85 SDKAGMDFPNFNFNVSHHGDYVAIASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFY 164 (271)
Q Consensus 85 ~~~~~~~~~~~~fniSHs~~~v~~a~s~~~~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~ 164 (271)
+.......++++||+||.|+++++|.....+|||||++.... ....++.++++++||+.|++.+.+.+++..+...||
T Consensus 97 qn~~~p~~~~f~fNvSH~gd~iv~at~~~~~VGIDIm~~~~r--~~~~e~l~~~kr~fS~~E~k~l~s~~~e~~~~~~Fy 174 (289)
T KOG0945|consen 97 QNYSNPFSPTFGFNVSHQGDLIVVATTVHVPVGIDIMRPKER--KTAHEELELFKRVFSEDEWKMLKSAPDEEVQRTMFY 174 (289)
T ss_pred hcccCCCCCCccceeeeeceEEEEeccCCcccceeeeecccc--cchHHHHHHHHHhcCHHHHHHHHcCCChhhHHHHHH
Confidence 433222357899999999999999999889999999998532 245788999999999999999998877788899999
Q ss_pred HHHHHHHHHHhhhCcCCCCCCceEEEEeCCCC----Ce----EEEEcCcccccEEEEEEecCCCeEEEEEEecCcc
Q 024179 165 RYWCLKEAYVKAIGIGVAYGLDKVEFHHTGWG----NI----SVKIDGETMTEWKFWLFELGKRHWIKVHIVYARK 232 (271)
Q Consensus 165 ~~Wt~KEA~~Ka~G~GL~~~l~~~~~~~~~~~----~~----~l~~~g~~~~~w~~~~~~~~~~~~~Ava~~~~~~ 232 (271)
++||+||||+||+|.||..+|+.++|...+.. .. ....+|....+|.+....+++.|.+|||......
T Consensus 175 rlWtLKEa~lKAtGvGl~~~L~~~~F~~~p~~~~~g~s~~~T~~~~~g~~~~qw~feE~~i~~~h~vav~~~k~d~ 250 (289)
T KOG0945|consen 175 RLWTLKEAILKATGVGLNTDLSLLDFSANPFNTATGQSKVETLDEVDGIFQSQWNFEESFIDEAHSVAVCMEKSDS 250 (289)
T ss_pred HHHHHHHHHHHHhcCCcccccccccccccccccccceeeeeeeeccCCccchhhhhhhhhccccceeEEeccCCCc
Confidence 99999999999999999999999988765421 11 1234666667899999999999999998755433
No 2
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-37 Score=270.34 Aligned_cols=207 Identities=28% Similarity=0.316 Sum_probs=166.6
Q ss_pred eEEEEEECCCCCCChhcHHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEccCCCCCcEEe
Q 024179 5 VQRWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLE 84 (271)
Q Consensus 5 v~vw~~~~~~~~~~~~~~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~~~~~i~~~~~~~GKP~l~ 84 (271)
+.+|++++... -...+..+..++.+|+.|..||++.+||.|++++++++|.+|+..++.+|..+.|.++++|||++.
T Consensus 3 ~~~~v~~~~~~---~~~~~~~l~~~~~~E~~r~~r~~~~~dr~r~l~~~~~lr~lls~~l~~~~~~~~~~~~~~GKP~~~ 79 (223)
T COG2091 3 ATVFVVGIQSD---RPLIERRLPSLLSEEARRGPRYRNKRDRERFLASRLLLRALLSIALGLDPELLQISYGERGKPYLP 79 (223)
T ss_pred ceEEEEeccCc---chhhhhhhcccchHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhCCCcccceeeECCCCCcccc
Confidence 45777777652 134567788888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEeccccCeEEEEecCCcccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHH
Q 024179 85 SDKAGMDFPNFNFNVSHHGDYVAIASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFY 164 (271)
Q Consensus 85 ~~~~~~~~~~~~fniSHs~~~v~~a~s~~~~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~ 164 (271)
+. ..++|||||||+||+||++..++||||||.++.. ..+..+++++|++.|.+.+... +++++.+.||
T Consensus 80 ~~------~~~~FniSHSg~~v~v~l~~~~~iGVDIE~~~p~-----~~~~~la~~ff~~~e~~e~~~~-~~~~~~~~F~ 147 (223)
T COG2091 80 DE------NLLDFNISHSGDYVAVALSKEGEIGVDIEKIRPR-----AGWRSLAARFFHPFEPNELAWL-DKDQDNEAFY 147 (223)
T ss_pred CC------CCCcEEEeeeCCeEEEEEecccceeeeEEEecCC-----CcchhhHHHhcCcccHHHHhhc-ChHHHHHHHH
Confidence 83 3499999999999999999889999999999742 1234667888988888887654 5566689999
Q ss_pred HHHHHHHHHHhhhCcCCCCCCceEEEEeCCCCCeEEEEcCcccccEEEEEEecCCCeEEEEEEecCc
Q 024179 165 RYWCLKEAYVKAIGIGVAYGLDKVEFHHTGWGNISVKIDGETMTEWKFWLFELGKRHWIKVHIVYAR 231 (271)
Q Consensus 165 ~~Wt~KEA~~Ka~G~GL~~~l~~~~~~~~~~~~~~l~~~g~~~~~w~~~~~~~~~~~~~Ava~~~~~ 231 (271)
++||+||||+|++|.||+.+|+++.+........... .+...|.+... .+.|..+++.....
T Consensus 148 ~lWt~KEA~lKa~G~Gl~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~ 209 (223)
T COG2091 148 RLWTLKEAVLKATGKGLADGLSSVDLTPIAGKLSLAH---CQLEALSLAEE--VPVYSVAVAPAIPK 209 (223)
T ss_pred HHHHHHHHHHHhhCCccccCccceeeccccccccccc---cchhheeehhh--cCccceeehhhhhh
Confidence 9999999999999999999999999986542211111 13345766665 35666666655443
No 3
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=100.00 E-value=1.7e-32 Score=232.54 Aligned_cols=140 Identities=25% Similarity=0.243 Sum_probs=115.1
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEccCCCCCcEEecCCCCCCCCceeEEeccccCeEEE
Q 024179 29 LPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLESDKAGMDFPNFNFNVSHHGDYVAI 108 (271)
Q Consensus 29 L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~~~~~i~~~~~~~GKP~l~~~~~~~~~~~~~fniSHs~~~v~~ 108 (271)
|+++-.+++ .++++|.+||+||+++|.+++. . | .|.++++|||++.+ .++++||||||+++++|
T Consensus 9 ~~~~~~~~~---~~~kRR~efLagR~lLr~~L~~---~-p---~i~~~~~GKP~l~~------~~~~~fSISHSg~~va~ 72 (187)
T PRK10351 9 LPPALREQA---PQGPRRARWLAGRVLLSHALSP---L-P---EIIYGEQGKPAFAP------ETPLWFNLSHSGDDIAL 72 (187)
T ss_pred CCHHHHHhC---CCHHHHHHHHHHHHHHHHHhhc---C-C---CcccCcCCCccccC------CCCCeEEEecccCcEEE
Confidence 666654443 3789999999999999999864 1 2 47899999999976 35789999999999999
Q ss_pred EecCCcccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCCCCceE
Q 024179 109 ASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAYGLDKV 188 (271)
Q Consensus 109 a~s~~~~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~l~~~ 188 (271)
+++...+||||||.+++. .++..+++++|+++|++++.+. +++++.+.|+++||+||||+|++|.++.. +.++
T Consensus 73 a~s~~~~VGIDIE~i~~~-----~~~~~la~~~fs~~E~~~L~~~-~~~~~~~~F~~lWT~KEA~lKa~G~~~~~-~~~~ 145 (187)
T PRK10351 73 LLSDEGEVGCDIEVIRPR-----ANWRSLANAVFSLGEHAEMDAV-HPEQQLEAFWRIWTRKEAIVKQRGGSAWQ-IVSV 145 (187)
T ss_pred EEEcCCCeEEEEEEecCc-----cCHHHHHHHhCCHHHHHHHHcC-CchhHHHHHHHHHHHHHHHhcccCCCCcc-cccc
Confidence 999878999999998743 2456788999999999999764 55677899999999999999999999873 4444
Q ss_pred EEE
Q 024179 189 EFH 191 (271)
Q Consensus 189 ~~~ 191 (271)
.+.
T Consensus 146 ~~~ 148 (187)
T PRK10351 146 DST 148 (187)
T ss_pred Ccc
Confidence 443
No 4
>PRK10251 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional
Probab=99.91 E-value=5.4e-24 Score=183.32 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=124.9
Q ss_pred CCeEEEEEECCCCCCChhcHHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEccCCCCCcE
Q 024179 3 KGVQRWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPY 82 (271)
Q Consensus 3 ~~v~vw~~~~~~~~~~~~~~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~~~~~i~~~~~~~GKP~ 82 (271)
.++.+|.++.+.-..+++.+ +..=-+....++ .+++|.+|++||.++|.+|.+. |.+. +. ..+++|+|+
T Consensus 14 ~~~~~~~~~Fd~~~~~~~~~---~~i~~p~~l~~A----v~kRr~EflAgR~~A~~aL~~l-g~~~--~~-~~g~~r~P~ 82 (207)
T PRK10251 14 AGHTLHFVEFDPASFHEQDL---LWLPHYAQLQHA----GRKRKAEHLAGRIAAVYALREY-GYKC--VP-AIGELRQPV 82 (207)
T ss_pred CCcEEEEEEechHHCCHhHc---cCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHh-CCCC--CC-CcCCCCCcc
Confidence 35666765555322233333 222112333333 3578899999999999999764 6543 22 679999999
Q ss_pred EecCCCCCCCCceeEEeccccCeEEEEecCCcccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHH
Q 024179 83 LESDKAGMDFPNFNFNVSHHGDYVAIASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIE 162 (271)
Q Consensus 83 l~~~~~~~~~~~~~fniSHs~~~v~~a~s~~~~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~ 162 (271)
++. ++++|||||+++++++++. ..||||||.+... ....++++++|+++|++++..... .+...
T Consensus 83 wP~--------gi~gSISHS~~~a~aav~~-~~VGIDIE~~~~~-----~~~~~i~~~ilt~~E~~~l~~~~~--~~~~~ 146 (207)
T PRK10251 83 WPA--------GVYGSISHCGTTALAVVSR-QPIGIDIEEIFSA-----QTATELTDNIITPAEHERLADCGL--AFPLA 146 (207)
T ss_pred CCC--------CceeCcccccCeEEEEEeC-CCcEEEeeecccc-----chHHHHHHHhCCHHHHHHHHcCCc--ccccc
Confidence 974 6899999999999999986 6799999997532 123467899999999999976432 23567
Q ss_pred HHHHHHHHHHHHhhhCcCCCCCCceEEEEeCCCCCeEEEEcC
Q 024179 163 FYRYWCLKEAYVKAIGIGVAYGLDKVEFHHTGWGNISVKIDG 204 (271)
Q Consensus 163 f~~~Wt~KEA~~Ka~G~GL~~~l~~~~~~~~~~~~~~l~~~g 204 (271)
|+.+||+|||++||+|..-..++...++..-+.+...+.+..
T Consensus 147 ~tlifSAKEAlfKA~~~~~~~~F~~a~i~~~~~~~~~l~l~~ 188 (207)
T PRK10251 147 LTLAFSAKESAFKASEIQTLAGFLDYQIISWNKQQIIIHREN 188 (207)
T ss_pred eeeeeeHHHHHHHhcCccccCCCCeEEEEEecCCEEEEEecc
Confidence 899999999999999998667888887765444445555443
No 5
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.71 E-value=1.2e-16 Score=127.36 Aligned_cols=114 Identities=20% Similarity=0.263 Sum_probs=89.1
Q ss_pred ccccccccccCcccCChhhH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCCC--CceEEEE
Q 024179 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAYG--LDKVEFH 191 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~-~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~--l~~~~~~ 191 (271)
.|||||+.+.+... .+.++ .++++++||++|+..+....+.+.+.+.|+..||+|||++||+|.|++.+ ++++++.
T Consensus 4 giGiDiv~i~ri~~-~~~~~~~~f~~r~ft~~E~~~~~~~~~~~~~~~~la~rwaaKEA~~KAlg~g~~~~~~~~di~i~ 82 (122)
T PRK14659 4 GIGTDIVYIPRILN-LLKKFGNKFLNRVFSEKEIEDSLKYTSQEARARHFAKRFAAKEAYVKALGTGFGRGIKMKDISVY 82 (122)
T ss_pred EEEeeEEEehHHHH-HHHHhhHHHHHhcCCHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhccCcCcCccccEEEEE
Confidence 48999999986421 12222 34679999999999976433334467899999999999999999998654 7999999
Q ss_pred eCCCCCeEEEEcCcccccEEEEEEecCCCeEEEEEEec
Q 024179 192 HTGWGNISVKIDGETMTEWKFWLFELGKRHWIKVHIVY 229 (271)
Q Consensus 192 ~~~~~~~~l~~~g~~~~~w~~~~~~~~~~~~~Ava~~~ 229 (271)
.++.+.+.+.++|.....|...++..+.+|++|+++..
T Consensus 83 ~~~~g~P~v~l~~~~~~~~i~vSiSh~~~ya~A~vi~~ 120 (122)
T PRK14659 83 NDLYGKPQITVSKSNIDHKIELSLSDDGDYAIAFVVLH 120 (122)
T ss_pred ECCCCCeEEEECCcccccEEEEEEEcCCCcEEEEEEEE
Confidence 98888899998886544666777778899999998753
No 6
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP []. This superfamily consists of two subtypes: The ACPS type such as ACPS_ECOLI and the Sfp type such as SFP_BACSU. The structure of the Sfp type is known [], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion. ; GO: 0000287 magnesium ion binding, 0008897 holo-[acyl-carrier-protein] synthase activity, 0009059 macromolecule biosynthetic process; PDB: 3QMN_S 3GWM_A 3NFD_D 3NE9_C 1FTH_C 1FTE_C 1FTF_B 3HYK_B 2WDY_A 2WDS_A ....
Probab=99.62 E-value=3.6e-16 Score=122.23 Aligned_cols=107 Identities=24% Similarity=0.350 Sum_probs=72.7
Q ss_pred ccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhC-cCCCCCC--ceEEEE
Q 024179 115 LVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIG-IGVAYGL--DKVEFH 191 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G-~GL~~~l--~~~~~~ 191 (271)
+||||||.+++.. ...+.++++++||++|+.++.+. +..++.+.|+.+||+|||++||+| .| +.++ ..+++.
T Consensus 1 ~iGiDIe~~~~~~---~~~~~~~~~~~~t~~E~~~l~~~-~~~~~~~~~~~~Wt~KEA~~Ka~g~~g-~~~~~~~~i~~~ 75 (115)
T PF01648_consen 1 GIGIDIEKIDRPR---ERRFEKFAERFFTPEELEWLRSL-PSEERLQAFTLLWTAKEAVYKALGLTG-SLDLSFREIELH 75 (115)
T ss_dssp EEEEEEEEHHHHH---HHHTTHHHHHHS-HHHHHHHHCT-SSHHHHHHHHHHHHHHHHHHHHHTTST-SSTSHGGGEEEE
T ss_pred CEEEEeeEecccc---ccCHHHHHHHhCCHHHHHHHHhC-CccchHHHHHHHHHHHHHHHHHhcccC-CcccccEEEEEE
Confidence 4899999998621 01234678899999999999875 346778999999999999999999 88 4445 455556
Q ss_pred eCCCCCeEEEEc----CcccccEEEEEEecCCCeEEEEE
Q 024179 192 HTGWGNISVKID----GETMTEWKFWLFELGKRHWIKVH 226 (271)
Q Consensus 192 ~~~~~~~~l~~~----g~~~~~w~~~~~~~~~~~~~Ava 226 (271)
....+.+.+... ......|.++.....+++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 114 (115)
T PF01648_consen 76 KPPGGRPSLSLWASWIFDGDKIWRFHVSISHDEDYAAAF 114 (115)
T ss_dssp ESTTSCEEEEEHHHHHHHHTTTEEEEEEEEEESSEEEEE
T ss_pred cCCCCCeEEEEeHHhhhhhcCceEEEEEEEeCCCEEEEE
Confidence 555455554421 12245688876655555444443
No 7
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.57 E-value=1.9e-14 Score=115.36 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=83.3
Q ss_pred ccccccccccCcccCChhh-HHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCC--CCceEEEE
Q 024179 115 LVGLDIVSCTIPLRETIPE-FVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~-~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~--~l~~~~~~ 191 (271)
.|||||+.+.+.. ..+.+ ...+++++||++|++++.+..+ ..+.|+..|++|||++||+|.|+.. .+.++++.
T Consensus 4 giGiDIv~i~Ri~-~~~~~~~~~f~~rift~~E~~~~~~~~~---~~~~~a~rwAaKEA~~KAlg~g~~~~~~~~diei~ 79 (126)
T PRK14656 4 GTGVDIVDISRFE-RFVDEGNVALLERIFTPHEQEYCAGKKH---SAQHYALRFAAKEAFLKALGTGLRDGISWHDMEVV 79 (126)
T ss_pred EEeeeEEEchHHH-HHHhhhhhHHHHHhCCHHHHHHHHcCCc---HHHHHHHHhHHHHHHHHHhccCCCCCceeeEEEEE
Confidence 4899999998642 11211 2356799999999999975432 2458999999999999999999865 56889999
Q ss_pred eCCCCCeEEEEcCcc--------cccEEEEEEecCCCeEEEEEEec
Q 024179 192 HTGWGNISVKIDGET--------MTEWKFWLFELGKRHWIKVHIVY 229 (271)
Q Consensus 192 ~~~~~~~~l~~~g~~--------~~~w~~~~~~~~~~~~~Ava~~~ 229 (271)
.++.+.+.+.+.|.. ...|+++ +..+.+|++|+|+..
T Consensus 80 ~~~~g~P~v~l~g~~~~~~~~~~~~~i~vS-iSH~~~~a~A~vi~~ 124 (126)
T PRK14656 80 NDQLGKPELRLYGRALELFAQAGLSKTFLS-LSHDGGCAVAMVVLE 124 (126)
T ss_pred ECCCCCeEEEECHHHHHHHHHcCCCeEEEE-EEcCCCcEEEEEEEE
Confidence 888888888887742 2456664 446789999998764
No 8
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain. This alignment models a domain active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of this family are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialized pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.
Probab=99.51 E-value=1.7e-13 Score=109.98 Aligned_cols=112 Identities=19% Similarity=0.221 Sum_probs=79.9
Q ss_pred cccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCC---CCceEEE
Q 024179 114 CLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY---GLDKVEF 190 (271)
Q Consensus 114 ~~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~---~l~~~~~ 190 (271)
..||||||.+.+... .+.++.++++++||++|++++... +...+...|+.+||+|||++||+|.|+.. +++++++
T Consensus 3 ~~iGiDIe~i~~~~~-~~~~~~~~~~~~~~~~E~~~~~~~-~~~~~~~~~~~~wsaKEA~~Ka~g~g~~~~~~~~~~~~i 80 (128)
T TIGR00556 3 VGIGIDIVEIKRIAE-QVERSGTFAERFFTPSEIEDYCKL-SPKSQTESLAGRWAAKEAFIKALGKGISLGELLFTDIEI 80 (128)
T ss_pred cceeeeEEEehHHHH-HHHhhhhHHHHcCCHHHHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHhccCcCCCCCccceEEE
Confidence 469999999975321 011111567999999999977653 33445678999999999999999999876 6888999
Q ss_pred EeCCCCCeEEEEcCcc--------cccEEEEEEecCCCeEEEEEEe
Q 024179 191 HHTGWGNISVKIDGET--------MTEWKFWLFELGKRHWIKVHIV 228 (271)
Q Consensus 191 ~~~~~~~~~l~~~g~~--------~~~w~~~~~~~~~~~~~Ava~~ 228 (271)
.....+.+.+.+.+.. ...|.+. +..+.+|+.|.++.
T Consensus 81 ~~~~~g~p~~~l~~~~~~~~~~~~~~~~~lS-ish~~~~a~a~~i~ 125 (128)
T TIGR00556 81 VKDLKGAPRVCLIGEAAKDAEKLGVCSVHVS-ISHDKEYAAAQVIL 125 (128)
T ss_pred EeCCCCCcEEEECHHHHHHHHHcCCCeEEEE-EEcCCCcEEEEEEE
Confidence 8877677777666532 1334443 44567888888764
No 9
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.50 E-value=1.8e-13 Score=109.60 Aligned_cols=109 Identities=18% Similarity=0.192 Sum_probs=83.7
Q ss_pred ccccccccccCcccCChhhH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCC--CCCceEEEE
Q 024179 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVA--YGLDKVEFH 191 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~-~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~--~~l~~~~~~ 191 (271)
.|||||..+.+.. ..+.++ ..+++++||++|++++.... .+.+.|...|++|||++||+|+|+. ..++++++.
T Consensus 4 giG~DIv~i~Ri~-~~~~~~~~~fl~rift~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~diei~ 79 (125)
T PRK14660 4 GTGVDIVEVERIA-RSIERHGDRFLRRIYTPGEIAYCTSKA---NRAERLAARFAAKEAVMKAIGTGLREGVRWTDFEVC 79 (125)
T ss_pred EEeEeEEEcHHHH-HHHHHhhhHHHHHhCCHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCcCCCccceEEEEE
Confidence 4899999998642 122333 24678999999999986432 3467899999999999999999985 568999999
Q ss_pred eCCCCCeEEEEcCcc--------cccEEEEEEecCCCeEEEEEEe
Q 024179 192 HTGWGNISVKIDGET--------MTEWKFWLFELGKRHWIKVHIV 228 (271)
Q Consensus 192 ~~~~~~~~l~~~g~~--------~~~w~~~~~~~~~~~~~Ava~~ 228 (271)
.++.+.|.+.+.|.. ...++++ +..+.+|++|+++.
T Consensus 80 ~~~~G~P~v~l~g~~~~~~~~~~~~~i~lS-iSH~~~~A~A~vi~ 123 (125)
T PRK14660 80 RDERGRPTVRLHGRAAEIAAALGATRIHLS-LSHTQEYAVAQVIL 123 (125)
T ss_pred ECCCCCceEEEChHHHHHHHHcCCCeEEEE-EEcCCCcEEEEEEE
Confidence 998888899888742 2456664 45678999999875
No 10
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.49 E-value=3e-13 Score=107.98 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=80.5
Q ss_pred ccccccccccCcccCChhhH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCC--CCceEEEE
Q 024179 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~-~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~--~l~~~~~~ 191 (271)
.|||||+.+.+.. ..+.++ ..+++++||++|++++.+. ..+.+...|++|||++||+|.|+.. .++++++.
T Consensus 4 giGvDIv~i~ri~-~~~~~~~~~f~~rift~~E~~~~~~~-----~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~ 77 (123)
T PRK14657 4 GLGIDITELDRIA-KALERFGDRFARRILHPAELAAMPAA-----PVAFLAGRFAAKEAAVKALGTGFSQGIGPRDIEVG 77 (123)
T ss_pred EEEEeEEEcHHHH-HHHHhcChhHHHhCCCHHHHHHHHcC-----cHHHHHHHHHHHHHHHHHhccCcCCCCCceeEEEE
Confidence 4899999997632 111112 2467899999999998643 2467888999999999999999864 55999999
Q ss_pred eCCCCCeEEEEcCcc--------cccEEEEEEecCCCeEEEEEEe
Q 024179 192 HTGWGNISVKIDGET--------MTEWKFWLFELGKRHWIKVHIV 228 (271)
Q Consensus 192 ~~~~~~~~l~~~g~~--------~~~w~~~~~~~~~~~~~Ava~~ 228 (271)
.++.+.+.+.+.|.. ...|+++. ..+.+|++|+++.
T Consensus 78 ~~~~g~P~v~l~g~~~~~~~~~~~~~~~vSi-SH~~~~aiA~vi~ 121 (123)
T PRK14657 78 VLPAGAPQLVLHGKALARAEALGATSTHVSL-THGRDTAAAVVVL 121 (123)
T ss_pred ECCCCCcEEEEChHHHHHHHHcCCCeEEEEE-EcCCCcEEEEEEE
Confidence 888888888887741 24566644 4578999999875
No 11
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.46 E-value=6e-13 Score=110.49 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=80.9
Q ss_pred ccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCC-CCCceEEEEeC
Q 024179 115 LVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVA-YGLDKVEFHHT 193 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~-~~l~~~~~~~~ 193 (271)
.|||||+.+.+.. ..+++++||++|++++.+. .++.+.|+..|++|||++||+|+|+. ..++++++..
T Consensus 4 GIGiDIveI~Ri~-------e~Fl~RifT~~E~~~~~~~---~~~~~~lAgrwAaKEAv~KAlGtGl~~vsf~DIEI~~- 72 (169)
T PRK14661 4 GVGIDVLEVERVP-------EKFAERILGESEKRLFLTR---KRRREFIAGRFALKEAFFKALGTGLNGHSFTDVEFLE- 72 (169)
T ss_pred EEEEeEEEEEchH-------HHHHHHcCCHHHHHHHHhc---cchhhhHHHHhHHHHHHHHHccCCcCCccceEEEEEc-
Confidence 4899999998642 2457899999999998653 23467888999999999999999984 5789999975
Q ss_pred CCCCeEEEEcCccc--ccEEEEEEecCCCeEEEEEEecCcccc
Q 024179 194 GWGNISVKIDGETM--TEWKFWLFELGKRHWIKVHIVYARKTL 234 (271)
Q Consensus 194 ~~~~~~l~~~g~~~--~~w~~~~~~~~~~~~~Ava~~~~~~~~ 234 (271)
+.+.+.+.+.|... ..++++.. .+. |++|+++....+..
T Consensus 73 ~~G~P~v~l~g~~~~~~~i~VSIS-Hd~-yAiA~VIle~~~~~ 113 (169)
T PRK14661 73 SNGKPVLCVHKDFGFFNYAHVSLS-HDR-FAVALVVLEKRKGD 113 (169)
T ss_pred CCCCeEEEEccccCccceEEEEEe-ccc-cEEEEEEEEecCCC
Confidence 46778888877532 45666443 445 99999887765443
No 12
>COG2977 EntD Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.45 E-value=9.5e-13 Score=113.21 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=106.9
Q ss_pred cCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEccCCCCCcEEecCCCCCCCCceeEEeccccCeE
Q 024179 27 YLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLESDKAGMDFPNFNFNVSHHGDYV 106 (271)
Q Consensus 27 ~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~~~~~i~~~~~~~GKP~l~~~~~~~~~~~~~fniSHs~~~v 106 (271)
.+++.+.+.... ..+++|.+|++||...|++|.+ +| ..+..+.+++.|.|..+. ++-=||||+++++
T Consensus 35 ~~~p~~p~~i~~--av~KRkaEflAgR~cA~~AL~~-lg--~~~~Pi~~G~~raPlWP~--------gvvGSIsH~~~~A 101 (228)
T COG2977 35 LWLPEEPPLIAR--AVPKRKAEFLAGRICARQALRE-LG--VADVPILRGEDRAPLWPA--------GVVGSISHCDGTA 101 (228)
T ss_pred hcCCCCcchhhh--hhHHHHHHHHHHHHHHHHHHHH-hC--CCCCCcccCCCCCCCCCC--------cceEEeeccCCee
Confidence 445544433332 2467899999999999999965 66 346778899999999875 7889999999999
Q ss_pred EEEecCC---cccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhC--cCC
Q 024179 107 AIASEPL---CLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIG--IGV 181 (271)
Q Consensus 107 ~~a~s~~---~~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G--~GL 181 (271)
+++++.. ..||||||.+..-. +-.+++....+++|+..+.+..++ .......++++|||+.||.= .+-
T Consensus 102 ~Avv~~~~~~~~iGIDiE~~~~~~-----~a~ei~~~I~t~~E~~~l~~~~~~--~~~~~tLlFsAKESlfKA~yP~~~r 174 (228)
T COG2977 102 LAVVARRGRVRSIGIDIEPHESLP-----TAREIADIIITPAERARLARAGLA--FLLALTLLFSAKESLFKALYPLVKR 174 (228)
T ss_pred eEeeecccccccceeeccccccCc-----chhHHHHHhCCHHHHHHHhhcccc--hhhhhhhhhhhhHHHHHhhhhhhhh
Confidence 9888752 56999999987432 123567788999999998765332 22334568999999999983 444
Q ss_pred CCCCceEEEEeC
Q 024179 182 AYGLDKVEFHHT 193 (271)
Q Consensus 182 ~~~l~~~~~~~~ 193 (271)
..++.+..+...
T Consensus 175 ~~gFedA~i~~~ 186 (228)
T COG2977 175 WLGFEDAQISSD 186 (228)
T ss_pred hcCchhheeeec
Confidence 455655555543
No 13
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=99.42 E-value=7.7e-13 Score=105.43 Aligned_cols=112 Identities=20% Similarity=0.236 Sum_probs=83.3
Q ss_pred ccccccccccCcccCChhhH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCC--CCceEEEE
Q 024179 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~-~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~--~l~~~~~~ 191 (271)
.|||||..+.+-. ..+..+ ...++++||+.|++......++ ...+...|++|||+.||+|+|+.. .++++++.
T Consensus 4 gIG~DiveI~Ri~-~~~~r~g~~F~erilt~~E~~~~~~~~~~---~~~lAgrfAaKEA~~KAlgtgi~~~~~~~diei~ 79 (127)
T COG0736 4 GIGIDIVEIERIE-KALERFGERFAERILTEEELEYYEKLKSR---AEFLAGRFAAKEAVSKALGTGIGKGVSFKDIEIL 79 (127)
T ss_pred EEeeeEEEeHHHH-HHHhhccchHHHHhCCHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHhccCcccceeeeeEEEE
Confidence 5899999998532 122223 2567999999999998765432 678889999999999999999965 78999999
Q ss_pred eCCCCCeEEEEcCcc------cccEEEEE-EecCCCeEEEEEEecC
Q 024179 192 HTGWGNISVKIDGET------MTEWKFWL-FELGKRHWIKVHIVYA 230 (271)
Q Consensus 192 ~~~~~~~~l~~~g~~------~~~w~~~~-~~~~~~~~~Ava~~~~ 230 (271)
.+..+.+.+.+.|.. ...++++. +..+.+|++|+|+...
T Consensus 80 ~d~~g~P~v~~~~~~~~~~~~~~~~~i~lSISh~~~yA~A~vi~e~ 125 (127)
T COG0736 80 NDELGKPTVRLSGEAAKALEKLGVANIHLSISHDRDYAIAVVILEK 125 (127)
T ss_pred EcCCCCcEEEECHHHHHHHHhcCCceEEEEEEcCCCeEEEEEEEEe
Confidence 988888888887622 11134432 3446789999998654
No 14
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=99.42 E-value=1.9e-12 Score=103.11 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=79.9
Q ss_pred ccccccccccCcccCChhhH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCC--CCceEEEE
Q 024179 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~-~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~--~l~~~~~~ 191 (271)
.||+||..+.+-.. .+..+ ..+++++||+.|++++....+ +.+.|...|++|||++||+|.|+.. .++++++.
T Consensus 3 giG~DIv~i~Ri~~-~~~~~~~~f~~ri~t~~E~~~~~~~~~---~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~ 78 (121)
T TIGR00516 3 GIGLDIVEIARIES-MAGRQKMRFAERILSRSELDQYKELSE---KRKFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIR 78 (121)
T ss_pred EEEEeEEEHHHHHH-HHHhcccchHHHcCCHHHHHHHHhcCc---HHHHHHHHhHHHHHHHHHhccccCCCccceEEEEE
Confidence 48999999976321 11122 246789999999999875432 4678899999999999999999864 56999999
Q ss_pred eCCCCCeEEEEcCc-----ccccEEEEEEecCCCeEEEEEEe
Q 024179 192 HTGWGNISVKIDGE-----TMTEWKFWLFELGKRHWIKVHIV 228 (271)
Q Consensus 192 ~~~~~~~~l~~~g~-----~~~~w~~~~~~~~~~~~~Ava~~ 228 (271)
.++.+.+.+..... ....|+++. ..+.+|++|+|+.
T Consensus 79 ~~~~G~P~v~~~~~~~~~~~~~~i~vSi-SH~~~~A~A~vi~ 119 (121)
T TIGR00516 79 KDQNGKPLITLSYIICTKLSIAAVHVSI-THTKEYAAAQVVI 119 (121)
T ss_pred ECCCcCeEEEEcHHHHHHcCCCEEEEEE-EcCCCcEEEEEEE
Confidence 98878887765421 123455544 4578999999874
No 15
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.42 E-value=2.1e-12 Score=101.73 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=77.5
Q ss_pred ccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCCCCceEEEEeCC
Q 024179 115 LVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAYGLDKVEFHHTG 194 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~l~~~~~~~~~ 194 (271)
.|||||..+.+-.. .-.++++++||++|++++........+.+.+...|++|||+.||+|+|+ .++++++..++
T Consensus 4 ~IGiDIvei~Ri~~----~~~~Fl~Rilt~~E~~~~~~~~~~~~~~~~lAgRfAaKEA~~KAlgtg~--~~~dieI~~~~ 77 (115)
T PRK14658 4 VHGIDIIEWNREEL----NNPLFAKRILIDNELEYYFQLNSSREKKRYLASVFACKEAVMKALKLKY--GYGDILILKTE 77 (115)
T ss_pred eEEEEEEEehHHhh----hChhHHHHcCCHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhCCCC--CceEEEEEECC
Confidence 58999999986421 1124578999999999986421112245778999999999999999997 48999999887
Q ss_pred CCCeEEEEcCcccccEEEEEEecCCCeEEEEEEecC
Q 024179 195 WGNISVKIDGETMTEWKFWLFELGKRHWIKVHIVYA 230 (271)
Q Consensus 195 ~~~~~l~~~g~~~~~w~~~~~~~~~~~~~Ava~~~~ 230 (271)
.+.+.+ +.......++++ +..+.+|++|+++...
T Consensus 78 ~G~p~~-~~~~~~~~i~lS-ISH~~~~AiA~vI~~~ 111 (115)
T PRK14658 78 NQRQVY-LNKILIKELELS-ISYTETYIVASVVGLI 111 (115)
T ss_pred CCCeEE-EecCCCcEEEEE-EEcCCCeEEEEEEEEe
Confidence 665544 333223445554 4567899999988654
No 16
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.40 E-value=8.3e-13 Score=105.50 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=81.9
Q ss_pred ccccccccccCcccCChhhH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCC--CCceEEEE
Q 024179 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~-~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~--~l~~~~~~ 191 (271)
.|||||+.+.+... .+..+ ..+++++||++|++++.. ...+.+.|...|++|||+.||+|.|+.. .++++++.
T Consensus 4 giGiDi~~i~r~~~-~~~~~~~~~~~r~l~~~E~~~~~~---~~~~~~~la~r~aaKEA~~Kalg~~~~~~~~~~~i~i~ 79 (126)
T PRK00070 4 GIGIDIVEIERIEK-ALERTGDRFAERVLTPKERAKFKS---GKRPAEFLAGRFAAKEAFSKALGTGIGKGVSFRDIEVL 79 (126)
T ss_pred EEEEeEEEhHHHHH-HHHhcchhHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHhccCcccceeeeEEEEE
Confidence 48999999986421 11122 256789999999999843 2335678889999999999999999864 58999999
Q ss_pred eCCCCCeEEEEcCcc--------cccEEEEEEecCCCeEEEEEEec
Q 024179 192 HTGWGNISVKIDGET--------MTEWKFWLFELGKRHWIKVHIVY 229 (271)
Q Consensus 192 ~~~~~~~~l~~~g~~--------~~~w~~~~~~~~~~~~~Ava~~~ 229 (271)
.+..+.+.+.+.|.. ...++++ +..+.+|++|+|+..
T Consensus 80 ~~~~G~P~l~l~g~~~~~~~~~~~~~~~iS-ISH~~~~A~A~vi~~ 124 (126)
T PRK00070 80 NDELGKPIVRLSGEAAERLEKLGGARIHLS-ISHDGDYAVAFVILE 124 (126)
T ss_pred ECCCCCcEEEEChHHHHHHHHcCCCEEEEE-EEcCCCcEEEEEEEE
Confidence 888788888876631 2346554 456789999998754
No 17
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.29 E-value=2.7e-11 Score=95.72 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=70.5
Q ss_pred HHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCC--CCCceEEEEeCCCCCeEEEEcCcc----ccc
Q 024179 136 QNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVA--YGLDKVEFHHTGWGNISVKIDGET----MTE 209 (271)
Q Consensus 136 ~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~--~~l~~~~~~~~~~~~~~l~~~g~~----~~~ 209 (271)
++++++||+.|++++.+..+ ..+.|...|++|||++||+|+|+. ..++++++..++.+.+.+.+.|.. ...
T Consensus 19 ~f~~rift~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlg~g~~~~i~~~dieI~~~~~G~P~i~l~g~~~~~~~~~ 95 (116)
T PRK14663 19 KFLEKILTPEEIELCLQKPQ---PVASIAGRFAAKEAVVKALGTGFSQGVHWKSFAILNDAAGRPFVKVIDDGCLPPGCV 95 (116)
T ss_pred HHHHHhCCHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHccCCCCCceeeEEEEEECCCCCcEEEEchhHhhcCCCE
Confidence 45689999999999865432 357899999999999999999985 467999999988888888877642 233
Q ss_pred EEEEEEecCCCeEEEEEEec
Q 024179 210 WKFWLFELGKRHWIKVHIVY 229 (271)
Q Consensus 210 w~~~~~~~~~~~~~Ava~~~ 229 (271)
+++ ++..+.+|++|+|+..
T Consensus 96 i~v-SiSH~~~~a~A~vi~~ 114 (116)
T PRK14663 96 IKI-SISHDRHSAVATALIE 114 (116)
T ss_pred EEE-EEEcCCCeEEEEEEEE
Confidence 555 4456789999998754
No 18
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.29 E-value=1.7e-11 Score=97.32 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=78.0
Q ss_pred ccccccccccCcccCChhhH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhCcCCCCCCceEEEEeC
Q 024179 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAYGLDKVEFHHT 193 (271)
Q Consensus 115 ~vGIDIE~~~~~~~~~~~~~-~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~l~~~~~~~~ 193 (271)
.||+||..+.+-. ..+.++ ..+++++||++|++++....+ +.+.+...|++|||++||+|+|+ .++++++..+
T Consensus 4 gIG~DIv~i~Ri~-~~~~r~~~~Fl~Ri~t~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlg~~~--~~~diei~~~ 77 (120)
T PRK14662 4 AIGHDLVEIARIR-RVLERHGERALERLFHPEELAYCLAKAD---PAPSLAARFAAKEAFQKCWPESH--GWREVWVERE 77 (120)
T ss_pred EEEeeeEEhHHHH-HHHHhhhhHHHHHcCCHHHHHHHHhcCC---cchhhhhHhHHHHHHHHHhcCCC--CceEEEEEcC
Confidence 4899999997632 112223 245689999999999865333 35688899999999999999985 5899999775
Q ss_pred CCCCeEEEEcCcc-------cccEEEEEEecCCCeEEEEEEec
Q 024179 194 GWGNISVKIDGET-------MTEWKFWLFELGKRHWIKVHIVY 229 (271)
Q Consensus 194 ~~~~~~l~~~g~~-------~~~w~~~~~~~~~~~~~Ava~~~ 229 (271)
.+.|.+.+.|.. ...+++ ++..+.+|++|+|+..
T Consensus 78 -~G~P~v~l~g~~~~~~~~~~~~~~l-SiSH~~~~A~A~vi~e 118 (120)
T PRK14662 78 -GARPVLGFAPKIAARMEEEGWVAHL-SLSHEKEHALAVVVLE 118 (120)
T ss_pred -CCCcEEEECHHHHHHHHhcCCeEEE-EEecCCCeEEEEEEEE
Confidence 678888887741 113433 4456789999998754
No 19
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.05 E-value=4.7e-10 Score=89.51 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=74.4
Q ss_pred CeEEEEEECCCCCCChhc--HHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCceeEcc
Q 024179 4 GVQRWVVDISKWDPTPHD--FSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITINR 75 (271)
Q Consensus 4 ~v~vw~~~~~~~~~~~~~--~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~------~~~~i~~~~ 75 (271)
+|.+=++++.+....... -..+.++|+++|++++. ...++.+|+++|+++|.++.+.+|. .+.++++.+
T Consensus 4 giGiDi~~i~r~~~~~~~~~~~~~~r~l~~~E~~~~~---~~~~~~~~la~r~aaKEA~~Kalg~~~~~~~~~~~i~i~~ 80 (126)
T PRK00070 4 GIGIDIVEIERIEKALERTGDRFAERVLTPKERAKFK---SGKRPAEFLAGRFAAKEAFSKALGTGIGKGVSFRDIEVLN 80 (126)
T ss_pred EEEEeEEEhHHHHHHHHhcchhHHHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHhccCcccceeeeEEEEEE
Confidence 456666666654211111 13467899999999983 3456789999999999999988874 367899999
Q ss_pred CCCCCcEEecCCC------CCCCCceeEEeccccCeEEEE
Q 024179 76 TIEGKPYLESDKA------GMDFPNFNFNVSHHGDYVAIA 109 (271)
Q Consensus 76 ~~~GKP~l~~~~~------~~~~~~~~fniSHs~~~v~~a 109 (271)
+++|||++...+. ....+.+++||||+++++++.
T Consensus 81 ~~~G~P~l~l~g~~~~~~~~~~~~~~~iSISH~~~~A~A~ 120 (126)
T PRK00070 81 DELGKPIVRLSGEAAERLEKLGGARIHLSISHDGDYAVAF 120 (126)
T ss_pred CCCCCcEEEEChHHHHHHHHcCCCEEEEEEEcCCCcEEEE
Confidence 9999999973210 001356899999999998643
No 20
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.99 E-value=5.5e-09 Score=82.29 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=80.7
Q ss_pred CCCCeEEEEEECCCCCCChhcHHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCceeEccCCC
Q 024179 1 MEKGVQRWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG--IPFEEITINRTIE 78 (271)
Q Consensus 1 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g--~~~~~i~~~~~~~ 78 (271)
|--+|.+=++++++.. ...-..+.+.|+++|++.+...+...++.+||+||+.++.++.+.+| +.+.++++.+++.
T Consensus 1 m~~~IGiDIvei~Ri~--~~~~~Fl~Rilt~~E~~~~~~~~~~~~~~~~lAgRfAaKEA~~KAlgtg~~~~dieI~~~~~ 78 (115)
T PRK14658 1 MKLVHGIDIIEWNREE--LNNPLFAKRILIDNELEYYFQLNSSREKKRYLASVFACKEAVMKALKLKYGYGDILILKTEN 78 (115)
T ss_pred CeeeEEEEEEEehHHh--hhChhHHHHcCCHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEECCC
Confidence 4456777788888764 12224688999999999998765445678999999999999999886 4688999999999
Q ss_pred CCcEEecCCCCCCCCceeEEeccccCeEE
Q 024179 79 GKPYLESDKAGMDFPNFNFNVSHHGDYVA 107 (271)
Q Consensus 79 GKP~l~~~~~~~~~~~~~fniSHs~~~v~ 107 (271)
|+|++.... ....+++||||++++++
T Consensus 79 G~p~~~~~~---~~~~i~lSISH~~~~Ai 104 (115)
T PRK14658 79 QRQVYLNKI---LIKELELSISYTETYIV 104 (115)
T ss_pred CCeEEEecC---CCcEEEEEEEcCCCeEE
Confidence 999986532 23568999999999985
No 21
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=98.70 E-value=6.5e-08 Score=77.23 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=76.6
Q ss_pred CCeEEEEEECCCCCCChhcH--HHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCceeEc
Q 024179 3 KGVQRWVVDISKWDPTPHDF--SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITIN 74 (271)
Q Consensus 3 ~~v~vw~~~~~~~~~~~~~~--~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~------~~~~i~~~ 74 (271)
-+|.+=++.+.+.......+ ..+.+.|++.|++...++..+ .+||++|+.++.++++.+|. ...++++.
T Consensus 3 ~gIG~DiveI~Ri~~~~~r~g~~F~erilt~~E~~~~~~~~~~---~~~lAgrfAaKEA~~KAlgtgi~~~~~~~diei~ 79 (127)
T COG0736 3 IGIGIDIVEIERIEKALERFGERFAERILTEEELEYYEKLKSR---AEFLAGRFAAKEAVSKALGTGIGKGVSFKDIEIL 79 (127)
T ss_pred eEEeeeEEEeHHHHHHHhhccchHHHHhCCHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHhccCcccceeeeeEEEE
Confidence 35666677777542222222 367789999999999887643 89999999999999998875 56789999
Q ss_pred cCCCCCcEEecCCCC------CCCCceeEEeccccCeEE
Q 024179 75 RTIEGKPYLESDKAG------MDFPNFNFNVSHHGDYVA 107 (271)
Q Consensus 75 ~~~~GKP~l~~~~~~------~~~~~~~fniSHs~~~v~ 107 (271)
+++.|||++...+.- .....+++||||+.++++
T Consensus 80 ~d~~g~P~v~~~~~~~~~~~~~~~~~i~lSISh~~~yA~ 118 (127)
T COG0736 80 NDELGKPTVRLSGEAAKALEKLGVANIHLSISHDRDYAI 118 (127)
T ss_pred EcCCCCcEEEECHHHHHHHHhcCCceEEEEEEcCCCeEE
Confidence 999999999874200 001359999999999984
No 22
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.66 E-value=1.5e-07 Score=74.91 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=77.4
Q ss_pred CCeEEEEEECCCCCCChhc--HHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCceeEc
Q 024179 3 KGVQRWVVDISKWDPTPHD--FSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITIN 74 (271)
Q Consensus 3 ~~v~vw~~~~~~~~~~~~~--~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~------~~~~i~~~ 74 (271)
-+|.+=++++.+....... -..+.+.|+++|+..+.++.....+.+++++|+.+|.++.+.+|. .+.++.+.
T Consensus 3 ~giGiDiv~i~ri~~~~~~~~~~f~~r~ft~~E~~~~~~~~~~~~~~~~la~rwaaKEA~~KAlg~g~~~~~~~~di~i~ 82 (122)
T PRK14659 3 VGIGTDIVYIPRILNLLKKFGNKFLNRVFSEKEIEDSLKYTSQEARARHFAKRFAAKEAYVKALGTGFGRGIKMKDISVY 82 (122)
T ss_pred EEEEeeEEEehHHHHHHHHhhHHHHHhcCCHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhccCcCcCccccEEEEE
Confidence 3566666777654211111 125788999999999877665566889999999999999888864 35789999
Q ss_pred cCCCCCcEEecCCCCCCCCceeEEeccccCeEEE
Q 024179 75 RTIEGKPYLESDKAGMDFPNFNFNVSHHGDYVAI 108 (271)
Q Consensus 75 ~~~~GKP~l~~~~~~~~~~~~~fniSHs~~~v~~ 108 (271)
.++.|+|++...+.. ....+++||||+++|++.
T Consensus 83 ~~~~g~P~v~l~~~~-~~~~i~vSiSh~~~ya~A 115 (122)
T PRK14659 83 NDLYGKPQITVSKSN-IDHKIELSLSDDGDYAIA 115 (122)
T ss_pred ECCCCCeEEEECCcc-cccEEEEEEEcCCCcEEE
Confidence 999999999754211 124689999999999863
No 23
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=98.61 E-value=3.2e-07 Score=72.98 Aligned_cols=82 Identities=17% Similarity=0.380 Sum_probs=65.0
Q ss_pred HHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCceeEccCCCCCcEEecCC---CCCCCCc
Q 024179 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITINRTIEGKPYLESDK---AGMDFPN 94 (271)
Q Consensus 24 ~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~------~~~~i~~~~~~~GKP~l~~~~---~~~~~~~ 94 (271)
.+.+.|+++|++.+.+.. ++.+++++|+.+|.++.+.+|. ...++++.+++.|+|++.... .......
T Consensus 25 f~~ri~t~~E~~~~~~~~---~~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~~~~~G~P~v~~~~~~~~~~~~~~ 101 (121)
T TIGR00516 25 FAERILSRSELDQYKELS---EKRKFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPLITLSYIICTKLSIAA 101 (121)
T ss_pred hHHHcCCHHHHHHHHhcC---cHHHHHHHHhHHHHHHHHHhccccCCCccceEEEEEECCCcCeEEEEcHHHHHHcCCCE
Confidence 567899999999887653 4789999999999999888863 457899999999999996320 0011356
Q ss_pred eeEEeccccCeEEE
Q 024179 95 FNFNVSHHGDYVAI 108 (271)
Q Consensus 95 ~~fniSHs~~~v~~ 108 (271)
+++||||++++++.
T Consensus 102 i~vSiSH~~~~A~A 115 (121)
T TIGR00516 102 VHVSITHTKEYAAA 115 (121)
T ss_pred EEEEEEcCCCcEEE
Confidence 89999999999864
No 24
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.60 E-value=2.4e-07 Score=74.08 Aligned_cols=103 Identities=13% Similarity=0.236 Sum_probs=75.1
Q ss_pred CCeEEEEEECCCCCCChhcH--HHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCceeEc
Q 024179 3 KGVQRWVVDISKWDPTPHDF--SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITIN 74 (271)
Q Consensus 3 ~~v~vw~~~~~~~~~~~~~~--~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~------~~~~i~~~ 74 (271)
-+|.+=++++.+.......+ ..+.+.|+++|++.+... .++.+++++|+..|.++.+.+|. .+.++++.
T Consensus 3 ~giG~DIv~i~Ri~~~~~~~~~~fl~rift~~E~~~~~~~---~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~diei~ 79 (125)
T PRK14660 3 LGTGVDIVEVERIARSIERHGDRFLRRIYTPGEIAYCTSK---ANRAERLAARFAAKEAVMKAIGTGLREGVRWTDFEVC 79 (125)
T ss_pred EEEeEeEEEcHHHHHHHHHhhhHHHHHhCCHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCcCCCccceEEEEE
Confidence 35666677777642111111 256789999999998643 35788999999999999888863 56899999
Q ss_pred cCCCCCcEEecCCC------CCCCCceeEEeccccCeEEE
Q 024179 75 RTIEGKPYLESDKA------GMDFPNFNFNVSHHGDYVAI 108 (271)
Q Consensus 75 ~~~~GKP~l~~~~~------~~~~~~~~fniSHs~~~v~~ 108 (271)
+++.|||++.-.+. ......+++||||++++++.
T Consensus 80 ~~~~G~P~v~l~g~~~~~~~~~~~~~i~lSiSH~~~~A~A 119 (125)
T PRK14660 80 RDERGRPTVRLHGRAAEIAAALGATRIHLSLSHTQEYAVA 119 (125)
T ss_pred ECCCCCceEEEChHHHHHHHHcCCCeEEEEEEcCCCcEEE
Confidence 99999999965321 01134689999999999853
No 25
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.48 E-value=1.2e-06 Score=69.19 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=63.7
Q ss_pred HHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCceeEccCCCCCcEEecCCCC--CCCCce
Q 024179 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITINRTIEGKPYLESDKAG--MDFPNF 95 (271)
Q Consensus 24 ~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~------~~~~i~~~~~~~GKP~l~~~~~~--~~~~~~ 95 (271)
.+.+.|+++|++.+.+.. +..+++++|+..+.++.+.+|. .+.++++..++.|+|++...+.. .....+
T Consensus 20 f~~rift~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~g~~~~i~~~dieI~~~~~G~P~i~l~g~~~~~~~~~i 96 (116)
T PRK14663 20 FLEKILTPEEIELCLQKP---QPVASIAGRFAAKEAVVKALGTGFSQGVHWKSFAILNDAAGRPFVKVIDDGCLPPGCVI 96 (116)
T ss_pred HHHHhCCHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHccCCCCCceeeEEEEEECCCCCcEEEEchhHhhcCCCEE
Confidence 467899999998876543 3568999999999999888754 45789999999999999643210 012468
Q ss_pred eEEeccccCeEEE
Q 024179 96 NFNVSHHGDYVAI 108 (271)
Q Consensus 96 ~fniSHs~~~v~~ 108 (271)
++||||+++|++.
T Consensus 97 ~vSiSH~~~~a~A 109 (116)
T PRK14663 97 KISISHDRHSAVA 109 (116)
T ss_pred EEEEEcCCCeEEE
Confidence 9999999999853
No 26
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.43 E-value=9.2e-07 Score=70.25 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=73.6
Q ss_pred CCCCeEEEEEECCCCCCChhcH--HHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCceeEccC
Q 024179 1 MEKGVQRWVVDISKWDPTPHDF--SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG--IPFEEITINRT 76 (271)
Q Consensus 1 ~~~~v~vw~~~~~~~~~~~~~~--~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g--~~~~~i~~~~~ 76 (271)
|--+|.+=++++++.......+ ..+.+.|+++|++.+.... ++.+++++|+..+.++.+.+| +.+.+|++.++
T Consensus 1 Mi~gIG~DIv~i~Ri~~~~~r~~~~Fl~Ri~t~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~~~~~~diei~~~ 77 (120)
T PRK14662 1 MIVAIGHDLVEIARIRRVLERHGERALERLFHPEELAYCLAKA---DPAPSLAARFAAKEAFQKCWPESHGWREVWVERE 77 (120)
T ss_pred CeeEEEeeeEEhHHHHHHHHhhhhHHHHHcCCHHHHHHHHhcC---CcchhhhhHhHHHHHHHHHhcCCCCceEEEEEcC
Confidence 3345667777777642111111 2567899999999876533 467899999999999988876 67889999886
Q ss_pred CCCCcEEecCCCC-----CCCCceeEEeccccCeEEE
Q 024179 77 IEGKPYLESDKAG-----MDFPNFNFNVSHHGDYVAI 108 (271)
Q Consensus 77 ~~GKP~l~~~~~~-----~~~~~~~fniSHs~~~v~~ 108 (271)
.|||++.-.+.- .....+++||||++++++.
T Consensus 78 -~G~P~v~l~g~~~~~~~~~~~~~~lSiSH~~~~A~A 113 (120)
T PRK14662 78 -GARPVLGFAPKIAARMEEEGWVAHLSLSHEKEHALA 113 (120)
T ss_pred -CCCcEEEECHHHHHHHHhcCCeEEEEEecCCCeEEE
Confidence 899999643210 0013579999999999853
No 27
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.33 E-value=2.3e-06 Score=68.30 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=71.7
Q ss_pred CeEEEEEECCCCCCChhc--HHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCceeEcc
Q 024179 4 GVQRWVVDISKWDPTPHD--FSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITINR 75 (271)
Q Consensus 4 ~v~vw~~~~~~~~~~~~~--~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~------~~~~i~~~~ 75 (271)
+|.+=++++.+....... -..+.+.|+++|++.+.+. ..+++++|+..|.++.+.+|. .+.++++..
T Consensus 4 giGvDIv~i~ri~~~~~~~~~~f~~rift~~E~~~~~~~-----~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~~ 78 (123)
T PRK14657 4 GLGIDITELDRIAKALERFGDRFARRILHPAELAAMPAA-----PVAFLAGRFAAKEAAVKALGTGFSQGIGPRDIEVGV 78 (123)
T ss_pred EEEEeEEEcHHHHHHHHhcChhHHHhCCCHHHHHHHHcC-----cHHHHHHHHHHHHHHHHHhccCcCCCCCceeEEEEE
Confidence 456666666653211011 1246789999999998653 478999999999998888763 458999999
Q ss_pred CCCCCcEEecCCC------CCCCCceeEEeccccCeEEE
Q 024179 76 TIEGKPYLESDKA------GMDFPNFNFNVSHHGDYVAI 108 (271)
Q Consensus 76 ~~~GKP~l~~~~~------~~~~~~~~fniSHs~~~v~~ 108 (271)
+++|+|++...+. ......+++||||++++++.
T Consensus 79 ~~~g~P~v~l~g~~~~~~~~~~~~~~~vSiSH~~~~aiA 117 (123)
T PRK14657 79 LPAGAPQLVLHGKALARAEALGATSTHVSLTHGRDTAAA 117 (123)
T ss_pred CCCCCcEEEEChHHHHHHHHcCCCeEEEEEEcCCCcEEE
Confidence 9999999963210 11235689999999999854
No 28
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.30 E-value=5.1e-06 Score=66.53 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=75.1
Q ss_pred CCCCeEEEEEECCCCCCChh--cHHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCcee
Q 024179 1 MEKGVQRWVVDISKWDPTPH--DFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEIT 72 (271)
Q Consensus 1 ~~~~v~vw~~~~~~~~~~~~--~~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~------~~~~i~ 72 (271)
|--+|.+=++++.+...... ....+.+.|+++|++.+.... +..+++++|+.+|.++.+.+|. .+.+++
T Consensus 1 mi~giGiDIv~i~Ri~~~~~~~~~~f~~rift~~E~~~~~~~~---~~~~~~a~rwAaKEA~~KAlg~g~~~~~~~~die 77 (126)
T PRK14656 1 MIFGTGVDIVDISRFERFVDEGNVALLERIFTPHEQEYCAGKK---HSAQHYALRFAAKEAFLKALGTGLRDGISWHDME 77 (126)
T ss_pred CeeEEeeeEEEchHHHHHHhhhhhHHHHHhCCHHHHHHHHcCC---cHHHHHHHHhHHHHHHHHHhccCCCCCceeeEEE
Confidence 44456677777776421111 123577899999999987643 3466899999999999888864 357899
Q ss_pred EccCCCCCcEEecCCC------CCCCCceeEEeccccCeEEE
Q 024179 73 INRTIEGKPYLESDKA------GMDFPNFNFNVSHHGDYVAI 108 (271)
Q Consensus 73 ~~~~~~GKP~l~~~~~------~~~~~~~~fniSHs~~~v~~ 108 (271)
+.+++.|+|++..... ......+++||||++++++.
T Consensus 78 i~~~~~g~P~v~l~g~~~~~~~~~~~~~i~vSiSH~~~~a~A 119 (126)
T PRK14656 78 VVNDQLGKPELRLYGRALELFAQAGLSKTFLSLSHDGGCAVA 119 (126)
T ss_pred EEECCCCCeEEEECHHHHHHHHHcCCCeEEEEEEcCCCcEEE
Confidence 9999999999964210 01235789999999999853
No 29
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.09 E-value=3.6e-05 Score=64.26 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCCeEEEEEECCCCCCChhcHHHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC-----CCCceeEcc
Q 024179 1 MEKGVQRWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI-----PFEEITINR 75 (271)
Q Consensus 1 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~-----~~~~i~~~~ 75 (271)
|=-+|.+=++++++.. -..+.+.|+++|++.+.. ..++.+++++|+.+|.++.+.+|. .+.++++.
T Consensus 1 MI~GIGiDIveI~Ri~-----e~Fl~RifT~~E~~~~~~---~~~~~~~lAgrwAaKEAv~KAlGtGl~~vsf~DIEI~- 71 (169)
T PRK14661 1 MIVGVGIDVLEVERVP-----EKFAERILGESEKRLFLT---RKRRREFIAGRFALKEAFFKALGTGLNGHSFTDVEFL- 71 (169)
T ss_pred CeeEEEEeEEEEEchH-----HHHHHHcCCHHHHHHHHh---ccchhhhHHHHhHHHHHHHHHccCCcCCccceEEEEE-
Confidence 3345667777777752 146789999999998765 245788999999999999888763 57799996
Q ss_pred CCCCCcEEecCCCCCCCCceeEEeccccCeEE
Q 024179 76 TIEGKPYLESDKAGMDFPNFNFNVSHHGDYVA 107 (271)
Q Consensus 76 ~~~GKP~l~~~~~~~~~~~~~fniSHs~~~v~ 107 (271)
++.|+|++.....-.....+++||||++ +++
T Consensus 72 ~~~G~P~v~l~g~~~~~~~i~VSISHd~-yAi 102 (169)
T PRK14661 72 ESNGKPVLCVHKDFGFFNYAHVSLSHDR-FAV 102 (169)
T ss_pred cCCCCeEEEEccccCccceEEEEEeccc-cEE
Confidence 5799999976321111246899999998 653
No 30
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain. This alignment models a domain active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of this family are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialized pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.
Probab=97.57 E-value=0.0017 Score=51.83 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=73.8
Q ss_pred CCCCeEEEEEECCCCCCChhcH----HHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCC-------CCC
Q 024179 1 MEKGVQRWVVDISKWDPTPHDF----SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI-------PFE 69 (271)
Q Consensus 1 ~~~~v~vw~~~~~~~~~~~~~~----~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~-------~~~ 69 (271)
|-.+|.+=+..+.+. .... ....++|+++|++.+.... ...+.+++++++.+|.++.+.+|. ...
T Consensus 1 ~~~~iGiDIe~i~~~---~~~~~~~~~~~~~~~~~~E~~~~~~~~-~~~~~~~~~~~wsaKEA~~Ka~g~g~~~~~~~~~ 76 (128)
T TIGR00556 1 DIVGIGIDIVEIKRI---AEQVERSGTFAERFFTPSEIEDYCKLS-PKSQTESLAGRWAAKEAFIKALGKGISLGELLFT 76 (128)
T ss_pred CCcceeeeEEEehHH---HHHHHhhhhHHHHcCCHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHhccCcCCCCCccc
Confidence 556666666666642 2222 3477899999999777653 345677999999999998887753 356
Q ss_pred ceeEccCCCCCcEEecCCC------CCCCCceeEEeccccCeEEEE
Q 024179 70 EITINRTIEGKPYLESDKA------GMDFPNFNFNVSHHGDYVAIA 109 (271)
Q Consensus 70 ~i~~~~~~~GKP~l~~~~~------~~~~~~~~fniSHs~~~v~~a 109 (271)
++.+..+++|+|++...+. ......++.||||+.+++.+-
T Consensus 77 ~~~i~~~~~g~p~~~l~~~~~~~~~~~~~~~~~lSish~~~~a~a~ 122 (128)
T TIGR00556 77 DIEIVKDLKGAPRVCLIGEAAKDAEKLGVCSVHVSISHDKEYAAAQ 122 (128)
T ss_pred eEEEEeCCCCCcEEEECHHHHHHHHHcCCCeEEEEEEcCCCcEEEE
Confidence 7899999999999864210 001245789999999998643
No 31
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP []. This superfamily consists of two subtypes: The ACPS type such as ACPS_ECOLI and the Sfp type such as SFP_BACSU. The structure of the Sfp type is known [], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion. ; GO: 0000287 magnesium ion binding, 0008897 holo-[acyl-carrier-protein] synthase activity, 0009059 macromolecule biosynthetic process; PDB: 3QMN_S 3GWM_A 3NFD_D 3NE9_C 1FTH_C 1FTE_C 1FTF_B 3HYK_B 2WDY_A 2WDS_A ....
Probab=96.73 E-value=0.0024 Score=49.23 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=66.2
Q ss_pred HHHhcCCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhC-C-----CCCceeEccCCCCCcEEec----CCCCCCC
Q 024179 23 SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG-I-----PFEEITINRTIEGKPYLES----DKAGMDF 92 (271)
Q Consensus 23 ~~~~~~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g-~-----~~~~i~~~~~~~GKP~l~~----~~~~~~~ 92 (271)
..+...++++|++.+.+... .++.+++...+.+|.++.+.+| . ...++.+...+.|+|++.. .......
T Consensus 19 ~~~~~~~t~~E~~~l~~~~~-~~~~~~~~~~Wt~KEA~~Ka~g~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (115)
T PF01648_consen 19 KFAERFFTPEELEWLRSLPS-EERLQAFTLLWTAKEAVYKALGLTGSLDLSFREIELHKPPGGRPSLSLWASWIFDGDKI 97 (115)
T ss_dssp HHHHHHS-HHHHHHHHCTSS-HHHHHHHHHHHHHHHHHHHHHTTSTSSTSHGGGEEEEESTTSCEEEEEHHHHHHHHTTT
T ss_pred HHHHHhCCHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHHHhcccCCcccccEEEEEEcCCCCCeEEEEeHHhhhhhcCc
Confidence 45667899999999999876 7889999999999999988888 2 2457888889999999752 0000113
Q ss_pred CceeEEeccccCeEEEEe
Q 024179 93 PNFNFNVSHHGDYVAIAS 110 (271)
Q Consensus 93 ~~~~fniSHs~~~v~~a~ 110 (271)
..++.++||.++++++.|
T Consensus 98 ~~~~~~~~~~~~~~~a~v 115 (115)
T PF01648_consen 98 WRFHVSISHDEDYAAAFV 115 (115)
T ss_dssp EEEEEEEEEESSEEEEEE
T ss_pred eEEEEEEEeCCCEEEEEC
Confidence 468889999999998765
No 32
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=86.21 E-value=2.2 Score=28.00 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEccCCCCCcEEec
Q 024179 28 LLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLES 85 (271)
Q Consensus 28 ~L~~~E~~r~~r~~~~~dr~~~l~~R~llr~~l~~~~g~~~~~i~~~~~~~GKP~l~~ 85 (271)
+|+++|...+..|+++..+.++|-. .| |.+..++.|+|.+.-
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~-----------~G-----i~~~~~~~G~p~V~r 43 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRR-----------NG-----IPFVVRADGRPIVTR 43 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHH-----------CC-----CeeEECCCCCEEeeH
Confidence 6999999999999988777666532 24 457788999998863
No 33
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=77.52 E-value=1.2 Score=33.42 Aligned_cols=16 Identities=44% Similarity=1.047 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhCc
Q 024179 164 YRYWCLKEAYVKAIGI 179 (271)
Q Consensus 164 ~~~Wt~KEA~~Ka~G~ 179 (271)
+.-||+||||+.|+|.
T Consensus 56 Le~~aLKeafL~Al~~ 71 (103)
T PF11572_consen 56 LESWALKEAFLRALGM 71 (103)
T ss_dssp E-SHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 4469999999999985
No 34
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=30.94 E-value=23 Score=36.47 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=50.0
Q ss_pred CceeEEeccccCeEEEEecCCcccccccccccCcccCChhhHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 024179 93 PNFNFNVSHHGDYVAIASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEA 172 (271)
Q Consensus 93 ~~~~fniSHs~~~v~~a~s~~~~vGIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~l~~~~~~~~~~~~f~~~Wt~KEA 172 (271)
..+..+-.|.|+.+++-++. -.-|||.|+++++. +-+-..+++|.+.+. +.+--.--|.-=++-+|-
T Consensus 464 G~I~L~A~~~gn~ivIev~D-DG~Gid~ekI~~KA---------iErGli~~~~a~~lS---d~Ei~~LIF~PGFSTa~~ 530 (716)
T COG0643 464 GTITLSAYHEGNNIVIEVSD-DGAGIDREKIREKA---------IERGLITEEEAETLS---DEEILNLIFAPGFSTAEQ 530 (716)
T ss_pred ceEEEEEEcCCCeEEEEEee-CCCCCCHHHHHHHH---------HHcCCCChHHhccCC---HHHHHHHHhcCCCCcchh
Confidence 36899999999999999986 45799999997531 012234444433211 000001112223577888
Q ss_pred HHhhhCcCCCCCC
Q 024179 173 YVKAIGIGVAYGL 185 (271)
Q Consensus 173 ~~Ka~G~GL~~~l 185 (271)
+.-..|.|.+.|.
T Consensus 531 VtdvSGRGVGMDV 543 (716)
T COG0643 531 VTDVSGRGVGMDV 543 (716)
T ss_pred hhcccCCccCHHH
Confidence 8888888888663
No 35
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=28.99 E-value=2.1e+02 Score=21.27 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=29.8
Q ss_pred HHHhc-cCCHHHHHHHHhcCCchHHHHHHHH---HH--HHHHHHHhhhC
Q 024179 136 QNFSS-YFSSFEWDNILNAGTSDEILIEFYR---YW--CLKEAYVKAIG 178 (271)
Q Consensus 136 ~~~~~-~fs~~E~~~l~~~~~~~~~~~~f~~---~W--t~KEA~~Ka~G 178 (271)
.+..+ ++|.+|.+.+.+..+++++.+..+. -| +.||.+++++.
T Consensus 23 ~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG~~~k~~F~~iL~ 71 (85)
T cd08324 23 NLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEYFLYLLQ 71 (85)
T ss_pred HHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 44544 9999999999887777777776554 34 35566665543
No 36
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.93 E-value=1.6e+02 Score=25.06 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=37.4
Q ss_pred HHHHHhCCCC-CceeEccCCCCCcEEecCCCCCCCCceeEEeccccCeEEEEecCCcccccccccccCc
Q 024179 59 LVHQVLGIPF-EEITINRTIEGKPYLESDKAGMDFPNFNFNVSHHGDYVAIASEPLCLVGLDIVSCTIP 126 (271)
Q Consensus 59 ~l~~~~g~~~-~~i~~~~~~~GKP~l~~~~~~~~~~~~~fniSHs~~~v~~a~s~~~~vGIDIE~~~~~ 126 (271)
+..+.+|--. +.+.-.-++.||||+-+- +.==.++-.+++|+.+.+...-.|+ -|.+=+|
T Consensus 95 lYekRfgpYf~~PvVAGl~~~~kPfIc~m-------D~IGc~~~~~DFVvsGTa~e~L~Gm-CE~ly~p 155 (204)
T KOG0180|consen 95 LYEKRFGPYFTEPVVAGLDDDNKPFICGM-------DLIGCIDAPKDFVVSGTASEQLYGM-CEALYEP 155 (204)
T ss_pred HHHhhcCCcccceeEeccCCCCCeeEeec-------ccccCcCccCCeEEecchHHHHHHH-HHHhcCC
Confidence 3344556322 223344567999999862 3344677788999988877666676 4544444
No 37
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.87 E-value=76 Score=22.57 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=18.9
Q ss_pred eeEEeccccCeEEEEecCCcccccc
Q 024179 95 FNFNVSHHGDYVAIASEPLCLVGLD 119 (271)
Q Consensus 95 ~~fniSHs~~~v~~a~s~~~~vGID 119 (271)
-+|.+--.|.+|.||++. .+|-+|
T Consensus 20 gdf~vv~~GsfV~CAVtg-k~IPld 43 (77)
T COG3908 20 GDFQVVSPGSFVLCAVTG-KPIPLD 43 (77)
T ss_pred CceEEEcCCcEEEEEecC-CcccHH
Confidence 378888889999999984 666544
No 38
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=25.55 E-value=33 Score=20.67 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=16.0
Q ss_pred eheecceeeccCCCC-----Chhhhhhhhh
Q 024179 243 MYRIAGICCKRSPKV-----SHRELQENIT 267 (271)
Q Consensus 243 ~~~~~~~~~~~~~~~-----~~~~~~~~~~ 267 (271)
|+-+.++|+++.-|| .+++|-+|..
T Consensus 1 MG~~~s~Ckrr~n~l~Dv~G~~Inl~~dFe 30 (32)
T PF10813_consen 1 MGSLLSMCKRRHNPLKDVKGNPINLYKDFE 30 (32)
T ss_pred CcceeeeeeccCCcccccCCCEEechhccc
Confidence 445677888888887 3455555543
No 39
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=25.38 E-value=49 Score=21.17 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=14.0
Q ss_pred ccCeEEEEecCCccccccccccc
Q 024179 102 HGDYVAIASEPLCLVGLDIVSCT 124 (271)
Q Consensus 102 s~~~v~~a~s~~~~vGIDIE~~~ 124 (271)
-|.+|.||++. .+| .++.++
T Consensus 4 pG~~V~CAVTg-~~I--pLd~Lr 23 (42)
T PF09866_consen 4 PGSFVRCAVTG-QPI--PLDELR 23 (42)
T ss_pred CCCEEEEEeeC-Ccc--cHHHhc
Confidence 48899999985 444 555553
No 40
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=21.92 E-value=71 Score=22.76 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=29.5
Q ss_pred ccccccccCcccCChhhHHHHHhccCCHHHHHH--HHhc-CCchHHHHHHHHHHHHHHH
Q 024179 117 GLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDN--ILNA-GTSDEILIEFYRYWCLKEA 172 (271)
Q Consensus 117 GIDIE~~~~~~~~~~~~~~~~~~~~fs~~E~~~--l~~~-~~~~~~~~~f~~~Wt~KEA 172 (271)
||||-++-..+-- ..|.++.+...+..|++- ..+. ....++.-+-++.||++.+
T Consensus 2 gvdilklvaaqvg--sqwid~y~sla~aterevaafsngytadherayaalqhwtird~ 58 (84)
T cd08778 2 GIDILKLVAAQVG--SQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGP 58 (84)
T ss_pred cchHHHHHHHHHh--hHHHHHHHHHhhhhHHHHHHHcCCCcccHHHHHHHHHhhhccCh
Confidence 7888765432211 235555555555555543 3221 1234566778899998743
No 41
>PF06816 NOD: NOTCH protein; InterPro: IPR010660 NOTCH signalling plays a fundamental role during a great number of developmental processes in multicellular animals []. NOD (NOTCH protein domain) represents a region present in many NOTCH proteins and NOTCH homologues in multiple species such as 0, NOTCH2 and NOTCH3, LIN12, SC1 and TAN1. Role of NOD domain remains to be elucidated.; GO: 0030154 cell differentiation, 0016021 integral to membrane; PDB: 2OO4_A 3ETO_A 3I08_A 3L95_X.
Probab=20.37 E-value=1.4e+02 Score=20.33 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCCCCceeEccCCCCCcEEec
Q 024179 55 LQYALVHQVLGIPFEEITINRTIEGKPYLES 85 (271)
Q Consensus 55 llr~~l~~~~g~~~~~i~~~~~~~GKP~l~~ 85 (271)
.||. ++..+. ..+.|.+++.|+|.+-.
T Consensus 27 FLr~-Ls~~Lr---t~V~ikkD~~G~~mI~p 53 (57)
T PF06816_consen 27 FLRE-LSRVLR---TTVRIKKDENGNPMIYP 53 (57)
T ss_dssp HHHH-HHHHCT---SEEEE-B-TTS-B-EEE
T ss_pred HHHH-HHHHHe---eeEEEEECCCCCEEEEe
Confidence 3444 344444 46899999999998853
Done!