Query 024180
Match_columns 271
No_of_seqs 223 out of 1230
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 4.2E-84 9.2E-89 609.8 24.0 269 1-270 1-284 (347)
2 PLN03019 carbonic anhydrase 100.0 1.5E-57 3.4E-62 427.5 20.6 206 63-268 70-277 (330)
3 PLN00416 carbonate dehydratase 100.0 1.9E-51 4.1E-56 376.8 20.1 204 66-270 1-205 (258)
4 PLN03006 carbonate dehydratase 100.0 1E-48 2.3E-53 364.7 17.3 185 84-270 49-235 (301)
5 KOG1578 Predicted carbonic anh 100.0 6.1E-43 1.3E-47 320.4 8.8 216 43-270 2-217 (276)
6 PLN02154 carbonic anhydrase 100.0 2.6E-40 5.7E-45 307.0 17.0 161 109-270 70-230 (290)
7 cd00884 beta_CA_cladeB Carboni 100.0 1.5E-40 3.3E-45 292.4 14.2 149 121-270 1-150 (190)
8 PRK10437 carbonic anhydrase; P 100.0 5.1E-40 1.1E-44 295.4 16.3 148 114-270 3-150 (220)
9 PRK15219 carbonic anhydrase; P 100.0 8.1E-40 1.7E-44 298.1 16.5 150 108-270 50-203 (245)
10 cd00883 beta_CA_cladeA Carboni 100.0 8E-40 1.7E-44 285.3 13.9 140 122-270 1-141 (182)
11 COG0288 CynT Carbonic anhydras 100.0 1.2E-39 2.5E-44 290.5 13.1 136 113-255 2-138 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 2.1E-34 4.6E-39 246.6 11.6 105 111-222 1-108 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 9.5E-31 2.1E-35 219.1 11.2 95 148-250 1-95 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 4.8E-29 1E-33 204.3 8.3 76 144-223 1-76 (119)
15 cd03379 beta_CA_cladeD Carboni 99.9 2.9E-27 6.3E-32 198.7 6.5 74 144-224 1-74 (142)
16 KOG1578 Predicted carbonic anh 98.4 1.5E-08 3.3E-13 94.1 -4.6 122 118-244 3-152 (276)
17 PF00561 Abhydrolase_1: alpha/ 58.3 11 0.00023 31.2 3.1 31 190-221 28-58 (230)
18 PF12778 PXPV: PXPV repeat (3 53.9 6.8 0.00015 23.8 0.9 18 41-58 4-21 (22)
19 PRK11440 putative hydrolase; P 38.2 67 0.0014 27.6 5.0 47 164-220 90-136 (188)
20 TIGR01838 PHA_synth_I poly(R)- 36.7 3.6E+02 0.0078 27.9 10.7 166 48-220 45-276 (532)
21 PF04019 DUF359: Protein of un 36.2 2.4E+02 0.0051 23.6 7.7 80 140-227 6-85 (121)
22 PF07859 Abhydrolase_3: alpha/ 35.4 32 0.00069 29.0 2.5 33 191-223 51-88 (211)
23 PRK14066 exodeoxyribonuclease 35.2 74 0.0016 24.5 4.2 28 66-93 1-30 (75)
24 PF00009 GTP_EFTU: Elongation 32.3 24 0.00053 29.9 1.3 16 205-220 3-18 (188)
25 TIGR01250 pro_imino_pep_2 prol 31.0 61 0.0013 27.4 3.5 32 192-223 82-113 (288)
26 TIGR03413 GSH_gloB hydroxyacyl 29.3 86 0.0019 28.4 4.4 23 191-214 143-165 (248)
27 TIGR03100 hydr1_PEP hydrolase, 29.3 59 0.0013 29.4 3.3 32 191-223 84-116 (274)
28 cd01891 TypA_BipA TypA (tyrosi 29.0 34 0.00073 29.0 1.6 16 205-220 2-17 (194)
29 PF00857 Isochorismatase: Isoc 28.2 1.7E+02 0.0037 24.1 5.8 45 168-222 85-129 (174)
30 PF12697 Abhydrolase_6: Alpha/ 27.8 68 0.0015 25.6 3.2 32 192-223 52-83 (228)
31 TIGR02742 TrbC_Ftype type-F co 27.2 1.3E+02 0.0028 25.4 4.8 56 130-204 57-112 (130)
32 PRK03592 haloalkane dehalogena 27.1 68 0.0015 28.6 3.3 31 193-223 80-110 (295)
33 KOG0025 Zn2+-binding dehydroge 25.6 88 0.0019 30.7 3.9 42 161-213 153-194 (354)
34 PF01764 Lipase_3: Lipase (cla 25.2 94 0.002 24.5 3.5 32 192-223 50-81 (140)
35 PLN02824 hydrolase, alpha/beta 24.8 78 0.0017 28.2 3.2 30 194-223 90-119 (294)
36 cd01890 LepA LepA subfamily. 24.6 39 0.00084 27.6 1.2 15 206-220 1-15 (179)
37 COG1116 TauB ABC-type nitrate/ 24.4 43 0.00094 31.4 1.5 16 206-221 30-45 (248)
38 cd01015 CSHase N-carbamoylsarc 24.1 1.6E+02 0.0036 24.9 5.0 50 165-224 84-134 (179)
39 PRK14068 exodeoxyribonuclease 23.5 1.5E+02 0.0033 22.8 4.2 25 68-92 5-31 (76)
40 PRK10566 esterase; Provisional 23.3 95 0.0021 26.8 3.4 28 194-222 93-122 (249)
41 PRK14064 exodeoxyribonuclease 23.1 1.6E+02 0.0035 22.6 4.2 22 69-90 6-29 (75)
42 PF01368 DHH: DHH family; Int 22.8 67 0.0015 25.6 2.2 20 204-223 4-25 (145)
43 PRK11181 23S rRNA (guanosine-2 22.6 3.8E+02 0.0082 24.4 7.3 75 133-217 54-133 (244)
44 cd04160 Arfrp1 Arfrp1 subfamil 22.5 44 0.00095 26.9 1.1 15 207-221 1-15 (167)
45 cd01013 isochorismatase Isocho 22.1 1.8E+02 0.0039 25.4 5.0 50 165-224 112-162 (203)
46 PF02093 Gag_p30: Gag P30 core 21.5 55 0.0012 30.1 1.6 68 52-128 84-157 (211)
47 PF13512 TPR_18: Tetratricopep 21.4 1.9E+02 0.0042 24.9 4.8 42 64-105 19-60 (142)
48 PRK10803 tol-pal system protei 21.0 1.1E+02 0.0025 28.3 3.6 50 50-105 23-72 (263)
49 cd01878 HflX HflX subfamily. 20.9 62 0.0013 27.4 1.7 17 204-220 40-56 (204)
50 cd04167 Snu114p Snu114p subfam 20.6 53 0.0011 28.5 1.3 15 206-220 1-15 (213)
51 cd00954 NAL N-Acetylneuraminic 20.1 1.2E+02 0.0025 28.1 3.5 38 180-217 8-48 (288)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=4.2e-84 Score=609.85 Aligned_cols=269 Identities=75% Similarity=1.156 Sum_probs=249.2
Q ss_pred CCcccccceeccccccccccccccCCCCc-eeEEecc------------CCCCCCCcccCCccccCCCCccccchhhhhh
Q 024180 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (271)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (271)
|||++|||||+||++++++++++ .++|| ++||+|+ ++++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 8999996 1133899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCCchhHHHHhhHHHHHhhcCC--CCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 024180 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (271)
Q Consensus 68 ~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~--~~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (271)
++||||||++|+|||++|++|..+|++||+++|+||++. ....+++++++|++||++|+++.+..++++|++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 999999999999999999999999999999999999862 235689999999999999999999999999999999999
Q ss_pred CcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHhhhc
Q 024180 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (271)
Q Consensus 146 P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~ 225 (271)
|+++||+|+||||+|+.|||++|||+||+||+||+|+++|...|+++.++|||||.+|+|++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999886666789999999999999999999999999999999986
Q ss_pred ccCCCCCcccHHHHHHhchhhHHHHhhhcCCCChHHHHHHHHHhc
Q 024180 226 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKVI 270 (271)
Q Consensus 226 ~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~~~~~~~~~~~~~ekea 270 (271)
..++....++|+.||+.+.|++++++.++++.++.++|..||+++
T Consensus 240 ~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeN 284 (347)
T PLN03014 240 PLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREA 284 (347)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence 555555678999999999999999888888888999999998875
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.5e-57 Score=427.54 Aligned_cols=206 Identities=78% Similarity=1.238 Sum_probs=189.7
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCchhHHHHhhHHHHHhhcCC--CCCChHHHHHHHHHHHHHHHhhhccCChhhHHhh
Q 024180 63 REDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSEL 140 (271)
Q Consensus 63 ~~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~--~~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~L 140 (271)
.++|+++|||+||++|+|||++|++|..+|++||+++|+||++. ..+++++++++|++||++|+.+.+..++++|++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~L 149 (330)
T PLN03019 70 LRRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGEL 149 (330)
T ss_pred hHHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhh
Confidence 35699999999999999999999999999999999999999973 3467899999999999999999998999999999
Q ss_pred hcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHH
Q 024180 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (271)
Q Consensus 141 a~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~ 220 (271)
++||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...|+++.++|||||.+|||++|||||||+||||+
T Consensus 150 a~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVk 229 (330)
T PLN03019 150 AKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIK 229 (330)
T ss_pred ccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHH
Confidence 99999999999999999999999999999999999999999998876678899999999999999999999999999999
Q ss_pred HhhhcccCCCCCcccHHHHHHhchhhHHHHhhhcCCCChHHHHHHHHH
Q 024180 221 GLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK 268 (271)
Q Consensus 221 Aal~~~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~~~~~~~~~~~~~ek 268 (271)
|+++...++....++|+.||+.+.|++.++....+..+++++|+.||+
T Consensus 230 Aal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~ 277 (330)
T PLN03019 230 GLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER 277 (330)
T ss_pred HHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 999865555556789999999999999998777777788888888887
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=1.9e-51 Score=376.80 Aligned_cols=204 Identities=61% Similarity=1.021 Sum_probs=183.0
Q ss_pred hhhhhHHHHHHHHHHHhhhcCCchhHHHHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 024180 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (271)
Q Consensus 66 ~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~~~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (271)
|+.+||+.+|.+|.+||+.+..+..++++++.-++++|+... .+|.+++++|++||+||+++++..++++|+.|+.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 788999999999999999999999999999999999999853 6799999999999999999998888999999999999
Q ss_pred CcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHhhhc
Q 024180 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (271)
Q Consensus 146 P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~ 225 (271)
|+++||+||||||+|+.|||.+|||+||+||+||+|+++|...++++.++||||+.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876555678899999999999999999999999999999874
Q ss_pred ccC-CCCCcccHHHHHHhchhhHHHHhhhcCCCChHHHHHHHHHhc
Q 024180 226 TFD-GNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKVI 270 (271)
Q Consensus 226 ~~~-g~~~~~~I~~Wl~~~~pA~~~~~~~~~~~~~~~~~~~~ekea 270 (271)
.+. .....++|..|+..+.|+++++.......++.+++..||+++
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~n 205 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEA 205 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 322 122346899999999999988776666667777777788764
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1e-48 Score=364.70 Aligned_cols=185 Identities=42% Similarity=0.759 Sum_probs=166.0
Q ss_pred hcCCchhHHHHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcc
Q 024180 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (271)
Q Consensus 84 ~~~~l~~~a~~~i~~~t~el~~~~--~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe 161 (271)
+..+|..+|++|++++|+||++.+ ...+.+++++|++||.+|+..++..++++|++|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456888999999999999999643 345899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHhhhcccCCCCCcccHHHHHH
Q 024180 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 241 (271)
Q Consensus 162 ~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~~~~g~~~~~~I~~Wl~ 241 (271)
.|||++|||+||+||+||+|+|++... +++.++|||||.+|+|++|||||||+||||+|+++..+.+ ...++|+.|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHH
Confidence 999999999999999999999987532 5788999999999999999999999999999999865554 35679999999
Q ss_pred hchhhHHHHhhhcCCCChHHHHHHHHHhc
Q 024180 242 IGIPAKSKVLTEHGDKPFGDQCTYCEKVI 270 (271)
Q Consensus 242 ~~~pA~~~~~~~~~~~~~~~~~~~~ekea 270 (271)
.+.+++.++.+...+..++++|..||+++
T Consensus 207 ~~~~a~~~v~~~~~~~~~~~~~~~~ekeN 235 (301)
T PLN03006 207 VGKKAKESTKAVASNLHFDHQCQHCEKAS 235 (301)
T ss_pred HHHHHHHHHhhhhcccCHHHHHHHHHHHH
Confidence 99999988876656667888999999875
No 5
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-43 Score=320.42 Aligned_cols=216 Identities=44% Similarity=0.671 Sum_probs=205.7
Q ss_pred CcccCCccccCCCCccccchhhhhhhhhHHHHHHHHHHHhhhcCCchhHHHHhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 024180 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (271)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~~~~~~~~~le~Ll~GN 122 (271)
.|+|+.+.|..+.+.....+.++|.+.+|+.+++...++|..+-++ ++++++.+++++ ++.++++++||
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999999999999999999999999999999998 899999999983 58899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHh
Q 024180 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (271)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~ 202 (271)
..|..+++.++|.+|..++++|+|+.++|+|+||||+|++|++++|||.|++||++|+|+|+|..++.++.++|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred cCCcEEEEeccCCchhHHHhhhcccCCCCCcccHHHHHHhchhhHHHHhhhcCCCChHHHHHHHHHhc
Q 024180 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKVI 270 (271)
Q Consensus 203 L~Vk~IVV~GHS~CGai~Aal~~~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~~~~~~~~~~~~~ekea 270 (271)
|+|++|+||||++||||+++|....++. ..+|+..|+.+..+++..++++.....+++||..||+++
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a 217 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEA 217 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHH
Confidence 9999999999999999999998877665 678999999999999999999999999999999999986
No 6
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=2.6e-40 Score=306.97 Aligned_cols=161 Identities=43% Similarity=0.761 Sum_probs=139.7
Q ss_pred CChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCcc
Q 024180 109 TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTK 188 (271)
Q Consensus 109 ~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~ 188 (271)
.+..+.+++|++||++|++.++..+++.|+.|+.||+|+++||+|+||||+|+.|||.+|||+||+||+||+|++++. +
T Consensus 70 ~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~-g 148 (290)
T PLN02154 70 ETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQN-G 148 (290)
T ss_pred chhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccC-C
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999999764 3
Q ss_pred chhhHHHHHHHHHhcCCcEEEEeccCCchhHHHhhhcccCCCCCcccHHHHHHhchhhHHHHhhhcCCCChHHHHHHHHH
Q 024180 189 YAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK 268 (271)
Q Consensus 189 ~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~~~~~~~~~~~~~ek 268 (271)
++++.++|||||.+|+|++|||||||+||||+|+++.........++++.|+..+.+++.+.....++.+++++++.||+
T Consensus 149 ~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~ 228 (290)
T PLN02154 149 PTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEK 228 (290)
T ss_pred ccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 35789999999999999999999999999999999743222344579999999988887766544455567788888887
Q ss_pred hc
Q 024180 269 VI 270 (271)
Q Consensus 269 ea 270 (271)
++
T Consensus 229 ~N 230 (290)
T PLN02154 229 ES 230 (290)
T ss_pred HH
Confidence 75
No 7
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.5e-40 Score=292.41 Aligned_cols=149 Identities=49% Similarity=0.788 Sum_probs=129.1
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCc-cchhhHHHHHHH
Q 024180 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (271)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~-~~~~v~asLEyA 199 (271)
||++|++..+..++++|++|++||+|+++||+||||||+|+.|||.+|||+||+||+||+|++++.+ .++++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999988889999999999999999999999999999999999999999999999999987542 346789999999
Q ss_pred HHhcCCcEEEEeccCCchhHHHhhhcccCCCCCcccHHHHHHhchhhHHHHhhhcCCCChHHHHHHHHHhc
Q 024180 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKVI 270 (271)
Q Consensus 200 V~~L~Vk~IVV~GHS~CGai~Aal~~~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~~~~~~~~~~~~~ekea 270 (271)
+.+|+|++|||||||+||||+|++.... +....++|..||..+.+++..........+..++..++++++
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~N 150 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKEN 150 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999997533 233456899999999999998876655555666666666653
No 8
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=5.1e-40 Score=295.41 Aligned_cols=148 Identities=28% Similarity=0.467 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhH
Q 024180 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (271)
Q Consensus 114 ~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~ 193 (271)
.+++|++||++|++..+..++++|+.++++|+|+++|||||||||+|+.|||.+|||+||+||+||+|++.+. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 5889999999999998888999999999999999999999999999999999999999999999999998753 478
Q ss_pred HHHHHHHHhcCCcEEEEeccCCchhHHHhhhcccCCCCCcccHHHHHHhchhhHHHHhhhcCCCChHHHHHHHHHhc
Q 024180 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKVI 270 (271)
Q Consensus 194 asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~~~~~~~~~~~~~ekea 270 (271)
++|||||.+|+|++|||||||+||+|+|+++.. ..++|+.||..+.+++++......+.+..+++.++++++
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~N 150 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELN 150 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 999999999999999999999999999999632 247899999999999987665555556666676666653
No 9
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=8.1e-40 Score=298.14 Aligned_cols=150 Identities=22% Similarity=0.282 Sum_probs=124.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCC
Q 024180 108 DTKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (271)
Q Consensus 108 ~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~---~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~ 184 (271)
..+|.+++++|++||+||+++.+. .++++ .++++||+|+++||+||||||+||.|||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 478999999999999999998865 44433 2457899999999999999999999999999999999999999975
Q ss_pred CCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHhhhcccCCCCCcccHHHHHHhchhhHHHHhhhc-CCCChHHHH
Q 024180 185 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQC 263 (271)
Q Consensus 185 d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~-~~~~~~~~~ 263 (271)
++.++||||+.+|+|++|||||||+||||+|+++.. ..++|..||+.+.|++++..... ...+.++.+
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~-----~~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~ 196 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNV-----ELGNLTGLLDRIKPAIEVTEFDGERSSKNYKFV 196 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcC-----CcchHHHHHHHHHHHHHHHhhcccccCCHHHHH
Confidence 267899999999999999999999999999999642 34689999999999998764321 122334555
Q ss_pred HHHHHhc
Q 024180 264 TYCEKVI 270 (271)
Q Consensus 264 ~~~ekea 270 (271)
..+++++
T Consensus 197 ~~~~~~N 203 (245)
T PRK15219 197 DAVARKN 203 (245)
T ss_pred HHHHHHH
Confidence 5665543
No 10
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=8e-40 Score=285.28 Aligned_cols=140 Identities=33% Similarity=0.541 Sum_probs=120.2
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHH
Q 024180 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (271)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~ 201 (271)
|++|++..+...|++|++++.+|+|+++|||||||||+|+.|||.+|||+||+||+||+|++++. ++.++|||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998753 57899999999
Q ss_pred hcCCcEEEEeccCCchhHHHhhhcccCCCCCcccHHHHHHhchhhHHHHhhhcC-CCChHHHHHHHHHhc
Q 024180 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHG-DKPFGDQCTYCEKVI 270 (271)
Q Consensus 202 ~L~Vk~IVV~GHS~CGai~Aal~~~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~~-~~~~~~~~~~~ekea 270 (271)
+|||++|||||||+||||+|+++.. ..+++..|+..+.++++....... ..+.+++...+++++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 141 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELN 141 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 9999999999999999999998642 346899999999998876543322 224455566666653
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=290.51 Aligned_cols=136 Identities=36% Similarity=0.591 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchh
Q 024180 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (271)
Q Consensus 113 ~~le~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~ 191 (271)
..+++|++||++|.++.+..++.+|..|. .+|+|+++|||||||||+||.+||.+|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888899998876 56999999999999999999999999999999999999999875 36
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCchhHHHhhhcccCCCCCcccHHHHHHhchhhHHHHhhhcC
Q 024180 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHG 255 (271)
Q Consensus 192 v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~~~~g~~~~~~I~~Wl~~~~pA~~~~~~~~~ 255 (271)
+++|||||+.+|||++|||||||+|||++|+++....+.+ ++..|+.++.+.........+
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~ 138 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLG 138 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchh
Confidence 8999999999999999999999999999999976554433 699999988888776655443
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.1e-34 Score=246.61 Aligned_cols=105 Identities=42% Similarity=0.603 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCc
Q 024180 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (271)
Q Consensus 111 ~~~~le~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~ 187 (271)
|.+++++|++||++|++++... .++.|.+++++|+|+++|||||||||+|+.+||.+|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5678999999999999875431 255688899999999999999999999999999999999999999999986
Q ss_pred cchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHh
Q 024180 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (271)
Q Consensus 188 ~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aa 222 (271)
+++++||||+.+|||++|||||||+||+++++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~ 108 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA 108 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH
Confidence 36799999999999999999999999999997
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.97 E-value=9.5e-31 Score=219.15 Aligned_cols=95 Identities=42% Similarity=0.763 Sum_probs=79.7
Q ss_pred EEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHhhhccc
Q 024180 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (271)
Q Consensus 148 ~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~~~ 227 (271)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .+++++||||+.+||+++|||||||+||++++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 58999999999999999999999999999999998864 46889999999999999999999999999999886322
Q ss_pred CCCCCcccHHHHHHhchhhHHHH
Q 024180 228 DGNNSTDFIEDWVKIGIPAKSKV 250 (271)
Q Consensus 228 ~g~~~~~~I~~Wl~~~~pA~~~~ 250 (271)
..++++.|++.+.++....
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~ 95 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEEC 95 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHT
T ss_pred ----ccchHHHHHHhhhhhHHHH
Confidence 4568999999999998883
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.96 E-value=4.8e-29 Score=204.27 Aligned_cols=76 Identities=51% Similarity=0.921 Sum_probs=71.5
Q ss_pred CCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHhh
Q 024180 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 144 Q~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal 223 (271)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.+ .+++++||||+..||+++|+|||||+||++++..
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a~~ 76 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKALV 76 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHHHH
Confidence 789999999999999999999999999999999999999764 4688999999999999999999999999999843
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.94 E-value=2.9e-27 Score=198.72 Aligned_cols=74 Identities=27% Similarity=0.424 Sum_probs=69.5
Q ss_pred CCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHhh
Q 024180 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 144 Q~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal 223 (271)
+.++++|||||||||+|+.+||.+|||+||+||+||+|++ +++++|+||+.+||+++|+|||||+||+++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3578999999999999999999999999999999999986 367899999999999999999999999999986
Q ss_pred h
Q 024180 224 S 224 (271)
Q Consensus 224 ~ 224 (271)
+
T Consensus 74 ~ 74 (142)
T cd03379 74 E 74 (142)
T ss_pred H
Confidence 5
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.36 E-value=1.5e-08 Score=94.14 Aligned_cols=122 Identities=27% Similarity=0.396 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccc----------------cCCCCCceEEEeccCCCC
Q 024180 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (271)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~I----------------fg~~pGDlFVvRNaGN~V 181 (271)
|+.|..+|+..... ++-+++.+-++|.+..++|+|+|.-|... +..+.||.||+||.||..
T Consensus 3 i~~~~~~~~~t~~~---~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRK---DLVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHH---HhHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 66777888876542 22366777889999999999999999877 677899999999999999
Q ss_pred CCCCCccchhhH-------HHHHHHHHhcCCcEEEEeccCCchhHHHhhhcccCC--C---CCcccHHHHHHhch
Q 024180 182 PPYDQTKYAGVG-------AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDG--N---NSTDFIEDWVKIGI 244 (271)
Q Consensus 182 ~p~d~~~~~~v~-------asLEyAV~~L~Vk~IVV~GHS~CGai~Aal~~~~~g--~---~~~~~I~~Wl~~~~ 244 (271)
+.-. .|.... .+|+.|.......||+||||++|-+++......... . .....++.||....
T Consensus 80 ~~p~--~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lk 152 (276)
T KOG1578|consen 80 PNPT--LFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLK 152 (276)
T ss_pred CChh--hhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhc
Confidence 8532 111111 356777777888999999999999999887654411 2 22357999997543
No 17
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=58.31 E-value=11 Score=31.22 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHhcCCcEEEEeccCCchhHHH
Q 024180 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (271)
Q Consensus 190 ~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~A 221 (271)
..+.+.+++-...+|++.|.++|||- ||.-+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 45677899999999999999999998 55444
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=53.87 E-value=6.8 Score=23.80 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=14.1
Q ss_pred CCCcccCCccccCCCCcc
Q 024180 41 PPSLIRNEPVFAAPAPII 58 (271)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (271)
.|..++-+||+.||.|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 577778888888888864
No 19
>PRK11440 putative hydrolase; Provisional
Probab=38.15 E-value=67 Score=27.55 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=31.4
Q ss_pred cCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHH
Q 024180 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (271)
Q Consensus 164 fg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~ 220 (271)
+...+||.++.++--+-... + -|+.-+...|+++|||+|=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 45678898877765443322 1 25556678999999999965544444
No 20
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=36.72 E-value=3.6e+02 Score=27.85 Aligned_cols=166 Identities=22% Similarity=0.295 Sum_probs=95.6
Q ss_pred CccccCCCCccccchhhhhhhhhHHHHHHHHHHHhhhcCCchhHHHHhhHHHHHhhcCCCCC------ChHHHH------
Q 024180 48 EPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDT------KAFDSV------ 115 (271)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~~~~------~~~~~l------ 115 (271)
..-|++|+===+|. -++..++|--.-+-+..++.+-.++......++...++++-..-++ .| +++
T Consensus 45 d~RF~~~~W~~~~~--~~~~~q~yl~~~~~~~~~~~~~~g~~~~~~~~~~f~~~q~~~a~sPsNf~~tNP-~~~~~~~~t 121 (532)
T TIGR01838 45 DRRFASPAWSSHPF--FDFLKQSYLLNSSWLLELVDAVEGLDPKTRRRLEFFTRQLINAMAPSNFLATNP-EALRLTVET 121 (532)
T ss_pred CCCCCCchhccChH--HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhCCcccccCCH-HHHHHHHHc
Confidence 45677543221221 3566788887777888888888889988888998888887553222 23 233
Q ss_pred --HHHHHHHHHHHhhhc---------cCChhhHH-------------------------hhh-c-CCCCcEEEEeccCCC
Q 024180 116 --ERIKEGFIHFKREKY---------EKNPALYS-------------------------ELA-K-GQSPKYMVFACSDSR 157 (271)
Q Consensus 116 --e~Ll~GN~rF~~~~~---------~~~p~~~~-------------------------~La-~-gQ~P~~lVItCsDSR 157 (271)
+.|++|-+.|.+... ..+.+-|+ ... + ...|-.+|-.|
T Consensus 122 ~g~~l~~G~~~~~~D~~~~~~~~~i~~~~~~~f~vg~~~a~Tpg~VV~~~~~~eLi~Y~P~t~~~~~~PlLiVp~~---- 197 (532)
T TIGR01838 122 QGESLVRGMENLAEDLERGGGDLKIRQTDSSAFEVGRNLATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPW---- 197 (532)
T ss_pred CChhHHHHHHHHHHHHHhcCCCCCCCCCCccceeeCCCCCCCCCeEEEECCcEEEEEeCCCCCcCCCCcEEEECcc----
Confidence 457778777776321 11222221 110 0 12343344343
Q ss_pred CCcccccCCCCCc------------eEEE--eccCCCCCCCCCccc--hhhHHHHHHHHHhcCCcEEEEeccCCchhHH
Q 024180 158 VCPSHVLDFQPGE------------AFVV--RNVANIVPPYDQTKY--AGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (271)
Q Consensus 158 V~Pe~Ifg~~pGD------------lFVv--RNaGN~V~p~d~~~~--~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~ 220 (271)
+.-.-|||+.||. +|++ ||.|---.+.....| .++.++|++....+|.+.|.++||+-=|.+.
T Consensus 198 i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~ 276 (532)
T TIGR01838 198 INKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLL 276 (532)
T ss_pred cccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcHHH
Confidence 2334677766553 3333 555432111111122 3567788888888999999999998766653
No 21
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=36.18 E-value=2.4e+02 Score=23.58 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=64.9
Q ss_pred hhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhH
Q 024180 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (271)
Q Consensus 140 La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai 219 (271)
+..|-.|...||-.=--|-....... .....+.++|..+-+.. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45788999999999888888765555 55678999999999876 36678999987777778999999999999
Q ss_pred HHhhhccc
Q 024180 220 KGLMSFTF 227 (271)
Q Consensus 220 ~Aal~~~~ 227 (271)
-+.+-.+.
T Consensus 78 Pail~aP~ 85 (121)
T PF04019_consen 78 PAILYAPE 85 (121)
T ss_pred HHHHhCCC
Confidence 88776544
No 22
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=35.41 E-value=32 Score=29.00 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHh-----cCCcEEEEeccCCchhHHHhh
Q 024180 191 GVGAAVEYAVLH-----LKVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 191 ~v~asLEyAV~~-----L~Vk~IVV~GHS~CGai~Aal 223 (271)
++.+++++...+ ...+.|+|+|||.-|.+.+.+
T Consensus 51 D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~ 88 (211)
T PF07859_consen 51 DVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSL 88 (211)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHH
T ss_pred ccccceeeeccccccccccccceEEeecccccchhhhh
Confidence 567889998888 677899999999988887654
No 23
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=35.20 E-value=74 Score=24.50 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHHHHHHhh--hcCCchhHHH
Q 024180 66 MANQSYEEAIEALKKLLK--EKEDLKPVAA 93 (271)
Q Consensus 66 ~~~~s~~~ai~~~~~~l~--~~~~l~~~a~ 93 (271)
|...+|++|++.|...++ +++++....+
T Consensus 1 m~~~~fEeal~~LE~IV~~LE~g~l~Lees 30 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKLEGGELSLDDS 30 (75)
T ss_pred CccccHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 566789999999988776 5666654443
No 24
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=32.30 E-value=24 Score=29.90 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=13.8
Q ss_pred CcEEEEeccCCchhHH
Q 024180 205 VSNIVVIGHSACGGIK 220 (271)
Q Consensus 205 Vk~IVV~GHS~CGai~ 220 (271)
+.+|.|+||.+||=..
T Consensus 3 ~~~I~i~G~~~sGKTT 18 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTT 18 (188)
T ss_dssp EEEEEEEESTTSSHHH
T ss_pred EEEEEEECCCCCCcEe
Confidence 5689999999999665
No 25
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=30.97 E-value=61 Score=27.36 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCchhHHHhh
Q 024180 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 192 v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal 223 (271)
....+...+..++.+.++|+|||--|.+...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~ 113 (288)
T TIGR01250 82 FVDELEEVREKLGLDKFYLLGHSWGGMLAQEY 113 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeehHHHHHHHH
Confidence 33445555678899999999999999887654
No 26
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=29.33 E-value=86 Score=28.37 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhcCCcEEEEeccC
Q 024180 191 GVGAAVEYAVLHLKVSNIVVIGHS 214 (271)
Q Consensus 191 ~v~asLEyAV~~L~Vk~IVV~GHS 214 (271)
....+|+ .+..|..+.+|++||.
T Consensus 143 ~~~~Sl~-~l~~l~~~~~i~pGH~ 165 (248)
T TIGR03413 143 QMYDSLQ-RLAALPDDTLVYCAHE 165 (248)
T ss_pred HHHHHHH-HHHcCCCCeEEECCCC
Confidence 4566787 5777888888999995
No 27
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=29.28 E-value=59 Score=29.38 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhc-CCcEEEEeccCCchhHHHhh
Q 024180 191 GVGAAVEYAVLHL-KVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 191 ~v~asLEyAV~~L-~Vk~IVV~GHS~CGai~Aal 223 (271)
++.+++++....+ +.+.|+++|||- ||.-+++
T Consensus 84 d~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~~ 116 (274)
T TIGR03100 84 DIAAAIDAFREAAPHLRRIVAWGLCD-AASAALL 116 (274)
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECH-HHHHHHH
Confidence 4556666544443 678899999998 5555543
No 28
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=28.95 E-value=34 Score=29.04 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.5
Q ss_pred CcEEEEeccCCchhHH
Q 024180 205 VSNIVVIGHSACGGIK 220 (271)
Q Consensus 205 Vk~IVV~GHS~CGai~ 220 (271)
+++|+++||++||=..
T Consensus 2 ~r~i~ivG~~~~GKTs 17 (194)
T cd01891 2 IRNIAIIAHVDHGKTT 17 (194)
T ss_pred ccEEEEEecCCCCHHH
Confidence 6799999999999543
No 29
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=28.24 E-value=1.7e+02 Score=24.07 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhHHHh
Q 024180 168 PGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (271)
Q Consensus 168 pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aa 222 (271)
+||..+.|+--|..... .|+.-+...|+++|+|+|-.-.+-|.+.
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~T 129 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLAT 129 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEehh
Confidence 39999999866665332 2555677899999999998777777654
No 30
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=27.76 E-value=68 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCchhHHHhh
Q 024180 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 192 v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal 223 (271)
....+...+..++.+.++|+|||-=|.+...+
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccc
Confidence 34566778889999999999999877666433
No 31
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=27.23 E-value=1.3e+02 Score=25.44 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=34.9
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcC
Q 024180 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (271)
Q Consensus 130 ~~~~p~~~~~La~gQ~P~~lVItCsDSRV~Pe~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~ 204 (271)
..-+|.+|++..-.+-| ++|+.|.+..+..+.. ..+++-.++. ||+ +|+||+..+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v~--Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVVY--GNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEEE--ecc--------------cHHHHHHHHH
Confidence 44588999988777777 6788888875554332 3444443333 443 5777766543
No 32
>PRK03592 haloalkane dehalogenase; Provisional
Probab=27.08 E-value=68 Score=28.58 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCcEEEEeccCCchhHHHhh
Q 024180 193 GAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 193 ~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal 223 (271)
...+.-.+..|+.+.++|+|||--|.+...+
T Consensus 80 a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~ 110 (295)
T PRK03592 80 ARYLDAWFDALGLDDVVLVGHDWGSALGFDW 110 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHH
Confidence 3445556778999999999999999988654
No 33
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=25.57 E-value=88 Score=30.70 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=30.1
Q ss_pred ccccCCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEecc
Q 024180 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGH 213 (271)
Q Consensus 161 e~Ifg~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GH 213 (271)
.++.++++|| .||.|.||-. |..++---...+|++.|=|+-.
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVRd 194 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVRD 194 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEeec
Confidence 4677999999 8999999943 3333333457889988877654
No 34
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=25.24 E-value=94 Score=24.46 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCCcEEEEeccCCchhHHHhh
Q 024180 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 192 v~asLEyAV~~L~Vk~IVV~GHS~CGai~Aal 223 (271)
+...|.-.+...+-..|+|.|||-=|++..++
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~ 81 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASLA 81 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHHH
Confidence 44455555666667899999999988888654
No 35
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=24.75 E-value=78 Score=28.20 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCcEEEEeccCCchhHHHhh
Q 024180 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (271)
Q Consensus 194 asLEyAV~~L~Vk~IVV~GHS~CGai~Aal 223 (271)
..+.-.+..++.+.++++|||--|.+...+
T Consensus 90 ~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~ 119 (294)
T PLN02824 90 EQLNDFCSDVVGDPAFVICNSVGGVVGLQA 119 (294)
T ss_pred HHHHHHHHHhcCCCeEEEEeCHHHHHHHHH
Confidence 344445667889999999999999888543
No 36
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=24.60 E-value=39 Score=27.61 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.3
Q ss_pred cEEEEeccCCchhHH
Q 024180 206 SNIVVIGHSACGGIK 220 (271)
Q Consensus 206 k~IVV~GHS~CGai~ 220 (271)
++|+++||++||=..
T Consensus 1 rni~~vG~~~~GKss 15 (179)
T cd01890 1 RNFSIIAHIDHGKST 15 (179)
T ss_pred CcEEEEeecCCCHHH
Confidence 479999999999544
No 37
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.39 E-value=43 Score=31.45 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=13.4
Q ss_pred cEEEEeccCCchhHHH
Q 024180 206 SNIVVIGHSACGGIKG 221 (271)
Q Consensus 206 k~IVV~GHS~CGai~A 221 (271)
+-|.|+|||+||=-+-
T Consensus 30 EfvsilGpSGcGKSTL 45 (248)
T COG1116 30 EFVAILGPSGCGKSTL 45 (248)
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999997663
No 38
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=24.13 E-value=1.6e+02 Score=24.91 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=30.2
Q ss_pred CCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccC-CchhHHHhhh
Q 024180 165 DFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHS-ACGGIKGLMS 224 (271)
Q Consensus 165 g~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS-~CGai~Aal~ 224 (271)
.-.+||..+.++.=+-.. + ..|+.-+...|+++|||+|=. +|.....+.+
T Consensus 84 ~~~~~~~v~~K~~~saF~--------~--t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~ 134 (179)
T cd01015 84 APQEDEMVLVKKYASAFF--------G--TSLAATLTARGVDTLIVAGCSTSGCIRATAVD 134 (179)
T ss_pred CCCCCCEEEecCccCCcc--------C--CcHHHHHHHcCCCEEEEeeecccHhHHHHHHH
Confidence 446788766665322211 1 247777789999999999964 3333334443
No 39
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.48 E-value=1.5e+02 Score=22.82 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHhh--hcCCchhHH
Q 024180 68 NQSYEEAIEALKKLLK--EKEDLKPVA 92 (271)
Q Consensus 68 ~~s~~~ai~~~~~~l~--~~~~l~~~a 92 (271)
..||+++++.|...+. +++++....
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~Lee 31 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVSLEE 31 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3489999999987776 555555433
No 40
>PRK10566 esterase; Provisional
Probab=23.31 E-value=95 Score=26.75 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=17.2
Q ss_pred HHHHHHHHh--cCCcEEEEeccCCchhHHHh
Q 024180 194 AAVEYAVLH--LKVSNIVVIGHSACGGIKGL 222 (271)
Q Consensus 194 asLEyAV~~--L~Vk~IVV~GHS~CGai~Aa 222 (271)
..+++.... +..+.|+|+|||- ||.-++
T Consensus 93 ~~~~~l~~~~~~~~~~i~v~G~S~-Gg~~al 122 (249)
T PRK10566 93 TLRAAIREEGWLLDDRLAVGGASM-GGMTAL 122 (249)
T ss_pred HHHHHHHhcCCcCccceeEEeecc-cHHHHH
Confidence 344444333 3457899999999 544443
No 41
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.07 E-value=1.6e+02 Score=22.61 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHhh--hcCCchh
Q 024180 69 QSYEEAIEALKKLLK--EKEDLKP 90 (271)
Q Consensus 69 ~s~~~ai~~~~~~l~--~~~~l~~ 90 (271)
.+|+++++.|..++. +++++..
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~L 29 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSASL 29 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCH
Confidence 379999999887776 4555553
No 42
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=22.79 E-value=67 Score=25.55 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=16.9
Q ss_pred CCcEEEEeccC--CchhHHHhh
Q 024180 204 KVSNIVVIGHS--ACGGIKGLM 223 (271)
Q Consensus 204 ~Vk~IVV~GHS--~CGai~Aal 223 (271)
+-+.|+|+||. |+-|+.+++
T Consensus 4 ~~~~i~i~~H~~~D~Dgl~Sa~ 25 (145)
T PF01368_consen 4 EAERILIVGHINPDADGLGSAI 25 (145)
T ss_dssp TTSEEEEEEBSS-SHHHHHHHH
T ss_pred CCCEEEEEccCCCCchHHHHHH
Confidence 45789999999 988888765
No 43
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=22.59 E-value=3.8e+02 Score=24.45 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=40.4
Q ss_pred ChhhHHhhhcCCCCcEEEEeccCCCC----CcccccCCCC-CceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcE
Q 024180 133 NPALYSELAKGQSPKYMVFACSDSRV----CPSHVLDFQP-GEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSN 207 (271)
Q Consensus 133 ~p~~~~~La~gQ~P~~lVItCsDSRV----~Pe~Ifg~~p-GDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~ 207 (271)
..+.++++.+.++|.=++.-|...+. +.+.++.... +-++++= |+-.| ++++ +|-=....+|++.
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd---~v~dp------~NlG-ai~Rta~a~G~~~ 123 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILD---GVTDP------HNLG-ACLRSADAAGVHA 123 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEc---CCCCc------chHH-HHHHHHHHcCCCE
Confidence 45567788877777655555543331 2233333222 2233332 22222 2343 4445666899999
Q ss_pred EEEeccCCch
Q 024180 208 IVVIGHSACG 217 (271)
Q Consensus 208 IVV~GHS~CG 217 (271)
|++.+|+.+.
T Consensus 124 vi~~~~~~~~ 133 (244)
T PRK11181 124 VIVPKDRSAQ 133 (244)
T ss_pred EEECCCCCCC
Confidence 9998887543
No 44
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.47 E-value=44 Score=26.89 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=12.3
Q ss_pred EEEEeccCCchhHHH
Q 024180 207 NIVVIGHSACGGIKG 221 (271)
Q Consensus 207 ~IVV~GHS~CGai~A 221 (271)
.|+|+||.+||=..-
T Consensus 1 ~i~~vG~~~~GKstL 15 (167)
T cd04160 1 SVLILGLDNAGKTTF 15 (167)
T ss_pred CEEEEecCCCCHHHH
Confidence 489999999997653
No 45
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=22.10 E-value=1.8e+02 Score=25.43 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=30.7
Q ss_pred CCCCCceEEEeccCCCCCCCCCccchhhHHHHHHHHHhcCCcEEEEeccCCchhH-HHhhh
Q 024180 165 DFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI-KGLMS 224 (271)
Q Consensus 165 g~~pGDlFVvRNaGN~V~p~d~~~~~~v~asLEyAV~~L~Vk~IVV~GHS~CGai-~Aal~ 224 (271)
...+||.++-++--+-.... -|+.-+..+|+++|||+|=.--.-| ..+++
T Consensus 112 ~~~~~d~vi~K~~~saF~~T----------~L~~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~ 162 (203)
T cd01013 112 APQPDDTVLTKWRYSAFKRS----------PLLERLKESGRDQLIITGVYAHIGCLSTAVD 162 (203)
T ss_pred CCCCCCEEEeCCCcCCcCCC----------CHHHHHHHcCCCEEEEEEeccChhHHHHHHH
Confidence 34578877777544433221 2555577899999999996444433 34443
No 46
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=21.54 E-value=55 Score=30.12 Aligned_cols=68 Identities=25% Similarity=0.449 Sum_probs=32.2
Q ss_pred cCCCCccccchhhhhhhhhHHHHHHHHHHHhhhcCCchhHHHH------hhHHHHHhhcCCCCCChHHHHHHHHHHHHHH
Q 024180 52 AAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAA------KVEQITAQLQTPSDTKAFDSVERIKEGFIHF 125 (271)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~------~i~~~t~el~~~~~~~~~~~le~Ll~GN~rF 125 (271)
..=.|+..|.|.-. +..-.+++..+++.|= .||.. |+. |+.++++ +. ..+|...+++|.+++++|
T Consensus 84 ~~~fP~~~P~WD~N--t~~g~~~L~~yrq~LL--~GLr~-aa~Kp~NlsKv~~v~Q---g~-~EsPs~FLeRL~ea~r~y 154 (211)
T PF02093_consen 84 EEQFPSTDPNWDPN--TAEGREALRLYRQCLL--AGLRG-AARKPTNLSKVREVTQ---GP-NESPSAFLERLREAYRKY 154 (211)
T ss_dssp HHHS-SS-----TT--SHHHHHHHHHHHHHHH--HHHHH-HHHH-----S--TTTT---TG-GGHHHHHHHHHHHHHHHT
T ss_pred HhhCCCCCCCCCCC--cHHHHHHHHHHHHHHH--HHHHh-cCCCCccHHHHHHHHh---CC-CCCHHHHHHHHHHHHHhc
Confidence 34568888988443 3444466665554332 23321 222 2333322 21 246889999999999998
Q ss_pred Hhh
Q 024180 126 KRE 128 (271)
Q Consensus 126 ~~~ 128 (271)
..-
T Consensus 155 Tp~ 157 (211)
T PF02093_consen 155 TPF 157 (211)
T ss_dssp S--
T ss_pred CCC
Confidence 653
No 47
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=21.41 E-value=1.9e+02 Score=24.88 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=27.8
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCchhHHHHhhHHHHHhhcC
Q 024180 64 EDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQT 105 (271)
Q Consensus 64 ~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~ 105 (271)
+.|.+..|++||+.|..|..+=..-.-..-+.++-+-+..+.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~ 60 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ 60 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc
Confidence 457788899999999888875543333334455555555555
No 48
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.02 E-value=1.1e+02 Score=28.29 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=34.2
Q ss_pred cccCCCCccccchhhhhhhhhHHHHHHHHHHHhhhcCCchhHHHHhhHHHHHhhcC
Q 024180 50 VFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQT 105 (271)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~ 105 (271)
+++||+|+ .|....|.++-++.|.+.+...+.....-...|+.+.+|+..
T Consensus 23 ~~~a~a~v------~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~ 72 (263)
T PRK10803 23 AAFAQAPI------SSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDS 72 (263)
T ss_pred HHhcCCcH------HHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 56789998 344566778888888888877665444445566666666544
No 49
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=20.93 E-value=62 Score=27.44 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=14.4
Q ss_pred CCcEEEEeccCCchhHH
Q 024180 204 KVSNIVVIGHSACGGIK 220 (271)
Q Consensus 204 ~Vk~IVV~GHS~CGai~ 220 (271)
++..|+|+||.+||=-.
T Consensus 40 ~~~~I~iiG~~g~GKSt 56 (204)
T cd01878 40 GIPTVALVGYTNAGKST 56 (204)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 46799999999999655
No 50
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.61 E-value=53 Score=28.54 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=12.5
Q ss_pred cEEEEeccCCchhHH
Q 024180 206 SNIVVIGHSACGGIK 220 (271)
Q Consensus 206 k~IVV~GHS~CGai~ 220 (271)
++|+|+||.++|=..
T Consensus 1 rnv~iiG~~~~GKTt 15 (213)
T cd04167 1 RNVAIAGHLHHGKTS 15 (213)
T ss_pred CcEEEEcCCCCCHHH
Confidence 468999999999555
No 51
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=20.06 E-value=1.2e+02 Score=28.11 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=27.4
Q ss_pred CCCCCCCc---cchhhHHHHHHHHHhcCCcEEEEeccCCch
Q 024180 180 IVPPYDQT---KYAGVGAAVEYAVLHLKVSNIVVIGHSACG 217 (271)
Q Consensus 180 ~V~p~d~~---~~~~v~asLEyAV~~L~Vk~IVV~GHS~CG 217 (271)
+++|++.+ ++.+...-++|.+..+|++-|+|+|||+=+
T Consensus 8 ~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~ 48 (288)
T cd00954 8 LLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEG 48 (288)
T ss_pred eECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCc
Confidence 45566533 345666778888887799999999998654
Done!