Query 024182
Match_columns 271
No_of_seqs 126 out of 150
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00995 3a0901s06TIC22 chlor 100.0 1.2E-70 2.6E-75 500.5 25.8 264 6-271 3-270 (270)
2 PF04278 Tic22: Tic22-like fam 100.0 4.5E-62 9.8E-67 448.4 19.4 255 13-270 3-274 (274)
3 PF04278 Tic22: Tic22-like fam 99.4 8.8E-13 1.9E-17 121.9 8.9 116 52-170 150-273 (274)
4 TIGR00995 3a0901s06TIC22 chlor 99.3 1.3E-11 2.8E-16 113.5 10.0 111 53-171 151-269 (270)
5 PF11360 DUF3110: Protein of u 93.4 0.78 1.7E-05 35.6 8.6 72 84-160 1-77 (86)
6 PF07179 SseB: SseB protein N- 82.0 6 0.00013 30.9 6.6 58 189-260 54-112 (124)
7 PF11042 DUF2750: Protein of u 79.6 14 0.0003 29.1 7.9 71 81-160 12-87 (104)
8 PF11572 DUF3234: Protein of u 67.2 20 0.00044 28.5 5.8 56 82-145 7-65 (103)
9 PF00578 AhpC-TSA: AhpC/TSA fa 67.0 10 0.00022 29.3 4.3 78 81-159 4-89 (124)
10 COG1225 Bcp Peroxiredoxin [Pos 65.9 21 0.00046 30.7 6.3 80 80-163 8-98 (157)
11 cd02970 PRX_like2 Peroxiredoxi 58.3 12 0.00026 29.8 3.4 80 82-161 2-89 (149)
12 PF07179 SseB: SseB protein N- 57.3 88 0.0019 24.1 8.4 65 73-148 17-96 (124)
13 PRK00522 tpx lipid hydroperoxi 55.2 40 0.00087 28.4 6.2 84 80-169 22-119 (167)
14 COG1999 Uncharacterized protei 51.0 65 0.0014 28.5 7.1 59 84-142 49-113 (207)
15 PF10882 bPH_5: Bacterial PH d 50.0 27 0.00058 26.7 4.0 38 84-126 62-99 (100)
16 COG3691 Uncharacterized protei 48.0 46 0.001 26.4 4.9 45 103-147 31-78 (98)
17 PF11360 DUF3110: Protein of u 46.3 1.4E+02 0.003 23.1 8.1 62 189-258 16-77 (86)
18 cd02971 PRX_family Peroxiredox 45.0 97 0.0021 24.3 6.7 77 82-162 2-90 (140)
19 PF11582 DUF3240: Protein of u 42.2 44 0.00095 26.4 4.1 68 72-139 16-95 (102)
20 PF02630 SCO1-SenC: SCO1/SenC; 42.1 73 0.0016 27.1 5.8 62 79-142 29-97 (174)
21 PF07862 Nif11: Nitrogen fixat 39.0 11 0.00024 25.5 0.2 35 111-147 1-35 (49)
22 cd03017 PRX_BCP Peroxiredoxin 35.4 84 0.0018 24.7 4.9 77 81-161 2-89 (140)
23 PRK09437 bcp thioredoxin-depen 35.1 1.2E+02 0.0026 24.5 5.9 78 80-161 8-96 (154)
24 cd06578 HemD Uroporphyrinogen- 35.0 2.4E+02 0.0051 24.0 8.0 148 107-261 52-232 (239)
25 cd03018 PRX_AhpE_like Peroxire 33.8 1.5E+02 0.0033 23.5 6.2 81 80-160 5-93 (149)
26 PF02719 Polysacc_synt_2: Poly 32.7 70 0.0015 30.2 4.5 47 91-145 188-234 (293)
27 cd03016 PRX_1cys Peroxiredoxin 31.9 3.4E+02 0.0074 23.5 12.3 127 81-217 4-155 (203)
28 PF00568 WH1: WH1 domain; Int 31.7 1.3E+02 0.0029 23.7 5.4 23 104-126 88-110 (111)
29 TIGR00743 conserved hypothetic 29.0 1.7E+02 0.0036 23.3 5.4 53 104-156 29-92 (95)
30 PRK11611 enhanced serine sensi 27.9 47 0.001 30.6 2.5 22 193-214 50-71 (246)
31 PRK09981 hypothetical protein; 27.6 88 0.0019 25.0 3.6 22 104-125 28-49 (99)
32 cd02968 SCO SCO (an acronym fo 27.3 57 0.0012 25.8 2.6 79 82-161 2-95 (142)
33 cd00837 EVH1 EVH1 (Enabled, Va 27.1 1.9E+02 0.004 22.7 5.5 32 92-125 71-102 (104)
34 cd03014 PRX_Atyp2cys Peroxired 26.7 1.6E+02 0.0036 23.3 5.3 78 81-160 5-90 (143)
35 smart00461 WH1 WASP homology r 25.7 87 0.0019 24.7 3.3 24 103-126 82-105 (106)
36 PF11943 DUF3460: Protein of u 25.4 56 0.0012 23.8 1.9 19 113-131 4-22 (60)
37 PF00837 T4_deiodinase: Iodoth 24.8 1.9E+02 0.0042 26.6 5.8 120 81-215 81-236 (237)
38 PF11440 AGT: DNA alpha-glucos 23.1 28 0.0006 33.3 0.0 38 180-217 304-349 (355)
39 PF08534 Redoxin: Redoxin; In 21.3 2.4E+02 0.0052 22.3 5.3 76 81-159 5-92 (146)
40 PF13905 Thioredoxin_8: Thiore 21.2 2.1E+02 0.0045 20.8 4.6 76 104-185 2-87 (95)
41 PF09587 PGA_cap: Bacterial ca 20.9 1.5E+02 0.0033 26.4 4.4 60 116-186 170-242 (250)
42 KOG3671 Actin regulatory prote 20.3 1.5E+02 0.0032 30.4 4.4 33 92-126 106-138 (569)
No 1
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=100.00 E-value=1.2e-70 Score=500.48 Aligned_cols=264 Identities=63% Similarity=0.899 Sum_probs=233.6
Q ss_pred CCCCCCCcchhhhhHHHHHhhhhhccccccchhhhhhhhcc--CCCCCC-CCCeeeecCc-chhhhccCChHHHHhhcCC
Q 024182 6 SQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRRL--QRPPLS-VPPFAFLSQP-KQALAATLSSDFVSKTLAG 81 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~a~v~~~-~~~~a~aL~~~~i~ekL~~ 81 (271)
++..+|||+++|+||||||.|++++|++|+.+|++ +...| -+.++. .+..+..|.. ...+|+|||++||+++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~mksL~r~~~~lgl~~~~~~~s~l~~~~~alAL~e~eV~ekL~~ 81 (270)
T TIGR00995 3 SSFRRNPFLSFSRFIKHKIFVKIKFLLSRLEETKR-TAKTLLRIGATLGTIPTFAIGTWLGTTLQALTLPPEEVAKILAG 81 (270)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhccchHhhhhhhhccccccccCCHHHHHHHhcC
Confidence 34589999999999999999999999999988877 44333 111111 1111222222 2368999999999999999
Q ss_pred ccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhhhcCCeeEEEecCHH
Q 024182 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPA 161 (271)
Q Consensus 82 VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~lk~~~i~f~fvP~~~ 161 (271)
||||+|+|++|+||++++++|++++++||++++||++||+++|++||++++++||++++||+||+++.+++.|+|+|+++
T Consensus 82 VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl~~e~l~F~fiP~~~ 161 (270)
T TIGR00995 82 TSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKLKVEGIGFRFLPDPA 161 (270)
T ss_pred CceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHHhhcCccEEEeCCHH
Confidence 99999999999999999999888888877788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCCCCCceEEeccceeEeeCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHHh
Q 024182 162 QIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKME 241 (271)
Q Consensus 162 qv~~A~~L~~~~~~~~f~GVPVF~~~~Lti~~~~~~~~PvFFskeDl~~~l~~~kk~~p~~~~~~~I~V~~Le~vi~~m~ 241 (271)
||++|++|+ ++++++++|||||++++||++++|++|||+||+||||+++|+++++++|+++.+++|+|++||+||++|+
T Consensus 162 qV~~A~~ll-~~~~~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~~~~~I~V~~Le~vi~~m~ 240 (270)
T TIGR00995 162 QIKNALELP-AANSEYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKME 240 (270)
T ss_pred HHHHHHHHH-hcCccCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhCcCcCCCccEEEEeHHHHHHHHh
Confidence 999999999 4467888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceeEEEeCCcccHHHHHHHHhcC
Q 024182 242 TSEKNSGWEDLIFIPPGKSHSQHIQEVAKV 271 (271)
Q Consensus 242 ~~~~~~~~~~~vfIPp~~s~~~~i~~~~~~ 271 (271)
+++++++|.+.+|+||+.+..+|||+++|.
T Consensus 241 ~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~~ 270 (270)
T TIGR00995 241 TSEKDSGWEDQIFIPPGQEAIQHMQSLIAQ 270 (270)
T ss_pred ccCCCCcccceEEECCCHHHHHHHHHHhcC
Confidence 876788999999999998888999999873
No 2
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=100.00 E-value=4.5e-62 Score=448.44 Aligned_cols=255 Identities=45% Similarity=0.674 Sum_probs=157.1
Q ss_pred cchhhhhHHHHHhhhhhccccccchhhhhhhhc-cCCCCCCCCCeeeecCcch---hhhccCChHHHHhhcCCccEEEEE
Q 024182 13 LLSLSTFIHQNCLRLGSELSSRLDDTKRTLSRR-LQRPPLSVPPFAFLSQPKQ---ALAATLSSDFVSKTLAGTAVYTVS 88 (271)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~v~~~~~---~~a~aL~~~~i~ekL~~VPVF~Vt 88 (271)
++++++|+|+| .|+++++.+++.++.+.-+.. +...+...+.||..+.... .+++||++++|++||++||||+||
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~a~AL~~~~V~~kL~~VPVF~it 81 (274)
T PF04278_consen 3 LLSFSNFISNP-LRLGAELASRMKSLIRWSATLGLQGSLGLLPSTALGSSLGSSQPSSALALPEEEVEEKLAGVPVFTIT 81 (274)
T ss_dssp ---------------------------------------------------------------HHHHHHHHTTSEEEEEE
T ss_pred ccccccccccc-ccccccccccccccchhhhccccccccccCCchhcccccccccccccccCCHHHHHHHhcCceEEEEE
Confidence 67899999999 999999999998887744422 2333445566666666433 359999999999999999999999
Q ss_pred cCCCCeEEEeCCCC-CeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhh------hcCCeeEEEecCHH
Q 024182 89 NSSNEFVLISDPNG-AKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML------KVEGIAFRFLPDPA 161 (271)
Q Consensus 89 n~~g~pvli~~~~g-~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l------k~~~i~f~fvP~~~ 161 (271)
|++|+||+++++++ ++++++||||++||++||+++++++|++++++||++|+||+||++ +.+++.|+|+|+++
T Consensus 82 n~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~~~~~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 82 NSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLAQENKKKPEGLQFRFVPDPK 161 (274)
T ss_dssp -TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHHHHTTT-TT-EEEEEE--HH
T ss_pred CCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHHHHhhcCCcCceEEEcCCHH
Confidence 99999999999874 789999999999999999999999999999999999999999999 56899999999999
Q ss_pred HHHHHHHhhhhccC--CCCCCceEEeccc----eeEeeCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHH
Q 024182 162 QIRNALELKAADVR--TGFDGVPVFQSEL----LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLED 235 (271)
Q Consensus 162 qv~~A~~L~~~~~~--~~f~GVPVF~~~~----Lti~~~~~~~~PvFFskeDl~~~l~~~kk~~p~~~~~~~I~V~~Le~ 235 (271)
||++|++|++.+|+ ++|+|||||+.++ |+++++|++++|+||+||||+++|+++++++|+++.+++|+|++|++
T Consensus 162 qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~~kq~p~~~~~~~I~V~~Le~ 241 (274)
T PF04278_consen 162 QVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKAKKQQPDLAKEPKIQVVSLED 241 (274)
T ss_dssp HHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHHTTT-TT-----EEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHHHHhCCCCcCCceEEEEcHHH
Confidence 99999999988876 5799999999877 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCceeEEEeCCcccHHHHHHHHhc
Q 024182 236 VLKKMETSEKNSGWEDLIFIPPGKSHSQHIQEVAK 270 (271)
Q Consensus 236 vi~~m~~~~~~~~~~~~vfIPp~~s~~~~i~~~~~ 270 (271)
||+.|++++ +++|.+++||||++++ +|||+++|
T Consensus 242 vI~~m~~~~-d~~~~~i~fiP~~es~-~~i~~~~~ 274 (274)
T PF04278_consen 242 VIKTMEESD-DSDLKKIVFIPPGESL-EFIQSLKQ 274 (274)
T ss_dssp HHHHHHH----GGGGGEEEE--HHHH-HHHHTS--
T ss_pred HHHHHhcCC-CCCcceEEEECCHHHH-HHHHHhcC
Confidence 999999976 7899999999999999 99998865
No 3
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=99.40 E-value=8.8e-13 Score=121.89 Aligned_cols=116 Identities=23% Similarity=0.350 Sum_probs=80.9
Q ss_pred CCCCeeeecCcch-hhhccCChH--HHHhhcCCccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcc
Q 024182 52 SVPPFAFLSQPKQ-ALAATLSSD--FVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRK 128 (271)
Q Consensus 52 ~~~~~a~v~~~~~-~~a~aL~~~--~i~ekL~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P 128 (271)
.+..|+++|.+++ ..|+.|..+ +-.+.+.|||||.+.+++ .++.+. ++++.++++||+++|+++.++++++++|
T Consensus 150 ~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~-~~Lti~--~~~~~~iPlFF~kedL~~~l~k~~kq~p 226 (274)
T PF04278_consen 150 EGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGK-GYLTIK--QDNKRIIPLFFDKEDLQAALEKAKKQQP 226 (274)
T ss_dssp T-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST--B-EET--TTTEEEEEEESSHHHHHHHHHHHTTT-T
T ss_pred cCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCC-ceEEEe--eCCeEEEEEEecHHHHHHHHHHHHHhCC
Confidence 5789999999988 777888333 444889999999999999 777664 5678899999999999999999999999
Q ss_pred cccCCceEEEEehhhHHhh--hcCC---eeEEEecCHHHHHHHHHhh
Q 024182 129 ELRSAAKVVPITLDQVYML--KVEG---IAFRFLPDPAQIRNALELK 170 (271)
Q Consensus 129 ~~~~~~kV~~vsL~~vy~l--k~~~---i~f~fvP~~~qv~~A~~L~ 170 (271)
+++.+.+|.+++|+.+.+. ..++ -.+.|||+.+.++.++++.
T Consensus 227 ~~~~~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~ 273 (274)
T PF04278_consen 227 DLAKEPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLK 273 (274)
T ss_dssp T-----EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS-
T ss_pred CCcCCceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhc
Confidence 9999999999999999976 2222 5888999999999997764
No 4
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=99.29 E-value=1.3e-11 Score=113.50 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=93.3
Q ss_pred CCCeeeecCcch-hhhccCChHHHHhhcCCccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhccccc
Q 024182 53 VPPFAFLSQPKQ-ALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELR 131 (271)
Q Consensus 53 ~~~~a~v~~~~~-~~a~aL~~~~i~ekL~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~ 131 (271)
.+.|+++|.+++ ..|+.|... -.+...|||||.+ +++++. ++++.+++|||+++|+++.|+++|+++|+++
T Consensus 151 ~l~F~fiP~~~qV~~A~~ll~~-~~~~~~GVPlF~~-----~~Lti~--~~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~ 222 (270)
T TIGR00995 151 GIGFRFLPDPAQIKNALELPAA-NSEYFDGVPVFQS-----GLLVVQ--KKNERYCPVYFSKEDIEQELSKFKRESPGMA 222 (270)
T ss_pred CccEEEeCCHHHHHHHHHHHhc-CccCCCCccEEee-----cceEEE--eCCeEEEeeEeeHHHHHHHHHHHhHhCcCcC
Confidence 499999999988 777777622 3455679999999 777774 4568899999999999999999999999999
Q ss_pred CCceEEEEehhhHHhh-hc---C---CeeEEEecCHHHHHHHHHhhh
Q 024182 132 SAAKVVPITLDQVYML-KV---E---GIAFRFLPDPAQIRNALELKA 171 (271)
Q Consensus 132 ~~~kV~~vsL~~vy~l-k~---~---~i~f~fvP~~~qv~~A~~L~~ 171 (271)
.+.+|.+++|+.+.+. +. + .-...|+|+++.+++++++.+
T Consensus 223 ~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~ 269 (270)
T TIGR00995 223 DSQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQHMQSLIA 269 (270)
T ss_pred CCccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHHHHHHhc
Confidence 9999999999999976 22 2 257789999999999998753
No 5
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=93.40 E-value=0.78 Score=35.63 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=54.9
Q ss_pred EEEEE----cCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhh-hcCCeeEEEec
Q 024182 84 VYTVS----NSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML-KVEGIAFRFLP 158 (271)
Q Consensus 84 VF~Vt----n~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l-k~~~i~f~fvP 158 (271)
||+++ +.+++.+.++.. ++.+.++|=+.+||+.|...|..+.- ....|..+..+.+..+ ++.|..+++||
T Consensus 1 v~VL~f~~~~~~eGI~si~~~--~~~~Vl~FE~edDA~RYa~lLEAqd~---~~p~Ve~id~~~i~~fC~~~gy~~~iv~ 75 (86)
T PF11360_consen 1 VYVLLFNAGTETEGIYSIQNK--DRNVVLMFEDEDDAERYAGLLEAQDF---PDPTVEEIDPEEIEEFCRSAGYEYEIVP 75 (86)
T ss_pred CEEEEecCCCCCCcEEEEEeC--CCCEEEEEccHHHHHHHHHHHHhcCC---CCCCeEEECHHHHHHHHHHCCceEEEEC
Confidence 45666 345577777643 36688899999999999999987542 2347999999999998 67788899988
Q ss_pred CH
Q 024182 159 DP 160 (271)
Q Consensus 159 ~~ 160 (271)
.-
T Consensus 76 ~g 77 (86)
T PF11360_consen 76 PG 77 (86)
T ss_pred CC
Confidence 64
No 6
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=81.98 E-value=6 Score=30.92 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=43.0
Q ss_pred eeEe-eCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHHhhcCCCCCceeEEEeCCccc
Q 024182 189 LVVK-KKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPGKS 260 (271)
Q Consensus 189 Lti~-~~~~~~~PvFFskeDl~~~l~~~kk~~p~~~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~vfIPp~~s 260 (271)
+++. .+|++++|+|.+.+.+.+... . ...+.++++.++++.+.. . + ..-+++=|-+..
T Consensus 54 ~~~~~~dg~~~lpvFTs~e~l~~~~~----~------~~~~~~~~~~~l~~~~~~-~--~-~~giviNP~~~~ 112 (124)
T PF07179_consen 54 LTLEDPDGERYLPVFTSWEELEKWYP----D------ERPIIVVPFEDLLEMLLN-N--E-GDGIVINPGTPS 112 (124)
T ss_pred EEEEcCCCCEEEEEECCHHHHHhhhc----c------cCceecccHHHHHHHhhc-C--C-CcEEEEECCCCc
Confidence 4444 688999999999999998865 1 355789999999999972 1 1 246666666654
No 7
>PF11042 DUF2750: Protein of unknown function (DUF2750); InterPro: IPR021284 This family is conserved in Proteobacteria. The function is not known.
Probab=79.57 E-value=14 Score=29.11 Aligned_cols=71 Identities=24% Similarity=0.379 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHh-----hhcCCeeEE
Q 024182 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYM-----LKVEGIAFR 155 (271)
Q Consensus 81 ~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~-----lk~~~i~f~ 155 (271)
.==||++.+++| .++....++ ..+.+|+=+++-|++.... + ..+.++..++|+...+ |..+++..-
T Consensus 12 ~e~vw~L~~~~g-~~~~~~~~~-~~~~p~W~~~~~A~~~~~~------e-w~~~~~~~I~L~~Fle~wl~~L~~d~~~vg 82 (104)
T PF11042_consen 12 SEEVWGLKDEDG-WVLCDSDEG-EDVLPFWPSKEFAEACATD------E-WADYKPKEISLDEFLEEWLPGLQEDGVLVG 82 (104)
T ss_pred CCEEEEEEcCCc-EEEeecCCC-cEEEEeCCCHHHHHHHHhc------c-cccCeEEEEEHHHHHHHHhHhHHHCCCEEE
Confidence 445899999999 776665443 4478888899999986654 1 4578999999999887 355665555
Q ss_pred EecCH
Q 024182 156 FLPDP 160 (271)
Q Consensus 156 fvP~~ 160 (271)
+-|+.
T Consensus 83 v~~~~ 87 (104)
T PF11042_consen 83 VFPNP 87 (104)
T ss_pred EecCC
Confidence 55544
No 8
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=67.21 E-value=20 Score=28.46 Aligned_cols=56 Identities=23% Similarity=0.442 Sum_probs=40.2
Q ss_pred ccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEe---hhhHH
Q 024182 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPIT---LDQVY 145 (271)
Q Consensus 82 VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vs---L~~vy 145 (271)
=|=|++.|..|+-++...- | ....++..|.++|++|+++ +|+ .+.||.++- |.++|
T Consensus 7 g~WYVLe~~pGEHLvleal-g-qrls~iWtS~~~A~~F~~~----~p~--~GM~V~~Le~~aLKeaf 65 (103)
T PF11572_consen 7 GTWYVLEDEPGEHLVLEAL-G-QRLSGIWTSRELAQAFLAR----HPE--LGMRVSPLESWALKEAF 65 (103)
T ss_dssp SSEEEEESSTT-BEEEEET-T-EEEEEEBSSHHHHHHHHHT----STS--S--EEEEE-SHHHHHHH
T ss_pred cceEEecCCCCceeeHHHH-h-hhHHhheecHHHHHHHHHh----Ccc--cCcEeecchhHHHHHHH
Confidence 4679999999998888542 3 4488899999999999976 677 478888773 44554
No 9
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=66.97 E-value=10 Score=29.27 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCCeEEEeCCCCCeeEEEEEecH---HHHHHHHHHHHHhccccc-CCceEEEEehhhHHhhh----cCCe
Q 024182 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ---EDAEAFLAQVRLRRKELR-SAAKVVPITLDQVYMLK----VEGI 152 (271)
Q Consensus 81 ~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~---~DA~a~L~~lk~~~P~~~-~~~kV~~vsL~~vy~lk----~~~i 152 (271)
.+|-|.++|.+|..+..+.-.| +.+.++|++- ....+.+.++.+...++. .+++|..|+.+...+++ ..++
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~g-k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKG-KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTT-SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred CCCCcEeECCCCCEEEHHHHCC-CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 5799999999999988876655 5555555543 344444444444333332 47999999999887663 3457
Q ss_pred eEEEecC
Q 024182 153 AFRFLPD 159 (271)
Q Consensus 153 ~f~fvP~ 159 (271)
.|.++-|
T Consensus 83 ~~~~~~D 89 (124)
T PF00578_consen 83 PFPVLSD 89 (124)
T ss_dssp SSEEEEE
T ss_pred ccccccC
Confidence 7777776
No 10
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=65.86 E-value=21 Score=30.70 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCccEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhhh----
Q 024182 80 AGTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK---- 148 (271)
Q Consensus 80 ~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~-------s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~lk---- 148 (271)
...|=|.+.|.+|+.+..++-.|. .|.++|+ +-.+|.+|-+.+..-+ ..++.|.-||-|.+..++
T Consensus 8 ~~aPdF~Lp~~~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~---~~~a~V~GIS~Ds~~~~~~F~~ 83 (157)
T COG1225 8 DKAPDFELPDQDGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFE---KLGAVVLGISPDSPKSHKKFAE 83 (157)
T ss_pred CcCCCeEeecCCCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHH---hCCCEEEEEeCCCHHHHHHHHH
Confidence 357999999999999888877775 5655555 4467887766655432 137999999999999984
Q ss_pred cCCeeEEEecCHHHH
Q 024182 149 VEGIAFRFLPDPAQI 163 (271)
Q Consensus 149 ~~~i~f~fvP~~~qv 163 (271)
..++.|.++.|...-
T Consensus 84 k~~L~f~LLSD~~~~ 98 (157)
T COG1225 84 KHGLTFPLLSDEDGE 98 (157)
T ss_pred HhCCCceeeECCcHH
Confidence 478999999998543
No 11
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=58.30 E-value=12 Score=29.80 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=46.8
Q ss_pred ccEEEEEcCCCCeEEEeCCCCCeeEEEEEec---HHHHHHHHHHHHHhcccc-cCCceEEEEehhhHHhh----hcCCee
Q 024182 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFR---QEDAEAFLAQVRLRRKEL-RSAAKVVPITLDQVYML----KVEGIA 153 (271)
Q Consensus 82 VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s---~~DA~a~L~~lk~~~P~~-~~~~kV~~vsL~~vy~l----k~~~i~ 153 (271)
.|-|+++|.+|..+..+.-.+++.+.++|+. =--..+.+..+.+...++ ..+++|..|+.+....+ +..++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~ 81 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLP 81 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCC
Confidence 5889999999988876543333334445542 111222233333332233 24689999998876654 235677
Q ss_pred EEEecCHH
Q 024182 154 FRFLPDPA 161 (271)
Q Consensus 154 f~fvP~~~ 161 (271)
|.++-|+.
T Consensus 82 ~p~~~D~~ 89 (149)
T cd02970 82 FPVYADPD 89 (149)
T ss_pred CeEEECCc
Confidence 78777754
No 12
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=57.31 E-value=88 Score=24.14 Aligned_cols=65 Identities=11% Similarity=0.230 Sum_probs=45.7
Q ss_pred HHHHhhcCCccEEEEEcCCCCe---------------EEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEE
Q 024182 73 DFVSKTLAGTAVYTVSNSSNEF---------------VLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVV 137 (271)
Q Consensus 73 ~~i~ekL~~VPVF~Vtn~~g~p---------------vli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~ 137 (271)
..+.+.|..--+|+.++..+.. .++..++| +.+.++|.|.+...++.. ....+.
T Consensus 17 ~~~~~~L~~a~~lvpv~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~~~lpvFTs~e~l~~~~~----------~~~~~~ 85 (124)
T PF07179_consen 17 EAFLEALLKAEVLVPVDVDDDDEGGEIEFDDDSEIQFLTLEDPDG-ERYLPVFTSWEELEKWYP----------DERPII 85 (124)
T ss_pred HHHHHHHhhCeEEEEEecccccccccccccCCCcceeEEEEcCCC-CEEEEEECCHHHHHhhhc----------ccCcee
Confidence 3566666666666666665544 66765565 558899999998888877 234567
Q ss_pred EEehhhHHhhh
Q 024182 138 PITLDQVYMLK 148 (271)
Q Consensus 138 ~vsL~~vy~lk 148 (271)
.++...++++-
T Consensus 86 ~~~~~~l~~~~ 96 (124)
T PF07179_consen 86 VVPFEDLLEML 96 (124)
T ss_pred cccHHHHHHHh
Confidence 88888888773
No 13
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=55.24 E-value=40 Score=28.37 Aligned_cols=84 Identities=21% Similarity=0.194 Sum_probs=52.3
Q ss_pred CCccEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhhh----
Q 024182 80 AGTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK---- 148 (271)
Q Consensus 80 ~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~-------s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~lk---- 148 (271)
+..|-|++.|.+|..+..+.-.|. .+.++|+ +..++-++-+ +.. +. .+++|..|+.|..+.++
T Consensus 22 ~~~P~f~l~~~~g~~v~l~~~~Gk-~vvl~f~~s~~cp~C~~e~~~l~~-~~~---~~-~~~~vv~vs~D~~~~~~~f~~ 95 (167)
T PRK00522 22 DKAPDFTLVANDLSDVSLADFAGK-RKVLNIFPSIDTGVCATSVRKFNQ-EAA---EL-DNTVVLCISADLPFAQKRFCG 95 (167)
T ss_pred CCCCCeEEEcCCCcEEehHHhCCC-EEEEEEEcCCCCCccHHHHHHHHH-HHH---Hc-CCcEEEEEeCCCHHHHHHHHH
Confidence 467999999999988777654553 3444444 3444444333 222 33 37899999999887663
Q ss_pred cCCee-EEEecCHH--HHHHHHHh
Q 024182 149 VEGIA-FRFLPDPA--QIRNALEL 169 (271)
Q Consensus 149 ~~~i~-f~fvP~~~--qv~~A~~L 169 (271)
..++. |.++.|.. ++..+..+
T Consensus 96 ~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 96 AEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred hCCCCCceEeecCCccHHHHHhCC
Confidence 34564 78888842 45444443
No 14
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=51.01 E-value=65 Score=28.51 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=38.3
Q ss_pred EEEEEcCCCCeEEEeCCCCCeeEEEEEe------cHHHHHHHHHHHHHhcccccCCceEEEEehh
Q 024182 84 VYTVSNSSNEFVLISDPNGAKSIGLLCF------RQEDAEAFLAQVRLRRKELRSAAKVVPITLD 142 (271)
Q Consensus 84 VF~Vtn~~g~pvli~~~~g~~~v~~~F~------s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~ 142 (271)
-|.++|.+|+++....-.|.-.+..|.+ ++..-..+.+-+++-....+.+++|..|++|
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD 113 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD 113 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC
Confidence 5899999999998876666544443333 3444333444444443244678999999998
No 15
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=50.02 E-value=27 Score=26.71 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=27.4
Q ss_pred EEEEEcCCCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHh
Q 024182 84 VYTVSNSSNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLR 126 (271)
Q Consensus 84 VF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~ 126 (271)
+++.++.....+++...+ . .+++|++|.+.|+++++++
T Consensus 62 ~~~y~t~~~~~i~I~t~~-~----~y~isp~~~~~fi~~l~~r 99 (100)
T PF10882_consen 62 VRLYATRNKNVILIKTKD-K----TYVISPEDPEEFIEALKKR 99 (100)
T ss_pred EEEEEECCCCEEEEEECC-c----eEEEcCCCHHHHHHHHHhc
Confidence 455455566777776544 2 2568999999999999875
No 16
>COG3691 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.02 E-value=46 Score=26.44 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=29.3
Q ss_pred CeeEEEEEecHHHHHHHHHHHHHhcccccC---CceEEEEehhhHHhh
Q 024182 103 AKSIGLLCFRQEDAEAFLAQVRLRRKELRS---AAKVVPITLDQVYML 147 (271)
Q Consensus 103 ~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~---~~kV~~vsL~~vy~l 147 (271)
...+-.||=++.+|+++|+.+...-...-+ ++.-....++.-|+|
T Consensus 31 t~~~s~~~as~a~ae~~La~lt~kAr~veSepc~I~~ei~~vedgv~L 78 (98)
T COG3691 31 TAEYSRFFATRAEAEEALAALTEKARAVESEPCEIEYEITDVEDGVEL 78 (98)
T ss_pred eEEEEEEecCHHHHHHHHHHHHHHHHhhccCcceeeeeeEeccCcEEE
Confidence 456888999999999999998864333222 233334444555555
No 17
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=46.34 E-value=1.4e+02 Score=23.12 Aligned_cols=62 Identities=11% Similarity=0.218 Sum_probs=46.9
Q ss_pred eeEeeCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeHHHHHHHHhhcCCCCCceeEEEeCCc
Q 024182 189 LVVKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSLEDVLKKMETSEKNSGWEDLIFIPPG 258 (271)
Q Consensus 189 Lti~~~~~~~~PvFFskeDl~~~l~~~kk~~p~~~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~vfIPp~ 258 (271)
-++..+++..+.+|=+++|+++--.-+..+.- ..+.|+-++-++|...-++.. -...+||++
T Consensus 16 ~si~~~~~~~Vl~FE~edDA~RYa~lLEAqd~---~~p~Ve~id~~~i~~fC~~~g-----y~~~iv~~g 77 (86)
T PF11360_consen 16 YSIQNKDRNVVLMFEDEDDAERYAGLLEAQDF---PDPTVEEIDPEEIEEFCRSAG-----YEYEIVPPG 77 (86)
T ss_pred EEEEeCCCCEEEEEccHHHHHHHHHHHHhcCC---CCCCeEEECHHHHHHHHHHCC-----ceEEEECCC
Confidence 35666778999999999999998777755431 136899999999999988632 456666666
No 18
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=44.96 E-value=97 Score=24.25 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=48.0
Q ss_pred ccEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhh----hcC
Q 024182 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML----KVE 150 (271)
Q Consensus 82 VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~-------s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l----k~~ 150 (271)
+|-|.+.|.+|..+..+.-.| +.+.++|+ +..++..+.+...+-. ..++.|..|+.+..-.+ +..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~g-k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~---~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKG-KWVVLFFYPKDFTPVCTTELCAFRDLAEEFA---KGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCceeccCCCcEEehHHhCC-CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHhcc
Confidence 588999999999888765444 43444554 2444433333222211 24688999999866554 223
Q ss_pred -CeeEEEecCHHH
Q 024182 151 -GIAFRFLPDPAQ 162 (271)
Q Consensus 151 -~i~f~fvP~~~q 162 (271)
+..|.++-|...
T Consensus 78 ~~~~~~~l~D~~~ 90 (140)
T cd02971 78 GGLNFPLLSDPDG 90 (140)
T ss_pred cCCCceEEECCCh
Confidence 678888888754
No 19
>PF11582 DUF3240: Protein of unknown function (DUF3240); InterPro: IPR021634 This family of proteins with unknown function appears to be restricted to Proteobacteria. ; PDB: 3CE8_A.
Probab=42.16 E-value=44 Score=26.41 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=36.2
Q ss_pred hHHHHhhcCC----ccEEEEEcCCC---CeEEEeCCC---C--CeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEE
Q 024182 72 SDFVSKTLAG----TAVYTVSNSSN---EFVLISDPN---G--AKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPI 139 (271)
Q Consensus 72 ~~~i~ekL~~----VPVF~Vtn~~g---~pvli~~~~---g--~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~v 139 (271)
++.+++.|-. ++=|++.+-.| ..-..+... | .....-+++..++|+.+|+.++...+.-.--.-|.||
T Consensus 16 ed~lvD~Ll~~~~~v~GFt~~~~~g~g~~~~~~s~~EQV~G~~~~~~~~~~~~~~~~~~Ll~~L~~~~~~~~i~ywv~Pv 95 (102)
T PF11582_consen 16 EDALVDYLLELPDGVSGFTSSPAEGHGSRHSLLSAAEQVSGRARRVRFQVILPEEDAEELLAALKQEFAGTGIRYWVTPV 95 (102)
T ss_dssp HHHHHHHHTT--TT----EEEEEEEEE-------------EEEEEEEEEEEEEGGGHHHHHHHHHHHTTTS--EEEEEE-
T ss_pred HHHHHHHHHHhcCccCCceEeeccccCCcccCCCHHHhcccccceEEEEEEECHHHHHHHHHHHHHHcCCCCcEEEEEhH
Confidence 3455655544 45588888777 222222111 2 2234668999999999999999987653223444444
No 20
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=42.11 E-value=73 Score=27.12 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=35.0
Q ss_pred cCCccEEEEEcCCCCeEEEeCCCCCeeEEEEEe------cHHHHHHHHHHHHH-hcccccCCceEEEEehh
Q 024182 79 LAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCF------RQEDAEAFLAQVRL-RRKELRSAAKVVPITLD 142 (271)
Q Consensus 79 L~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~------s~~DA~a~L~~lk~-~~P~~~~~~kV~~vsL~ 142 (271)
-..+|-|.++|.+|..+....-+|.-.+..|++ ++.-... +.++.+ -..+ +.++++..||+|
T Consensus 29 ~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~-l~~~~~~l~~~-~~~v~~v~ISvD 97 (174)
T PF02630_consen 29 PRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLAN-LSQLQKQLGEE-GKDVQFVFISVD 97 (174)
T ss_dssp SCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHH-HHHHHHHHHHT-TTTEEEEEEESS
T ss_pred CccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHH-HHHHHHHhhhc-cCceEEEEEEeC
Confidence 345777999999999998765565433333333 2222222 222222 1112 467899999988
No 21
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=38.98 E-value=11 Score=25.52 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=24.9
Q ss_pred ecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhh
Q 024182 111 FRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML 147 (271)
Q Consensus 111 ~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l 147 (271)
||.+++++|++.++ .+|+++.+++-. -+.+.+..+
T Consensus 1 MS~~~l~~Fl~~~~-~d~~l~~~l~~~-~~~~e~~~l 35 (49)
T PF07862_consen 1 MSIESLKAFLEKVK-SDPELREQLKAC-QNPEEVVAL 35 (49)
T ss_pred CCHHHHHHHHHHHh-cCHHHHHHHHhc-CCHHHHHHH
Confidence 78999999999995 567777665432 266666665
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=35.43 E-value=84 Score=24.68 Aligned_cols=77 Identities=26% Similarity=0.362 Sum_probs=47.8
Q ss_pred CccEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhh----hc
Q 024182 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML----KV 149 (271)
Q Consensus 81 ~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~-------s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l----k~ 149 (271)
..|=|.++|.+|..+....-.| +.+.++|+ +......+ +++..+-. .+++.|..|+.+..-++ +.
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~g-k~~ll~f~~~~~cp~C~~~~~~l-~~~~~~~~--~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRG-KPVVLYFYPKDDTPGCTKEACDF-RDLYEEFK--ALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCC-CcEEEEEeCCCCCCchHHHHHHH-HHHHHHHH--HCCCEEEEEcCCCHHHHHHHHHH
Confidence 4688999999999888766555 43444444 33433332 23332221 14688999998876655 23
Q ss_pred CCeeEEEecCHH
Q 024182 150 EGIAFRFLPDPA 161 (271)
Q Consensus 150 ~~i~f~fvP~~~ 161 (271)
.++.|.++-|..
T Consensus 78 ~~~~~~~l~D~~ 89 (140)
T cd03017 78 YGLPFPLLSDPD 89 (140)
T ss_pred hCCCceEEECCc
Confidence 567788887764
No 23
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=35.12 E-value=1.2e+02 Score=24.51 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=47.9
Q ss_pred CCccEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhh----h
Q 024182 80 AGTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML----K 148 (271)
Q Consensus 80 ~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~-------s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l----k 148 (271)
+..|-|.++|.+|+.+....-.| +.+..+|+ +......+ +++.+... .++++|..|+.+...++ +
T Consensus 8 ~~~p~f~l~~~~G~~~~l~~~~g-k~~ll~f~~~~~~p~C~~~~~~l-~~~~~~~~--~~~v~vi~Is~d~~~~~~~~~~ 83 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVSLTDFQG-QRVLVYFYPKAMTPGCTVQACGL-RDNMDELK--KAGVVVLGISTDKPEKLSRFAE 83 (154)
T ss_pred CcCCCcEeeCCCCCEEeHHHhCC-CCEEEEEECCCCCCchHHHHHHH-HHHHHHHH--HCCCEEEEEcCCCHHHHHHHHH
Confidence 35688999999998777655455 33433443 33333333 33322211 24699999999877665 3
Q ss_pred cCCeeEEEecCHH
Q 024182 149 VEGIAFRFLPDPA 161 (271)
Q Consensus 149 ~~~i~f~fvP~~~ 161 (271)
..++.|.++-|..
T Consensus 84 ~~~~~~~~l~D~~ 96 (154)
T PRK09437 84 KELLNFTLLSDED 96 (154)
T ss_pred HhCCCCeEEECCC
Confidence 3577888887754
No 24
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=35.04 E-value=2.4e+02 Score=23.96 Aligned_cols=148 Identities=12% Similarity=0.186 Sum_probs=85.6
Q ss_pred EEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhhhcCCeeEEEecCHHHHHHHHHhhhhc---c--------C
Q 024182 107 GLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAAD---V--------R 175 (271)
Q Consensus 107 ~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~lk~~~i~f~fvP~~~qv~~A~~L~~~~---~--------~ 175 (271)
+.+|+|+.-++.+.+.++...+....+.++.+|.=..+-.++..|..-.++|+....+...+++... + .
T Consensus 52 ~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~ 131 (239)
T cd06578 52 WLIFTSPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGG 131 (239)
T ss_pred EEEEECHHHHHHHHHHHHhhCCccccCCEEEEECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCc
Confidence 5699999999999999987655555678888887777767777776666666555555544443321 0 0
Q ss_pred ------------CC--CCCceEEecccee--------EeeCCeEEeeeeecHHHHHHHHHHHHHhcCCCCCcceEEEEeH
Q 024182 176 ------------TG--FDGVPVFQSELLV--------VKKKNKRYCPVYFQKEDIEKELSKVSRASRGAGVSQHIMVGSL 233 (271)
Q Consensus 176 ------------~~--f~GVPVF~~~~Lt--------i~~~~~~~~PvFFskeDl~~~l~~~kk~~p~~~~~~~I~V~~L 233 (271)
.+ ...+|+|....+. +...... .=+|+|.+.++...+.+.+.+. ..-.++.++.+
T Consensus 132 ~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~-~iiftS~~~v~~f~~~~~~~~~--~~~~~~~~~ai 208 (239)
T cd06578 132 RAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLEEGAID-AVLFTSPSTVRNLLELLGKEGR--ALLKNVKIAAI 208 (239)
T ss_pred chhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHHHcCCCc-EEEEeCHHHHHHHHHHHhhhhh--hhhcCCeEEEE
Confidence 00 1124444422211 1111111 3488888888888887765431 11234666666
Q ss_pred HHHHHHHhhcCCCCCceeEEEeCCcccH
Q 024182 234 EDVLKKMETSEKNSGWEDLIFIPPGKSH 261 (271)
Q Consensus 234 e~vi~~m~~~~~~~~~~~~vfIPp~~s~ 261 (271)
+.-....-+. - ..+.+++|...+.
T Consensus 209 g~~t~~~l~~---~-g~~~~~~~~~~~~ 232 (239)
T cd06578 209 GPRTAEALRE---L-GLKVVIVAESPTL 232 (239)
T ss_pred CHHHHHHHHH---c-CCCceeeecCCCh
Confidence 6666554321 1 2345567766655
No 25
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=33.82 E-value=1.5e+02 Score=23.51 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=46.1
Q ss_pred CCccEEEEEcCCCCeEEEeCCCCCeeEEEEEecH---HHHHHHHHHHHHhccccc-CCceEEEEehhhHHhh----hcCC
Q 024182 80 AGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ---EDAEAFLAQVRLRRKELR-SAAKVVPITLDQVYML----KVEG 151 (271)
Q Consensus 80 ~~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~---~DA~a~L~~lk~~~P~~~-~~~kV~~vsL~~vy~l----k~~~ 151 (271)
..+|-|.+++.+|..+-.+.-.|.+.+.++|+.- .-....+.++++...++. ++++|..|+.+..-.+ +..+
T Consensus 5 ~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 5 DKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred CcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 3567889999999988776545534455455410 111122222222222222 4688999998864444 2346
Q ss_pred eeEEEecCH
Q 024182 152 IAFRFLPDP 160 (271)
Q Consensus 152 i~f~fvP~~ 160 (271)
+.|.++-|.
T Consensus 85 ~~~~~~~D~ 93 (149)
T cd03018 85 LTFPLLSDF 93 (149)
T ss_pred CCceEecCC
Confidence 777777765
No 26
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=32.68 E-value=70 Score=30.24 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=27.6
Q ss_pred CCCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHH
Q 024182 91 SNEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVY 145 (271)
Q Consensus 91 ~g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy 145 (271)
+|.||++++++ +..|||+.+||-.++-+--.. +.+-.|....||+.+
T Consensus 188 ~g~PlTvT~p~----mtRffmti~EAv~Lvl~a~~~----~~~geifvl~mg~~v 234 (293)
T PF02719_consen 188 NGGPLTVTDPD----MTRFFMTIEEAVQLVLQAAAL----AKGGEIFVLDMGEPV 234 (293)
T ss_dssp TTSSEEECETT-----EEEEE-HHHHHHHHHHHHHH------TTEEEEE---TCE
T ss_pred cCCcceeCCCC----cEEEEecHHHHHHHHHHHHhh----CCCCcEEEecCCCCc
Confidence 46788886655 778999999999987765442 234456555554443
No 27
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=31.92 E-value=3.4e+02 Score=23.51 Aligned_cols=127 Identities=14% Similarity=0.204 Sum_probs=66.4
Q ss_pred CccEEEEEcCCCCeEEEeCCCCCeeEEEEEe-------cHHHHHHHHHHHHHhcccc-cCCceEEEEehhhHHhhh----
Q 024182 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCF-------RQEDAEAFLAQVRLRRKEL-RSAAKVVPITLDQVYMLK---- 148 (271)
Q Consensus 81 ~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~-------s~~DA~a~L~~lk~~~P~~-~~~~kV~~vsL~~vy~lk---- 148 (271)
..|-|++.+..|. +..++-.|++.+.+||+ +..+..++-+. . +++ ..+++|..|+.+.....+
T Consensus 4 ~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~-~---~~f~~~gv~vigvS~D~~~~~~~~~~ 78 (203)
T cd03016 4 TAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKL-A---PEFKKRNVKLIGLSVDSVESHIKWIE 78 (203)
T ss_pred CCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHH-H---HHHHHcCCEEEEEECCCHHHHHHHHh
Confidence 4688999888875 44433334344555554 44544433222 2 222 246899999999876541
Q ss_pred ------cCCeeEEEecCHH-HHHHHHHhhhhccCCCCCCceEEeccceeEeeCCeEE-e---e--eeecHHHHHHHHHHH
Q 024182 149 ------VEGIAFRFLPDPA-QIRNALELKAADVRTGFDGVPVFQSELLVVKKKNKRY-C---P--VYFQKEDIEKELSKV 215 (271)
Q Consensus 149 ------~~~i~f~fvP~~~-qv~~A~~L~~~~~~~~f~GVPVF~~~~Lti~~~~~~~-~---P--vFFskeDl~~~l~~~ 215 (271)
..++.|.++.|.. ++..+..+... . .|.|.-.-....|.++++-. + | .--+.+++.+.++.+
T Consensus 79 ~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~---~--~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 79 DIEEYTGVEIPFPIIADPDREVAKLLGMIDP---D--AGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred hHHHhcCCCCceeEEECchHHHHHHcCCccc---c--CCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 1478899998864 23333322211 1 24453222333444444321 1 1 112467777777666
Q ss_pred HH
Q 024182 216 SR 217 (271)
Q Consensus 216 kk 217 (271)
..
T Consensus 154 q~ 155 (203)
T cd03016 154 QL 155 (203)
T ss_pred hh
Confidence 44
No 28
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=31.70 E-value=1.3e+02 Score=23.69 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred eeEEEEEecHHHHHHHHHHHHHh
Q 024182 104 KSIGLLCFRQEDAEAFLAQVRLR 126 (271)
Q Consensus 104 ~~v~~~F~s~~DA~a~L~~lk~~ 126 (271)
..+|+-|-+.+||.+|.+.+.+.
T Consensus 88 ~~~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 88 CVYGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHhcc
Confidence 37999999999999999998864
No 29
>TIGR00743 conserved hypothetical protein. These small proteins are approximately 100 amino acids in length and appear to be found only in gamma proteobacteria. The function of this protein family is unknown.
Probab=28.95 E-value=1.7e+02 Score=23.26 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=32.7
Q ss_pred eeEEEEEecHHHHHHHHHHHHHhcccccC---CceEEEEehhhHHhhh--------cCCeeEEE
Q 024182 104 KSIGLLCFRQEDAEAFLAQVRLRRKELRS---AAKVVPITLDQVYMLK--------VEGIAFRF 156 (271)
Q Consensus 104 ~~v~~~F~s~~DA~a~L~~lk~~~P~~~~---~~kV~~vsL~~vy~lk--------~~~i~f~f 156 (271)
-.+..+|=++++|+++|+.+...-.+.-+ .++-...+.+.-++|+ -+.+.|++
T Consensus 29 a~~~~~~~~~~~Ae~~l~~l~ekAk~vesepc~I~~~i~~~e~g~~L~a~F~FsCqAEklIFQL 92 (95)
T TIGR00743 29 SKFSRFFATRAEAESFLAKLTEKARAVESEPCEIASEITDVEDGVELDADFTFSCQAEMIIFEL 92 (95)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHHhhcCCceeEEEEEEcCCcEEEEEEEEEEEEeeeEEEEe
Confidence 35677888999999999987653323223 2444444446666663 25666654
No 30
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=27.91 E-value=47 Score=30.64 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=19.0
Q ss_pred eCCeEEeeeeecHHHHHHHHHH
Q 024182 193 KKNKRYCPVYFQKEDIEKELSK 214 (271)
Q Consensus 193 ~~~~~~~PvFFskeDl~~~l~~ 214 (271)
.+|+.++|+|.|.+.++.++..
T Consensus 50 ~dG~~~iP~FTS~e~l~~a~~~ 71 (246)
T PRK11611 50 EDGTSVIPFFTSLEALQQAVED 71 (246)
T ss_pred CCCCEEEEEeCCHHHHHHhhhc
Confidence 4899999999999999977643
No 31
>PRK09981 hypothetical protein; Provisional
Probab=27.64 E-value=88 Score=25.01 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=18.6
Q ss_pred eeEEEEEecHHHHHHHHHHHHH
Q 024182 104 KSIGLLCFRQEDAEAFLAQVRL 125 (271)
Q Consensus 104 ~~v~~~F~s~~DA~a~L~~lk~ 125 (271)
-.+-.+|.++++|+++|+.+..
T Consensus 28 a~~~~~~~~~~~Ae~~l~~l~e 49 (99)
T PRK09981 28 SKFSRFFATREEAESFMTKLKE 49 (99)
T ss_pred EEEEEEeCCHHHHHHHHHHHHH
Confidence 4577899999999999998764
No 32
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=27.30 E-value=57 Score=25.76 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=44.6
Q ss_pred ccEEEEEcCCCCeEEEeCCCCCeeEEEEEecH---HHHHHHHHHHHHhccccc----CCceEEEEehhhH----Hhh---
Q 024182 82 TAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ---EDAEAFLAQVRLRRKELR----SAAKVVPITLDQV----YML--- 147 (271)
Q Consensus 82 VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~---~DA~a~L~~lk~~~P~~~----~~~kV~~vsL~~v----y~l--- 147 (271)
.|-|++.|.+|..+-...-.| +.+.++|+.. .-..+.+..+++...++. .+++|..|+.+.- -.+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~g-k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKG-KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCceEEEcCCCCEEchHHhCC-CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 588999999998876654333 4455555321 112233333333222332 2588999988532 222
Q ss_pred -hcCCeeEEEecCHH
Q 024182 148 -KVEGIAFRFLPDPA 161 (271)
Q Consensus 148 -k~~~i~f~fvP~~~ 161 (271)
+..+..|.++.+..
T Consensus 81 ~~~~~~~~~~l~~~~ 95 (142)
T cd02968 81 AKAFGPGWIGLTGTP 95 (142)
T ss_pred HHHhCCCcEEEECCH
Confidence 23457888888754
No 33
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=27.08 E-value=1.9e+02 Score=22.66 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHH
Q 024182 92 NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRL 125 (271)
Q Consensus 92 g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~ 125 (271)
.-+....+. ...+|+-|-+.+||.+|...++.
T Consensus 71 ~~Fh~w~~~--~~~~GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 71 PFFHQWEDD--NCVYGLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred CeEEEEEcC--CcEEEEeeCCHHHHHHHHHHHHh
Confidence 444444443 34699999999999999999875
No 34
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=26.75 E-value=1.6e+02 Score=23.29 Aligned_cols=78 Identities=21% Similarity=0.168 Sum_probs=44.5
Q ss_pred CccEEEEEcCCCCeEEEeCCCCCeeEEEEEecHH---HHHHHHHHHHHhcccccCCceEEEEehhhHHhhh----cCC-e
Q 024182 81 GTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQE---DAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLK----VEG-I 152 (271)
Q Consensus 81 ~VPVF~Vtn~~g~pvli~~~~g~~~v~~~F~s~~---DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~lk----~~~-i 152 (271)
..|=|++.|.+|..+..+.-.| +.+.++|+.-. -....+..+.+...+. .++.|..|+.+....++ .-+ .
T Consensus 5 ~aP~f~l~~~~g~~~~l~~~~g-k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~ 82 (143)
T cd03014 5 KAPDFTLVTSDLSEVSLADFAG-KVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPFAQKRWCGAEGVD 82 (143)
T ss_pred CCCCcEEECCCCcEEeHHHhCC-CeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCC
Confidence 5688999999998776654445 44544554211 1122233333222233 37899999998765442 223 2
Q ss_pred eEEEecCH
Q 024182 153 AFRFLPDP 160 (271)
Q Consensus 153 ~f~fvP~~ 160 (271)
.|.++-|.
T Consensus 83 ~~~~l~D~ 90 (143)
T cd03014 83 NVTTLSDF 90 (143)
T ss_pred CceEeecC
Confidence 57777765
No 35
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=25.65 E-value=87 Score=24.74 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.0
Q ss_pred CeeEEEEEecHHHHHHHHHHHHHh
Q 024182 103 AKSIGLLCFRQEDAEAFLAQVRLR 126 (271)
Q Consensus 103 ~~~v~~~F~s~~DA~a~L~~lk~~ 126 (271)
+..+|+-|-+.+||.+|.+.+...
T Consensus 82 ~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 82 KCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred CeEEEeecCCHHHHHHHHHHHHhc
Confidence 457999999999999999998763
No 36
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=25.39 E-value=56 Score=23.84 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhccccc
Q 024182 113 QEDAEAFLAQVRLRRKELR 131 (271)
Q Consensus 113 ~~DA~a~L~~lk~~~P~~~ 131 (271)
..|+..||+++|..+|++.
T Consensus 4 ~Se~TqFl~~lk~~~Pele 22 (60)
T PF11943_consen 4 QSEITQFLNQLKAKHPELE 22 (60)
T ss_pred cCHHHHHHHHHHHhCCchH
Confidence 4689999999999999854
No 37
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=24.76 E-value=1.9e+02 Score=26.60 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=69.8
Q ss_pred CccEEEEEcCC----------CCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHhcccccCCceEEEEehhhHHhhhc-
Q 024182 81 GTAVYTVSNSS----------NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKV- 149 (271)
Q Consensus 81 ~VPVF~Vtn~~----------g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~lk~- 149 (271)
..||+++.+.. |.|+++.= |. -.++.|+++-++= +++-.+. +.-+....|-+.++.--..
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnF--GS-~TCPpF~~~l~~f---~~l~~~f---~d~adFl~VYI~EAHpsDgW 151 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNF--GS-CTCPPFMAKLDAF---KRLVEDF---SDVADFLIVYIEEAHPSDGW 151 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEc--cc-ccchHHHHHHHHH---HHHHHHh---hhhhheehhhHhhhCcCCCc
Confidence 34555555554 57777743 32 3578888875443 2333322 2345566666666543211
Q ss_pred --CCeeEEEecCHHHH----HHHHHhhhhccCCCCCCceEEe--------------ccceeEeeCCeEE-----eeeeec
Q 024182 150 --EGIAFRFLPDPAQI----RNALELKAADVRTGFDGVPVFQ--------------SELLVVKKKNKRY-----CPVYFQ 204 (271)
Q Consensus 150 --~~i~f~fvP~~~qv----~~A~~L~~~~~~~~f~GVPVF~--------------~~~Lti~~~~~~~-----~PvFFs 204 (271)
.+..+. ||..+.+ .+|+.|++. +.+.||++ -+-|.|-++++-+ -|..|+
T Consensus 152 ~~~~~~~~-i~qh~sledR~~aA~~l~~~-----~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~ 225 (237)
T PF00837_consen 152 AFGNNPYE-IPQHRSLEDRLRAAKLLKEE-----FPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYS 225 (237)
T ss_pred cCCCCcee-ecCCCCHHHHHHHHHHHHhh-----CCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCC
Confidence 111122 4554444 556666643 26889988 2556665666633 499999
Q ss_pred HHHHHHHHHHH
Q 024182 205 KEDIEKELSKV 215 (271)
Q Consensus 205 keDl~~~l~~~ 215 (271)
.+|+...|+++
T Consensus 226 ~~e~r~~L~~~ 236 (237)
T PF00837_consen 226 PEELREWLEKY 236 (237)
T ss_pred HHHHHHHHHhc
Confidence 99999999986
No 38
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=23.11 E-value=28 Score=33.26 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=29.3
Q ss_pred CceEEe---ccceeEeeCCeEEe-----eeeecHHHHHHHHHHHHH
Q 024182 180 GVPVFQ---SELLVVKKKNKRYC-----PVYFQKEDIEKELSKVSR 217 (271)
Q Consensus 180 GVPVF~---~~~Lti~~~~~~~~-----PvFFskeDl~~~l~~~kk 217 (271)
-+|||- ++.+...-||++++ -+||+.+||+...++++.
T Consensus 304 tIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E 349 (355)
T PF11440_consen 304 TIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIE 349 (355)
T ss_dssp SEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHH
T ss_pred eeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHHHH
Confidence 499999 67777666777764 589999999999999976
No 39
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=21.33 E-value=2.4e+02 Score=22.33 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=42.7
Q ss_pred CccEEEEEc--CCCCeEEEeCCCCCeeEEEEEec------HHHHHHHHHHHHHhcccccCCceEEEEehhhH---Hhh-h
Q 024182 81 GTAVYTVSN--SSNEFVLISDPNGAKSIGLLCFR------QEDAEAFLAQVRLRRKELRSAAKVVPITLDQV---YML-K 148 (271)
Q Consensus 81 ~VPVF~Vtn--~~g~pvli~~~~g~~~v~~~F~s------~~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~v---y~l-k 148 (271)
.+|-|.+++ .+|..+-.+.-+|...+..||-+ ..+.- +++++.+...+ +++++..|+.+.- -+. +
T Consensus 5 ~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p-~l~~l~~~~~~--~~v~~v~v~~~~~~~~~~~~~ 81 (146)
T PF08534_consen 5 KAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELP-YLNELQEKYKD--KGVDVVGVSSDDDPPVREFLK 81 (146)
T ss_dssp B--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHH-HHHHHHHHHHT--TTCEEEEEEESSSHHHHHHHH
T ss_pred CCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhh-hHHhhhhhhcc--CceEEEEecccCCHHHHHHHH
Confidence 468888854 99999988775554434433333 44444 77777654322 4567766665422 222 2
Q ss_pred cCCeeEEEecC
Q 024182 149 VEGIAFRFLPD 159 (271)
Q Consensus 149 ~~~i~f~fvP~ 159 (271)
..++.|.++-|
T Consensus 82 ~~~~~~~~~~D 92 (146)
T PF08534_consen 82 KYGINFPVLSD 92 (146)
T ss_dssp HTTTTSEEEEE
T ss_pred hhCCCceEEec
Confidence 35556666665
No 40
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.24 E-value=2.1e+02 Score=20.85 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=36.5
Q ss_pred eeEEEEEecH-----HHHHHHHHHHHHhcccccCCceEEEEehhhHHhh-----hcCCeeEEEecCHHHHHHHHHhhhhc
Q 024182 104 KSIGLLCFRQ-----EDAEAFLAQVRLRRKELRSAAKVVPITLDQVYML-----KVEGIAFRFLPDPAQIRNALELKAAD 173 (271)
Q Consensus 104 ~~v~~~F~s~-----~DA~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~l-----k~~~i~f~fvP~~~qv~~A~~L~~~~ 173 (271)
+.+.+.|.+. ......|.++.++.++ ..+++|..|++++=.+- +..+..+..+|....-.. .+.+.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~- 77 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS--ELLKK- 77 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH--HHHHH-
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH--HHHHH-
Confidence 4455555543 2333344445555554 47899999999843221 334344555554433222 22221
Q ss_pred cCCCCCCceEEe
Q 024182 174 VRTGFDGVPVFQ 185 (271)
Q Consensus 174 ~~~~f~GVPVF~ 185 (271)
=...++|-++
T Consensus 78 --~~i~~iP~~~ 87 (95)
T PF13905_consen 78 --YGINGIPTLV 87 (95)
T ss_dssp --TT-TSSSEEE
T ss_pred --CCCCcCCEEE
Confidence 1234688765
No 41
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.92 E-value=1.5e+02 Score=26.42 Aligned_cols=60 Identities=32% Similarity=0.427 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcccccCCceEEEEehhhHHhhhcCCeeEEEecCHHHHHHHHHhhhhcc-------------CCCCCCce
Q 024182 116 AEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALELKAADV-------------RTGFDGVP 182 (271)
Q Consensus 116 A~a~L~~lk~~~P~~~~~~kV~~vsL~~vy~lk~~~i~f~fvP~~~qv~~A~~L~~~~~-------------~~~f~GVP 182 (271)
.+.+++++++.. +++.+..|.+.- |..|...|++.|.+.|+.+..+.. -+.+.|-|
T Consensus 170 ~~~i~~~i~~~r----~~~D~vIv~~Hw-------G~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~~~~ 238 (250)
T PF09587_consen 170 IERIKEDIREAR----KKADVVIVSLHW-------GIEYENYPTPEQRELARALIDAGADIIIGHHPHVIQPVEIYKGKP 238 (250)
T ss_pred HHHHHHHHHHHh----cCCCEEEEEecc-------CCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEECCEE
Confidence 366666666543 234455555443 456778899999999999987431 24466788
Q ss_pred EEec
Q 024182 183 VFQS 186 (271)
Q Consensus 183 VF~~ 186 (271)
|||+
T Consensus 239 I~YS 242 (250)
T PF09587_consen 239 IFYS 242 (250)
T ss_pred EEEe
Confidence 8884
No 42
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=20.34 E-value=1.5e+02 Score=30.35 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCeEEEeCCCCCeeEEEEEecHHHHHHHHHHHHHh
Q 024182 92 NEFVLISDPNGAKSIGLLCFRQEDAEAFLAQVRLR 126 (271)
Q Consensus 92 g~pvli~~~~g~~~v~~~F~s~~DA~a~L~~lk~~ 126 (271)
.-++.+.++++ ++|+-|++.+||+.|.+.+...
T Consensus 106 ~ffhtFegddc--~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 106 TFFHTFEGDDC--QAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred cceeeeccccc--eeeecccCHHHHHHHHHHHHHH
Confidence 44555554443 7999999999999999987753
Done!