BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024183
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P44426|BIOA_HAEIN Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=bioA PE=3 SV=1
Length = 430
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 75 SQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLE 134
S W + + Y + ++ ++ + K + I+ G + E+ +V LP GLD+
Sbjct: 52 SSWWAALHGYNHPRLNAAAQNQLAKMSHIMFGGFTHDPAVELAQLLVQILPNGLDKIFFA 111
Query: 135 EISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDPEVG 194
+ + V+++M ++ K G V + S HG + DP G
Sbjct: 112 DSGSVAVEVAMKMAIQYQHAK--GEVQRQKFATIRSGYHG------DTWNAMSVCDPTTG 163
Query: 195 KRFILHYTYGCDYNL 209
+ H++ Y L
Sbjct: 164 MHHLFHHSLPVQYFL 178
>sp|P0AE55|BCP_SHIFL Putative peroxiredoxin bcp OS=Shigella flexneri GN=bcp PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 79 SRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPL------PEGLDRYL 132
R++ Y+Y K M + G DN MDE+ VD L PE L R+
Sbjct: 31 QRVLVYFYPKA-------MTPGCTVQACGLRDN-MDELKKAGVDVLGISTDKPEKLSRFA 82
Query: 133 LEEISPTWLNVSLRMKDDHETDKQFG-WVLEMYAYAVASALHGVRHILRKDFMLQPPWD 190
+E+ LN +L +DH+ +QFG W + + +H + ++ D ++ +D
Sbjct: 83 EKEL----LNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFD 137
>sp|P0AE52|BCP_ECOLI Putative peroxiredoxin bcp OS=Escherichia coli (strain K12) GN=bcp
PE=1 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 79 SRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPL------PEGLDRYL 132
R++ Y+Y K M + G DN MDE+ VD L PE L R+
Sbjct: 31 QRVLVYFYPKA-------MTPGCTVQACGLRDN-MDELKKAGVDVLGISTDKPEKLSRFA 82
Query: 133 LEEISPTWLNVSLRMKDDHETDKQFG-WVLEMYAYAVASALHGVRHILRKDFMLQPPWD 190
+E+ LN +L +DH+ +QFG W + + +H + ++ D ++ +D
Sbjct: 83 EKEL----LNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFD 137
>sp|P0AE53|BCP_ECOL6 Putative peroxiredoxin bcp OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=bcp PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 79 SRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPL------PEGLDRYL 132
R++ Y+Y K M + G DN MDE+ VD L PE L R+
Sbjct: 31 QRVLVYFYPKA-------MTPGCTVQACGLRDN-MDELKKAGVDVLGISTDKPEKLSRFA 82
Query: 133 LEEISPTWLNVSLRMKDDHETDKQFG-WVLEMYAYAVASALHGVRHILRKDFMLQPPWD 190
+E+ LN +L +DH+ +QFG W + + +H + ++ D ++ +D
Sbjct: 83 EKEL----LNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFD 137
>sp|P0AE54|BCP_ECO57 Putative peroxiredoxin bcp OS=Escherichia coli O157:H7 GN=bcp PE=3
SV=1
Length = 156
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 79 SRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPL------PEGLDRYL 132
R++ Y+Y K M + G DN MDE+ VD L PE L R+
Sbjct: 31 QRVLVYFYPKA-------MTPGCTVQACGLRDN-MDELKKAGVDVLGISTDKPEKLSRFA 82
Query: 133 LEEISPTWLNVSLRMKDDHETDKQFG-WVLEMYAYAVASALHGVRHILRKDFMLQPPWD 190
+E+ LN +L +DH+ +QFG W + + +H + ++ D ++ +D
Sbjct: 83 EKEL----LNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFD 137
>sp|Q6LMY0|CLPB_PHOPR Chaperone protein ClpB OS=Photobacterium profundum GN=clpB PE=3
SV=2
Length = 857
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 25/129 (19%)
Query: 108 KADNLMDEIPSFV---VDPLPEGLDRYLLEEISPTWLNVSLRMKDDHETDKQFGWV---- 160
KA +L+DE S + +D PE LDR I +L + D + K+ +
Sbjct: 389 KAIDLIDEAASSIRMQIDSKPESLDRLERRIIQLKIEQQALSKESDAASQKRLNDICEEL 448
Query: 161 ---------LEMYAYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKG 211
LE A +AL G +HI K + Q + EV +R D N
Sbjct: 449 DVKEREYAELEEVWNAEKAALSGTQHI--KSELEQARMNMEVARR-------AGDLNRMS 499
Query: 212 ELTYGKIGE 220
EL YGKI E
Sbjct: 500 ELQYGKIPE 508
>sp|Q8T116|HCYX_SCUCO Hemocyanin subunit X OS=Scutigera coleoptrata GN=HCX PE=2 SV=1
Length = 685
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 22 FFATYNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQSRI 81
F+ + VI + D GK G GN G+ + VA +A D ++ QW +
Sbjct: 362 FYGNIHCYAHVIAARVTDPDGKY----------GQGN-GVMYDVATSARDPLFYQWHKFL 410
Query: 82 MYYWYKKVKDMPRSDM 97
+++Y+ + +P + +
Sbjct: 411 DHFFYEHLTKLPTNHL 426
>sp|Q47162|FCT_DICD3 Ferrichrysobactin receptor OS=Dickeya dadantii (strain 3937) GN=fct
PE=3 SV=2
Length = 735
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 74 YSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEG------ 127
Y+Q + + Y Y K D P +D T IL + + +EI F +D +
Sbjct: 336 YTQLREKYKYLVYTKNADAPATD----TTILRRPQKEE--NEISEFAIDNQLKATFATGS 389
Query: 128 LDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASAL 172
++ +L + WL + +M D D F W Y +V ++
Sbjct: 390 VNHTVLSGLDYKWLTLEKKMWLDRNNDYSFNWANPTYNVSVNDSM 434
>sp|Q89MU0|RSMA_BRAJA Ribosomal RNA small subunit methyltransferase A OS=Bradyrhizobium
japonicum (strain USDA 110) GN=rsmA PE=3 SV=1
Length = 284
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 22/77 (28%)
Query: 187 PPW--------DPEVGKRFILHYTYGCDYNLKGELTYGKIG---EWRFDKRSFLNGPPPK 235
PPW EVG+R + + E YG++G WR + + + P
Sbjct: 143 PPWYDMMVLMFQREVGERIVAR---------EDEEAYGRLGVLANWRCETKILFDIAP-- 191
Query: 236 NLSLPPPGVPESVVRLV 252
+ +PPP V SVVRLV
Sbjct: 192 SAFVPPPKVTSSVVRLV 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,256,440
Number of Sequences: 539616
Number of extensions: 4827825
Number of successful extensions: 12296
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12294
Number of HSP's gapped (non-prelim): 11
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)