Query 024183
Match_columns 271
No_of_seqs 99 out of 120
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 02:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01223 Pmev_kin_anim phosph 63.2 2.9 6.3E-05 37.7 0.6 78 62-160 48-134 (182)
2 PF04244 DPRP: Deoxyribodipyri 43.5 26 0.00056 32.1 3.3 56 204-264 159-217 (224)
3 PRK05089 cytochrome C oxidase 31.8 1.3E+02 0.0029 27.3 5.9 60 13-79 19-81 (188)
4 PTZ00128 cytochrome c oxidase 20.8 2.7E+02 0.0058 26.2 6.0 23 56-78 102-124 (232)
5 PF06204 CBM_X: Putative carbo 18.0 33 0.00071 26.0 -0.5 23 60-82 33-58 (66)
6 PF07172 GRP: Glycine rich pro 18.0 1.2E+02 0.0025 24.6 2.6 10 11-20 5-14 (95)
7 COG0203 RplQ Ribosomal protein 17.5 76 0.0016 27.1 1.4 28 81-108 75-102 (116)
8 PHA00665 major capsid protein 15.8 1.5E+02 0.0033 29.3 3.2 58 196-269 214-272 (329)
9 PF08636 Pkr1: ER protein Pkr1 14.3 1.3E+02 0.0028 23.7 1.9 23 8-30 26-48 (75)
10 COG3934 Endo-beta-mannanase [C 13.5 91 0.002 32.8 1.1 37 131-167 127-170 (587)
No 1
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=63.18 E-value=2.9 Score=37.72 Aligned_cols=78 Identities=23% Similarity=0.451 Sum_probs=54.1
Q ss_pred ceEEEEeecCcccchhH-HHHHHHHHHHhhcCCCCCCCcceEEeccCCCCccccCCCceeeCCCCCCCCHHHHhhhch-h
Q 024183 62 RFHVALTATDAIYSQWQ-SRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRYLLEEISP-T 139 (271)
Q Consensus 62 ~~Htv~Ta~~~~Y~~WQ-~rimy~sykk~~~~pgs~mG~FTRILH~g~~D~LMdeIPT~vvdPL~~~~D~dDL~~iAP-~ 139 (271)
.++-+++ .++|-. | -+-|+.|+..++.. ++|.|.|..+. ..| .|.+++ +|+|+-+| .
T Consensus 48 d~~~Ll~--d~~YKE-~~R~~mi~w~e~~r~~---dp~~F~r~~~~-~~~-----~~v~iI---------sD~Rr~~dv~ 106 (182)
T TIGR01223 48 NFQRLLD--TSTYKE-AFRKDMIRWGEEKRQA---DPGFFCRKIVE-GIS-----QPIWLV---------SDTRRVSDIQ 106 (182)
T ss_pred hHHHhcC--Ccccch-hhhHHHHHHHHHHHhh---CccHHHHHHHh-ccC-----CCEEEE---------eCCCcccHHH
Confidence 3444443 358888 8 78899998877743 67999998885 333 266777 45555555 3
Q ss_pred HHHH-------HHhhccChhhhhccchH
Q 024183 140 WLNV-------SLRMKDDHETDKQFGWV 160 (271)
Q Consensus 140 W~~~-------t~~vr~D~~a~~~~GWV 160 (271)
|+.- +.+|++++++.+++||+
T Consensus 107 ~f~~~~g~~~~~VRV~AseetR~~Rgw~ 134 (182)
T TIGR01223 107 WFREAYGAVTQTVRVVALEQSRQQRGWV 134 (182)
T ss_pred HHHHHcCCceEEEEEecCHHHHHHHHHh
Confidence 4443 47899999999999976
No 2
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=43.51 E-value=26 Score=32.07 Aligned_cols=56 Identities=25% Similarity=0.614 Sum_probs=24.3
Q ss_pred ccccccCCccccCccceeeeeccCCCCCCCCCCCCCCCCCC--ChHHH-HHHHHHHHHhhcCCC
Q 024183 204 GCDYNLKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPPPGV--PESVV-RLVKMVNEATANIPG 264 (271)
Q Consensus 204 G~~y~~~G~~t~Gkvg~W~FDKR~y~~~~pp~nl~~PP~~v--~e~~v-~lv~~vNeA~~~lP~ 264 (271)
|...+.+|+-.= |.|+||.-. .+++|++.+.|+|.- +++.+ ..++.|++.-.+-|.
T Consensus 159 ~ILmd~~g~P~G---GkWnfD~eN--Rk~~p~~~~~P~~~~~~~d~it~~v~~~V~~~f~~~~G 217 (224)
T PF04244_consen 159 GILMDEDGKPVG---GKWNFDAEN--RKKLPKGIPIPEPPRFEPDAITQEVIELVEKHFPDHPG 217 (224)
T ss_dssp TTTE-ETTEEGG---GSS--GGGS---------TTS---------HHHHHHHHHHHHH-TTSSS
T ss_pred CccccCCCCcCC---CcCCCChhh--ccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHCCCCCC
Confidence 666666666432 459999743 234455555554433 34444 588899888766653
No 3
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=31.76 E-value=1.3e+02 Score=27.33 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHH---HHHhhhhhhcccccccCCCCccccCCccCCCCCCCCceEEEEeecCcccchhHH
Q 024183 13 LLVLLALGFFFAT---YNLLTMVIQNKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQS 79 (271)
Q Consensus 13 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Htv~Ta~~~~Y~~WQ~ 79 (271)
++++.++||.||. |+++--+--.. |..... -.......+..|.+.+=|.|+-++-+.|+=
T Consensus 19 ~~~~~Mfgf~fA~VPLY~~fC~~TG~~-----G~t~~~--~~~~~~~~~~~R~I~V~F~a~~~~~lpW~F 81 (188)
T PRK05089 19 LVVVGMFGFGFALVPLYDVFCEVTGIN-----GTTQAA--RVEAASQVDLSRTITVEFDANVNGGLPWEF 81 (188)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhCCC-----ceeccc--cccccCcccCCcEEEEEEeccCCCCCCceE
Confidence 3344566777775 88777653221 111100 112223556789999999999999999983
No 4
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=20.85 E-value=2.7e+02 Score=26.24 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=20.0
Q ss_pred CCCCCCceEEEEeecCcccchhH
Q 024183 56 GGNSGMRFHVALTATDAIYSQWQ 78 (271)
Q Consensus 56 ~~~~~~~~Htv~Ta~~~~Y~~WQ 78 (271)
.....+.|.|-|.|+-++-+.|+
T Consensus 102 ~~~~~R~I~V~F~a~v~~~lpW~ 124 (232)
T PTZ00128 102 YPVPKRLIKIRFLADTGSTMPWE 124 (232)
T ss_pred cccCceEEEEEEeccCCCCCCce
Confidence 44578999999999999999998
No 5
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=18.02 E-value=33 Score=26.00 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=17.6
Q ss_pred CCceEEEEeecCcccc---hhHHHHH
Q 024183 60 GMRFHVALTATDAIYS---QWQSRIM 82 (271)
Q Consensus 60 ~~~~Htv~Ta~~~~Y~---~WQ~rim 82 (271)
...|++++|.+|+.|+ +|+...+
T Consensus 33 Ng~y~~mvt~~G~GySw~~~~~~~~l 58 (66)
T PF06204_consen 33 NGSYGVMVTNSGSGYSWAKNSRDNRL 58 (66)
T ss_dssp SSSEEEEEETTSBEEEEES-TTTSEE
T ss_pred CCcEEEEEcCCCceeecccccCcCcc
Confidence 4469999999999999 8875433
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=18.01 E-value=1.2e+02 Score=24.59 Aligned_cols=10 Identities=50% Similarity=0.693 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 024183 11 SFLLVLLALG 20 (271)
Q Consensus 11 ~~~~~~~~~~ 20 (271)
.+|||.|.|+
T Consensus 5 ~~llL~l~LA 14 (95)
T PF07172_consen 5 AFLLLGLLLA 14 (95)
T ss_pred HHHHHHHHHH
Confidence 3444434333
No 7
>COG0203 RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=17.46 E-value=76 Score=27.08 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcCCCCCCCcceEEeccCC
Q 024183 81 IMYYWYKKVKDMPRSDMGKFTRILHSGK 108 (271)
Q Consensus 81 imy~sykk~~~~pgs~mG~FTRILH~g~ 108 (271)
++-.-|...+..=....||.||||.+|-
T Consensus 75 ~v~kLF~~iapry~~R~GGYtRIlK~g~ 102 (116)
T COG0203 75 AVKKLFDEIAPRYAERNGGYTRILKLGF 102 (116)
T ss_pred HHHHHHHHhChhhcCCCCCeeEEEecCC
Confidence 4444555554223468999999999964
No 8
>PHA00665 major capsid protein
Probab=15.78 E-value=1.5e+02 Score=29.30 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=36.5
Q ss_pred ceEEEeecccccccCCccccCccceeeeeccCCCCCCCCCCCCCCCCC-CChHHHHHHHHHHHHhhcCCCCCCCC
Q 024183 196 RFILHYTYGCDYNLKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPPPG-VPESVVRLVKMVNEATANIPGWDTVT 269 (271)
Q Consensus 196 ~~ilHYTyG~~y~~~G~~t~Gkvg~W~FDKR~y~~~~pp~nl~~PP~~-v~e~~v~lv~~vNeA~~~lP~w~~~~ 269 (271)
++.=||.|-+-. .+.+||+-.|= +|++..--. -..+-.+|++++.+|...||+...+.
T Consensus 214 ~~~~~y~w~~GL---------svrdwr~vvRI-------aNIdvs~l~k~~~~g~~l~~lm~~A~~rip~~~~gr 272 (329)
T PHA00665 214 GYRTHYKWDIGL---------TLRDWRYVVRI-------ANIDVSELTKNASAGADLIKLMVQAAERIPNLGMGR 272 (329)
T ss_pred EEEeEEecccCc---------eeccccceeEE-------eccchhhccccccccchHHHHHHHHHHhCccccCCc
Confidence 466777775543 35678776663 555533221 11223459999999999999976554
No 9
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=14.26 E-value=1.3e+02 Score=23.75 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh
Q 024183 8 GVSSFLLVLLALGFFFATYNLLT 30 (271)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ 30 (271)
.++...|++.-++..|+|||+=.
T Consensus 26 n~sF~~L~~~l~~Ll~~t~niHf 48 (75)
T PF08636_consen 26 NVSFAALFLVLLALLFLTYNIHF 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHccCHHH
Confidence 34566777777788899998633
No 10
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=13.48 E-value=91 Score=32.76 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=24.5
Q ss_pred HHHhh---hchhHHHH--HHh--hccChhhhhccchHHHHHHHH
Q 024183 131 YLLEE---ISPTWLNV--SLR--MKDDHETDKQFGWVLEMYAYA 167 (271)
Q Consensus 131 dDL~~---iAP~W~~~--t~~--vr~D~~a~~~~GWV~EMYaYs 167 (271)
+||.+ .-|+=+.. +.+ +|.+.-....+.|++|||+|-
T Consensus 127 edlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yi 170 (587)
T COG3934 127 EDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYI 170 (587)
T ss_pred HHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHh
Confidence 66665 44443332 223 566666667889999999995
Done!