Query 024183
Match_columns 271
No_of_seqs 99 out of 120
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 03:48:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2khu_A Immunoglobulin G-bindin 18.0 95 0.0032 25.0 3.3 37 219-255 41-88 (108)
2 2l9a_X LAK160-P12; cationic, p 16.7 39 0.0013 20.8 0.6 17 133-149 7-23 (26)
3 2lk9_A Bone marrow stromal ant 15.7 63 0.0022 21.4 1.4 21 7-27 8-28 (35)
4 2zjr_K 50S ribosomal protein L 12.4 79 0.0027 25.5 1.4 23 86-108 80-102 (116)
5 3r8s_N 50S ribosomal protein L 12.4 65 0.0022 26.2 0.9 15 94-108 88-102 (120)
6 1r4g_A RNA polymerase alpha su 12.0 1.1E+02 0.0038 21.8 1.9 19 245-263 34-52 (53)
7 3zxs_A Cryptochrome B, rscryb; 11.9 2.9E+02 0.0098 27.3 5.5 38 219-258 184-224 (522)
8 1gd8_A 50S ribosomal protein L 11.3 75 0.0026 25.7 1.0 14 94-107 88-101 (118)
9 2cqm_A Ribosomal protein L17 i 10.1 84 0.0029 25.6 0.9 15 95-109 79-93 (122)
10 2pyq_A Uncharacterized protein 10.1 51 0.0017 26.8 -0.4 38 128-165 51-88 (114)
No 1
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=18.04 E-value=95 Score=24.98 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=11.8
Q ss_pred ceeeeeccCCCCCC---CCCCCCCCCCC-------CChHHHH-HHHHH
Q 024183 219 GEWRFDKRSFLNGP---PPKNLSLPPPG-------VPESVVR-LVKMV 255 (271)
Q Consensus 219 g~W~FDKR~y~~~~---pp~nl~~PP~~-------v~e~~v~-lv~~v 255 (271)
|+|++|...++-.. |...+.+|+.- +|++|.+ |+.--
T Consensus 41 gew~yd~atktftvtE~~dE~i~~Ps~VDP~VFyeLP~eVQ~ELla~W 88 (108)
T 2khu_A 41 GEWTYDDATKTFTVTEGSDEKITFPSDIDPQVFYELPEAVQKELLAEW 88 (108)
T ss_dssp --------------------CCCCCTTCCHHHHTTSCHHHHHHHHHHH
T ss_pred ceEeecCcceeEEeeccccccCCCCCCCCHHHHHHccHHHHHHHHHHH
Confidence 68999999888753 45567777763 5556664 55433
No 2
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=16.74 E-value=39 Score=20.75 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=13.7
Q ss_pred HhhhchhHHHHHHhhcc
Q 024183 133 LEEISPTWLNVSLRMKD 149 (271)
Q Consensus 133 L~~iAP~W~~~t~~vr~ 149 (271)
|.++||+|-.+..+.+.
T Consensus 7 laklaplwkalalklkk 23 (26)
T 2l9a_X 7 LAKLAPLWKALALKLKK 23 (26)
T ss_dssp SSSSCTHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 56899999988877664
No 3
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=15.75 E-value=63 Score=21.36 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=14.7
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 024183 7 LGVSSFLLVLLALGFFFATYN 27 (271)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (271)
|-+-..+|++++||+.++.|-
T Consensus 8 g~Gvl~LLviV~LgV~LI~f~ 28 (35)
T 2lk9_A 8 GIGILVLLIIVILGVPLIIFT 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHhcchheEEe
Confidence 445566777778888877764
No 4
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=12.43 E-value=79 Score=25.55 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=15.6
Q ss_pred HHHhhcCCCCCCCcceEEeccCC
Q 024183 86 YKKVKDMPRSDMGKFTRILHSGK 108 (271)
Q Consensus 86 ykk~~~~pgs~mG~FTRILH~g~ 108 (271)
|......=.+..||+|||+-+|.
T Consensus 80 F~~iapry~~R~GGYTRI~K~~~ 102 (116)
T 2zjr_K 80 MDEVAPKYAERPGGYTRILRVGT 102 (116)
T ss_dssp HHTHHHHTTTSCSCCCEEEECCC
T ss_pred HHHHHHHhCCCCCCeeEEEECCC
Confidence 44443223468999999999864
No 5
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=12.38 E-value=65 Score=26.22 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=12.4
Q ss_pred CCCCCcceEEeccCC
Q 024183 94 RSDMGKFTRILHSGK 108 (271)
Q Consensus 94 gs~mG~FTRILH~g~ 108 (271)
.+..||+|||+.+|.
T Consensus 88 ~~R~GGYTRI~K~~~ 102 (120)
T 3r8s_N 88 ASRAGGYTRILKCGF 102 (120)
T ss_dssp TTCCSCCEEEEEEEE
T ss_pred cCCCCCeEEEEECCC
Confidence 468899999999853
No 6
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=11.98 E-value=1.1e+02 Score=21.76 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHHhhcCC
Q 024183 245 PESVVRLVKMVNEATANIP 263 (271)
Q Consensus 245 ~e~~v~lv~~vNeA~~~lP 263 (271)
.|+|-.+.+|+||-+..|-
T Consensus 34 dqEV~~~Memf~EDi~slt 52 (53)
T 1r4g_A 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 4678889999999988764
No 7
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=11.87 E-value=2.9e+02 Score=27.28 Aligned_cols=38 Identities=29% Similarity=0.651 Sum_probs=19.9
Q ss_pred ceeeeeccCCCCCCCCCCCCCCCC--CCChHHH-HHHHHHHHH
Q 024183 219 GEWRFDKRSFLNGPPPKNLSLPPP--GVPESVV-RLVKMVNEA 258 (271)
Q Consensus 219 g~W~FDKR~y~~~~pp~nl~~PP~--~v~e~~v-~lv~~vNeA 258 (271)
|.|.||+-. ..++|+.++.|+| ..+++++ ..++.|.+.
T Consensus 184 G~WnfD~~N--Rk~~p~~~~~p~~~~~~~d~~~~~v~~~v~~~ 224 (522)
T 3zxs_A 184 GKWNFDTEN--RKPAAPDLLRPRPLRFEPDAEVRAVLDLVEAR 224 (522)
T ss_dssp GSSCCGGGS--CCCCCCCTTCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CccCccccc--cccCCCCCCCCCCCCCCCchhHHHHHHHHHHh
Confidence 469999743 1234444444433 3344444 466666554
No 8
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=11.28 E-value=75 Score=25.73 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=12.3
Q ss_pred CCCCCcceEEeccC
Q 024183 94 RSDMGKFTRILHSG 107 (271)
Q Consensus 94 gs~mG~FTRILH~g 107 (271)
.+..||+|||+-+|
T Consensus 88 ~~R~GGYTRI~K~~ 101 (118)
T 1gd8_A 88 RDRQGGYTRVLKLA 101 (118)
T ss_dssp SSCCSCCEEEEEEE
T ss_pred CCCCCCeEEEEECC
Confidence 46899999999987
No 9
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=10.12 E-value=84 Score=25.55 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.4
Q ss_pred CCCCcceEEeccCCC
Q 024183 95 SDMGKFTRILHSGKA 109 (271)
Q Consensus 95 s~mG~FTRILH~g~~ 109 (271)
+..||+|||+.+|.-
T Consensus 79 ~R~GGYTRI~K~~~R 93 (122)
T 2cqm_A 79 DQTGGYTRMLQIPNR 93 (122)
T ss_dssp HSCSCCEEEEEECCC
T ss_pred CCCCCeeEEEECCCC
Confidence 578999999998653
No 10
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=10.09 E-value=51 Score=26.83 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=34.4
Q ss_pred CCHHHHhhhchhHHHHHHhhccChhhhhccchHHHHHH
Q 024183 128 LDRYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYA 165 (271)
Q Consensus 128 ~D~dDL~~iAP~W~~~t~~vr~D~~a~~~~GWV~EMYa 165 (271)
-|+++|++|---|+-.-+-+.++++++.+-.=|.||||
T Consensus 51 SD~~ELerVk~nfl~KKLGl~d~~~ld~aI~~V~e~mg 88 (114)
T 2pyq_A 51 SDTAELETIKKNFLMKKLGLADSESLMGGIQSVIETYG 88 (114)
T ss_dssp TCHHHHHHHHHHTTTTTSCCCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhHHHHHcCCCCcHhHHHHHHHHHHHHh
Confidence 36699999999999999999999999999888999985
Done!