Query 024183
Match_columns 271
No_of_seqs 99 out of 120
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 03:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024183.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024183hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3etja1 b.84.2.1 (A:277-355) N 16.1 2.1 0.00015 30.7 -4.7 28 83-113 26-53 (79)
2 d1k1ga_ d.51.1.1 (A:) RNA spli 15.4 1E+02 0.0076 22.6 4.9 16 56-71 63-78 (122)
3 d1rrpb_ b.55.1.3 (B:) Nuclear 14.5 22 0.0016 26.3 0.6 32 44-75 2-33 (134)
4 d2cpda1 d.58.7.1 (A:223-308) A 13.7 62 0.0045 21.1 2.9 28 109-136 1-28 (86)
5 d1gd8a_ d.188.1.1 (A:) Prokary 12.2 32 0.0023 25.4 1.0 14 94-107 75-88 (105)
6 d1r4ga_ a.8.5.1 (A:) RNA polym 12.1 51 0.0037 21.8 1.9 19 245-263 34-52 (53)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 10.0 89 0.0065 19.2 2.4 14 13-26 21-34 (37)
8 d1riea_ b.33.1.1 (A:) ISP subu 8.4 57 0.0042 24.5 1.2 15 231-245 105-119 (127)
9 d2cqma1 d.188.1.1 (A:28-136) P 8.1 1.1E+02 0.0083 22.2 2.8 14 95-108 72-85 (109)
10 d2zjrk1 d.188.1.1 (K:3-115) Pr 7.3 80 0.0058 23.3 1.6 15 94-108 86-100 (113)
No 1
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}
Probab=16.09 E-value=2.1 Score=30.70 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCCCCCCcceEEeccCCCCccc
Q 024183 83 YYWYKKVKDMPRSDMGKFTRILHSGKADNLM 113 (271)
Q Consensus 83 y~sykk~~~~pgs~mG~FTRILH~g~~D~LM 113 (271)
+|+|-| ..+||-.||++| |+.. +.|+|.
T Consensus 26 ~H~YGK-~~RpgRKmGHit-l~~~-~~~~l~ 53 (79)
T d3etja1 26 LHWYDK-EVRPGRKVGHLN-LTDS-DTSRLT 53 (79)
T ss_dssp EEECCC-CCCTTCEEEEEE-EECS-CHHHHH
T ss_pred EEecCC-CCCCCCcEEEEE-eecC-CHHHHH
Confidence 566777 367999999999 5544 444443
No 2
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.44 E-value=1e+02 Score=22.64 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=12.2
Q ss_pred CCCCCCceEEEEeecC
Q 024183 56 GGNSGMRFHVALTATD 71 (271)
Q Consensus 56 ~~~~~~~~Htv~Ta~~ 71 (271)
.......+|+.+++++
T Consensus 63 ~~~~~epLHv~I~a~~ 78 (122)
T d1k1ga_ 63 LPGEDEPLHALVTANT 78 (122)
T ss_dssp SCCSSCCEEEEEEESS
T ss_pred CCCCCCCceEEEecCC
Confidence 3345668999999987
No 3
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.53 E-value=22 Score=26.31 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=22.6
Q ss_pred CCccccCCccCCCCCCCCceEEEEeecCcccc
Q 024183 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS 75 (271)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~Htv~Ta~~~~Y~ 75 (271)
+.|++++|....-......=.++|+.-|..|.
T Consensus 2 f~p~~~l~~~v~~~tgEE~E~~if~~r~KL~~ 33 (134)
T d1rrpb_ 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFR 33 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEE
T ss_pred ccCcccCCCccceecCccCcEEEEEEeeEEEE
Confidence 57999999876644444445788888887764
No 4
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.66 E-value=62 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.2
Q ss_pred CCccccCCCceeeCCCCCCCCHHHHhhh
Q 024183 109 ADNLMDEIPSFVVDPLPEGLDRYLLEEI 136 (271)
Q Consensus 109 ~D~LMdeIPT~vvdPL~~~~D~dDL~~i 136 (271)
+++.|..+=|..|-.||.+++.+||+++
T Consensus 1 d~d~~~~~k~l~V~nLp~~~te~~l~~~ 28 (86)
T d2cpda1 1 DEDTMSSVKILYVRNLMLSTSEEMIEKE 28 (86)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHH
T ss_pred CcccccCCCEEEEcCCCCCCCHHHHHHh
Confidence 4566777778889999999999999876
No 5
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}
Probab=12.20 E-value=32 Score=25.39 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.5
Q ss_pred CCCCCcceEEeccC
Q 024183 94 RSDMGKFTRILHSG 107 (271)
Q Consensus 94 gs~mG~FTRILH~g 107 (271)
.+..||+|||+..|
T Consensus 75 ~~R~GGYTRI~kl~ 88 (105)
T d1gd8a_ 75 RDRQGGYTRVLKLA 88 (105)
T ss_dssp SSCCSCCEEEEEEE
T ss_pred hcCCCCeEEEEecC
Confidence 46899999999863
No 6
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=12.14 E-value=51 Score=21.80 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHhhcCC
Q 024183 245 PESVVRLVKMVNEATANIP 263 (271)
Q Consensus 245 ~e~~v~lv~~vNeA~~~lP 263 (271)
.|+|-.+.+|+||-+.+|-
T Consensus 34 d~EV~evMdlf~EDi~slt 52 (53)
T d1r4ga_ 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 4677789999999998764
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.02 E-value=89 Score=19.20 Aligned_cols=14 Identities=43% Similarity=1.013 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 024183 13 LLVLLALGFFFATY 26 (271)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (271)
+|++.++++.|..|
T Consensus 21 lLlifvl~vLFssY 34 (37)
T d2axtl1 21 LLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555667777776
No 8
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.40 E-value=57 Score=24.46 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCC
Q 024183 231 GPPPKNLSLPPPGVP 245 (271)
Q Consensus 231 ~~pp~nl~~PP~~v~ 245 (271)
+|.|+||+.||=.+.
T Consensus 105 GPAp~~L~~p~~~~~ 119 (127)
T d1riea_ 105 GPAPLNLEVPSYEFT 119 (127)
T ss_dssp SSCCSCCCCCCEEES
T ss_pred CCCCCCCCCCcEEEe
Confidence 488999998875543
No 9
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.12 E-value=1.1e+02 Score=22.20 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.5
Q ss_pred CCCCcceEEeccCC
Q 024183 95 SDMGKFTRILHSGK 108 (271)
Q Consensus 95 s~mG~FTRILH~g~ 108 (271)
+..||+|||+-.+.
T Consensus 72 ~R~GGYTRI~kl~~ 85 (109)
T d2cqma1 72 DQTGGYTRMLQIPN 85 (109)
T ss_dssp HSCSCCEEEEEECC
T ss_pred cCCCCeEEEEecCC
Confidence 57999999998754
No 10
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.34 E-value=80 Score=23.32 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.4
Q ss_pred CCCCCcceEEeccCC
Q 024183 94 RSDMGKFTRILHSGK 108 (271)
Q Consensus 94 gs~mG~FTRILH~g~ 108 (271)
.+..||+|||+-.|.
T Consensus 86 ~~R~GGYTRI~kl~~ 100 (113)
T d2zjrk1 86 AERPGGYTRILRVGT 100 (113)
T ss_dssp TTSCSCCCEEEECCC
T ss_pred cCCCCCeEEEEECCC
Confidence 468999999998764
Done!