BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024185
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N++ + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAA 301
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ +YD G F+ + G + D+ +S+D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYD-GKFEK-TISGHKLGISDVAWSSDS 80
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 209 INT 211
+ T
Sbjct: 139 VKT 141
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAA 301
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 80
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 209 INT 211
+ T
Sbjct: 139 VKT 141
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 154 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 210
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 271 VQKLQGHTDVVISTACHPTENIIASAA 297
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 70
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 76
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 77 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 209 INT 211
+ T
Sbjct: 135 VKT 137
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAA 304
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+V F G A + IK++ + YD G F+ + G + D+ +S+D ++
Sbjct: 34 SVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDSNLLVSA 89
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211
+ + + + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 90 SDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 151 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 207
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 268 VQKLQGHTDVVISTACHPTENIIASAA 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 67
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 73
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 74 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 209 INT 211
+ T
Sbjct: 132 VKT 134
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 172 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 228
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 289 VQKLQGHTDVVISTACHPTENIIASAA 315
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 88
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 94
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 95 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 209 INT 211
+ T
Sbjct: 153 VKT 155
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAA 301
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 80
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 209 INT 211
+ T
Sbjct: 139 VKT 141
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAA 301
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 80
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 209 INT 211
+ T
Sbjct: 139 VKT 141
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 272 VQKLQGHTDVVISTACHPTENIIASAA 298
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 71
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 77
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 78 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 209 INT 211
+ T
Sbjct: 136 VKT 138
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 272 VQKLQGHTDVVISTACHPTENIIASAA 298
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 71
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 77
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 78 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 209 INT 211
+ T
Sbjct: 136 VKT 138
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAA 304
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+V F G A + IK++ + YD G F+ + G + D+ +S+D ++
Sbjct: 34 SVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDSNLLVSA 89
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211
+ + + + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 90 SDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAA 301
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 74
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 80
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 209 INT 211
+ T
Sbjct: 139 VKT 141
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 156 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 212
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 273 VQKLQGHTDVVISTACHPTENIIASAA 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 72
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 78
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 79 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 209 INT 211
+ T
Sbjct: 137 VKT 139
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 160 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 216
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 276
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 277 VQKLQGHTDVVISTACHPTENIIASAA 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 76
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 82
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 83 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 209 INT 211
+ T
Sbjct: 141 VKT 143
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAA 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 77
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 89 RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148
+ +V F G A + IK++ + YD G F+ + G + D+ +S+D
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDS 83
Query: 149 KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
++ + + + + D G +C +L+ N F P +VSGS D ++ W+
Sbjct: 84 NLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 209 INT 211
+ T
Sbjct: 142 VKT 144
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 177 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 293
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 294 VQKLQGHTDVVISTACHPTENIIASAA 320
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 93
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+V F G A + IK++ + YD G F+ + G + D+ +S+D ++
Sbjct: 50 SVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDSNLLVSA 105
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211
+ + + + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 106 SDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
V F++ G + + G +++D+ S G L+ D V +KFS +GK +L T
Sbjct: 179 VHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 235
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-PDGQYVVSGSGDGTLHAWNINTRNE 214
+N + + D G+ ++ + A F+ G+++VSGS D ++ WN+ T+
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 295
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAAS 241
V G+ VV P + +A+
Sbjct: 296 VQKLQGHTDVVISTACHPTENIIASAA 322
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKR-CGFSLEPSPNTNTEA 186
F + G T V +KFS +G+ + ++ + I + AY G EK G L S +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-----DV 95
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
++ D +VS S D TL W++++ + G+ V C + P+ + V+ S
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+V F G A + IK++ + YD G F+ + G + D+ +S+D ++
Sbjct: 52 SVKFSPNGEWLASSSADKLIKIWGA--YD-GKFEK-TISGHKLGISDVAWSSDSNLLVSA 107
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211
+ + + + D G +C +L+ N F P +VSGS D ++ W++ T
Sbjct: 108 SDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF-DTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
AF A +K++DS + G T+ + C F+N +LL T
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSAT---GKLVHTYDEHSEQVNCC--HFTNKSNHLLLAT 718
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214
+N+ ++ +K C ++ N+ F+PD + + S S DGTL W++ + NE
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 106 AVAMEAGAIKLFD---SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162
A E GAIK+ + +R + G VG A V I+F+ DGK+++ ++ ++ I V
Sbjct: 977 AFGDEDGAIKIIELPNNRVFSSG------VGHKKA-VRHIQFTADGKTLISSSEDSVIQV 1029
Query: 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACWN 219
+ G+ L+ T + D + ++S S DGT+ WN+ T + C
Sbjct: 1030 WNWQTGDY---VFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQ 1085
Query: 220 GNI 222
G +
Sbjct: 1086 GTV 1088
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 203
FS DG+ + + + V A GEK ++ + F+ D Y+ + S D
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 204 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 248
+ W+ T V ++ + V C + + + A+ F++
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 21/144 (14%)
Query: 112 GAIKLFDSRSYDKGPFDT----FLVGGDTAEVCDI-----KFSNDGKSMLLTTTNNNIYV 162
G ++L+D RS ++ FL D E ++ +S DG +++ N + +
Sbjct: 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLL 823
Query: 163 LDAYGGEKRCGFSLEPSPNTNTEAT-----FTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217
D + L +T +T F+P V + WNI++R +VA
Sbjct: 824 FDIHTS------GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877
Query: 218 WNGNIGVVACLKWAPRRAMFVAAS 241
G++ V + ++P + F+ AS
Sbjct: 878 CRGHLSWVHGVMFSPDGSSFLTAS 901
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF-DTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
AF A +K++DS + G T+ + C F+N +LL T
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSAT---GKLVHTYDEHSEQVNCC--HFTNKSNHLLLAT 725
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214
+N+ ++ +K C ++ N+ F+PD + + S S DGTL W++ + NE
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 106 AVAMEAGAIKLFD---SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162
A E GAIK+ + +R + G VG A V I+F+ DGK+++ ++ ++ I V
Sbjct: 984 AFGDEDGAIKIIELPNNRVFSSG------VGHKKA-VRHIQFTADGKTLISSSEDSVIQV 1036
Query: 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACWN 219
+ G+ L+ T + D + ++S S DGT+ WN+ T + C
Sbjct: 1037 WNWQTGDY---VFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQ 1092
Query: 220 GNI 222
G +
Sbjct: 1093 GTV 1095
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 203
FS DG+ + + + V A GEK ++ + F+ D Y+ + S D
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 204 LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 248
+ W+ T V ++ + V C + + + A+ F++
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 21/144 (14%)
Query: 112 GAIKLFDSRSYDKGPFDT----FLVGGDTAEVCDI-----KFSNDGKSMLLTTTNNNIYV 162
G ++L+D RS ++ FL D E ++ +S DG +++ N + +
Sbjct: 772 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLL 830
Query: 163 LDAYGGEKRCGFSLEPSPNTNTEAT-----FTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217
D + L +T +T F+P V + WNI++R +VA
Sbjct: 831 FDIHTS------GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 884
Query: 218 WNGNIGVVACLKWAPRRAMFVAAS 241
G++ V + ++P + F+ AS
Sbjct: 885 CRGHLSWVHGVMFSPDGSSFLTAS 908
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 48/171 (28%)
Query: 104 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163
V A E IK++D Y+ G F+ L G T V DI F + GK + + + I +
Sbjct: 122 VMVSASEDATIKVWD---YETGDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Query: 164 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI- 222
D G E C ++ + + + P+G ++VS S D T+ W + T V + G+
Sbjct: 178 DFQGFE--CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235
Query: 223 -----------------------------------------GVVACLKWAP 232
VV C+ WAP
Sbjct: 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 82 ASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCD 141
+S+ I G T + G IK++D + G LVG D V
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNW-VRG 343
Query: 142 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201
+ F + GK +L + + V D KRC +L + T F YVV+GS D
Sbjct: 344 VLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 202 GTLHAWN 208
T+ W
Sbjct: 402 QTVKVWE 408
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 247
D +Y+VS SGD T+ WN +T V NG+ +ACL++ R + ++ + + W
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 321
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPN 250
D Q +VSG D T+ W+ NT G+ G V CL++ R + ++ S + W N
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 247
+ VVSGS D T+ W+I + G+ +V C+++ +R + A + W
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 136 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE---------- 185
T+ VC +KFSNDG+ L T N V G S + + N + E
Sbjct: 64 TSVVCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 186 ------ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239
F+PDG+++ +G+ D + W+I R V G+ + L + P V+
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 240 AS 241
S
Sbjct: 183 GS 184
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 147 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT----------FTPDGQYVV 196
DGK + + + + V D+ GF +E + N T FT DGQ VV
Sbjct: 218 DGKYIAAGSLDRAVRVWDS-----ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272
Query: 197 SGSGDGTLHAWNINTRN 213
SGS D ++ WN+ N
Sbjct: 273 SGSLDRSVKLWNLQNAN 289
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154
+V F G A E I+++D + ++ G ++ + + G ++
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKI----VMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211
+ + + + D G+ C +L T A DG+Y+ +GS D + W+ T
Sbjct: 184 SGDRTVRIWDLRTGQ--CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 203
F+N +LL T +++ ++ +K C ++ N+ F+PD + + S S DGT
Sbjct: 713 FTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGT 772
Query: 204 LHAWNINTRNE 214
L W+ + NE
Sbjct: 773 LKLWDATSANE 783
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 19/143 (13%)
Query: 112 GAIKLFDSRSYDKGPF----DTFLVGGDTAEVCDI-----KFSNDGKSMLLTTTNNNIYV 162
G +KL+D+ S ++ FL D E ++ +S DG + ++ N I++
Sbjct: 771 GTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADG-ARIMVAAKNKIFL 829
Query: 163 LDAYG----GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 218
D + GE G +T F+P V + WN ++R++VA
Sbjct: 830 FDIHTSGLLGEIHTGHH-----STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADC 884
Query: 219 NGNIGVVACLKWAPRRAMFVAAS 241
G++ V + ++P + F+ +S
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSS 907
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214
+T+ + V +A GE C +L +T+T + VVSGS D TL W+I T
Sbjct: 176 STDRTLKVWNAETGE--CIHTL--YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 231
Query: 215 VACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 253
+ G++ V C+++ RR + A ++ W P +
Sbjct: 232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET 270
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 195 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 247
++SGS D TL WN T + G+ V C+ +R + + + L W
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 224
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 240
+TN + DG +VVSGS D ++ W++ T N + G+ + + ++ + A
Sbjct: 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 337
Query: 241 SSVLSFW 247
S + W
Sbjct: 338 DSTVKIW 344
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 179
+S D GP D + + FS D + + T + + G+K +SL+
Sbjct: 116 KSIDAGPVDAWT----------LAFSPDSQYLATGTHVGKVNIFGVESGKKE--YSLDTR 163
Query: 180 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239
++PDG+Y+ SG+ DG ++ ++I T + G+ + L ++P + V
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 240 AS 241
AS
Sbjct: 224 AS 225
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 10/173 (5%)
Query: 69 TTALEYGIFVLMLASFQGILRLRGRP----TVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 124
+++L+ I + L + + I + P T+AF A G + +F S K
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156
Query: 125 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT 184
+ + + I +S DGK + + I + D G + +LE
Sbjct: 157 ----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPIR 210
Query: 185 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 237
TF+PD Q +V+ S DG + +++ N +G+ V + + P F
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL++ G L G ++ V + FS DG+++ +
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASAS 322
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ + + + G + L ++ F+PDGQ + S S D T+ WN N
Sbjct: 323 DDKTVKLWNRNGQHLQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL +++ + G ++ V + FS DG+++ +
Sbjct: 309 VAFSPDGQTIASASDDKTVKL-----WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 364 DDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL++ G L G ++ V + FS DG+++ +
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASAS 76
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 77 DDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL++ G L G ++ V + FS DG+++ +
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASAS 199
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 200 DDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL++ G L G ++ V + FS DG+++ +
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDGQTIASAS 158
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 159 DDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL++ G L G ++ V + FS DG+++ +
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS 117
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 118 DDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL++ G L G ++ V + FS DG+++ +
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS 527
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
+ + + + G + +L ++ F+PDGQ + S S D T+ WN
Sbjct: 528 DDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL++ G L G ++ V + F DG+++ +
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVNGVAFRPDGQTIASAS 281
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213
+ + + + G + +L ++ F+PDGQ + S S D T+ WN N ++
Sbjct: 282 DDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF G A A + +KL++ G L G ++ V + FS D +++ +
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVWGVAFSPDDQTIASAS 445
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 446 DDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155
VAF A A + +KL++ G L G ++ V + FS DG+++ +
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNR----NGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS 486
Query: 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ + + + G + +L ++ F+PDGQ + S S D T+ WN N
Sbjct: 487 DDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193
G +A V D+ SN+G + + ++++ + + G+ C + F+PD +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ--CQYKFLGHTKDVLSVAFSPDNR 122
Query: 194 YVVSGSGDGTLHAWNI 209
+VSG D L WN+
Sbjct: 123 QIVSGGRDNALRVWNV 138
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN--TEATFTP- 190
G T +V + FS D + ++ +N + V + G C +L +T+ + F+P
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG---ECMHTLSRGAHTDWVSCVRFSPS 163
Query: 191 -DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232
D +VSG D + W++ T V G+ V + +P
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSML 152
+ F G FA + +LFD R+ + D + G + + FS G+ +L
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLL 286
Query: 153 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
+ N V DA + R G L N + T DG V +GS D L WN
Sbjct: 287 AGYDDFNCNVWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSML 152
+ F G FA + +LFD R+ + D + G + + FS G+ +L
Sbjct: 243 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLL 297
Query: 153 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
+ N V DA + R G L N + T DG V +GS D L WN
Sbjct: 298 AGYDDFNCNVWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSML 152
+ F G FA + +LFD R+ + D + G + + FS G+ +L
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLL 286
Query: 153 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
+ N V DA + R G L N + T DG V +GS D L WN
Sbjct: 287 AGYDDFNCNVWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193
G A++ + + D + +L + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 194 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLK 229
YV G D +N+ TR E+A G+ G ++C +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCR 150
>pdb|1THG|A Chain A, 1.8 Angstroms Refined Structure Of The Lipase From
Geotrichum Candidum
Length = 544
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFD 99
F + +G++ F AC+QL L LL AL G+ ++ F+G L + TV+ +
Sbjct: 45 FTGSYQGLKANDFSPACMQLDPGNSLTLLDKAL--GLAKVIPEEFRGPLYDMAKGTVSMN 102
Query: 100 QQGLVFAVAMEAG 112
+ L V AG
Sbjct: 103 EDCLYLNVFRPAG 115
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSML 152
+ F G FA + +LFD R+ + D + G + + FS G+ +L
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLL 286
Query: 153 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
+ N V DA + R G L N + T DG V +GS D L WN
Sbjct: 287 AGYDDFNCNVWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSML 152
+ F G FA + +LFD R+ + D + G + + FS G+ +L
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLL 286
Query: 153 LTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208
+ N V DA + R G L N + T DG V +GS D L WN
Sbjct: 287 AGYDDFNCNVWDALKAD-RAGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193
G A++ + + D + +L + + + + D+Y K L S + P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAYAPSGN 110
Query: 194 YVVSGSGDGTLHAWNINTRN-------EVACWNGNIGVVACLK 229
YV G D +N+ TR E+A G+ G ++C +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELA---GHTGYLSCCR 150
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 133 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA-----T 187
G T V ++++ DG T + I + + G K F + N T
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 188 FTPDGQYVVSGSGDGTLHAWNINT 211
++PDG + S S D T+ WN+ T
Sbjct: 247 WSPDGTKIASASADKTIKIWNVAT 270
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 184 TEATFTPDGQYVVSGSGDGTLHAWNINT 211
++ + DGQ+ +SGS DGTL W++ T
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTT 117
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
T +PDG SG DG W++N + +G ++ L ++P R AA+
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAAT 275
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 184 TEATFTPDGQYVVSGSGDGTLHAWNINT 211
++ + DGQ+ +SGS DGTL W++ T
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTT 94
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
T +PDG SG DG W++N + +G ++ L ++P R AA+
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAAT 252
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229
K C +LE + + A F P ++SGS DGTL WN +T N + C+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Query: 230 WAPR-RAMFVAA 240
P R ++A+
Sbjct: 278 THPTGRKNYIAS 289
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 190 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIP 249
PD Y+++ S D T+ W+ T++ VA G++ V+ + P + ++ S + I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 250 NPSSNSTDES 259
N S+ +++
Sbjct: 256 NSSTYKVEKT 265
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229
K C +LE + + A F P ++SGS DGTL WN +T N + C+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Query: 230 WAPR-RAMFVAA 240
P R ++A+
Sbjct: 278 THPTGRKNYIAS 289
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 190 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIP 249
PD Y+++ S D T+ W+ T++ VA G++ V+ + P + ++ S + I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 250 NPSSNSTDES 259
N S+ +++
Sbjct: 256 NSSTYKVEKT 265
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 203
++ D + + N+ +++ + G + L+ T + PD +V+ D
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75
Query: 204 LHAWNINTRNEVACWNGNIGVVA------CLKWAPRRAMFVAAS 241
+ W + R W + ++ C++WAP F S
Sbjct: 76 AYVWTLKGRT----WKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229
K C +LE + + A F P ++SGS DGTL WN +T N + C+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Query: 230 WAPR-RAMFVAA 240
P R ++A+
Sbjct: 278 THPTGRKNYIAS 289
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 190 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFW 247
PD Y+++ S D T+ W+ T++ VA G++ V+ + P + ++ S L W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229
K C +LE + + A F P ++SGS DGTL WN +T N + C+
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Query: 230 WAPR-RAMFVAA 240
P R ++A+
Sbjct: 278 THPTGRKNYIAS 289
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 190 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--VLSFW 247
PD Y+++ S D T+ W+ T++ VA G++ V+ + P + ++ S L W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC---WNGNIGVVAC 227
C +LE N + P G + + S D ++ W ++ +E C N + V
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 228 LKWAPRRAMFVAAS 241
+ W P + + +AS
Sbjct: 156 VVWHPSQELLASAS 169
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 177 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC---WNGNIGVVACLKWAPR 233
E T + ++P G Y+ S S D T W N +++ C G+ V + WAP
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN-QDDFECVTTLEGHENEVKSVAWAPS 116
Query: 234 RAMFVAASSVLSFWI 248
+ S S W+
Sbjct: 117 GNLLATCSRDKSVWV 131
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232
+FT +++ SGDGT W++ + + ++G+ V CL AP
Sbjct: 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT 203
++ D + + N+ +++ + G + L+ T + PD +V+ D
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN 75
Query: 204 LHAWNINTRNEVACWNGNIGVVA------CLKWAPRRAMFVAAS 241
+ W + R W + ++ C++WAP F S
Sbjct: 76 AYVWTLKGRT----WKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|2BOV|B Chain B, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 251
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131
LEYG + S + + GRP + A +AG I D S G + L
Sbjct: 168 LEYG---YISTSLMNVSQFAGRPIIT----KFKVAKGSKAGYI---DPISAFAGQLEMLL 217
Query: 132 VGGDTAEVCDIKFSNDGKSMLLTTT 156
T + D++ S+DGK +++T T
Sbjct: 218 PRHSTYHIDDMRLSSDGKQIIITAT 242
>pdb|2A78|B Chain B, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|B Chain B, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 223
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 62 ALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRS 121
A L LEYG + S + + GRP + A +AG I D S
Sbjct: 130 AKAKFLNKDRLEYG---YISTSLMNVSQFAGRPIIT----KFKVAKGSKAGYI---DPIS 179
Query: 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 156
G + L T + D++ S+DGK +++T T
Sbjct: 180 AFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITAT 214
>pdb|1G24|A Chain A, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|B Chain B, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|C Chain C, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1G24|D Chain D, The Crystal Structure Of Exoenzyme C3 From Clostridium
Botulinum
pdb|1GZF|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1GZF|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (Wild-
Type) In Complex With Nad
pdb|1UZI|A Chain A, C3 Exoenzyme From Clostridium Botulinum, Tetragonal Form
pdb|1UZI|B Chain B, C3 Exoenzyme From Clostridium Botulinum, Tetragonal Form
pdb|2C89|A Chain A, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|B Chain B, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|C Chain C, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C89|D Chain D, Structure Of The Wild-Type C3bot1 Exoenzyme (Free State,
Crystal Form I)
pdb|2C8A|A Chain A, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|B Chain B, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|C Chain C, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
pdb|2C8A|D Chain D, Structure Of The Wild-Type C3bot1 Exoenzyme (Nicotinamide-
Bound State, Crystal Form I)
Length = 211
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 62 ALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRS 121
A L LEYG + S + + GRP + A +AG I D S
Sbjct: 118 AKAKFLNKDRLEYG---YISTSLMNVSQFAGRPIIT----KFKVAKGSKAGYI---DPIS 167
Query: 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 156
G + L T + D++ S+DGK +++T T
Sbjct: 168 AFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITAT 202
>pdb|2C8B|X Chain X, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
( Free State, Crystal Form Ii)
pdb|2C8C|A Chain A, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|B Chain B, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|C Chain C, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8C|D Chain D, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form I)
pdb|2C8D|A Chain A, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|B Chain B, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|C Chain C, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8D|D Chain D, Structure Of The Artt Motif Q212a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
Length = 211
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131
LEYG + S + + GRP + A +AG I D S G + L
Sbjct: 128 LEYG---YISTSLMNVSQFAGRPIIT----KFKVAKGSKAGYI---DPISAFAGALEMLL 177
Query: 132 VGGDTAEVCDIKFSNDGKSMLLTTT 156
T + D++ S+DGK +++T T
Sbjct: 178 PRHSTYHIDDMRLSSDGKQIIITAT 202
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 176 LEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNI 209
+E PN+ T + +P + Y+++GS G + WN+
Sbjct: 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNL 93
>pdb|2C8E|E Chain E, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8E|F Chain F, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8E|G Chain G, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Free State, Crystal Form Iii)
pdb|2C8F|E Chain E, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
pdb|2C8F|F Chain F, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
pdb|2C8F|G Chain G, Structure Of The Artt Motif E214n Mutant C3bot1 Exoenzyme
(Nad-Bound State, Crystal Form Iii)
Length = 211
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 62 ALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRS 121
A L LEYG + S + + GRP + A +AG I D S
Sbjct: 118 AKAKFLNKDRLEYG---YISTSLMNVSQFAGRPIIT----KFKVAKGSKAGYI---DPIS 167
Query: 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT 156
G + L T + D++ S+DGK +++T T
Sbjct: 168 AFAGQLNMLLPRHSTYHIDDMRLSSDGKQIIITAT 202
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 164 DAYGGEKRCGFSLEPS--PNTN-----TEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215
D Y KR F +TN F+P +++ + DG + WN+ TR ++
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 164 DAYGGEKRCGFSLEPS--PNTN-----TEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215
D Y KR F +TN F+P +++ + DG + WN+ TR ++
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTN-----TEATF 188
G ++ +KF DG+ + + + D G + ++ EP N N T F
Sbjct: 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306
Query: 189 TPDGQYVVSGSGDGTLHAWN 208
+ G+ + +G +G + W+
Sbjct: 307 SISGRLLFAGYSNGDCYVWD 326
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 164 DAYGGEKRCGFSLEPS--PNTN-----TEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215
D Y KR F +TN F+P +++ + DG + WN+ TR ++
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 164 DAYGGEKRCGFSLEPS--PNTN-----TEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215
D Y KR F +TN F+P +++ + DG + WN+ TR ++
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 185 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
+ T T DG Y +S S D TL W++ T + G+ V + + +M ++ S
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 185 EATFTPDGQYVVSGSGDGTLHAWNINT 211
+ T T DG Y +S S D TL W++ T
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 185 EATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241
+ T T DG Y +S S D TL W++ T + G+ V + + +M ++ S
Sbjct: 64 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 185 EATFTPDGQYVVSGSGDGTLHAWNINT 211
+ T T DG Y +S S D TL W++ T
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 185 EATFTPDGQYVVSGSGDGTLHAWNINT 211
+ T T DG Y +S S D TL W++ T
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 185 EATFTPDGQYVVSGSGDGTLHAWNINT 211
+ T T DG Y +S S D TL W++ T
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 185 EATFTPDGQYVVSGSGDGTLHAWNI 209
+ + DGQ+ +SGS DG L W++
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDL 459
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE----ATFT 189
G T +V + FS D + ++ + + I + + G C +++ + + F+
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFS 526
Query: 190 PD--GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232
P+ +VS S D T+ WN++ + G+ G V+ + +P
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP 571
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 193 QYVVSGSGDGTLHAWNINTRNEV 215
+Y+V+GS D TLH W + + V
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSV 240
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 134 GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-------------LEPSP 180
G +EV + FS D + +L I + + G C FS + SP
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG---ECKFSSAEKENHSDWVSCVRYSP 172
Query: 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210
+ P Y S DG L WN N
Sbjct: 173 IMKSANKVQPFAPYFASVGWDGRLKVWNTN 202
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 193 QYVVSGSGDGTLHAWNINTRNEV 215
+Y+V+GS D TLH W + + V
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSV 240
>pdb|2C8G|A Chain A, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|B Chain B, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|C Chain C, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8G|D Chain D, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Free State, Crystal Form I)
pdb|2C8H|A Chain A, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|B Chain B, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|C Chain C, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
pdb|2C8H|D Chain D, Structure Of The Pn Loop Q182a Mutant C3bot1 Exoenzyme
(Nad- Bound State, Crystal Form I)
Length = 211
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131
LEYG + S + GRP + A +AG I D S G + L
Sbjct: 128 LEYG---YISTSLMNVSAFAGRPIIT----KFKVAKGSKAGYI---DPISAFAGQLEMLL 177
Query: 132 VGGDTAEVCDIKFSNDGKSMLLTTT 156
T + D++ S+DGK +++T T
Sbjct: 178 PRHSTYHIDDMRLSSDGKQIIITAT 202
>pdb|1GZE|A Chain A, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|B Chain B, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|C Chain C, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
pdb|1GZE|D Chain D, Structure Of The Clostridium Botulinum C3 Exoenzyme (L177c
Mutant)
Length = 211
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131
LEYG + S + + GRP + A +AG I D S G + L
Sbjct: 128 LEYG---YISTSCMNVSQFAGRPIIT----KFKVAKGSKAGYI---DPISAFAGQLEMLL 177
Query: 132 VGGDTAEVCDIKFSNDGKSMLLTTT 156
T + D++ S+DGK +++T T
Sbjct: 178 PRHSTYHIDDMRLSSDGKQIIITAT 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,713,996
Number of Sequences: 62578
Number of extensions: 321309
Number of successful extensions: 1192
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 285
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)