Query 024185
Match_columns 271
No_of_seqs 497 out of 1365
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 02:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-43 1.7E-47 265.9 17.4 241 6-260 182-428 (459)
2 KOG0271 Notchless-like WD40 re 100.0 5.1E-40 1.1E-44 248.0 21.2 244 2-259 118-448 (480)
3 KOG0279 G protein beta subunit 100.0 1.8E-38 3.9E-43 230.4 25.6 237 12-259 28-271 (315)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-40 3.7E-45 253.1 15.3 221 13-248 233-458 (459)
5 KOG0263 Transcription initiati 100.0 2E-39 4.4E-44 264.3 18.9 206 37-253 443-652 (707)
6 KOG0271 Notchless-like WD40 re 100.0 1.1E-37 2.3E-42 235.5 20.1 241 2-248 160-479 (480)
7 KOG0286 G-protein beta subunit 100.0 6.2E-36 1.3E-40 218.6 24.4 215 38-260 48-269 (343)
8 KOG0286 G-protein beta subunit 100.0 1.5E-35 3.3E-40 216.6 25.8 228 11-248 109-343 (343)
9 KOG0279 G protein beta subunit 100.0 2.5E-35 5.4E-40 214.1 22.6 214 37-259 7-231 (315)
10 KOG0315 G-protein beta subunit 100.0 1E-34 2.3E-39 207.8 24.2 236 12-259 52-297 (311)
11 KOG0295 WD40 repeat-containing 100.0 7.1E-36 1.5E-40 224.1 18.3 239 8-261 117-375 (406)
12 KOG1446 Histone H3 (Lys4) meth 100.0 4.7E-33 1E-37 205.7 28.1 225 20-253 79-306 (311)
13 KOG0284 Polyadenylation factor 100.0 1.5E-35 3.2E-40 225.4 13.6 236 8-259 105-346 (464)
14 KOG0273 Beta-transducin family 100.0 7.8E-34 1.7E-38 219.6 21.8 230 13-259 249-491 (524)
15 KOG0285 Pleiotropic regulator 100.0 2.6E-34 5.7E-39 215.6 17.5 212 36-258 142-356 (460)
16 KOG0263 Transcription initiati 100.0 5.6E-34 1.2E-38 232.7 20.3 208 41-259 374-616 (707)
17 KOG0266 WD40 repeat-containing 100.0 3.6E-33 7.7E-38 230.9 25.2 236 12-258 172-417 (456)
18 KOG0282 mRNA splicing factor [ 100.0 1.5E-34 3.3E-39 224.1 14.4 230 7-248 222-503 (503)
19 KOG0266 WD40 repeat-containing 100.0 9.3E-33 2E-37 228.5 24.7 206 43-259 157-373 (456)
20 KOG0645 WD40 repeat protein [G 100.0 8.6E-32 1.9E-36 195.0 25.0 205 37-250 6-225 (312)
21 KOG0315 G-protein beta subunit 100.0 1.3E-31 2.8E-36 192.0 24.7 223 14-252 12-247 (311)
22 KOG0295 WD40 repeat-containing 100.0 2.1E-32 4.6E-37 205.5 20.3 224 12-249 162-405 (406)
23 KOG0284 Polyadenylation factor 100.0 4.1E-34 8.9E-39 217.6 10.9 221 14-249 153-379 (464)
24 KOG0319 WD40-repeat-containing 100.0 2.4E-33 5.3E-38 227.4 15.6 243 6-258 369-627 (775)
25 KOG0306 WD40-repeat-containing 100.0 1.9E-32 4.1E-37 222.8 20.5 240 2-256 415-670 (888)
26 KOG0285 Pleiotropic regulator 100.0 3.2E-32 7E-37 204.4 20.2 238 5-258 157-397 (460)
27 KOG0291 WD40-repeat-containing 100.0 1.9E-31 4.1E-36 217.1 26.1 233 7-252 273-510 (893)
28 KOG0276 Vesicle coat complex C 100.0 5.3E-32 1.2E-36 216.3 20.4 237 8-258 22-265 (794)
29 KOG0291 WD40-repeat-containing 100.0 4.3E-31 9.3E-36 215.1 25.7 232 12-258 320-558 (893)
30 PTZ00421 coronin; Provisional 100.0 3.9E-30 8.6E-35 212.5 27.8 207 40-256 70-296 (493)
31 KOG0265 U5 snRNP-specific prot 100.0 3.4E-31 7.3E-36 194.5 18.8 205 38-254 40-250 (338)
32 KOG0319 WD40-repeat-containing 100.0 2.1E-31 4.6E-36 216.2 19.3 240 9-260 334-587 (775)
33 cd00200 WD40 WD40 domain, foun 100.0 1.1E-29 2.3E-34 198.7 28.6 235 9-258 19-257 (289)
34 cd00200 WD40 WD40 domain, foun 100.0 1.3E-29 2.9E-34 198.2 27.9 225 9-248 61-289 (289)
35 KOG0273 Beta-transducin family 100.0 7.8E-30 1.7E-34 197.6 24.8 228 6-250 280-523 (524)
36 PLN00181 protein SPA1-RELATED; 100.0 2.4E-29 5.2E-34 222.2 31.0 224 11-249 545-792 (793)
37 KOG0293 WD40 repeat-containing 100.0 2E-30 4.3E-35 198.1 20.2 236 11-252 236-515 (519)
38 KOG0316 Conserved WD40 repeat- 100.0 6.5E-30 1.4E-34 182.1 20.8 227 14-249 32-298 (307)
39 KOG0265 U5 snRNP-specific prot 100.0 7.3E-30 1.6E-34 187.5 21.6 228 7-246 98-334 (338)
40 KOG0296 Angio-associated migra 100.0 5.2E-29 1.1E-33 187.4 26.6 226 11-250 75-398 (399)
41 KOG0292 Vesicle coat complex C 100.0 1.7E-30 3.7E-35 215.0 19.3 238 7-259 17-289 (1202)
42 KOG0281 Beta-TrCP (transducin 100.0 6.1E-32 1.3E-36 202.5 9.6 231 5-255 200-433 (499)
43 KOG0316 Conserved WD40 repeat- 100.0 2.8E-30 6E-35 183.9 17.0 208 37-259 9-222 (307)
44 KOG0643 Translation initiation 100.0 5.1E-29 1.1E-33 180.5 23.6 229 12-251 22-318 (327)
45 KOG0276 Vesicle coat complex C 100.0 5.7E-30 1.2E-34 204.8 20.4 217 10-241 66-288 (794)
46 KOG0645 WD40 repeat protein [G 100.0 7.2E-28 1.6E-32 174.8 27.8 238 4-250 19-311 (312)
47 KOG0278 Serine/threonine kinas 100.0 1.5E-30 3.2E-35 186.9 12.8 226 18-255 36-302 (334)
48 PTZ00420 coronin; Provisional 100.0 2.7E-28 5.8E-33 202.8 28.3 207 37-253 66-296 (568)
49 KOG0282 mRNA splicing factor [ 100.0 9.2E-31 2E-35 203.2 12.2 212 36-259 205-471 (503)
50 KOG0274 Cdc4 and related F-box 100.0 1.2E-28 2.6E-33 204.2 22.0 230 12-261 219-452 (537)
51 PLN00181 protein SPA1-RELATED; 100.0 1.5E-27 3.2E-32 210.9 29.8 231 9-253 493-741 (793)
52 KOG0305 Anaphase promoting com 100.0 2E-28 4.3E-33 196.5 21.9 226 9-252 227-463 (484)
53 KOG0318 WD40 repeat stress pro 100.0 8.6E-28 1.9E-32 188.7 24.2 211 36-259 50-274 (603)
54 KOG0289 mRNA splicing factor [ 100.0 2.2E-28 4.8E-33 187.9 19.1 204 47-259 221-428 (506)
55 KOG0277 Peroxisomal targeting 100.0 5.2E-29 1.1E-33 179.2 14.6 225 12-249 74-308 (311)
56 KOG0289 mRNA splicing factor [ 100.0 9.3E-28 2E-32 184.5 21.4 228 10-250 230-460 (506)
57 KOG1407 WD40 repeat protein [F 100.0 1.5E-27 3.2E-32 172.4 20.8 234 12-258 33-269 (313)
58 KOG0277 Peroxisomal targeting 100.0 5.6E-28 1.2E-32 173.9 18.4 223 19-253 36-268 (311)
59 KOG0264 Nucleosome remodeling 100.0 1E-27 2.2E-32 185.1 20.9 239 8-254 133-408 (422)
60 KOG0640 mRNA cleavage stimulat 100.0 1.2E-28 2.5E-33 182.4 14.9 214 38-258 105-343 (430)
61 KOG0296 Angio-associated migra 100.0 2E-27 4.4E-32 178.9 21.3 211 37-258 56-271 (399)
62 KOG0275 Conserved WD40 repeat- 100.0 1E-29 2.2E-34 189.3 8.4 201 43-254 211-427 (508)
63 KOG0318 WD40 repeat stress pro 100.0 1.3E-26 2.7E-31 182.3 25.9 207 40-256 142-356 (603)
64 PTZ00421 coronin; Provisional 100.0 9.6E-27 2.1E-31 192.5 26.0 199 48-253 23-248 (493)
65 KOG0313 Microtubule binding pr 100.0 2.8E-27 6E-32 179.1 20.3 237 12-259 116-386 (423)
66 KOG0292 Vesicle coat complex C 100.0 5E-27 1.1E-31 194.7 23.5 238 6-254 58-325 (1202)
67 PTZ00420 coronin; Provisional 100.0 1.5E-26 3.2E-31 192.5 25.5 182 67-251 49-249 (568)
68 KOG0275 Conserved WD40 repeat- 100.0 1.5E-28 3.3E-33 183.0 11.6 232 8-248 222-507 (508)
69 KOG0640 mRNA cleavage stimulat 100.0 8.6E-28 1.9E-32 177.8 15.4 177 37-219 164-344 (430)
70 KOG0281 Beta-TrCP (transducin 100.0 2.4E-28 5.2E-33 183.3 12.5 228 5-257 240-484 (499)
71 KOG0772 Uncharacterized conser 100.0 7E-28 1.5E-32 189.0 14.5 209 40-253 162-397 (641)
72 KOG0643 Translation initiation 100.0 9.6E-27 2.1E-31 168.7 19.3 208 41-260 6-230 (327)
73 KOG0294 WD40 repeat-containing 100.0 3.3E-26 7.2E-31 169.5 22.3 201 38-252 36-283 (362)
74 KOG0310 Conserved WD40 repeat- 100.0 2.3E-27 5.1E-32 184.6 16.7 208 39-259 62-277 (487)
75 KOG0308 Conserved WD40 repeat- 100.0 2.5E-27 5.5E-32 190.3 15.9 236 9-251 35-286 (735)
76 KOG0772 Uncharacterized conser 100.0 1.3E-26 2.8E-31 181.9 19.1 204 41-249 264-486 (641)
77 KOG0274 Cdc4 and related F-box 100.0 3.7E-26 7.9E-31 189.5 22.9 225 12-257 261-489 (537)
78 KOG0283 WD40 repeat-containing 100.0 9.4E-27 2E-31 192.0 19.2 205 39-258 260-540 (712)
79 KOG0288 WD40 repeat protein Ti 99.9 1E-26 2.2E-31 177.7 16.2 220 12-247 232-458 (459)
80 KOG1407 WD40 repeat protein [F 99.9 2.3E-25 5E-30 161.1 21.7 217 8-241 73-291 (313)
81 KOG0305 Anaphase promoting com 99.9 6E-26 1.3E-30 182.4 20.8 228 15-259 191-428 (484)
82 KOG0313 Microtubule binding pr 99.9 1.4E-25 3E-30 169.9 20.1 223 14-250 162-418 (423)
83 KOG0306 WD40-repeat-containing 99.9 1.5E-25 3.2E-30 183.0 20.4 237 7-257 380-629 (888)
84 KOG0267 Microtubule severing p 99.9 2.8E-27 6.1E-32 192.2 10.4 192 39-241 64-257 (825)
85 KOG0310 Conserved WD40 repeat- 99.9 2E-25 4.4E-30 173.9 19.8 222 12-249 80-308 (487)
86 KOG0646 WD40 repeat protein [G 99.9 1.2E-25 2.6E-30 174.3 18.3 208 44-259 80-316 (476)
87 KOG1446 Histone H3 (Lys4) meth 99.9 9.3E-25 2E-29 161.9 22.0 210 39-261 8-228 (311)
88 KOG0283 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 185.6 18.1 210 33-253 357-579 (712)
89 KOG0299 U3 snoRNP-associated p 99.9 2.5E-25 5.5E-30 172.2 18.7 230 10-252 153-412 (479)
90 KOG0267 Microtubule severing p 99.9 1.9E-27 4.2E-32 193.1 7.2 208 41-259 24-235 (825)
91 KOG0973 Histone transcription 99.9 1.7E-25 3.8E-30 189.1 18.5 206 41-253 9-256 (942)
92 KOG0641 WD40 repeat protein [G 99.9 1.2E-23 2.5E-28 149.7 24.9 206 37-252 81-305 (350)
93 KOG0973 Histone transcription 99.9 5.9E-25 1.3E-29 185.9 21.6 211 36-255 60-317 (942)
94 KOG0264 Nucleosome remodeling 99.9 1.8E-25 3.8E-30 172.8 16.6 204 42-251 121-348 (422)
95 KOG0269 WD40 repeat-containing 99.9 4.7E-26 1E-30 186.3 13.0 220 13-241 101-329 (839)
96 KOG0269 WD40 repeat-containing 99.9 1.3E-25 2.9E-30 183.7 14.7 193 50-253 92-299 (839)
97 KOG0647 mRNA export protein (c 99.9 1.4E-24 3E-29 160.1 18.5 210 41-259 23-290 (347)
98 KOG0302 Ribosome Assembly prot 99.9 4.5E-25 9.8E-30 167.1 15.5 207 42-254 148-382 (440)
99 KOG0288 WD40 repeat protein Ti 99.9 6.2E-26 1.4E-30 173.5 11.0 234 9-259 185-426 (459)
100 KOG0293 WD40 repeat-containing 99.9 5.8E-25 1.2E-29 168.4 15.8 211 36-257 215-432 (519)
101 KOG2096 WD40 repeat protein [G 99.9 2.5E-24 5.5E-29 160.0 18.1 208 37-252 78-310 (420)
102 KOG0300 WD40 repeat-containing 99.9 7.8E-25 1.7E-29 162.9 15.4 212 34-253 137-389 (481)
103 KOG0639 Transducin-like enhanc 99.9 1.4E-24 3E-29 170.3 15.5 232 12-256 431-669 (705)
104 KOG1274 WD40 repeat protein [G 99.9 2E-23 4.4E-28 173.9 22.5 229 9-251 23-263 (933)
105 KOG1408 WD40 repeat protein [F 99.9 9.3E-24 2E-28 172.1 20.1 243 9-252 334-715 (1080)
106 KOG0308 Conserved WD40 repeat- 99.9 4.7E-25 1E-29 177.4 12.3 191 65-259 40-252 (735)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.1E-22 8.8E-27 157.8 28.4 227 18-259 50-288 (300)
108 KOG1332 Vesicle coat complex C 99.9 1.9E-23 4.1E-28 149.9 17.5 230 13-251 25-287 (299)
109 KOG0301 Phospholipase A2-activ 99.9 3.3E-23 7.1E-28 168.0 19.5 219 14-257 74-295 (745)
110 KOG1036 Mitotic spindle checkp 99.9 1.5E-22 3.2E-27 149.8 21.1 217 12-241 66-293 (323)
111 KOG2048 WD40 repeat protein [G 99.9 3E-22 6.5E-27 162.0 24.7 230 13-253 39-278 (691)
112 KOG1332 Vesicle coat complex C 99.9 3.1E-24 6.7E-29 153.9 11.3 201 41-250 7-241 (299)
113 KOG1539 WD repeat protein [Gen 99.9 6.2E-22 1.3E-26 163.7 26.3 241 9-259 212-615 (910)
114 KOG4283 Transcription-coupled 99.9 5.4E-23 1.2E-27 151.5 16.6 203 41-255 39-281 (397)
115 KOG2096 WD40 repeat protein [G 99.9 2.8E-22 6E-27 149.3 20.3 200 43-249 185-401 (420)
116 KOG0278 Serine/threonine kinas 99.9 1.2E-24 2.5E-29 156.7 7.5 209 41-259 10-222 (334)
117 KOG0268 Sof1-like rRNA process 99.9 7.1E-24 1.5E-28 159.9 12.0 224 13-254 81-349 (433)
118 KOG0646 WD40 repeat protein [G 99.9 5.8E-23 1.2E-27 159.5 17.2 209 13-235 95-332 (476)
119 KOG0268 Sof1-like rRNA process 99.9 1.8E-23 3.9E-28 157.8 13.8 208 37-255 58-307 (433)
120 KOG0299 U3 snoRNP-associated p 99.9 5.3E-23 1.2E-27 159.5 15.8 209 38-259 135-365 (479)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.1E-21 8.8E-26 152.0 26.7 223 17-256 7-243 (300)
122 KOG0300 WD40 repeat-containing 99.9 1.9E-22 4.1E-27 150.3 17.4 224 19-259 168-437 (481)
123 KOG2055 WD40 repeat protein [G 99.9 4.1E-22 8.9E-27 154.7 19.7 238 7-256 221-473 (514)
124 KOG1036 Mitotic spindle checkp 99.9 1.3E-21 2.8E-26 144.9 21.2 237 4-259 19-271 (323)
125 KOG0647 mRNA export protein (c 99.9 1.2E-21 2.6E-26 144.7 19.2 219 12-241 40-312 (347)
126 KOG0301 Phospholipase A2-activ 99.9 4.9E-22 1.1E-26 161.2 18.7 213 18-250 32-249 (745)
127 KOG0302 Ribosome Assembly prot 99.9 6.5E-22 1.4E-26 150.2 17.8 229 13-249 166-437 (440)
128 KOG2048 WD40 repeat protein [G 99.9 9.1E-21 2E-25 153.5 25.3 218 31-259 11-242 (691)
129 KOG1273 WD40 repeat protein [G 99.9 1.7E-22 3.8E-27 150.1 14.0 204 48-259 26-289 (405)
130 KOG2919 Guanine nucleotide-bin 99.9 1.2E-21 2.5E-26 146.2 17.2 226 7-243 119-361 (406)
131 KOG1274 WD40 repeat protein [G 99.9 2.6E-21 5.6E-26 161.6 21.0 209 13-238 68-286 (933)
132 KOG1539 WD repeat protein [Gen 99.9 1.2E-21 2.7E-26 161.9 18.9 195 44-251 447-649 (910)
133 KOG4283 Transcription-coupled 99.9 4.1E-21 8.9E-26 141.7 18.7 195 12-214 57-280 (397)
134 KOG0639 Transducin-like enhanc 99.9 2.2E-22 4.7E-27 158.1 12.5 226 8-249 474-703 (705)
135 KOG1273 WD40 repeat protein [G 99.9 1.8E-21 4E-26 144.7 16.3 231 10-252 34-324 (405)
136 KOG0307 Vesicle coat complex C 99.9 8.6E-23 1.9E-27 173.9 10.3 232 14-253 83-330 (1049)
137 KOG0641 WD40 repeat protein [G 99.9 8.8E-20 1.9E-24 130.1 23.2 205 41-250 132-349 (350)
138 KOG2055 WD40 repeat protein [G 99.9 6.7E-21 1.5E-25 148.1 18.4 198 44-251 212-418 (514)
139 KOG2106 Uncharacterized conser 99.9 1.6E-19 3.5E-24 142.0 26.1 236 2-252 203-479 (626)
140 KOG0303 Actin-binding protein 99.9 8.4E-21 1.8E-25 145.0 18.4 204 39-253 75-297 (472)
141 KOG0270 WD40 repeat-containing 99.9 4.1E-21 8.9E-26 148.5 15.3 204 42-255 240-454 (463)
142 KOG0294 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 140.4 16.6 188 65-259 4-206 (362)
143 KOG2445 Nuclear pore complex c 99.9 2E-19 4.3E-24 133.5 21.4 203 41-251 9-319 (361)
144 KOG4328 WD40 protein [Function 99.9 2.6E-20 5.6E-25 144.7 17.4 243 7-257 194-457 (498)
145 KOG1445 Tumor-specific antigen 99.9 2.1E-20 4.6E-25 151.0 15.8 124 137-262 628-762 (1012)
146 KOG2106 Uncharacterized conser 99.9 1E-18 2.2E-23 137.7 24.6 219 11-250 257-521 (626)
147 KOG0270 WD40 repeat-containing 99.9 4.2E-20 9.2E-25 143.0 15.9 183 65-254 195-408 (463)
148 KOG2919 Guanine nucleotide-bin 99.9 2E-19 4.4E-24 134.3 18.8 189 55-251 121-328 (406)
149 KOG1034 Transcriptional repres 99.8 2.3E-20 5E-25 139.5 12.8 226 14-249 108-382 (385)
150 KOG4378 Nuclear protein COP1 [ 99.8 7E-20 1.5E-24 143.9 15.8 194 49-254 83-284 (673)
151 KOG0642 Cell-cycle nuclear pro 99.8 3.5E-20 7.6E-25 147.4 14.2 214 40-259 289-570 (577)
152 KOG0307 Vesicle coat complex C 99.8 3.9E-21 8.5E-26 163.9 9.5 211 45-260 64-294 (1049)
153 KOG0321 WD40 repeat-containing 99.8 1E-19 2.2E-24 146.7 16.7 240 9-253 61-350 (720)
154 KOG1188 WD40 repeat protein [G 99.8 8.4E-20 1.8E-24 137.1 15.0 227 12-251 41-347 (376)
155 KOG4378 Nuclear protein COP1 [ 99.8 1.5E-19 3.1E-24 142.2 16.3 202 18-234 98-305 (673)
156 KOG0321 WD40 repeat-containing 99.8 3.5E-19 7.6E-24 143.7 18.6 237 12-254 112-395 (720)
157 KOG0771 Prolactin regulatory e 99.8 2.4E-19 5.2E-24 138.1 15.3 195 49-251 148-355 (398)
158 KOG4328 WD40 protein [Function 99.8 2.3E-19 5.1E-24 139.4 15.3 206 37-250 178-399 (498)
159 KOG1063 RNA polymerase II elon 99.8 6.2E-19 1.4E-23 143.5 16.9 210 41-250 521-763 (764)
160 KOG2110 Uncharacterized conser 99.8 9.6E-18 2.1E-22 127.4 22.0 183 65-254 61-252 (391)
161 KOG1538 Uncharacterized conser 99.8 1.2E-17 2.6E-22 136.1 23.5 229 9-253 22-296 (1081)
162 KOG1007 WD repeat protein TSSC 99.8 8.1E-19 1.8E-23 129.3 15.1 226 20-251 39-290 (370)
163 KOG1524 WD40 repeat-containing 99.8 3.9E-19 8.4E-24 141.1 14.4 202 12-245 76-281 (737)
164 KOG1009 Chromatin assembly com 99.8 6.4E-19 1.4E-23 135.1 15.2 191 44-241 12-249 (434)
165 KOG0650 WD40 repeat nucleolar 99.8 1.3E-18 2.8E-23 139.7 17.2 207 37-252 392-639 (733)
166 KOG1063 RNA polymerase II elon 99.8 1.2E-18 2.5E-23 141.9 17.1 225 20-252 337-650 (764)
167 KOG0649 WD40 repeat protein [G 99.8 3.2E-17 6.9E-22 118.2 22.3 222 12-251 23-275 (325)
168 COG2319 FOG: WD40 repeat [Gene 99.8 2.5E-16 5.4E-21 129.9 29.4 232 12-257 78-321 (466)
169 KOG1188 WD40 repeat protein [G 99.8 2E-18 4.4E-23 129.8 15.0 190 65-258 43-250 (376)
170 PF08662 eIF2A: Eukaryotic tra 99.8 1.2E-17 2.6E-22 122.6 19.0 150 96-254 11-183 (194)
171 KOG1009 Chromatin assembly com 99.8 1.6E-17 3.4E-22 127.6 19.6 144 15-167 30-196 (434)
172 PRK01742 tolB translocation pr 99.8 1.7E-17 3.7E-22 137.3 20.7 190 41-249 199-400 (429)
173 KOG0322 G-protein beta subunit 99.8 5.6E-18 1.2E-22 123.3 15.3 226 12-249 26-322 (323)
174 KOG0649 WD40 repeat protein [G 99.8 9.1E-18 2E-22 121.0 16.2 200 48-259 13-244 (325)
175 KOG1034 Transcriptional repres 99.8 2.4E-17 5.2E-22 123.5 18.0 206 44-255 88-342 (385)
176 KOG0303 Actin-binding protein 99.8 4.4E-18 9.5E-23 130.3 14.2 163 88-253 77-252 (472)
177 PRK03629 tolB translocation pr 99.8 2.1E-16 4.5E-21 130.6 24.6 202 41-254 194-410 (429)
178 KOG1007 WD repeat protein TSSC 99.8 2.8E-17 6E-22 121.3 16.2 196 43-250 121-361 (370)
179 KOG2394 WD40 protein DMR-N9 [G 99.8 4.1E-18 8.8E-23 135.2 12.5 198 13-232 187-384 (636)
180 PRK05137 tolB translocation pr 99.8 5.7E-16 1.2E-20 128.6 25.0 202 41-254 197-416 (435)
181 PRK11028 6-phosphogluconolacto 99.8 1.7E-15 3.6E-20 121.7 26.9 227 18-252 9-260 (330)
182 KOG0290 Conserved WD40 repeat- 99.8 6.9E-17 1.5E-21 119.3 16.7 208 43-253 94-321 (364)
183 KOG2110 Uncharacterized conser 99.8 3.1E-16 6.8E-21 119.3 20.1 137 71-211 105-249 (391)
184 COG2319 FOG: WD40 repeat [Gene 99.8 3.1E-15 6.7E-20 123.3 28.0 218 20-253 133-362 (466)
185 PRK11028 6-phosphogluconolacto 99.8 2.7E-15 5.8E-20 120.5 26.5 198 47-250 81-304 (330)
186 PRK04922 tolB translocation pr 99.8 4.1E-16 8.9E-21 129.3 21.5 201 41-253 199-414 (433)
187 KOG1587 Cytoplasmic dynein int 99.7 3.7E-16 7.9E-21 129.6 20.0 238 9-251 252-517 (555)
188 KOG1517 Guanine nucleotide bin 99.7 2.3E-16 5E-21 134.4 19.0 232 14-253 1126-1384(1387)
189 KOG1272 WD40-repeat-containing 99.7 2.3E-18 4.9E-23 134.4 6.5 198 49-260 133-333 (545)
190 KOG2139 WD40 repeat protein [G 99.7 3.9E-16 8.4E-21 118.6 18.1 195 46-251 99-310 (445)
191 KOG1523 Actin-related protein 99.7 2.8E-16 6E-21 117.5 16.2 206 41-253 6-239 (361)
192 KOG1445 Tumor-specific antigen 99.7 2.5E-16 5.5E-21 127.8 17.2 225 20-253 54-296 (1012)
193 PRK02889 tolB translocation pr 99.7 3E-15 6.5E-20 123.8 23.9 199 41-251 191-404 (427)
194 KOG1408 WD40 repeat protein [F 99.7 2.8E-16 6.1E-21 129.0 16.7 193 7-211 467-714 (1080)
195 KOG1524 WD40 repeat-containing 99.7 1.1E-16 2.5E-21 127.3 13.7 227 10-253 24-258 (737)
196 KOG1523 Actin-related protein 99.7 5.3E-16 1.2E-20 116.0 16.1 221 12-240 23-267 (361)
197 KOG0642 Cell-cycle nuclear pro 99.7 2.5E-16 5.4E-21 125.7 14.8 207 9-222 304-573 (577)
198 KOG0644 Uncharacterized conser 99.7 1.5E-17 3.2E-22 138.4 8.0 198 41-253 186-471 (1113)
199 KOG1538 Uncharacterized conser 99.7 1.2E-15 2.6E-20 124.6 18.6 197 47-251 14-253 (1081)
200 PRK01742 tolB translocation pr 99.7 1E-15 2.2E-20 126.8 18.6 172 71-254 183-365 (429)
201 KOG3881 Uncharacterized conser 99.7 1.9E-15 4.1E-20 115.9 18.1 185 65-255 118-325 (412)
202 KOG2445 Nuclear pore complex c 99.7 2.2E-15 4.7E-20 112.2 17.9 159 93-253 16-259 (361)
203 KOG4547 WD40 repeat-containing 99.7 3.2E-15 6.8E-20 120.2 19.7 181 65-251 8-221 (541)
204 KOG1310 WD40 repeat protein [G 99.7 1.5E-16 3.3E-21 126.9 12.1 212 39-255 44-308 (758)
205 KOG0771 Prolactin regulatory e 99.7 1.5E-16 3.2E-21 122.9 11.2 160 94-259 148-320 (398)
206 KOG1240 Protein kinase contain 99.7 1.5E-15 3.3E-20 131.2 18.3 217 36-257 1039-1280(1431)
207 PF08662 eIF2A: Eukaryotic tra 99.7 3.9E-15 8.5E-20 109.4 17.9 155 50-218 10-186 (194)
208 KOG3881 Uncharacterized conser 99.7 5.3E-15 1.1E-19 113.5 17.9 211 12-235 116-344 (412)
209 PRK03629 tolB translocation pr 99.7 8.3E-15 1.8E-19 121.1 20.7 173 47-233 244-428 (429)
210 TIGR02800 propeller_TolB tol-p 99.7 3E-14 6.6E-19 118.1 24.0 200 41-252 185-399 (417)
211 KOG2111 Uncharacterized conser 99.7 3.6E-14 7.9E-19 106.3 21.2 179 71-256 74-262 (346)
212 KOG1963 WD40 repeat protein [G 99.7 8E-15 1.7E-19 122.8 19.7 237 11-257 27-329 (792)
213 PRK00178 tolB translocation pr 99.7 5.5E-14 1.2E-18 116.9 24.7 201 41-253 194-409 (430)
214 PRK01029 tolB translocation pr 99.7 4.5E-14 9.7E-19 116.5 23.9 206 44-255 183-408 (428)
215 PF02239 Cytochrom_D1: Cytochr 99.7 7.7E-14 1.7E-18 112.4 24.0 231 18-259 13-356 (369)
216 KOG0650 WD40 repeat nucleolar 99.7 9.5E-16 2.1E-20 123.4 12.4 197 42-247 518-732 (733)
217 KOG1963 WD40 repeat protein [G 99.7 7E-14 1.5E-18 117.3 23.1 239 6-251 211-539 (792)
218 KOG4227 WD40 repeat protein [G 99.7 3.9E-15 8.4E-20 114.6 14.1 209 39-254 50-278 (609)
219 KOG1517 Guanine nucleotide bin 99.7 3E-14 6.5E-19 121.8 20.7 237 9-256 1074-1339(1387)
220 KOG1272 WD40-repeat-containing 99.6 1E-15 2.2E-20 119.8 10.0 218 12-248 142-360 (545)
221 PRK04792 tolB translocation pr 99.6 8.9E-14 1.9E-18 115.5 21.8 196 43-252 215-427 (448)
222 KOG0322 G-protein beta subunit 99.6 1.2E-15 2.6E-20 111.3 9.1 141 65-209 168-322 (323)
223 KOG0290 Conserved WD40 repeat- 99.6 3.2E-14 6.9E-19 105.4 16.2 195 44-246 149-361 (364)
224 KOG2111 Uncharacterized conser 99.6 1.4E-13 3.1E-18 103.1 19.8 176 21-211 75-257 (346)
225 KOG2321 WD40 repeat protein [G 99.6 2.4E-14 5.3E-19 115.0 16.2 208 44-259 50-311 (703)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 6.3E-15 1.4E-19 117.4 12.8 187 71-257 143-369 (636)
227 PRK05137 tolB translocation pr 99.6 1.7E-13 3.6E-18 114.0 21.6 173 71-253 181-369 (435)
228 PRK04922 tolB translocation pr 99.6 1.1E-13 2.3E-18 115.0 20.4 205 9-232 213-432 (433)
229 KOG1587 Cytoplasmic dynein int 99.6 9.5E-14 2.1E-18 115.4 19.7 223 21-254 222-476 (555)
230 PRK02889 tolB translocation pr 99.6 1.3E-13 2.8E-18 114.1 19.5 175 72-255 176-365 (427)
231 PF02239 Cytochrom_D1: Cytochr 99.6 8E-13 1.7E-17 106.6 22.4 186 66-257 10-209 (369)
232 KOG4497 Uncharacterized conser 99.6 2.8E-14 6.2E-19 107.5 12.9 231 16-267 66-368 (447)
233 PF10282 Lactonase: Lactonase, 99.6 2E-11 4.4E-16 98.4 29.7 205 46-255 87-329 (345)
234 KOG4227 WD40 repeat protein [G 99.6 4.6E-13 1E-17 103.3 18.8 234 11-251 68-388 (609)
235 KOG1334 WD40 repeat protein [G 99.6 2.3E-14 4.9E-19 113.0 11.4 231 18-253 206-469 (559)
236 TIGR02658 TTQ_MADH_Hv methylam 99.6 1.6E-11 3.4E-16 97.2 26.4 224 21-258 27-338 (352)
237 TIGR02800 propeller_TolB tol-p 99.6 1.2E-12 2.7E-17 108.5 21.4 175 71-254 169-358 (417)
238 KOG2139 WD40 repeat protein [G 99.6 4.1E-13 8.9E-18 102.4 16.2 196 44-252 139-385 (445)
239 KOG0974 WD-repeat protein WDR6 99.6 2.3E-13 5.1E-18 116.1 15.9 186 65-259 102-297 (967)
240 PRK04043 tolB translocation pr 99.6 5.6E-12 1.2E-16 103.5 23.5 194 47-254 189-404 (419)
241 KOG2315 Predicted translation 99.5 2.7E-12 5.8E-17 103.1 20.4 111 137-254 271-394 (566)
242 KOG4497 Uncharacterized conser 99.5 2.4E-14 5.2E-19 107.9 8.1 188 50-251 13-241 (447)
243 PRK00178 tolB translocation pr 99.5 4.2E-12 9.2E-17 105.6 21.6 173 73-254 180-367 (430)
244 PRK04792 tolB translocation pr 99.5 9.7E-12 2.1E-16 103.5 21.1 173 73-254 199-386 (448)
245 KOG1310 WD40 repeat protein [G 99.5 1.5E-13 3.2E-18 110.2 9.3 161 85-250 43-231 (758)
246 PRK01029 tolB translocation pr 99.5 9.7E-12 2.1E-16 102.7 20.3 177 72-255 165-364 (428)
247 PF10282 Lactonase: Lactonase, 99.5 4.6E-10 9.9E-15 90.6 29.2 202 46-250 37-275 (345)
248 KOG2321 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 104.7 14.4 185 13-213 147-346 (703)
249 KOG4547 WD40 repeat-containing 99.5 3.2E-12 7E-17 103.2 16.0 165 100-266 3-190 (541)
250 KOG1064 RAVE (regulator of V-A 99.5 3.4E-13 7.3E-18 121.0 11.1 192 42-259 2205-2407(2439)
251 COG2706 3-carboxymuconate cycl 99.5 1.9E-10 4.1E-15 88.3 24.4 205 43-251 37-275 (346)
252 KOG1354 Serine/threonine prote 99.4 7.8E-12 1.7E-16 95.0 15.2 202 44-251 24-302 (433)
253 KOG1240 Protein kinase contain 99.4 7.3E-12 1.6E-16 109.1 16.7 182 77-259 1034-1234(1431)
254 KOG1409 Uncharacterized conser 99.4 5.3E-12 1.2E-16 95.8 13.5 217 33-256 12-276 (404)
255 KOG4532 WD40-like repeat conta 99.4 7.7E-11 1.7E-15 86.9 17.7 187 65-256 87-288 (344)
256 KOG4190 Uncharacterized conser 99.4 1.4E-12 3.1E-17 105.1 8.5 214 36-259 726-957 (1034)
257 KOG1354 Serine/threonine prote 99.4 2.2E-10 4.7E-15 87.3 19.4 238 11-254 37-363 (433)
258 COG4946 Uncharacterized protei 99.4 3.1E-10 6.8E-15 90.1 20.5 186 54-255 275-482 (668)
259 KOG1334 WD40 repeat protein [G 99.4 1E-11 2.2E-16 98.3 11.1 207 39-251 136-367 (559)
260 PLN02919 haloacid dehalogenase 99.4 4.1E-09 8.8E-14 95.9 29.2 199 48-254 626-892 (1057)
261 KOG0644 Uncharacterized conser 99.4 3.5E-13 7.5E-18 112.9 2.9 115 131-250 185-300 (1113)
262 COG4946 Uncharacterized protei 99.3 4E-10 8.7E-15 89.5 19.6 163 71-241 340-507 (668)
263 KOG2695 WD40 repeat protein [G 99.3 7E-12 1.5E-16 95.3 9.3 165 67-231 229-401 (425)
264 KOG0974 WD-repeat protein WDR6 99.3 3.4E-11 7.3E-16 103.3 14.4 140 65-211 148-289 (967)
265 KOG4532 WD40-like repeat conta 99.3 1E-09 2.3E-14 81.0 19.2 187 65-252 131-333 (344)
266 COG2706 3-carboxymuconate cycl 99.3 2.2E-08 4.7E-13 77.2 26.8 202 49-255 92-328 (346)
267 KOG0280 Uncharacterized conser 99.3 4.5E-10 9.8E-15 83.8 16.6 194 49-253 125-336 (339)
268 KOG1409 Uncharacterized conser 99.3 4.3E-10 9.3E-15 85.7 16.4 193 8-211 77-271 (404)
269 KOG3914 WD repeat protein WDR4 99.3 1.1E-10 2.5E-15 90.4 13.2 157 96-259 68-232 (390)
270 PRK04043 tolB translocation pr 99.3 3.1E-09 6.8E-14 87.5 22.5 171 73-254 170-361 (419)
271 KOG0280 Uncharacterized conser 99.3 6.6E-10 1.4E-14 83.0 16.5 185 65-254 88-288 (339)
272 KOG2315 Predicted translation 99.3 3.1E-10 6.7E-15 91.5 15.1 168 51-233 223-411 (566)
273 PF07433 DUF1513: Protein of u 99.2 7.4E-09 1.6E-13 79.6 21.1 202 49-259 8-256 (305)
274 KOG1064 RAVE (regulator of V-A 99.2 4.4E-11 9.6E-16 107.9 9.3 189 5-219 2214-2407(2439)
275 PF07433 DUF1513: Protein of u 99.2 4.8E-08 1E-12 75.2 24.3 192 51-249 56-284 (305)
276 KOG2314 Translation initiation 99.2 1E-09 2.2E-14 88.7 15.4 200 47-254 251-577 (698)
277 COG5170 CDC55 Serine/threonine 99.2 7.9E-10 1.7E-14 83.4 12.5 203 45-253 26-312 (460)
278 PF13360 PQQ_2: PQQ-like domai 99.2 4.4E-08 9.6E-13 74.9 22.5 182 65-254 39-234 (238)
279 PF08450 SGL: SMP-30/Gluconola 99.2 3.3E-07 7.1E-12 70.6 26.9 209 9-238 9-241 (246)
280 PF04762 IKI3: IKI3 family; I 99.2 3.8E-08 8.2E-13 88.3 24.4 199 44-252 74-335 (928)
281 KOG1275 PAB-dependent poly(A) 99.2 1.1E-09 2.4E-14 93.3 13.7 176 65-249 150-341 (1118)
282 PF15492 Nbas_N: Neuroblastoma 99.2 4.8E-08 1E-12 73.2 20.8 208 7-220 4-269 (282)
283 PF04762 IKI3: IKI3 family; I 99.2 2.1E-08 4.6E-13 89.8 22.6 217 6-235 82-361 (928)
284 KOG3914 WD repeat protein WDR4 99.1 7.9E-10 1.7E-14 85.8 11.6 158 48-218 65-231 (390)
285 TIGR02658 TTQ_MADH_Hv methylam 99.1 8.2E-08 1.8E-12 76.4 22.3 185 72-259 27-296 (352)
286 PF15492 Nbas_N: Neuroblastoma 99.1 8.3E-08 1.8E-12 71.9 20.4 203 51-259 3-268 (282)
287 PF08450 SGL: SMP-30/Gluconola 99.1 1.8E-07 3.8E-12 72.1 22.6 196 50-258 4-220 (246)
288 KOG0882 Cyclophilin-related pe 99.1 3.9E-09 8.5E-14 83.3 12.5 231 20-258 29-313 (558)
289 COG5354 Uncharacterized protei 99.1 7.8E-08 1.7E-12 77.3 19.7 203 41-252 28-308 (561)
290 PLN02919 haloacid dehalogenase 99.1 1.8E-07 3.9E-12 85.5 24.5 196 50-255 572-838 (1057)
291 TIGR03300 assembly_YfgL outer 99.0 6.8E-08 1.5E-12 79.2 19.8 180 65-258 148-346 (377)
292 TIGR03300 assembly_YfgL outer 99.0 1.5E-07 3.2E-12 77.3 21.2 219 12-255 66-302 (377)
293 COG5354 Uncharacterized protei 99.0 9.9E-08 2.1E-12 76.7 19.1 198 46-255 174-400 (561)
294 KOG2041 WD40 repeat protein [G 99.0 3E-09 6.4E-14 88.7 9.3 157 93-252 17-188 (1189)
295 KOG1832 HIV-1 Vpr-binding prot 99.0 1.5E-10 3.2E-15 98.4 1.7 201 37-258 1093-1299(1516)
296 COG0823 TolB Periplasmic compo 99.0 3.1E-08 6.8E-13 81.2 14.9 191 41-241 188-388 (425)
297 KOG4714 Nucleoporin [Nuclear s 99.0 9.9E-09 2.1E-13 75.6 10.5 162 39-211 83-255 (319)
298 KOG2066 Vacuolar assembly/sort 99.0 3.8E-08 8.2E-13 83.1 15.1 171 65-250 52-233 (846)
299 KOG2314 Translation initiation 99.0 4.2E-08 9E-13 79.6 14.7 195 48-253 213-436 (698)
300 KOG2041 WD40 repeat protein [G 99.0 3.2E-08 7E-13 82.8 14.3 218 13-241 28-277 (1189)
301 KOG0309 Conserved WD40 repeat- 99.0 5.8E-09 1.3E-13 87.2 9.9 229 14-251 84-340 (1081)
302 KOG2695 WD40 repeat protein [G 98.9 5.8E-09 1.3E-13 79.8 8.7 166 85-259 206-385 (425)
303 PF13360 PQQ_2: PQQ-like domai 98.9 2.2E-07 4.8E-12 71.1 17.8 177 71-254 2-195 (238)
304 KOG4190 Uncharacterized conser 98.9 6.7E-09 1.5E-13 84.3 9.2 170 85-256 728-912 (1034)
305 KOG0309 Conserved WD40 repeat- 98.9 5.5E-08 1.2E-12 81.6 12.4 200 45-253 24-235 (1081)
306 KOG4714 Nucleoporin [Nuclear s 98.8 1.4E-08 3E-13 74.8 7.5 150 97-251 96-255 (319)
307 PF00400 WD40: WD domain, G-be 98.8 2E-08 4.4E-13 53.3 6.4 36 129-164 4-39 (39)
308 PF00400 WD40: WD domain, G-be 98.8 1.6E-08 3.4E-13 53.7 5.6 39 168-208 1-39 (39)
309 PRK02888 nitrous-oxide reducta 98.8 5.8E-07 1.2E-11 75.6 16.6 178 53-241 200-450 (635)
310 PF11768 DUF3312: Protein of u 98.8 2.4E-06 5.2E-11 70.4 19.3 112 95-211 210-330 (545)
311 PF11768 DUF3312: Protein of u 98.8 1.7E-06 3.6E-11 71.3 17.5 72 92-169 261-332 (545)
312 PRK11138 outer membrane biogen 98.7 2.1E-06 4.5E-11 70.9 18.2 225 12-258 121-361 (394)
313 COG0823 TolB Periplasmic compo 98.7 1.1E-06 2.4E-11 72.3 16.1 152 93-253 195-361 (425)
314 KOG2114 Vacuolar assembly/sort 98.7 2.7E-06 5.8E-11 72.9 18.4 198 52-255 30-248 (933)
315 KOG1912 WD40 repeat protein [G 98.7 4.4E-06 9.6E-11 71.0 19.4 224 20-251 34-305 (1062)
316 KOG1920 IkappaB kinase complex 98.7 6.7E-06 1.5E-10 73.0 20.9 189 8-212 77-324 (1265)
317 KOG1645 RING-finger-containing 98.7 9.8E-07 2.1E-11 69.2 14.1 213 39-259 187-428 (463)
318 PF06977 SdiA-regulated: SdiA- 98.7 1.2E-05 2.7E-10 61.1 19.1 203 39-247 15-247 (248)
319 KOG1275 PAB-dependent poly(A) 98.6 8.1E-07 1.7E-11 76.5 13.1 138 65-208 190-340 (1118)
320 KOG0882 Cyclophilin-related pe 98.6 2.6E-07 5.7E-12 73.3 9.4 207 44-261 8-242 (558)
321 PRK11138 outer membrane biogen 98.6 2.6E-05 5.7E-10 64.4 21.7 215 12-249 161-393 (394)
322 KOG2066 Vacuolar assembly/sort 98.6 1.9E-06 4.2E-11 73.2 14.8 147 93-259 42-196 (846)
323 COG3391 Uncharacterized conser 98.6 4.1E-05 9E-10 62.8 21.9 198 48-257 76-290 (381)
324 KOG2114 Vacuolar assembly/sort 98.6 3.7E-05 8.1E-10 66.2 20.6 202 9-223 33-257 (933)
325 PF08553 VID27: VID27 cytoplas 98.6 4.9E-06 1.1E-10 72.6 15.8 138 67-209 499-646 (794)
326 KOG1920 IkappaB kinase complex 98.5 8.9E-06 1.9E-10 72.3 17.1 198 46-252 69-324 (1265)
327 COG5170 CDC55 Serine/threonine 98.5 7.8E-06 1.7E-10 62.3 14.4 153 93-248 175-365 (460)
328 KOG3621 WD40 repeat-containing 98.5 1.7E-06 3.8E-11 72.5 10.9 117 45-167 33-155 (726)
329 KOG1832 HIV-1 Vpr-binding prot 98.5 8.4E-08 1.8E-12 82.2 3.2 157 86-255 1095-1260(1516)
330 KOG1912 WD40 repeat protein [G 98.5 6.3E-06 1.4E-10 70.1 13.8 150 92-249 17-185 (1062)
331 PF06433 Me-amine-dh_H: Methyl 98.5 9.6E-05 2.1E-09 58.1 19.3 185 72-259 118-329 (342)
332 KOG1008 Uncharacterized conser 98.5 8.5E-08 1.8E-12 79.3 2.7 197 46-251 57-276 (783)
333 cd00216 PQQ_DH Dehydrogenases 98.4 0.00042 9.2E-09 58.9 23.8 230 12-259 111-433 (488)
334 PF04053 Coatomer_WDAD: Coatom 98.4 1.7E-05 3.7E-10 65.6 14.9 140 93-252 35-175 (443)
335 KOG3621 WD40 repeat-containing 98.4 2.4E-06 5.2E-11 71.7 9.8 157 93-253 36-200 (726)
336 PRK13616 lipoprotein LpqB; Pro 98.4 6.3E-05 1.4E-09 64.7 18.3 182 46-241 350-558 (591)
337 PF04053 Coatomer_WDAD: Coatom 98.4 3.9E-05 8.5E-10 63.6 16.3 178 43-246 30-219 (443)
338 COG3386 Gluconolactonase [Carb 98.4 0.00055 1.2E-08 54.0 21.5 205 18-241 44-274 (307)
339 PRK02888 nitrous-oxide reducta 98.4 0.00011 2.3E-09 62.4 18.3 184 65-254 69-355 (635)
340 KOG3617 WD40 and TPR repeat-co 98.3 1.3E-06 2.8E-11 74.9 6.8 107 140-250 19-131 (1416)
341 COG3490 Uncharacterized protei 98.3 0.00011 2.4E-09 55.7 15.5 204 49-259 71-319 (366)
342 KOG4640 Anaphase-promoting com 98.3 6.7E-06 1.5E-10 68.3 9.2 93 137-232 21-115 (665)
343 PF02897 Peptidase_S9_N: Proly 98.3 0.00078 1.7E-08 56.1 21.4 197 48-250 126-357 (414)
344 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0001 2.2E-09 59.9 15.6 149 99-254 1-222 (353)
345 KOG4640 Anaphase-promoting com 98.2 7.6E-06 1.7E-10 67.9 8.9 92 93-190 23-115 (665)
346 KOG3617 WD40 and TPR repeat-co 98.2 4.4E-06 9.5E-11 71.8 7.6 113 48-166 18-131 (1416)
347 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00012 2.6E-09 59.6 15.2 181 69-253 20-271 (353)
348 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0011 2.4E-08 49.8 17.9 142 96-245 16-160 (354)
349 PF08553 VID27: VID27 cytoplas 98.2 9.6E-05 2.1E-09 64.9 14.5 142 102-250 493-647 (794)
350 cd00216 PQQ_DH Dehydrogenases 98.2 0.00057 1.2E-08 58.1 18.8 192 12-219 62-328 (488)
351 PF05096 Glu_cyclase_2: Glutam 98.1 0.0018 3.9E-08 49.4 22.3 191 36-240 34-249 (264)
352 KOG1645 RING-finger-containing 98.1 1.4E-05 3E-10 63.0 7.4 131 114-251 175-316 (463)
353 PF06433 Me-amine-dh_H: Methyl 98.1 0.0027 5.9E-08 50.2 19.8 175 72-253 17-216 (342)
354 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0019 4.1E-08 48.6 16.9 135 65-206 26-161 (354)
355 PF08596 Lgl_C: Lethal giant l 98.0 0.0011 2.3E-08 54.5 17.3 201 41-249 82-334 (395)
356 KOG1008 Uncharacterized conser 98.0 1.4E-06 3E-11 72.3 0.8 153 92-249 58-224 (783)
357 PF03178 CPSF_A: CPSF A subuni 98.0 0.0045 9.7E-08 49.7 20.6 174 72-251 2-203 (321)
358 COG3391 Uncharacterized conser 98.0 0.0056 1.2E-07 50.4 23.2 180 47-233 117-309 (381)
359 PRK13616 lipoprotein LpqB; Pro 98.0 0.00066 1.4E-08 58.6 16.3 146 93-251 352-528 (591)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.008 1.7E-07 51.6 23.8 241 12-259 121-499 (527)
361 KOG2395 Protein involved in va 97.9 0.00036 7.8E-09 57.4 12.2 146 99-250 342-500 (644)
362 PF00780 CNH: CNH domain; Int 97.9 0.0077 1.7E-07 47.2 22.8 229 9-263 5-268 (275)
363 COG3386 Gluconolactonase [Carb 97.9 0.0027 5.9E-08 50.2 16.4 185 67-259 42-251 (307)
364 PF12234 Rav1p_C: RAVE protein 97.9 0.0017 3.7E-08 55.8 16.1 115 137-252 30-158 (631)
365 COG3490 Uncharacterized protei 97.9 0.0013 2.9E-08 50.1 13.7 110 138-247 69-186 (366)
366 PF02897 Peptidase_S9_N: Proly 97.8 0.0045 9.8E-08 51.6 17.9 152 96-253 129-312 (414)
367 smart00320 WD40 WD40 repeats. 97.8 0.00014 3E-09 37.3 5.7 38 169-208 3-40 (40)
368 PF10647 Gmad1: Lipoprotein Lp 97.8 0.011 2.4E-07 45.7 18.1 143 92-241 25-184 (253)
369 smart00320 WD40 WD40 repeats. 97.7 0.00014 3E-09 37.3 5.4 36 129-164 5-40 (40)
370 PF04841 Vps16_N: Vps16, N-ter 97.7 0.019 4.1E-07 47.7 24.2 187 46-247 81-284 (410)
371 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0045 9.7E-08 40.5 13.1 96 97-205 9-109 (111)
372 KOG2079 Vacuolar assembly/sort 97.7 0.00025 5.5E-09 62.9 9.2 109 96-209 93-202 (1206)
373 PF05694 SBP56: 56kDa selenium 97.7 0.01 2.2E-07 48.4 17.0 185 66-252 92-344 (461)
374 PF00780 CNH: CNH domain; Int 97.7 0.0057 1.2E-07 47.9 15.7 147 100-256 5-171 (275)
375 KOG2395 Protein involved in va 97.6 0.0017 3.6E-08 53.6 12.0 138 65-209 349-499 (644)
376 PF05694 SBP56: 56kDa selenium 97.6 0.02 4.3E-07 46.9 17.8 222 17-241 94-392 (461)
377 PF04841 Vps16_N: Vps16, N-ter 97.6 0.016 3.5E-07 48.1 18.1 177 73-259 62-255 (410)
378 KOG4499 Ca2+-binding protein R 97.6 0.015 3.3E-07 43.3 16.2 133 94-232 112-263 (310)
379 PF14583 Pectate_lyase22: Olig 97.6 0.026 5.7E-07 45.6 20.1 211 12-239 48-299 (386)
380 KOG2079 Vacuolar assembly/sort 97.5 0.00054 1.2E-08 60.9 8.3 103 147-250 98-203 (1206)
381 TIGR02604 Piru_Ver_Nterm putat 97.5 0.018 3.8E-07 47.3 16.6 145 93-241 16-202 (367)
382 PHA02713 hypothetical protein; 97.5 0.017 3.7E-07 50.0 17.0 174 72-253 320-536 (557)
383 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.012 2.6E-07 38.5 14.3 85 139-232 2-90 (111)
384 PF14583 Pectate_lyase22: Olig 97.4 0.042 9.2E-07 44.5 22.8 174 67-247 163-378 (386)
385 KOG2444 WD40 repeat protein [G 97.4 0.00021 4.5E-09 52.4 4.1 141 105-252 33-179 (238)
386 PF12894 Apc4_WD40: Anaphase-p 97.4 0.0012 2.5E-08 36.1 5.8 34 136-170 11-44 (47)
387 KOG2444 WD40 repeat protein [G 97.4 0.00083 1.8E-08 49.4 6.6 139 65-210 33-177 (238)
388 PF08596 Lgl_C: Lethal giant l 97.4 0.009 2E-07 49.1 13.2 124 132-256 82-249 (395)
389 PF15390 DUF4613: Domain of un 97.3 0.055 1.2E-06 45.8 16.8 118 134-252 54-188 (671)
390 PF06977 SdiA-regulated: SdiA- 97.3 0.052 1.1E-06 41.6 17.1 153 93-249 24-200 (248)
391 PHA03098 kelch-like protein; P 97.2 0.033 7.2E-07 48.2 16.3 174 73-254 312-515 (534)
392 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.12 2.5E-06 44.7 20.3 183 65-255 72-338 (527)
393 KOG4441 Proteins containing BT 97.2 0.066 1.4E-06 46.6 17.6 182 65-255 336-551 (571)
394 TIGR03074 PQQ_membr_DH membran 97.2 0.16 3.5E-06 45.6 20.9 190 65-259 197-486 (764)
395 PF03178 CPSF_A: CPSF A subuni 97.2 0.085 1.8E-06 42.4 23.4 134 72-210 62-202 (321)
396 PRK10115 protease 2; Provision 97.2 0.16 3.5E-06 45.3 22.7 201 47-253 128-349 (686)
397 PF10647 Gmad1: Lipoprotein Lp 97.1 0.077 1.7E-06 41.0 19.7 151 47-202 25-187 (253)
398 PF13449 Phytase-like: Esteras 97.1 0.11 2.3E-06 42.0 17.0 147 92-239 21-231 (326)
399 COG5167 VID27 Protein involved 97.1 0.016 3.5E-07 48.0 11.8 139 65-210 483-632 (776)
400 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0032 7E-08 34.3 5.5 33 181-214 12-44 (47)
401 COG3204 Uncharacterized protei 97.1 0.094 2E-06 40.6 18.6 202 41-248 81-310 (316)
402 KOG1897 Damage-specific DNA bi 96.8 0.34 7.5E-06 43.7 21.7 159 96-259 676-865 (1096)
403 PF14870 PSII_BNR: Photosynthe 96.8 0.17 3.7E-06 40.1 24.7 117 133-253 141-263 (302)
404 TIGR03074 PQQ_membr_DH membran 96.8 0.37 8E-06 43.4 21.9 150 65-218 263-485 (764)
405 PF12234 Rav1p_C: RAVE protein 96.8 0.15 3.2E-06 44.4 15.6 109 96-209 35-155 (631)
406 KOG1897 Damage-specific DNA bi 96.8 0.38 8.3E-06 43.4 18.1 171 73-251 751-943 (1096)
407 PHA02713 hypothetical protein; 96.7 0.055 1.2E-06 47.0 12.9 149 65-221 355-544 (557)
408 KOG2377 Uncharacterized conser 96.7 0.068 1.5E-06 43.9 12.2 141 96-240 28-171 (657)
409 KOG4499 Ca2+-binding protein R 96.7 0.17 3.6E-06 38.0 15.7 138 45-189 108-262 (310)
410 PF05096 Glu_cyclase_2: Glutam 96.7 0.2 4.3E-06 38.5 17.2 153 96-258 50-211 (264)
411 KOG4441 Proteins containing BT 96.7 0.14 2.9E-06 44.7 14.9 174 72-254 301-503 (571)
412 PF10313 DUF2415: Uncharacteri 96.4 0.023 5E-07 30.1 5.5 31 137-167 1-34 (43)
413 PHA02790 Kelch-like protein; P 96.4 0.39 8.4E-06 41.1 15.7 178 65-253 275-473 (480)
414 PHA03098 kelch-like protein; P 96.2 0.64 1.4E-05 40.3 16.5 143 65-213 346-514 (534)
415 PRK13684 Ycf48-like protein; P 96.1 0.56 1.2E-05 38.0 16.0 149 94-249 176-330 (334)
416 COG3204 Uncharacterized protei 96.1 0.46 9.9E-06 37.0 15.6 156 93-251 88-264 (316)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 0.14 3E-06 42.4 11.1 83 136-219 307-407 (415)
418 COG5167 VID27 Protein involved 96.1 0.24 5.3E-06 41.5 12.2 149 96-251 473-633 (776)
419 TIGR03118 PEPCTERM_chp_1 conse 96.0 0.55 1.2E-05 36.8 19.8 206 47-259 24-288 (336)
420 PF08728 CRT10: CRT10; InterP 96.0 0.92 2E-05 40.2 16.1 149 96-249 44-245 (717)
421 PF07569 Hira: TUP1-like enhan 95.9 0.064 1.4E-06 40.4 7.8 67 186-252 16-97 (219)
422 COG3823 Glutamine cyclotransfe 95.8 0.49 1.1E-05 34.9 13.8 163 71-241 67-248 (262)
423 KOG1916 Nuclear protein, conta 95.8 0.015 3.2E-07 51.4 4.7 139 71-215 152-328 (1283)
424 PF07250 Glyoxal_oxid_N: Glyox 95.8 0.37 8.1E-06 36.8 11.5 141 114-258 48-205 (243)
425 PF10313 DUF2415: Uncharacteri 95.7 0.076 1.7E-06 28.1 5.3 30 182-211 2-34 (43)
426 KOG3630 Nuclear pore complex, 95.7 0.12 2.6E-06 47.2 9.6 142 96-241 106-262 (1405)
427 PF15390 DUF4613: Domain of un 95.6 0.31 6.7E-06 41.6 11.4 117 45-165 56-185 (671)
428 PF14870 PSII_BNR: Photosynthe 95.6 0.89 1.9E-05 36.1 24.1 148 93-247 147-301 (302)
429 PF14781 BBS2_N: Ciliary BBSom 95.6 0.44 9.4E-06 32.5 11.6 107 142-253 4-128 (136)
430 TIGR03606 non_repeat_PQQ dehyd 95.6 1.2 2.6E-05 37.5 18.6 110 92-201 31-166 (454)
431 TIGR02604 Piru_Ver_Nterm putat 95.5 1.1 2.4E-05 36.8 16.4 143 48-201 16-204 (367)
432 KOG3630 Nuclear pore complex, 95.5 0.2 4.3E-06 45.9 10.4 144 46-197 101-260 (1405)
433 KOG2247 WD40 repeat-containing 95.2 0.0021 4.6E-08 52.6 -2.1 136 96-240 40-177 (615)
434 PF10168 Nup88: Nuclear pore c 95.2 0.78 1.7E-05 41.1 13.3 76 137-213 85-182 (717)
435 PF05935 Arylsulfotrans: Aryls 95.2 1.8 3.9E-05 37.1 16.5 145 70-221 126-312 (477)
436 COG4590 ABC-type uncharacteriz 95.2 0.2 4.4E-06 41.3 8.7 158 94-255 224-391 (733)
437 PF07995 GSDH: Glucose / Sorbo 95.1 0.78 1.7E-05 37.1 12.2 107 93-200 4-133 (331)
438 KOG4460 Nuclear pore complex, 95.1 1.2 2.5E-05 37.8 12.9 82 138-219 105-207 (741)
439 PF03022 MRJP: Major royal jel 94.9 1.5 3.2E-05 34.7 18.8 167 72-241 34-254 (287)
440 PF07569 Hira: TUP1-like enhan 94.9 0.42 9.2E-06 36.1 9.3 75 94-169 14-98 (219)
441 KOG1898 Splicing factor 3b, su 94.8 2.3 5.1E-05 39.1 14.8 110 3-117 541-668 (1205)
442 PHA02790 Kelch-like protein; P 94.8 1.9 4.1E-05 37.0 14.2 139 65-212 322-472 (480)
443 PF12657 TFIIIC_delta: Transcr 94.7 0.46 1E-05 34.4 9.0 30 138-167 87-122 (173)
444 PF07995 GSDH: Glucose / Sorbo 94.6 1.7 3.6E-05 35.3 12.8 102 138-241 3-132 (331)
445 TIGR02276 beta_rpt_yvtn 40-res 94.5 0.24 5.2E-06 25.9 5.5 40 190-230 1-41 (42)
446 KOG1898 Splicing factor 3b, su 94.5 3.9 8.4E-05 37.8 17.4 172 73-254 854-1052(1205)
447 PF14761 HPS3_N: Hermansky-Pud 94.5 1.5 3.2E-05 32.7 12.9 103 149-254 29-167 (215)
448 PF08728 CRT10: CRT10; InterP 94.4 1.4 3.1E-05 39.1 12.5 106 101-209 113-245 (717)
449 PF14727 PHTB1_N: PTHB1 N-term 94.4 2.6 5.6E-05 35.2 18.3 148 102-251 37-205 (418)
450 KOG4460 Nuclear pore complex, 94.4 1.4 3.1E-05 37.2 11.7 76 183-258 106-206 (741)
451 KOG1916 Nuclear protein, conta 94.1 0.24 5.1E-06 44.4 7.2 144 111-255 152-328 (1283)
452 PF10168 Nup88: Nuclear pore c 94.1 2.3 5E-05 38.3 13.4 69 182-251 86-180 (717)
453 KOG2280 Vacuolar assembly/sort 94.0 3.1 6.8E-05 36.9 13.4 183 70-259 62-255 (829)
454 PF07250 Glyoxal_oxid_N: Glyox 93.9 2.2 4.8E-05 32.7 12.3 144 74-220 48-207 (243)
455 KOG3522 Predicted guanine nucl 93.9 0.9 2E-05 40.5 10.2 144 13-174 549-705 (925)
456 COG5276 Uncharacterized conser 93.8 2.7 5.8E-05 33.0 20.3 140 67-213 101-244 (370)
457 PF14655 RAB3GAP2_N: Rab3 GTPa 93.7 0.53 1.1E-05 39.1 8.3 77 181-259 308-407 (415)
458 PLN00033 photosystem II stabil 93.7 3.5 7.6E-05 34.3 18.9 143 96-247 244-396 (398)
459 PF11715 Nup160: Nucleoporin N 93.7 0.65 1.4E-05 40.5 9.4 76 100-176 156-258 (547)
460 TIGR02276 beta_rpt_yvtn 40-res 93.5 0.57 1.2E-05 24.4 6.5 34 146-179 1-35 (42)
461 PF11715 Nup160: Nucleoporin N 93.4 0.62 1.3E-05 40.6 8.8 73 146-218 156-256 (547)
462 PF12768 Rax2: Cortical protei 93.3 3.3 7.1E-05 32.6 12.9 114 112-230 16-144 (281)
463 KOG1520 Predicted alkaloid syn 93.2 4 8.6E-05 33.2 13.5 146 94-241 68-237 (376)
464 PF02333 Phytase: Phytase; In 93.0 4.4 9.5E-05 33.3 22.1 196 49-251 57-291 (381)
465 KOG3522 Predicted guanine nucl 92.7 0.66 1.4E-05 41.3 7.7 142 104-255 549-702 (925)
466 PF07676 PD40: WD40-like Beta 92.5 0.81 1.7E-05 23.5 5.3 29 135-163 7-38 (39)
467 KOG2247 WD40 repeat-containing 92.4 0.013 2.8E-07 48.3 -2.6 132 51-194 40-173 (615)
468 PF14727 PHTB1_N: PTHB1 N-term 92.3 5.9 0.00013 33.2 17.7 183 65-254 148-364 (418)
469 KOG1900 Nuclear pore complex, 92.3 5.2 0.00011 37.9 13.0 148 96-251 84-273 (1311)
470 PF05935 Arylsulfotrans: Aryls 92.2 6.8 0.00015 33.6 15.2 110 142-255 153-306 (477)
471 PF13449 Phytase-like: Esteras 92.1 5.4 0.00012 32.3 14.9 100 95-197 89-231 (326)
472 KOG1900 Nuclear pore complex, 92.1 2.7 5.8E-05 39.6 11.0 141 68-211 95-273 (1311)
473 TIGR03606 non_repeat_PQQ dehyd 92.1 6.7 0.00015 33.2 15.6 105 135-241 28-164 (454)
474 PF14761 HPS3_N: Hermansky-Pud 92.0 4.1 8.8E-05 30.4 16.3 142 103-250 29-214 (215)
475 PF10395 Utp8: Utp8 family; I 91.9 8.7 0.00019 34.1 21.4 163 93-259 132-314 (670)
476 KOG2377 Uncharacterized conser 91.5 2.8 6E-05 35.0 9.4 120 39-168 60-187 (657)
477 PF07676 PD40: WD40-like Beta 90.9 1.2 2.6E-05 22.8 4.9 25 183-207 11-38 (39)
478 PF03088 Str_synth: Strictosid 90.8 1.7 3.6E-05 27.5 6.1 44 65-108 30-74 (89)
479 COG4590 ABC-type uncharacteriz 90.5 1.8 3.8E-05 36.1 7.5 170 39-218 214-394 (733)
480 COG5290 IkappaB kinase complex 90.2 5.8 0.00013 35.7 10.7 106 139-248 249-364 (1243)
481 PF10214 Rrn6: RNA polymerase 90.1 13 0.00028 34.1 13.5 121 90-211 145-277 (765)
482 PF08801 Nucleoporin_N: Nup133 90.1 10 0.00023 31.9 15.2 29 183-211 192-220 (422)
483 PF03088 Str_synth: Strictosid 89.8 1.5 3.2E-05 27.7 5.3 43 198-241 33-75 (89)
484 PLN00033 photosystem II stabil 89.8 11 0.00023 31.5 15.4 111 92-207 282-396 (398)
485 COG1520 FOG: WD40-like repeat 89.7 10 0.00022 31.2 17.3 184 65-255 71-273 (370)
486 COG5276 Uncharacterized conser 89.4 9.1 0.0002 30.2 18.0 148 96-253 92-244 (370)
487 COG3823 Glutamine cyclotransfe 89.4 2.4 5.2E-05 31.5 6.7 117 147-268 55-180 (262)
488 TIGR03118 PEPCTERM_chp_1 conse 89.2 9.7 0.00021 30.2 15.5 166 65-232 103-307 (336)
489 PF14781 BBS2_N: Ciliary BBSom 89.0 5.6 0.00012 27.3 13.5 113 97-217 5-132 (136)
490 KOG2280 Vacuolar assembly/sort 88.8 17 0.00037 32.6 16.9 38 182-219 218-255 (829)
491 PF12657 TFIIIC_delta: Transcr 88.6 6.6 0.00014 28.4 8.8 30 223-252 86-123 (173)
492 TIGR02171 Fb_sc_TIGR02171 Fibr 88.3 5.1 0.00011 36.6 9.3 84 151-236 321-412 (912)
493 smart00564 PQQ beta-propeller 87.8 1.9 4.2E-05 20.9 4.1 25 150-174 8-32 (33)
494 PRK13684 Ycf48-like protein; P 87.6 14 0.0003 30.1 24.2 113 136-253 172-290 (334)
495 TIGR03032 conserved hypothetic 87.1 14 0.0003 29.6 12.0 84 101-191 212-315 (335)
496 PRK10115 protease 2; Provision 87.0 23 0.00051 32.1 25.0 200 49-253 175-397 (686)
497 PLN02153 epithiospecifier prot 86.9 15 0.00033 29.8 14.0 67 147-214 85-171 (341)
498 TIGR02171 Fb_sc_TIGR02171 Fibr 86.3 9.3 0.0002 35.1 9.7 84 105-194 321-412 (912)
499 PLN02153 epithiospecifier prot 86.0 17 0.00037 29.5 17.3 139 73-215 51-230 (341)
500 KOG3616 Selective LIM binding 85.7 8.2 0.00018 34.6 8.9 64 94-164 18-81 (1636)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-43 Score=265.86 Aligned_cols=241 Identities=17% Similarity=0.163 Sum_probs=214.4
Q ss_pred EeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecCcce
Q 024185 6 FALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
+..+....++-+.-+|.+.+|+.... ..+..|.+|...+.++.|+|.. .. ++++++.||++++|++++..+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~----~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDL----NLATASADGTVKLWKLSQETP 253 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCcc----ceeeeccCCceeeeccCCCcc
Confidence 33344455555556888888887666 5567799999999999999983 32 288999999999999999999
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
++.+.+|. +..++|+|+|++|++++.|.+-++||++++.. .....||..+|.+++|.|||.++++|+.|..-++
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999986 44499999999999999999999999999886 5567799999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec-CCcEEEEeC
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAAS 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 241 (271)
||+++++++..+.+|..+ |.++.|+|+|..+++|+.|++++|||++....+.++++|..-|+.+.|+| .|.+|++++
T Consensus 330 WDlRtgr~im~L~gH~k~--I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKE--ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred eecccCcEEEEecccccc--eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 999999999999999887 99999999999999999999999999999999999999999999999999 688999998
Q ss_pred --CeEEEEcCCCCCCCcCCCC
Q 024185 242 --SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~~~~~ 260 (271)
++++||...+..+......
T Consensus 408 yD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred cCcceeeecCCCcccchhhcC
Confidence 8899999999888776653
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-40 Score=247.97 Aligned_cols=244 Identities=18% Similarity=0.215 Sum_probs=206.2
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
||.+-.-|....|+-+..+-.+.+|+..+. ......++|+.-|.|++|+|||+. +|+|+.||+|++||.++
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~~WVlcvawsPDgk~-----iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHKNWVLCVAWSPDGKK-----IASGSKDGSIRLWDPKT 188 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCC----CcceeecCCccEEEEEEECCCcch-----hhccccCCeEEEecCCC
Confidence 344444455566777777888888888776 444568899999999999999999 99999999999999999
Q ss_pred ccee-EEEecCC--cceEEEcC-----CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 82 ASFQ-GILRLRG--RPTVAFDQ-----QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 82 ~~~~-~~~~~~~--~~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
|+++ ..+.+|. +.+++|.| ..++||+++.||.++|||+..+.. .+.+.+|+.+|+|+.|--+| ++++
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----~~~lsgHT~~VTCvrwGG~g-liyS 263 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----VRTLSGHTASVTCVRWGGEG-LIYS 263 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----EEEeccCccceEEEEEcCCc-eEEe
Confidence 8765 5678886 56688865 568999999999999999998887 88899999999999999765 7899
Q ss_pred EecCCeEEEEECCCCeEEEEeecCCC------------------------------------------------------
Q 024185 154 TTTNNNIYVLDAYGGEKRCGFSLEPS------------------------------------------------------ 179 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~~~~~~~~------------------------------------------------------ 179 (271)
|+.|++|++|+...|++.+.+++|.+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 99999999999876655444443321
Q ss_pred -----------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcE
Q 024185 180 -----------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 180 -----------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
..-|..+.||||++++++++.|.+|++||.++|+.+..+++|-+.|..++|+.|.++
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 123778999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|++|| .++++|++++.++..+..
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred EEEcCCCceEEEEEeeeeeecccCC
Confidence 99999 789999999988766554
No 3
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-38 Score=230.39 Aligned_cols=237 Identities=15% Similarity=0.193 Sum_probs=201.5
Q ss_pred eeEEeeec-ceeeEEEEeecccee-eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 12 QALLFARQ-NIILILLESLCGIYQ-CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
..+++..+ +-.++.++......+ ...++.|.+|+..|..+..+++|++ .++++.|+++++||+.+++..+.|.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~-----alS~swD~~lrlWDl~~g~~t~~f~ 102 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF-----ALSASWDGTLRLWDLATGESTRRFV 102 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCce-----EEeccccceEEEEEecCCcEEEEEE
Confidence 34444443 556666665443221 1357789999999999999999999 8899999999999999999999999
Q ss_pred cCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEEC
Q 024185 90 LRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 90 ~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~ 165 (271)
+|. +.+++|++|.+.+++|+.|.+|++|++..... ....-..+.+-|.|+.|+|+ ...|++++.|+++++||+
T Consensus 103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred ecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 985 67799999999999999999999999987652 12222233788999999997 678999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeE
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVL 244 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v 244 (271)
++.+....+.+|.+. ++.+.+||||...++|+.||.+.+||++.++.++.+. |...|.+++|+|+...|+.+. ..|
T Consensus 180 ~~~~l~~~~~gh~~~--v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sI 256 (315)
T KOG0279|consen 180 RNCQLRTTFIGHSGY--VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSI 256 (315)
T ss_pred CCcchhhcccccccc--EEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCce
Confidence 999999999888876 9999999999999999999999999999999999886 678899999999998888887 669
Q ss_pred EEEcCCCCCCCcCCC
Q 024185 245 SFWIPNPSSNSTDES 259 (271)
Q Consensus 245 ~iw~~~~~~~~~~~~ 259 (271)
+|||++++....+..
T Consensus 257 kIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 257 KIWDLESKAVVEELK 271 (315)
T ss_pred EEEeccchhhhhhcc
Confidence 999999998876654
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=253.07 Aligned_cols=221 Identities=16% Similarity=0.205 Sum_probs=204.8
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
.+.-+..+|.+.+|+.... ..+..+.+|..+|..++|+|+|++ |++++.|.+-++||++++..+...++|.
T Consensus 233 ~lat~s~Dgtvklw~~~~e----~~l~~l~gH~~RVs~VafHPsG~~-----L~TasfD~tWRlWD~~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQE----TPLQDLEGHLARVSRVAFHPSGKF-----LGTASFDSTWRLWDLETKSELLLQEGHS 303 (459)
T ss_pred ceeeeccCCceeeeccCCC----cchhhhhcchhhheeeeecCCCce-----eeecccccchhhcccccchhhHhhcccc
Confidence 4555566888888887665 555668999999999999999999 9999999999999999999888888885
Q ss_pred --cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 93 --RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 93 --~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
+..++|.|||..+++|+.|..-++||++++.. +..+.+|..+|.+++|+|+|..+|+|+.|++++|||++..+.
T Consensus 304 ~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 304 KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred cccceeEecCCCceeeccCccchhheeecccCcE----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 67799999999999999999999999999997 888999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 171 RCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
+.++..|.+- |+.++|+| .|.+|++++.|+++++|..+++.+++.+.||.+.|.++..+||+.++++++ .++++|
T Consensus 380 ly~ipAH~nl--VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 380 LYTIPAHSNL--VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred ceecccccch--hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 9999999887 99999999 689999999999999999999999999999999999999999999999999 889999
Q ss_pred c
Q 024185 248 I 248 (271)
Q Consensus 248 ~ 248 (271)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 6
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-39 Score=264.31 Aligned_cols=206 Identities=17% Similarity=0.267 Sum_probs=192.6
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
..+.+-+|.++|..+.|+|+.++ |+++++|+++|+|.+++..++..+++|. ++.+.|+|.|-++|+++.|++-
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rf-----LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRF-----LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccc-----eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCcee
Confidence 44558899999999999999999 9999999999999999999999999986 4559999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++|.....+. ...+.+|.+.|.|++|+|+..++++||.|.++++||..+|..++.|.+|..+ |.+++|||+|++
T Consensus 518 rLWs~d~~~P----lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~--V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 518 RLWSTDHNKP----LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP--VTALAFSPCGRY 591 (707)
T ss_pred eeeecccCCc----hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc--eEEEEEcCCCce
Confidence 9999988664 5557799999999999999999999999999999999999999999999887 999999999999
Q ss_pred EEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
|++|+.||.|++||+.+++.+..+.+|.+.|.++.|+.||..|++++ ++|++||+..-.
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999999999999999999999999999999999998 779999986643
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=235.51 Aligned_cols=241 Identities=19% Similarity=0.225 Sum_probs=202.0
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
||.+-=-|....+.-++.+|++..++...+. ...+.+.+|+..|.+++|.|-...--...|++++.||.++|||+..
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~---~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ---QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCC---cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence 4445455777788888899999999988773 4556799999999999997643211111289999999999999999
Q ss_pred cceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC-----------------------------------
Q 024185 82 ASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK----------------------------------- 124 (271)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------------------------- 124 (271)
+.++..+.+|. ++|+.|--+ .++++|+.|++|++|+...+..
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred ceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 99999999985 677888644 4799999999999999766332
Q ss_pred ------------------------------------Ccce----EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 125 ------------------------------------GPFD----TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 125 ------------------------------------~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.|.. ...+.+|..-|..+.||||++++|+++.|..|++||
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 0000 112335668899999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--C
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S 242 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~ 242 (271)
.++|+.+.+|.+|-.. |..++|+.|.++|++|+.|.++++||+++.+....+++|...|.++.|+|||..+++|+ .
T Consensus 396 g~tGk~lasfRGHv~~--VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAA--VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred CCCcchhhhhhhccce--eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce
Confidence 9999999999999877 99999999999999999999999999999999999999999999999999999999998 5
Q ss_pred eEEEEc
Q 024185 243 VLSFWI 248 (271)
Q Consensus 243 ~v~iw~ 248 (271)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 589984
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.2e-36 Score=218.60 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=194.3
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeEE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~ 115 (271)
.+.+++|.+.|.++.|+++.+. +++++.||.+.|||.-+...++.++....++ ++|+|.|+++|.|+-|+...
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~-----ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRR-----IVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EEEecccccceeeeEecCCcCe-----EEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 3679999999999999999999 9999999999999999888888888887555 89999999999999999999
Q ss_pred EEeCCCCCCC--cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC-CC
Q 024185 116 LFDSRSYDKG--PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DG 192 (271)
Q Consensus 116 i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 192 (271)
||++.+.+.. ......+.+|.+.+.|+.|-+|+ .|++++.|.+..+||+++++.+..|.+|... |.+++++| ++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gD--V~slsl~p~~~ 199 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGD--VMSLSLSPSDG 199 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCccc--EEEEecCCCCC
Confidence 9999866321 12345588999999999999865 5899999999999999999999999998876 99999999 99
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
+.+++|+.|+..++||++.+.+.+.|.+|.+.|++++|.|+|.-+++|| ++.++||++..+.+...+.
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 9999999999999999999999999999999999999999999999999 8899999999877665553
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=216.58 Aligned_cols=228 Identities=14% Similarity=0.170 Sum_probs=198.1
Q ss_pred ceeEEeeecceeeEEEEeecc--ceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 11 TQALLFARQNIILILLESLCG--IYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
.+.+..+.-+..-.+++.... .-.....+.+.+|.+-+.++.|-+|+. +++++.|.+..+||+++++.+..|
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~------ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH------ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc------eEecCCCceEEEEEcccceEEEEe
Confidence 344444433444444444322 112234566899999999999999877 679999999999999999999999
Q ss_pred ecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 89 RLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 89 ~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
.+|. +.+++++| +++.+++|+.|+..++||++.+.. ...+.+|+..|.+++|.|+|.-+++|+.|++.++||+
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce----eEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence 9996 56688999 899999999999999999999887 7788899999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
|..+.+..+........|++++||..|++|++|..|..+.+||.-.++.+..+.+|...|+++..+|||..+++|| ..
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 9999999888666667899999999999999999999999999999999999999999999999999999999999 77
Q ss_pred EEEEc
Q 024185 244 LSFWI 248 (271)
Q Consensus 244 v~iw~ 248 (271)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-35 Score=214.12 Aligned_cols=214 Identities=17% Similarity=0.209 Sum_probs=188.8
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-----CcceeEEEecCC--cceEEEcCCCCEEEEEe
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-----LASFQGILRLRG--RPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~ 109 (271)
....+++|++.|..++..+.+.-+ +++++.|.++.+|++. .|.+++.+.+|+ +.-+..++||++.++++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~----l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDI----LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCce----EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 345689999999999999986654 6699999999999875 466788898886 45599999999999999
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEEC
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~ 189 (271)
.|+.+++||+.+++. ...+.+|...|.+++|+||.+.+++|+.|.+|++|+.- +.+..++....+..+|.+++|+
T Consensus 83 wD~~lrlWDl~~g~~----t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 83 WDGTLRLWDLATGES----TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccceEEEEEecCCcE----EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEc
Confidence 999999999999876 77788999999999999999999999999999999976 4455555545435789999999
Q ss_pred CC--CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 190 PD--GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 190 ~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|+ ..++++++.|+++++||+++.+....+.+|.+.++.+++||||.+.++|+ |.+.+||++.++.....+
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 98 67999999999999999999999999999999999999999999999998 889999999988766554
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-34 Score=207.85 Aligned_cols=236 Identities=16% Similarity=0.129 Sum_probs=198.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.+.+.+..+-.+.+++...+.. ..+..|++|.+.|..+.|..+|+. +.+|++||+++|||++...+.+.++..
T Consensus 52 k~~LAaa~~qhvRlyD~~S~np--~Pv~t~e~h~kNVtaVgF~~dgrW-----MyTgseDgt~kIWdlR~~~~qR~~~~~ 124 (311)
T KOG0315|consen 52 KKDLAAAGNQHVRLYDLNSNNP--NPVATFEGHTKNVTAVGFQCDGRW-----MYTGSEDGTVKIWDLRSLSCQRNYQHN 124 (311)
T ss_pred cchhhhccCCeeEEEEccCCCC--CceeEEeccCCceEEEEEeecCeE-----EEecCCCceEEEEeccCcccchhccCC
Confidence 4455555567777787776633 345779999999999999999999 889999999999999998777777655
Q ss_pred -CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--
Q 024185 92 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-- 168 (271)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-- 168 (271)
.++++..+|+...|++|..+|.|++||+.+... ....+......|.++...|||++++.+...|..++|++-+.
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c---~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC---THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT 201 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCcc---ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc
Confidence 478899999999999999999999999988754 11122334578999999999999999999999999998654
Q ss_pred ----eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 169 ----EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 169 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+++.+++.|... +..+.+|||+++|++++.|.+++||+..+. +.-..+++|..++...+||.||+||++++
T Consensus 202 ~s~l~P~~k~~ah~~~--il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGH--ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred cccceEhhheecccce--EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence 345566666654 999999999999999999999999999887 55667899999999999999999999998
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
+.+++|+++.++....-.
T Consensus 280 ~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred CceeecccccCceeeecC
Confidence 779999999988665544
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-36 Score=224.10 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=213.0
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQG 86 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~ 86 (271)
.|.-..++.+..+..+..++..++ ...+.+++|.+.+..+.|+..|++ +++++.|=.+++||.++ .++++
T Consensus 117 hp~~~~v~~as~d~tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk~-----l~tcSsDl~~~LWd~~~~~~c~k 187 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTETG----ELERSLRGHTDSVFDISFDASGKY-----LATCSSDLSAKLWDFDTFFRCIK 187 (406)
T ss_pred ccCceEEEEecCCceEEEEEccch----hhhhhhhccccceeEEEEecCccE-----EEecCCccchhheeHHHHHHHHH
Confidence 344344444557999999999999 446779999999999999999998 89999999999999987 45666
Q ss_pred EEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 87 ILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 87 ~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.+.+| .+.+++|-|.|.++++++.|.+|+.|+..++.. ..++.+|...|..++.+.||..+++++.|.++++|-
T Consensus 188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c----v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC----VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HhcCcccceeeEEEEecCCeeeecccccceeEEeccccee----EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 66665 467799999999999999999999999999987 888999999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCC---------------CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEE
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPD---------------GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 229 (271)
+.++++...+..|..+ +.+++|.|. ++++++++.|++|++||+.++.++.++.+|..+|..++
T Consensus 264 ~~t~~~k~~lR~hEh~--vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 264 VATKQCKAELREHEHP--VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred eccchhhhhhhccccc--eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 9999888889889887 888998763 25899999999999999999999999999999999999
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCCcCCCCC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTD 261 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~~ 261 (271)
|+|.|+||+++. +++++||+++++++...+..
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 999999999997 88999999999988877643
No 12
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-33 Score=205.66 Aligned_cols=225 Identities=41% Similarity=0.683 Sum_probs=202.9
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEc
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFD 99 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 99 (271)
+..+..++.... .++++|.+|...|+.+..+|.++. ++|++.|++|++||++..++...+...+.++.+|.
T Consensus 79 d~tIryLsl~dN----kylRYF~GH~~~V~sL~~sP~~d~-----FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfD 149 (311)
T KOG1446|consen 79 DDTIRYLSLHDN----KYLRYFPGHKKRVNSLSVSPKDDT-----FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFD 149 (311)
T ss_pred CCceEEEEeecC----ceEEEcCCCCceEEEEEecCCCCe-----EEecccCCeEEeeEecCCCCceEEecCCCcceeEC
Confidence 456666666666 899999999999999999999988 99999999999999999999989988888999999
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec-CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 100 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 100 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
|+|-++|++...+.|++||++....+|+..+.+. +.....+.+.|||||++++.+...+.+++.|.-+|..+.++..+.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence 9999999998888999999999988899988876 556789999999999999999999999999999999999988877
Q ss_pred CCC-ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC-CcceeEEEEEecCCcEEEEeCCeEEEEcCCCCC
Q 024185 179 SPN-TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 253 (271)
Q Consensus 179 ~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~ 253 (271)
... .-.+.+|+||++++++|+.||+|++|++++++.+..+.+ +.+++.++.|+|.-.++++++..+.+|=....+
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccc
Confidence 653 225688999999999999999999999999999999988 688999999999999999999999999776543
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=225.44 Aligned_cols=236 Identities=16% Similarity=0.235 Sum_probs=203.9
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.|....|+.+.+.|++.+|+...-..+ ..++.|+.+|.++.|++++.+ ++||+.+|.|++|+..-. .++.
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~fnFE----tilQaHDs~Vr~m~ws~~g~w-----miSgD~gG~iKyWqpnmn-nVk~ 174 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTSFNFE----TILQAHDSPVRTMKWSHNGTW-----MISGDKGGMIKYWQPNMN-NVKI 174 (464)
T ss_pred cCCCceeEeecccccEEEecCceeeHH----HHhhhhcccceeEEEccCCCE-----EEEcCCCceEEecccchh-hhHH
Confidence 455678889999999999887544222 236789999999999999999 999999999999998543 3444
Q ss_pred EecC---CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 88 LRLR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 88 ~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
++.| .+.+++|+|+...|+++++||+|+|||....+. ...+.+|.-.|.+++|+|...++++++.|..|++||
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 4443 478899999999999999999999999988776 666789999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecC-CcEEEEeC--
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-RAMFVAAS-- 241 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~-- 241 (271)
.++++++.++..|.+. |..+.|+|++++|++++.|..++++|+++.+.++.+++|...|+++.|+|- ..+|.+|+
T Consensus 251 prSg~cl~tlh~HKnt--Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNT--VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred CCCcchhhhhhhccce--EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence 9999999999888876 999999999999999999999999999999999999999999999999994 55777776
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
|.|..|.+...+++....
T Consensus 329 gsvvh~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIP 346 (464)
T ss_pred CceEEEeccccccccCCC
Confidence 889999998555554444
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.8e-34 Score=219.62 Aligned_cols=230 Identities=12% Similarity=0.139 Sum_probs=203.1
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
-|+.+..+|.+..|+...+ ....|..|+++|..+.|+.+|.+ +++++.|+++.+||..++...+.+..|+
T Consensus 249 ~LatG~~~G~~riw~~~G~-----l~~tl~~HkgPI~slKWnk~G~y-----ilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGN-----LISTLGQHKGPIFSLKWNKKGTY-----ILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred eEEEeecCcEEEEEecCch-----hhhhhhccCCceEEEEEcCCCCE-----EEeccCCccEEEEeccCceEEEeeeecc
Confidence 3555666788877765433 44568899999999999999999 9999999999999999999999999998
Q ss_pred cce--EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 93 RPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 93 ~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.+. +.|-. ...+++++.|+.|+++.+..... ..++.+|.++|.++.|+|.|.+|++++.|++++||+......
T Consensus 319 ~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P----~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 319 APALDVDWQS-NDEFATSSTDGCIHVCKVGEDRP----VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred CCccceEEec-CceEeecCCCceEEEEEecCCCc----ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 764 77754 44589999999999999987765 667778999999999999999999999999999999988888
Q ss_pred EEEeecCCCCCceeeEEECCCC---------CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 171 RCGFSLEPSPNTNTEATFTPDG---------QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
...+..|... |..+.|+|+| ..+++++.|+++++||+..+.+++.+..|..+|.+++|+|+|+++|+|+
T Consensus 394 ~~~l~~Hske--i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 394 VHDLQAHSKE--IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred hhhhhhhccc--eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 8889888877 8889999865 3789999999999999999999999999999999999999999999999
Q ss_pred --CeEEEEcCCCCCCCcCCC
Q 024185 242 --SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~~~~ 259 (271)
|.|.+|+++++++.+...
T Consensus 472 ~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CCCeeEeccccchheeEeec
Confidence 889999999998876554
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-34 Score=215.57 Aligned_cols=212 Identities=15% Similarity=0.145 Sum_probs=197.6
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCe
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGA 113 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~ 113 (271)
...+.+.+|.+-|.++++.|...+ |++|+.|++++|||+.+|+...++.+|- +..+++|+...|+++++.|+.
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~w-----f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEW-----FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred eehhhhhhccceEEEEeeCCCcee-----EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 356678899999999999999999 9999999999999999999999999885 445999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
|+.||++..+. +..+.+|-..|.|++.+|.-..|++++.|.++++||+++...+..+.+|..+ |.++.+.|-..
T Consensus 217 VKCwDLe~nkv----IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~--V~~V~~~~~dp 290 (460)
T KOG0285|consen 217 VKCWDLEYNKV----IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP--VASVMCQPTDP 290 (460)
T ss_pred eEEEechhhhh----HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc--ceeEEeecCCC
Confidence 99999999887 6678899999999999999999999999999999999999999999999987 99999998888
Q ss_pred EEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCC
Q 024185 194 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
.+++|+.|++|++||++.|+...++..|...|.+++.+|....+|+++ ..++-|++..+....-.
T Consensus 291 qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL 356 (460)
T ss_pred ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcc
Confidence 899999999999999999999999999999999999999999999999 88999999988776553
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.6e-34 Score=232.70 Aligned_cols=208 Identities=17% Similarity=0.252 Sum_probs=186.3
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-------------------------------eeEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-------------------------------FQGILR 89 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------~~~~~~ 89 (271)
+......++|..|++++.. +|.|-.|..|++|.+...+ ...++-
T Consensus 374 ~~nt~~~v~ca~fSddssm-----lA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSM-----LACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEcCCcceeEeecCCcch-----hhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 3344567889999999998 8899999999999886311 123356
Q ss_pred cCCcc--eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 LRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 ~~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
+|..+ .+.|+|+.++|++++.|+++++|.+.+... ...+.+|..+|.++.|+|.|-++|+++.|++.++|....
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~----~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC----LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeeccccee----EEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 66544 499999999999999999999999999887 777889999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
.++++.+.+|-.. +.|+.|+|+++|+++|+.|.++++||+.+|..++.|.||.++|.+++|||+|++|++|+ +.|+
T Consensus 525 ~~PlRifaghlsD--V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 525 NKPLRIFAGHLSD--VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred CCchhhhcccccc--cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 9999999999877 88999999999999999999999999999999999999999999999999999999998 8899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+||+.++++.....
T Consensus 603 iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 603 IWDLANGSLVKQLK 616 (707)
T ss_pred EEEcCCCcchhhhh
Confidence 99999988776554
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=230.95 Aligned_cols=236 Identities=17% Similarity=0.221 Sum_probs=199.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe-cCcceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL-MLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~ 90 (271)
..+..+..++.+..+....... ...+.+.+|...|..++|+|++++ +++++.|+++++||+ +.+..++++.+
T Consensus 172 ~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~-----l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 172 RALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSY-----LLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred CeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcE-----EEEecCCceEEEeeccCCCeEEEEecC
Confidence 4455555677777777644421 244556889999999999999998 899999999999999 55688999999
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
|. +.+++|+|+++++++|+.|++|++||+++++. ...+.+|.+.|++++|++++++|++++.|+.|++||+.++
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~----~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC----VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE----EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 96 56799999999999999999999999999876 7788999999999999999999999999999999999999
Q ss_pred e--EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce---eEEEEEecCCcEEEEeC--
Q 024185 169 E--KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV---VACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 169 ~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~-- 241 (271)
. +...+..+.....+++++|+|+++++++++.|+.+++||+..++.+..+.+|... +.+...++.+.++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCC
Confidence 8 4556655544325899999999999999999999999999999999999888764 44555678899999998
Q ss_pred CeEEEEcCCCCCCCcCC
Q 024185 242 SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~ 258 (271)
+.|.+|++.++......
T Consensus 401 ~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 401 GSVYVWDSSSGGILQRL 417 (456)
T ss_pred ceEEEEeCCccchhhhh
Confidence 88999999986654443
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=224.15 Aligned_cols=230 Identities=15% Similarity=0.241 Sum_probs=198.1
Q ss_pred eeecceeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 7 ALPITQALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 7 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
-+|...+|++... ++.+.+|+.+.. ...++.|.+|..+|..+.|+++|.. |+|++.|+.+++||+++|+++
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~-----fLS~sfD~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTS-----FLSASFDRFLKLWDTETGQVL 293 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCe-----eeeeecceeeeeeccccceEE
Confidence 3466677777754 889999998872 3677889999999999999999998 999999999999999999999
Q ss_pred EEEecCC-cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 86 GILRLRG-RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
..+.... ..|+.|+|++ +.+++|+.|+.|+.||+++++. ...+..|-+.|..+.|-++|+++++++.|+++++|
T Consensus 294 ~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW 369 (503)
T KOG0282|consen 294 SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW 369 (503)
T ss_pred EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCceEeeeccCccEEEE
Confidence 9998765 5779999998 8899999999999999999986 55677889999999999999999999999999999
Q ss_pred ECCCCeEE----------------------------------------------EEeecCCCCCceeeEEECCCCCEEEE
Q 024185 164 DAYGGEKR----------------------------------------------CGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 164 d~~~~~~~----------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
+.+.+-.+ ..+.+|...+.-..+.|||||.+|++
T Consensus 370 e~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 370 ENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred EcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 97643211 11223333455667899999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEc
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWI 248 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~ 248 (271)
|..||.+.+||.++-+.+..+++|..++..+.|+|.. ..+|+|+ |.|++|+
T Consensus 450 GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 450 GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999975 4788887 9999996
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.3e-33 Score=228.48 Aligned_cols=206 Identities=18% Similarity=0.258 Sum_probs=184.0
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
.+...+.++.|+++|+. +++++.|+.+++|+..+.+ ..+.+.+|. +..++|+|+++++++++.|+++++||
T Consensus 157 ~~~~sv~~~~fs~~g~~-----l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRA-----LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred cccCceEEEEEcCCCCe-----EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34788999999999999 8899999999999997777 666666664 66799999999999999999999999
Q ss_pred CCCC-CCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSY-DKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
+... .. ...+.+|...|++++|+|+++++++|+.|++|++||++++++...+..|... |++++|+++++++++
T Consensus 232 ~~~~~~~----~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 232 LKDDGRN----LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSPDGNLLVS 305 (456)
T ss_pred ccCCCeE----EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEECCCCCEEEE
Confidence 9444 43 6778899999999999999999999999999999999999999999999987 999999999999999
Q ss_pred ecCCCcEEEEEcCCce--eEEEecCCcce--eEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 198 GSGDGTLHAWNINTRN--EVACWNGNIGV--VACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
++.|+.|++||+.++. +...+.++... ++++.|+|++.+++++. +.+++||+..++......
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 9999999999999999 56777666554 99999999999999998 689999999887766554
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.6e-32 Score=195.03 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=177.1
Q ss_pred EEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCc---ceeEEE-ecC--CcceEEEcCCCCEEEEEe
Q 024185 37 IIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLA---SFQGIL-RLR--GRPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~-~~~--~~~~~~~~~~~~~l~~~~ 109 (271)
..+.+++|++++..++++|. |.. |++++.|+.|++|+...+ .+...+ .+| .+..++|+|.|++|++++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~i-----lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVI-----LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceE-----EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 34557899999999999998 776 889999999999999743 233333 233 467799999999999999
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC---eEEEEeecCCCCCceeeE
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG---EKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~ 186 (271)
-|.++.||.-..++- .....+.||...|.|++|+++|++||++++|+.|.+|....+ ++...++.|.+. |..+
T Consensus 81 FD~t~~Iw~k~~~ef--ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--VK~V 156 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEF--ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--VKHV 156 (312)
T ss_pred ccceEEEeecCCCce--eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--ccEE
Confidence 999999999876654 236678899999999999999999999999999999998743 567778888877 8889
Q ss_pred EECCCCCEEEEecCCCcEEEEEcC---CceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNIN---TRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
.|+|...+|++++.|++|++|+-. ...+.+++.+|...|.+++|+|.|..|++++ ++++||...
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 999999999999999999999866 4578999999999999999999999999998 889999854
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=192.02 Aligned_cols=223 Identities=14% Similarity=0.183 Sum_probs=189.1
Q ss_pred EEeee-cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEec
Q 024185 14 LLFAR-QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRL 90 (271)
Q Consensus 14 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~ 90 (271)
+|... -+-.+..++..+| ...+.+++.++.|+.+.+.|+++. |++++ .-.||+||++++. ++.++.+
T Consensus 12 iLvsA~YDhTIRfWqa~tG----~C~rTiqh~dsqVNrLeiTpdk~~-----LAaa~-~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTG----ICSRTIQHPDSQVNRLEITPDKKD-----LAAAG-NQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred EEEeccCcceeeeeehhcC----eEEEEEecCccceeeEEEcCCcch-----hhhcc-CCeeEEEEccCCCCCceeEEec
Confidence 44443 3788889998888 666779999999999999999998 55544 5679999998765 6888988
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
|. +.++.|..+|+++++|++||+++|||++.... .. .-.|..+|+++..+|+...|+++..+|.|++||+.+.
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~----qR-~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC----QR-NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCccc----ch-hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 84 66799999999999999999999999998654 22 2346799999999999999999999999999999988
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc------eeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR------NEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.+.+.+..... ..+.++...|||++++.+...|..++|++-+. +++..++.|.+.+..+.+|||+++|+++|
T Consensus 157 ~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 157 SCTHELIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred ccccccCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 77666543333 56999999999999999999999999998653 35667889999999999999999999998
Q ss_pred -CeEEEEcCCCC
Q 024185 242 -SVLSFWIPNPS 252 (271)
Q Consensus 242 -~~v~iw~~~~~ 252 (271)
.+++||+.++.
T Consensus 236 dktv~iwn~~~~ 247 (311)
T KOG0315|consen 236 DKTVKIWNTDDF 247 (311)
T ss_pred CceEEEEecCCc
Confidence 78999999887
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-32 Score=205.51 Aligned_cols=224 Identities=13% Similarity=0.133 Sum_probs=193.9
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.++++.++ +-.+.+++...- . ..++...+|+..+.+++|-|.|.+ ++|++.|.+|+.|++.++.+++++++
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~-~--~c~ks~~gh~h~vS~V~f~P~gd~-----ilS~srD~tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTF-F--RCIKSLIGHEHGVSSVFFLPLGDH-----ILSCSRDNTIKAWECDTGYCVKTFPG 233 (406)
T ss_pred ccEEEecCCccchhheeHHHH-H--HHHHHhcCcccceeeEEEEecCCe-----eeecccccceeEEecccceeEEeccC
Confidence 34444443 333445544332 1 122446789999999999999998 99999999999999999999999999
Q ss_pred CCcc--eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC---------------CcEEEE
Q 024185 91 RGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---------------GKSMLL 153 (271)
Q Consensus 91 ~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~ 153 (271)
|.-+ .++.+.||..+++++.|.++++|-..+++. ...+..|+-+|.|++|.|. ++++.+
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 9754 489999999999999999999999999876 5556789999999999774 258999
Q ss_pred EecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 154 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
++.|++|++||+.++.++.++.+|.+. |..++|+|.|+||+++.+|+++++||++++++++.+..|..-++++.|+.+
T Consensus 310 ~SrDktIk~wdv~tg~cL~tL~ghdnw--Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFTLVGHDNW--VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred ecccceEEEEeccCCeEEEEEecccce--eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence 999999999999999999999999875 999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeC--CeEEEEcC
Q 024185 234 RAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 234 ~~~l~~~~--~~v~iw~~ 249 (271)
..++++|+ .++++|..
T Consensus 388 ~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CceEEeccccceeeeeec
Confidence 99999999 77999964
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.1e-34 Score=217.59 Aligned_cols=221 Identities=17% Similarity=0.220 Sum_probs=191.2
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG- 92 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 92 (271)
++-+..+|.+.+++..-... .....+|...|.+++|||+... |++++.||+|+|||....+....+.+|+
T Consensus 153 miSgD~gG~iKyWqpnmnnV----k~~~ahh~eaIRdlafSpnDsk-----F~t~SdDg~ikiWdf~~~kee~vL~GHgw 223 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNNV----KIIQAHHAEAIRDLAFSPNDSK-----FLTCSDDGTIKIWDFRMPKEERVLRGHGW 223 (464)
T ss_pred EEEcCCCceEEecccchhhh----HHhhHhhhhhhheeccCCCCce-----eEEecCCCeEEEEeccCCchhheeccCCC
Confidence 33344466666666544421 2224566699999999998888 8999999999999999888888888885
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
+.+++|+|....+++++.|..|++||.+++.+ ..++.+|+..|..+.|+|++++|+++|.|..++++|+++.+.+
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~c----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcch----hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 78899999999999999999999999999998 7788899999999999999999999999999999999998889
Q ss_pred EEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 172 CGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
+++.+|... ++++.|+|- ..+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|=|.+|++|+ .++++|
T Consensus 300 ~~~r~Hkkd--v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 300 FTYRGHKKD--VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred HHhhcchhh--heeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 999999887 999999995 557788999999999999866666655 57999999999999999999998 779999
Q ss_pred cC
Q 024185 248 IP 249 (271)
Q Consensus 248 ~~ 249 (271)
.-
T Consensus 378 ~r 379 (464)
T KOG0284|consen 378 TR 379 (464)
T ss_pred cc
Confidence 74
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=227.39 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=201.0
Q ss_pred Eeee--cceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc
Q 024185 6 FALP--ITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 6 ~~~~--~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
.|+. .+.-++.+ ..+..+..|....+......+....+|++.+.+++++..+.-+ |++++.|+++++|++...
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf----fvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF----FVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE----EEEecCCceEEEecCCCc
Confidence 4444 33334444 3466777775533333334556678999999999997766543 789999999999999762
Q ss_pred ce---eEEE--------ecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 83 SF---QGIL--------RLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 83 ~~---~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
+. ...+ +...+++++++|+.+++|+|+.|.+.++|++++... ...+.+|+..|.|+.|+|..+.+
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLL 520 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE----EEEeeCCccceEEEEecccccee
Confidence 21 1111 233689999999999999999999999999996665 77889999999999999999999
Q ss_pred EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEe
Q 024185 152 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 231 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 231 (271)
+++|.|++|+||.+.+..++.+|.+|... |..+.|-.+|+.|++++.||.|++|++++++++.++.+|...|++++.+
T Consensus 521 aT~SgD~TvKIW~is~fSClkT~eGH~~a--Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 521 ATCSGDKTVKIWSISTFSCLKTFEGHTSA--VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred EeccCCceEEEEEeccceeeeeecCccce--eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 99999999999999999999999999976 9999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 232 PRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 232 ~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
|...++++|+ |.|.+|.=.+.....++
T Consensus 599 ~~~~~~~tgg~Dg~i~~wkD~Te~~~~ee 627 (775)
T KOG0319|consen 599 PLLDMFVTGGGDGRIIFWKDVTEEEQNEE 627 (775)
T ss_pred CccceeEecCCCeEEEEeecCcHHHHHHH
Confidence 9999999987 77999976665444443
No 25
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=222.81 Aligned_cols=240 Identities=16% Similarity=0.230 Sum_probs=214.1
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
+|..+.+|....++.+..+|++..++.... ..++..+.|++++..++.+||+.. +++|+.|.+|++||..-
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~pD~~g-----~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLSPDNKG-----FVTGSADKTVKFWDFKL 485 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehh----hhhhhhhccccceeeeeecCCCCc-----eEEecCCcEEEEEeEEE
Confidence 566778899999999999999999999888 566668899999999999999999 99999999999999741
Q ss_pred -----ccee--------EEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 82 -----ASFQ--------GILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 82 -----~~~~--------~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
+... ++++.. .+.|+++|||+++|+++--|.++++|-+.+.+. ...+.||.-+|.|+..|||
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCC
Confidence 2211 222322 478899999999999999999999999998876 6778899999999999999
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEE
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC 227 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 227 (271)
++.+++||.|.+|++|-+.=|.+-+.+-+|... |.++.|-|....+++++.|+.++-||-...+.++.+.+|...|++
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDS--vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS--VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCc--eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence 999999999999999999999999999888877 999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 228 LKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 228 ~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
++.+|+|.+++++| .+|++|......+.-
T Consensus 640 Lav~~~G~~vvs~shD~sIRlwE~tde~~~l 670 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKSIRLWERTDEILIL 670 (888)
T ss_pred eEEcCCCCeEEeccCCceeEeeeccCcceee
Confidence 99999999999998 679999987654433
No 26
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-32 Score=204.40 Aligned_cols=238 Identities=12% Similarity=0.155 Sum_probs=211.8
Q ss_pred EEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 5 VFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
+---|.++-+.-+..++.+.+++..++ .....+.+|...+..+++|+-..+ +.+++.|+.|+.||++..+.
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHpY-----lFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHPY-----LFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCce-----EEEecCCCeeEEEechhhhh
Confidence 334466677777788999999999999 444458999999999999999999 88999999999999999999
Q ss_pred eEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 85 QGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
++.+.+| ++.|++.+|.-+.|++|+.|.++++||+++... ...+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS----VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce----EEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 9999888 688899999999999999999999999999876 8889999999999999997788999999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
||++.|+...++..|... +.+++.+|....+++++.| .|+-|++..+..++.+.+|.+-|++++...|+-++.-+.
T Consensus 304 WDl~agkt~~tlt~hkks--vral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dn 380 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKS--VRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDN 380 (460)
T ss_pred eeeccCceeEeeecccce--eeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCc
Confidence 999999998888888876 9999999999999999987 599999999999999999999999999988876555444
Q ss_pred CeEEEEcCCCCCCCcCC
Q 024185 242 SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~ 258 (271)
|.+.+||.+++..-...
T Consensus 381 g~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRG 397 (460)
T ss_pred eEEEEEecCcCcccccc
Confidence 88999999987654443
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=217.13 Aligned_cols=233 Identities=15% Similarity=0.173 Sum_probs=200.1
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
..+.+..|+.+.++|...+++...- ..+..+.-....+..++++..|++++. -++.-|.+-+|++.+..-+-
T Consensus 273 fH~~t~~lvvgFssG~f~LyelP~f----~lih~LSis~~~I~t~~~N~tGDWiA~----g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLYELPDF----NLIHSLSISDQKILTVSFNSTGDWIAF----GCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred ccCCceEEEEEecCCeeEEEecCCc----eEEEEeecccceeeEEEecccCCEEEE----cCCccceEEEEEeeccceee
Confidence 3455566777777777777665443 444556666678899999999999433 44556899999999888887
Q ss_pred EEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 87 ILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 87 ~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
..++| .+.+++++|||+++++|+.||.|++||...+-+ ..++..|+..|+.+.|+..|+.+++++-||+|+.||
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 77877 478899999999999999999999999998877 777889999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC-cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+...+..+++..... .+..+++.+|.|..+..|+.|. .|.+|++++|+.+..+.||.++|.+++|+|++..|+++|
T Consensus 421 lkRYrNfRTft~P~p-~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred ecccceeeeecCCCc-eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 999999999886543 5678899999999999998885 699999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCC
Q 024185 242 SVLSFWIPNPS 252 (271)
Q Consensus 242 ~~v~iw~~~~~ 252 (271)
.+|++||+-..
T Consensus 500 kTVRiW~if~s 510 (893)
T KOG0291|consen 500 KTVRIWDIFSS 510 (893)
T ss_pred ceEEEEEeecc
Confidence 88999998654
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-32 Score=216.27 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=213.6
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.|...-++.+.-+|.+.+|+..+. ..++.|+-.+-+|....|-+-.++ +++|+.|..|++|+..+++.+..
T Consensus 22 HPtePw~la~LynG~V~IWnyetq----tmVksfeV~~~PvRa~kfiaRknW-----iv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 22 HPTEPWILAALYNGDVQIWNYETQ----TMVKSFEVSEVPVRAAKFIARKNW-----IVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred CCCCceEEEeeecCeeEEEecccc----eeeeeeeecccchhhheeeeccce-----EEEecCCceEEEEecccceeeEE
Confidence 466677888888999999998777 566778888889999999998888 89999999999999999999999
Q ss_pred EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEE
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d 164 (271)
|+.|. +.+++.+|...+++++++|-.|++||-+..= .....+.+|...|.+++|+| |.+.+++++-|++|++|.
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred eeccccceeeeeecCCCCeEEecCCccEEEEeeccCce---eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 99997 6779999999999999999999999987542 34677889999999999999 778999999999999999
Q ss_pred CCCCeEEEEeecCCCCCceeeEEECCCC--CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 165 AYGGEKRCGFSLEPSPNTNTEATFTPDG--QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
+.+..+..++.+|... |.++++-|.| .+|++|++|.+++|||.++..++++++||...|+.+.|+|.-.++++||
T Consensus 170 lgs~~~nfTl~gHekG--VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKG--VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred cCCCCCceeeeccccC--cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence 9999999999998877 9999997654 6999999999999999999999999999999999999999999999999
Q ss_pred -CeEEEEcCCCCCCCcCC
Q 024185 242 -SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~ 258 (271)
|+++||+..+.++....
T Consensus 248 DGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 248 DGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred CccEEEecCcceehhhhh
Confidence 99999999988776544
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-31 Score=215.07 Aligned_cols=232 Identities=17% Similarity=0.196 Sum_probs=194.6
Q ss_pred eeEEeeecc-eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQN-IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+-+.++++. |++..|+-... .++-..++|...+.+++++|||+. +++|+.||.|++||..++-+..+|..
T Consensus 320 DWiA~g~~klgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~-----iaTG~eDgKVKvWn~~SgfC~vTFte 390 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDGQL-----IATGAEDGKVKVWNTQSGFCFVTFTE 390 (893)
T ss_pred CEEEEcCCccceEEEEEeecc----ceeeeccccccceeeEEECCCCcE-----EEeccCCCcEEEEeccCceEEEEecc
Confidence 345556543 56777765555 444557899999999999999999 99999999999999999999999988
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-eEEEEECCC
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYG 167 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~ 167 (271)
|. ++.+.|+..|+.+++++-||+|+.||+..... +..++.+ .+....|++..|.|..+.+|+.|. .|.+|++.+
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN--fRTft~P-~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN--FRTFTSP-EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccce--eeeecCC-CceeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence 84 67799999999999999999999999988775 4444432 335678999999999999998875 599999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce-eEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
|+.+..+.+|.++ |.+++|+|++..|++++.|.+|++||+-... ...+++ +...+..++|+|||+-|+++. |.|
T Consensus 468 GqllDiLsGHEgP--Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 468 GQLLDILSGHEGP--VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred CeeeehhcCCCCc--ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceE
Confidence 9999999999987 9999999999999999999999999986543 344454 566789999999999999887 899
Q ss_pred EEEcCCCCCCCcCC
Q 024185 245 SFWIPNPSSNSTDE 258 (271)
Q Consensus 245 ~iw~~~~~~~~~~~ 258 (271)
.+||.+.+......
T Consensus 545 tf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSI 558 (893)
T ss_pred EEEEhhhceeeccc
Confidence 99999887665433
No 30
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.9e-30 Score=212.49 Aligned_cols=207 Identities=9% Similarity=0.073 Sum_probs=169.2
Q ss_pred EcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCc-------ceeEEEecCC--cceEEEcCCC-CEEEEE
Q 024185 40 FFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLA-------SFQGILRLRG--RPTVAFDQQG-LVFAVA 108 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~--~~~~~~~~~~-~~l~~~ 108 (271)
.+.+|.+.|.++.|+| ++.. |++++.|++|++||+.++ .++..+.+|. +.+++|+|++ ++|+++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~-----LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQK-----LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCE-----EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence 3678999999999999 6776 889999999999999765 2456777774 5679999986 699999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
+.|+.|++||+++++. ...+.+|...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|... ....+.|
T Consensus 145 s~DgtVrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~-~~~~~~w 219 (493)
T PTZ00421 145 GADMVVNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA-KSQRCLW 219 (493)
T ss_pred eCCCEEEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC-cceEEEE
Confidence 9999999999998775 5667889999999999999999999999999999999999988888877653 2345789
Q ss_pred CCCCCEEEEec----CCCcEEEEEcCCce-eEEEecCC-cceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCc
Q 024185 189 TPDGQYVVSGS----GDGTLHAWNINTRN-EVACWNGN-IGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNST 256 (271)
Q Consensus 189 ~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~ 256 (271)
.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ +.|++||+.++++..
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 99888777654 47899999998754 34333323 34456677899999888765 679999999887543
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=194.52 Aligned_cols=205 Identities=13% Similarity=0.136 Sum_probs=179.6
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEecCCcc--eEEEcCCCCEEEEEecCCeE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRLRGRP--TVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i 114 (271)
+..+.+|++.|..+.|+|+|.. |++|+.|..|.+|+.. ..+....+++|... -+.|.+|++.+++++.|.++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~-----~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSC-----FASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCe-----EeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 3457899999999999999998 9999999999999953 44556677788644 48999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
+.||+++++. ....++|..-|..+.-+.-| .++.+++.|+++++||+|+...++++..... ++++.|.-++.
T Consensus 115 ~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq---ltAv~f~d~s~ 187 (338)
T KOG0265|consen 115 RGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ---LTAVGFKDTSD 187 (338)
T ss_pred EEEeccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee---EEEEEeccccc
Confidence 9999999998 88888999999988844434 4566788899999999999988888764443 89999999999
Q ss_pred EEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 194 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
.+.+|+-|+.|++||++.+...+.+.+|..+|+.+..+|+|.++.+-+ +++++||++....
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 999999999999999999999999999999999999999999999998 8899999976543
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=216.21 Aligned_cols=240 Identities=13% Similarity=0.097 Sum_probs=199.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----e
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----F 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~ 84 (271)
|-.+.+.++.....+.+++.... ....+.+|+..+.++....+|.+ |++|+.|.++++|.++++. +
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~-----~c~ii~GH~e~vlSL~~~~~g~l-----lat~sKD~svilWr~~~~~~~~~~ 403 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTS-----YCQIIPGHTEAVLSLDVWSSGDL-----LATGSKDKSVILWRLNNNCSKSLC 403 (775)
T ss_pred CccceEEEEeCCCceEEEecCCC-----ceEEEeCchhheeeeeecccCcE-----EEEecCCceEEEEEecCCcchhhh
Confidence 44467777776677777733322 23368999999999997777877 8999999999999885443 3
Q ss_pred eEEEecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCC-cceEE----EecCCccceEEEEEcCCCcEEEEEec
Q 024185 85 QGILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKG-PFDTF----LVGGDTAEVCDIKFSNDGKSMLLTTT 156 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~-~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~ 156 (271)
++...+|. +.+++++..+ .+|++++.|+++++|++...+.. +...+ ....|...|+|++.+|+.+++++||.
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ 483 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence 44455664 5668887655 68999999999999999763221 11112 34579999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcE
Q 024185 157 NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 157 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
|.+.++|+++..+...++.+|... +.++.|+|..+.++++|.|.+|+||.+.+..+++++.||...|..+.|-.+|+.
T Consensus 484 DktaKiW~le~~~l~~vLsGH~RG--vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~q 561 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRLLGVLSGHTRG--VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQ 561 (775)
T ss_pred ccceeeecccCceEEEEeeCCccc--eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcE
Confidence 999999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
|++++ |-+++|+++++.++...+.
T Consensus 562 liS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 562 LISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred EEeccCCCcEEEEeccchhhhhhhhh
Confidence 99997 8899999999998776653
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-29 Score=198.72 Aligned_cols=235 Identities=18% Similarity=0.251 Sum_probs=199.8
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+. ....+..|...+..+.++|+++. +++++.||.+++||+++++....+
T Consensus 19 ~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 19 PDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGTY-----LASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCCCE-----EEEEcCCCeEEEEEcCcccceEEE
Confidence 344566666778999998877652 33446778888888999999977 788899999999999988888888
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..+. +.++.|+++++++++++.++.+.+||+.+.+. ...+..|...+.+++|+|++.++++++.|+.+++||++
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC----LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE----EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 7765 66799999988888888899999999987664 55566788999999999999988888889999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++....+..+... +.++.|+|+++.+++++.++.+++||+++++.+..+..|...+.++.|+|++.++++++ +.+
T Consensus 166 ~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 166 TGKCVATLTGHTGE--VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred ccccceeEecCccc--cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 88888888766654 89999999999999999999999999999999998888988999999999999998886 889
Q ss_pred EEEcCCCCCCCcCC
Q 024185 245 SFWIPNPSSNSTDE 258 (271)
Q Consensus 245 ~iw~~~~~~~~~~~ 258 (271)
++|++.+++.....
T Consensus 244 ~i~~~~~~~~~~~~ 257 (289)
T cd00200 244 RVWDLRTGECVQTL 257 (289)
T ss_pred EEEEcCCceeEEEc
Confidence 99999876655443
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.3e-29 Score=198.17 Aligned_cols=225 Identities=22% Similarity=0.329 Sum_probs=192.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+..++.+..++...+ .....+..|...+.++.+++++.. +++++.|+.+++||+++++....+
T Consensus 61 ~~~~~l~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 61 ADGTYLASGSSDKTIRLWDLETG----ECVRTLTGHTSYVSSVAFSPDGRI-----LSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CCCCEEEEEcCCCeEEEEEcCcc----cceEEEeccCCcEEEEEEcCCCCE-----EEEecCCCeEEEEECCCcEEEEEe
Confidence 33345666677888888887765 333446678889999999999776 667777999999999988888888
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
..+. +.+++|+|+++++++++.++.+++||+++++. ...+..|...+.++.|+|+++.+++++.++.+++||++
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 7665 67799999999888888899999999987765 44555788899999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.+..+..+... +.++.|+|++.++++++.+|.+++||+.+++....+..|...|.+++|+|++++|++++ +.+
T Consensus 208 ~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 208 TGKCLGTLRGHENG--VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred CCceecchhhcCCc--eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 98888887666654 99999999999999888899999999999999999999999999999999999999987 789
Q ss_pred EEEc
Q 024185 245 SFWI 248 (271)
Q Consensus 245 ~iw~ 248 (271)
++|+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9996
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=7.8e-30 Score=197.61 Aligned_cols=228 Identities=17% Similarity=0.231 Sum_probs=196.1
Q ss_pred Eeeecc---eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc
Q 024185 6 FALPIT---QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 6 ~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
|++.-+ ..++-+..++.+++++...+. ..+.|.-|....-.+.|-.+.. |++++.|+.|+++.+...
T Consensus 280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~----~~q~f~~~s~~~lDVdW~~~~~------F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGGVDGTTILWDAHTGT----VKQQFEFHSAPALDVDWQSNDE------FATSSTDGCIHVCKVGED 349 (524)
T ss_pred EEEEEcCCCCEEEeccCCccEEEEeccCce----EEEeeeeccCCccceEEecCce------EeecCCCceEEEEEecCC
Confidence 444443 346666679999999998884 3344777887766688877766 679999999999999999
Q ss_pred ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC---------cEE
Q 024185 83 SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG---------KSM 151 (271)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l 151 (271)
.++.++.+|. +.++.|+|.+.+|++++.|++++||.+..... ...+.+|...|..+.|+|+| ..+
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~----~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS----VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc----hhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 9999998884 67799999999999999999999999877665 66788999999999999975 368
Q ss_pred EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEe
Q 024185 152 LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA 231 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 231 (271)
++++.|++|++||+..+.++++|..|..+ |.+++|+|+|+++++|+.||.|++|+.++++..+...+. +.|..++|+
T Consensus 426 ~sas~dstV~lwdv~~gv~i~~f~kH~~p--VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn 502 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESGVPIHTLMKHQEP--VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWN 502 (524)
T ss_pred EEeecCCeEEEEEccCCceeEeeccCCCc--eEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEc
Confidence 99999999999999999999999889887 999999999999999999999999999999999999864 459999999
Q ss_pred cCCcEEEEe-C-CeEEEEcCC
Q 024185 232 PRRAMFVAA-S-SVLSFWIPN 250 (271)
Q Consensus 232 ~~~~~l~~~-~-~~v~iw~~~ 250 (271)
.+|.+|..+ + +.+.+-|++
T Consensus 503 ~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 503 AAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCCEEEEEecCCCceEEEec
Confidence 999887666 4 778887764
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=2.4e-29 Score=222.21 Aligned_cols=224 Identities=12% Similarity=0.146 Sum_probs=184.8
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
...++.+..++.+.+|+...+ ..+..+.+|.+.|.+++|+| ++.. |++|+.||+|++||++++..+..+.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~-----L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTL-----LASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCE-----EEEEcCCCEEEEEECCCCcEEEEEe
Confidence 345556667899999987766 45566889999999999997 6676 8899999999999999998888887
Q ss_pred cC-CcceEEEc-CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 LR-GRPTVAFD-QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 ~~-~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
.+ .+.++.|+ +++.+|++|+.||.|++||+++.+. ....+.+|...|.++.|. ++.++++++.|++|++||++.
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 65 35668884 5789999999999999999987652 134567899999999997 678899999999999999974
Q ss_pred C------eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-------------cCCcceeEEE
Q 024185 168 G------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-------------NGNIGVVACL 228 (271)
Q Consensus 168 ~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~~ 228 (271)
+ +.+..+.+|... +..++|+|+++++++|+.|+.+++|+......+..+ ..|...|.++
T Consensus 692 ~~~~~~~~~l~~~~gh~~~--i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v 769 (793)
T PLN00181 692 SISGINETPLHSFMGHTNV--KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV 769 (793)
T ss_pred CccccCCcceEEEcCCCCC--eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE
Confidence 3 566778777765 788999999999999999999999998765443221 2345679999
Q ss_pred EEecCCcEEEEeC--CeEEEEcC
Q 024185 229 KWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 229 ~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
+|+|++..|++|+ |.|++|++
T Consensus 770 ~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 770 CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999998 89999986
No 37
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2e-30 Score=198.05 Aligned_cols=236 Identities=15% Similarity=0.231 Sum_probs=187.3
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
...|.-+.++-..+++....... -.....+.+|...|.-+.||||.++ +++++.|..+.+||..+|.....+..
T Consensus 236 GkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdry-----LlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 236 GKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRY-----LLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred CeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCe-----EEecCchHheeeccCCcchhhhhccc
Confidence 34455556677777777665433 3456678899999999999999999 88999999999999999998877754
Q ss_pred C---CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce------EEE------------------------------
Q 024185 91 R---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD------TFL------------------------------ 131 (271)
Q Consensus 91 ~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~------------------------------ 131 (271)
. .+.+++|.|||..+++|+.|+.+..||+......... ...
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 3 4677999999999999999999999998754320000 000
Q ss_pred -ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEc
Q 024185 132 -VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 132 -~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 209 (271)
+.....+|+++..|.|++++++.-.+..+++||++..+.++.+.+|.....+..-||-- +..++++|++|+.|+||+.
T Consensus 390 ~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 390 GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 00122567777788888877777778888889988888888888888776776677754 5589999999999999999
Q ss_pred CCceeEEEecCCcceeEEEEEecC-CcEEEEeC--CeEEEEcCCCC
Q 024185 210 NTRNEVACWNGNIGVVACLKWAPR-RAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~--~~v~iw~~~~~ 252 (271)
.+++++..+.||...|++++|+|. -.++|++| |+||||-+...
T Consensus 470 ~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 470 ISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999995 45888888 99999987643
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.5e-30 Score=182.06 Aligned_cols=227 Identities=19% Similarity=0.231 Sum_probs=197.2
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG- 92 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 92 (271)
.+...++..+.+|++..+ ..++.|.+|...|..++.+.|... |++|+.|..+.+||.++|+..+.+.+|.
T Consensus 32 ~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dnsk-----f~s~GgDk~v~vwDV~TGkv~Rr~rgH~a 102 (307)
T KOG0316|consen 32 CLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDNSK-----FASCGGDKAVQVWDVNTGKVDRRFRGHLA 102 (307)
T ss_pred EEEcCCCceEEeeccccc----ceeeeecCCCceeeeccccccccc-----cccCCCCceEEEEEcccCeeeeecccccc
Confidence 344456889999999988 778889999999999999999988 8999999999999999999999999995
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE----------ecCCc-------------------------
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL----------VGGDT------------------------- 136 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~~~------------------------- 136 (271)
++.++|+.+...+++|+.|..+++||.+....+|++.+. +..|.
T Consensus 103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~ 182 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF 182 (307)
T ss_pred eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc
Confidence 677999999999999999999999999987766655332 22222
Q ss_pred -cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 137 -AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 137 -~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
.+|+|++|++|++..++++.|+++++.|-.+|+.+..+++|.+...-...+++.....+++|++||.+++||+...+.+
T Consensus 183 g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 183 GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 6899999999999999999999999999999999999999988766677888888899999999999999999999999
Q ss_pred EEecCCcce-eEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 216 ACWNGNIGV-VACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 216 ~~~~~~~~~-v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
..++.+... |.+++++|.-.-|+++. +.+..|.-
T Consensus 263 sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 263 SKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred eeeccCCceeEEeeecccCccceeEecCCceeceee
Confidence 999888777 89999999877666665 66777753
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=7.3e-30 Score=187.52 Aligned_cols=228 Identities=14% Similarity=0.169 Sum_probs=197.8
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
-++..+.++-+..+..+..|+...| ...+.+++|.+.++.+.-+.-|..+ +.|++.||++++||+++...++
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG----~~~rk~k~h~~~vNs~~p~rrg~~l----v~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETG----KRIRKHKGHTSFVNSLDPSRRGPQL----VCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccc----eeeehhccccceeeecCccccCCeE----EEecCCCceEEEEeecccchhh
Confidence 3445566777777999999999999 5566699999999999866666665 5599999999999999999988
Q ss_pred EEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 87 ILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
+++.. ...++.|..++..+.+|+-|+.|++||++.... ...+.||.+.|+.+..+|+|.++.+-+.|.++++||.
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred ccccceeEEEEEecccccceeeccccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence 88655 577899999999999999999999999998887 8889999999999999999999999999999999999
Q ss_pred CC----CeEEEEeecCCCC--CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEE
Q 024185 166 YG----GEKRCGFSLEPSP--NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 166 ~~----~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+. .+++..+.++.+. -....++|+|+++++.+|+.|..+++||......+..+++|.+.|+++.|+|...+|.+
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEE
Confidence 74 3457777766554 33566899999999999999999999999999999999999999999999999999999
Q ss_pred eC--CeEEE
Q 024185 240 AS--SVLSF 246 (271)
Q Consensus 240 ~~--~~v~i 246 (271)
++ .+|.+
T Consensus 326 ~~sdk~i~l 334 (338)
T KOG0265|consen 326 CSSDKTIYL 334 (338)
T ss_pred eccCceeEe
Confidence 98 44544
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.2e-29 Score=187.44 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=192.9
Q ss_pred ceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 11 TQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 11 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
+..++.+ ..+....+|+...+. ..-.+.+|+..|.++.||.+|.+ ||+|+.+|.|++|...++.....+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~Fshdgtl-----LATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHDGTL-----LATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred CCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccCceE-----EEecCCCccEEEEEcccCceEEEee
Confidence 4455444 456777888888774 33348899999999999999999 9999999999999999999888884
Q ss_pred --cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 --LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 --~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
...+.-+.|+|.+..|++|+.||.+..|.+.+... ...+.+|..++++=.|.|+|+.++++..||+|++||+.+
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 44566699999999999999999999999988654 666789999999999999999999999999999999999
Q ss_pred CeEEEEeecCCC--------------------------------------------------------------------
Q 024185 168 GEKRCGFSLEPS-------------------------------------------------------------------- 179 (271)
Q Consensus 168 ~~~~~~~~~~~~-------------------------------------------------------------------- 179 (271)
++++.++....+
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 887776651100
Q ss_pred -------------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCC
Q 024185 180 -------------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 180 -------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
+..|..+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.+++++|+.
T Consensus 302 A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~ 380 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK 380 (399)
T ss_pred hcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence 01466677777 6789999999999999999999999999999999999999999
Q ss_pred cEEEEeC--CeEEEEcCC
Q 024185 235 AMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 235 ~~l~~~~--~~v~iw~~~ 250 (271)
++++++| ++.+||+..
T Consensus 381 ~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cEEEEecCCCeEEEEecC
Confidence 9999998 789999764
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-30 Score=215.04 Aligned_cols=238 Identities=16% Similarity=0.196 Sum_probs=207.5
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
..|...-++.+.-+|.+..|+..-+ ..+..|..|+++|..+.|+|++.+ |+||+.|-.|++|+.++.+++.
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~----tli~rFdeHdGpVRgv~FH~~qpl-----FVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVDFHPTQPL-----FVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhh----hHHhhhhccCCccceeeecCCCCe-----EEecCCccEEEEEecccceehh
Confidence 3466677888888999999998877 555569999999999999999999 9999999999999999999999
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
++.+|- +..+.|++.-.+|+++++|.+|+||+.+++++ ...+.||...|.|.+|+|...+++++|-|.+|++||
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~----iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC----IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce----EEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 999995 56699999999999999999999999999987 778889999999999999999999999999999999
Q ss_pred CCCCe-----------------------------EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee-
Q 024185 165 AYGGE-----------------------------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE- 214 (271)
Q Consensus 165 ~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 214 (271)
+..-+ ..+.+.+|... |.-++|+|.-..+++|++|..|++|.+..-+.
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG--VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG--VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc--cceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 75211 12234455544 88899999999999999999999999875443
Q ss_pred -EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 215 -VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 215 -~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.+..+|...|+++-|+|..+++++.| +.+++||++..+....+.
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 456789999999999999999999998 889999999988776664
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=6.1e-32 Score=202.49 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=191.9
Q ss_pred EEeeecc-eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 5 VFALPIT-QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 5 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
||++-.. ++++-+..+..+..|+...- .....+.+|++.|.|+.+... . +++|+.|.+|++||.++++
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLqyd~r--v-----iisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQYDER--V-----IVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccH----HHHHhhhcCCCcEEeeeccce--E-----EEecCCCceEEEEeccCCc
Confidence 3444433 45556677888888887654 344558899999998887654 4 7899999999999999999
Q ss_pred eeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 84 FQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
+++++-.|.-.++-+--++.++++++.|.++.+||+..... ......+.||...|..+.|+. +++++++.|.+|++|
T Consensus 269 ~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 345 (499)
T ss_pred hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence 99999888766654444677999999999999999987652 222345779999999999874 699999999999999
Q ss_pred ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--
Q 024185 164 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 241 (271)
+..+++.++++.+|... |.|+.+ .|+++++|+.|.+|++||+..|.++..++||..-|.++.|. .+.+++|.
T Consensus 346 ~~st~efvRtl~gHkRG--IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD 419 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRG--IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 419 (499)
T ss_pred eccceeeehhhhccccc--ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence 99999999999999876 755554 68999999999999999999999999999999999999995 67899998
Q ss_pred CeEEEEcCCCCCCC
Q 024185 242 SVLSFWIPNPSSNS 255 (271)
Q Consensus 242 ~~v~iw~~~~~~~~ 255 (271)
|+|++||+..+...
T Consensus 420 GkikvWdl~aaldp 433 (499)
T KOG0281|consen 420 GKIKVWDLQAALDP 433 (499)
T ss_pred ceEEEEecccccCC
Confidence 99999999887654
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-30 Score=183.93 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=182.5
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i 114 (271)
+.+.+..++++|..+.++.+|++ .++++.|.+|++|+...+.+++++.+|+... ++.+.|+..|++++.|..+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY-----~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNY-----CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCE-----EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 45567889999999999999999 8899999999999999999999998886444 7788899999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--eEEEEeecCCCCCceeeEEECCCC
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
.+||+++++. ...+.+|.+.|..++|+.+...+++|+.|.++++||.++. ++++.+...... |.++..+ +
T Consensus 84 ~vwDV~TGkv----~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~--V~Si~v~--~ 155 (307)
T KOG0316|consen 84 QVWDVNTGKV----DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG--VSSIDVA--E 155 (307)
T ss_pred EEEEcccCee----eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc--eeEEEec--c
Confidence 9999999997 7788899999999999999999999999999999999764 566766655554 8777764 5
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
..+++|+.||+++.||++.|+.....-+ .+|++++|++|++..+.++ +++++-|-++++++....
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk 222 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK 222 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc
Confidence 6799999999999999999988776654 4799999999999888887 889999999998876554
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-29 Score=180.49 Aligned_cols=229 Identities=14% Similarity=0.181 Sum_probs=190.0
Q ss_pred eeEEeeec-ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQ-NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
..|+|.++ +.....|-..+| .++-.|.+|.++|.++...-+.+. +++|+.|.++++||.++|+.+.+++.
T Consensus 22 GDLlFscaKD~~~~vw~s~nG----erlGty~GHtGavW~~Did~~s~~-----liTGSAD~t~kLWDv~tGk~la~~k~ 92 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNG----ERLGTYDGHTGAVWCCDIDWDSKH-----LITGSADQTAKLWDVETGKQLATWKT 92 (327)
T ss_pred CcEEEEecCCCCceEEEecCC----ceeeeecCCCceEEEEEecCCcce-----eeeccccceeEEEEcCCCcEEEEeec
Confidence 45777765 667777777778 777789999999999999999998 89999999999999999999999987
Q ss_pred CC-cceEEEcCCCCEEEEEec-----CCeEEEEeCCCCCC---CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 91 RG-RPTVAFDQQGLVFAVAME-----AGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 91 ~~-~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
.. +..+.|+++|++++...+ .+.|.++|++.... .......+..+...++..-|.|-+++|++|..||.|.
T Consensus 93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is 172 (327)
T KOG0643|consen 93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSIS 172 (327)
T ss_pred CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEE
Confidence 74 677999999998887753 46899999984331 0011445566778999999999999999999999999
Q ss_pred EEECCCCeE-EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe----------------------
Q 024185 162 VLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW---------------------- 218 (271)
Q Consensus 162 ~~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------- 218 (271)
.||+++++. +..-..|... |+.++++||..++++++.|.+-++||+.+.+.++++
T Consensus 173 ~~da~~g~~~v~s~~~h~~~--Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 173 IYDARTGKELVDSDEEHSSK--INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred EEEcccCceeeechhhhccc--cccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecC
Confidence 999999854 4445566654 999999999999999999999999999876654432
Q ss_pred ---------------------------------cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 219 ---------------------------------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 219 ---------------------------------~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
++|-++|++++|+|+|+..++|+ |.|++...+.
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 37889999999999999999998 8888876654
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.7e-30 Score=204.77 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=191.1
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc-ceeEEE
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-SFQGIL 88 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~ 88 (271)
..+-++.+..++.+..++..+. ..+..|+.|.+-+.+++.+|..++ +++++.|-+|++||.+.+ .+.+++
T Consensus 66 RknWiv~GsDD~~IrVfnynt~----ekV~~FeAH~DyIR~iavHPt~P~-----vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTG----EKVKTFEAHSDYIRSIAVHPTLPY-----VLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred ccceEEEecCCceEEEEecccc----eeeEEeeccccceeeeeecCCCCe-----EEecCCccEEEEeeccCceeeeeEE
Confidence 3356777888999999988887 677889999999999999999999 899999999999999865 578889
Q ss_pred ecCCc--ceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEE
Q 024185 89 RLRGR--PTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVL 163 (271)
Q Consensus 89 ~~~~~--~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~ 163 (271)
++|.. ..++|+| |.+.+++++-|++|++|.+..... .+++++|...|.|+.|-+. ..+|++|+.|.++++|
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 99974 5589999 567999999999999999988776 8889999999999999884 4699999999999999
Q ss_pred ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 164 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
|..+.++++++.+|.+. |..++|+|.=..+++|++||+++||+-.+-+...++.-....+++++-.+.++.++.|.
T Consensus 213 DyQtk~CV~TLeGHt~N--vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 213 DYQTKSCVQTLEGHTNN--VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ecchHHHHHHhhccccc--ceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 99999999999999987 99999999999999999999999999888777776665567788888777777777765
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.2e-28 Score=174.78 Aligned_cols=238 Identities=16% Similarity=0.169 Sum_probs=183.5
Q ss_pred EEEeeecceeEEeee-cceeeEEEEeecc-ceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 4 IVFALPITQALLFAR-QNIILILLESLCG-IYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
++.-.|....++..+ .+..+..++...+ .+.+.. ..-.+|+..|..++|+|.|++ |++++.|.++.||.-..
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~-vld~~hkrsVRsvAwsp~g~~-----La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT-VLDDGHKRSVRSVAWSPHGRY-----LASASFDATVVIWKKED 92 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE-eccccchheeeeeeecCCCcE-----EEEeeccceEEEeecCC
Confidence 344444433355554 4666677766532 222221 123579999999999999998 99999999999998765
Q ss_pred c--ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC
Q 024185 82 A--SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 82 ~--~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 157 (271)
+ +++.++++|+ +.+++|+++|++||+++.|..|-||.+..+.. .-....+..|...|..+.|+|...+|++++.|
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD 171 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EEEEeeeccccccccEEEEcCCcceeEEeccC
Confidence 4 5788899985 67799999999999999999999999985542 22345688999999999999999999999999
Q ss_pred CeEEEEECC---CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-------cee-------------
Q 024185 158 NNIYVLDAY---GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-------RNE------------- 214 (271)
Q Consensus 158 ~~i~~~d~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~------------- 214 (271)
.+|++|+-. ..++.+++.+|... |.+++|+|.|..|++++.|++++||-..+ ++.
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~T--VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ 249 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENT--VWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASG 249 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccce--EEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEec
Confidence 999999865 34678888888765 99999999999999999999999997321 111
Q ss_pred -----EEEe------------------cCCcceeEEEEEecC-CcEEEEeC--CeEEEEcCC
Q 024185 215 -----VACW------------------NGNIGVVACLKWAPR-RAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 215 -----~~~~------------------~~~~~~v~~~~~s~~-~~~l~~~~--~~v~iw~~~ 250 (271)
+..+ ..|...|+++.|.|. .++|++++ |.+++|.+.
T Consensus 250 ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0000 246678899999994 56777776 889999764
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=186.86 Aligned_cols=226 Identities=16% Similarity=0.286 Sum_probs=190.6
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-CCcceE
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-RGRPTV 96 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 96 (271)
+.++.-.+-+-.+|. -+-.|.+|+++|....+..+... .++++.|-+-++||.-+|..+..++. |-+..+
T Consensus 36 ~kd~~pmlr~g~tgd----wigtfeghkgavw~~~l~~na~~-----aasaaadftakvw~a~tgdelhsf~hkhivk~~ 106 (334)
T KOG0278|consen 36 SKDGKPMLRNGDTGD----WIGTFEGHKGAVWSATLNKNATR-----AASAAADFTAKVWDAVTGDELHSFEHKHIVKAV 106 (334)
T ss_pred ccCCCchhccCCCCC----cEEeeeccCcceeeeecCchhhh-----hhhhcccchhhhhhhhhhhhhhhhhhhheeeeE
Confidence 445555555555553 34559999999999999888777 78999999999999999999888865 456789
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec
Q 024185 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 176 (271)
+|+.|.++|++|+.+..+++||++..+. +...+.+|.+.|..+-|....+.+++++.|++|++||.++++.++++..
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~A---pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~ 183 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKA---PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF 183 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCC---CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence 9999999999999999999999998775 3445679999999999999999999999999999999999988877654
Q ss_pred CCC-------------------------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-
Q 024185 177 EPS-------------------------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW- 218 (271)
Q Consensus 177 ~~~-------------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 218 (271)
... +..|.+.+++|+...+++|++|..++.||..+++.+..+
T Consensus 184 ~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n 263 (334)
T KOG0278|consen 184 NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN 263 (334)
T ss_pred CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc
Confidence 321 124666677888888889999999999999999998886
Q ss_pred cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 219 NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 219 ~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
++|.++|.|+.|+|||...++|| |+|++|.+..++..
T Consensus 264 kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 264 KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 89999999999999999999999 99999998776543
No 48
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.7e-28 Score=202.81 Aligned_cols=207 Identities=10% Similarity=0.151 Sum_probs=160.0
Q ss_pred EEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcc--------eeEEEecCC--cceEEEcCCCCE-
Q 024185 37 IIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLAS--------FQGILRLRG--RPTVAFDQQGLV- 104 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~--~~~~~~~~~~~~- 104 (271)
.+..+.+|.+.|.+++|+|+ +.. |++|+.||+|++||+.++. ++..+.+|. +.+++|+|++..
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~l-----LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEI-----LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCE-----EEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence 45568899999999999997 566 8899999999999997642 234566664 667999999875
Q ss_pred EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCc--
Q 024185 105 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNT-- 182 (271)
Q Consensus 105 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-- 182 (271)
+++++.|+.|++||+++++. ...+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|.+...
T Consensus 141 LaSgS~DgtIrIWDl~tg~~----~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKR----AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence 57889999999999998774 34443 557899999999999999999999999999999999998888876411
Q ss_pred -eeeEEECCCCCEEEEecCCC----cEEEEEcCC-ceeEEEec--CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 183 -NTEATFTPDGQYVVSGSGDG----TLHAWNINT-RNEVACWN--GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 183 -v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
+....|+++++++++++.|+ .|++||+++ ++++..+. .+.+.+......++|.++++|+ ++|++|++..+
T Consensus 216 ~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 216 NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 22234578999999887764 799999995 55665543 2333333333345588888885 88999999776
Q ss_pred C
Q 024185 253 S 253 (271)
Q Consensus 253 ~ 253 (271)
.
T Consensus 296 ~ 296 (568)
T PTZ00420 296 S 296 (568)
T ss_pred c
Confidence 4
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=9.2e-31 Score=203.25 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=179.3
Q ss_pred EEEEEcccccceEEeeEEec-CCchhhhhhhhhhccCceEEEEEecC-cceeEEEecCC--cceEEEcCCCCEEEEEecC
Q 024185 36 MIIEFFATSKGIRRGLFLSA-CLQLMIALCLVLLTTALEYGIFVLML-ASFQGILRLRG--RPTVAFDQQGLVFAVAMEA 111 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d 111 (271)
..+..+.+|...|+++.|.| .+.+ |++++.|+.|+||++.. +++++++.+|. +..++|+++|..+.+++.|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hL-----lLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHL-----LLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred hheeeccCCccccchhhhccceeeE-----EEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 45677899999999999999 6666 88999999999999876 88999999996 4559999999999999999
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
+.+++||+++++. ...+. ....++|+.|.||+ +.+++|+.|+.|+.||+++++.++.+..|-+. +..+.|-+
T Consensus 280 ~~lKlwDtETG~~----~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~--i~~i~F~~ 352 (503)
T KOG0282|consen 280 RFLKLWDTETGQV----LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA--ILDITFVD 352 (503)
T ss_pred eeeeeeccccceE----EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh--eeeeEEcc
Confidence 9999999999996 43332 23578999999988 88899999999999999999999888877765 99999999
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEE----------------------------------------------EecCCc--
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVA----------------------------------------------CWNGNI-- 222 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------------------~~~~~~-- 222 (271)
+|+++++.++|++++||+.+.+-.++ .+++|.
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 99999999999999999976543221 123443
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.-..+.|||||++|++|+ |.+.+||.++-++....+
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence 3346789999999999998 889999999977766554
No 50
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=204.16 Aligned_cols=230 Identities=15% Similarity=0.167 Sum_probs=199.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEE-cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEF-FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
..+..+..+..+..++...+ ..+.. +.+|.+.+.++++...+.. +++|+.|.++++||..+|++...+.+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~~-----lvsgS~D~t~rvWd~~sg~C~~~l~g 289 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGDK-----LVSGSTDKTERVWDCSTGECTHSLQG 289 (537)
T ss_pred CeEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCCE-----EEEEecCCcEEeEecCCCcEEEEecC
Confidence 34445566677777877777 44444 9999999999999986666 88999999999999999999999999
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
|.....+++-...++++|+.|.+|++|+++++.. ...+.+|.++|.++..+ +.++++|+.|++|++||..++++
T Consensus 290 h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~----l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 290 HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC----LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred CCceEEEEEccCceEeeccCCceEEEEeccCcce----EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 9877777777788899999999999999998886 66666799999999998 78999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
++.+.+|... |.++.+.+. +.+++|+.|++|++||+++. +++.++.+|.+-+..+.+ .+++|++++ ++|++|
T Consensus 364 l~sl~gH~~~--V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 364 LKSLSGHTGR--VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLW 438 (537)
T ss_pred eeeecCCcce--EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEe
Confidence 9999998876 988888765 89999999999999999999 999999999998866655 577899888 899999
Q ss_pred cCCCCCCCcCCCCC
Q 024185 248 IPNPSSNSTDESTD 261 (271)
Q Consensus 248 ~~~~~~~~~~~~~~ 261 (271)
|.+++++....+..
T Consensus 439 D~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 439 DAEEGECLRTLEGR 452 (537)
T ss_pred ecccCceeeeeccC
Confidence 99999888776653
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.5e-27 Score=210.91 Aligned_cols=231 Identities=13% Similarity=0.183 Sum_probs=182.4
Q ss_pred ecceeEEeeecceeeEEEEeeccceee----EEEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcc
Q 024185 9 PITQALLFARQNIILILLESLCGIYQC----MIIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
|..+.++.+..++.+.+|+......+. .....+.+ ...+.+++|++. +.. +++++.||+|++||+.+++
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~-----las~~~Dg~v~lWd~~~~~ 566 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQ-----VASSNFEGVVQVWDVARSQ 566 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCE-----EEEEeCCCeEEEEECCCCe
Confidence 344556666778899888753211100 01111222 456788899875 455 7899999999999999999
Q ss_pred eeEEEecCC--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc-CCCcEEEEEecCCe
Q 024185 84 FQGILRLRG--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS-NDGKSMLLTTTNNN 159 (271)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~ 159 (271)
.+..+.+|. +.+++|+| ++.+|++|+.|+.|++||++++.. ...+..+ ..+.++.|+ +++.+|++|+.|+.
T Consensus 567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~ 641 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----IGTIKTK-ANICCVQFPSESGRSLAFGSADHK 641 (793)
T ss_pred EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCe
Confidence 888888875 66799997 789999999999999999988764 3444433 679999995 57999999999999
Q ss_pred EEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC------ceeEEEecCCcceeEEEEEec
Q 024185 160 IYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT------RNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 160 i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~s~ 232 (271)
|++||+++++ ....+..|... |.++.|. ++.++++++.|+.|++||++. .+++..+.+|...+..++|+|
T Consensus 642 I~iwD~~~~~~~~~~~~~h~~~--V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~ 718 (793)
T PLN00181 642 VYYYDLRNPKLPLCTMIGHSKT--VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV 718 (793)
T ss_pred EEEEECCCCCccceEecCCCCC--EEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC
Confidence 9999998765 45566667655 9999996 778999999999999999974 356788999999999999999
Q ss_pred CCcEEEEeC--CeEEEEcCCCCC
Q 024185 233 RRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
++.+|++|+ +.+++|+.....
T Consensus 719 ~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 719 SDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCCCC
Confidence 999999998 889999976543
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-28 Score=196.50 Aligned_cols=226 Identities=12% Similarity=0.094 Sum_probs=191.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEccc-ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFAT-SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
+..+.|.++..+|.+.+++.... ...+.+.+ |...|.+++|.. .. +.+|+.|+.|..+|++..+....
T Consensus 227 ~~G~~LavG~~~g~v~iwD~~~~----k~~~~~~~~h~~rvg~laW~~--~~-----lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 227 PDGSHLAVGTSDGTVQIWDVKEQ----KKTRTLRGSHASRVGSLAWNS--SV-----LSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CCCCEEEEeecCCeEEEEehhhc----cccccccCCcCceeEEEeccC--ce-----EEEecCCCcEEEEEEecchhhhh
Confidence 44578999999999999997766 44455777 999999999993 33 56999999999999998775544
Q ss_pred -EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEe--cCCeEE
Q 024185 88 -LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTT--TNNNIY 161 (271)
Q Consensus 88 -~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~d~~i~ 161 (271)
+.+|. +..++|++|++++|+|+.|+.+.|||....+. .+.+..|.+.|..++|+| ....||+|+ .|+.|+
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 66664 55599999999999999999999999966554 677789999999999999 566788875 499999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec--CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEE
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS--GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+||..+++.+..+.... +|.++.|++..+-++++. .++.|.||+..+.+.+..+.+|...|..++++|||..+++
T Consensus 372 fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 372 FWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 99999999888765433 499999999987777653 3678999999999999999999999999999999999999
Q ss_pred eC--CeEEEEcCCCC
Q 024185 240 AS--SVLSFWIPNPS 252 (271)
Q Consensus 240 ~~--~~v~iw~~~~~ 252 (271)
|+ .++++|++-..
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 98 78999998764
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=8.6e-28 Score=188.73 Aligned_cols=211 Identities=13% Similarity=0.195 Sum_probs=176.4
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee--EEEecC--CcceEEEcCCCCEEEEEecC
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ--GILRLR--GRPTVAFDQQGLVFAVAMEA 111 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~--~~~~~~~~~~~~~l~~~~~d 111 (271)
.....|..|...++...+||.|-+ +++|...|+|||||....+.+ ..++.- .+.-++|++|+++|++.++.
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~y-----iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFY-----IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred cceeeeccccceeEEEEeCCCceE-----EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 445668999999999999999998 899999999999998664432 233332 34559999999999888643
Q ss_pred ----CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeE
Q 024185 112 ----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 112 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 186 (271)
|.+.+||.-+ . .-.+.+|...|.+++|-|.. -+++++++|+.+.+|+-.-.+...++..|.. .|.++
T Consensus 125 rerfg~~F~~DSG~--S----vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~V 196 (603)
T KOG0318|consen 125 RERFGHVFLWDSGN--S----VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCV 196 (603)
T ss_pred ccceeEEEEecCCC--c----cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeE
Confidence 4677888644 2 44567999999999999964 4689999999999999766666666666665 59999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.|+|||+++++.+.||.+.+||-.+++.+..+. +|.+.|.+++|+||+..++++| .+++|||..+.++.++..
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 999999999999999999999999999999997 8999999999999999999998 779999999998877654
No 54
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=187.90 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=180.2
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 124 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 124 (271)
.+..+...|.... +++|+.|..+.++|...++.+.++++|.. ..+.++|+...+++++.|..|++|.......
T Consensus 221 gi~ald~~~s~~~-----ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 221 GITALDIIPSSSK-----ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CeeEEeecCCCCc-----ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 4556777776455 77999999999999999999999999975 4489999999999999999999999877664
Q ss_pred CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 125 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
......|..+|+.+..+|.|.||++++.|++..+.|.+++..+...........+++.+|+|||..+.+|..||.+
T Consensus 296 ----~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~v 371 (506)
T KOG0289|consen 296 ----PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVV 371 (506)
T ss_pred ----ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceE
Confidence 4456679999999999999999999999999999999999988877655454668999999999999999999999
Q ss_pred EEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 205 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+|||++++.....|++|.++|..++|+.+|.+|++++ +.|++||++..+......
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 9999999999999999999999999999999999998 669999998877554443
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.2e-29 Score=179.22 Aligned_cols=225 Identities=15% Similarity=0.160 Sum_probs=185.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
..++.+..+|.+.+++.... ...+..|+.|+..|.++.+++..+.. +++++.|++|++|+...++.++++.+|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~Svdwn~~~r~~----~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYSVDWNTVRRRI----FLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred ceEEEEecCceEEEeccCCC---CcchhHHHhhhhheEEecccccccee----EEeeccCCceEeecCCCCcceEeecCC
Confidence 34555566899999995333 23567799999999999999977664 668899999999999999999999998
Q ss_pred C--cceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCC
Q 024185 92 G--RPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 92 ~--~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~ 167 (271)
. +...+|+| ..+.+++++.|+.+++||++.... ...+..|...+.|+.|+. +...+++|+.|+.|+.||+++
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 7 45589999 468999999999999999987664 444778999999999998 677889999999999999987
Q ss_pred Ce-EEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCce-eEEEecCCcceeEEEEEec-CCcEEEEeC--
Q 024185 168 GE-KRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAP-RRAMFVAAS-- 241 (271)
Q Consensus 168 ~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-- 241 (271)
-+ ++..+.+|.-. |+.+.|||.. ..|++++.|=+++|||...+. .+.+...|..-+..+.||+ ++.++|+++
T Consensus 223 ~r~pl~eL~gh~~A--VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 223 LRTPLFELNGHGLA--VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred ccccceeecCCceE--EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccc
Confidence 54 45666666654 9999999974 578899999999999998554 4556677888899999998 466899888
Q ss_pred CeEEEEcC
Q 024185 242 SVLSFWIP 249 (271)
Q Consensus 242 ~~v~iw~~ 249 (271)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 78999985
No 56
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=9.3e-28 Score=184.51 Aligned_cols=228 Identities=14% Similarity=0.173 Sum_probs=193.3
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
..+.++.+..+..++.++...+ +.+..|.+|...+..+.++|+... +++++.|..|++|............
T Consensus 230 s~~~ilTGG~d~~av~~d~~s~----q~l~~~~Gh~kki~~v~~~~~~~~-----v~~aSad~~i~vws~~~~s~~~~~~ 300 (506)
T KOG0289|consen 230 SSSKILTGGEDKTAVLFDKPSN----QILATLKGHTKKITSVKFHKDLDT-----VITASADEIIRVWSVPLSSEPTSSR 300 (506)
T ss_pred CCCcceecCCCCceEEEecchh----hhhhhccCcceEEEEEEeccchhh-----eeecCCcceEEeeccccccCccccc
Confidence 3355666666777888877666 677889999999999999999988 8899999999999987777666666
Q ss_pred cCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 90 LRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 90 ~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
.|. ++.+..+|.|.||++++.|++..+.|++++.. +....-+...-.+++.+|+|||-.|.+|..|+.+++||+.+
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 665 55689999999999999999999999999885 22222222334589999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEeCCeEEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAASSVLSF 246 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~v~i 246 (271)
+..+..|.+|..+ |..++|+.+|-||+++++|+.|++||++..+..+++.-. ...+.++.|.+.|.+|+.++.+++|
T Consensus 379 ~~~~a~Fpght~~--vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPGHTGP--VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCCCCCc--eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9999999998877 999999999999999999999999999988877776432 2369999999999999999988888
Q ss_pred EcCC
Q 024185 247 WIPN 250 (271)
Q Consensus 247 w~~~ 250 (271)
|-..
T Consensus 457 y~~~ 460 (506)
T KOG0289|consen 457 YICK 460 (506)
T ss_pred EEEe
Confidence 8776
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=172.39 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=192.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.++.-+..+..+..++..... ...-..+.+|.+.+..++|+|...-. |++++.|.+|++||++.+++...+...
T Consensus 33 ~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~----~atas~dk~ir~wd~r~~k~~~~i~~~ 106 (313)
T KOG1407|consen 33 TKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDL----FATASGDKTIRIWDIRSGKCTARIETK 106 (313)
T ss_pred ceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcc----eEEecCCceEEEEEeccCcEEEEeecc
Confidence 455666667777666655441 11223367888888889998876554 779999999999999999999988777
Q ss_pred Ccce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 92 GRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 92 ~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
..+. +.|+|+|+++++++.|..|...|.++.+. . .-......+..+.|+.++.+++..+..|.|.|.....-++
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~----~-~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp 181 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKI----V-NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP 181 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccce----e-ehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc
Confidence 6555 99999999999999999999999998764 2 1122345688899998888888888889999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
+..++.|... +.|+.|+|+|+++|+|+.|..+.+||+...-+.+.+..+..+|..++||.||++||++| .-|-|=+
T Consensus 182 v~si~AH~sn--CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 182 VQSIKAHPSN--CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred ccccccCCcc--eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEe
Confidence 9999999866 89999999999999999999999999999999999999999999999999999999999 3366666
Q ss_pred CCCCCCCcCC
Q 024185 249 PNPSSNSTDE 258 (271)
Q Consensus 249 ~~~~~~~~~~ 258 (271)
.++|....+.
T Consensus 260 vetGd~~~eI 269 (313)
T KOG1407|consen 260 VETGDRVWEI 269 (313)
T ss_pred cccCCeEEEe
Confidence 6666554443
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-28 Score=173.93 Aligned_cols=223 Identities=16% Similarity=0.176 Sum_probs=177.5
Q ss_pred cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEecCC--cce
Q 024185 19 QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRLRG--RPT 95 (271)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~~ 95 (271)
.+|.+.+++...+. .......|.. .+....++|++..... +++++.||++++||+. ...+++.++.|. +.+
T Consensus 36 G~G~L~ile~~~~~-gi~e~~s~d~-~D~LfdV~Wse~~e~~----~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 36 GNGRLFILEVTDPK-GIQECQSYDT-EDGLFDVAWSENHENQ----VIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYS 109 (311)
T ss_pred cCceEEEEecCCCC-CeEEEEeeec-ccceeEeeecCCCcce----EEEEecCceEEEeccCCCCcchhHHHhhhhheEE
Confidence 36788888875321 1122333443 3456779999987765 5689999999999964 345777887774 666
Q ss_pred EEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEE
Q 024185 96 VAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 96 ~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
+.|++- .+.+++++.|++|++|+...++. ..++.+|..-|...+|+| .++++++++.|+.+++||++.......
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 888874 45778889999999999987776 677889999999999999 688999999999999999987555555
Q ss_pred eecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEc
Q 024185 174 FSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWI 248 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~ 248 (271)
+..|... +.++.|+. +.+.+++|+.|+.|+.||+++ ..++..+.+|.-.|..+.|||.. .+|++++ =+++|||
T Consensus 186 i~ah~~E--il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 186 IEAHNSE--ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred EEeccce--eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 8888855 99999986 566888999999999999987 45678889999999999999975 5788888 6799999
Q ss_pred CCCCC
Q 024185 249 PNPSS 253 (271)
Q Consensus 249 ~~~~~ 253 (271)
...+.
T Consensus 264 ~~~~d 268 (311)
T KOG0277|consen 264 PERQD 268 (311)
T ss_pred cccch
Confidence 98543
No 59
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1e-27 Score=185.12 Aligned_cols=239 Identities=13% Similarity=0.163 Sum_probs=182.1
Q ss_pred eecceeEEee-ecceeeEEEEeeccceeeEEE------EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec
Q 024185 8 LPITQALLFA-RQNIILILLESLCGIYQCMII------EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM 80 (271)
Q Consensus 8 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~ 80 (271)
||-+..++.+ .+++.+.+++...-...+... -.+.+|++.-.+++|++..... +++++.|++|.+||+.
T Consensus 133 mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~----Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 133 MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT----LLSGSDDHTICLWDIN 208 (422)
T ss_pred CCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccccee----EeeccCCCcEEEEecc
Confidence 5556666654 557778887765432222111 1466777767779999877653 7899999999999996
Q ss_pred Ccc-------eeEEEecCC--cceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCc
Q 024185 81 LAS-------FQGILRLRG--RPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGK 149 (271)
Q Consensus 81 ~~~-------~~~~~~~~~--~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 149 (271)
... +...+.+|+ +.-++|++- ...|++++.|+.+.|||+++++. .......+|.+++.|++|+| ++.
T Consensus 209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~~~~~~ah~~~vn~~~fnp~~~~ 286 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KPSHSVKAHSAEVNCVAFNPFNEF 286 (422)
T ss_pred ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CCcccccccCCceeEEEeCCCCCc
Confidence 432 345567776 444999985 46888999999999999996422 22556779999999999999 667
Q ss_pred EEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCc--------------e
Q 024185 150 SMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTR--------------N 213 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~--------------~ 213 (271)
.||+|+.|++|.+||+|+- +++.++..|... |.++.|+|. ...|++++.|+.+.+||+..- +
T Consensus 287 ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de--v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLNKPLHTFEGHEDE--VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred eEEeccCCCcEEEeechhcccCceeccCCCcc--eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence 7889999999999999974 567888888877 999999997 457888999999999998641 2
Q ss_pred eEEEecCCcceeEEEEEecCCcEEEE-eC--CeEEEEcCCCCCC
Q 024185 214 EVACWNGNIGVVACLKWAPRRAMFVA-AS--SVLSFWIPNPSSN 254 (271)
Q Consensus 214 ~~~~~~~~~~~v~~~~~s~~~~~l~~-~~--~~v~iw~~~~~~~ 254 (271)
++..-.||.+.|..+.|+|+..++++ .+ +.+.||.+...-.
T Consensus 365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIY 408 (422)
T ss_pred eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccccc
Confidence 34555789999999999999886554 44 7899999975433
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=182.36 Aligned_cols=214 Identities=16% Similarity=0.192 Sum_probs=176.7
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC------------c------ceeEEEecC--CcceEE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML------------A------SFQGILRLR--GRPTVA 97 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~--~~~~~~ 97 (271)
..++..|++...+.+|+|||.+ +++|+.|..|+|.|.+. + ..++++-.| +++++.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~l-----vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSL-----VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred eEEEeecccceeeeeeCCCCcE-----EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 3456789999999999999999 99999999999999872 1 134455444 578899
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee-c
Q 024185 98 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-L 176 (271)
Q Consensus 98 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~ 176 (271)
|+|....|++|+.|++|+++|...... ...+..-....+|.++.|+|.|.+|++|.....+++||+.+.++...-. .
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~sa--KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSA--KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHH--HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 999999999999999999999976443 1122222345689999999999999999999999999999988765433 2
Q ss_pred CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-cCCc-ceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 177 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 177 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
.++...|+++.+++.+++.++++.||.|++||--+++++.++ .+|. ..|.+..|..+|+++++.+ ..+++|.+.++
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 233366999999999999999999999999999999999887 4554 4789999999999999998 67999999998
Q ss_pred CCCcCC
Q 024185 253 SNSTDE 258 (271)
Q Consensus 253 ~~~~~~ 258 (271)
+.+.+.
T Consensus 338 R~l~~Y 343 (430)
T KOG0640|consen 338 RMLKEY 343 (430)
T ss_pred ceEEEE
Confidence 876544
No 61
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2e-27 Score=178.90 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=180.3
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i 114 (271)
.+..|..|+..+.+++.+|+.++ +++|+.|..-.+|++.++.....+.+|. +.++.|+.+|.+||+|..+|.|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l-----~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNL-----VATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCce-----EEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 34568999999999999998887 8899999999999999999888998885 6779999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++|+..++.. ...+...-..+.-+.|+|-+..|++|+.||.+.+|.+.++...+.+.+|..+ +++-.|.|+|+.
T Consensus 131 ~v~~~stg~~----~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f~pdGKr 204 (399)
T KOG0296|consen 131 LVFKVSTGGE----QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEFIPDGKR 204 (399)
T ss_pred EEEEcccCce----EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccccCCCce
Confidence 9999999886 5555555677899999999999999999999999999998888889888876 889999999999
Q ss_pred EEEecCCCcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
++++..||+|++|+++++.++..+... .....++.++..+..++.|+ +.+++-+..+++.+.-.
T Consensus 205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 999999999999999999999988532 23456777777777777776 55666666665554433
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1e-29 Score=189.29 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=173.5
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec----------CCcceEEEcCCCCEEEEEecCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL----------RGRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~d~ 112 (271)
+.+..+.|..|||||++ +++|+.||.|.+||.-+|+..+.++- ..+.|+.|+.|...+|+|+.||
T Consensus 211 g~KSh~EcA~FSPDgqy-----LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQY-----LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccccchhheeeCCCCce-----EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 34567888999999999 99999999999999999886655422 2467899999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEec-CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVG-GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
.|++|.++++.+ ...+. +|...|+|+.||.|+..+++++.|.++++.-+.+|+++..+.+|..- |+...|++|
T Consensus 286 kIKvWri~tG~C----lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy--vn~a~ft~d 359 (508)
T KOG0275|consen 286 KIKVWRIETGQC----LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY--VNEATFTDD 359 (508)
T ss_pred cEEEEEEecchH----HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc--ccceEEcCC
Confidence 999999999987 44444 79999999999999999999999999999999999999999999875 999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCceeEEEecC--CcceeEEEEEecC-CcEEEEeC--CeEEEEcCCCCCC
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPR-RAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~-~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
|.++++++.||+|++|+.++.+++.+++. ...+|+++-.-|. ...++.|. +++.|-++...-.
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 99999999999999999999999998854 3457888887774 44666665 7898888866433
No 63
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1.3e-26 Score=182.25 Aligned_cols=207 Identities=13% Similarity=0.178 Sum_probs=181.3
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEE
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLF 117 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~ 117 (271)
.+.+|...++++.|-|...+- +++|+.|++|.+|+=...+...+++.|. +.++.|+|||+++++++.||.+.+|
T Consensus 142 ei~GhSr~ins~~~KpsRPfR----i~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFR----IATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIY 217 (603)
T ss_pred eeeccceeEeeeeccCCCceE----EEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence 378999999999999999874 7799999999999877777777777776 6789999999999999999999999
Q ss_pred eCCCCCCCcceEEEec---CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC-CceeeEEECCCCC
Q 024185 118 DSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQ 193 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 193 (271)
|-.+++. ...+. +|.+.|.+++|+||++.+++++.|.++++||+.+.++++++.....- .+-..+-|- ..
T Consensus 218 DGktge~----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd 291 (603)
T KOG0318|consen 218 DGKTGEK----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KD 291 (603)
T ss_pred cCCCccE----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CC
Confidence 9999986 55555 89999999999999999999999999999999999999988654431 123345564 45
Q ss_pred EEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 194 YVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
.|++.+.+|.|.+++......++.+.+|...|+++..+||+.+|++|+ |.|.-|+..++..-+
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 789999999999999999999999999999999999999999999999 999999998876543
No 64
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=9.6e-27 Score=192.46 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=155.1
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-------------EEEecCC--cceEEEcC-CCCEEEEEecC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-------------GILRLRG--RPTVAFDQ-QGLVFAVAMEA 111 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~--~~~~~~~~-~~~~l~~~~~d 111 (271)
+.....++++.. +++++.+.....|+...+..+ ..+.+|. +.+++|+| ++++|++++.|
T Consensus 23 i~~~~~~~d~~~-----~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 23 VTPSTALWDCSN-----TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cccccccCCCCC-----cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 334445556554 455566666666654333211 1345564 56699999 88999999999
Q ss_pred CeEEEEeCCCCCCC---cceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 112 GAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 112 ~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
++|++||+.+.... ......+.+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+..|... |.+++
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~--V~sla 175 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ--ITSLE 175 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc--eEEEE
Confidence 99999999765320 01245678999999999999975 68999999999999999999988888877765 99999
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce-eEEEEEecCCcEEEEeC------CeEEEEcCCCCC
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV-VACLKWAPRRAMFVAAS------SVLSFWIPNPSS 253 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~------~~v~iw~~~~~~ 253 (271)
|+|+|++|++++.|+.|++||+++++.+..+.+|.+. ...+.|.+++..+++++ +.|++||+++..
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 9999999999999999999999999999999888764 45678999887777653 579999997643
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.8e-27 Score=179.06 Aligned_cols=237 Identities=15% Similarity=0.198 Sum_probs=184.6
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee----EE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ----GI 87 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~ 87 (271)
..++-++-+|.+..++.... ....+.+|.+++..+++.-....-.. |++++.|.++++|.++.++.. +.
T Consensus 116 ~~IltgsYDg~~riWd~~Gk-----~~~~~~Ght~~ik~v~~v~~n~~~~~--fvsas~Dqtl~Lw~~~~~~~~~~~~~~ 188 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDLKGK-----SIKTIVGHTGPIKSVAWVIKNSSSCL--FVSASMDQTLRLWKWNVGENKVKALKV 188 (423)
T ss_pred ceEEEeecCCeeEEEecCCc-----eEEEEecCCcceeeeEEEecCCccce--EEEecCCceEEEEEecCchhhhhHHhH
Confidence 45666677888877776544 33447899999997766432222111 789999999999999877532 22
Q ss_pred EecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC---------------------CcceEEEecCCccceEEEEE
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK---------------------GPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~ 144 (271)
-++|. +-+++..++|.++++|+.|..+.+|+...... .......+.+|..+|.++.|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 24775 55588899999999999999999999322100 11235567899999999999
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce---eEEEecCC
Q 024185 145 SNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN---EVACWNGN 221 (271)
Q Consensus 145 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~ 221 (271)
++ ...+++++.|.+|+.||+.+++...++..... +.++.++|..++|++|+.|..+++||.+++. ..+++.+|
T Consensus 269 ~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks---l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH 344 (423)
T KOG0313|consen 269 SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS---LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH 344 (423)
T ss_pred cC-CCceEeecccceEEEEEeecccceeeeecCcc---eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc
Confidence 98 56799999999999999999999888776554 8899999999999999999999999998753 35678999
Q ss_pred cceeEEEEEecCCc-EEEEeC--CeEEEEcCCCCC-CCcCCC
Q 024185 222 IGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS-NSTDES 259 (271)
Q Consensus 222 ~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~-~~~~~~ 259 (271)
...|.++.|+|... +|++++ +++++||+++.+ ++....
T Consensus 345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 99999999999655 677777 999999999876 444433
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5e-27 Score=194.70 Aligned_cols=238 Identities=11% Similarity=0.094 Sum_probs=198.1
Q ss_pred EeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 6 FALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
...|.+.-.+-+..+-.+..|+.... +.+-.+.+|-+-|..+.|++.-.+ ++|++.|.+|+||++.+++++
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~r----rclftL~GHlDYVRt~~FHheyPW-----IlSASDDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHLDYVRTVFFHHEYPW-----ILSASDDQTIRIWNWQSRKCI 128 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccc----eehhhhccccceeEEeeccCCCce-----EEEccCCCeEEEEeccCCceE
Confidence 33444444444556677777776555 555668899999999999999999 999999999999999999999
Q ss_pred EEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC-------------------------CcceEEEecCCccc
Q 024185 86 GILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK-------------------------GPFDTFLVGGDTAE 138 (271)
Q Consensus 86 ~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------~~~~~~~~~~~~~~ 138 (271)
..+.+|. +.|..|+|....+++++-|.+|++||+..-+. ..+..+.+.||...
T Consensus 129 avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 9999987 56688999999999999999999999854211 11234567899999
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE
Q 024185 139 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 216 (271)
|..++|+|.-..+++|+.|..|++|.+...+. +.+..+|.++ |.++-|+|..+++++.++|++|++||+...+.++
T Consensus 209 VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn--Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 209 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN--VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC--cceEEecCccceeEecCCCccEEEEeccccccee
Confidence 99999999999999999999999999876543 4456677766 9999999999999999999999999999999999
Q ss_pred EecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCC
Q 024185 217 CWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 217 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~ 254 (271)
+++.....-+.++-+|..+++++|- +-+.+|.++..++
T Consensus 287 tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 287 TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 9976677889999999999999997 6677777765443
No 67
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.5e-26 Score=192.49 Aligned_cols=182 Identities=8% Similarity=0.046 Sum_probs=149.9
Q ss_pred hhccCceEEEEEecCcceeEEEecCC--cceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCc----ceEEEecCCccce
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGP----FDTFLVGGDTAEV 139 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~v 139 (271)
.|+.++.+++|+..+...+..+.+|. +.+++|+|+ +++|++|+.|+.|++||+.+..... .....+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 56789999999998877888888885 566999997 7899999999999999997643100 1133567899999
Q ss_pred EEEEEcCCCcEE-EEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe
Q 024185 140 CDIKFSNDGKSM-LLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 140 ~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 218 (271)
.+++|+|++..+ ++++.|++|++||+++++....+. +.. .+.+++|+|+|++|++++.|+.|++||+++++.+..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC--cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 999999988764 688999999999999998777665 333 4999999999999999999999999999999999999
Q ss_pred cCCcceeEE-----EEEecCCcEEEEeC--C----eEEEEcCCC
Q 024185 219 NGNIGVVAC-----LKWAPRRAMFVAAS--S----VLSFWIPNP 251 (271)
Q Consensus 219 ~~~~~~v~~-----~~~s~~~~~l~~~~--~----~v~iw~~~~ 251 (271)
.+|.+.+.. ..|++++.+|++++ + .|+|||++.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 999875433 33558888888875 2 599999985
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=183.00 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=198.8
Q ss_pred eecceeEEeeecceeeEEEEeeccceee----EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQC----MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
-|..+.|+-+.-+|-+..|+..+|.... .....|--++.+|.|+.||.|... +++|+.||.|++|.+++|.
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM-----lAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM-----LASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH-----hhccCcCCcEEEEEEecch
Confidence 3666777778889999999988875432 123345567889999999999998 9999999999999999999
Q ss_pred eeEEEe-cC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeE
Q 024185 84 FQGILR-LR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 160 (271)
Q Consensus 84 ~~~~~~-~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 160 (271)
+++.|. .| ++.|+.|+.|+..+.+++.|.++++.-+..++. ...+.+|...|+...|++||..+++++.||+|
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~----LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC----LKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh----HHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 999985 44 688999999999999999999999999999997 66678999999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCC---------------------------------------------CCCceeeEEECCCCCEE
Q 024185 161 YVLDAYGGEKRCGFSLEP---------------------------------------------SPNTNTEATFTPDGQYV 195 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~---------------------------------------------~~~~v~~~~~~~~~~~l 195 (271)
++|+..+.+++.+|+... ..+...+.+.+|.|.++
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWI 452 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEE
Confidence 999998776655443211 11234566789999999
Q ss_pred EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 196 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
++.++|+.++.+.+.+|+.-.++.-|...+..++-+|..+++++-+ |.+++|.
T Consensus 453 YcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999887 8899995
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=8.6e-28 Score=177.79 Aligned_cols=177 Identities=15% Similarity=0.243 Sum_probs=152.0
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee---EEE-ecCCcceEEEcCCCCEEEEEecCC
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ---GIL-RLRGRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~d~ 112 (271)
.++.+-.|...|+++.|+|.... |++++.|++|++||+...... +.+ ..+.+.+++|+|.|.+|++|.+..
T Consensus 164 vIRTlYDH~devn~l~FHPre~I-----LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETI-----LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred eEeehhhccCcccceeecchhhe-----EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence 56777789999999999999998 999999999999999764432 333 345688899999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
.+++||+++.++- .....-.+|.+.|+++.+++.|++.++++.||.|++||--+++++.++...-+...|.+..|..+|
T Consensus 239 ~~rlYdv~T~Qcf-vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 239 TLRLYDVNTYQCF-VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG 317 (430)
T ss_pred ceeEEeccceeEe-eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence 9999999998751 111234578999999999999999999999999999999999999988655455679999999999
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
+|+++.+.|..+++|.+.+++++..+.
T Consensus 318 kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 318 KYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEeecCCcceeeeeeecCCceEEEEe
Confidence 999999999999999999999887764
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=183.33 Aligned_cols=228 Identities=13% Similarity=0.190 Sum_probs=187.4
Q ss_pred EEeeecceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 5 VFALPITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 5 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
|.++...+.+++. .++..+..|+..++ ..+..+-+|..+|..+.|+.. + +++++.|.++.+||+....
T Consensus 240 VLCLqyd~rviisGSSDsTvrvWDv~tg----e~l~tlihHceaVLhlrf~ng--~-----mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 240 VLCLQYDERVIVSGSSDSTVRVWDVNTG----EPLNTLIHHCEAVLHLRFSNG--Y-----MVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred EEeeeccceEEEecCCCceEEEEeccCC----chhhHHhhhcceeEEEEEeCC--E-----EEEecCCceeEEEeccCch
Confidence 4566666666665 56889999999888 666778899999999999864 3 5699999999999997654
Q ss_pred ---eeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC
Q 024185 84 ---FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN 158 (271)
Q Consensus 84 ---~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 158 (271)
+.+.+.+|. ++++.| +.+++++++.|.+|++|++.+.+. ...+.+|...|.|+.+. |+++++|+.|.
T Consensus 309 ~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~ef----vRtl~gHkRGIAClQYr--~rlvVSGSSDn 380 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEF----VRTLNGHKRGIACLQYR--DRLVVSGSSDN 380 (499)
T ss_pred HHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceee----ehhhhcccccceehhcc--CeEEEecCCCc
Confidence 234456774 455666 566999999999999999999887 77889999999999875 78999999999
Q ss_pred eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee---------EEEecCCcceeEEEE
Q 024185 159 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE---------VACWNGNIGVVACLK 229 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~ 229 (271)
+|++||+..|.+++.+++|..- |.++.|+ .+.+++|+.||+|++||+..+.. +..+..|.+.|..+.
T Consensus 381 tIRlwdi~~G~cLRvLeGHEeL--vRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 381 TIRLWDIECGACLRVLEGHEEL--VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred eEEEEeccccHHHHHHhchHHh--hhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 9999999999999999999987 8889984 56899999999999999976543 344567889999999
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
|. ...+++++ .+|.|||+..+..-..
T Consensus 457 FD--~fqIvsssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 457 FD--EFQIISSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred ec--ceEEEeccCCCeEEEEEcCCCCcccc
Confidence 95 55677776 7899999988765543
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=7e-28 Score=188.95 Aligned_cols=209 Identities=12% Similarity=0.158 Sum_probs=165.8
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-------eeEEEecCCcceEEEcCCCCEEEEEecCC
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-------FQGILRLRGRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 112 (271)
.+.+|+..|..+++.|.|.. |++|+.|-+|++||+.... .+.--..|.+.++.|++.|..|++.+...
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR-----~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGAR-----FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred eccCCceEEEEeeecCCCce-----eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 37899999999999999998 9999999999999996422 22223567789999999999999888889
Q ss_pred eEEEEeCCCCCCC--------cceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCe-EEEEeec---CCC
Q 024185 113 AIKLFDSRSYDKG--------PFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGE-KRCGFSL---EPS 179 (271)
Q Consensus 113 ~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~---~~~ 179 (271)
..+++|....+.. .......+||...++|-+|+|+ ...+++++.||++++||+.+.+ .+..++. ...
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999998765431 1112335689999999999995 4568899999999999997643 2333332 222
Q ss_pred CCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee---EEEecCCcc--eeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 180 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
...++.++|+|||+++|+|+.||+|.+|+..+... ...-.+|.. .|+++.||+||++|++-+ +++++||++..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 25688899999999999999999999999765332 333466766 899999999999999988 88999999875
Q ss_pred C
Q 024185 253 S 253 (271)
Q Consensus 253 ~ 253 (271)
+
T Consensus 397 k 397 (641)
T KOG0772|consen 397 K 397 (641)
T ss_pred c
Confidence 4
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=9.6e-27 Score=168.74 Aligned_cols=208 Identities=15% Similarity=0.127 Sum_probs=181.5
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+++|+.+++.+.++.+|.+ |.+++.|.+..+|-..+|+.+.++.+|. ++++..+.+.+++++|+.|.++++||
T Consensus 6 l~GHERplTqiKyN~eGDL-----lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDL-----LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cccCccccceEEecCCCcE-----EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 6789999999999999999 8999999999999999999999999995 67899999999999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-----CCeEEEEECC-------CCeEEEEeecCCCCCceeeE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAY-------GGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~-------~~~~~~~~~~~~~~~~v~~~ 186 (271)
+++++. ....+ ...+|..+.|+++|++++.... .+.|.++|++ ..++...+..+... ++.+
T Consensus 81 v~tGk~----la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk--it~a 153 (327)
T KOG0643|consen 81 VETGKQ----LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK--ITSA 153 (327)
T ss_pred cCCCcE----EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc--eeee
Confidence 999996 44333 3578999999999998887765 3679999998 34556666666654 8889
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCcee-EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
-|.|-+++|++|.+||.|.+||.++|+. +...+.|...|+.+.++||..+++++| .+-++||..+..+++...+
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 9999999999999999999999999855 555578999999999999999999999 7799999999887776653
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-26 Score=169.50 Aligned_cols=201 Identities=15% Similarity=0.185 Sum_probs=166.0
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCC--EEEEEecCCe
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGL--VFAVAMEAGA 113 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~d~~ 113 (271)
+-.|..|.+.+++++.+ +.+ ++||+.|.+|+|||+.+......+-.|. ++++.|.++-. .|++|+.||.
T Consensus 36 lF~~~aH~~sitavAVs--~~~-----~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPY-----VASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccccccccceeEEEec--cee-----EeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 34467889999988876 567 8899999999999999988888887664 67799988764 8999999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC---
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--- 190 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~--- 190 (271)
|.+|+....+. ...+++|.+.|+.++.+|.+++.++.+.|+.+++||+-+|+.-..++.... ...+.|+|
T Consensus 109 i~iw~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd 181 (362)
T KOG0294|consen 109 IIIWRVGSWEL----LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGD 181 (362)
T ss_pred EEEEEcCCeEE----eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCC
Confidence 99999988765 777889999999999999999999999999999999977765443332221 11133333
Q ss_pred ------------------------------------CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEE--ec
Q 024185 191 ------------------------------------DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKW--AP 232 (271)
Q Consensus 191 ------------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~ 232 (271)
++..+++|++|+.|.+||..+..+...+.+|...|.++.+ .|
T Consensus 182 ~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP 261 (362)
T ss_pred EEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC
Confidence 3456778899999999999999999999999999999985 55
Q ss_pred CCcEEEEeC--CeEEEEcCCCC
Q 024185 233 RRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~ 252 (271)
++.+|+++| |.|++||++..
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEEeccCceEEEEEcccc
Confidence 688999997 99999999876
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-27 Score=184.61 Aligned_cols=208 Identities=13% Similarity=0.167 Sum_probs=172.9
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcc--eEEEcCCC-CEEEEEecCCeEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRP--TVAFDQQG-LVFAVAMEAGAIK 115 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~-~~l~~~~~d~~i~ 115 (271)
+.+...+..+.++.|-.||+. ++.|+..|.|++||..+...++.+..|..+ ...|+|++ ..+++|++|+.++
T Consensus 62 k~~srFk~~v~s~~fR~DG~L-----laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRL-----LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhHHhhccceeEEEeecCCeE-----EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 335566778999999999999 899999999999998776677788887654 48999966 5677788889999
Q ss_pred EEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCC
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
+||+.+... ...+.+|++.|.|.+|+|. +..+++|+.||.|++||++.. ..+..+. |..+ |.++.+-|.|.
T Consensus 137 ~~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p--Ve~vl~lpsgs 209 (487)
T KOG0310|consen 137 YWDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP--VESVLALPSGS 209 (487)
T ss_pred EEEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc--eeeEEEcCCCC
Confidence 999998773 6678899999999999994 568899999999999999987 5555554 5555 99999999999
Q ss_pred EEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 194 YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.+++++.+ .+++||+.+ ++.+..+..|...|+|+.+..++..|++++ +.+++||+.+.+......
T Consensus 210 ~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 210 LIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred EEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence 99988854 799999985 455566666999999999999999999999 999999987766654443
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-27 Score=190.33 Aligned_cols=236 Identities=13% Similarity=0.120 Sum_probs=200.4
Q ss_pred ecceeEEeeecceeeEEEEeecccee--eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--ce
Q 024185 9 PITQALLFARQNIILILLESLCGIYQ--CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA--SF 84 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~ 84 (271)
|.++.|+-+..+|.+..++....... ......++.|..-++.++...+++. |+|++.|-+|++|+...+ -+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t-----lIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT-----LISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc-----eEEecCCceEEEeecccCcchh
Confidence 44455666677888888876543322 1245668999999999999999987 899999999999999877 57
Q ss_pred eEEEecCC--cceEEE-cCCCCEEEEEecCCeEEEEeCCCCCC------CcceEEEec-CCccceEEEEEcCCCcEEEEE
Q 024185 85 QGILRLRG--RPTVAF-DQQGLVFAVAMEAGAIKLFDSRSYDK------GPFDTFLVG-GDTAEVCDIKFSNDGKSMLLT 154 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~ 154 (271)
..++..|. +.|+++ .++...+|+|+-|+.|.+||++++.. .......+. ++..+|++++.++.|..+++|
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 77788886 567888 77888999999999999999997622 111223344 788999999999999999999
Q ss_pred ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCC
Q 024185 155 TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 155 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
+..+.+++||.++++.+..+.+|... |..+..++||+.+++++.||+|++||+...+++.++..|...|+++..+|+-
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdN--Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDN--VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred CcccceEEeccccccceeeeeccccc--eEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 99999999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeC--CeEEEEcCCC
Q 024185 235 AMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 235 ~~l~~~~--~~v~iw~~~~ 251 (271)
..+.+|+ +.|..=|+.+
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ceEEecCCCCcEEecccCC
Confidence 9999998 7788878777
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=181.86 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=160.9
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeEEEecC-------CcceEEEcCCCCEEEEEecCC
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQGILRLR-------GRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-------~~~~~~~~~~~~~l~~~~~d~ 112 (271)
-++|...+++.+|+|..+.. |++++.||++++||+++.+ .++.+... .+..++|++|+++||+|..||
T Consensus 264 TKGHia~lt~g~whP~~k~~----FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEE----FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred cCCceeeeeccccccCcccc----eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 46888899999999998765 7799999999999997654 33444321 245599999999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEecCCcc--ceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEEC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTA--EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~ 189 (271)
.|.+|+.......+. ...-++|.. .|+|++||+||++|++-+.|+++++||++.. +++....+-.....-+.++||
T Consensus 340 SIQ~W~~~~~~v~p~-~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPV-MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ceeeeecCCcccccc-eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 999999865543222 223357777 8999999999999999999999999999875 445554444444445679999
Q ss_pred CCCCEEEEecC------CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 190 PDGQYVVSGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 190 ~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
|+.+++++|.. .|.+.+||..+...++.+.-....|..+.|+|.=+.+..++ |++++|--
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 99999999854 46899999999999999987788899999999766555554 77777643
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=189.49 Aligned_cols=225 Identities=15% Similarity=0.210 Sum_probs=188.6
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
+.+++. ..+.++..|+...+ .....+.+|.+.+.++...+.- +++|+.|.+|++|++++++.+.++.+
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg----~C~~~l~gh~stv~~~~~~~~~-------~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTG----ECTHSLQGHTSSVRCLTIDPFL-------LVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred CCEEEEEecCCcEEeEecCCC----cEEEEecCCCceEEEEEccCce-------EeeccCCceEEEEeccCcceEEEecc
Confidence 444554 55899999998888 5556788999999988877653 44889999999999999999999998
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-e
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-E 169 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~ 169 (271)
|..++-+..-++.++++|+.|++|++||+.+++. ...+.+|...|.++.+.+. ..+++|+.|++|++||+++. +
T Consensus 330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~c----l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKC----LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred ccccEEEEEecCCEEEEEecCceEEEEEhhhcee----eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 8755544444599999999999999999998887 7788899999999988876 78999999999999999999 8
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC-CcceeEEEEEecCCcEEEEeC-CeEEEE
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-NIGVVACLKWAPRRAMFVAAS-SVLSFW 247 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~v~iw 247 (271)
++.++..|..- + -.+...+++|++++.|++|++||..++++++.+.+ |.+.|..+++. +...++++. +.+++|
T Consensus 405 c~~tl~~h~~~--v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 405 CIHTLQGHTSL--V--SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLW 479 (537)
T ss_pred hhhhhcCCccc--c--cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEE
Confidence 99999888865 4 33445678999999999999999999999999988 67888888876 344444444 999999
Q ss_pred cCCCCCCCcC
Q 024185 248 IPNPSSNSTD 257 (271)
Q Consensus 248 ~~~~~~~~~~ 257 (271)
|++++++...
T Consensus 480 dl~~~~~~~~ 489 (537)
T KOG0274|consen 480 DLRSGTLIRT 489 (537)
T ss_pred ecccCchhhh
Confidence 9999887663
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.4e-27 Score=192.02 Aligned_cols=205 Identities=11% Similarity=0.109 Sum_probs=162.3
Q ss_pred EEcc-cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--------------------------------c---
Q 024185 39 EFFA-TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--------------------------------A--- 82 (271)
Q Consensus 39 ~~~~-~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--------------------------------~--- 82 (271)
+.+. .|++.|.++.||+||++ ||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKy-----LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKY-----LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eccccccCCcEEEEEeCCCCce-----eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 3455 89999999999999999 99999999999997644 0
Q ss_pred -------------------------ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC
Q 024185 83 -------------------------SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD 135 (271)
Q Consensus 83 -------------------------~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 135 (271)
++++.+.+|. +..++|+. .++|++++.|.+|++|++...++ +..+ .|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~C--L~~F---~H 408 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKEC--LKVF---SH 408 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcce--eeEE---ec
Confidence 0111223342 33367764 45799999999999999998775 3333 49
Q ss_pred ccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 136 TAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 136 ~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
.+.|+|++|+| |.++|++|+-|+.++||++...+.+.-...+.- |++++|.|||++.+.|+.+|..++|+....+.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l---ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL---ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh---heeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 99999999999 889999999999999999998887776665543 99999999999999999999999999988776
Q ss_pred EEEec---------CCcceeEEEEEecCCc--EEEEeC-CeEEEEcCCCCCCCcCC
Q 024185 215 VACWN---------GNIGVVACLKWAPRRA--MFVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 215 ~~~~~---------~~~~~v~~~~~s~~~~--~l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
...+. .|. .|+++.|.|... +|++.. ..|+|+|.+...+....
T Consensus 486 ~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred EEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence 65431 133 799999998543 666665 88999999766554443
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1e-26 Score=177.71 Aligned_cols=220 Identities=20% Similarity=0.236 Sum_probs=179.3
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-c
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-L 90 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~ 90 (271)
..++....++....|+.-.. .....+.+|++.+.++.|...... +++|+.|.+|++||+.+..+.+++- +
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~----r~~~TLsGHtdkVt~ak~~~~~~~-----vVsgs~DRtiK~WDl~k~~C~kt~l~~ 302 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSL----RLRHTLSGHTDKVTAAKFKLSHSR-----VVSGSADRTIKLWDLQKAYCSKTVLPG 302 (459)
T ss_pred ceEEeecCCCceeeeeccch----hhhhhhcccccceeeehhhccccc-----eeeccccchhhhhhhhhhheecccccc
Confidence 34444455666777766555 455668899999999999888776 7799999999999999988776653 3
Q ss_pred CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 91 RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.....+..+ ...+++|..|+.|++||.+.... ....+.+ +.|+++..++++..+++++.|.++.+.|+++.+.
T Consensus 303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK----TRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred ccccceEec--ceeeeecccccceEEEeccCCce----eeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence 334444444 56688999999999999998876 5555554 5899999999999999999999999999999998
Q ss_pred EEEeecCCCC--CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc--eeEEEEEecCCcEEEEeC--CeE
Q 024185 171 RCGFSLEPSP--NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 171 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v 244 (271)
...+...... ...+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+|.|..|++++ +.+
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 8877654332 3477899999999999999999999999999999888865444 599999999999999998 668
Q ss_pred EEE
Q 024185 245 SFW 247 (271)
Q Consensus 245 ~iw 247 (271)
.+|
T Consensus 456 ~lW 458 (459)
T KOG0288|consen 456 TLW 458 (459)
T ss_pred Eec
Confidence 888
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=161.11 Aligned_cols=217 Identities=13% Similarity=0.127 Sum_probs=181.0
Q ss_pred eecceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 8 LPITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 8 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
-|.+..+++. ..+..+..++...+ ..........+.+. +.|+|+|.+ ++.++.|..|...|.++.+...
T Consensus 73 ~~~~~d~~atas~dk~ir~wd~r~~----k~~~~i~~~~eni~-i~wsp~g~~-----~~~~~kdD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 73 DPKHPDLFATASGDKTIRIWDIRSG----KCTARIETKGENIN-ITWSPDGEY-----IAVGNKDDRITFIDARTYKIVN 142 (313)
T ss_pred CCCCCcceEEecCCceEEEEEeccC----cEEEEeeccCcceE-EEEcCCCCE-----EEEecCcccEEEEEecccceee
Confidence 3444445554 55778888888777 22233444445555 889999999 8889999999999999888776
Q ss_pred EEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 87 ILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
..+.. .+.-++|+.++.+++.....|.|.|.....-+. ...+++|.....|+.|+|+|++||+|+.|..+.+||+
T Consensus 143 ~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp----v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 143 EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP----VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred hhcccceeeeeeecCCCCEEEEecCCceEEEEecccccc----ccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence 66554 345588888888887777789999999886554 6778899999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
..--+++.+....-+ |..+.|+.||++||++++|..|-|=++++|..+..++ +.++-..++|+|...+||-++
T Consensus 219 ~ELiC~R~isRldwp--VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 219 DELICERCISRLDWP--VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred hHhhhheeeccccCc--eEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEe
Confidence 998888988887776 9999999999999999999999999999999999997 678889999999999998774
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6e-26 Score=182.35 Aligned_cols=228 Identities=18% Similarity=0.258 Sum_probs=188.0
Q ss_pred EeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-CC-
Q 024185 15 LFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-RG- 92 (271)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~- 92 (271)
+....+-.+++++...+ ........+...+.++.|+++|.+ |+.|..+|.|.|||..+.+.+..+.. |.
T Consensus 191 laValg~~vylW~~~s~----~v~~l~~~~~~~vtSv~ws~~G~~-----LavG~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 191 LAVALGQSVYLWSASSG----SVTELCSFGEELVTSVKWSPDGSH-----LAVGTSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred EEEEecceEEEEecCCC----ceEEeEecCCCceEEEEECCCCCE-----EEEeecCCeEEEEehhhccccccccCCcCc
Confidence 33333557777777777 223333444889999999999999 99999999999999999988888887 65
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
+.+++|. +..+.+|+.++.|..+|++..+. ... .+.+|...|+.++|++|++++|+|+.|+.+.|||....+++
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--VVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecchh--hhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 4457776 77899999999999999998775 112 37889999999999999999999999999999999888888
Q ss_pred EEeecCCCCCceeeEEECCC-CCEEEEecC--CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC----CeE
Q 024185 172 CGFSLEPSPNTNTEATFTPD-GQYVVSGSG--DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVL 244 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~v 244 (271)
..+..|... |..++|+|- ...||+|+. |+.|++||..+++.+..+.. .+.|.++.|++..+-|+++. +.|
T Consensus 337 ~~~~~H~aA--VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 337 FTFTEHTAA--VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred EEEecccee--eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 888888866 999999996 557887754 89999999999999998874 45699999999987666664 679
Q ss_pred EEEcCCCCCCCcCCC
Q 024185 245 SFWIPNPSSNSTDES 259 (271)
Q Consensus 245 ~iw~~~~~~~~~~~~ 259 (271)
.||+..+.+......
T Consensus 414 ~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 414 TLWKYPSMKLVAELL 428 (484)
T ss_pred EEEeccccceeeeec
Confidence 999998876665554
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.4e-25 Score=169.91 Aligned_cols=223 Identities=14% Similarity=0.142 Sum_probs=177.4
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC------------
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML------------ 81 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~------------ 81 (271)
++.+..+..+.++....+......+..-++|+..|.++...+++.. +++|+.|..+++|+.++
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr-----~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTR-----FCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCe-----EEeecccceeeecccCCCccccccccchh
Confidence 4444556666666665553333333334599999999999999998 89999999999999321
Q ss_pred -------------cceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 82 -------------ASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 82 -------------~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
+.++.++.+|. +..+.|++ ...+++++.|.+|+.||+++++. ...+. ....+.|+.++|
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~----~~~~~-~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL----KSTLT-TNKSLNCISYSP 310 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc----eeeee-cCcceeEeeccc
Confidence 12445667775 45588887 66799999999999999999886 33333 346899999999
Q ss_pred CCcEEEEEecCCeEEEEECCCCe---EEEEeecCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCCce-eEEEecCC
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGE---KRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRN-EVACWNGN 221 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~ 221 (271)
..++|++|+.|..+++||.+++. ..+++.+|.+ .|.++.|+|... .|++|+.|+++++||+++.+ +++.+.+|
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN--WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecchh--hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 99999999999999999998753 3455777775 599999999765 56789999999999999887 99999999
Q ss_pred cceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
...|.++.|. ++.++++|+ ++++++...
T Consensus 389 ~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 389 NDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999998 566899998 789998653
No 83
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.5e-25 Score=183.02 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=197.1
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
++.....+++..+++.+..|+..+. ..++.+.- +.+.+..|-|.+++ +++|...|.+.+||+.+...+.
T Consensus 380 ~vS~d~~~~~Sga~~SikiWn~~t~----kciRTi~~--~y~l~~~Fvpgd~~-----Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 380 CVSSDSILLASGAGESIKIWNRDTL----KCIRTITC--GYILASKFVPGDRY-----IVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred EeecCceeeeecCCCcEEEEEccCc----ceeEEecc--ccEEEEEecCCCce-----EEEeccCCceEEEEeehhhhhh
Confidence 4444456666677888888887665 33344433 37788899999998 8899999999999999999888
Q ss_pred EEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCC-----CCC----CcceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 87 ILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRS-----YDK----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
+++.|. ++.++.+||++.+++|+.|.+|++||..- +.. ...+...++ -+..|.|+++||||++|+++-
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEe
Confidence 888775 67799999999999999999999999642 111 000111111 246799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 235 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 235 (271)
-|.++++|-+.+-+..-.+.+|.-| |.|+..+||++.+++|+.|..|++|-+.-|.+-+.+-+|...|.++.|-|+..
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkLP--V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKLP--VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred ccCeEEEEEecceeeeeeecccccc--eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 9999999999999988888899887 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC--CeEEEEcCCCCCCCcC
Q 024185 236 MFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 236 ~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
++.+++ +.++-||-+..+....
T Consensus 606 ~FFt~gKD~kvKqWDg~kFe~iq~ 629 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGEKFEEIQK 629 (888)
T ss_pred eEEEecCcceEEeechhhhhhhee
Confidence 999998 8899999887765443
No 84
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.8e-27 Score=192.15 Aligned_cols=192 Identities=18% Similarity=0.211 Sum_probs=177.4
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcCCCCEEEEEecCCeEEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKL 116 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i 116 (271)
..|.+|+..|.++.|++.... ++.|+.+|+|++||++.++.++++.+|.. ..+.|+|-+.+.+.|+.|+.+++
T Consensus 64 ~S~~~hespIeSl~f~~~E~L-----laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERL-----LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred heeeccCCcceeeecCcchhh-----hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence 348899999999999999998 88999999999999999999999999864 44899999999999999999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
||.+...+ ...+.+|...+.++.|+|+|++++.++.|..+++||+..|+....|+.|... +..+.|+|..-+++
T Consensus 139 wD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~--v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 139 WDIRKKGC----SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK--VQSLEFHPLEVLLA 212 (825)
T ss_pred hhhhccCc----eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc--ccccccCchhhhhc
Confidence 99997666 7778889999999999999999999999999999999999999999988876 77899999999999
Q ss_pred EecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 197 SGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+|+.|+++++||+++.+.+.........|.+.+|+|+++.+++|.
T Consensus 213 ~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred cCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 999999999999999999888877788999999999999999886
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=173.87 Aligned_cols=222 Identities=16% Similarity=0.124 Sum_probs=180.1
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.+|+.+ -..|.+..++.... ..++.+..|+.++....|+|.+..+ +++|+.|+.+++||+.+...+..+.+
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r----~iLR~~~ah~apv~~~~f~~~d~t~----l~s~sDd~v~k~~d~s~a~v~~~l~~ 151 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSR----VILRQLYAHQAPVHVTKFSPQDNTM----LVSGSDDKVVKYWDLSTAYVQAELSG 151 (487)
T ss_pred CeEEEccCCcCcEEEeccccH----HHHHHHhhccCceeEEEecccCCeE----EEecCCCceEEEEEcCCcEEEEEecC
Confidence 455544 45688888884332 4556689999999999999998876 66999999999999999887667888
Q ss_pred CC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 91 RG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 91 ~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
|. +.|.+|+|-. ..+++|+.||.|++||++.... ....+ .|..+|..+.+-|.|..+++++.+ .+++||+-+
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~ 226 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTT 226 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecC
Confidence 86 6679999865 4889999999999999987642 13333 588999999999999999988754 799999986
Q ss_pred Ce-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 168 GE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 168 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
|. .+..+..|... |+|+++..++..|++++-|+.+++||+.+-+.++.+. ..++|.+++.+|++..++.|- |.+
T Consensus 227 G~qll~~~~~H~Kt--VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKT--VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred Cceehhhhhcccce--EEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEeccccee
Confidence 54 44444446655 9999999999999999999999999999999999886 578899999999999988885 555
Q ss_pred EEEcC
Q 024185 245 SFWIP 249 (271)
Q Consensus 245 ~iw~~ 249 (271)
.+=+.
T Consensus 304 ~~rr~ 308 (487)
T KOG0310|consen 304 SIRRR 308 (487)
T ss_pred eeehh
Confidence 54433
No 86
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=174.26 Aligned_cols=208 Identities=13% Similarity=0.172 Sum_probs=176.3
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCC
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 121 (271)
-.+.+.++..+|+|.+ ++.|+..|.+++|.+.+|..+..+..| .++|+.|+.||.+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~-----l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYF-----LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceE-----EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 3567999999999998 777779999999999999999999877 688999999999999999999999998632
Q ss_pred -----CCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 122 -----YDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 122 -----~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
....+.....+..|.-+|+++...+. ..++++++.|.++++||+..+..+.++..... +.+++.+|-++.
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s---i~av~lDpae~~ 231 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS---IKAVALDPAERV 231 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc---ceeEEEcccccE
Confidence 11122345567789999999998875 45799999999999999999999888775543 899999999999
Q ss_pred EEEecCCCcEEEEEcCC----------------ceeEEEecCCcc--eeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 195 VVSGSGDGTLHAWNINT----------------RNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
++.|+.+|.|.+.++.. +..+..+.+|.+ .|+|++.+-||.+|++|+ |.+.|||+.+.++
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 99999999999887643 223456678887 999999999999999998 9999999999877
Q ss_pred CcCCC
Q 024185 255 STDES 259 (271)
Q Consensus 255 ~~~~~ 259 (271)
++...
T Consensus 312 iRtl~ 316 (476)
T KOG0646|consen 312 IRTLQ 316 (476)
T ss_pred HHHHh
Confidence 66554
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.3e-25 Score=161.92 Aligned_cols=210 Identities=12% Similarity=0.154 Sum_probs=175.8
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEec--CCeE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAME--AGAI 114 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~--d~~i 114 (271)
+.|+.-.+.+.++.|+++|.. +++++.|.++++||..+++.++++..+ ++..++|....+.+..++. |.+|
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~-----litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLL-----LITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccCCCceeEEEecCCCCE-----EEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 346667789999999999999 888899999999999999999999877 6677888777766666655 7899
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
+..++.+.+. ...+.||...|.+++.+|-+..+++++.|++|++||++..++...+.....+ + ++|+|.|-+
T Consensus 83 ryLsl~dNky----lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i--~AfDp~GLi 154 (311)
T KOG1446|consen 83 RYLSLHDNKY----LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--I--AAFDPEGLI 154 (311)
T ss_pred EEEEeecCce----EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--c--eeECCCCcE
Confidence 9999999887 7778999999999999998899999999999999999988887777655544 5 899999999
Q ss_pred EEEecCCCcEEEEEcCCc--eeEEEec---CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTR--NEVACWN---GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTD 261 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~~ 261 (271)
+|++...+.|++||++.- .+..++. +.....+.+.|||||++++.+. +.+++.|.-+|..+...+..
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 999998889999999863 3344442 3356789999999999877665 77999999888877666543
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=185.57 Aligned_cols=210 Identities=15% Similarity=0.125 Sum_probs=172.9
Q ss_pred eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcC-CCCEEEEEec
Q 024185 33 YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQ-QGLVFAVAME 110 (271)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~ 110 (271)
..+..+..|.+|.+.|-.+.||.++- |++++.|.+|++|++...++++.|.... ++|++|+| |.++|++|+-
T Consensus 357 f~ekP~~ef~GHt~DILDlSWSKn~f------LLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 357 FSEKPFCEFKGHTADILDLSWSKNNF------LLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred ccccchhhhhccchhheecccccCCe------eEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc
Confidence 33445667899999999999998876 6799999999999999999999998775 89999999 6789999999
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC------CCcee
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS------PNTNT 184 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------~~~v~ 184 (271)
||.++||++...+. .... .-..-|++++|.|||+..++|+.+|.+++|+....+....+..+.. ...|+
T Consensus 431 D~KvRiWsI~d~~V----v~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rIT 505 (712)
T KOG0283|consen 431 DGKVRLWSISDKKV----VDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRIT 505 (712)
T ss_pred ccceEEeecCcCee----Eeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceee
Confidence 99999999998774 3222 2347899999999999999999999999999988776655433221 13599
Q ss_pred eEEECCCCC-EEEEecCCCcEEEEEcCCceeEEEecCCcc--eeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 185 EATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVACWNGNIG--VVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 185 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
.+.|.|... .+++.+.|..|+|+|.++.+++..++++.. .=....|+.||++|++++ ..|++|++....
T Consensus 506 G~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 506 GLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 999987543 577788899999999999899888876543 234678999999999999 669999985544
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=172.22 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=186.4
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEE-------------EEc-ccccceEEeeEEecCCchhhhhhhhhhccCceEE
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMII-------------EFF-ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYG 75 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~ 75 (271)
.....+-+..++.+..++...+....-.+ +.- +.|.+.+.+++.|+|+++ |++|+.|..|.
T Consensus 153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky-----latgg~d~~v~ 227 (479)
T KOG0299|consen 153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY-----LATGGRDRHVQ 227 (479)
T ss_pred cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE-----EEecCCCceEE
Confidence 33444444668899999988876431111 111 367788999999999999 99999999999
Q ss_pred EEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 76 IFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 76 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
||+.++.+.++.+.+|. +.+++|-.....+++++.|+.+++|+++.... ..++-+|++.|..+....-++.+-+
T Consensus 228 Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~----vetlyGHqd~v~~IdaL~reR~vtV 303 (479)
T KOG0299|consen 228 IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY----VETLYGHQDGVLGIDALSRERCVTV 303 (479)
T ss_pred EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH----HHHHhCCccceeeechhcccceEEe
Confidence 99999999999999986 55588988888899999999999999998775 6667799999999999888888888
Q ss_pred EecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CC-----------
Q 024185 154 TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GN----------- 221 (271)
Q Consensus 154 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~----------- 221 (271)
|+.|.++++|++..... ..+.++... +-|++|-.+ ..+++|+.+|.|.+|++...+++.+.. +|
T Consensus 304 GgrDrT~rlwKi~eesq-lifrg~~~s--idcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~ 379 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEESQ-LIFRGGEGS--IDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNG 379 (479)
T ss_pred ccccceeEEEeccccce-eeeeCCCCC--eeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccccc
Confidence 88999999999954433 345555544 888888644 568999999999999999988887652 12
Q ss_pred cceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
+.+|++++..|...++++|+ |.|++|-++.+
T Consensus 380 ~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 380 NFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 24899999999999999998 88999999887
No 90
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.9e-27 Score=193.11 Aligned_cols=208 Identities=16% Similarity=0.252 Sum_probs=186.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+..|...+.++..-..++. +++|+.|..+.+|.+.....+..+.+|. +.++.|+++..+|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~-----~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRS-----LVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeecccee-----eccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 5567778888877666666 8899999999999998777777788885 56799999999999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
++..+. ...+.+|...+.++.|+|-+.+.+.|+.|..+++||.+...+.+.+.+|... +..+.|+|+|++++.|
T Consensus 99 leeAk~----vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v--v~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 99 LEEAKI----VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV--VDVLRLSPDGRWVASG 172 (825)
T ss_pred hhhhhh----hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce--eEEEeecCCCceeecc
Confidence 998876 5678899999999999999999999999999999999988888999886654 8889999999999999
Q ss_pred cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 199 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
++|..++|||...|+.+..|..|.+.+..+.|+|..-++++|+ +++++||+++.+.+....
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 9999999999999999999999999999999999999999998 889999999877665554
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.7e-25 Score=189.14 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=170.4
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhc--cCceEEEEEecC------------cceeEEEecC--CcceEEEcCCCCE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLT--TALEYGIFVLML------------ASFQGILRLR--GRPTVAFDQQGLV 104 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~--~~~~~~~~~~~~~ 104 (271)
..+++..+..+..+|++.. +++|+ .||.+++|+.+. .+.+.+...| .+.|+.|+|||++
T Consensus 9 v~H~~~~IfSIdv~pdg~~-----~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVK-----FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred cccCCeeEEEEEecCCcee-----EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe
Confidence 4566777899999999999 99999 999999998752 1223334444 4788999999999
Q ss_pred EEEEecCCeEEEEeCCCC----------CC----CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 105 FAVAMEAGAIKLFDSRSY----------DK----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 105 l~~~~~d~~i~i~d~~~~----------~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
||+|++|+.|.+|+.... .. .......+.+|...|..++|+|++.+|++++.|++|.+||.++.+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee
Confidence 999999999999998730 00 1123556789999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc------ceeEEEEEecCCcEEEEeC---
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI------GVVACLKWAPRRAMFVAAS--- 241 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~--- 241 (271)
+.++.+|... |..+.|+|-|+|+++-+.|++|++|.+.+....+.+.++- .....+.|||||.+|++..
T Consensus 164 ~~vl~~H~s~--VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 164 LKVLRGHQSL--VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeeeeccccc--ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 9999999987 9999999999999999999999999988877777665442 3578999999999999984
Q ss_pred ---CeEEEEcCCCCC
Q 024185 242 ---SVLSFWIPNPSS 253 (271)
Q Consensus 242 ---~~v~iw~~~~~~ 253 (271)
.++.|.+-.+.+
T Consensus 242 ~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWK 256 (942)
T ss_pred CCcceeEEEecCCce
Confidence 347777665554
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-23 Score=149.73 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=166.2
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-----eEEEecCC--cceEEEcCC----CCEE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-----QGILRLRG--RPTVAFDQQ----GLVF 105 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~--~~~~~~~~~----~~~l 105 (271)
+.+.-++|++.+.|.+|||+|+. +++|+.|.+|++.-.+...+ -..+..|. +..++|-.+ +..|
T Consensus 81 ~~kr~khhkgsiyc~~ws~~gel-----iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGEL-----IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred EeeeccccCccEEEEEecCccCe-----EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence 45556789999999999999999 99999999999975543221 12345554 444787443 3566
Q ss_pred EEEe-cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC----
Q 024185 106 AVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---- 180 (271)
Q Consensus 106 ~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---- 180 (271)
++++ .|..|++-|...++. ...+.+|.+-|.++ ++-++-.+++|+.|.+|++||++-..++.++......
T Consensus 156 ~s~gagdc~iy~tdc~~g~~----~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQG----FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred EecCCCcceEEEeecCCCCc----ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 6654 456777778877775 55577999999887 4556788999999999999999988888876533221
Q ss_pred -CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 181 -NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 181 -~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
..|.+++..|.|++|++|..|.+..+||++.++.++.+..|...|.++.|+|.-.++++++ ..|++=|+...
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 5688999999999999999999999999999999999999999999999999999999999 77999998764
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=5.9e-25 Score=185.94 Aligned_cols=211 Identities=12% Similarity=0.111 Sum_probs=177.5
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC------------------cceeEEEecCC--cce
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML------------------ASFQGILRLRG--RPT 95 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~--~~~ 95 (271)
..+.....|.+.++|+.|+|||++ ||+|+.|+.|.+|+... .+.+..+.+|. +..
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~-----lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSY-----LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD 134 (942)
T ss_pred hhheeeccccCceeEEEECCCCCe-----EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce
Confidence 344557789999999999999999 99999999999998862 12566777785 455
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
++|+|++.+|++++.|++|.+|+..+.+. ...+.+|.+.|..+.|.|-|++||+-+.|++|++|++.+....+.+.
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred eccCCCccEEEEecccceEEEEcccccee----eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence 99999999999999999999999999876 77788999999999999999999999999999999988777777665
Q ss_pred cCCC----CCceeeEEECCCCCEEEEecC----CCcEEEEEcCCceeEEEecCCcceeEEEEEecC-----Cc-------
Q 024185 176 LEPS----PNTNTEATFTPDGQYVVSGSG----DGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-----RA------- 235 (271)
Q Consensus 176 ~~~~----~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------- 235 (271)
.+.. ......+.|||||++|++... -..+.|.+-.+.+.-..+-||.+++.++.|+|. ..
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 5433 245788999999999998744 247889998888888999999999999999982 11
Q ss_pred -----EEEEeC--CeEEEEcCCCCCCC
Q 024185 236 -----MFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 236 -----~l~~~~--~~v~iw~~~~~~~~ 255 (271)
.+|+|| ++|.||.....+++
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCch
Confidence 456666 88999998776654
No 94
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.8e-25 Score=172.76 Aligned_cols=204 Identities=13% Similarity=0.172 Sum_probs=163.7
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----------eeEEEecCC--cceEEEcCCC-CEEEEE
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----------FQGILRLRG--RPTVAFDQQG-LVFAVA 108 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~--~~~~~~~~~~-~~l~~~ 108 (271)
-.|.+.|+.+.+-|+...+ +++.+..+.+.|||..+.. +-..+.+|. ...++|++.. -.|+++
T Consensus 121 i~h~gEVnRaRymPQnp~i----VAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNI----VATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred ccCCccchhhhhCCCCCcE----EEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3577888888888988876 5588999999999986432 122566664 4569999865 479999
Q ss_pred ecCCeEEEEeCCCCCCC---cceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECC--CCeEEEEeecCCCCCc
Q 024185 109 MEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAY--GGEKRCGFSLEPSPNT 182 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~ 182 (271)
+.|+.|.+||+...... ......+.+|...|..++|+| +..+|++++.|+.+.|||+| +.++.+....|...
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~-- 274 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE-- 274 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc--
Confidence 99999999999765431 234556789999999999999 56678899999999999999 45555666667665
Q ss_pred eeeEEECCC-CCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCC
Q 024185 183 NTEATFTPD-GQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 183 v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~ 251 (271)
+.|++|+|- +..||+|+.|++|.+||+++ .++++.+.+|...|.++.|||+.. .||+++ +.+.+||+..
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 999999996 55778899999999999997 456889999999999999999765 666665 7899999966
No 95
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.7e-26 Score=186.30 Aligned_cols=220 Identities=14% Similarity=0.195 Sum_probs=174.2
Q ss_pred eEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 13 ALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 13 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.++++ ..+|.+..|+.-....+ ..+..|..|+..++++.|++....+ |++|+.||+|++||++..+...++.+.
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rn-k~l~~f~EH~Rs~~~ldfh~tep~i----liSGSQDg~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRN-KLLTVFNEHERSANKLDFHSTEPNI----LISGSQDGTVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred hhheeecCCCcEEEEecCccccc-hhhhHhhhhccceeeeeeccCCccE----EEecCCCceEEEEeeeccccccccccc
Confidence 34444 45788888887664223 3445689999999999999998876 779999999999999998888888765
Q ss_pred --CcceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 92 --GRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 92 --~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
.+..++|+|. +.+|+++.++|.+++||++.... ....+.+|.++|.|+.|+|++.+||+|+.|+.|+|||..+.
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCchh---HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 3566999994 67899999999999999998763 35567799999999999999999999999999999999876
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCE-EEEecC--CCcEEEEEcCCcee-EEEecCCcceeEEEEEec-CCcEEEEeC
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQY-VVSGSG--DGTLHAWNINTRNE-VACWNGNIGVVACLKWAP-RRAMFVAAS 241 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 241 (271)
+.......+.. .++.++.|-|...+ |++++. |..|+|||++..-. ..++..|...++.++|.. |...+.+++
T Consensus 253 ~~~~~~tInTi-apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 253 RAKPKHTINTI-APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCS 329 (839)
T ss_pred CccceeEEeec-ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeec
Confidence 54443333332 35889999998664 555544 77899999987554 457788999999999965 445677776
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=183.73 Aligned_cols=193 Identities=15% Similarity=0.259 Sum_probs=154.2
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecC---cceeEEEecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCC
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLML---ASFQGILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~ 123 (271)
.+.|..-...+ +++++..|.|.+||+.. .+.+..|..|+ +.++.|++-. .+|++|++||.|++||++..+
T Consensus 92 DVkW~~~~~Nl----IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 92 DVKWGQLYSNL----IATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hcccccchhhh----heeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 35565333332 88999999999999976 45555676675 6669998855 688999999999999999877
Q ss_pred CCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEecCC
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
. ...+.+....|++++|+| .+..++++...|.+++||+|.. ++...+..|.++ |.++.|+|++.+||+|+.|
T Consensus 168 S----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp--V~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 168 S----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP--VLCLNWHPNREWLATGGRD 241 (839)
T ss_pred c----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc--eEEEeecCCCceeeecCCC
Confidence 5 445556778899999999 6788999999999999999865 445667788876 9999999999999999999
Q ss_pred CcEEEEEcCCcee--EEEecCCcceeEEEEEecCCc-EEEEeC----CeEEEEcCCCCC
Q 024185 202 GTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRA-MFVAAS----SVLSFWIPNPSS 253 (271)
Q Consensus 202 g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~----~~v~iw~~~~~~ 253 (271)
+.|+|||+.+++. +.++. ...+|.++.|-|+.. +|++++ -.|+|||++..-
T Consensus 242 K~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred ccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 9999999986543 33443 356899999999765 677776 449999997643
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.4e-24 Score=160.10 Aligned_cols=210 Identities=13% Similarity=0.086 Sum_probs=162.6
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEE-EecC--CcceEEEcCCCCEEEEEecCCeEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGI-LRLR--GRPTVAFDQQGLVFAVAMEAGAIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i 116 (271)
-...++.|.+++|||....+ ++.++.||+||+|+++. |..+-. ...+ .+.+++|+.||..+++|+.|+.+++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~----~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNL----LAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred CCCcccchheeEeccccCce----EEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 45677899999999966653 55899999999999986 333221 2233 3556999999999999999999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCc--EEEEEecCCeEEEEECCCCeEEEEeecCCC---------------
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK--SMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--------------- 179 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------------- 179 (271)
||+.+++ ...+..|.++|.++.|-+... .|++||.|++|+.||.|...++.++.....
T Consensus 99 wDL~S~Q-----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 99 WDLASGQ-----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVAT 173 (347)
T ss_pred EEccCCC-----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEe
Confidence 9999987 566778999999999988655 899999999999999998766555442211
Q ss_pred ------------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCc--eeEEEecCCc---------ce
Q 024185 180 ------------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR--NEVACWNGNI---------GV 224 (271)
Q Consensus 180 ------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~ 224 (271)
.-.+++++..+|....+.|+-+|.+.|..+..+ +.-..++.|. ..
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 124677777778777789999999999888776 3344555554 36
Q ss_pred eEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 225 VACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|++++|+|....|++++ |++.+||-+....+...+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~ 290 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE 290 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence 88999999877788776 999999987766555543
No 98
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=4.5e-25 Score=167.10 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=158.8
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC----------------cceeEEEecCC--cceEEEcCCC-
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML----------------ASFQGILRLRG--RPTVAFDQQG- 102 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~--~~~~~~~~~~- 102 (271)
-+|.+.++.+..++-++-.+ .++-+..|.|+|||+.. .+++.++.+|. .+.++|||-.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~---~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVL---CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccccceeeecccCCcce---eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 45666777777777653211 46778999999999842 24566777774 5669999943
Q ss_pred CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEEE--eecCCC
Q 024185 103 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCG--FSLEPS 179 (271)
Q Consensus 103 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~ 179 (271)
..|++|..-+.|++|...++.. .+....+.+|...|-.++|||. ...|++++.||+|+|||+|.+..... .+.|..
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred cccccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCC
Confidence 3588888888999999988764 2223346679999999999995 55788999999999999998843222 245554
Q ss_pred CCceeeEEECCCCCEEEEecCCCcEEEEEcCC---ceeEEEecCCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCCCC
Q 024185 180 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~ 253 (271)
.|+-+.|+.+-.+|++|+.||+++|||+++ ++++..++-|..+|+++.|+|... .|++++ ..|.+||+...+
T Consensus 304 --DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 304 --DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred --ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 488899999988999999999999999985 677889999999999999999654 344433 779999997655
Q ss_pred C
Q 024185 254 N 254 (271)
Q Consensus 254 ~ 254 (271)
-
T Consensus 382 D 382 (440)
T KOG0302|consen 382 D 382 (440)
T ss_pred C
Confidence 4
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=6.2e-26 Score=173.46 Aligned_cols=234 Identities=15% Similarity=0.116 Sum_probs=191.2
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
+..+.+.-+..+..+..|+...+. ......+.+..+.+..+.+.+++.. +++.+.|+.+++|+....+...++
T Consensus 185 ~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~-----~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 185 RNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKH-----VIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred cCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCce-----EEeecCCCceeeeeccchhhhhhh
Confidence 333455556667777777776663 3355668888899999999999998 888999999999999999999999
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.+|. +.++.|......+++|+.|.+|+.||+....+ ...+ -....+.++..+ ...+++|..|++|++||.+
T Consensus 258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C----~kt~-l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC----SKTV-LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred cccccceeeehhhccccceeeccccchhhhhhhhhhhe----eccc-cccccccceEec--ceeeeecccccceEEEecc
Confidence 9985 56678877777799999999999999998654 2221 112455666665 4568899999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC----cceeEEEEEecCCcEEEEeC-
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~- 241 (271)
+..+......+.. |+++..+++|..+.+++.|.++.+.|+++.+..+.+.+. ....+.+.|||++.|+++||
T Consensus 331 s~~~~~sv~~gg~---vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 331 SADKTRSVPLGGR---VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred CCceeeEeecCcc---eeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 9999888877663 999999999999999999999999999999988877542 23478899999999999998
Q ss_pred -CeEEEEcCCCCCCCcCCC
Q 024185 242 -SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~~ 259 (271)
|.|+||+..++++.....
T Consensus 408 dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred CCcEEEEEccCceEEEEec
Confidence 899999999999877655
No 100
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.8e-25 Score=168.41 Aligned_cols=211 Identities=11% Similarity=0.100 Sum_probs=172.0
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc---eeEEEecCC--cceEEEcCCCCEEEEEec
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS---FQGILRLRG--RPTVAFDQQGLVFAVAME 110 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 110 (271)
...+.+..|.+.|.-+.||++|++ ||+++.|.+..+|++.... ..+++.+|. +..+.||||.++|++++.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGky-----LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKY-----LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCee-----EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 345668899999999999999999 9999999999999886544 366777775 455999999999999999
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
+..+.+||+.++.. ...+. .++...+.+++|.|||..+++|+.|+++..||+. |......++-.. ..|.+++.++
T Consensus 290 ~e~~~lwDv~tgd~--~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~ 364 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDL--RHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITY 364 (519)
T ss_pred hHheeeccCCcchh--hhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcC
Confidence 99999999999986 22222 2356789999999999999999999999999986 444444443332 2488999999
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
||+++++.+.|..|++++..+...+..... ..+|++++.|.|++++++.= ..+++||++..++...
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 999999999999999999987766655543 45799999999999877663 8899999997665443
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=160.02 Aligned_cols=208 Identities=12% Similarity=0.167 Sum_probs=161.6
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce------eEEEecCCcceEEEcCCCCEEEEE-e
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF------QGILRLRGRPTVAFDQQGLVFAVA-M 109 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~-~ 109 (271)
.+..+++|.+.|++++|+.+|+. |++++.|+.|++|+++.... .+.++....+.+.|+||.+-++.. .
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~-----lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKK-----LATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCce-----eEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence 44567899999999999999999 99999999999999976321 122333345669999998755554 4
Q ss_pred cCCeEEEEeCCCCCC--CcceEEE------ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC
Q 024185 110 EAGAIKLFDSRSYDK--GPFDTFL------VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN 181 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~--~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 181 (271)
....+++|.+...+- .+..... ...|.-.+..+-...+++++++++.|..|.+|+++ |+.+..+......
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~- 230 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS- 230 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-
Confidence 556899998753321 1111111 12355677778888899999999999999999998 8888888766554
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcC---Cc-----eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNIN---TR-----NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
....+.||+|+++++++..-.+++|.+- .| ..+..+++|.+.|..++|+|+.+.+++.| |+.++||++-
T Consensus 231 -n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 -NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred -ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 5668999999999999998899999863 22 23557899999999999999999999999 9999999865
Q ss_pred C
Q 024185 252 S 252 (271)
Q Consensus 252 ~ 252 (271)
.
T Consensus 310 r 310 (420)
T KOG2096|consen 310 R 310 (420)
T ss_pred e
Confidence 3
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.8e-25 Score=162.87 Aligned_cols=212 Identities=15% Similarity=0.190 Sum_probs=181.4
Q ss_pred eeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecC
Q 024185 34 QCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEA 111 (271)
Q Consensus 34 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d 111 (271)
....++.|.+|+..|..++....... +.+++.|.+.+||.+++++++.++.+|. +++++|++.+.++++++.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi-----~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPI-----CGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcc-----eeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCC
Confidence 45667779999999999988877776 6799999999999999999999999984 7789999999999999999
Q ss_pred CeEEEEeC------CCC----------------C--------------CCcceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 112 GAIKLFDS------RSY----------------D--------------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 112 ~~i~i~d~------~~~----------------~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
++-+||.. ... + ........+.+|.+.|.+..|-..|+.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999972 110 0 01123455778999999999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCC
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
.|.+..+||+++++.+..+.+|... .+.++-+|..+++++.+.|.+.++||++.. ..+..|++|...|++..|.-|.
T Consensus 292 WDRTAnlwDVEtge~v~~LtGHd~E--LtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVNILTGHDSE--LTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred ccccceeeeeccCceeccccCcchh--ccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence 9999999999999999999999987 888899999999999999999999999853 3466789999999999999776
Q ss_pred cEEEEeC--CeEEEEcCCCCC
Q 024185 235 AMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 235 ~~l~~~~--~~v~iw~~~~~~ 253 (271)
+ +++++ .+|++||+++.+
T Consensus 370 ~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 370 R-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred c-eeecCCCceEEEeeecccc
Confidence 5 66666 789999998754
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.4e-24 Score=170.28 Aligned_cols=232 Identities=14% Similarity=0.105 Sum_probs=185.0
Q ss_pred eeEEeeecceeeEEEEeeccc-eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee--EEE
Q 024185 12 QALLFARQNIILILLESLCGI-YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ--GIL 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~ 88 (271)
..-+++...|-+.+|+..... ..+...-......+-+..+.+.|||+. |++|++-.++.|||+....+. ..+
T Consensus 431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrt-----LivGGeastlsiWDLAapTprikael 505 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRT-----LIVGGEASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCce-----EEeccccceeeeeeccCCCcchhhhc
Confidence 455666667788888765432 122211112234567888999999998 889999999999999765432 233
Q ss_pred ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.... ..+++.+||.+..+++..||.|.|||+.+... ...+++|.+.+.||..++||..|.+|+-|++|+.||++
T Consensus 506 tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~----VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred CCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee----eecccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence 3333 34499999999999999999999999998776 88899999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeE
Q 024185 167 GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVL 244 (271)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v 244 (271)
+++.+.... ....|.++..+|++.+++.|-+++.+.+.... +...+.+.-|.+.|.++.|++-|+++++.+ +-+
T Consensus 582 egrqlqqhd---F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 582 EGRQLQQHD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred hhhhhhhhh---hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhh
Confidence 998766543 33459999999999999999999999988864 444556667999999999999999999998 559
Q ss_pred EEEcCCCCCCCc
Q 024185 245 SFWIPNPSSNST 256 (271)
Q Consensus 245 ~iw~~~~~~~~~ 256 (271)
..|.+.-+.-+-
T Consensus 658 nawrtPyGasiF 669 (705)
T KOG0639|consen 658 NAWRTPYGASIF 669 (705)
T ss_pred hhccCcccccee
Confidence 999988776443
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2e-23 Score=173.94 Aligned_cols=229 Identities=11% Similarity=0.118 Sum_probs=184.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|..+.++.+.+++.+.+++......+|.. +..+...+.+++...+ . |++++.+++|..|.+..++.-..+
T Consensus 23 ~~gefi~tcgsdg~ir~~~~~sd~e~P~t---i~~~g~~v~~ia~~s~--~-----f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 23 PDGEFICTCGSDGDIRKWKTNSDEEEPET---IDISGELVSSIACYSN--H-----FLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred CCCCEEEEecCCCceEEeecCCcccCCch---hhccCceeEEEeeccc--c-----eEEeeccceEEEeeCCCCCcccee
Confidence 44455666677899999888776444443 2225556665555443 4 889999999999999888755444
Q ss_pred ec--CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 RL--RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 ~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
.. -...+++++.+|+++|.|+.|-.|++.++.+... ...+.+|.++|.++.|+|.+++||+.+.||.|++||+.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 32 2467799999999999999999999999988776 77889999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCC------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC--CcceeEEEEEecCCcEEE
Q 024185 167 GGEKRCGFSLEPS------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG--NIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 167 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~ 238 (271)
++.+..++..-.. ...+..++|+|+|..++..+.|+.|++|+..+++....+.. +...+..+.|+|+|+|||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 9877665543211 23467799999988888888899999999999998887743 344589999999999999
Q ss_pred EeC--CeEEEEcCCC
Q 024185 239 AAS--SVLSFWIPNP 251 (271)
Q Consensus 239 ~~~--~~v~iw~~~~ 251 (271)
+++ |.|.|||.++
T Consensus 249 As~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDT 263 (933)
T ss_pred eeccCCcEEEEeccc
Confidence 998 8899999996
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=9.3e-24 Score=172.09 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=182.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec------CCchhhhhhhhhhccCceEEEEEecCc
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA------CLQLMIALCLVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~~~~~~l~s~~~dg~i~iwd~~~~ 82 (271)
|.+++|.....+..++.|+...-.. ......+-.|...|..+..-| ....+.-.||++++.|++|++||++.+
T Consensus 334 et~~klscVYndhSlYvWDvrD~~k-vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 334 ETTDKLSCVYNDHSLYVWDVRDVNK-VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CCCceEEEEEcCceEEEEecccccc-ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc
Confidence 4567888888899999999766432 233344556777777665544 222333346899999999999999752
Q ss_pred ceeEE----------------------E----------------e-cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 83 SFQGI----------------------L----------------R-LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 83 ~~~~~----------------------~----------------~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
..-.. + . ..++.+++.+|+|++||+|..-|++++|++.+.+
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence 11000 0 0 0135679999999999999999999999987643
Q ss_pred C--------------------------------Ccce----------EEEecCCccce----------------------
Q 024185 124 K--------------------------------GPFD----------TFLVGGDTAEV---------------------- 139 (271)
Q Consensus 124 ~--------------------------------~~~~----------~~~~~~~~~~v---------------------- 139 (271)
. ..++ ..++.+|...|
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 2 0000 11122333333
Q ss_pred ---------------------------EEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC-CceeeEEECCC
Q 024185 140 ---------------------------CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPD 191 (271)
Q Consensus 140 ---------------------------~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~ 191 (271)
.+++..|..+++++++.|..|+|||+.+++..+.|++.... +....+...|.
T Consensus 573 imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 573 IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC
Confidence 44444555568899999999999999999999999876544 66778999999
Q ss_pred CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
|.|+++.+.|.++.++|.-+|+++.++.+|...|+.+.|.+|.++|++.+ |.|.||.+...
T Consensus 653 giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999999999999999999999999999999999999999887 78999998653
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.7e-25 Score=177.40 Aligned_cols=191 Identities=13% Similarity=0.171 Sum_probs=161.0
Q ss_pred hhhhccCceEEEEEecCcc------eeEEEecCCcce--EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc
Q 024185 65 LVLLTTALEYGIFVLMLAS------FQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 136 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 136 (271)
|.+|+.||.|++|+..... ....++.|..++ +....+++.|++++.|-+|++|+...... .....+..|.
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--~c~stir~H~ 117 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--FCMSTIRTHK 117 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--hhHhhhhccc
Confidence 7899999999999886432 255667776444 77888899999999999999999987642 2355677899
Q ss_pred cceEEEEE-cCCCcEEEEEecCCeEEEEECCCCe--EEEEee---------cCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 137 AEVCDIKF-SNDGKSMLLTTTNNNIYVLDAYGGE--KRCGFS---------LEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 137 ~~v~~~~~-s~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
+.|.|+++ .++..++++|+-|+.|.+||+.++. .+.++. ++. ..+.+++.++.|..+++|+..+.+
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k--~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK--DSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc--cceeeeecCCcceEEEecCcccce
Confidence 99999999 7788899999999999999999772 333322 222 458899999999999999999999
Q ss_pred EEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 205 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
++||.++++.+..+.+|...|..+..++||+.++++| |+|++||+...+++....
T Consensus 196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred EEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 9999999999999999999999999999999999998 999999999988876654
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.1e-22 Score=157.76 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=164.1
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceE
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTV 96 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~ 96 (271)
..++.+..++...+ .....+..+.. ...+.++|+++.+ +++++.++.+++||+++++.+..+..+ ....+
T Consensus 50 ~~~~~v~~~d~~~~----~~~~~~~~~~~-~~~~~~~~~g~~l----~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 120 (300)
T TIGR03866 50 SDSDTIQVIDLATG----EVIGTLPSGPD-PELFALHPNGKIL----YIANEDDNLVTVIDIETRKVLAEIPVGVEPEGM 120 (300)
T ss_pred CCCCeEEEEECCCC----cEEEeccCCCC-ccEEEECCCCCEE----EEEcCCCCeEEEEECCCCeEEeEeeCCCCcceE
Confidence 34667777776555 22233433333 4568899999863 345677899999999988877777643 45669
Q ss_pred EEcCCCCEEEEEecCC-eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeEEEEe
Q 024185 97 AFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~ 174 (271)
+|+|+++++++++.++ .+..||.++.+. ..... ......+++|+|+++++++++ .++.+++||+++++.+..+
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTKTYEI----VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI 195 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCCCCeE----EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence 9999999999988765 567789877653 22221 223457899999999886554 5899999999999877765
Q ss_pred ecCC-----CCCceeeEEECCCCCEEEEe-cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEE
Q 024185 175 SLEP-----SPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLS 245 (271)
Q Consensus 175 ~~~~-----~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~ 245 (271)
..+. .......++|+|++++++.+ +.++.+.+||+++++.+..+. +...+.+++|+|+|++|++++ ++|+
T Consensus 196 ~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 196 TFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred eecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence 4321 11123468899999986554 456789999999888876654 345689999999999988763 8899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+||+++++.....+
T Consensus 275 v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 275 VIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE
Confidence 99999988765544
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-23 Score=149.91 Aligned_cols=230 Identities=13% Similarity=0.149 Sum_probs=175.6
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEec--CCchhhhhhhhhhccCceEEEEEecCcceeEEE--
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSA--CLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-- 88 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 88 (271)
+|..+.+++.+.++....+.. ...+..+.+|.+++..++|.. .|.+ ||+++.||.|.||.-++++-.+..
T Consensus 25 rlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~i-----LAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTI-----LASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred eeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcE-----eeEeecCceEEEEecCCCchhhhhhh
Confidence 455557788888888766532 245667999999999998854 6677 899999999999999888543332
Q ss_pred ecC--CcceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC---C-----------cE
Q 024185 89 RLR--GRPTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---G-----------KS 150 (271)
Q Consensus 89 ~~~--~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~ 150 (271)
..| .+++++|.|. |-.|++++.||.|.+.+.+... ..........|.-.|++++|.|. | +.
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-CccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 334 4777999886 4688999999999999987652 11234445689999999999996 5 57
Q ss_pred EEEEecCCeEEEEECCCCe--EEEEeecCCCCCceeeEEECCCC----CEEEEecCCCcEEEEEcCCc-e--eEEEecCC
Q 024185 151 MLLTTTNNNIYVLDAYGGE--KRCGFSLEPSPNTNTEATFTPDG----QYVVSGSGDGTLHAWNINTR-N--EVACWNGN 221 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~ 221 (271)
|++|+.|..|++|+..+++ ..+++..|.. .|+.++|.|.- .+++++++||++.||-.+.. + ....+...
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f 255 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKD--WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF 255 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcch--hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence 9999999999999988763 3344666665 59999999973 47999999999999987621 1 12223345
Q ss_pred cceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
...+..++||+.|++|+.++ +.+.+|.-+.
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 66799999999999999887 7799997544
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.3e-23 Score=167.97 Aligned_cols=219 Identities=14% Similarity=0.101 Sum_probs=179.9
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG- 92 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 92 (271)
++++..+..+..+..... .....+.+|+..|.++....++. ++||+.|.++++|-. +++...+++|.
T Consensus 74 l~~g~~D~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~------~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGT------LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eEeecccceEEEEecCCC----CchhhhhccccceeeeecCCcCc------eEecccccceEEecc--hhhhcccCCcch
Confidence 666766777776665544 45566899999999888777776 569999999999976 45555688885
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
+++++.-|++ .+++|+.|.+|++|.-. +. ...+.+|.+-|+.+++-+++. +++++.||.|++|++ +|+.+
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~--~~----l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGG--TL----LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVL 212 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCC--ch----hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCcee
Confidence 5667777777 79999999999999973 33 556779999999999998765 889999999999998 78888
Q ss_pred EEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCC
Q 024185 172 CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN 250 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~ 250 (271)
..+.+|..- +.+++..+++..++++++|++++||+.. ++.+.+.-....|+++.+-++|.+++.|| |.|+||...
T Consensus 213 ~~~~ghtn~--vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 213 LEMHGHTNF--VYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeeeccceE--EEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 888888765 8899988888899999999999999976 77787775556899999999999888888 999999987
Q ss_pred CCCCCcC
Q 024185 251 PSSNSTD 257 (271)
Q Consensus 251 ~~~~~~~ 257 (271)
..+...+
T Consensus 289 k~R~As~ 295 (745)
T KOG0301|consen 289 KDRKASD 295 (745)
T ss_pred ccccCCH
Confidence 6655443
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.5e-22 Score=149.77 Aligned_cols=217 Identities=12% Similarity=0.136 Sum_probs=171.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
..++.+..++.+..++...+.. ..+..|...+.++..++-... +++|+.|++|++||.+.......+...
T Consensus 66 ~~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~~~-----vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEVGC-----VISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred ceEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccCCe-----EEEcccCccEEEEeccccccccccccC
Confidence 4666777788888888776632 226788999999999987666 889999999999999875555555443
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC---
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--- 168 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--- 168 (271)
+ .+.+.+-.++.|++|+.+..+.+||+++... ++ ...-..-+-.++|+++.|++.-++.++-||+|.+=.+...
T Consensus 136 k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~-~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 136 K-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE-PF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred c-eEEEEeccCCEEEEeecCceEEEEEcccccc-hh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 3 3445555788999999999999999998764 22 1122233467899999998888999999999887665544
Q ss_pred -eEEEEeecCCCC-------CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 169 -EKRCGFSLEPSP-------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 169 -~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
+....|+.|... .+|.+++|+|-...+++|+.||.|.+||+.+.+.+..+......|.+++|+.||..||.+
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 334456666442 358899999999999999999999999999999999998877889999999999999998
Q ss_pred C
Q 024185 241 S 241 (271)
Q Consensus 241 ~ 241 (271)
+
T Consensus 293 ~ 293 (323)
T KOG1036|consen 293 S 293 (323)
T ss_pred e
Confidence 6
No 111
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3e-22 Score=162.03 Aligned_cols=230 Identities=12% Similarity=0.087 Sum_probs=187.1
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR- 91 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 91 (271)
.|.++..+|.+..|+...+......+ ..+.+..+.+++|++.++ |.|.+.+|.|.-||+.++++...+...
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi--~g~~drsIE~L~W~e~~R------LFS~g~sg~i~EwDl~~lk~~~~~d~~g 110 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVI--HGPEDRSIESLAWAEGGR------LFSSGLSGSITEWDLHTLKQKYNIDSNG 110 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEE--ecCCCCceeeEEEccCCe------EEeecCCceEEEEecccCceeEEecCCC
Confidence 37788889999999988864443322 235667899999997777 569999999999999999988887654
Q ss_pred -CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 92 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.++.++.+|.+..+++|++||.++.++...++. .....+...++.+.+++|+|++..++.|+.||.|++||..++..
T Consensus 111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I--~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI--TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred cceeEEEeCCccceEEeecCCceEEEEecCCceE--EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 467799999999999999999888888877765 33444556678999999999999999999999999999999887
Q ss_pred EEEee-----cCC-CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--C
Q 024185 171 RCGFS-----LEP-SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--S 242 (271)
Q Consensus 171 ~~~~~-----~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~ 242 (271)
++... ... .+.-|.++.|-.++ .+++|...|+|.+||...+..++.+..|.+.|.+++..+++.++++++ +
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 76221 122 23446667776555 589999999999999999999999999999999999999999999888 7
Q ss_pred eEEEEcCCCCC
Q 024185 243 VLSFWIPNPSS 253 (271)
Q Consensus 243 ~v~iw~~~~~~ 253 (271)
.+.-|...+.+
T Consensus 268 ~ii~~~~~~~~ 278 (691)
T KOG2048|consen 268 KIIQYSLTTNK 278 (691)
T ss_pred ceEEEEecCCc
Confidence 77766665553
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.1e-24 Score=153.92 Aligned_cols=201 Identities=15% Similarity=0.217 Sum_probs=163.0
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc---ceeEEEecCCcce--EEEcC--CCCEEEEEecCCe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA---SFQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGA 113 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~d~~ 113 (271)
-..|++.|..+...--|+. |++++.|++|+|+..++. +.+.++.+|..++ ++|.. -|.+||+++.||.
T Consensus 7 dt~H~D~IHda~lDyygkr-----lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKR-----LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhhhhhhcce-----eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 4567777777777777777 999999999999999765 4577888997666 88855 6899999999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCC-eE--EEEeecCCCCCceeeEEE
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGG-EK--RCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~-~~--~~~~~~~~~~~~v~~~~~ 188 (271)
|.||.-++++. .+......|...|++++|.|. |-.|+.++.||.|.+.+.++. .- .+....|... +++++|
T Consensus 82 VIiWke~~g~w--~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G--vnsVsw 157 (299)
T KOG1332|consen 82 VIIWKEENGRW--TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG--VNSVSW 157 (299)
T ss_pred EEEEecCCCch--hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc--cceeee
Confidence 99999988764 445566789999999999995 667889999999999998754 22 2234445544 899999
Q ss_pred CCC---C-----------CEEEEecCCCcEEEEEcCCce--eEEEecCCcceeEEEEEecCC----cEEEEeC--CeEEE
Q 024185 189 TPD---G-----------QYVVSGSGDGTLHAWNINTRN--EVACWNGNIGVVACLKWAPRR----AMFVAAS--SVLSF 246 (271)
Q Consensus 189 ~~~---~-----------~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~--~~v~i 246 (271)
.|- | +.|++|+.|+.|+||+..+++ .-.++.+|...|+.++|.|.- .+|+++| |++.|
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 986 4 579999999999999998753 344589999999999999963 4799998 99999
Q ss_pred EcCC
Q 024185 247 WIPN 250 (271)
Q Consensus 247 w~~~ 250 (271)
|..+
T Consensus 238 wt~~ 241 (299)
T KOG1332|consen 238 WTKD 241 (299)
T ss_pred EEec
Confidence 9876
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=6.2e-22 Score=163.67 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=189.4
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
|.-+-+.+|+.+|+++.++...+ ..+..|+...+.|+.++|..||..+ +++|+..|.+.+||++..+.+..+
T Consensus 212 PaLDVVaiG~~~G~ViifNlK~d----kil~sFk~d~g~VtslSFrtDG~p~----las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 212 PALDVVAIGLENGTVIIFNLKFD----KILMSFKQDWGRVTSLSFRTDGNPL----LASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred CcceEEEEeccCceEEEEEcccC----cEEEEEEccccceeEEEeccCCCee----EEeccCCceEEEEEcCCCeeeeee
Confidence 44477889999999999999887 6667788878999999999999885 668899999999999988877666
Q ss_pred e-cC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-----------------------------
Q 024185 89 R-LR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT----------------------------- 136 (271)
Q Consensus 89 ~-~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----------------------------- 136 (271)
. .| ++....|-|....+++++.|..+++|-..++.-.|.....-.||.
T Consensus 284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS 363 (910)
T ss_pred eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence 4 44 345577888888888888888777664332211111111111111
Q ss_pred --------------------------------------------------------------------------------
Q 024185 137 -------------------------------------------------------------------------------- 136 (271)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (271)
T Consensus 364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~ 443 (910)
T KOG1539|consen 364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR 443 (910)
T ss_pred hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence
Q ss_pred -----cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe---ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 137 -----AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF---SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 137 -----~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
..+++++.++-|++.+.|+..|.|.+|++.+|-....+ ..|..+ |+.++.+.-++.+++++.+|.+++||
T Consensus 444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~--V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE--VTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc--eeEEEecCCCceEEEccCcceEEEEe
Confidence 45788889999999999999999999999999887777 355554 99999998899999999999999999
Q ss_pred cCCceeEE-----------------------------------------EecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 209 INTRNEVA-----------------------------------------CWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 209 ~~~~~~~~-----------------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
..+...+. .+.+|...|++++|||||++|++++ ++|+
T Consensus 522 f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 522 FKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred cCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 87655322 2348999999999999999999998 8899
Q ss_pred EEcCCCCCCCcCCC
Q 024185 246 FWIPNPSSNSTDES 259 (271)
Q Consensus 246 iw~~~~~~~~~~~~ 259 (271)
+||+.++.++....
T Consensus 602 ~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 602 TWDLPTGTLIDGLL 615 (910)
T ss_pred EEeccCcceeeeEe
Confidence 99999998876553
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=5.4e-23 Score=151.51 Aligned_cols=203 Identities=15% Similarity=0.215 Sum_probs=160.4
Q ss_pred cccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecCcc----------eeEEE-----ecC--CcceEEEcC-C
Q 024185 41 FATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLMLAS----------FQGIL-----RLR--GRPTVAFDQ-Q 101 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~-----~~~--~~~~~~~~~-~ 101 (271)
-..|.+.|+.+.+.+.. ++ +++|+.||.|.+||+++.. .+..+ .+| .+..+.|-| |
T Consensus 39 ~r~HgGsvNsL~id~tegry-----mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRY-----MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eccCCCccceeeeccccceE-----EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 45788999999998864 55 7899999999999997542 11111 122 244567777 5
Q ss_pred CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC---CcEEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 102 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND---GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 102 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
...+.+++-|.++++||.++.+. ...+. .++.|.+-+|||- ..++|+|..+-.|++.|+.+|...+++.+|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~--a~~F~---me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQE--AVDFK---MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred CceeecccccceEEEeeccccee--eEEee---cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 66788889999999999998775 22333 3478999999993 4577888899999999999999999999999
Q ss_pred CCCceeeEEECCCCCEE-EEecCCCcEEEEEcCCc-eeEEE--------------ecCCcceeEEEEEecCCcEEEEeC-
Q 024185 179 SPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTR-NEVAC--------------WNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.. |.++.|+|...++ ++|+.||.|++||++.. .+... -..|.+.+++++|+.++.++++++
T Consensus 189 ~~--vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 189 DG--VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred Cc--eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 87 9999999998865 68888999999999753 22222 245778999999999999999998
Q ss_pred -CeEEEEcCCCCCCC
Q 024185 242 -SVLSFWIPNPSSNS 255 (271)
Q Consensus 242 -~~v~iw~~~~~~~~ 255 (271)
..+++|+..+|+..
T Consensus 267 d~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNT 281 (397)
T ss_pred ccceEEeecccCccc
Confidence 77999999888653
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=149.27 Aligned_cols=200 Identities=9% Similarity=0.092 Sum_probs=156.2
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 120 (271)
.|.-.+..+-...++.+ +++++.|..|.+|+++ |+.++.+.... ....+.||+|+++++++---.|++|.+-
T Consensus 185 kh~v~~i~iGiA~~~k~-----imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKY-----IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred hcccceEEEeecCCceE-----EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 34445555666777777 8899999999999997 88888887653 3448999999999999888889999873
Q ss_pred CCCC----CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-------CeEEEEe--ecCCCCCceeeEE
Q 024185 121 SYDK----GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-------GEKRCGF--SLEPSPNTNTEAT 187 (271)
Q Consensus 121 ~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~--~~~~~~~~v~~~~ 187 (271)
-.+. +....+.+++|...|..++|||+...+++.+.||++++||..- .+.++.. ..+...+....+.
T Consensus 259 f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred eccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 2221 2234678999999999999999999999999999999999742 1222222 1122222344799
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
++|+|+.|+.+.. ..++++..++++....+ ..|...|.+++|+++|+++++++ ..+++..-
T Consensus 339 lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 339 LSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred eCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 9999998876653 47999999998887766 56899999999999999999998 77888763
No 116
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=156.72 Aligned_cols=209 Identities=14% Similarity=0.083 Sum_probs=179.5
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
-.+|..+|-.++|||-...-+. |++++.|+.-.+-+-++|..+.+|.+|. ++...++.+..+-++++.|-+-++||
T Consensus 10 c~ghtrpvvdl~~s~itp~g~f--lisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYF--LISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EcCCCcceeEEeccCCCCCceE--EEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4689999999999875554444 8999999999999999999999999996 45577777777888999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
.-++.. ...+ .|..-|..++|+.|.++|++|+.+.-+++||+...+ +...+.+|... |..+.|....+.+++
T Consensus 88 a~tgde----lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~--Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 88 AVTGDE----LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG--IRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhh----hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc--ceeEEEeccCceEEe
Confidence 998875 3333 377889999999999999999999999999997654 34556667665 999999999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCCC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~~ 259 (271)
.++|++|++||.++++.++++. ...+|+++..+++|++|.++. +.|++||..+..+++..+
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc
Confidence 9999999999999999999997 466799999999999999997 889999999988776655
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=7.1e-24 Score=159.95 Aligned_cols=224 Identities=15% Similarity=0.223 Sum_probs=171.8
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-----------
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML----------- 81 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~----------- 81 (271)
.++-+..+|.+.+|+.... .....|+.|.+.|..+++.. .. +++++.|.+|+.|-++.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~--~~-----~~tvgdDKtvK~wk~~~~p~~tilg~s~ 149 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ--TS-----FFTVGDDKTVKQWKIDGPPLHTILGKSV 149 (433)
T ss_pred hhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc--cc-----eEEecCCcceeeeeccCCcceeeecccc
Confidence 3445567999999998776 44566999999999999987 22 56888888888886321
Q ss_pred ---------------------------cceeEEEec--CCcceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEE
Q 024185 82 ---------------------------ASFQGILRL--RGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 82 ---------------------------~~~~~~~~~--~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 131 (271)
..+++.+.- ..+.++.|+|-. ..|++++.|+.|.+||+++... +....
T Consensus 150 ~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P--l~KVi 227 (433)
T KOG0268|consen 150 YLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP--LKKVI 227 (433)
T ss_pred ccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc--cceee
Confidence 112222221 235668888866 5677788999999999998775 44444
Q ss_pred ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 132 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 132 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
+. ..-..++|+|++-.+.++++|..++.||++.- +++..+..|... |.+++|||.|+-+++|+.|.+|+||..+
T Consensus 228 ~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA--V~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 228 LT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA--VMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ee---ccccceecCccccceeeccccccceehhhhhhcccchhhccccee--EEEeccCCCcchhccccccceEEEeecC
Confidence 33 45677899998888999999999999999864 455666777665 9999999999999999999999999998
Q ss_pred CceeEEEec-CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 211 TRNEVACWN-GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 211 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
.+.....+. .....|.++.||.|.+++++|| ++|++|...-.+.
T Consensus 303 ~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 303 HGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred CCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 776655441 1235699999999999999999 8899998765443
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.8e-23 Score=159.54 Aligned_cols=209 Identities=15% Similarity=0.132 Sum_probs=171.8
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec---------Ccc
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM---------LAS 83 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~ 83 (271)
.++.+...+.++.|...+| ..+..+..|-..++++.|+.|+.. |++|+.||.|.+|.+. +-+
T Consensus 95 ~l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~-----iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSH-----IITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred EEEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcE-----EEecCCCccEEEEEEEeecccccCCCcc
Confidence 3444447899999999999 666668999999999999999999 9999999999999773 235
Q ss_pred eeEEEecCCcce--EEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 84 FQGILRLRGRPT--VAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
+...+..|..+. +...+ ...++++++.|.++++||+..+.. +.... .+..+.+++..|.++.++.|+.+|.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llti~---fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLTIT---FPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee--eEEEe---cCCcceeEEEcccccEEEecCCcce
Confidence 677788886444 44443 346899999999999999999876 33333 3478999999999999999999999
Q ss_pred EEEEECCCC----------------eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc
Q 024185 160 IYVLDAYGG----------------EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG 223 (271)
Q Consensus 160 i~~~d~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 223 (271)
|.+.++... .....+.+|.+...|+|++++-||..|++|+.||.++|||+.+.++++++....+
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG 320 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence 999887432 2345567777755799999999999999999999999999999999998876788
Q ss_pred eeEEEEEecCCc
Q 024185 224 VVACLKWAPRRA 235 (271)
Q Consensus 224 ~v~~~~~s~~~~ 235 (271)
+|+.+.+.|-.+
T Consensus 321 pVtnL~i~~~~~ 332 (476)
T KOG0646|consen 321 PVTNLQINPLER 332 (476)
T ss_pred ccceeEeecccc
Confidence 999999977544
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.8e-23 Score=157.79 Aligned_cols=208 Identities=11% Similarity=0.128 Sum_probs=163.0
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i 114 (271)
.+..+.+|.+.|.+++-+|..-.. +++|+.||.|++||+.+..+..+++.|...+ +++.. ..++++++|.+|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~----~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLST----VASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred chhhccccccccchhhcCcchhhh----hhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 334468899999999999987332 7899999999999999999999999997444 77665 567888888888
Q ss_pred EEEeCCCCCC------------------------------------CcceEEEecCCccceEEEEEcCCCc-EEEEEecC
Q 024185 115 KLFDSRSYDK------------------------------------GPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTN 157 (271)
Q Consensus 115 ~i~d~~~~~~------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 157 (271)
+.|.++.... .|+..+.. ..+.+.++.|+|-.. .|++++.|
T Consensus 132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw--G~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW--GADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeec--CCCceeEEecCCCcchheeeeccC
Confidence 8887443110 01111111 125678889999544 56667789
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCcE
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
+.|.+||++++++++.+..... -..++|+|.+--+++|++|..++.+|++.. +++....+|.+.|.+++|||.|+-
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 9999999999999888665544 344999998888889999999999999874 456777899999999999999999
Q ss_pred EEEeC--CeEEEEcCCCCCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~ 255 (271)
+++|| .+|+||..+.+.-.
T Consensus 287 fvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred hccccccceEEEeecCCCcch
Confidence 99999 88999998876543
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=5.3e-23 Score=159.48 Aligned_cols=209 Identities=12% Similarity=0.153 Sum_probs=174.4
Q ss_pred EEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE-EEe-----------------cC--CcceEE
Q 024185 38 IEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG-ILR-----------------LR--GRPTVA 97 (271)
Q Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-----------------~~--~~~~~~ 97 (271)
.+.+..|.-.+.+++++|++++ .++++.+++|.-|++.+++... .++ .| .+.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-----~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a 209 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-----VFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA 209 (479)
T ss_pred ceeeccccCcceEEEeeccccc-----eeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence 4557788899999999999998 8899999999999998876431 111 22 245699
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC
Q 024185 98 FDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE 177 (271)
Q Consensus 98 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 177 (271)
.++||++|++|+.|..|.||+.++.+. ...+.+|.+.|.+++|-.....+++++.|.++++|++.....+.++.+|
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~eh----v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEH----VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccch----hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 999999999999999999999999886 6668899999999999998889999999999999999988888888888
Q ss_pred CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 178 PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
+.. |..+.-..-++.+-+|+.|+++++|++. -+....+.+|.+.+.|++|-.+ ..+++|| |.|.+|++.+.+++
T Consensus 286 qd~--v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDG--VLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccc--eeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 876 8778777777777778899999999994 3344456788889999999865 4677777 99999999998877
Q ss_pred cCCC
Q 024185 256 TDES 259 (271)
Q Consensus 256 ~~~~ 259 (271)
-...
T Consensus 362 f~~~ 365 (479)
T KOG0299|consen 362 FTSR 365 (479)
T ss_pred eEee
Confidence 6554
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=4.1e-21 Score=152.03 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=162.4
Q ss_pred eecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-Ccce
Q 024185 17 ARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPT 95 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 95 (271)
+..++.+..++...+ .....+..+.. +..+.++|+++.+ +++++.++.+++||..+++....+..+ ....
T Consensus 7 ~~~d~~v~~~d~~t~----~~~~~~~~~~~-~~~l~~~~dg~~l----~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 77 (300)
T TIGR03866 7 NEKDNTISVIDTATL----EVTRTFPVGQR-PRGITLSKDGKLL----YVCASDSDTIQVIDLATGEVIGTLPSGPDPEL 77 (300)
T ss_pred ecCCCEEEEEECCCC----ceEEEEECCCC-CCceEECCCCCEE----EEEECCCCeEEEEECCCCcEEEeccCCCCccE
Confidence 355788888887655 23344554443 5669999999863 346778999999999998887776554 3556
Q ss_pred EEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-eEEEEECCCCeEEEE
Q 024185 96 VAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCG 173 (271)
Q Consensus 96 ~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~ 173 (271)
++|+|+++.++++ +.++.+++||+.+.+. ...+. +...+.+++|+|+|+++++++.++ .+..||.++++....
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~----~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKV----LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeE----EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 8999999977665 5689999999987653 33332 223468899999999999888764 577889988877665
Q ss_pred eecCCCCCceeeEEECCCCCEEEEe-cCCCcEEEEEcCCceeEEEecCCc-----c--eeEEEEEecCCcEEEEe--C-C
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSG-SGDGTLHAWNINTRNEVACWNGNI-----G--VVACLKWAPRRAMFVAA--S-S 242 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-----~--~v~~~~~s~~~~~l~~~--~-~ 242 (271)
...... ...++|+|++++++.+ ..++.|++||+++++.+..+..+. . ....++|+|++++++.+ + +
T Consensus 153 ~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 153 VLVDQR---PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEcCCC---ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 433222 5668999999988655 458999999999998877654221 1 23468899999975544 2 6
Q ss_pred eEEEEcCCCCCCCc
Q 024185 243 VLSFWIPNPSSNST 256 (271)
Q Consensus 243 ~v~iw~~~~~~~~~ 256 (271)
.+.+||.++++...
T Consensus 230 ~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 230 RVAVVDAKTYEVLD 243 (300)
T ss_pred eEEEEECCCCcEEE
Confidence 79999998877654
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=150.28 Aligned_cols=224 Identities=12% Similarity=0.111 Sum_probs=181.9
Q ss_pred cceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe----cCc------------
Q 024185 19 QNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL----MLA------------ 82 (271)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~----~~~------------ 82 (271)
.+....+|....+ ..+..|.+|.+.|+++.|++.+.+ +++++.|++..||.. +..
T Consensus 168 ADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s~~L-----~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 168 ADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNSGLL-----LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cccceeEEeeccc----cceeeecccccceeeEEeccccce-----EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 4566667776666 556669999999999999999998 889999999999962 100
Q ss_pred ------------------------ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc
Q 024185 83 ------------------------SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 136 (271)
Q Consensus 83 ------------------------~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 136 (271)
-++..+.+|. +.+..|-..|+.+++++.|.+-.+||+++++. ...+.+|.
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~----v~~LtGHd 314 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV----VNILTGHD 314 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce----eccccCcc
Confidence 0222334443 33466777889999999999999999999987 67788999
Q ss_pred cceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce-e
Q 024185 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-E 214 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~ 214 (271)
...+.++-+|..+++++++.|.+.++||.+.. ..+..|.+|... |++..|..|.+ +++|++|.+|++||+++.+ +
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt--VTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT--VTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc--eeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence 99999999999999999999999999999843 346678888877 99999988764 8999999999999999754 4
Q ss_pred EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 215 VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 215 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.++. -.++++.++.+..+..++.-- ..|++||++..++.....
T Consensus 392 lATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 392 LATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred ceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 56665 456789999998888888775 679999999988776654
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.1e-22 Score=154.75 Aligned_cols=238 Identities=16% Similarity=0.166 Sum_probs=189.7
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
..|.-+.++.+.-++.+.++..- |..++ .++.+.-...++.+..|.|+|... +++++.....+.||+++.+..+
T Consensus 221 FHp~~plllvaG~d~~lrifqvD-Gk~N~-~lqS~~l~~fPi~~a~f~p~G~~~----i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQVD-GKVNP-KLQSIHLEKFPIQKAEFAPNGHSV----IFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEec-CccCh-hheeeeeccCccceeeecCCCceE----EEecccceEEEEeecccccccc
Confidence 34555667777777777776654 33333 455566778899999999999832 6689999999999999887544
Q ss_pred EEe--cC---CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 87 ILR--LR---GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 87 ~~~--~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
.-+ ++ .......+|++++|+..+..|.|.+....+++. +..+.+ .+.|..+.|+.|++.|++.+.+|.|+
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~Ki---eG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSFKI---EGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hheeee---ccEEeeEEEecCCcEEEEEcCCceEE
Confidence 332 22 234488899999999999999999999999886 444443 47899999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC------ceeEEEecCCcceeEEEEEecCCc
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT------RNEVACWNGNIGVVACLKWAPRRA 235 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~s~~~~ 235 (271)
+||++...+++++..... ..-++++.++++.|+|+|+..|.|.|||..+ .+++..+..-...|+++.|+||..
T Consensus 370 v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEecCCcceEEEEeecCc-cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 999999999999876554 3456788899999999999999999999653 566777776778899999999999
Q ss_pred EEEEeC----CeEEEEcCCCCCCCc
Q 024185 236 MFVAAS----SVLSFWIPNPSSNST 256 (271)
Q Consensus 236 ~l~~~~----~~v~iw~~~~~~~~~ 256 (271)
+||.+| +.+++-.+.+...-+
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred hhhhhhhccccceEEEeccceeeec
Confidence 999998 558888887765544
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-21 Score=144.88 Aligned_cols=237 Identities=12% Similarity=0.100 Sum_probs=181.7
Q ss_pred EEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 4 IVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
+-|+ |..+.|+++.-+|.+..++...... +..-.|..++.+++|.++.. +++|+.||.|+.+|+.++.
T Consensus 19 v~f~-~~~~~LLvssWDgslrlYdv~~~~l-----~~~~~~~~plL~c~F~d~~~------~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 19 VKFS-PSSSDLLVSSWDGSLRLYDVPANSL-----KLKFKHGAPLLDCAFADEST------IVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred EEEc-CcCCcEEEEeccCcEEEEeccchhh-----hhheecCCceeeeeccCCce------EEEeccCceEEEEEecCCc
Confidence 3455 7778899988899999888765511 11224678899999998665 5699999999999999887
Q ss_pred eeEEEec-CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 84 FQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
..+.-.. ..+.|+..++....+++|+.|++|++||.++... ...+. ....|.++..+ |+.|++|+.+..+.+
T Consensus 87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~----~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV----VGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLI 159 (323)
T ss_pred ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc----ccccc-cCceEEEEecc--CCEEEEeecCceEEE
Confidence 6544332 3578899998888999999999999999997443 33332 23478777655 678999999999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc----eeEEEecCCc---------ceeEEEE
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNI---------GVVACLK 229 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~ 229 (271)
||+++...........-...++++++-|++.-.++++-||.|.+=.+... +....|+.|. .+|++++
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 99998765443333333355899999999888999999999988777655 4445566663 4799999
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
|+|-...|+||+ |-|.+||+.+.+.+.+..
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhcc
Confidence 999988999998 889999999988776655
No 125
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.2e-21 Score=144.66 Aligned_cols=219 Identities=13% Similarity=0.108 Sum_probs=170.8
Q ss_pred eeEEee-ecceeeEEEEeec-cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 12 QALLFA-RQNIILILLESLC-GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
..++.+ .-++.+..|+... +...+ +....|.+++.+++|+.+|.. +++|+.|+.+++||+.+++ ...+.
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~~~~---ka~~~~~~PvL~v~Wsddgsk-----Vf~g~~Dk~~k~wDL~S~Q-~~~v~ 110 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQLVP---KAQQSHDGPVLDVCWSDDGSK-----VFSGGCDKQAKLWDLASGQ-VSQVA 110 (347)
T ss_pred CceEEecccCCceEEEEEecCCcccc---hhhhccCCCeEEEEEccCCce-----EEeeccCCceEEEEccCCC-eeeee
Confidence 334433 3488888888766 33222 346678999999999999988 8899999999999999996 45666
Q ss_pred cCC--cceEEEcCCCC--EEEEEecCCeEEEEeCCCCCCCcceEEEecC-------------------------------
Q 024185 90 LRG--RPTVAFDQQGL--VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG------------------------------- 134 (271)
Q Consensus 90 ~~~--~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------- 134 (271)
.|. +.++.|-+... .|++|+.|.+|+.||++.... +....+..
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCCCe--eeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence 664 55588876554 899999999999999986443 11111111
Q ss_pred ----C----ccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--eEEEEeecCCCC-------CceeeEEECCCCCEEEE
Q 024185 135 ----D----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSP-------NTNTEATFTPDGQYVVS 197 (271)
Q Consensus 135 ----~----~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~ 197 (271)
+ .-.++|++..+|....+.|+-+|.+.+..+..+ +.-..|+.|... -.|.+++|+|.-..|++
T Consensus 189 e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 189 EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 0 134788998888888899999999999988776 334456666642 24778999999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
++.||++.+||-.....+++.+.|..+|++.+|+.+|.+++-+-
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999988888999899999999999999999998774
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=4.9e-22 Score=161.23 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=175.6
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEe-eEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceE
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRG-LFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTV 96 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 96 (271)
..++.+..|+...+.+-+ ...+.++.+-+.. +++.+..+.. +++|+.|+.+.+|...+..+..++.+|..+++
T Consensus 32 sRd~t~~vw~~~~~~~l~--~~~~~~~~g~i~~~i~y~e~~~~~----l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC 105 (745)
T KOG0301|consen 32 SRDGTVKVWAKKGKQYLE--THAFEGPKGFIANSICYAESDKGR----LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC 105 (745)
T ss_pred CCCCceeeeeccCccccc--ceecccCcceeeccceeccccCcc----eEeecccceEEEEecCCCCchhhhhcccccee
Confidence 347787777775553222 2456777777766 6666533321 67999999999999999999999999987776
Q ss_pred EEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe
Q 024185 97 AFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 97 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 174 (271)
+.+- ++. +++|+.|.++++|....- ...+.+|+..|.+++.-|++ .+++|+.|.+|++|.- ++.+++|
T Consensus 106 ~ls~~~~~~-~iSgSWD~TakvW~~~~l------~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf 175 (745)
T KOG0301|consen 106 SLSIGEDGT-LISGSWDSTAKVWRIGEL------VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTF 175 (745)
T ss_pred eeecCCcCc-eEecccccceEEecchhh------hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhh
Confidence 6653 444 899999999999997653 34488999999999999988 7899999999999974 7888999
Q ss_pred ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 175 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
.+|..- |+.+++-+++. +++++.||.|+.|++ +++.+.++.+|..-|.+++..+++..+++++ ++++||+..
T Consensus 176 ~gHtD~--VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 176 SGHTDC--VRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccchhh--eeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 998876 99999988764 788999999999999 8999999999999999999888888888888 899999976
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=6.5e-22 Score=150.15 Aligned_cols=229 Identities=14% Similarity=0.168 Sum_probs=166.7
Q ss_pred eEEee-ecceeeEEEEeeccc------------eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe
Q 024185 13 ALLFA-RQNIILILLESLCGI------------YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL 79 (271)
Q Consensus 13 ~l~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~ 79 (271)
.+... ..+|.+.+++..... .....+-.+.+|.+.-..+.|||-..- .+++|..-+.|++|..
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g----~LlsGDc~~~I~lw~~ 241 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG----RLLSGDCVKGIHLWEP 241 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc----ccccCccccceEeeee
Confidence 33333 346777777643211 112245567888888999999994332 1678889999999999
Q ss_pred cCccee---EEEecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 80 MLASFQ---GILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 80 ~~~~~~---~~~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
.++.-. ..+.+|. +.-++|||.. ..|++|+.||+|+|||++.+..++ ....++|.+.|..+.|+.+-.+|++
T Consensus 242 ~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 242 STGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred ccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeEeeccCCceeeEEccCCcceeee
Confidence 887532 2344564 4449999976 588999999999999999885533 4445889999999999998889999
Q ss_pred EecCCeEEEEECCC---CeEEEEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCcee---------------
Q 024185 154 TTTNNNIYVLDAYG---GEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNE--------------- 214 (271)
Q Consensus 154 ~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--------------- 214 (271)
|+.||+++|||+|+ ++++..|+.|..+ |+++.|+|. ...+++++.|..|.+||+..-.-
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p--ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dl 397 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAP--ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDL 397 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCC--eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcC
Confidence 99999999999986 5678899999987 999999986 45677888899999999853111
Q ss_pred -EEEecCC--cceeEEEEEecCCc-EEEEeC-CeEEEEcC
Q 024185 215 -VACWNGN--IGVVACLKWAPRRA-MFVAAS-SVLSFWIP 249 (271)
Q Consensus 215 -~~~~~~~--~~~v~~~~~s~~~~-~l~~~~-~~v~iw~~ 249 (271)
.+.+--| ...+..+.|+++-. ++++.+ .-+.||..
T Consensus 398 PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 398 PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred CceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 1112223 23578899999643 566555 55666643
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.1e-21 Score=153.55 Aligned_cols=218 Identities=14% Similarity=0.185 Sum_probs=176.4
Q ss_pred cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-EEEecCC---cceEEEcCCCCEEE
Q 024185 31 GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-GILRLRG---RPTVAFDQQGLVFA 106 (271)
Q Consensus 31 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~ 106 (271)
+..+.-+++++.-....|.+++++.+.+. ||.+-.||.|-+|+++.+-.. ..+.++. +..++|++ +.+|+
T Consensus 11 ~~m~vhrcrf~d~~Ps~I~slA~s~kS~~-----lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLF 84 (691)
T KOG2048|consen 11 GKMQVHRCRFVDYKPSEIVSLAYSHKSNQ-----LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLF 84 (691)
T ss_pred ceeEEEEEEEEeeeccceEEEEEeccCCc-----eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEE
Confidence 33444577788888899999999999988 888999999999999876543 4455553 55699994 55578
Q ss_pred EEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeE
Q 024185 107 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 107 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 186 (271)
+.+.+|.|.-||+.+.+. ...+....+.|.+++.+|.+..++.|+.||.+..++...++...........+.+.++
T Consensus 85 S~g~sg~i~EwDl~~lk~----~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQ----KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred eecCCceEEEEecccCce----eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 888899999999999886 7777777899999999999999999999998888888888776665444444669999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEe--------cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACW--------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
+|+|++..++.|+.||.|++||..++..++.. +....-|+++.|-.++ .|++|+ |+|.+||...+.+..
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh
Confidence 99999999999999999999999998887722 1123457888888665 577775 999999999998765
Q ss_pred CCC
Q 024185 257 DES 259 (271)
Q Consensus 257 ~~~ 259 (271)
...
T Consensus 240 S~~ 242 (691)
T KOG2048|consen 240 SHS 242 (691)
T ss_pred hhh
Confidence 543
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=150.07 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=159.4
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG 125 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 125 (271)
..++.|++.|.+ +|+|+.||.+.|||+.+...-+.+.+| .+.+++||+||++|++++.|..|.+||+..+..
T Consensus 26 a~~~~Fs~~G~~-----lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~- 99 (405)
T KOG1273|consen 26 AECCQFSRWGDY-----LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP- 99 (405)
T ss_pred cceEEeccCcce-----eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-
Confidence 778999999999 999999999999999998877778776 577799999999999999999999999988764
Q ss_pred cceEEEecC-------Cc-------------------------------------cceEEEEEcCCCcEEEEEecCCeEE
Q 024185 126 PFDTFLVGG-------DT-------------------------------------AEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 126 ~~~~~~~~~-------~~-------------------------------------~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
.+...+.. |. ....+..|.+.|+++++|...|.+.
T Consensus 100 -l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 100 -LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred -eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 33333221 00 0011223666788999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc-------ee--EEEecC--CcceeEEEEE
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR-------NE--VACWNG--NIGVVACLKW 230 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~--~~~~v~~~~~ 230 (271)
++|..+.+++..++.... ..|..+.++..|++++.-+.|+.|+.|+++.- ++ .+.++. ....=.+++|
T Consensus 179 v~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred EEecchheeeeeeeechh-eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 999999999988876551 34889999999999999999999999998631 11 111110 1222357889
Q ss_pred ecCCcEEEEeC---CeEEEEcCCCCCCCcCCC
Q 024185 231 APRRAMFVAAS---SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 231 s~~~~~l~~~~---~~v~iw~~~~~~~~~~~~ 259 (271)
|.+|.|++.++ ..++||.-..|.+.+...
T Consensus 258 s~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred cCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 99999999988 569999999988776554
No 130
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=146.17 Aligned_cols=226 Identities=15% Similarity=0.241 Sum_probs=171.3
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEccccc--ceEEeeEEecCCchhhhhhhhhhccCceEEEEEe-cCcc
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSK--GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL-MLAS 83 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~ 83 (271)
..|.+...+....+..|.+++.++|.....+ +.+.+.. .+..++.|+|||..+++ +..+.|++||+ +.|+
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfa------GykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFA------GYKRCIRVFDTSRPGR 191 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCCeEee------cccceEEEeeccCCCC
Confidence 3455555666667888999999999665542 1122222 24567999999998533 88899999999 5554
Q ss_pred eeE---EEec-----CC-cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE
Q 024185 84 FQG---ILRL-----RG-RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL 153 (271)
Q Consensus 84 ~~~---~~~~-----~~-~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 153 (271)
.-. ++.. .+ +.+++|+|-. +.++.++....+-||.-..... ...+.+|.+.|+.+.|.++|+.|++
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecccCCCeeeEEeccCcCeecc
Confidence 211 1111 12 4669999955 5899999988998888777665 6667799999999999999999999
Q ss_pred Eec-CCeEEEEECCCC-eEEEEeecCCC-CCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEE
Q 024185 154 TTT-NNNIYVLDAYGG-EKRCGFSLEPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLK 229 (271)
Q Consensus 154 ~~~-d~~i~~~d~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~ 229 (271)
|+. |..|..||+|.. .++..+..|.. .++=.-+...|++++|++|+.||.|++||++. +..+..+..+...++.++
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence 987 788999999864 44555655544 22222356689999999999999999999998 777888888999999999
Q ss_pred EecCCcEEEEeCCe
Q 024185 230 WAPRRAMFVAASSV 243 (271)
Q Consensus 230 ~s~~~~~l~~~~~~ 243 (271)
++|--.++++++|.
T Consensus 348 lnP~mpilatssGq 361 (406)
T KOG2919|consen 348 LNPIMPILATSSGQ 361 (406)
T ss_pred cCcccceeeeccCc
Confidence 99998899999866
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-21 Score=161.55 Aligned_cols=209 Identities=17% Similarity=0.270 Sum_probs=167.2
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
.++.+..+..+..+..-.+..+.. +...+-++.+++++.+|++ +|.|+.|-.|++-+..+......+.+|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~i----L~Rftlp~r~~~v~g~g~~-----iaagsdD~~vK~~~~~D~s~~~~lrgh~ 138 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTI----LARFTLPIRDLAVSGSGKM-----IAAGSDDTAVKLLNLDDSSQEKVLRGHD 138 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccce----eeeeeccceEEEEecCCcE-----EEeecCceeEEEEeccccchheeecccC
Confidence 455556677777776666644433 3334567889999999999 8899999999999999999899999986
Q ss_pred --cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecC-------C-ccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 93 --RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGG-------D-TAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 93 --~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~-~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
+.++.|+|++++||+.+.||.|++||++++.. ...+.+ . ...+..++|+|+|..++....|+.|++
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~----~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL----SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchh----hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 45599999999999999999999999998765 222111 1 345678999999888888899999999
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEE
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 238 (271)
|+..+.+....+........+..++|+|+|+|||+++.+|.|.|||..+-+. ......|.+++|.|+.+-+-
T Consensus 215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred EccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeE
Confidence 9999998888877666555588999999999999999999999999987222 22346799999999877543
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=161.92 Aligned_cols=195 Identities=15% Similarity=0.218 Sum_probs=167.6
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE---ecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL---RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
....+.+++.+++|++ .+.|...|.|-+||+++|-....+ +.|. +..++...-++.+++++.+|.++.||
T Consensus 447 ~~~~~~av~vs~CGNF-----~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNF-----VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred cCcceEEEEEeccCce-----EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe
Confidence 4467889999999998 778899999999999999888888 3554 45577777778899999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
..+... .....+ ...+.++.++.....++++..|-.|+++|..+.+.++.|.+|.+. +++++|||||++++++
T Consensus 522 f~~k~l--~~~l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr--itd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 522 FKKKVL--KKSLRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR--ITDMTFSPDGRWLISA 594 (910)
T ss_pred cCCcce--eeeecc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc--eeeeEeCCCCcEEEEe
Confidence 987664 333333 356888889988889999999999999999999999999999987 9999999999999999
Q ss_pred cCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCC
Q 024185 199 SGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~ 251 (271)
+.|++|++||+.++.++..+. -..+..++.|+|+|.+||++. ..|++|.-.+
T Consensus 595 smD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred ecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999999999998875 356789999999999999997 5599996543
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.1e-21 Score=141.69 Aligned_cols=195 Identities=11% Similarity=0.095 Sum_probs=152.4
Q ss_pred eeEEeeecceeeEEEEeeccce--e--------eE-EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec
Q 024185 12 QALLFARQNIILILLESLCGIY--Q--------CM-IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM 80 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~--~--------~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~ 80 (271)
+.++-+.++|.+..++...... + +. ....-.+|+-.|..+.|-|-..-+ |.+++.|.++++||..
T Consensus 57 rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm----FtssSFDhtlKVWDtn 132 (397)
T KOG4283|consen 57 RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM----FTSSSFDHTLKVWDTN 132 (397)
T ss_pred eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce----eecccccceEEEeecc
Confidence 4566677899999988765431 1 10 112234677788888888876665 5699999999999999
Q ss_pred CcceeEEEecCC-cceEEEcCC---CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcE-EEEEe
Q 024185 81 LASFQGILRLRG-RPTVAFDQQ---GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-MLLTT 155 (271)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~ 155 (271)
+-+....|..++ ++.-+++|- .-++|+|..+-.|++.|+..+.. ...+.+|.+.|.++.|+|...+ |++|+
T Consensus 133 TlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~----sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 133 TLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF----SHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred cceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc----eeeeccccCceEEEEeccCceeEEEecC
Confidence 999888887765 666777774 34788888899999999999997 8889999999999999997766 57889
Q ss_pred cCCeEEEEECCCC-eEEEEeecCC------------CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 156 TNNNIYVLDAYGG-EKRCGFSLEP------------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 156 ~d~~i~~~d~~~~-~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
.||.+++||++.. .+...+..|. ..+.+..++|+.|+.++++++.|..+++|+..+|+.
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 9999999999754 3444443332 124588999999999999999999999999887653
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2.2e-22 Score=158.11 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=179.3
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
+|....|+++..-..+.+|+......... ..+....-+-..++.+||.+. .+++..||.|.|||+.+...++.
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprik--aeltssapaCyALa~spDakv-----cFsccsdGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIK--AELTSSAPACYALAISPDAKV-----CFSCCSDGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchh--hhcCCcchhhhhhhcCCccce-----eeeeccCCcEEEEEcccceeeec
Confidence 45556777887777777777765521111 112222234456889999998 67889999999999999999999
Q ss_pred EecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 88 LRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 88 ~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
|++| +..|+.+++||..|.+|+-|.+|+-||++++.. .+... ....|.++.++|++.+++.|-.++.+.+...
T Consensus 547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq--lqqhd---F~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ--LQQHD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh--hhhhh---hhhhheecccCCCccceeeecccCcEEEEec
Confidence 9998 478899999999999999999999999998875 22222 3478999999999999999999999999886
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeCC--e
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASS--V 243 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~ 243 (271)
...+ .+.+..|. .-|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+. .+.|.++..|-|.+++++||| .
T Consensus 622 skp~-kyqlhlhe--ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 622 SKPE-KYQLHLHE--SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred CCcc-ceeecccc--cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcc
Confidence 5433 33444444 4599999999999999999999999999999999888864 567999999999999999994 3
Q ss_pred EEEEcC
Q 024185 244 LSFWIP 249 (271)
Q Consensus 244 v~iw~~ 249 (271)
-.+|.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 666653
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=144.67 Aligned_cols=231 Identities=16% Similarity=0.242 Sum_probs=179.2
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
-...|.+|+.||.++.++..+. ..-+.+.+|..+|.+++||++|+. |++++.|..+.+||+..|.+++.+.
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~----~iar~lsaH~~pi~sl~WS~dgr~-----LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTF----RIARMLSAHVRPITSLCWSRDGRK-----LLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred CcceeeeeccCCcEEEEEcccc----chhhhhhccccceeEEEecCCCCE-----eeeecCCceeEEEeccCCCceeEEE
Confidence 3467889999999999998876 445668999999999999999999 9999999999999998876655432
Q ss_pred cCC------------------------------------------------cceEEEcCCCCEEEEEecCCeEEEEeCCC
Q 024185 90 LRG------------------------------------------------RPTVAFDQQGLVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 90 ~~~------------------------------------------------~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 121 (271)
... ..+..|.+.|+++++|...|.+.+||.++
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 110 00122556688999999999999999998
Q ss_pred CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-------CeE--EEEeecCCCCCceeeEEECCCC
Q 024185 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-------GEK--RCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-------~~~--~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
.+. ...++... ...|..+.++..|+.|++-+.|..|+.|+++. +++ .+++..--+..+-.+++|+.+|
T Consensus 185 ~e~--vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 185 LEC--VASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred hee--eeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 876 33333322 36789999999999999999999999999862 111 1222221122234568999999
Q ss_pred CEEEEecC-CCcEEEEEcCCceeEEEecCCc-ceeEEEEEecCCcEEEEeC-CeEEEEcCCCC
Q 024185 193 QYVVSGSG-DGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 252 (271)
Q Consensus 193 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~ 252 (271)
.|++.++. ...++||.-..|..++.+.|.. .....+.|+|-...+++-. |.+++|....-
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQV 324 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeecc
Confidence 99988775 4679999999999999998877 4567899999988888876 99999987543
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=8.6e-23 Score=173.89 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=181.9
Q ss_pred EEeeecceeeEEEEeecc--ceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE---
Q 024185 14 LLFARQNIILILLESLCG--IYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL--- 88 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--- 88 (271)
+.-+..||.+.+|+...- ......+..+..|++.|..+.|++....+ +|+|+.||.|.|||+.+-+.-..+
T Consensus 83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nl----LASGa~~geI~iWDlnn~~tP~~~~~~ 158 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNL----LASGADDGEILIWDLNKPETPFTPGSQ 158 (1049)
T ss_pred eeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCce----eeccCCCCcEEEeccCCcCCCCCCCCC
Confidence 344578999999998763 22334566688999999999999988843 889999999999999875543333
Q ss_pred -ecCCcceEEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecC---CeEEE
Q 024185 89 -RLRGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTN---NNIYV 162 (271)
Q Consensus 89 -~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d---~~i~~ 162 (271)
....+.+++|+..- ..|++++.+|.+.|||++..+. +..+...+....+..++|+|+. ..+++++.| -.|.+
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 22357789998754 5788889999999999998764 3333333333458899999975 456677664 46999
Q ss_pred EECCCC-eEEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEEE
Q 024185 163 LDAYGG-EKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVA 239 (271)
Q Consensus 163 ~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 239 (271)
||+|.- .+++.+..|... |.++.|++.+ +++++++.|+.|.+|+..+++.+..+.....++..+.|.|... .+++
T Consensus 237 WDlR~assP~k~~~~H~~G--ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 237 WDLRFASSPLKILEGHQRG--ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred ecccccCCchhhhcccccc--eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhh
Confidence 999864 456677778766 9999999976 8899999999999999999999999998889999999999776 5666
Q ss_pred eC--CeEEEEcCCCCC
Q 024185 240 AS--SVLSFWIPNPSS 253 (271)
Q Consensus 240 ~~--~~v~iw~~~~~~ 253 (271)
++ |.|.||.+.+..
T Consensus 315 asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 315 ASFDGKISIYSLQGTD 330 (1049)
T ss_pred heeccceeeeeeecCC
Confidence 66 999999998765
No 137
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.8e-20 Score=130.09 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=162.3
Q ss_pred cccccceEEeeEEecCCchhhhhhhhh-hccCceEEEEEecCcceeEEEecCCcceEE-EcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVL-LTTALEYGIFVLMLASFQGILRLRGRPTVA-FDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~i~i~d 118 (271)
|.-|.+.+..++|-.+...--.. +++ |..|..|++-|..+|+..+.+.+|....++ ++-++-.+++|++|.+|++||
T Consensus 132 ~nmhdgtirdl~fld~~~s~~~i-l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwd 210 (350)
T KOG0641|consen 132 FNMHDGTIRDLAFLDDPESGGAI-LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWD 210 (350)
T ss_pred eeecCCceeeeEEecCCCcCceE-EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEe
Confidence 66788999999996443211110 344 456888999999999999999999876644 355788999999999999999
Q ss_pred CCCCCCCcceEEEecCC-----ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 119 SRSYDKGPFDTFLVGGD-----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
++-... +....-..| ...|.+++..|.|++|++|-.|....+||++.+++++.+..|... |.++.|+|...
T Consensus 211 lrv~~~--v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad--ir~vrfsp~a~ 286 (350)
T KOG0641|consen 211 LRVNSC--VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD--IRCVRFSPGAH 286 (350)
T ss_pred eeccce--eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc--eeEEEeCCCce
Confidence 987654 212111112 256999999999999999999999999999999999999877766 99999999999
Q ss_pred EEEEecCCCcEEEEEcCC----ceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 194 YVVSGSGDGTLHAWNINT----RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
|+++++.|..|++-|+.. .-++.....|...+..+.|+|..--+++.+ .++.+|-++
T Consensus 287 yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 287 YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999863 122334567888889999999887777776 789999764
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.7e-21 Score=148.09 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=163.7
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--cceeEEEecC--CcceEEEcCCCC-EEEEEecCCeEEEEe
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--ASFQGILRLR--GRPTVAFDQQGL-VFAVAMEAGAIKLFD 118 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~d~~i~i~d 118 (271)
..+.++++.|+|..+. +++++.||+++||.++. ...++.+... .+.+.+|.|+|. .+++++.....+.||
T Consensus 212 s~~~I~sv~FHp~~pl-----llvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPL-----LLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CcCCceEEEecCCCce-----EEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 4568999999999998 88999999999998853 3344554433 466699999998 899999999999999
Q ss_pred CCCCCCCcceEEEecCCc-cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDT-AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
+++.+. .+...+.++. ..+..+..+|++++|+..+..|.|.+....+++.+..++.... +..++|+.||+.|++
T Consensus 287 le~ak~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 287 LETAKV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---VSDFTFSSDSKELLA 361 (514)
T ss_pred cccccc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---EeeEEEecCCcEEEE
Confidence 998875 2233333443 4577889999999999999999999999999999988876544 899999999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcc-eeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
++.+|.|.+||++...+++.+....+ .=++++.|+++.+||+|| |-|.|||.++
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 99999999999999999998864322 225677789999999999 8899999765
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=1.6e-19 Score=142.05 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=182.2
Q ss_pred EEEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEccc-ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec
Q 024185 2 VLIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFFAT-SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM 80 (271)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~ 80 (271)
|+.+--+|....+++....+.+..++...+..... ...|+. .+..|.|+.|.++|+ +++|..+|.|.||+..
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~engd------viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENGD------VITGDSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCCC------EEeecCCceEEEEeCC
Confidence 45556678889999999899999997766644433 333443 446889999999999 5699999999999998
Q ss_pred CcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC---------Ccce---------------------
Q 024185 81 LASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK---------GPFD--------------------- 128 (271)
Q Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~--------------------- 128 (271)
+.+..+....|. +.+++.-.+|.+|- |+.|..|..||-.-.+. ++..
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 887776666664 66788888888555 99999999999322111 0000
Q ss_pred ------EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC
Q 024185 129 ------TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG 202 (271)
Q Consensus 129 ------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 202 (271)
.....+|......++.+|+.+++++++.|+.+++|+ ..++..+..... + +.++.|+|.| .++.|+..|
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d-~--~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED-P--AECADFHPSG-VVAVGTATG 428 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC-c--eeEeeccCcc-eEEEeeccc
Confidence 112234667778899999999999999999999999 455555444332 2 7889999999 899999999
Q ss_pred cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 203 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
...+.|..+...+..-.. ..+++.++|+|+|.+||.|+ +.|++|.+...
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 999999998666665554 88999999999999999999 77999988654
No 140
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=8.4e-21 Score=145.01 Aligned_cols=204 Identities=11% Similarity=0.123 Sum_probs=164.5
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc-------ceeEEEecCC--cceEEEcCCC-CEEEEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-------SFQGILRLRG--RPTVAFDQQG-LVFAVA 108 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~--~~~~~~~~~~-~~l~~~ 108 (271)
-.+.+|++.+..+.|+|..+.. +|||+.|.+|.+|++..+ +++..+.+|. +..++|+|.- +.|+++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~v----IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCV----IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCccCccccccccccCccCCce----eecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 3478999999999999988875 679999999999998654 3566778886 4459999965 688899
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
+.|..|.+|++.+++. ...+. |.+.|.++.|+.||.+|++++.|..|++||.++++.+..-..|.+. .-..+.|
T Consensus 151 g~Dn~v~iWnv~tgea----li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~-k~~Raif 224 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEA----LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA-KPARAIF 224 (472)
T ss_pred cCCceEEEEeccCCce----eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC-CcceeEE
Confidence 9999999999999986 66665 9999999999999999999999999999999999999887777664 3445678
Q ss_pred CCCCCEEEEec---CCCcEEEEEcCCcee---EEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCC
Q 024185 189 TPDGQYVVSGS---GDGTLHAWNINTRNE---VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSS 253 (271)
Q Consensus 189 ~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~ 253 (271)
-.+|..+-+|. .+..+-+||..+.+. .+++... ..|.-.-|.||..++..++ +.|+.|.+....
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 78888555553 367899999765433 4455543 3466666788988888776 669999998766
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.1e-21 Score=148.52 Aligned_cols=204 Identities=13% Similarity=0.175 Sum_probs=156.3
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCC-CEEEEEecCCeEEEEe
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQG-LVFAVAMEAGAIKLFD 118 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~-~~l~~~~~d~~i~i~d 118 (271)
.+|+.++-.++|+..-+.+ ||||+.|.+|++||+.++++..++..| .+.+++|+|.. .+|++|+.|++|.+.|
T Consensus 240 ~gHTdavl~Ls~n~~~~nV----LaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNV----LASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred ccchHHHHHHHhcccccee----EEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 3677778888888777665 789999999999999999999999766 46779999964 7899999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCC-CEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDG-QYV 195 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l 195 (271)
.+..... -..+.+ .+.|-.++|.|.. ..++++..||+++-+|+|+. +++.+++.|..+ |.++++++.- .++
T Consensus 316 ~R~~~~s-~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~--ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 316 CRDPSNS-GKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE--ISGLSVNIQTPGLL 389 (463)
T ss_pred ccCcccc-CceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC--cceEEecCCCCcce
Confidence 9853321 113333 3679999999954 45677788999999999975 889999999987 9999998764 467
Q ss_pred EEecCCCcEEEEEcCCcee--EEEecCCcceeEEEEEecCCcE-EEEeC--CeEEEEcCCCCCCC
Q 024185 196 VSGSGDGTLHAWNINTRNE--VACWNGNIGVVACLKWAPRRAM-FVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~-l~~~~--~~v~iw~~~~~~~~ 255 (271)
++++.|+.+++|++..-.. +..-.-.-+...|.++.|+-.. ++.|+ +.+++||+.+....
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 8899999999999864333 2221111234567778887654 45555 55999999876543
No 142
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=140.45 Aligned_cols=188 Identities=15% Similarity=0.188 Sum_probs=146.6
Q ss_pred hhhhccCceEEEEEecCc------------ceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe
Q 024185 65 LVLLTTALEYGIFVLMLA------------SFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV 132 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 132 (271)
++.|+....|.-+++... .++..++.|....-++.-++.++++|+.|.+|+|||++.... ...+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q----lg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ----LGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhh----hcce
Confidence 445555555555544311 123344566544444444799999999999999999998765 5556
Q ss_pred cCCccceEEEEEcCCCc--EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 133 GGDTAEVCDIKFSNDGK--SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 133 ~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
-.|.+.|+++.|.++-. .|++|+.||.|.+|+....+.+..++.|.+. |+.++.+|.+++.++.+.|+.++.||+-
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecCCCceEEEEcCCceeeeehhh
Confidence 67999999999999765 8999999999999999999999999999987 9999999999999999999999999999
Q ss_pred CceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCCC
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~~ 259 (271)
+|+.-..+.-. ..-+.+.|+|.|.+++.++ +.|-+|.+++..+..+.+
T Consensus 158 ~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~ 206 (362)
T KOG0294|consen 158 RGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE 206 (362)
T ss_pred cCccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh
Confidence 88876555321 1224589999999777776 889999988876655544
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2e-19 Score=133.46 Aligned_cols=203 Identities=11% Similarity=0.192 Sum_probs=153.2
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc----ceeEEEecCCc--ceEEEcC--CCCEEEEEecCC
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA----SFQGILRLRGR--PTVAFDQ--QGLVFAVAMEAG 112 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~--~~~~~~~--~~~~l~~~~~d~ 112 (271)
-.+|.+-+.++.|.+-|+. +|+|+.|++++|||.++. .+....+.|+. ..+.|.+ =|+.+|+++.|+
T Consensus 9 ~s~h~DlihdVs~D~~GRR-----mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRR-----MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred ccCCcceeeeeeecccCce-----eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 3568889999999999999 899999999999997543 34455566654 4477754 378999999999
Q ss_pred eEEEEeCCCC-----CCCcceEEEecCCccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCeE---------------
Q 024185 113 AIKLFDSRSY-----DKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGEK--------------- 170 (271)
Q Consensus 113 ~i~i~d~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~--------------- 170 (271)
++.||.-... .........+......|++++|.|. |-.+++++.||.++||+..+.-.
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999975321 1123445566777889999999994 67789999999999998642100
Q ss_pred ----------------------------------------------------EEEeecCCCCCceeeEEECCC----CCE
Q 024185 171 ----------------------------------------------------RCGFSLEPSPNTNTEATFTPD----GQY 194 (271)
Q Consensus 171 ----------------------------------------------------~~~~~~~~~~~~v~~~~~~~~----~~~ 194 (271)
+.++..+ ...|+.++|.|+ -..
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~--~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH--TDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC--CCcceeeeeccccCCceee
Confidence 0001111 235899999997 247
Q ss_pred EEEecCCCcEEEEEcCCc--------------------eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 195 VVSGSGDGTLHAWNINTR--------------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+|+++.|| |+||.++.. +.+..+.+|++.|..+.|.-.|..|++.+ |.||+|...-
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 89999999 999998731 12445688999999999999999999887 9999998644
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=2.6e-20 Score=144.69 Aligned_cols=243 Identities=11% Similarity=0.082 Sum_probs=177.4
Q ss_pred eeecce-eE-EeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 7 ALPITQ-AL-LFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 7 ~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
-+|... ++ +.|...|++-.|+......+...+-.|..|.+.|.++.|+|...-. +++.+.||+|++-|++++..
T Consensus 194 fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~----i~ssSyDGtiR~~D~~~~i~ 269 (498)
T KOG4328|consen 194 FHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ----IYSSSYDGTIRLQDFEGNIS 269 (498)
T ss_pred ecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh----eeeeccCceeeeeeecchhh
Confidence 345544 44 4455678999998854444445567789999999999999988764 56999999999999987754
Q ss_pred eEEEec--CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCe
Q 024185 85 QGILRL--RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNN 159 (271)
Q Consensus 85 ~~~~~~--~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~ 159 (271)
...+.. .. ...+.|+.+...++.+..=|...+||.+++... ...+.-|...|+.++++| ...+|++++.|++
T Consensus 270 e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~---~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 270 EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE---YENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc---chhhhhhhcccceeecCCCCchheeecccCcc
Confidence 333333 32 233788888888888877789999999987641 223445778999999999 4567899999999
Q ss_pred EEEEECCCCeEEEE--eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC----CceeEEEecCCc----c--eeEE
Q 024185 160 IYVLDAYGGEKRCG--FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN----TRNEVACWNGNI----G--VVAC 227 (271)
Q Consensus 160 i~~~d~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~----~--~v~~ 227 (271)
++|||++.-..... +..-.+...|.+..|||++-.|++.+.|..|+|||.. .-.+..++. |. . ....
T Consensus 347 ~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fK 425 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFK 425 (498)
T ss_pred eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchh
Confidence 99999986432221 2222222349999999998889999999999999983 233333332 22 1 2346
Q ss_pred EEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 228 LKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 228 ~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
..|.|+..++++|. ..|-|+|.+.++...+
T Consensus 426 A~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred heeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 68999999999997 7799999999885444
No 145
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=2.1e-20 Score=150.98 Aligned_cols=124 Identities=15% Similarity=0.292 Sum_probs=106.5
Q ss_pred cceEEEEEcC-CCcEEEEEecCCeEEEEECCCC-------eEEEEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEE
Q 024185 137 AEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGG-------EKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAW 207 (271)
Q Consensus 137 ~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 207 (271)
..|+++.|.| |...|++++.||.|++|.+..+ ++...+..|... |+++.|+|- ...|++++.|-+|++|
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce--EEEEEecchhhhHhhhhhccceeeee
Confidence 4588899999 8889999999999999998653 334556777766 999999996 4578899999999999
Q ss_pred EcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCCCC
Q 024185 208 NINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDESTDP 262 (271)
Q Consensus 208 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~~~ 262 (271)
|+++++....+.+|.+.|.+++|||+|+.+++.+ |++++|+.++++..-.+...|
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp 762 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP 762 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC
Confidence 9999999999999999999999999999999998 899999999887665554444
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=1e-18 Score=137.67 Aligned_cols=219 Identities=11% Similarity=0.104 Sum_probs=163.6
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--c-----
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA--S----- 83 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~----- 83 (271)
+..++-+-++|.+.+|..-.. ...+....|++.|.++..-.+|. |+||+.|+.|..||-.-. +
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~----~~~k~~~aH~ggv~~L~~lr~Gt------llSGgKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTN----RISKQVHAHDGGVFSLCMLRDGT------LLSGGKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred CCCEEeecCCceEEEEeCCCc----eEEeEeeecCCceEEEEEecCcc------EeecCccceEEeccccccccccccCc
Confidence 355667778899988887443 22222338999999999999999 457999999999983210 0
Q ss_pred ----eeE-----------------------------EEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce
Q 024185 84 ----FQG-----------------------------ILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD 128 (271)
Q Consensus 84 ----~~~-----------------------------~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 128 (271)
.++ ...+| +.+.++.+|+.+.+++++.|+.+++|+ ..+.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~---- 400 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL---- 400 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce----
Confidence 000 01222 234588899999999999999999999 3332
Q ss_pred EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 129 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 129 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
.+.. --..++.|+.|+|.| .+|.|...|...+.|.++...+..-.. . .+++.+.|+|+|.+||.|+.|+.|++|-
T Consensus 401 ~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~--~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 401 EWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N--EQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred eEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C--CceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 2221 124789999999999 899999999999999988655544333 3 4499999999999999999999999999
Q ss_pred cCCcee-EEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 209 INTRNE-VACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 209 ~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
+..+.. .... ..+.++|+.+.||+|++++.+-+ -.|..|...
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 876443 3333 33458999999999999999998 348899443
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.2e-20 Score=142.96 Aligned_cols=183 Identities=14% Similarity=0.174 Sum_probs=141.3
Q ss_pred hhhhccCceEEEEEecCcc---eeEEE------------------ecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCC
Q 024185 65 LVLLTTALEYGIFVLMLAS---FQGIL------------------RLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSR 120 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~---~~~~~------------------~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~ 120 (271)
+|.|+.|..|.|||+.-.. +..++ .+|. +-.++|+.+- +.||+|+.|.+|++||+.
T Consensus 195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~ 274 (463)
T KOG0270|consen 195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD 274 (463)
T ss_pred EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcC
Confidence 7899999999999985211 11111 1232 2236666543 589999999999999999
Q ss_pred CCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeE-EEEeecCCCCCceeeEEECCCCC-EEEE
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQ-YVVS 197 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 197 (271)
+++. ...+..|.+.|.+++|+| ....|++|+.|+++.+.|.|.... -..++.. +.|..++|.|... .+++
T Consensus 275 ~g~p----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 275 TGKP----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPHSENSFFV 347 (463)
T ss_pred CCCc----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCCCceeEEE
Confidence 9997 666778999999999999 577899999999999999985222 1223222 2388899998754 5667
Q ss_pred ecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCCc-EEEEeC--CeEEEEcCCCCCC
Q 024185 198 GSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRRA-MFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~v~iw~~~~~~~ 254 (271)
+..||+++-+|+|+. +++.++.+|.++|.++++++.-. ++++++ +.+++|++.....
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 788999999999975 89999999999999999998654 667776 8899999977554
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=134.31 Aligned_cols=189 Identities=15% Similarity=0.261 Sum_probs=147.7
Q ss_pred cCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-------CcceEEEcCCCCEEEEEecCCeEEEEeCC-CCCCCc
Q 024185 55 ACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-------GRPTVAFDQQGLVFAVAMEAGAIKLFDSR-SYDKGP 126 (271)
Q Consensus 55 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~ 126 (271)
|+..+ +++.+.+.-|++||.-+|+....++.- ...+++|+|||..|++|. +..|+++|+. .+...+
T Consensus 121 P~t~l-----~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 121 PSTNL-----FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred Cccce-----eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCc
Confidence 55555 788899999999999999988888653 234599999999998876 6799999994 333211
Q ss_pred ceEEE---ecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-C
Q 024185 127 FDTFL---VGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-D 201 (271)
Q Consensus 127 ~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 201 (271)
..... -.+..+-+.|++|+| +.+.++.++...++-||.-..++++..+.+|.+. |+.++|+++|+.|++|.. |
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG--vThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG--VTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC--eeeEEeccCcCeecccccCC
Confidence 11111 112356789999999 5668999999989999988888888888877766 999999999999999987 6
Q ss_pred CcEEEEEcCC-ceeEEEecCCcc-eeEEE--EEecCCcEEEEeC--CeEEEEcCCC
Q 024185 202 GTLHAWNINT-RNEVACWNGNIG-VVACL--KWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 202 g~i~iwd~~~-~~~~~~~~~~~~-~v~~~--~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
..|..||++. +.++..+..|.+ .=..+ ...|++++|++|+ |.|++||+++
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 7899999985 556677766654 22333 4578899999997 9999999987
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=2.3e-20 Score=139.47 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=165.5
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe---c
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR---L 90 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~ 90 (271)
++.+..-|.+..++...+ .....+.+|.+.|+.+.+.|....+ +++++.|..|++||+++..++..+- +
T Consensus 108 la~~G~~GvIrVid~~~~----~~~~~~~ghG~sINeik~~p~~~ql----vls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSG----QCSKNYRGHGGSINEIKFHPDRPQL----VLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred EEeecceeEEEEEecchh----hhccceeccCccchhhhcCCCCCcE----EEEecCCceEEEEeccCCeEEEEeccccc
Confidence 344445677778887777 4556689999999999999998664 6799999999999999999999884 4
Q ss_pred CC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC----------------C-------cceEE-EecCCccceEEEEE
Q 024185 91 RG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK----------------G-------PFDTF-LVGGDTAEVCDIKF 144 (271)
Q Consensus 91 ~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------~-------~~~~~-~~~~~~~~v~~~~~ 144 (271)
|. +.++.|+++|.+|++++.|.++++|++...+. . ++..+ +..-|...|.|+.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 53 56699999999999999999999999984221 0 01111 12346667777777
Q ss_pred cCCCcEEEEEecCCeEEEEECC-CCe-------------EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 145 SNDGKSMLLTTTNNNIYVLDAY-GGE-------------KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 145 s~~~~~l~~~~~d~~i~~~d~~-~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
- |+++++-+.++.|..|... -++ .+..+.......+....+|+|-++.|+.|...|.+.+||++
T Consensus 260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD 337 (385)
T ss_pred H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence 6 4788888889999999761 111 12233333333334446677889999999999999999999
Q ss_pred CceeEE--Eec--CCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 211 TRNEVA--CWN--GNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 211 ~~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
..++.. ++. .....|...+|+.||.+|+..+ +.|--||.
T Consensus 338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 876632 222 2245799999999999877766 66776764
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=7e-20 Score=143.94 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=153.9
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 126 (271)
.|++......+ +++|+..+.|+|||++...+.+.+++|. +.++.++....+||+++..|.|.+..+.++..
T Consensus 83 ~Cv~~~s~S~y-----~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-- 155 (673)
T KOG4378|consen 83 FCVACASQSLY-----EISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-- 155 (673)
T ss_pred HHHhhhhccee-----eeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--
Confidence 34444444455 7899999999999999777777788875 66789999999999999999999999988775
Q ss_pred ceEEEecC-CccceEEEEEcCCCcE-EEEEecCCeEEEEECCCCeEEEEe-ecCCCCCceeeEEECCCC-CEEEEecCCC
Q 024185 127 FDTFLVGG-DTAEVCDIKFSNDGKS-MLLTTTNNNIYVLDAYGGEKRCGF-SLEPSPNTNTEATFTPDG-QYVVSGSGDG 202 (271)
Q Consensus 127 ~~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 202 (271)
...+.- ....|+-+.|+|..+. |.+++.+|.|.+||+....+...+ ..|..+ ...++|+|.. .++++.+.|.
T Consensus 156 --tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP--~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 156 --TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP--CRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred --ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC--cCcceecCCccceEEEecccc
Confidence 333322 2356778999997665 457788999999999876666553 445554 7789999965 5778899999
Q ss_pred cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 203 TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 203 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
.|.+||.+..+....+. ...+.+.++|+++|.+|+.|+ |.|..||++..+.
T Consensus 232 ki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 99999999877777664 456789999999999999997 9999999987653
No 151
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.5e-20 Score=147.41 Aligned_cols=214 Identities=12% Similarity=0.165 Sum_probs=171.6
Q ss_pred EcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--------cceeEEEecCCcc--eEEEcCCCCEEEEEe
Q 024185 40 FFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--------ASFQGILRLRGRP--TVAFDQQGLVFAVAM 109 (271)
Q Consensus 40 ~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ 109 (271)
.+..|...+..+.+.|.... |++++.||++++|+++. -+++.+|.+|..+ |+++.+++..+++|+
T Consensus 289 tl~s~~d~ir~l~~~~sep~-----lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPV-----LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred eeecchhhhhhhhcCCCCCe-----EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 46678888888999998888 89999999999999932 2467788898755 588899999999999
Q ss_pred cCCeEEEEeCCCCC------CCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC------
Q 024185 110 EAGAIKLFDSRSYD------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE------ 177 (271)
Q Consensus 110 ~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------ 177 (271)
.||+|+.|++.... -.....-.+.||.+.+..+++|+....|++++.||++++|+.....+ .++...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 99999999665211 01122345779999999999999999999999999999998654332 111100
Q ss_pred ---------------------------------------C--CC---CceeeEEECCCCCEEEEecCCCcEEEEEcCCce
Q 024185 178 ---------------------------------------P--SP---NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 178 ---------------------------------------~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 213 (271)
. .+ ..+..+.++|...+.+++..|+.|+++|..+++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 0 00 235557788888899999999999999999999
Q ss_pred eEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 214 EVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 214 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+++....|...++++++.|+|.+|++++ +.+++|.+....+..+..
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 9999999999999999999999999998 889999997766655443
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.9e-21 Score=163.94 Aligned_cols=211 Identities=12% Similarity=0.176 Sum_probs=163.2
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC---cc---eeEEEecCC--cceEEEcCCCC-EEEEEecCCeEE
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML---AS---FQGILRLRG--RPTVAFDQQGL-VFAVAMEAGAIK 115 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~--~~~~~~~~~~~-~l~~~~~d~~i~ 115 (271)
..+.+.++|.+.+..--.. ++.|.+||.|.+||... +. .+.+...|. +..+.|++... .||+|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~Gl-IaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGL-IAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccce-eeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 4567789998877652221 67889999999999865 22 344455554 45599999765 999999999999
Q ss_pred EEeCCCCCCCcceEEEe--cCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC
Q 024185 116 LFDSRSYDKGPFDTFLV--GGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
|||+.+.+. .+.. ....+.|.+++|+.. ...|++++.+|++.+||++..+.+-.+..+.....+..+.|+|+.
T Consensus 143 iWDlnn~~t----P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 143 IWDLNKPET----PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred EeccCCcCC----CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 999998664 2222 224578999999984 556788889999999999999888777766665668889999985
Q ss_pred -CEEEEecCC---CcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 193 -QYVVSGSGD---GTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 193 -~~l~~~~~d---g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
..++++++| -.|.+||++. ..+++.+++|...|.+++|++.+ ++|++++ +.+.+|+.++++.+.+..+
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 356666554 3699999986 44567788999999999999966 7788877 8899999999988877654
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1e-19 Score=146.72 Aligned_cols=240 Identities=14% Similarity=0.164 Sum_probs=169.1
Q ss_pred ecceeEE-eeecceeeEEEEeecccee--eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 9 PITQALL-FARQNIILILLESLCGIYQ--CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 9 ~~~~~l~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
|..+++| ++.++|.+.+++....... +..+..+..|.++|..+.|.|.... |++++.|.++++||+++.+..
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~-----lVsasGDsT~r~Wdvk~s~l~ 135 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESL-----LVSASGDSTIRPWDVKTSRLV 135 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCcee-----EEEccCCceeeeeeeccceee
Confidence 3344444 4567899999887665433 2234667889999999999995555 889999999999999998877
Q ss_pred EE--EecCC--cceEEEcCCC-CEEEEEecCCeEEEEeCCCCCC---------------C---cce-----EEEecCCcc
Q 024185 86 GI--LRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDSRSYDK---------------G---PFD-----TFLVGGDTA 137 (271)
Q Consensus 86 ~~--~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~---------------~---~~~-----~~~~~~~~~ 137 (271)
.. +.+|. +..++|.|.. ..|++|+.||.|.|||++.... . +.. ...-.++..
T Consensus 136 G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ 215 (720)
T KOG0321|consen 136 GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN 215 (720)
T ss_pred cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC
Confidence 66 67775 5569999965 5889999999999999875331 0 000 111122334
Q ss_pred ceEE---EEEcCCCcEEEEEec-CCeEEEEECCCCeEEEE------eecCCC---CCceeeEEECCCCCEEEEecCCCcE
Q 024185 138 EVCD---IKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCG------FSLEPS---PNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 138 ~v~~---~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~------~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
.|.+ +.+..|...||+++. |+.|++||++....... ...+.. ...+.++..+..|.+|++.+.|+.|
T Consensus 216 ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 216 TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 4555 566778888999887 99999999987543222 111111 2347778888889999988889999
Q ss_pred EEEEcCCce--eEEEecCCcce--eEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 205 HAWNINTRN--EVACWNGNIGV--VACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 205 ~iwd~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+.|++.+-. ++..+.++... -..-..+||+.++++|+ ....+|.+.+-.
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 999998633 34444443221 11224689999999998 779999987754
No 154
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.4e-20 Score=137.11 Aligned_cols=227 Identities=11% Similarity=0.162 Sum_probs=160.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecC-CchhhhhhhhhhccCceEEEEEecCcceeEEE--
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLASFQGIL-- 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 88 (271)
..++++++++.+..++..++ ..++.|.++...++.+.|..+ +... +.+++.||+|++||++.......+
T Consensus 41 ~~vav~lSngsv~lyd~~tg----~~l~~fk~~~~~~N~vrf~~~ds~h~----v~s~ssDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG----QLLEEFKGPPATTNGVRFISCDSPHG----VISCSSDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccch----hhhheecCCCCcccceEEecCCCCCe----eEEeccCCeEEEEEeecchhhhheec
Confidence 45888899999999999887 566679999999999998774 3332 669999999999999987655444
Q ss_pred ecCC-c--ceEEEcCCCCEEEEEe----cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeE
Q 024185 89 RLRG-R--PTVAFDQQGLVFAVAM----EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNI 160 (271)
Q Consensus 89 ~~~~-~--~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i 160 (271)
..+. . .+++.+..++.+++|. .+-.|.+||++..+. + ...-...|.+.|++++|+| +.+.|++||.||-+
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-L-LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-h-hhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 3333 2 2355555777888874 356899999998764 1 1223467999999999999 67889999999999
Q ss_pred EEEECCCCeE----EEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeE--------------------
Q 024185 161 YVLDAYGGEK----RCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEV-------------------- 215 (271)
Q Consensus 161 ~~~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-------------------- 215 (271)
.+||+..... +.+++ +. ..|.++.|..++ +.+.+-+..++..+|++..+.+.
T Consensus 191 nlfD~~~d~EeDaL~~viN-~~--sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVIN-HG--SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred EeeecCCCcchhhHHHhhc-cc--ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence 9999865421 22222 22 237777777665 34666666677777776543321
Q ss_pred -----------------------------------------EEecC-CcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 216 -----------------------------------------ACWNG-NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 216 -----------------------------------------~~~~~-~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
..+.+ |..-|+++.|...+.++.+|+ |.+.+|..+.
T Consensus 268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 11222 445566777777788999998 8899998533
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-19 Score=142.17 Aligned_cols=202 Identities=13% Similarity=0.197 Sum_probs=164.0
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC---Ccc
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR---GRP 94 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~ 94 (271)
..++.+.+|+.... ...+.+++|+..|.++.++-...+ +|+++..|.|.+..+.++.....|... .+.
T Consensus 98 G~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~Dey-----iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEY-----IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred CcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcce-----eEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 34566666665544 455678999999999999999998 899999999999999998877777544 345
Q ss_pred eEEEcCCCCE-EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEE
Q 024185 95 TVAFDQQGLV-FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 95 ~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
.+.++|..+. |.+++++|.|.+||+..... + ......|..+...++|+|. ..+|++.+.|..|.+||.+..+...
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~-~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--I-FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCc--c-cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 5899998874 56779999999999987664 2 2234679999999999994 5567788999999999999777666
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
.+.. ..+ ...++|+++|.+|+.|+..|.|..||++. ..++..+..|...|++++|-|..
T Consensus 246 ~l~y-~~P--lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 246 RLTY-SHP--LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeee-cCC--cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 6553 333 78899999999999999999999999986 55678888999999999998765
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=3.5e-19 Score=143.71 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=166.8
Q ss_pred eeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-------
Q 024185 12 QALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS------- 83 (271)
Q Consensus 12 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 83 (271)
+.+++. ..+..+..|+...+.... .+.+-+|.+.+.+++|.|....+ |++|+.||.+.|||++-..
T Consensus 112 e~~lVsasGDsT~r~Wdvk~s~l~G--~~~~~GH~~SvkS~cf~~~n~~v----F~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 112 ESLLVSASGDSTIRPWDVKTSRLVG--GRLNLGHTGSVKSECFMPTNPAV----FCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred ceeEEEccCCceeeeeeeccceeec--ceeecccccccchhhhccCCCcc----eeeccCCCcEEEEEEeccchhhHHHH
Confidence 334444 556778888887763322 23588999999999999999876 6699999999999985321
Q ss_pred -------------eeEEE-------ecCC--cce---EEEcCCCCEEEEEec-CCeEEEEeCCCCCC----CcceEEEec
Q 024185 84 -------------FQGIL-------RLRG--RPT---VAFDQQGLVFAVAME-AGAIKLFDSRSYDK----GPFDTFLVG 133 (271)
Q Consensus 84 -------------~~~~~-------~~~~--~~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~----~~~~~~~~~ 133 (271)
+.+.+ ..+. +.. +-+..|+..||+++. |+.|++||++.... ++.....+.
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred hhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 00000 1111 112 455678899999877 99999999987543 222233333
Q ss_pred CC---ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe--EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 134 GD---TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE--KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 134 ~~---~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
-| .-.+.++.....|.+|++.+.|+.|++||+.+.. ++..+.++.....-..-..+||+.++++|+.|...++|.
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 33 3457777777788999988889999999997643 333444443333333456789999999999999999999
Q ss_pred cCCcee-EEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCC
Q 024185 209 INTRNE-VACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 209 ~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+.+.+. ...+.+|...|++++|.|.. .-+++++ ..+++|++..+-.
T Consensus 346 vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred ecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 987654 45668999999999998842 2355556 6799999966543
No 157
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-19 Score=138.09 Aligned_cols=195 Identities=10% Similarity=0.037 Sum_probs=145.2
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 126 (271)
.+++++++|.. +++++.||++|+|++.+...+.....| ++..+.|+|||++|++-+.| ..++|+.+++..
T Consensus 148 k~vaf~~~gs~-----latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSK-----LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-- 219 (398)
T ss_pred eEEEEcCCCCE-----eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch--
Confidence 67899999998 899999999999998777766665544 46779999999999999988 899999998843
Q ss_pred ceEEEecCCccceEEEEEcCCC---cEEE--EEecCCeEEEEECCCCeE---EEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 127 FDTFLVGGDTAEVCDIKFSNDG---KSML--LTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 127 ~~~~~~~~~~~~v~~~~~s~~~---~~l~--~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
+..............+.|+.|+ .+++ ....-+.|..||+...+. ++..+.-.....+.+++.++||++++.|
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 2222222334456778888877 3333 334456677776643221 1111111111249999999999999999
Q ss_pred cCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 199 SGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+.||.|-|++..+.+.++-. +.|...|+.+.|+||.+++++.+ ....+..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999988887755 67999999999999999998876 5566666544
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2.3e-19 Score=139.45 Aligned_cols=206 Identities=12% Similarity=0.138 Sum_probs=159.0
Q ss_pred EEEEcccccceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEecCc----ceeEEEecCC--cceEEEcCCC-CEEEEE
Q 024185 37 IIEFFATSKGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVLMLA----SFQGILRLRG--RPTVAFDQQG-LVFAVA 108 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~--~~~~~~~~~~-~~l~~~ 108 (271)
....++.+.+++.+++|+|... .+ +++|+.-|+|-+||+.+. ..+..+..|+ +.++.|+|.. ..+++.
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~l----va~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKL----VAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ecceeEecccceEEEEecccCcceE----EEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3445667889999999999887 43 669999999999999532 2344555664 5669999965 689999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE-EEEeecCCCCCceeeEE
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~ 187 (271)
+.||+|+.-|+++..... ...+......+..+.|+.+...++++..=|...+||++++.. ...+..|... |.+++
T Consensus 254 SyDGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK--I~sv~ 329 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK--ITSVA 329 (498)
T ss_pred ccCceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc--cceee
Confidence 999999999998765421 333333456788899999888888888877999999998765 4445566654 99999
Q ss_pred ECCCC-CEEEEecCCCcEEEEEcCCcee----EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 188 FTPDG-QYVVSGSGDGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 188 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
++|-. .++++++.|++.+|||++.-.. +.....|...|.+..|||.+-.|++.+ +.|+|||..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99975 4788999999999999986322 223346899999999999876688777 889999983
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=6.2e-19 Score=143.46 Aligned_cols=210 Identities=15% Similarity=0.140 Sum_probs=155.9
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+-+|...+.+++.+|+++.++..|=.+--....|++|+..+-..++.+.+|. ++.++||||+++|++.+.|.++.+|.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 4578899999999999999333222222234579999999888888899997 45599999999999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--eEEEEeecCCCCCceeeEEECCC-----
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRCGFSLEPSPNTNTEATFTPD----- 191 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~----- 191 (271)
........+.....+.|..-|.+..|+|++++++++|+|.+|++|..... +.+..+........|+.+++.|-
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~ 680 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEK 680 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccc
Confidence 86654322333337789999999999999999999999999999998776 44443322233345888888763
Q ss_pred CCEEEEecCCCcEEEEEcCC-------cee-----EEEecCCcceeEEEEEecC----------CcEEEEeC--CeEEEE
Q 024185 192 GQYVVSGSGDGTLHAWNINT-------RNE-----VACWNGNIGVVACLKWAPR----------RAMFVAAS--SVLSFW 247 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~-------~~~-----~~~~~~~~~~v~~~~~s~~----------~~~l~~~~--~~v~iw 247 (271)
+..++.|-+.|.|.+|.... +.. .....+|...|+.+.|.|- ...|++|+ .+++++
T Consensus 681 ~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~ 760 (764)
T KOG1063|consen 681 GDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIF 760 (764)
T ss_pred cceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEe
Confidence 23678888899999998651 111 1112356778999999975 12457776 679998
Q ss_pred cCC
Q 024185 248 IPN 250 (271)
Q Consensus 248 ~~~ 250 (271)
+..
T Consensus 761 nv~ 763 (764)
T KOG1063|consen 761 NVD 763 (764)
T ss_pred ecc
Confidence 764
No 160
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=9.6e-18 Score=127.40 Aligned_cols=183 Identities=13% Similarity=0.237 Sum_probs=145.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec-CCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG-GDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~ 142 (271)
+++...-+.+++.+.+.+..+..+... ++-++.+ +-++|+++-.+ .|+|||+++.+. +...... .+...+.++
T Consensus 61 iV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm--Nr~RLvV~Lee-~IyIydI~~Mkl--LhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 61 IVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRM--NRKRLVVCLEE-SIYIYDIKDMKL--LHTIETTPPNPKGLCAL 135 (391)
T ss_pred EEecCCCceEEEEEcccCceEEEEecCCceEEEEE--ccceEEEEEcc-cEEEEeccccee--ehhhhccCCCccceEee
Confidence 445544567889999888877766544 4555555 45567777654 499999999876 3333322 456668888
Q ss_pred EEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCc-EEEEEcCCceeEEEec
Q 024185 143 KFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWN 219 (271)
Q Consensus 143 ~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~ 219 (271)
+.++++.+++.-+. .|.|.+||+.+-+.+..+..|.++ +.+++|+|+|.+||++++.|+ |+++.+.+|+.+++|+
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~--lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP--LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc--eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 88888889987643 789999999999999999999887 999999999999999999886 8999999999999986
Q ss_pred CC--cceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 220 GN--IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 220 ~~--~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
.. ...|.+++|+|++.+|++.| ++|++|.++....
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~ 252 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN 252 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc
Confidence 43 24688999999999999887 8899999987663
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.2e-17 Score=136.07 Aligned_cols=229 Identities=11% Similarity=0.120 Sum_probs=174.3
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-----
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----- 83 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----- 83 (271)
|..+.++++. +..+..++...| ..++.+++|++.|.+++++.+|+. |+||+.|..|.+|+.+-..
T Consensus 22 PDGsqL~lAA-g~rlliyD~ndG----~llqtLKgHKDtVycVAys~dGkr-----FASG~aDK~VI~W~~klEG~LkYS 91 (1081)
T KOG1538|consen 22 PDGTQLILAA-GSRLLVYDTSDG----TLLQPLKGHKDTVYCVAYAKDGKR-----FASGSADKSVIIWTSKLEGILKYS 91 (1081)
T ss_pred CCCceEEEec-CCEEEEEeCCCc----ccccccccccceEEEEEEccCCce-----eccCCCceeEEEecccccceeeec
Confidence 4445555555 667888888888 777889999999999999999999 9999999999999764211
Q ss_pred ---eeEEE---------------------------ecC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceE
Q 024185 84 ---FQGIL---------------------------RLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT 129 (271)
Q Consensus 84 ---~~~~~---------------------------~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 129 (271)
.++-. ..+ .+.+++|..||++++.|..||+|.+-+-...+. ...
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek--~~I 169 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK--VKI 169 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc--eEE
Confidence 11111 000 134589999999999999999999987654443 334
Q ss_pred EEecCCccceEEEEEcCCC-----cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 130 FLVGGDTAEVCDIKFSNDG-----KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 130 ~~~~~~~~~v~~~~~s~~~-----~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
....+...+|.+++|+|.. ..+++.....++.+|.+. |+.+..-..-.- ...|+.+.|+|.+++.|+.|+.+
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F--dP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF--DPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC--CchhheeccCCcEEEEccCCCce
Confidence 4456678899999999953 467777778888888875 443332111111 25678999999999999999999
Q ss_pred EEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 205 HAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 205 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
++|- +.|-.+.++.....+|+.++..|++.+++.|+ |++-.|++...+
T Consensus 247 ~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 247 SLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 9996 56777788877788999999999999999998 999999876544
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=8.1e-19 Score=129.26 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=158.8
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccC---ceEEEEEecCcc---------eeEE
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTA---LEYGIFVLMLAS---------FQGI 87 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~---------~~~~ 87 (271)
+.++.++....+. .....+.|.++.+.|..++-+|..+.+.+.+..-.+.. -.+.||.+.... ++..
T Consensus 39 dNqVhll~~d~e~-s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEG-SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCcc-chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 3455554443321 11233458889999999999998887655333322222 346789885432 2333
Q ss_pred Eec---CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE---ecCCccceEEEEEcC--CCcEEEEEecCCe
Q 024185 88 LRL---RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL---VGGDTAEVCDIKFSN--DGKSMLLTTTNNN 159 (271)
Q Consensus 88 ~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~s~--~~~~l~~~~~d~~ 159 (271)
+.. ..+.|+.|.|++..+++-. |..|.+|++...... ..... -.++....++-+|+| ||+.+++.+ |++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~t 194 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DST 194 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEeC-CCc
Confidence 331 2468899999999988876 788999999876641 11111 112456778889999 788777655 789
Q ss_pred EEEEECCCCeEEEEee-cCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC-c
Q 024185 160 IYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-A 235 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~ 235 (271)
+..||+|+.++...+. .|... +..+.|+|+.+ +|+++++||.|+|||.+. ..+++++.+|..+|+++.|+|.. .
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~--vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQR--VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred EEEEEccchhhhcchhhhhcce--eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence 9999999887666554 34443 88999999965 677899999999999985 55788999999999999999964 4
Q ss_pred EEEEeC--CeEEEEcCCC
Q 024185 236 MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 236 ~l~~~~--~~v~iw~~~~ 251 (271)
++++++ ..|.+|....
T Consensus 273 LiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEEecCCCceeEEEeccc
Confidence 666666 6688998754
No 163
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=3.9e-19 Score=141.06 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=156.3
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE--e
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL--R 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~ 89 (271)
+.+++..++|.+..++..... .+....|.+++.+-.|+|+|.. |+++++||.|++|.- +|-...++ .
T Consensus 76 d~~~i~s~DGkf~il~k~~rV-----E~sv~AH~~A~~~gRW~~dGtg-----Llt~GEDG~iKiWSr-sGMLRStl~Q~ 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV-----ERSISAHAAAISSGRWSPDGAG-----LLTAGEDGVIKIWSR-SGMLRSTVVQN 144 (737)
T ss_pred ceEEEEcCCceEEEecccchh-----hhhhhhhhhhhhhcccCCCCce-----eeeecCCceEEEEec-cchHHHHHhhc
Confidence 457778888988888765442 2347889999999999999998 899999999999976 45443333 2
Q ss_pred cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 90 LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
...+.|++|.|+.+.++.+. .+.+.|=.+.-... ....++|.+-|.++.|++..+.+++|++|-..++||. .|+
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k----~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~ 218 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK----IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGA 218 (737)
T ss_pred CceeEEEEECCCCCceEEec-CCeEEEeecccccc----eeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCc
Confidence 34588999999988776664 35676666665544 6667899999999999999999999999999999994 577
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEE
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLS 245 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~ 245 (271)
.+.+-..|..+ |++++|+|+ +.++.++.+ +++ --....+.|..++|||||..+++|. |.+.
T Consensus 219 ~Lf~S~~~ey~--ITSva~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 219 NLFTSAAEEYA--ITSVAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ccccCChhccc--eeeeeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence 77766667766 999999999 666666643 333 1123457899999999999999887 5533
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=6.4e-19 Score=135.14 Aligned_cols=191 Identities=14% Similarity=0.160 Sum_probs=148.0
Q ss_pred ccceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEecCcce---------eEEEecC--CcceEEEcCCCCEEEEEecC
Q 024185 44 SKGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVLMLASF---------QGILRLR--GRPTVAFDQQGLVFAVAMEA 111 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~--~~~~~~~~~~~~~l~~~~~d 111 (271)
...++..+.|.++.. . +++|+.|..|++|-++.+.. ...+..| .++++.|+|+|..||+|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~-----laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNK-----LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccc-----eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 345677788887766 4 88999999999998764332 2233444 47889999999999999999
Q ss_pred CeEEEEeCC--------C----CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC
Q 024185 112 GAIKLFDSR--------S----YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS 179 (271)
Q Consensus 112 ~~i~i~d~~--------~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 179 (271)
|.+.+|... + .+........+.+|...+..++|+|++.++++++.|..+++||+..|+....+..|.+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 999999866 2 0112344556778999999999999999999999999999999999999999988887
Q ss_pred CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--------C-----------Cc----ceeEEEEEecCCcE
Q 024185 180 PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--------G-----------NI----GVVACLKWAPRRAM 236 (271)
Q Consensus 180 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~-----------~~----~~v~~~~~s~~~~~ 236 (271)
. +..++|.|-++++++-+.|...+.+.+...+.++... . |. .--..++|+|||.+
T Consensus 167 y--vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 167 Y--VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred c--cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 6 8889999999999999988877777665433322111 0 11 12356889999999
Q ss_pred EEEeC
Q 024185 237 FVAAS 241 (271)
Q Consensus 237 l~~~~ 241 (271)
|++.+
T Consensus 245 lvtPa 249 (434)
T KOG1009|consen 245 LVTPA 249 (434)
T ss_pred EEccc
Confidence 99875
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.3e-18 Score=139.66 Aligned_cols=207 Identities=11% Similarity=0.156 Sum_probs=160.3
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCC--EEEEEecCCe
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGL--VFAVAMEAGA 113 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~--~l~~~~~d~~ 113 (271)
..-.|.+|++.|.++...|.|.+ |++|+.||++++|.+.+|.+++++...+ +.+++|+|.++ .||++..+ .
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~w-----lasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~ 465 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEW-----LASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-C 465 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcce-----eeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-c
Confidence 34568999999999999999999 9999999999999999999999998764 78899999875 45554433 3
Q ss_pred EEEEeCCCCCC---------------------------------CcceEEEecCCccceEEEEEcCCCcEEEEEec---C
Q 024185 114 IKLFDSRSYDK---------------------------------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---N 157 (271)
Q Consensus 114 i~i~d~~~~~~---------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d 157 (271)
+.+.+..-+.. ........-.|...|..+.|+..|.+|++... .
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 54544322100 00001122347788999999999999998765 4
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEE
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMF 237 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 237 (271)
..|.|+++...+...-|.... +.+.++.|+|...+|+.++.. .|+|||+..++.++.+.....+|..++.+|.|.-|
T Consensus 546 ~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred ceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 578999987665544443333 348999999999999988864 79999999988888887777889999999999999
Q ss_pred EEeC--CeEEEEcCCCC
Q 024185 238 VAAS--SVLSFWIPNPS 252 (271)
Q Consensus 238 ~~~~--~~v~iw~~~~~ 252 (271)
+.++ +.+..||+.-.
T Consensus 623 i~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLS 639 (733)
T ss_pred EEecCCCeeEEEEcccC
Confidence 9888 77888898664
No 166
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.2e-18 Score=141.94 Aligned_cols=225 Identities=14% Similarity=0.168 Sum_probs=170.1
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeE-----EEecCCc
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQG-----ILRLRGR 93 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~-----~~~~~~~ 93 (271)
.|..+.+..... ..........+|.+.|..+.|+|.|.+ +++.+.|-+-|+|-.-..+ .-. +++++..
T Consensus 337 ~Gg~hlWkt~d~-~~w~~~~~iSGH~~~V~dv~W~psGef-----lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 337 TGGFHLWKTKDK-TFWTQEPVISGHVDGVKDVDWDPSGEF-----LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred cCcEEEEeccCc-cceeeccccccccccceeeeecCCCCE-----EEEeccccceeeecccccccceeeecccccccccc
Confidence 455566652221 112233457899999999999999999 8999999999998654111 111 2355667
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCC----------C-----C--C-------------Ccc----------------
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRS----------Y-----D--K-------------GPF---------------- 127 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~-----~--~-------------~~~---------------- 127 (271)
.|+++-+....+++|.+...+++|+... + . . ++.
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 8899887666788888888888887532 0 0 0 000
Q ss_pred --------------------------eEEEecCCccceEEEEEcCCCcEEEEEecC-----CeEEEEECCCCeEEEEeec
Q 024185 128 --------------------------DTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----NNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 128 --------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~ 176 (271)
....+.||...|.+++.+|+++++|+++.. ..|++|+..+....+.+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 011233577889999999999999998763 4699999998888888888
Q ss_pred CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee----EEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 177 EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 177 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
|.-. |+.++|||||++|++.+.|+++.+|....... ....+.|..-|.+..|+|++.+++++| .+|++|...
T Consensus 571 HsLT--VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 571 HSLT--VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred cceE--EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 8876 99999999999999999999999998754332 223678999999999999999999999 779999998
Q ss_pred CC
Q 024185 251 PS 252 (271)
Q Consensus 251 ~~ 252 (271)
..
T Consensus 649 ~~ 650 (764)
T KOG1063|consen 649 DL 650 (764)
T ss_pred Cc
Confidence 87
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.2e-17 Score=118.24 Aligned_cols=222 Identities=12% Similarity=0.017 Sum_probs=155.8
Q ss_pred eeEEeeecceeeEEEEeeccc----ee--eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-
Q 024185 12 QALLFARQNIILILLESLCGI----YQ--CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF- 84 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 84 (271)
+.++.+...|.+..+....-. .. ...+-.++.|++++..++|..+ + |+++ .||.|+=|..+....
T Consensus 23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~-----Lls~-gdG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--F-----LLSG-GDGLVYGWEWNEEEES 94 (325)
T ss_pred eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--h-----eeec-cCceEEEeeehhhhhh
Confidence 344444556666665543211 11 1233446899999999999943 2 3344 459999987643211
Q ss_pred --------------eEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcE
Q 024185 85 --------------QGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS 150 (271)
Q Consensus 85 --------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 150 (271)
....+.++++++.+.|..+-++.++.|+.++-||+++++. ...+.+|++.+.++.--.....
T Consensus 95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i----~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI----QREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE----EEEEcCCcceeeeeeecccCcc
Confidence 0112334678899999887777777899999999999997 7889999999999998555556
Q ss_pred EEEEecCCeEEEEECCCCeEEEEeecCCCC--------CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 151 MLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
+++|++||++++||+++++.+..+....++ .+| .+..-+..++++|+. ..+.+|++++.++...++ -.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ip 246 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IP 246 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC-CceeEEeccCCCceEEEe-cc
Confidence 999999999999999999998887655443 244 344455668887764 479999999998888775 34
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
+++..+.|..| .+++++ +.+.-|.+..
T Consensus 247 a~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 247 ARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cceeEeeeecc--eEEEeccccceeeeeecc
Confidence 56778888644 444444 5577776654
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=2.5e-16 Score=129.85 Aligned_cols=232 Identities=21% Similarity=0.302 Sum_probs=173.1
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEccccc-ceEEeeEE-ecCCchhhhhhhhh-hccCceEEEEEecC-cceeEE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSK-GIRRGLFL-SACLQLMIALCLVL-LTTALEYGIFVLML-ASFQGI 87 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-s~~~~~~~~~~l~s-~~~dg~i~iwd~~~-~~~~~~ 87 (271)
..+.....++.+..++...+. .....+.... ..+..+.. ++++... ++. +..|+.+.+||... ......
T Consensus 78 ~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~ 150 (466)
T COG2319 78 ELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSI----LLASSSLDGTVKLWDLSTPGKLIRT 150 (466)
T ss_pred cEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceE----EeccCCCCccEEEEEecCCCeEEEE
Confidence 344444457777777766663 1223344422 35555555 6777621 334 45599999999987 677777
Q ss_pred EecCC--cceEEEcCCCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEE
Q 024185 88 LRLRG--RPTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVL 163 (271)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~ 163 (271)
+..|. +..++|+|+++.+++++. ++.+++|+...... ...+.+|...+.+++|+|++. .+++++.|+.+++|
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP----LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce----EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 77764 566999999998888875 99999999998554 556667999999999999998 44555889999999
Q ss_pred ECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee-EEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 164 DAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 164 d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
|...+.... .+..+.... + ..|+|++.++++++.|+.+++|+.+.... +..+.+|...+.++.|+|++..+++++
T Consensus 227 d~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 227 DLSTGKLLRSTLSGHSDSV-V--SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred ECCCCcEEeeecCCCCcce-e--EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 988777777 566666542 2 38999999999999999999999987665 444467888999999999888888866
Q ss_pred --CeEEEEcCCCCCCCcC
Q 024185 242 --SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 242 --~~v~iw~~~~~~~~~~ 257 (271)
+.+++|+..+......
T Consensus 304 ~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 304 SDGTVRLWDLETGKLLSS 321 (466)
T ss_pred CCCcEEEEEcCCCceEEE
Confidence 5599998877654433
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2e-18 Score=129.76 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=145.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-cce
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEV 139 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v 139 (271)
+|++-..|.|++||..+++.+..++++.. +.+.|.. ....+.+++.||+|++||++.... ...+...++. .+.
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGTPF 120 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCCcc
Confidence 66788899999999999999999988863 4477766 456789999999999999998775 3344455555 567
Q ss_pred EEEEEcCCCcEEEEEec----CCeEEEEECCCCeE-EEEe-ecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEcCCc
Q 024185 140 CDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEK-RCGF-SLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTR 212 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~ 212 (271)
.|++.+-.++.+++|.. +..+.+||.|..+. ++.+ ..|... |++++|+|. -+.|++|+.||.+.++|++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD--VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD--VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc--ceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 88888777888888764 77899999998776 4443 345444 999999996 568999999999999999754
Q ss_pred ee---EEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 213 NE---VACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 213 ~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
.. +...-.|...|.++.|..++ +.+.+-+ ++..+|+++.+......
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 22 22223477789999999887 2344444 99999999988754433
No 170
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.81 E-value=1.2e-17 Score=122.65 Aligned_cols=150 Identities=17% Similarity=0.432 Sum_probs=110.2
Q ss_pred EEEcCCCCEEEEEec----------CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE--ecCCeEEEE
Q 024185 96 VAFDQQGLVFAVAME----------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT--TTNNNIYVL 163 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~~~ 163 (271)
+.|+|+|++|+.-.. -+...+|.++.... +.....+. ..++|.+++|+|+|+.|++. ..++.+.+|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 889999987775432 13455666644332 23344443 23579999999999987655 357799999
Q ss_pred ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC---CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 164 DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
|++ ++.+..+. ... ...+.|+|+|+++++++. .|.+.+||+++.+.+.... |. .++.++|+|||++++++
T Consensus 89 d~~-~~~i~~~~--~~~--~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQP--RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec--CCC--ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEE
Confidence 996 66666654 222 677999999999998875 4679999999999888875 33 36899999999999988
Q ss_pred C--------CeEEEEcCCCCCC
Q 024185 241 S--------SVLSFWIPNPSSN 254 (271)
Q Consensus 241 ~--------~~v~iw~~~~~~~ 254 (271)
. +.++||+.....+
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EeccceeccccEEEEEecCeEe
Confidence 4 4589999975433
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.6e-17 Score=127.63 Aligned_cols=144 Identities=8% Similarity=-0.021 Sum_probs=113.2
Q ss_pred EeeecceeeEEEEeeccc-----eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec--------C
Q 024185 15 LFARQNIILILLESLCGI-----YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM--------L 81 (271)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~--------~ 81 (271)
.-+..+..+..|....+. ....++..+..|..+++++.|+|+|.. ++||+.+|.+.+|-.. +
T Consensus 30 aT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gel-----LASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 30 ATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGEL-----LASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred ecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCe-----eeecCCCceEEEEEecCcCCccccc
Confidence 333445555555544332 234577788999999999999999999 9999999999999765 2
Q ss_pred -----c---ceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 82 -----A---SFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 82 -----~---~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
. ...+.+.+| .+.-++|+|+++++++++.|..+++||+..++. ...+..|...+..++|.|-++++
T Consensus 105 e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l----~~~~~dh~~yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 105 EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL----LAILDDHEHYVQGVAWDPLNQYV 180 (434)
T ss_pred hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee----Eeeccccccccceeecchhhhhh
Confidence 1 123344555 456699999999999999999999999999987 67788999999999999999999
Q ss_pred EEEecCCeEEEEECCC
Q 024185 152 LLTTTNNNIYVLDAYG 167 (271)
Q Consensus 152 ~~~~~d~~i~~~d~~~ 167 (271)
++-+.|...+.+++..
T Consensus 181 ~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 181 ASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhccCcccceeeeee
Confidence 9988887666666543
No 172
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.7e-17 Score=137.29 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=129.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhcc---CceEEEEEecCcceeEE--EecCCcceEEEcCCCCEEEEEe-cCCeE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTT---ALEYGIFVLMLASFQGI--LRLRGRPTVAFDQQGLVFAVAM-EAGAI 114 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-~d~~i 114 (271)
+..+...+....|||+|+. ++..+. +..|++||+++++.... +.++ ...++|+|||+.|+.++ .+|..
T Consensus 199 lt~~~~~v~~p~wSPDG~~-----la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSK-----LAYVSFENKKSQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred eccCCCccccceEcCCCCE-----EEEEEecCCCcEEEEEeCCCCceEEEecCCCc-cCceeECCCCCEEEEEEecCCcE
Confidence 5566778889999999998 444333 35799999988764332 2332 33589999999888764 57765
Q ss_pred EE--EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECC
Q 024185 115 KL--FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 115 ~i--~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
.+ ||+.+++ ...+..+...+....|+|||+.|+.++ .++...+|++... .....+ .+.. ....|+|
T Consensus 273 ~Iy~~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~Sp 342 (429)
T PRK01742 273 NIYVMGANGGT-----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISA 342 (429)
T ss_pred EEEEEECCCCC-----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCC
Confidence 54 5665554 334455667788999999999887665 4677788876432 222222 2221 3478999
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
||++++..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++ +...+|++
T Consensus 343 DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 343 DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 999998887764 666999888765433322 235788999999999886 55666654
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=5.6e-18 Score=123.33 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=160.8
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcc-cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-----
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFA-TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ----- 85 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----- 85 (271)
+.|+-+.+.|.+..|........ ..++ .+...+..+..-|++. +.+-+.|+.+.+|++.-+..+
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~----~~~r~~g~~~it~lq~~p~d~------l~tqgRd~~L~lw~ia~s~~i~i~Si 95 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDL----PLIRLFGRLFITNLQSIPNDS------LDTQGRDPLLILWTIAYSAFISIHSI 95 (323)
T ss_pred hhhhcccccceEEEEEeecCccc----hhhhhhccceeeceeecCCcc------hhhcCCCceEEEEEccCcceEEEeee
Confidence 45555667788888877665222 2356 5667788888888755 668899999999988542110
Q ss_pred --------------------EEE--ec------C--------------------CcceEEEc--C-CCC--EEEEEecCC
Q 024185 86 --------------------GIL--RL------R--------------------GRPTVAFD--Q-QGL--VFAVAMEAG 112 (271)
Q Consensus 86 --------------------~~~--~~------~--------------------~~~~~~~~--~-~~~--~l~~~~~d~ 112 (271)
+.+ +. | ....+++. . +++ ++++|.++|
T Consensus 96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg 175 (323)
T KOG0322|consen 96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG 175 (323)
T ss_pred eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence 000 00 0 01113332 1 222 466788899
Q ss_pred eEEEEeCCCCCC------CcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC--eEEE--EeecCCCCCc
Q 024185 113 AIKLFDSRSYDK------GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG--EKRC--GFSLEPSPNT 182 (271)
Q Consensus 113 ~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~--~~~~~~~~~~ 182 (271)
.+.+||+.++.. ..........|..+|.++.|.+.-..=++|+.+..+..|++... .+.. ...... ..
T Consensus 176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn--pG 253 (323)
T KOG0322|consen 176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN--PG 253 (323)
T ss_pred eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC--CC
Confidence 999999988632 00013335568899999999986555677888888999988543 2211 122222 23
Q ss_pred eeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 183 NTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
+..+.+-||++.+|+++.|+.|++|..++.+++..++-|.+.|++++|+|+..++|++| +.|.+|++
T Consensus 254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 77799999999999999999999999999999999999999999999999999999999 77999986
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.1e-18 Score=121.01 Aligned_cols=200 Identities=15% Similarity=0.134 Sum_probs=147.0
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecC---------c-ceeEEEecCCcce--EEEcCCCCEEEEEecCCeEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLML---------A-SFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~-~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~ 115 (271)
|-.-+++|.+++ |+.|..+|.|.+..+++ + ..+...+.|..+. ++|. ..+|++++ ||.|+
T Consensus 13 vf~qa~sp~~~~-----l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQY-----LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHhhCCcceE-----EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEE
Confidence 444678999998 88999999999998753 1 2333446676444 7776 45677776 69999
Q ss_pred EEeCCCCCC----CcceEEEecCC-----ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeE
Q 024185 116 LFDSRSYDK----GPFDTFLVGGD-----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 116 i~d~~~~~~----~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 186 (271)
-|.-+.... ++.-....+-| -..|+++-..|..+.+++++.|+.++-||+++|+..+.+++|... +.++
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY--vH~v 162 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY--VHSV 162 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce--eeee
Confidence 998654321 11111111112 246889999998888888889999999999999999999999876 8888
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC----------cceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----------IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~ 255 (271)
.--.....+++|++||++++||.++++++..+... ..+|-+++- +..+|++|+ -.+.+|+++..+..
T Consensus 163 v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t 240 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSEST 240 (325)
T ss_pred eecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCce
Confidence 77444556899999999999999999998876422 234555544 567999998 66999999998776
Q ss_pred cCCC
Q 024185 256 TDES 259 (271)
Q Consensus 256 ~~~~ 259 (271)
..+.
T Consensus 241 ~vfp 244 (325)
T KOG0649|consen 241 CVFP 244 (325)
T ss_pred EEEe
Confidence 6554
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=2.4e-17 Score=123.54 Aligned_cols=206 Identities=13% Similarity=0.137 Sum_probs=147.6
Q ss_pred ccceEEeeEEecCCch-hhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCC-CEEEEEecCCeEEEEeC
Q 024185 44 SKGIRRGLFLSACLQL-MIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQG-LVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~-~~l~~~~~d~~i~i~d~ 119 (271)
++.....++|+-+... -.. +|.++.-|.|++.|+.+++....+.+|+ ++.+.+.|+. +++++++.|..|++|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~--la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPF--LAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCee--EEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 4556666777654331 111 7788899999999999999999998886 5669999976 78999999999999999
Q ss_pred CCCCCCcceEE-EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeec------CC--------------
Q 024185 120 RSYDKGPFDTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSL------EP-------------- 178 (271)
Q Consensus 120 ~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~-------------- 178 (271)
++..+ +..+ -+.+|.+.|.++.|+++|.++++++.|-++++|++...+....++. ..
T Consensus 166 ~~~~C--v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 166 QTDVC--VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred cCCeE--EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99886 2222 2568999999999999999999999999999999974322111110 00
Q ss_pred ------CCCceeeEEECCCCCEEEEecCCCcEEEEEc-CCcee-------------EEEecCCcceeEEEE--EecCCcE
Q 024185 179 ------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNE-------------VACWNGNIGVVACLK--WAPRRAM 236 (271)
Q Consensus 179 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~-------------~~~~~~~~~~v~~~~--~s~~~~~ 236 (271)
+...|-|+.|- |+++++-+.++.|..|.. +-.+. +.+++-....|+-+. |.|-+++
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 00112223332 578899899999999987 21111 223333444555555 4556789
Q ss_pred EEEeC--CeEEEEcCCCCCCC
Q 024185 237 FVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 237 l~~~~--~~v~iw~~~~~~~~ 255 (271)
||.|. |++.+||++..+..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred HhhccCCCcEEEEECCCCCCc
Confidence 99987 99999999887664
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=4.4e-18 Score=130.31 Aligned_cols=163 Identities=13% Similarity=0.170 Sum_probs=132.6
Q ss_pred EecCCcce--EEEcC-CCCEEEEEecCCeEEEEeCCCCCCCc---ceEEEecCCccceEEEEEcCC-CcEEEEEecCCeE
Q 024185 88 LRLRGRPT--VAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGP---FDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNI 160 (271)
Q Consensus 88 ~~~~~~~~--~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i 160 (271)
+.+|..++ ++|+| +...||+|+.|.+|.+|++..+.+.. .....+.+|...|--++|+|. .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 45666555 88998 45689999999999999987654310 124567899999999999994 5678899999999
Q ss_pred EEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcc-eeEEEEEecCCcEEEE
Q 024185 161 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIG-VVACLKWAPRRAMFVA 239 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~ 239 (271)
.+||+.+++.+-++. |... |.+++|+.||.++++++.|..|+|||.++++.+..-.+|.+ .-..+-|-.+|.++.+
T Consensus 157 ~iWnv~tgeali~l~-hpd~--i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDM--VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEeccCCceeeecC-CCCe--EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999888877 5554 99999999999999999999999999999999998878865 3456678889985555
Q ss_pred eC-----CeEEEEcCCCCC
Q 024185 240 AS-----SVLSFWIPNPSS 253 (271)
Q Consensus 240 ~~-----~~v~iw~~~~~~ 253 (271)
|- ..+-+||.....
T Consensus 234 Gfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLE 252 (472)
T ss_pred ccccccccceeccCccccc
Confidence 52 459999987643
No 177
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.1e-16 Score=130.62 Aligned_cols=202 Identities=17% Similarity=0.169 Sum_probs=136.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|||+|+.+++ ....+.+..+++||+.+++........+ ...++|+|||+.|+.. +.+| .|++
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~--~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAY--VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEE--EEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 3345567888999999998443 1112335679999998886544333222 3458999999988865 3344 5999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-C--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-N--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+...+....|+|||+.|+..+.+ + .|+.+|+.+++.. .+..... ......|+|||+
T Consensus 272 ~d~~tg~~-----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~SpDG~ 343 (429)
T PRK03629 272 MDLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS--QNQDADVSSDGK 343 (429)
T ss_pred EECCCCCE-----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC--CccCEEECCCCC
Confidence 99987763 2333444567889999999999877754 3 4666677766543 3333322 245689999999
Q ss_pred EEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCC
Q 024185 194 YVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSN 254 (271)
Q Consensus 194 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~ 254 (271)
+++..+.+ ..|.+||+.+++... +... .......|+|||++|+.++ ..+.+++++.+..
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 99876543 358899998876543 3322 2245788999999888876 2378888865443
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=2.8e-17 Score=121.29 Aligned_cols=196 Identities=12% Similarity=0.130 Sum_probs=144.3
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-eEEEecC-------CcceEEEcC--CCCEEEEEecCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-QGILRLR-------GRPTVAFDQ--QGLVFAVAMEAG 112 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-------~~~~~~~~~--~~~~l~~~~~d~ 112 (271)
.+-+.++|+.|.|++.. +++-. |..|.+|+++.+.. ++.+... ....-+|+| +++.+++.+ |+
T Consensus 121 eavg~i~cvew~Pns~k-----lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~ 193 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDK-----LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DS 193 (370)
T ss_pred HHhCceeeEEEcCCCCe-----eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CC
Confidence 34568999999999988 33333 88999999987665 4444221 234467888 777777766 89
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
++..||+++... . ...-.+|...|..+.|+|+.+ .|++++.||.|++||.|.. .++..+..|.+ ++.++.|+|
T Consensus 194 tl~~~D~RT~~~--~-~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~ 268 (370)
T KOG1007|consen 194 TLQFWDLRTMKK--N-NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNP 268 (370)
T ss_pred cEEEEEccchhh--h-cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecC
Confidence 999999998764 1 112346888899999999865 4678899999999999864 45666776665 499999999
Q ss_pred C-CCEEEEecCCCcEEEEEcCCc-----------------------------eeEEEecCCcceeEEEEEecCCcEE-EE
Q 024185 191 D-GQYVVSGSGDGTLHAWNINTR-----------------------------NEVACWNGNIGVVACLKWAPRRAMF-VA 239 (271)
Q Consensus 191 ~-~~~l~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l-~~ 239 (271)
. .+++++|+.|..|.+|...+- ..+.++..|...|.+++||.-..++ |+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 6 567789999999999965321 1133567789999999999866654 45
Q ss_pred eC--CeEEEEcCC
Q 024185 240 AS--SVLSFWIPN 250 (271)
Q Consensus 240 ~~--~~v~iw~~~ 250 (271)
-| |.+.|=.+.
T Consensus 349 LSYDGRviIs~V~ 361 (370)
T KOG1007|consen 349 LSYDGRVIISSVP 361 (370)
T ss_pred eccCceEEeecCC
Confidence 56 777765543
No 179
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.78 E-value=4.1e-18 Score=135.22 Aligned_cols=198 Identities=16% Similarity=0.191 Sum_probs=140.1
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
.++++...|.+..++..........-+.-...+..+.++.|-|.++.+ |+.+-.+|.++++|.+- ..+..
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~----Fl~a~~sGnlyly~~~~------~~~~t 256 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSL----FLVAHASGNLYLYDKEI------VCGAT 256 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCce----EEEEEecCceEEeeccc------cccCC
Confidence 467777777777777655311111111112234678899998887764 55778889999988721 11112
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
.++....+++..++.....+. ... .|+..+.+ ..+.|..++|+|||++||+.+.||.++|||..+.+.+.
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk-------~~r-NPv~~w~~--~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSK-------KTR-NPVARWHI--GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred CCcccccCCCCeeEEeeeecc-------ccC-CccceeEe--ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 333444456665655432211 110 22333333 24689999999999999999999999999998887776
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
.++..-.. ..|++|||||+|+++|++|.-|.||.+..++.+..-++|+++|+.++|.|
T Consensus 327 ~mkSYFGG--LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 327 VMKSYFGG--LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHhhccc--eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 66554444 99999999999999999999999999999999999999999999999984
No 180
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=5.7e-16 Score=128.64 Aligned_cols=202 Identities=14% Similarity=0.143 Sum_probs=137.2
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|+|+|+.+++ .-....+..|++||+.+++........+ ....+|+|||+.|+.. +.++ .|++
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay--~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITY--MSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEE--EEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 5566778889999999998433 1111235789999998887644332222 3458999999987644 4454 4788
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C--CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+........|+|||+.++..+. + ..|+++|+.+++..+ +..... .+....|+|||+
T Consensus 275 ~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~--~~~~~~~SpdG~ 346 (435)
T PRK05137 275 MDLRSGTT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGG--RYSTPVWSPRGD 346 (435)
T ss_pred EECCCCce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCC--cccCeEECCCCC
Confidence 89887663 334455566778999999999988764 3 368888987665433 332222 255689999999
Q ss_pred EEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---C-----eEEEEcCCCCCC
Q 024185 194 YVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S-----VLSFWIPNPSSN 254 (271)
Q Consensus 194 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~-----~v~iw~~~~~~~ 254 (271)
+++..+.+ ..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+ + .+.++|+.++..
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 99876543 3688889765543 3332 223467899999999877653 1 477778876544
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.7e-15 Score=121.65 Aligned_cols=227 Identities=10% Similarity=0.107 Sum_probs=145.9
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-Ccce--eEEEecC-Cc
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASF--QGILRLR-GR 93 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~--~~~~~~~-~~ 93 (271)
..++.+..++.... .....++.+.. .+....+.++|++++++ +++..++.|.+|+++ +++. ....... ..
T Consensus 9 ~~~~~I~~~~~~~~-g~l~~~~~~~~-~~~~~~l~~spd~~~ly----v~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 9 PESQQIHVWNLNHE-GALTLLQVVDV-PGQVQPMVISPDKRHLY----VGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred CCCCCEEEEEECCC-CceeeeeEEec-CCCCccEEECCCCCEEE----EEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 44677777777422 12223343433 34566789999999842 244568999999996 3332 2222222 23
Q ss_pred ceEEEcCCCCEEEEEec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeEE
Q 024185 94 PTVAFDQQGLVFAVAME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKR 171 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~ 171 (271)
..++++|+++++++++. ++.|.+|++++..........+. +.....+++++|+++++++++ .++.|.+||+.+...+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 34999999998888764 78999999974321000111122 224567789999999887665 4699999999763322
Q ss_pred E-----EeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCC--c--eeEEEecCC------cceeEEEEEecCCc
Q 024185 172 C-----GFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINT--R--NEVACWNGN------IGVVACLKWAPRRA 235 (271)
Q Consensus 172 ~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~--~~~~~~~~~------~~~v~~~~~s~~~~ 235 (271)
. ....... .....+.|+|+|++++++.. ++.|.+||+.. + +.++.+... ......+.++|+++
T Consensus 162 ~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1 1111111 23567999999999988877 89999999973 2 334443221 11234688999999
Q ss_pred EEEEeC---CeEEEEcCCCC
Q 024185 236 MFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 236 ~l~~~~---~~v~iw~~~~~ 252 (271)
+++++. +.|.+|+++..
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 241 HLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEecCCCCeEEEEEEeCC
Confidence 998885 67999998543
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=6.9e-17 Score=119.30 Aligned_cols=208 Identities=13% Similarity=0.113 Sum_probs=148.7
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----eeEEEecC-------CcceEEEcC-CCCEEEEEec
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----FQGILRLR-------GRPTVAFDQ-QGLVFAVAME 110 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-------~~~~~~~~~-~~~~l~~~~~ 110 (271)
.|.-+++.+.|.|+......- + .++.+..+|+|.+...+ +...+..+ ..+++.|+. +-+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pd-l-LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPD-L-LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcc-h-hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 566778889999987532221 2 23344579999886422 11112111 234466765 5689999999
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEEEEeecCCC-CCceeeEEE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS-PNTNTEATF 188 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~ 188 (271)
|.+..|||++++.. ......+-+|..+|..++|..++ +.+++.+.||.+++||+|..+--..+..... ......++|
T Consensus 172 DTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 172 DTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred cCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999998732 12245577899999999999965 4678899999999999997654333322222 345778888
Q ss_pred CCC-CCEEEEecCC-CcEEEEEcCC-ceeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCC
Q 024185 189 TPD-GQYVVSGSGD-GTLHAWNINT-RNEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 189 ~~~-~~~l~~~~~d-g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~ 253 (271)
++. -+++|+-..| ..|.|.|++. ..++.++++|.+.|++++|.|.. ..|++++ ..+.+||+..-.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 875 4577766554 5799999986 55688899999999999999965 5788887 669999997643
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=3.1e-16 Score=119.29 Aligned_cols=137 Identities=18% Similarity=0.291 Sum_probs=115.2
Q ss_pred CceEEEEEecCcceeEEEecC---CcceEEEcC--CCCEEEEE--ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 71 ALEYGIFVLMLASFQGILRLR---GRPTVAFDQ--QGLVFAVA--MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
.+.|+|||+++.+.+.++..- ....+++++ .+.+++.- ...|.|.+||..+-+. ...+.+|.+.+.+++
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~----v~~I~aH~~~lAala 180 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP----VNTINAHKGPLAALA 180 (391)
T ss_pred cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee----eeEEEecCCceeEEE
Confidence 344999999999998888543 222355555 45588865 3468999999988765 666779999999999
Q ss_pred EcCCCcEEEEEecCCe-EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 144 FSNDGKSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 144 ~s~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
|+++|.+||+++..|+ ||++.+.+|+.+..|........|.+++|+|++++|++.+..++|+++.+..
T Consensus 181 fs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 181 FSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999999887 7999999999999998777677899999999999999999999999998754
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=3.1e-15 Score=123.33 Aligned_cols=218 Identities=21% Similarity=0.309 Sum_probs=169.0
Q ss_pred ceeeEEEEeec-cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc-CceEEEEEecCcceeEEEecCC--cce
Q 024185 20 NIILILLESLC-GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT-ALEYGIFVLMLASFQGILRLRG--RPT 95 (271)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~--~~~ 95 (271)
++.+..++... . .....+..|...+..+.++|++.. +++++. |+.+++|+..++..+..+..|. +.+
T Consensus 133 d~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 133 DGTVKLWDLSTPG----KLIRTLEGHSESVTSLAFSPDGKL-----LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred CccEEEEEecCCC----eEEEEEecCcccEEEEEECCCCCE-----EEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 55666666654 2 445568889999999999999986 566665 9999999999888888888764 566
Q ss_pred EEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEE-EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE-EE
Q 024185 96 VAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTF-LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-RC 172 (271)
Q Consensus 96 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~ 172 (271)
++|+|++. .+++++.|+.+++||...+.. .. .+.+|.... ...|+|++..+++++.|+.+++|+.+.... ..
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKL----LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcE----EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 99999998 555558999999998885543 33 467777775 448999998889999999999999987665 44
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--CCcceeEEEEEecCCcEEEEe-C--CeEEEE
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAA-S--SVLSFW 247 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~-~--~~v~iw 247 (271)
.+..|. ..+.++.|+|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . +.+.+|
T Consensus 279 ~~~~~~--~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 279 TLSGHS--SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred EEecCC--ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence 443443 348899999998888888889889999998888777665 787789999994332455555 3 678889
Q ss_pred cCCCCC
Q 024185 248 IPNPSS 253 (271)
Q Consensus 248 ~~~~~~ 253 (271)
+.....
T Consensus 357 ~~~~~~ 362 (466)
T COG2319 357 DLRTGK 362 (466)
T ss_pred ecCCCc
Confidence 998876
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2.7e-15 Score=120.47 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=132.9
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc-c---eeEEEecC-CcceEEEcCCCCEEEEEe-cCCeEEEEeCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-S---FQGILRLR-GRPTVAFDQQGLVFAVAM-EAGAIKLFDSR 120 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~---~~~~~~~~-~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~ 120 (271)
....+.++|+++.+++ +...++.+.+|++++. . .+..+.+. ....++++|+++++++++ .++.|.+||+.
T Consensus 81 ~p~~i~~~~~g~~l~v----~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 81 SPTHISTDHQGRFLFS----ASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CceEEEECCCCCEEEE----EEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 4567999999998432 4445899999999743 2 23333332 244588999999887654 56899999997
Q ss_pred CCCC-Ccc--eEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCC--Ce--EEEEeecCC----CCCceeeEEE
Q 024185 121 SYDK-GPF--DTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYG--GE--KRCGFSLEP----SPNTNTEATF 188 (271)
Q Consensus 121 ~~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~--~~--~~~~~~~~~----~~~~v~~~~~ 188 (271)
+... .+. ....... ......++|+|+|+++++++. +++|.+||+.. ++ .+..+.... .+.....+.+
T Consensus 157 ~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 6332 100 0111111 244678999999999988876 89999999973 32 333332211 1122345889
Q ss_pred CCCCCEEEEecC-CCcEEEEEcCCcee----EEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCC
Q 024185 189 TPDGQYVVSGSG-DGTLHAWNINTRNE----VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPN 250 (271)
Q Consensus 189 ~~~~~~l~~~~~-dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~ 250 (271)
+|++++++++.. ++.|.+|++.+... +..... ......+.++|||++|++++ ++|.+|+++
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999999998865 68999999865332 222222 12456889999999998876 779999874
No 186
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.1e-16 Score=129.32 Aligned_cols=201 Identities=18% Similarity=0.199 Sum_probs=135.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|+|+|+.+++ ......+..|++||+.+++........+ ....+|+|||+.++.. +.+| .|++
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~--~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAY--VSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred eecCCCccccccCCCCCCEEEE--EecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 4445667888999999998433 1111234579999998887544332232 2358999999987644 4454 6999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+......++|+|||++|+..+. +| .|+++|+.+++..+ +..... ....++|+|||+
T Consensus 277 ~d~~~g~~-----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~--~~~~~~~SpDG~ 348 (433)
T PRK04922 277 MDLGSRQL-----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN--YNARASVSPDGK 348 (433)
T ss_pred EECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC--CccCEEECCCCC
Confidence 99988763 334445555677899999999887764 44 47777877766433 322222 244689999999
Q ss_pred EEEEecCCC---cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCC
Q 024185 194 YVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSS 253 (271)
Q Consensus 194 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~ 253 (271)
+++..+.++ .|.+||+.+++.. .+. +........|+|||++++..+ +.+.+++++.+.
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 998765432 6999999887765 333 222456789999999877664 358888886543
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=3.7e-16 Score=129.61 Aligned_cols=238 Identities=12% Similarity=0.102 Sum_probs=166.7
Q ss_pred eccee-EEeeecceeeEEEEeeccceee--EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-
Q 024185 9 PITQA-LLFARQNIILILLESLCGIYQC--MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF- 84 (271)
Q Consensus 9 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 84 (271)
|.... ++.|+.+|++..|+...+...+ .....-..|...+..+.|-.+... .- |++++.||.|..|+++.-..
T Consensus 252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~--f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TE--FFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-Cc--eEEEecCCcEeeeeccccccc
Confidence 44444 4455789999999998876532 222334567778888888654332 11 77899999999998864321
Q ss_pred eEE-----E--------ecCCcceEEEcCC-CCEEEEEecCCeEEEEeCCCCCCCc----ceEEEecCCccceEEEEEcC
Q 024185 85 QGI-----L--------RLRGRPTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYDKGP----FDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 85 ~~~-----~--------~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~s~ 146 (271)
... . ....+++++|.+. -..+++|+..|.|+--.....+..+ .....+..|.++|+++.++|
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCC
Confidence 110 0 1224566899874 4689999999999875544433322 11224556889999999999
Q ss_pred CCcEEEEEecCCeEEEEECC-CCeEEEEeecCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCC--ceeEEEecCCc
Q 024185 147 DGKSMLLTTTNNNIYVLDAY-GGEKRCGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINT--RNEVACWNGNI 222 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 222 (271)
=+..++..+.|.++++|... ...++..+..+... +++++|||... .++++..||.+.+||+.. ..++.+...+.
T Consensus 409 F~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~--v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~ 486 (555)
T KOG1587|consen 409 FYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY--VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCS 486 (555)
T ss_pred CccceeeeeccceeEeccccCCCCcchhhhhccce--eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccc
Confidence 76666555559999999977 55555555555544 99999999865 566777799999999974 34455554456
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
...+.+.|+++|+.|++|+ |++++|++..
T Consensus 487 ~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 487 PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 6678889999999999998 9999999964
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.3e-16 Score=134.40 Aligned_cols=232 Identities=14% Similarity=0.190 Sum_probs=165.1
Q ss_pred EEeeecceeeEEEEeeccc-eeeEEEEEcccccc-------eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 14 LLFARQNIILILLESLCGI-YQCMIIEFFATSKG-------IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
++.+.+||.+.+|+.+... .++..+.-+.+-.+ .-..+.|.....+ |+++|.-..|+|||.+.....
T Consensus 1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-----Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-----LLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCe-----EEecCCeeEEEEEecccceeE
Confidence 4555679999999888765 34454554443222 1123556555555 556666899999999998888
Q ss_pred EEEecCCcce-EEEcC---CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccc--eEEEEEcCCCcE-EEEEecCC
Q 024185 86 GILRLRGRPT-VAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKS-MLLTTTNN 158 (271)
Q Consensus 86 ~~~~~~~~~~-~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~d~ 158 (271)
+.+......+ -++++ .|+.+++|..||.|++||.+..... -.......|... |..+.+.+.|-- |++|+.||
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 8887665433 34443 4689999999999999999865431 123345567766 999999996654 99999999
Q ss_pred eEEEEECCCCeEEE--EeecCCCCC-ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC-------CcceeEEE
Q 024185 159 NIYVLDAYGGEKRC--GFSLEPSPN-TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG-------NIGVVACL 228 (271)
Q Consensus 159 ~i~~~d~~~~~~~~--~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~ 228 (271)
.|++||++...... .+..+...+ ..+++..+++...+|+|+. +.|+||++. |+.+..++. ..+.+.|+
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCL 1357 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCccee
Confidence 99999999742222 223333222 4888999999999999998 899999985 444443322 23567999
Q ss_pred EEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 229 KWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 229 ~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
+|+|..-++|+|+ ..|.||..+...
T Consensus 1358 ~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1358 AFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eecchhHhhhhccCCceEEEeecCCcC
Confidence 9999998999887 779999877654
No 189
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=2.3e-18 Score=134.39 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=170.2
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcc
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPF 127 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 127 (271)
..+.++.+|+. ++.|+..|.+-.+|+.+++....+... .+..+.|-.+.+++|++- ...+++||-..-+
T Consensus 133 Y~~~ytrnGrh-----lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE---- 202 (545)
T KOG1272|consen 133 YHLDYTRNGRH-----LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE---- 202 (545)
T ss_pred eeeeecCCccE-----EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE----
Confidence 34788999998 889999999999999999988888765 466799988888888775 6789999987655
Q ss_pred eEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEE
Q 024185 128 DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 207 (271)
Q Consensus 128 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 207 (271)
...++.| ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+. +..++-+|-...+-.|..+|+|.+|
T Consensus 203 -lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~--~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 203 -LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR--TDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred -Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc--cchhhcCCccceEEEcCCCceEEec
Confidence 4445444 67999999999999999999999999999999999888766655 6668889988889999999999999
Q ss_pred EcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCCC
Q 024185 208 NINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDEST 260 (271)
Q Consensus 208 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~~ 260 (271)
...+.+++..+..|.++|.++++.++|+|+++++ ..++|||++.........+
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 9999999999999999999999999999999998 7799999998776555443
No 190
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.9e-16 Score=118.63 Aligned_cols=195 Identities=16% Similarity=0.201 Sum_probs=141.5
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe---cCCcceEEEcCCC-CEEEEEecCCeEEEEeCCC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR---LRGRPTVAFDQQG-LVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~ 121 (271)
-.+..++|++. +.. ++++..|-.|++||-.. .....++ ...+.+++|-|.+ +.|++|.. +-|.+|....
T Consensus 99 ~dlr~~aWhqH---~~~--fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQH---IIA--FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSR 171 (445)
T ss_pred cceeeEeechh---hhh--hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCc
Confidence 35666888883 333 89999999999999876 3333333 3468899999976 56777765 4588997642
Q ss_pred CC----------CCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCCeEEEEeecCCCCCceeeEEECC
Q 024185 122 YD----------KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 122 ~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 190 (271)
.. ..+.+.....+| .+|++++|++||..+++++. |..|.+||..++..+....... +.+.-+.|||
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl--gg~slLkwSP 248 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL--GGFSLLKWSP 248 (445)
T ss_pred ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC--CceeeEEEcC
Confidence 11 112334555666 78999999999999998876 7789999999987765442222 3477899999
Q ss_pred CCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 191 DGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
|+.+++++.-|+..++|.... .....-. -..+.|....|+|+|++|+.+. +.-++|.+..
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred CCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 999999999999999996543 3333322 2345899999999999766554 8877887654
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=2.8e-16 Score=117.50 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=159.6
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc---eeEEEecCC--cceEEEcCCCCEEEEEecCCeEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS---FQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
|......++|.+|++++.. +|.+.....+.||.....+ ...++..|. ++.++|+|..+.|++++.|..-+
T Consensus 6 ~~~~~~pitchAwn~drt~-----iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQ-----IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred eeeccCceeeeeecCCCce-----EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 4445678999999999998 7788888899999887654 556676664 56799999999999999999999
Q ss_pred EEeC-CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE--EEeecCCCCCceeeEEECCCC
Q 024185 116 LFDS-RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 116 i~d~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 192 (271)
+|.. ..++. .....+..+....+++.|+|.++.|++|+.-..|.+|-++....= .+.........|.+++|+|++
T Consensus 81 Vw~~~~~~~W--kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 81 VWTQPSGGTW--KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccccCCCCee--ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 9998 55554 335556678899999999999999999999999999877543321 111111222459999999999
Q ss_pred CEEEEecCCCcEEEEEc-----CC-------------ceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCC
Q 024185 193 QYVVSGSGDGTLHAWNI-----NT-------------RNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~ 252 (271)
-++++|+.|+..+++.. ++ |+.+.++....+.+..+.|+|+|..|+-.+ +.+.+=|....
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999999999998863 11 233344445568899999999999999887 77888887665
Q ss_pred C
Q 024185 253 S 253 (271)
Q Consensus 253 ~ 253 (271)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 4
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=2.5e-16 Score=127.76 Aligned_cols=225 Identities=13% Similarity=0.068 Sum_probs=166.4
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE------EecCC-
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI------LRLRG- 92 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~- 92 (271)
++.+-.+.....-.+...+..+..|...|..+.|+|-.+.+ |++++.|..|+||.+..+..... +.+..
T Consensus 54 G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~L----LAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~ 129 (1012)
T KOG1445|consen 54 GGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADEL----LATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNV 129 (1012)
T ss_pred CceEEEEeccccCccccccceeecccceeeccCccccchhh----hhcccCCCeeEEEecCCCcccccCCcceeecCCce
Confidence 34555555544444455677789999999999999988775 77999999999999975532221 12222
Q ss_pred -cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-CeE
Q 024185 93 -RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEK 170 (271)
Q Consensus 93 -~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~ 170 (271)
+.++.|+|...-|++.+..|++++||+.+.+. ...+.+|...|.+..|+.||+++++++.|..|+|||-+. ++.
T Consensus 130 ~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~----~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~p 205 (1012)
T KOG1445|consen 130 IVECLRFHPTADGILASGAHGSVYITDISTQKT----AVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEP 205 (1012)
T ss_pred EEEEeecccCcCceEEeccCceEEEEEcccCce----eecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCc
Confidence 45699999777677777789999999999887 788899999999999999999999999999999999875 567
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCC----CcEEEEEcCC-ceeEEEecC-CcceeEEEEEecCCcEEEEeC-Ce
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----GTLHAWNINT-RNEVACWNG-NIGVVACLKWAPRRAMFVAAS-SV 243 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~ 243 (271)
++...+|.+. .-..+.|.-+-..|++.+.+ ..+++||.+. +..++++.- ....|.-.-|.||.++|+-++ |+
T Consensus 206 iQ~te~H~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~ 284 (1012)
T KOG1445|consen 206 IQTTEGHGGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGT 284 (1012)
T ss_pred cccccccccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCc
Confidence 7777777663 33457787665567766554 5799999886 334444421 223455667899999888777 44
Q ss_pred --EEEEcCCCCC
Q 024185 244 --LSFWIPNPSS 253 (271)
Q Consensus 244 --v~iw~~~~~~ 253 (271)
+..+.+....
T Consensus 285 ~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 285 NKLFMLEMQDRQ 296 (1012)
T ss_pred ceEEEEEecCCC
Confidence 6666665443
No 193
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3e-15 Score=123.84 Aligned_cols=199 Identities=17% Similarity=0.157 Sum_probs=128.7
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEE-EecCCeEEEE-
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAV-AMEAGAIKLF- 117 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~d~~i~i~- 117 (271)
+..+...+....|+|+|+.+++. ........|.+||+.+++........+ ....+|+|||+.|+. .+.+|...+|
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~--s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYV--SFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEE--EccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 33456678889999999984331 111223569999999887654432332 345899999998875 5667765555
Q ss_pred -eCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEE--ECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 118 -DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVL--DAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 118 -d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
|...+. ...+..+........|+|||+.++..+. ++...+| ++.+++... +..... ......|+|||+
T Consensus 269 ~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~--~~~~~~~SpDG~ 340 (427)
T PRK02889 269 VNADGSG-----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGS--YNTSPRISPDGK 340 (427)
T ss_pred EECCCCC-----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCC--CcCceEECCCCC
Confidence 454443 2334445555677899999999887664 4555555 445554322 222222 244588999999
Q ss_pred EEEEecCCC---cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---C--eEEEEcCCC
Q 024185 194 YVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNP 251 (271)
Q Consensus 194 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~ 251 (271)
+++..+.++ .|.+||+.+++...... . .....+.|+|||+.|+.++ | .+.+.+...
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 998776554 69999998877544332 2 2346789999999888775 2 366666643
No 194
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.73 E-value=2.8e-16 Score=129.05 Aligned_cols=193 Identities=15% Similarity=0.112 Sum_probs=153.4
Q ss_pred eeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-ee
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQ 85 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~ 85 (271)
--|..++|.-+-..|.+..++...- .+..+.+.|+..|.|+.+|.--...-. |++++.|+.|+++|....- ++
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kL--LASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKL--LASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhh----hhhhheecccceeEEEeecCchhhhHh--hhhccCCceEEEEecccccchh
Confidence 3466677877777788888876655 445558899999999999854322112 8899999999999985321 11
Q ss_pred EEEecC---------------------------------------------------CcceEEEcCCCCEEEEEecCCeE
Q 024185 86 GILRLR---------------------------------------------------GRPTVAFDQQGLVFAVAMEAGAI 114 (271)
Q Consensus 86 ~~~~~~---------------------------------------------------~~~~~~~~~~~~~l~~~~~d~~i 114 (271)
+++.+| ..+.++..|..+++++++.|..|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 111111 12337888889999999999999
Q ss_pred EEEeCCCCCCCcceEEEec---CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCC
Q 024185 115 KLFDSRSYDKGPFDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
+|||+++++. ...++ +|.+..-.+...|.|.|+++...|.++.++|..+++++.+..+|... |+.+.|.+|
T Consensus 621 rif~i~sgKq----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~--VTG~kF~nD 694 (1080)
T KOG1408|consen 621 RIFDIESGKQ----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA--VTGVKFLND 694 (1080)
T ss_pred EEEeccccce----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh--eeeeeeccc
Confidence 9999999986 44444 45677888899999999999999999999999999999999999887 999999999
Q ss_pred CCEEEEecCCCcEEEEEcCC
Q 024185 192 GQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~ 211 (271)
.+.|++.+.||.|.||.+..
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999853
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=127.26 Aligned_cols=227 Identities=11% Similarity=0.129 Sum_probs=161.3
Q ss_pred cceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEe-eEE----ecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 10 ITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRG-LFL----SACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~----s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
.++.+++.+++..+.++.......... ......-+.. +.. +..|..--. |+.++.||.+.+.+- .++.
T Consensus 24 ~~eei~~~~dDh~~~~~~~~~~~s~~~----~~~p~df~pt~~h~~~rs~~~g~~~d~--~~i~s~DGkf~il~k-~~rV 96 (737)
T KOG1524|consen 24 SNEEIYFVSDDHQIFKWSDVSRDSVEV----AKLPDDFVPTDMHLGGRSSGGGKGSDT--LLICSNDGRFVILNK-SARV 96 (737)
T ss_pred ccceEEEeccCceEEEeecccchhhhh----hhCCcccCCccccccccccCCCCCcce--EEEEcCCceEEEecc-cchh
Confidence 356778888887777776655422111 1111111110 111 111111112 677888999888765 5666
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
.+.+..|. +.+-.|+|||.-|+++++||.|++|.....- ...+.....+|.|++|.|+.+.++.+. .+.+.+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-----RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~I 170 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-----RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISI 170 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-----HHHHhhcCceeEEEEECCCCCceEEec-CCeEEE
Confidence 66677774 4558899999999999999999999965432 233444567899999999988777655 346777
Q ss_pred EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 163 LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
=-+.....+-..+.|.+- |.++.|+|.++.+++|++|-..++||- .|..+..-..|..+|++++|.|+ +.++.+|
T Consensus 171 KpL~~n~k~i~WkAHDGi--iL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 171 KPLAANSKIIRWRAHDGL--VLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred eecccccceeEEeccCcE--EEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee
Confidence 777666666677788865 999999999999999999999999996 57888888889999999999999 7777777
Q ss_pred CeEEEEcCCCCC
Q 024185 242 SVLSFWIPNPSS 253 (271)
Q Consensus 242 ~~v~iw~~~~~~ 253 (271)
+++++=.++.|.
T Consensus 247 nt~R~~~p~~GS 258 (737)
T KOG1524|consen 247 NTARFSSPRVGS 258 (737)
T ss_pred eeeeecCCCccc
Confidence 777755544443
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=5.3e-16 Score=116.03 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=161.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe-cCcceeEEE--
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL-MLASFQGIL-- 88 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~-- 88 (271)
+.+.++..+.++.++...... .......+..|...++++.|+|..+. +++++.|..-++|.. +.++-..++
T Consensus 23 t~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~~vtgvdWap~snr-----Ivtcs~drnayVw~~~~~~~WkptlvL 96 (361)
T KOG1523|consen 23 TQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDKIVTGVDWAPKSNR-----IVTCSHDRNAYVWTQPSGGTWKPTLVL 96 (361)
T ss_pred ceEEeccCCceEEEEEecCCC-CceeceehhhhCcceeEEeecCCCCc-----eeEccCCCCccccccCCCCeeccceeE
Confidence 456777778888888876653 13455778999999999999999988 899999999999998 444433222
Q ss_pred -ecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 89 -RLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 89 -~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
+.. ...++.|+|.++.||+|+....|.+|-.+...--......-+.+...|.+++|+|++-+|++|+.|+..++|..-
T Consensus 97 lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 97 LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 222 367799999999999999999999998876553222222334567889999999999999999999999999752
Q ss_pred -----C-------------CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce-eEEEecCCcceeEE
Q 024185 167 -----G-------------GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVAC 227 (271)
Q Consensus 167 -----~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~ 227 (271)
+ |+....+. ...+++..+.|+|+|+.|+..+.|..+.+-|..... .+.......-+..+
T Consensus 177 IK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls 254 (361)
T KOG1523|consen 177 IKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLS 254 (361)
T ss_pred eeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCcee
Confidence 1 11111121 334679999999999999999999999999976654 33333323356677
Q ss_pred EEEecCCcEEEEe
Q 024185 228 LKWAPRRAMFVAA 240 (271)
Q Consensus 228 ~~~s~~~~~l~~~ 240 (271)
+.|-.+...++.|
T Consensus 255 ~~~ise~~vv~ag 267 (361)
T KOG1523|consen 255 VSWISENSVVAAG 267 (361)
T ss_pred eEeecCCceeecC
Confidence 7776555444443
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.5e-16 Score=125.74 Aligned_cols=207 Identities=14% Similarity=0.134 Sum_probs=156.9
Q ss_pred ecceeEEeeecceeeEEEEeec----cceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc--
Q 024185 9 PITQALLFARQNIILILLESLC----GIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA-- 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~-- 82 (271)
|....++.+..++.+.+|.... ...+...+-.|.+|.++|-|+++++.+.. +.+|+.||+|+.|++...
T Consensus 304 ~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~-----~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 304 PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH-----CYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE-----EEeeccCceeeeeccCCCCC
Confidence 3445566666677777666521 12233456679999999999999999998 889999999999966421
Q ss_pred --------ceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce---------EEEecC---------
Q 024185 83 --------SFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD---------TFLVGG--------- 134 (271)
Q Consensus 83 --------~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~--------- 134 (271)
.....+.+|. ++.+++|+....|++++.||+++.|+........+. ...+..
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 1233456664 566999999999999999999999997654320000 000000
Q ss_pred -----------------------------CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceee
Q 024185 135 -----------------------------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTE 185 (271)
Q Consensus 135 -----------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 185 (271)
....+.-+.++|.+...+++..|+.|+++|..+++.++....|... +++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s--vts 536 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDS--VTS 536 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccce--ecc
Confidence 0033566788888889999999999999999999999988888776 999
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
+++.|+|-+|++++.|+.+++|.+....++.....|.
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999999998888877766664
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.5e-17 Score=138.39 Aligned_cols=198 Identities=13% Similarity=0.100 Sum_probs=154.4
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc--ceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR--PTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
+.+|-++|.|..|...|.+ +++|+.|..++||..+++.++....+|+. +-++.+.+.-++++++.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~-----Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRY-----IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccce-----EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 5688899999999999999 89999999999999999999999999964 4588888888999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC--------------------------------
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-------------------------------- 166 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-------------------------------- 166 (271)
+..+.. ...+.+|++.|++++|+|-. +.+.||++++||.+
T Consensus 261 l~~~~p----vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 261 LPDGAP----VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred cCCCch----HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 999886 66678999999999999943 66778888888876
Q ss_pred ---------------------------------------------------CCeEEEEeecCCCCCceeeEEECCCCC-E
Q 024185 167 ---------------------------------------------------GGEKRCGFSLEPSPNTNTEATFTPDGQ-Y 194 (271)
Q Consensus 167 ---------------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 194 (271)
+|...+.+.+|.. .+..+.++|-.. .
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRI 410 (1113)
T ss_pred cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHh
Confidence 0000111111111 133355555433 3
Q ss_pred EEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 195 VVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
..+++.||...|||+-.|.+++......+.+..-+||+||..++... |.+.|.....++
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 34788999999999999988876643345677889999999888876 888888765544
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=1.2e-15 Score=124.62 Aligned_cols=197 Identities=12% Similarity=0.142 Sum_probs=144.1
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK 124 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 124 (271)
.+..++|.|||..++. ..+..+.+||...|..++++++|. +++++|+.||+++++|+.|..|.+|...-...
T Consensus 14 ci~d~afkPDGsqL~l------AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLIL------AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEE------ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 7888999999997422 345679999999999999999995 77899999999999999999999998653221
Q ss_pred ------CcceEEEecC---------------------------CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 125 ------GPFDTFLVGG---------------------------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 125 ------~~~~~~~~~~---------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
..++...+.. ....+.+++|..||++++.|-.||+|.+-+ .+++..
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek 166 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEK 166 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcc
Confidence 0011111110 114578889999999999999999999987 445544
Q ss_pred EEeecCC-CCCceeeEEECCCC-----CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 172 CGFSLEP-SPNTNTEATFTPDG-----QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 172 ~~~~~~~-~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
-.+.... ...+|.+++|+|.. ..++......++.+|.+ +|+.+..-+.-.....|+++-|+|.+++.|+ +.
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 4444322 22569999999974 36677777777888776 4555553333444567899999999988887 66
Q ss_pred EEEEcCCC
Q 024185 244 LSFWIPNP 251 (271)
Q Consensus 244 v~iw~~~~ 251 (271)
+++|.-+.
T Consensus 246 L~~fTR~G 253 (1081)
T KOG1538|consen 246 LSLFTRDG 253 (1081)
T ss_pred eEEEeecC
Confidence 88886544
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1e-15 Score=126.81 Aligned_cols=172 Identities=18% Similarity=0.188 Sum_probs=117.7
Q ss_pred CceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 71 ALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
+..|.+||.+... .+.+..+. +...+|+|||+.|+.++.+ ..|++||+.+++. .....+.+ ....++|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g---~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRG---HNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCC---ccCceeEC
Confidence 5789999986555 34444433 5669999999999887643 3799999987763 11222333 34468999
Q ss_pred CCCcEEEEEe-cCCeEE--EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCc-eeEEEecC
Q 024185 146 NDGKSMLLTT-TNNNIY--VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTR-NEVACWNG 220 (271)
Q Consensus 146 ~~~~~l~~~~-~d~~i~--~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~ 220 (271)
|||+.|+.++ .+|... +||+.+++. ..+..+.. .+..+.|+|||+.++.++ .+|...+|++... .....+ .
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~--~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAG--NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCC--CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 9999988765 577654 557666654 34443433 367799999999877655 5778888876532 222333 3
Q ss_pred CcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~ 254 (271)
+.. ....|+|||++|+..+ ..+.+||+.+++.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~ 365 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMINGDNVVKQDLTSGST 365 (429)
T ss_pred CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCe
Confidence 433 4678999999998877 6677799988754
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.9e-15 Score=115.88 Aligned_cols=185 Identities=13% Similarity=0.203 Sum_probs=145.5
Q ss_pred hhhhccCceEEEEEecCcc----eeEEEec-CCcceEEEcCCCC-EEEEEecC--CeEEEEeCCCCCCCcceEEEecCC-
Q 024185 65 LVLLTTALEYGIFVLMLAS----FQGILRL-RGRPTVAFDQQGL-VFAVAMEA--GAIKLFDSRSYDKGPFDTFLVGGD- 135 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~~~~~~~~~~~-~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~- 135 (271)
|++|-.+|.+.+|..+.+. .+..+.. .+...+.-++... .+++|+.. ..+.+||+++.+. .+.-+.-
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q----iw~aKNvp 193 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ----IWSAKNVP 193 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee----eeeccCCC
Confidence 6688899999999988433 2333333 3444466666554 55668888 7899999988754 3332221
Q ss_pred --------ccceEEEEEcCC--CcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcE
Q 024185 136 --------TAEVCDIKFSND--GKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTL 204 (271)
Q Consensus 136 --------~~~v~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 204 (271)
+-.++++.|-+. ...|++++.-+.+++||.+.++ ++..+.....+ ++++...|+++++++|..-|.+
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~--is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP--ISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc--ceeeeecCCCcEEEEecccchh
Confidence 134678889887 8889999999999999998754 56666666555 9999999999999999999999
Q ss_pred EEEEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 205 HAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 205 ~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
..+|++.++.+.. +.+..+.|+++..+|.++++++++ ..+||+|+++.+++
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999999998876 888899999999999999999999 77999999996543
No 202
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.2e-15 Score=112.23 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=119.7
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC--CCcEEEEEecCCeEEEEECCC---
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNIYVLDAYG--- 167 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~--- 167 (271)
+.++.|.+-|+++|+++.|++++|||.+......-.......|.+.|..+.|.+ -|+.+|+++.|+++.||.-..
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 577999999999999999999999997655543344556778999999999977 489999999999999997521
Q ss_pred ------CeEEEEeecCCCCCceeeEEECCC--CCEEEEecCCCcEEEEEcCCce--------------------------
Q 024185 168 ------GEKRCGFSLEPSPNTNTEATFTPD--GQYVVSGSGDGTLHAWNINTRN-------------------------- 213 (271)
Q Consensus 168 ------~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-------------------------- 213 (271)
.....++.... ..|+.++|.|. |-.|++++.||.++||+..+.-
T Consensus 96 ~~~~~~Wv~~ttl~Dsr--ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSR--SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccceeEEEEEeecCC--cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 11222333333 45999999886 6688899999999999752200
Q ss_pred -----------------------------------------eEEEecCCcceeEEEEEecC----CcEEEEeCCe-EEEE
Q 024185 214 -----------------------------------------EVACWNGNIGVVACLKWAPR----RAMFVAASSV-LSFW 247 (271)
Q Consensus 214 -----------------------------------------~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~-v~iw 247 (271)
.+.++.+|..+|+.++|.|+ ..+||+++++ |+||
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~ 253 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIF 253 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEE
Confidence 01123467889999999996 3478888844 9999
Q ss_pred cCCCCC
Q 024185 248 IPNPSS 253 (271)
Q Consensus 248 ~~~~~~ 253 (271)
.+...+
T Consensus 254 ~v~~~~ 259 (361)
T KOG2445|consen 254 KVKVAR 259 (361)
T ss_pred EEeecc
Confidence 998643
No 203
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.71 E-value=3.2e-15 Score=120.23 Aligned_cols=181 Identities=10% Similarity=0.129 Sum_probs=149.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC---C--cceEEE------cC--------------CCCEEEEEecCCeEEEEeC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR---G--RPTVAF------DQ--------------QGLVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~---~--~~~~~~------~~--------------~~~~l~~~~~d~~i~i~d~ 119 (271)
+|....||.+++||..+++..+.+... . ..+..| +| |...++-|...|.|.+|+.
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~ 87 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV 87 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence 778899999999999998877776432 1 112233 22 3346778888999999999
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 199 (271)
..++. ...+.-.+|.+.|.++.++.+-..|.+++.|+.+..|+..+++..+.+...... +.+++.+|||+.+++++
T Consensus 88 ~~g~i--t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~--~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 88 AGGEI--TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL--VSSLCISPDGKILLTAS 163 (541)
T ss_pred cCCeE--EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc--cceEEEcCCCCEEEecc
Confidence 99886 334445689999999999999999999999999999999999988888877665 88899999999999887
Q ss_pred CCCcEEEEEcCCceeEEEecCCcceeEEEEEecC-----CcEEEEeC---CeEEEEcCCC
Q 024185 200 GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR-----RAMFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 200 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~---~~v~iw~~~~ 251 (271)
+.|++||+.+++.+..|.+|.++|++++|.-+ |.+++++. ..+.+|-.+.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 47999999999999999999999999999887 77777765 4477787655
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=126.92 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=154.2
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-cC--CcceEEEcC--CCCEEEEEecCCe
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-LR--GRPTVAFDQ--QGLVFAVAMEAGA 113 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~--~~~~~~~~~--~~~~l~~~~~d~~ 113 (271)
..+.+|++.|+++.|+.+|.+ |+||+.|-.+.|||.-..+.+..+. +| .+.++.|-| +.+.+++|..|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~l-----L~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGEL-----LASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecceeecCCCCE-----EeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 348899999999999999999 9999999999999998878777774 45 356688988 4568899999999
Q ss_pred EEEEeCCCCCC------CcceEEEecCCccceEEEEEcCCC-cEEEEEecCCeEEEEECCCCeEE-------EEe-ecCC
Q 024185 114 IKLFDSRSYDK------GPFDTFLVGGDTAEVCDIKFSNDG-KSMLLTTTNNNIYVLDAYGGEKR-------CGF-SLEP 178 (271)
Q Consensus 114 i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~-------~~~-~~~~ 178 (271)
|+++|+...+. ..........|...|..++-.|++ +.+.++++||+++-+|++..... ..+ ..+.
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 99999975221 011234456788999999999988 78999999999999999863211 100 1111
Q ss_pred CCCceeeEEECCCC-CEEEEecCCCcEEEEEcCC--------ce----------eEEEe-cCCc-----------ceeEE
Q 024185 179 SPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINT--------RN----------EVACW-NGNI-----------GVVAC 227 (271)
Q Consensus 179 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~--------~~----------~~~~~-~~~~-----------~~v~~ 227 (271)
.-....++..+|.. .+|+.|+.|-..++||.+. +. ++.-+ ++|- ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 11236778899864 5788999999999999431 11 11111 2221 12567
Q ss_pred EEEecCCc-EEEEeC-CeEEEEcCCCCCCC
Q 024185 228 LKWAPRRA-MFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 228 ~~~s~~~~-~l~~~~-~~v~iw~~~~~~~~ 255 (271)
+.|+|+|. +|++-+ ..|+++|+..++..
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 88999986 555555 66999999877644
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.5e-16 Score=122.89 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=121.7
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
.+++|+++|..+++++.||++++|+...... ......|...|.++.|+|||++|++.+.| ..++|+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 4699999999999999999999999766654 55566789999999999999999999999 899999999977766
Q ss_pred eecCCCCCceeeEEECCCC---CE--EEEecCCCcEEEEEcCCcee------EEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 174 FSLEPSPNTNTEATFTPDG---QY--VVSGSGDGTLHAWNINTRNE------VACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~---~~--l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.......-....+.|+.|+ .+ ++.....+.|..||+...+. .+.+..+ ..|++++.++||++++.|+
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEecc
Confidence 6533333346668888776 32 33334456777777653222 1222223 3599999999999999998
Q ss_pred -CeEEEEcCCCCCCCcCCC
Q 024185 242 -SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 -~~v~iw~~~~~~~~~~~~ 259 (271)
|.|-|++..+-+......
T Consensus 302 dGsVai~~~~~lq~~~~vk 320 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK 320 (398)
T ss_pred CCcEEEEEeceeeeeEeeh
Confidence 999999998866554443
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=1.5e-15 Score=131.23 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=158.2
Q ss_pred EEEEEcccccceEEeeEEecCC-chhhhhhhhhhccCceEEEEEecCc-------ceeEEEe--cCCcceEEEcCCCCEE
Q 024185 36 MIIEFFATSKGIRRGLFLSACL-QLMIALCLVLLTTALEYGIFVLMLA-------SFQGILR--LRGRPTVAFDQQGLVF 105 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~-~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~--~~~~~~~~~~~~~~~l 105 (271)
..+..+..|...+..++.++.. .+ |++|+.||+|++||.+.- +...++. +..+.++.+.+.+..+
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~-----FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSL-----FVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred eEeehhhhccccccceeecCCCCce-----EEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 5677788888888888887766 77 899999999999998632 1222333 3346778899999999
Q ss_pred EEEecCCeEEEEeCCCCCC---CcceEEE--ecCCccceEEEEEcC-CCc-EEEEEecCCeEEEEECCCCeEEEEeecCC
Q 024185 106 AVAMEAGAIKLFDSRSYDK---GPFDTFL--VGGDTAEVCDIKFSN-DGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEP 178 (271)
Q Consensus 106 ~~~~~d~~i~i~d~~~~~~---~~~~~~~--~~~~~~~v~~~~~s~-~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 178 (271)
|+++.||.|++.++..... ...+... .+.....+..-+|.. ++. .++.+...+.|..||.+......+++...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 9999999999999876221 0111111 122222233344444 233 67888889999999999887777776666
Q ss_pred CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CCcceeEEEEEecCC---cEEEEeC----CeEEEEcCC
Q 024185 179 SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAPRR---AMFVAAS----SVLSFWIPN 250 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~---~~l~~~~----~~v~iw~~~ 250 (271)
..+.|++++.+|.+++++.|+..|.+.+||++-+.++..+. ++..++..+..+|-. ...++++ +.|.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 66779999999999999999999999999999988888763 344678888777632 4555543 669999999
Q ss_pred CCCCCcC
Q 024185 251 PSSNSTD 257 (271)
Q Consensus 251 ~~~~~~~ 257 (271)
++.....
T Consensus 1274 ~g~~~~v 1280 (1431)
T KOG1240|consen 1274 TGLRQTV 1280 (1431)
T ss_pred cCcceEE
Confidence 9865443
No 207
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=3.9e-15 Score=109.41 Aligned_cols=155 Identities=22% Similarity=0.327 Sum_probs=107.7
Q ss_pred eeEEecCCchhhhhhhhhh-------ccCceEEEEEec-CcceeEEEec--C-CcceEEEcCCCCEEEEE--ecCCeEEE
Q 024185 50 GLFLSACLQLMIALCLVLL-------TTALEYGIFVLM-LASFQGILRL--R-GRPTVAFDQQGLVFAVA--MEAGAIKL 116 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~-------~~dg~i~iwd~~-~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~--~~d~~i~i 116 (271)
.+.|+|+|+++++ .+.. +.-+...+|.++ .+.....+.. . .+..++|+|+|+.|++. ..++.|.+
T Consensus 10 ~~~W~~~G~~l~~--~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLV--KVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEE--EEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3667777776544 2221 112345566553 2233444432 2 36779999999987665 35679999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||++. +. ...+. ...+..+.|+|+|+++++++. .|.+.+||.++.+.+...... .+..++|+|||+
T Consensus 88 yd~~~-~~----i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr 156 (194)
T PF08662_consen 88 YDVKG-KK----IFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGR 156 (194)
T ss_pred EcCcc-cE----eEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCC
Confidence 99973 22 44443 467889999999999999874 477999999988887766432 277899999999
Q ss_pred EEEEecC------CCcEEEEEcCCceeEEEe
Q 024185 194 YVVSGSG------DGTLHAWNINTRNEVACW 218 (271)
Q Consensus 194 ~l~~~~~------dg~i~iwd~~~~~~~~~~ 218 (271)
+++++.. |+.++||+. +|+.+...
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 9998764 678999998 46666554
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=5.3e-15 Score=113.46 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=156.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccC--ceEEEEEecCcceeEEEe
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTA--LEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~ 89 (271)
..|+.+.++|.+..++...+.........+..+ ..+..+.-++..+.+ +++|+.. ..+.+||+++.+ +.+.
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~I----va~GGke~~n~lkiwdle~~~--qiw~ 188 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYI----VATGGKENINELKIWDLEQSK--QIWS 188 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCce----EecCchhcccceeeeecccce--eeee
Confidence 456777788888888877553222222223333 234446666666664 5579988 899999998884 4444
Q ss_pred cCC---------c----ceEEEcCC--CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE
Q 024185 90 LRG---------R----PTVAFDQQ--GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT 154 (271)
Q Consensus 90 ~~~---------~----~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 154 (271)
... + ..+.|-+. ...|++++.-+.+++||.+.++ .|+..+.+ ...+++++...|+++++++|
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~--~E~~is~~~l~p~gn~Iy~g 265 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFDF--LENPISSTGLTPSGNFIYTG 265 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEecc--ccCcceeeeecCCCcEEEEe
Confidence 332 2 22677776 7889999999999999999655 45555554 46789999999999999999
Q ss_pred ecCCeEEEEECCCCeEEEE-eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 155 TTNNNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 155 ~~d~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
..-|.+..||++.++.... +.+-.+. ++++..+|.++++++++-|..++|+|+++.+++...- -....+++-+.++
T Consensus 266 n~~g~l~~FD~r~~kl~g~~~kg~tGs--irsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCGLKGITGS--IRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cccchhheecccCceeeccccCCccCC--cceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 9999999999999988776 5555544 9999999999999999999999999999977766543 2345677777665
Q ss_pred Cc
Q 024185 234 RA 235 (271)
Q Consensus 234 ~~ 235 (271)
-+
T Consensus 343 ~n 344 (412)
T KOG3881|consen 343 VN 344 (412)
T ss_pred cc
Confidence 43
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=8.3e-15 Score=121.14 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=119.9
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCc--eEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecC-C--eEEEEeCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTAL--EYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEA-G--AIKLFDSR 120 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d-~--~i~i~d~~ 120 (271)
......|+|+|+.++. +.+.+| .|++||+++++..+....+ ......|+|||+.|+..+.+ + .|+.+|+.
T Consensus 244 ~~~~~~~SPDG~~La~----~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 244 HNGAPAFSPDGSKLAF----ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CcCCeEECCCCCEEEE----EEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence 3446889999998433 333344 5888999888765554443 34558999999988877654 3 45555776
Q ss_pred CCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 121 SYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
+++. ..+..+........|+|||++++..+.+ ..|.+||+.+++.. .+.... ......|+|||++++.
T Consensus 320 ~g~~-----~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~---~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 320 GGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF---LDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCe-----EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC---CCCCceECCCCCEEEE
Confidence 6542 2222233446678999999999877653 45889999887643 333221 1345889999999998
Q ss_pred ecCCCc---EEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 198 GSGDGT---LHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 198 ~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
++.++. +.++++ +++....+.+|.+.+...+|+|-
T Consensus 391 ~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 391 SSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 887754 677777 56667778788888999999973
No 210
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.69 E-value=3e-14 Score=118.12 Aligned_cols=200 Identities=21% Similarity=0.273 Sum_probs=133.5
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|+|+|+.+++ .........|++||+.+++......... ...++|+||++.|+.. +.++ .|++
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~--~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAY--VSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred eecCCCceecccCCCCCCEEEE--EEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 3345556778899999998544 1122233689999998886544333322 3458999999977654 3333 6889
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+........|+|||+.|+..+.. ..|+++|+.+++.. .+..+.. ....+.|+|+|+
T Consensus 263 ~d~~~~~~-----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~--~~~~~~~spdg~ 334 (417)
T TIGR02800 263 MDLDGKQL-----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG--YNASPSWSPDGD 334 (417)
T ss_pred EECCCCCE-----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC--CccCeEECCCCC
Confidence 99887653 3333444455677999999988876643 36888898877643 3332322 256689999999
Q ss_pred EEEEecCCC---cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCC
Q 024185 194 YVVSGSGDG---TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPS 252 (271)
Q Consensus 194 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~ 252 (271)
+++.++.++ .|.+||+.++.. ..+... .......|+|||++|+..+ ..+.+.+....
T Consensus 335 ~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 335 LIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred EEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 999887765 789999887554 333322 2345678999999888775 23666665543
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3.6e-14 Score=106.26 Aligned_cols=179 Identities=10% Similarity=0.163 Sum_probs=134.2
Q ss_pred CceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCC-CCCcceEEEecCCccceEEEEEcCCC
Q 024185 71 ALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSY-DKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
-..+.|||=...+++..+... ++..+.+.++ +|++.- .+.|++|...+. +. ...+.....+....+++-+.+.
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~--l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL--LHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh--eeeeecccCCCceEeecCCCCc
Confidence 357999997777777777654 4666777654 466665 578999998743 32 3333333333445555544455
Q ss_pred cEEEEEe-cCCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCCCEEEEecCCCc-EEEEEcCCceeEEEecC--Cc
Q 024185 149 KSMLLTT-TNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGT-LHAWNINTRNEVACWNG--NI 222 (271)
Q Consensus 149 ~~l~~~~-~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~ 222 (271)
..|+.-+ .-|.|++-|+...+. ...+..|... |.+++++-+|..+|+++..|+ |+|||..+|+.+++++. ..
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~--Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD--IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR 226 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCc--eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence 5666544 479999999987665 4667888876 999999999999999999886 89999999999999853 24
Q ss_pred ceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 223 GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
..|.+++|||++.+|+++| |+++||.++......
T Consensus 227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~ 262 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTE 262 (346)
T ss_pred heEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCc
Confidence 5799999999999999999 999999997755433
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8e-15 Score=122.79 Aligned_cols=237 Identities=10% Similarity=0.123 Sum_probs=165.1
Q ss_pred ceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec
Q 024185 11 TQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL 90 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 90 (271)
.++.+|...+..+..+...++ ..++.+..|...+..+.+.|....... +.+++.||.|++||...+..++++..
T Consensus 27 D~k~l~~~~~~~V~VyS~~Tg----~~i~~l~~~~a~l~s~~~~~~~~~~~~--~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 27 DAKFLFLCTGNFVKVYSTATG----ECITSLEDHTAPLTSVIVLPSSENANY--LIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred CCcEEEEeeCCEEEEEecchH----hhhhhcccccCccceeeecCCCccceE--EEEEecCccEEEecCCCcEEEEEEec
Confidence 356777777888888888888 445578999999999999887764323 66899999999999988877666532
Q ss_pred CC-c-----------------------------------------------------------ceEEEcCCCCEEEEEec
Q 024185 91 RG-R-----------------------------------------------------------PTVAFDQQGLVFAVAME 110 (271)
Q Consensus 91 ~~-~-----------------------------------------------------------~~~~~~~~~~~l~~~~~ 110 (271)
+. + .++..++.|.+.+..-
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~- 179 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH- 179 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-
Confidence 21 0 0122222222222222
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC--Ce--EEEEeecCCCCCceeeE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG--GE--KRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~--~~--~~~~~~~~~~~~~v~~~ 186 (271)
+..+.+|+.............-..|...+++.++||++++++++..||+|.+|.--. +. ..+.+.-|... |.++
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~--V~~L 257 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE--VNSL 257 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc--ccee
Confidence 334556665543310011111224666789999999999999999999999996432 21 23345455544 9999
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
.|+++|.+|++|+..+.+.+|.+.+++ .+-++.-.++|..+.+|||+.+.+... +.|.+-...+......
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 999999999999999999999999988 455666778999999999998765553 7788877755544433
No 213
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5.5e-14 Score=116.91 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=132.2
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+..+...+....|+|+|+.+++ .........|.+||+++++........+ ....+|+|||++|+.. ..+| .|++
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~--~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAY--VSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EecCCCceeeeeECCCCCEEEE--EEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 3345566788999999998433 1111123468899998887654333332 3358999999988754 4444 6888
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C--CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
||+.+++. ..+..+........|+|||+.++..+. + ..|+++|+.+++..+. ..... ......|+|||+
T Consensus 272 ~d~~~~~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~--~~~~~~~Spdg~ 343 (430)
T PRK00178 272 MDLASRQL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGN--YNARPRLSADGK 343 (430)
T ss_pred EECCCCCe-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCC--CccceEECCCCC
Confidence 89988763 234445555677899999998877664 3 3688888887765332 22221 134578999999
Q ss_pred EEEEecCC-C--cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCC
Q 024185 194 YVVSGSGD-G--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSS 253 (271)
Q Consensus 194 ~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~ 253 (271)
+++..+.+ + .|.++|+.+++... +.. ........|+|||++++.++ ..+.+++.+.+.
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 99877653 3 58889998876533 321 22234568999999887765 347777776543
No 214
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.5e-14 Score=116.47 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=127.5
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhcc--CceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEec-CC--e--EE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTT--ALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAME-AG--A--IK 115 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-d~--~--i~ 115 (271)
.......-.|||||+.+.. +..... ...|.+.++.+++..+.....+ ....+|+|||+.|+..+. +| . +.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~--~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPY--LYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCCCcccceEccCCCceEE--EEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 4445566899999975221 112223 3467777888877554444333 234899999998887653 22 3 34
Q ss_pred EEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCe--EEEEECCC-CeEEEEeecCCCCCceeeEEECCC
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNN--IYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
.|++..+..... ......+.+.....+|+|||+.|+..+. +|. |+++++.. +.....+..... .+....|+||
T Consensus 261 ~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--~~~~p~wSPD 337 (428)
T PRK01029 261 SFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--NSSCPAWSPD 337 (428)
T ss_pred EeecccCCCCcc-eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--CccceeECCC
Confidence 467665321111 1112222234467899999998887663 564 44445532 222333433332 2567899999
Q ss_pred CCEEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCCC
Q 024185 192 GQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNS 255 (271)
Q Consensus 192 ~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~~ 255 (271)
|++|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+... ..+.++|+.+++..
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 9998876543 369999998887654333 334567899999999877542 45899999877653
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=7.7e-14 Score=112.42 Aligned_cols=231 Identities=15% Similarity=0.174 Sum_probs=147.8
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC-cceE
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG-RPTV 96 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~ 96 (271)
..++.+..++..+. ..+..+......-..+.++|||++ +..++.||.|.++|+.+++.+++++... ...+
T Consensus 13 ~~~~~v~viD~~t~----~~~~~i~~~~~~h~~~~~s~Dgr~-----~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 13 RGSGSVAVIDGATN----KVVARIPTGGAPHAGLKFSPDGRY-----LYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GGGTEEEEEETTT-----SEEEEEE-STTEEEEEE-TT-SSE-----EEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEECCCC----eEEEEEcCCCCceeEEEecCCCCE-----EEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 45788888887665 333445544444444779999998 5556789999999999999999997665 4559
Q ss_pred EEcCCCCEEEEEe-cCCeEEEEeCCCCCCCcceEEEe----------------cCCc-----------------------
Q 024185 97 AFDQQGLVFAVAM-EAGAIKLFDSRSYDKGPFDTFLV----------------GGDT----------------------- 136 (271)
Q Consensus 97 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~----------------~~~~----------------------- 136 (271)
++++||++++++. ..+.+.++|.++.+. +..... ..|.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEP--VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--E--EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccc--eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9999999998874 678999999887543 111100 0000
Q ss_pred ----------cceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeEEEEeecCCC--------------------------
Q 024185 137 ----------AEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPS-------------------------- 179 (271)
Q Consensus 137 ----------~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~-------------------------- 179 (271)
.......|+|++++++.+ ..+..+-++|..+++.+..+.....
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 223556789999987765 4466888888887765443321000
Q ss_pred --------------------------CCceeeEEECCCCCEEEEe----cCCCcEEEEEcCCceeEEEecCCc-ceeEEE
Q 024185 180 --------------------------PNTNTEATFTPDGQYVVSG----SGDGTLHAWNINTRNEVACWNGNI-GVVACL 228 (271)
Q Consensus 180 --------------------------~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~ 228 (271)
.+.-..+..+|+++++.+. ...++|.++|.++.+.+..+.... ..+..+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 0011235668999999887 345799999999998888875322 258899
Q ss_pred EEecCCcEEEEeC---C-eEEEEcCCCCCCCcCCC
Q 024185 229 KWAPRRAMFVAAS---S-VLSFWIPNPSSNSTDES 259 (271)
Q Consensus 229 ~~s~~~~~l~~~~---~-~v~iw~~~~~~~~~~~~ 259 (271)
.|++||+.+..+. + .|.+||..+.+......
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999999776664 4 79999999988766544
No 216
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=9.5e-16 Score=123.44 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=155.0
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-C-CcceEEEcCCCCEEEEEecCCeEEEEeC
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-R-GRPTVAFDQQGLVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 119 (271)
-.|...+..+.|+..|.+++. +...+....|.|.++.....+.-|+. + .+.++.|+|...+|++++. ..|++||+
T Consensus 518 I~~~k~i~~vtWHrkGDYlat--V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL 594 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLAT--VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDL 594 (733)
T ss_pred EecCCccceeeeecCCceEEE--eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEeh
Confidence 346677888999999999655 34445567889999987776655533 2 3566999999999998884 68999999
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
...+. ...+......|..++.+|.|..|+.++.|+.+..+|+.-. ++.+++..|... +++++|++.=.++++|
T Consensus 595 ~kqel----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a--vr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 595 SKQEL----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA--VRSVAFHKRYPLFASG 668 (733)
T ss_pred hHHHH----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh--hhhhhhccccceeeee
Confidence 87554 3333344567999999999999999999999999999754 556667777765 8999999999999999
Q ss_pred cCCCcEEEEEcC------Cc---eeEEEecCCcce----eEEEEEecCCcEEEEeC--CeEEEE
Q 024185 199 SGDGTLHAWNIN------TR---NEVACWNGNIGV----VACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 199 ~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
+.||++.|+.-. .+ -+++.+.+|... |....|+|...+|++++ |+|++|
T Consensus 669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999999998532 12 235667888654 88899999999999988 789998
No 217
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=7e-14 Score=117.27 Aligned_cols=239 Identities=11% Similarity=0.113 Sum_probs=156.9
Q ss_pred Eeeecc-eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 6 FALPIT-QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 6 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
+++-.+ ..+..+..+|.+..|.......+....+.++-|...|.+++|+++|.+ |.||+..|.+.+|.+++++
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~-----LlSGG~E~VLv~Wq~~T~~- 284 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY-----LLSGGREGVLVLWQLETGK- 284 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce-----EeecccceEEEEEeecCCC-
Confidence 444344 445555678999988887743444556778899999999999999999 9999999999999999998
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC-------cceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG-------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
.+-++.-+ +..+.++||+.+.+....|..|.+..+.+.+.+ +.....-....+-.+.++++|.-+.++..+
T Consensus 285 kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~ 364 (792)
T KOG1963|consen 285 KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG 364 (792)
T ss_pred cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence 44444333 455999999999999999999999887543320 000000001123344555666444455555
Q ss_pred cCCeEEEEECCCCeEEEEee------------------------------------------------------------
Q 024185 156 TNNNIYVLDAYGGEKRCGFS------------------------------------------------------------ 175 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~------------------------------------------------------------ 175 (271)
..|.|.+||+-+.+.+..+.
T Consensus 365 ~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~ 444 (792)
T KOG1963|consen 365 HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF 444 (792)
T ss_pred CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee
Confidence 55666666654332222211
Q ss_pred --------cCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCce----------eEEEecCCcceeEEEEEecCCcE
Q 024185 176 --------LEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRN----------EVACWNGNIGVVACLKWAPRRAM 236 (271)
Q Consensus 176 --------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~ 236 (271)
.|.. ..+..+..+|.. ...++++.||.+++|-+...+ +...-.-|..++++++|+.||..
T Consensus 445 ~L~T~I~~PH~~-~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl 523 (792)
T KOG1963|consen 445 ILNTKINNPHGN-AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL 523 (792)
T ss_pred EEEEEEecCCCc-eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE
Confidence 1111 111112223332 378889999999999883321 22222237788999999999998
Q ss_pred EEEeC-CeEEEEcCCC
Q 024185 237 FVAAS-SVLSFWIPNP 251 (271)
Q Consensus 237 l~~~~-~~v~iw~~~~ 251 (271)
|+.+- +.|.+||..+
T Consensus 524 la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 524 LAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecCCEEEEecCCC
Confidence 88876 8899999988
No 218
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.9e-15 Score=114.56 Aligned_cols=209 Identities=11% Similarity=0.082 Sum_probs=153.3
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC------cceeEEEecC---CcceEEEcCCCCEEEEEe
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML------ASFQGILRLR---GRPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 109 (271)
+.+.+|.+.|+.+.||.++++ |++|+.|..+++|+++. .++++....| .+.|++|...++++++|.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~-----L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRF-----LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhhhccccceeeeccCCeE-----EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 345689999999999999999 99999999999999863 3455444322 467799999999999999
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEE
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~ 188 (271)
.+++|...|+++.+. +..+.-....+.|..+..+|-.+.|++.+.++.|.+||.+..+ ....+.....+.....+.|
T Consensus 125 ~~~~VI~HDiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred CcceeEeeeccccee--eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 999999999998874 2222223334589999999999999999999999999998765 2222222233344677899
Q ss_pred CCCCC-EEEEecCCCcEEEEEcCCcee-EEEe------cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 189 TPDGQ-YVVSGSGDGTLHAWNINTRNE-VACW------NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 189 ~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~------~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+|... +|++.+..+-+.+||.+.... +... +.....-.+..|+|+|+.|.+-- ..-.+||+.+.++
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 99754 667778888899999876432 2221 11111225678999999888775 3356777776544
No 219
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=3e-14 Score=121.83 Aligned_cols=237 Identities=13% Similarity=0.136 Sum_probs=157.7
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccc---cceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEe-cCc-
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATS---KGIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVL-MLA- 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~-~~~- 82 (271)
|....++.+..+-.+..++...+ ..+..|..+ ...|+.+.+-.... -+ +++++.||.|+||+- .++
T Consensus 1074 pf~p~i~~ad~r~~i~vwd~e~~----~~l~~F~n~~~~~t~Vs~l~liNe~D~aL----lLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1074 PFEPQIAAADDRERIRVWDWEKG----RLLNGFDNGAFPDTRVSDLELINEQDDAL----LLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCCceeEEcCCcceEEEEecccC----ceeccccCCCCCCCccceeeeecccchhh----eeeeccCceEEEeccccccc
Confidence 44444444444556666665555 333334333 34566666654332 22 779999999999953 232
Q ss_pred ---ceeEEE---ecC-----C-cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCc
Q 024185 83 ---SFQGIL---RLR-----G-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGK 149 (271)
Q Consensus 83 ---~~~~~~---~~~-----~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 149 (271)
+.+.-. .+. + ...+.|.....+|+++++-..|+|||...... .....+ +....++++.-+. .|+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--~~diP~-~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--VADIPY-GSSTLVTALSADLVHGN 1222 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee--Eeeccc-CCCccceeecccccCCc
Confidence 222222 111 1 23388988888888888788999999987664 222222 2345566665443 478
Q ss_pred EEEEEecCCeEEEEECCCCe---EEEEeecCCCCCceeeEEECCCCCE-EEEecCCCcEEEEEcCCcee--EEEecCCc-
Q 024185 150 SMLLTTTNNNIYVLDAYGGE---KRCGFSLEPSPNTNTEATFTPDGQY-VVSGSGDGTLHAWNINTRNE--VACWNGNI- 222 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~--~~~~~~~~- 222 (271)
.+++|..||.+++||.+... .+...+.|.....|..+.+.+.|-. +++|+.+|.|++||++.... ...+..|.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 99999999999999987643 3455666665555888999887654 99999999999999987422 12222332
Q ss_pred --ceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCc
Q 024185 223 --GVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNST 256 (271)
Q Consensus 223 --~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~ 256 (271)
+..+++..+++...+|+|+ +.|+||++....+..
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNI 1339 (1387)
T ss_pred cCccceeeeeccCCCeeeecCcceEEEEecChhhhcc
Confidence 3589999999999999999 889999998765543
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=1e-15 Score=119.83 Aligned_cols=218 Identities=11% Similarity=0.111 Sum_probs=169.6
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
.+++++...|.+-.++..++...+. +. -...|..+.|-.+.++ ++......+++||- .|..+..+..+
T Consensus 142 rhlllgGrKGHlAa~Dw~t~~L~~E----i~-v~Etv~Dv~~LHneq~------~AVAQK~y~yvYD~-~GtElHClk~~ 209 (545)
T KOG1272|consen 142 RHLLLGGRKGHLAAFDWVTKKLHFE----IN-VMETVRDVTFLHNEQF------FAVAQKKYVYVYDN-NGTELHCLKRH 209 (545)
T ss_pred cEEEecCCccceeeeecccceeeee----ee-hhhhhhhhhhhcchHH------HHhhhhceEEEecC-CCcEEeehhhc
Confidence 4677777777777777776643322 21 2334555666666665 34467788999997 45556666555
Q ss_pred -CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 92 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
.+..+.|-|..=+|++++..|.++.-|+.+++. ...+....+.+..++-+|-...+-+|..+|+|.+|.....++
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl----Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL----VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhh----hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 466799999998999999999999999999987 444444567888899999888888999999999999998998
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeCCeEEEEc
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWI 248 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~ 248 (271)
+..+..|.++ |.++++.++|+|+++.+.|..++|||++.-..+.++.. ..+...+++|..|.+.++-+..+.||.
T Consensus 286 LvKiLcH~g~--V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 286 LVKILCHRGP--VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred HHHHHhcCCC--cceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence 8888888877 99999999999999999999999999998887777654 445688999977654444446799995
No 221
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=8.9e-14 Score=115.53 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=127.5
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhcc--CceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTT--ALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
.....+....|+|+|+.++. +... ...|++||+.+++........+ ....+|+|||+.|+.. +.+| .|++
T Consensus 215 ~~~~~~~~p~wSPDG~~La~----~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAY----VSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred cCCCcccCceECCCCCEEEE----EEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34556778999999998433 2222 2368888998877543332222 2358999999988764 5555 4888
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C--CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
+|+.+++. ..+..+.......+|+|||+.++..+. + ..|+++|+.+++... +...... ....+|+|||+
T Consensus 291 ~dl~tg~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~--~~~~~~SpDG~ 362 (448)
T PRK04792 291 VDIATKAL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ--NLGGSITPDGR 362 (448)
T ss_pred EECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC--CcCeeECCCCC
Confidence 88887663 334445556678899999998877664 3 357777887776543 2222221 34478999999
Q ss_pred EEEEecC-CC--cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC---C--eEEEEcCCCC
Q 024185 194 YVVSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPS 252 (271)
Q Consensus 194 ~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~~ 252 (271)
+++..+. ++ .|.++|+.+++... +... .......|+|||+.|+..+ + .+.+++.+..
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9887655 33 46667887776533 3222 1223568999999887754 2 3777887544
No 222
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=1.2e-15 Score=111.33 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=110.3
Q ss_pred hhhhccCceEEEEEecCcceeEEE----------ecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCC--CCCcceEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGIL----------RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSY--DKGPFDTF 130 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~ 130 (271)
++.|-++|.+.+||+.++..+-.+ ..|. +..+.+.+.-..=++|+.+..+..|.++.. .+......
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 678899999999999987544333 2232 344666655555567777778888887643 32112233
Q ss_pred EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 131 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 131 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
.++ ...+..+..-||++.+|+++.|++|++|+.++.+++..++.|... |.+++|+|+.+.+|+++.|++|.+|++
T Consensus 248 ~lk--npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag--vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG--VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Eec--CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc--eeEEEeCCCCchhhhccCCceEEeeec
Confidence 333 356889999999999999999999999999999999999988865 999999999999999999999999986
No 223
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=3.2e-14 Score=105.42 Aligned_cols=195 Identities=12% Similarity=0.159 Sum_probs=140.4
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce---eEEEecC--CcceEEEcCCC-CEEEEEecCCeEEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF---QGILRLR--GRPTVAFDQQG-LVFAVAMEAGAIKLF 117 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~--~~~~~~~~~~~-~~l~~~~~d~~i~i~ 117 (271)
+..+.++..|+.-...+ +.+++-|.+..|||++++.. ...+-.| ++.-++|...+ +.||+.+.||.++++
T Consensus 149 ~~aPlTSFDWne~dp~~----igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNL----IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred cCCcccccccccCCcce----eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence 34466667777655554 55889999999999998732 3344444 56669999866 578899999999999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEec-CCeEEEEECCCC-eEEEEeecCCCCCceeeEEECCC-CC
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTT-NNNIYVLDAYGG-EKRCGFSLEPSPNTNTEATFTPD-GQ 193 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~ 193 (271)
|++..+.. .....-.....+...++|++ |-+++|+-.. ...|.+.|+|.. .++.++..|... |..++|.|. +.
T Consensus 225 DLR~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~--VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 225 DLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS--VNGIAWAPHSSS 301 (364)
T ss_pred Eecccccc-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc--ccceEecCCCCc
Confidence 99986641 11122122246788899998 5567776554 457999999864 567778888876 999999997 56
Q ss_pred EEEEecCCCcEEEEEcCCcee------EEEecCCcceeEEEEEec-CCcEEEEeC-CeEEE
Q 024185 194 YVVSGSGDGTLHAWNINTRNE------VACWNGNIGVVACLKWAP-RRAMFVAAS-SVLSF 246 (271)
Q Consensus 194 ~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~v~i 246 (271)
.+.++++|..+.+||+.+.-. +..+. -.+.|+.+.|++ .+.+++.+. +++.+
T Consensus 302 hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 302 HICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred eeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 889999999999999975221 22223 356799999997 567888887 44443
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1.4e-13 Score=103.08 Aligned_cols=176 Identities=12% Similarity=0.193 Sum_probs=130.2
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEecCC--cceEE
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRLRG--RPTVA 97 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~~~~ 97 (271)
..+..||.... ..+..+ .....|..+.+.++.- ..-..+.|++|... +.+.+..+.... ...++
T Consensus 75 NkviIWDD~k~----~~i~el-~f~~~I~~V~l~r~ri--------Vvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKE----RCIIEL-SFNSEIKAVKLRRDRI--------VVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccC----cEEEEE-EeccceeeEEEcCCeE--------EEEecCeEEEEEcCCChhheeeeecccCCCceEe
Confidence 45666764433 111112 1245677777877633 22457789999987 455666664432 12355
Q ss_pred EcCC--CCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCe-EEEEECCCCeEEEE
Q 024185 98 FDQQ--GLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN-IYVLDAYGGEKRCG 173 (271)
Q Consensus 98 ~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~~~d~~~~~~~~~ 173 (271)
..|. ..+||.- -.-|.|++-|+...+.. ....+.+|...|.|++.+.+|..+|++|..|+ |+|||..+|+.+..
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 5553 3455543 45589999999876642 24567799999999999999999999999988 89999999999999
Q ss_pred eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
+........+.+++|||++.+|+++++.|+++|+.++.
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 98777778899999999999999999999999998865
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.4e-14 Score=115.00 Aligned_cols=208 Identities=12% Similarity=0.147 Sum_probs=154.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee----------------------------EEEecCC---
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ----------------------------GILRLRG--- 92 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------------------------~~~~~~~--- 92 (271)
+...-+.+..+|||+++ +++|...-.|++||+.+-... +.+..|.
T Consensus 50 ~p~ast~ik~s~DGqY~----lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYL----LATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CccccceeEecCCCcEE----EEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 34456668999999996 679999999999998643110 0111110
Q ss_pred ------cce----EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE
Q 024185 93 ------RPT----VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV 162 (271)
Q Consensus 93 ------~~~----~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 162 (271)
++. ++++.-.--|+.++....|+-++++.+.. ...+....+.+.++..++-..+|++|+.+|.+..
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCccceEEecccCceEEE
Confidence 111 34433232355555567899999998875 3334444588999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCC---------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CCcceeEEEEEec
Q 024185 163 LDAYGGEKRCGFSLEPS---------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIGVVACLKWAP 232 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~ 232 (271)
||.++...+.++..... ...|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +...+|..+.|.+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 99998776666543322 1458999999999999999999999999999988876543 3345789999977
Q ss_pred C--CcEEEEeC-CeEEEEcCCCCCCCcCCC
Q 024185 233 R--RAMFVAAS-SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 233 ~--~~~l~~~~-~~v~iw~~~~~~~~~~~~ 259 (271)
. ++.+++.. ..++|||-.+++.....+
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeecc
Confidence 5 66888888 779999999998766554
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=6.3e-15 Score=117.40 Aligned_cols=187 Identities=18% Similarity=0.302 Sum_probs=128.6
Q ss_pred CceEEEEEecCccee------EEEecCCcceEEE-----cCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccce
Q 024185 71 ALEYGIFVLMLASFQ------GILRLRGRPTVAF-----DQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV 139 (271)
Q Consensus 71 dg~i~iwd~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v 139 (271)
...+++|+.+.+... ..+.+.+..|-+| .|.+--+.+|-.-|.+.+.|....+...+......-.+..|
T Consensus 143 g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsv 222 (636)
T KOG2394|consen 143 GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSV 222 (636)
T ss_pred CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccce
Confidence 345777877643211 1233334444444 34566688888889999999876432100011111123689
Q ss_pred EEEEEcCC-CcEEEEEecCCeEEEEECCC--------------CeEEE--EeecC----------CCCCceeeEEECCCC
Q 024185 140 CDIKFSND-GKSMLLTTTNNNIYVLDAYG--------------GEKRC--GFSLE----------PSPNTNTEATFTPDG 192 (271)
Q Consensus 140 ~~~~~s~~-~~~l~~~~~d~~i~~~d~~~--------------~~~~~--~~~~~----------~~~~~v~~~~~~~~~ 192 (271)
+|++|-|. ...++++-.+|.+++||... +.... +-+.+ .....+..++|+|||
T Consensus 223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG 302 (636)
T KOG2394|consen 223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG 302 (636)
T ss_pred EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC
Confidence 99999994 44566677899999997531 11111 10111 111358889999999
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~ 257 (271)
++||+.+.||.++|+|..+.+.+..++..-+...|++|||||+++++|+ .-|.||.+..+++...
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 9999999999999999999998888877778899999999999999999 4499999998877654
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.7e-13 Score=113.95 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=120.2
Q ss_pred CceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEec---CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 71 ALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
...|.++|.+.... +.+..+ .+...+|+|||+.|+..+. +..|++||+.+++. ..+..+.+.+...+|+
T Consensus 181 ~~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 181 IKRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----ELVGNFPGMTFAPRFS 254 (435)
T ss_pred ceEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----EEeecCCCcccCcEEC
Confidence 34788888855444 344333 3556999999999888753 46899999988763 2344456677889999
Q ss_pred CCCcEEEE-EecCC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEec
Q 024185 146 NDGKSMLL-TTTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWN 219 (271)
Q Consensus 146 ~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~ 219 (271)
|||+.|+. .+.++ .|++||+.+++.. .+..+.. ......|+|||++++..+. +| .|+++|+..++. ..+.
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt 330 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRIS 330 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEee
Confidence 99998764 44454 4888898877653 3443332 2566899999999887664 33 688889876554 3343
Q ss_pred CCcceeEEEEEecCCcEEEEeC---C--eEEEEcCCCCC
Q 024185 220 GNIGVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSS 253 (271)
Q Consensus 220 ~~~~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~~~ 253 (271)
.+.+.+....|+|||+.|+..+ + .+.+||+.++.
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 3445567789999999988764 2 48888876543
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.1e-13 Score=114.99 Aligned_cols=205 Identities=17% Similarity=0.205 Sum_probs=129.7
Q ss_pred ecceeEEeeec---ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCc--eEEEEEecCcc
Q 024185 9 PITQALLFARQ---NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTAL--EYGIFVLMLAS 83 (271)
Q Consensus 9 ~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 83 (271)
|..+.+++... +..+..++...+.. .. +....+......|+|+|+.+++ +.+.+| .|++||+.+++
T Consensus 213 pDg~~la~~s~~~~~~~l~~~dl~~g~~--~~---l~~~~g~~~~~~~SpDG~~l~~----~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 213 PDGKKLAYVSFERGRSAIYVQDLATGQR--EL---VASFRGINGAPSFSPDGRRLAL----TLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCCE--EE---eccCCCCccCceECCCCCEEEE----EEeCCCCceEEEEECCCCC
Confidence 34455665532 23455566544421 11 2233344556899999997433 334444 69999998887
Q ss_pred eeEEEecCC-cceEEEcCCCCEEEEEec-CC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-
Q 024185 84 FQGILRLRG-RPTVAFDQQGLVFAVAME-AG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN- 158 (271)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~- 158 (271)
..+...... ....+|+|||++|+.++. +| .|+++|+.+++. ..... +......++|+|||++++..+.++
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTF--QGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEeec--CCCCccCEEECCCCCEEEEEECCCC
Confidence 544333222 244899999998887764 34 477777766553 22222 223455789999999998876433
Q ss_pred --eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC---CcEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 159 --NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 159 --~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
.|.+||+.+++.. .+... . ....+.|+|||++++..+.+ +.|.++++. +.....+..+.+.+..++|+|
T Consensus 359 ~~~I~v~d~~~g~~~-~Lt~~-~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 359 QYRIAVMDLSTGSVR-TLTPG-S--LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceeEEEEECCCCCeE-ECCCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 6999999887754 33322 1 24457999999988876653 458888884 455666665666778888887
No 229
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=9.5e-14 Score=115.43 Aligned_cols=223 Identities=16% Similarity=0.157 Sum_probs=153.5
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce--eEEE----ecCCcc
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF--QGIL----RLRGRP 94 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~~~~~ 94 (271)
+.+.+|+.... ..+.. .-.....+.++.|+|....+ ++.|..+|.|.+||++.+.. ...+ ..|..+
T Consensus 222 ~~~~vW~~~~p-~~Pe~---~~~~~s~v~~~~f~p~~p~l----l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPEL---VLESPSEVTCLKFCPFDPNL----LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred ceEEEEecCCC-CCceE---EEecCCceeEEEeccCCcce----EEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 35666666555 22221 22345678999999988775 66999999999999987764 2222 334444
Q ss_pred e--EEEcCCC--CEEEEEecCCeEEEEeCCCCCCCcceEEEec---------CCccceEEEEEcC-CCcEEEEEecCCeE
Q 024185 95 T--VAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG---------GDTAEVCDIKFSN-DGKSMLLTTTNNNI 160 (271)
Q Consensus 95 ~--~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~~d~~i 160 (271)
+ +.|..+. .-+++++.||.|..|+++.... |.....+. .....+++++|.+ +...++.|+.+|.|
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeecccccc-chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 4 6675544 4499999999999998875432 11111110 1224688999998 56778999999998
Q ss_pred EEEECCCCeE--------EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC-CceeEEEecCCcceeEEEEEe
Q 024185 161 YVLDAYGGEK--------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRNEVACWNGNIGVVACLKWA 231 (271)
Q Consensus 161 ~~~d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s 231 (271)
.--+....+. ...+..|.+ .+..+.++|-+..++..+.|-+++||... ...++..+..+...+++++||
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g--~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIG--PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred EEEeccCCcccccccccccccccccCc--ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence 8744332211 223334444 49999999987766655559999999988 677788887788889999999
Q ss_pred cCCc-EEEEeC--CeEEEEcCCCCCC
Q 024185 232 PRRA-MFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 232 ~~~~-~l~~~~--~~v~iw~~~~~~~ 254 (271)
|... .++++. |.+.+||+.....
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhcccc
Confidence 9765 555665 9999999966543
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.3e-13 Score=114.14 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=111.8
Q ss_pred ceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 72 LEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
..+.++|.+........... .+...+|+|||+.|+..+.+ ..|++||+.+++. ..+....+.....+|+||
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----RVVANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----EEeecCCCCccceEECCC
Confidence 45667776433323222222 34568999999999887643 3699999988763 223333455678999999
Q ss_pred CcEEEE-EecCCeEEEE--ECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEc--CCceeEEEecCC
Q 024185 148 GKSMLL-TTTNNNIYVL--DAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNI--NTRNEVACWNGN 221 (271)
Q Consensus 148 ~~~l~~-~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~ 221 (271)
|+.|+. .+.++...+| |+..++ ...+..+.. ......|+|||++++..+. +|...+|.+ .+++... +..+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~ 326 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT 326 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC
Confidence 998875 5667765555 555444 344443332 2556899999998886654 456666654 4444322 2222
Q ss_pred cceeEEEEEecCCcEEEEeC--C---eEEEEcCCCCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSNS 255 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~---~v~iw~~~~~~~~ 255 (271)
.......+|+|||++++..+ + .|.+||+.+++..
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 23345688999999988765 2 5999999877643
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=8e-13 Score=106.57 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=130.3
Q ss_pred hhhccCceEEEEEecCcceeEEEecCC-cce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 66 VLLTTALEYGIFVLMLASFQGILRLRG-RPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 66 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
++-..++.|.+.|.++.+.+..+.... ... +.++|||+++++++.||.|.++|+.+.+. ...+.. ......++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----VATIKV-GGNPRGIA 84 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE----EEEEE--SSEEEEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE----EEEEec-CCCcceEE
Confidence 456778999999999999999998654 333 78999999999999999999999999885 333333 24568899
Q ss_pred EcCCCcEEEEEe-cCCeEEEEECCCCeEEEEeecCCC-----CCceeeEEECCCCCEE-EEecCCCcEEEEEcCCceeEE
Q 024185 144 FSNDGKSMLLTT-TNNNIYVLDAYGGEKRCGFSLEPS-----PNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 144 ~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 216 (271)
+|+||+++++++ .++.+.++|.++.+.++.+..... ...+..+..+|....+ ++--+.+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998776 589999999999999888754322 1246667778888844 455556889998987655433
Q ss_pred --EecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcC
Q 024185 217 --CWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 217 --~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~ 257 (271)
.+. -........|+|++++++.+. +.+-++|.+++++...
T Consensus 165 ~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 165 VTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred eeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 333 233457889999999887764 7799999988876544
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=2.8e-14 Score=107.48 Aligned_cols=231 Identities=13% Similarity=0.050 Sum_probs=145.0
Q ss_pred eeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE-ecCCcc
Q 024185 16 FARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-RLRGRP 94 (271)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~ 94 (271)
....++.+..++.....+-+. +......+..+.|||+|+.+ +.+...|-.|.+|.+.+.+....- ..+++.
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ck----Ideg~agls~~~WSPdgrhi----L~tseF~lriTVWSL~t~~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCK----IDEGQAGLSSISWSPDGRHI----LLTSEFDLRITVWSLNTQKGYLLPHPKTNVK 137 (447)
T ss_pred eeeccceEEEEEeecceeEEE----eccCCCcceeeeECCCcceE----eeeecceeEEEEEEeccceeEEecccccCce
Confidence 334566888887776655444 55566778889999999775 568889999999999887654322 344566
Q ss_pred eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe
Q 024185 95 TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 95 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 174 (271)
.++|+|||++.+..+.-.....+++..-+. ......++-.+-..+.+.|+|||+.|++ ||.--.-.+..+
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY 207 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY 207 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee
Confidence 799999999988887542211111111000 0001112223445678899999987765 432111111112
Q ss_pred ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE--------------------------------------
Q 024185 175 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-------------------------------------- 216 (271)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------- 216 (271)
... -.+..+.|+|.+++++.|+.|+.+++.+--+.+...
T Consensus 208 e~~---lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~ 284 (447)
T KOG4497|consen 208 ERG---LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL 284 (447)
T ss_pred eec---cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence 211 227779999999999999999988876532222110
Q ss_pred ----------------------Ee------cCCcceeEEEEEecCCcEEEEeC----CeEEEEcCCCCCCCcCCC-CCCc
Q 024185 217 ----------------------CW------NGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPNPSSNSTDES-TDPQ 263 (271)
Q Consensus 217 ----------------------~~------~~~~~~v~~~~~s~~~~~l~~~~----~~v~iw~~~~~~~~~~~~-~~~~ 263 (271)
.+ ....-.+.-++|++|..++++-. +.+-+||++..++..... ..|+
T Consensus 285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pi 364 (447)
T KOG4497|consen 285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPI 364 (447)
T ss_pred ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccce
Confidence 00 11123466799999999999986 679999999887655432 3455
Q ss_pred cccc
Q 024185 264 ATVK 267 (271)
Q Consensus 264 ~~~~ 267 (271)
+...
T Consensus 365 raf~ 368 (447)
T KOG4497|consen 365 RAFE 368 (447)
T ss_pred eEEE
Confidence 5443
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=2e-11 Score=98.38 Aligned_cols=205 Identities=17% Similarity=0.196 Sum_probs=133.1
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEE---Ee--c----------CCcceEEEcCCCCEEEEEe
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGI---LR--L----------RGRPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~---~~--~----------~~~~~~~~~~~~~~l~~~~ 109 (271)
..-..++++|++++++ ++.-.+|.+.++++.. +..... +. + ....++.++|+++++++..
T Consensus 87 ~~p~~i~~~~~g~~l~----vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLY----VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp SCEEEEEECTTSSEEE----EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred CCcEEEEEecCCCEEE----EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 3444588999999852 3555799999999976 332222 21 1 1123589999999888874
Q ss_pred c-CCeEEEEeCCCCCC--CcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECC--CCeE--EEEeecC----
Q 024185 110 E-AGAIKLFDSRSYDK--GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY--GGEK--RCGFSLE---- 177 (271)
Q Consensus 110 ~-d~~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~--~~~~--~~~~~~~---- 177 (271)
. ...|.+|++..... .+.....+ ......+.+.|+|+++++++..+ ++.|.++++. +++. +..+...
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred cCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 3 45899999977652 11122222 23456889999999999877765 7889999987 4432 2222211
Q ss_pred CCCCceeeEEECCCCCEEEEecC-CCcEEEEEcC--Cce--eEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcC
Q 024185 178 PSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNIN--TRN--EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIP 249 (271)
Q Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~ 249 (271)
........+.++|||++|+++.. .++|.+|++. +++ .+..+.......+.++++|+|++|+++. +.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 11124677999999999988765 5789999993 233 3344443344478999999999999886 77999876
Q ss_pred --CCCCCC
Q 024185 250 --NPSSNS 255 (271)
Q Consensus 250 --~~~~~~ 255 (271)
+++.+.
T Consensus 322 d~~tG~l~ 329 (345)
T PF10282_consen 322 DPDTGKLT 329 (345)
T ss_dssp ETTTTEEE
T ss_pred eCCCCcEE
Confidence 455543
No 234
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.6e-13 Score=103.32 Aligned_cols=234 Identities=13% Similarity=0.118 Sum_probs=162.7
Q ss_pred ceeEEeeecceeeEEEEeeccc--eeeEEEEEc-ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 11 TQALLFARQNIILILLESLCGI--YQCMIIEFF-ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.+-|+-+..+....+|+..... .-+..+... .+|...|.+++|.....+ +.+|+.+++|.+-|+++.+.+..
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~-----~~SG~~~~~VI~HDiEt~qsi~V 142 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF-----LYSGERWGTVIKHDIETKQSIYV 142 (609)
T ss_pred CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee-----EecCCCcceeEeeecccceeeee
Confidence 3445555556666666543221 112223333 345688999999998888 88999999999999999998877
Q ss_pred EecC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEE
Q 024185 88 LRLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYV 162 (271)
Q Consensus 88 ~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~ 162 (271)
+... .++.+..+|-.+.|++.+.++.|.+||.+..+. +...+.+.........+.|+|. ..+|++.+..+-+-+
T Consensus 143 ~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~ 221 (609)
T KOG4227|consen 143 ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNV 221 (609)
T ss_pred ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeecCCCceeEEeccccCCCCc
Confidence 7543 356689999999999999999999999987652 3445555666677888999995 556777788888899
Q ss_pred EECCCCeE--------------------------------------EEEeecCC----------CC------CceeeEEE
Q 024185 163 LDAYGGEK--------------------------------------RCGFSLEP----------SP------NTNTEATF 188 (271)
Q Consensus 163 ~d~~~~~~--------------------------------------~~~~~~~~----------~~------~~v~~~~~ 188 (271)
||.+..+. ...+..+. ++ ..+.+++|
T Consensus 222 ~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F 301 (609)
T KOG4227|consen 222 FDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTF 301 (609)
T ss_pred eeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeee
Confidence 99763210 00000010 00 12334455
Q ss_pred CCCCCEEEEecCCCcEEEEEcCC----------c-------------eeEEEecCCcceeEEEEEecCCcEEEEeC--Ce
Q 024185 189 TPDGQYVVSGSGDGTLHAWNINT----------R-------------NEVACWNGNIGVVACLKWAPRRAMFVAAS--SV 243 (271)
Q Consensus 189 ~~~~~~l~~~~~dg~i~iwd~~~----------~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~ 243 (271)
.-|- -+++|+.+-.|++|.+.. | +.+..+++|.+-++.+.|+|...+|++.+ +.
T Consensus 302 ~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 302 IDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENS 380 (609)
T ss_pred ecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhh
Confidence 4333 378888888899998753 1 12345689999999999999998888887 77
Q ss_pred EEEEcCCC
Q 024185 244 LSFWIPNP 251 (271)
Q Consensus 244 v~iw~~~~ 251 (271)
+++|....
T Consensus 381 ~KlWS~~r 388 (609)
T KOG4227|consen 381 FKLWSDHR 388 (609)
T ss_pred eecccccc
Confidence 99998654
No 235
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.3e-14 Score=112.99 Aligned_cols=231 Identities=22% Similarity=0.301 Sum_probs=170.8
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC------
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR------ 91 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------ 91 (271)
..++++..-........ .....+..|.+.+..++.-|+..+. |.+++.|+.+.-+|++.+.+...+...
T Consensus 206 s~dgqvr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~----f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKP----FLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred cccCceeeeeeccccce-ecceecccccCccceeeecCCCCCc----ccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 44565555444332211 2234467889999999999998875 679999999999999887655444221
Q ss_pred --CcceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCc----ceEE----EecCCccceEEEEEcCCCcEEEEEecCCeE
Q 024185 92 --GRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGP----FDTF----LVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 160 (271)
Q Consensus 92 --~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~----~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 160 (271)
....++..|... .+++++.|..+++||.+.-.... +..+ ......-.|++++|+.++.-|+++..|-.|
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 123478888664 89999999999999987543210 1111 111233569999999888888888888899
Q ss_pred EEEECCC--C----------eEEE-EeecCCCCCceeeEEE-CCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 161 YVLDAYG--G----------EKRC-GFSLEPSPNTNTEATF-TPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 161 ~~~d~~~--~----------~~~~-~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
+++.-.- | ..+. .+++|.+...|..+-| -|..+|+++|+.-|.|.||+-.+++.+..+.+...-|+
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 9995321 2 2223 3788888777877765 68899999999999999999999999999988777999
Q ss_pred EEEEecCCcEEEEeC--CeEEEEcCCCCC
Q 024185 227 CLKWAPRRAMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~--~~v~iw~~~~~~ 253 (271)
|+.-+|.-..||+++ .+|+||...+.+
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCccc
Confidence 999999999999998 789999985543
No 236
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.57 E-value=1.6e-11 Score=97.20 Aligned_cols=224 Identities=9% Similarity=0.023 Sum_probs=151.2
Q ss_pred eeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhc---------cCceEEEEEecCcceeEEEecC
Q 024185 21 IILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLT---------TALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.+..++.... ..+..+........ + +||+++.+++ +.+ .+..|.+||..+.+.+..+...
T Consensus 27 ~~v~ViD~~~~----~v~g~i~~G~~P~~-~-~spDg~~lyv----a~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG----RVLGMTDGGFLPNP-V-VASDGSFFAH----ASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC----EEEEEEEccCCCce-e-ECCCCCEEEE----EeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 57778887666 33333443333332 4 9999998544 445 7899999999999999888743
Q ss_pred C---------cceEEEcCCCCEEEEEe-c-CCeEEEEeCCCCCCCcceEEEecCCc------------------------
Q 024185 92 G---------RPTVAFDQQGLVFAVAM-E-AGAIKLFDSRSYDKGPFDTFLVGGDT------------------------ 136 (271)
Q Consensus 92 ~---------~~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~------------------------ 136 (271)
. ...++++|||+++++.. . +..|.+.|+.+++. .......+..
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGY 174 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--EEEEeCCCCcEEEEecCCccEEEeecCceEEEEe
Confidence 2 22589999999999875 3 68999999988664 1111110000
Q ss_pred -----cceEEE--------------EEcC-CCcEEEEEecCCeEEEEECCCC-----eEEEEeecC-----CCCCceeeE
Q 024185 137 -----AEVCDI--------------KFSN-DGKSMLLTTTNNNIYVLDAYGG-----EKRCGFSLE-----PSPNTNTEA 186 (271)
Q Consensus 137 -----~~v~~~--------------~~s~-~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~-----~~~~~v~~~ 186 (271)
...... .|++ +|++++.... |+|.+.|+... +....+... -.+....-+
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 001111 2344 7777777666 99999996443 222222211 122334459
Q ss_pred EECCCCCEEEEec----------CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc-EEEEeC---CeEEEEcCCCC
Q 024185 187 TFTPDGQYVVSGS----------GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPS 252 (271)
Q Consensus 187 ~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~~ 252 (271)
+++|+++.++... ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.+ ++|.+.|..++
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 9999999888743 125799999999999998864 34689999999999 777665 77999999999
Q ss_pred CCCcCC
Q 024185 253 SNSTDE 258 (271)
Q Consensus 253 ~~~~~~ 258 (271)
+.....
T Consensus 333 k~i~~i 338 (352)
T TIGR02658 333 KELSSV 338 (352)
T ss_pred eEEeee
Confidence 877765
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=1.2e-12 Score=108.54 Aligned_cols=175 Identities=19% Similarity=0.199 Sum_probs=118.9
Q ss_pred CceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 71 ALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
...|.++|.........+.... ....+|+|||++|+.+..+ ..|++||+.+++. ..+..+.+.+.+++|+|
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-----~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-----EKVASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-----EEeecCCCCccceEECC
Confidence 3457777875444433333332 4558999999999887643 4799999988763 22333455677789999
Q ss_pred CCcEEEEE-ecC--CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecC
Q 024185 147 DGKSMLLT-TTN--NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNG 220 (271)
Q Consensus 147 ~~~~l~~~-~~d--~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~ 220 (271)
||+.|+.. +.+ ..|++||+.+++... +..+.. ......|+|||++++..+. ++ .|+++|+.+++.. .+..
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~ 319 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF 319 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec
Confidence 99987754 333 359999998776433 333322 2446799999998876654 33 5888888776643 3443
Q ss_pred CcceeEEEEEecCCcEEEEeC--C---eEEEEcCCCCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS--S---VLSFWIPNPSSN 254 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~--~---~v~iw~~~~~~~ 254 (271)
+......+.|+|+|++++.++ + .|.+||+.++..
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 455667889999999888775 2 689999887543
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.1e-13 Score=102.44 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=129.6
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCc----c--------eeEEEe--cC-CcceEEEcCCCCEEEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLA----S--------FQGILR--LR-GRPTVAFDQQGLVFAVA 108 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~--------~~~~~~--~~-~~~~~~~~~~~~~l~~~ 108 (271)
....+.+++|-|.+... |+.|+.. -|.+|..+.. . ..+.++ +| .+..+.|.+||..++++
T Consensus 139 sQrnvtclawRPlsase----lavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tA 213 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASE----LAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTA 213 (445)
T ss_pred hhcceeEEEeccCCcce----eeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeec
Confidence 45679999999987652 4455554 4889976421 1 112222 33 25669999999999988
Q ss_pred ec-CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-CeEEEEeecCCCCCceeeE
Q 024185 109 ME-AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 109 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~v~~~ 186 (271)
+. +..|.|||..++...|+.. ...+.++-+.|||||.+|+++..|+..++|+... ....+-..+. +.|...
T Consensus 214 S~gsssi~iWdpdtg~~~pL~~----~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs---grvqta 286 (445)
T KOG2139|consen 214 SFGSSSIMIWDPDTGQKIPLIP----KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS---GRVQTA 286 (445)
T ss_pred ccCcceEEEEcCCCCCcccccc----cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC---Cceeee
Confidence 64 5689999999988744442 2346789999999999999999999999996433 3333322222 248899
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCC-ce-----------e---EEEe-----cC----CcceeEEEEEecCCcEEEEeC-
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINT-RN-----------E---VACW-----NG----NIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~-~~-----------~---~~~~-----~~----~~~~v~~~~~s~~~~~l~~~~- 241 (271)
+|+|+|++|+..+.. .-.+|.+.. ++ . +..+ .. -.+.+.+++|.|.|.+|++.-
T Consensus 287 cWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 287 CWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 999999987755432 233443321 00 0 1111 11 145788999999999999873
Q ss_pred ---------CeEEEEcCCCC
Q 024185 242 ---------SVLSFWIPNPS 252 (271)
Q Consensus 242 ---------~~v~iw~~~~~ 252 (271)
..|.+||....
T Consensus 366 g~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred CCchhhhhhhhhhhhccccc
Confidence 22666776553
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=2.3e-13 Score=116.14 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=148.4
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc----c--eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccc
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR----P--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 138 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 138 (271)
++.+..+..+.+||...+.....+...+. . .+.++++.-++++|+.-+.|.+|+...... ...+.+|.+.
T Consensus 102 i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~----p~~l~GHeG~ 177 (967)
T KOG0974|consen 102 IALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK----PIRLKGHEGS 177 (967)
T ss_pred EEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC----cceecccCCc
Confidence 55677788888898887776666655532 1 145577778999999999999999985443 2367899999
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE
Q 024185 139 VCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
+.++.|+.||.++++.|+|.++++|++.+.+... ..-+|.. .+..++|.|+ .+++++.|-+.++|+. +++.+..
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa--Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~ 252 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA--RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEV 252 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc--eeEEEEeccc--eeEEeccceEEEEEec-ccceehh
Confidence 9999999999999999999999999999988766 3334544 4899999998 8999999999999975 4666667
Q ss_pred ecCCcc-eeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 218 WNGNIG-VVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 218 ~~~~~~-~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.+|.. .|..++..++....++++ +.+++|++.........+
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~ 297 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVE 297 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccccee
Confidence 777754 689999999888888887 889999998765554433
No 240
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=5.6e-12 Score=103.54 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=127.8
Q ss_pred eEEeeEEecCCchhhhhhhhhhc-cCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEe-c--CCeEEEEeCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLT-TALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAM-E--AGAIKLFDSRS 121 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~--d~~i~i~d~~~ 121 (271)
......|+|+|+.+++ +.+-. .+..|+++|+.+++........+ .....|+|||+.++... . +..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~--y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFY--YTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEE--EEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5667999999985322 11222 35679999998888766555444 33478999998777553 2 35788889877
Q ss_pred CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe
Q 024185 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
++. ..+..+........|+|||+.|+..+.. ..|.+.|+.+++..+... ... ....|+|||++++..
T Consensus 267 g~~-----~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~----~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 267 KTL-----TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK----NNSSVSTYKNYIVYS 336 (419)
T ss_pred CcE-----EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC----cCceECCCCCEEEEE
Confidence 663 2233333334456899999988877642 268888988777644322 111 125899999998866
Q ss_pred cCC---------CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCC
Q 024185 199 SGD---------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSN 254 (271)
Q Consensus 199 ~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~ 254 (271)
+.. ..|.+.|+.+++.. .+... .......|+|||+.++..+ ..+.+.+++....
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 543 36888898877653 34332 2334689999999877654 3377888876543
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.7e-12 Score=103.12 Aligned_cols=111 Identities=19% Similarity=0.453 Sum_probs=87.4
Q ss_pred cceEEEEEcCCCcEEEEE--ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC---CcEEEEEcCC
Q 024185 137 AEVCDIKFSNDGKSMLLT--TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---GTLHAWNINT 211 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~ 211 (271)
++|.++.|+|+++.+++. -.-..+.+||++ +.++..+. .++ =.++-|+|.|++++.++-+ |.+-+||+.+
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egp--RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGP--RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCC--ccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 789999999999877654 457789999976 55555553 332 4458999999999877654 8999999999
Q ss_pred ceeEEEecCCcceeEEEEEecCCcEEEEeC--------CeEEEEcCCCCCC
Q 024185 212 RNEVACWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~~v~iw~~~~~~~ 254 (271)
.+++..+..... +-++|+|||++++++. +.++||+.....+
T Consensus 346 ~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 346 RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 998888876554 5689999999999885 5699999876543
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=2.4e-14 Score=107.88 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=129.0
Q ss_pred eeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEE-ecCCeEEEEeCCCCCCCcc
Q 024185 50 GLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVA-MEAGAIKLFDSRSYDKGPF 127 (271)
Q Consensus 50 ~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~ 127 (271)
-+.|||+|++ +|+.+.- .+.|-|.++-+..+.+.. ..+..+.|..|..+++.+ ..++.|.+|++...+.
T Consensus 13 ~c~fSp~g~y-----iAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--- 83 (447)
T KOG4497|consen 13 FCSFSPCGNY-----IASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--- 83 (447)
T ss_pred ceeECCCCCe-----eeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee---
Confidence 4789999999 6666655 777888887765555433 245568999988766655 6788999999998876
Q ss_pred eEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----
Q 024185 128 DTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD----- 201 (271)
Q Consensus 128 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 201 (271)
...+.....++.++.|||||+.++.. ..+-+|.+|.+.+.+.... .-.... +..++|+|||++.+..+.-
T Consensus 84 -~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~--~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 84 -YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTN--VKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred -EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccC--ceeEEECCCCceeeeeecccHHHH
Confidence 56666777899999999999766654 5589999999988775443 222222 5779999999998765431
Q ss_pred -------------------------------CcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEc
Q 024185 202 -------------------------------GTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 202 -------------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
..+.+||---.-.+..+. ..-.+..++|+|-+++|+.|+ +.+|+-+
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhc
Confidence 223444422111112221 123577788888888888887 5566655
Q ss_pred CCC
Q 024185 249 PNP 251 (271)
Q Consensus 249 ~~~ 251 (271)
--+
T Consensus 239 h~t 241 (447)
T KOG4497|consen 239 HFT 241 (447)
T ss_pred eee
Confidence 433
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.2e-12 Score=105.65 Aligned_cols=173 Identities=14% Similarity=0.049 Sum_probs=114.4
Q ss_pred eEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC
Q 024185 73 EYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
.|.++|.+.+.......... +...+|+|||+.|+..+.+ ..|++||+.+++. ..+....+......|+|||
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----EQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----EEccCCCCCcCCeEECCCC
Confidence 46667776554433333332 3558999999998876543 3699999988763 2222333445678999999
Q ss_pred cEEEEE-ecCC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCc
Q 024185 149 KSMLLT-TTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 149 ~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 222 (271)
+.|+.. +.++ .|++||+.+++... +..+.. ......|+|||+.++..+. +| .|+++|+.+++...... ..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~ 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VG 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-cccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC
Confidence 988754 4444 68889998876543 333332 2556899999998876654 33 57778887776533221 12
Q ss_pred ceeEEEEEecCCcEEEEeC---C--eEEEEcCCCCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSN 254 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~~~~ 254 (271)
.......|+|||+.++..+ + .|.+||+.+++.
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 2234678999999888765 2 488899987654
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=9.7e-12 Score=103.48 Aligned_cols=173 Identities=17% Similarity=0.091 Sum_probs=110.9
Q ss_pred eEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecC---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC
Q 024185 73 EYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEA---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
.+.++|.+.......+... .+....|+|||++|+..+.+ ..|++||+.+++. ..+....+.....+|+|||
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-----~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-----EKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-----EEecCCCCCcCCeeECCCC
Confidence 5666676554433333333 34558999999998877543 3688999987763 1122222334578999999
Q ss_pred cEEEEE-ecCC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCc
Q 024185 149 KSMLLT-TTNN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 149 ~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 222 (271)
+.|+.. +.++ .|+++|+.+++... +..+.. .....+|+|||++++..+. ++ .|+++|+.+++... +....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g 349 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTR-ITRHRA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG 349 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence 988754 5555 48888988776533 333322 2566899999998876654 33 57777887776543 22122
Q ss_pred ceeEEEEEecCCcEEEEeC---C--eEEEEcCCCCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS---S--VLSFWIPNPSSN 254 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~---~--~v~iw~~~~~~~ 254 (271)
......+|+|||++|+..+ + .|.++|+.+++.
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 2234678999999887764 3 466678877654
No 245
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=110.20 Aligned_cols=161 Identities=18% Similarity=0.309 Sum_probs=120.5
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC--CCcEEEEEecCCeE
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLTTTNNNI 160 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i 160 (271)
.+.+.+|. +++++|+.+|.+|++|++|-.+.|||.-..++ +... -.+|...|.+++|-| +.+.+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI-~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSI-STGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeee-ecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 44567775 67899999999999999999999999986654 3333 358999999999999 56778899999999
Q ss_pred EEEECCCC----------eEEEEeecCCCCCceeeEEECCCC-CEEEEecCCCcEEEEEcCCceeEE-------E---ec
Q 024185 161 YVLDAYGG----------EKRCGFSLEPSPNTNTEATFTPDG-QYVVSGSGDGTLHAWNINTRNEVA-------C---WN 219 (271)
Q Consensus 161 ~~~d~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-------~---~~ 219 (271)
+++|+... +..+.+..|... |..++-.|++ +.+-++++||+|+-+|++....-. . +.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~r--VKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDR--VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhh--hhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 99999742 223344555554 7788999998 678899999999999998632211 1 11
Q ss_pred CCcceeEEEEEecCCc-EEEEeCC--eEEEEcCC
Q 024185 220 GNIGVVACLKWAPRRA-MFVAASS--VLSFWIPN 250 (271)
Q Consensus 220 ~~~~~v~~~~~s~~~~-~l~~~~~--~v~iw~~~ 250 (271)
..--...++..+|... +|+.|+. -.++||.+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1123457889999655 6666663 38999953
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=9.7e-12 Score=102.72 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=109.6
Q ss_pred ceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEE---EEecC--CeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 72 LEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFA---VAMEA--GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~---~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
..|.+.|.+.+.......... .....|+|||+.++ +...+ ..|++.++.+++. ..+....+.....+||
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----KKILALQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----eEeecCCCCccceEEC
Confidence 456677776555443333322 34489999997532 33333 3688889887764 2222233455678999
Q ss_pred CCCcEEEEEec-----CCeEEEEECCCC---eEEEEeecCCCCCceeeEEECCCCCEEEEec-CCCcEEEE--EcCC-ce
Q 024185 146 NDGKSMLLTTT-----NNNIYVLDAYGG---EKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-GDGTLHAW--NINT-RN 213 (271)
Q Consensus 146 ~~~~~l~~~~~-----d~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~ 213 (271)
|||+.|+..+. +..+..|++..+ +..+....... .....+|+|||+.|+..+ .+|...+| ++.. +.
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~--~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG--TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 99999887653 223444777653 32222222211 245689999999888665 35654555 4432 33
Q ss_pred eEEEecCCcceeEEEEEecCCcEEEEeC-----CeEEEEcCCCCCCC
Q 024185 214 EVACWNGNIGVVACLKWAPRRAMFVAAS-----SVLSFWIPNPSSNS 255 (271)
Q Consensus 214 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~v~iw~~~~~~~~ 255 (271)
....+..+...+....|||||+.|+..+ ..|.+||+.+++..
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 3444544455677899999999888764 35999999887654
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=4.6e-10 Score=90.58 Aligned_cols=202 Identities=15% Similarity=0.194 Sum_probs=130.4
Q ss_pred ceEEeeEEecCCchhhhhhhhhhc-cCceEEEEEecCc--c--eeEEEe-cCCcce-EEEcCCCCEEEEEe-cCCeEEEE
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLT-TALEYGIFVLMLA--S--FQGILR-LRGRPT-VAFDQQGLVFAVAM-EAGAIKLF 117 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~-~dg~i~iwd~~~~--~--~~~~~~-~~~~~~-~~~~~~~~~l~~~~-~d~~i~i~ 117 (271)
.....++++|+++.+++ .-..+ .++.|..|.+... + .+.... ....+| ++++|++++|+++. .+|.+.++
T Consensus 37 ~~Ps~l~~~~~~~~LY~--~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYV--VNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSECCEEE-TTSSEEEE--EETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCceEEEEeCCCEEEE--EEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 34455889999998544 11111 5789999998764 3 233333 223344 99999999999986 47899999
Q ss_pred eCCCCC-CCcc-eEEEec--------CCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCCe--E--EEEeecCCCCCc
Q 024185 118 DSRSYD-KGPF-DTFLVG--------GDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGE--K--RCGFSLEPSPNT 182 (271)
Q Consensus 118 d~~~~~-~~~~-~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~--~--~~~~~~~~~~~~ 182 (271)
++.... .... ...... .......++.++|+++++++... ...|.+|++.... . ...+..... ..
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-~G 193 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-SG 193 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-SS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-CC
Confidence 998743 2111 011110 12245789999999999888754 4589999997654 3 223333322 34
Q ss_pred eeeEEECCCCCEEEEecC-CCcEEEEEcC--Cce--eEEEecCC------cceeEEEEEecCCcEEEEeC---CeEEEEc
Q 024185 183 NTEATFTPDGQYVVSGSG-DGTLHAWNIN--TRN--EVACWNGN------IGVVACLKWAPRRAMFVAAS---SVLSFWI 248 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~~------~~~v~~~~~s~~~~~l~~~~---~~v~iw~ 248 (271)
.+.+.|+|++++++...+ ++.|.++++. +++ .++.+... ......+.++|||++|.++. +.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 788999999999877765 7889999988 443 23333211 12467899999999988875 6799999
Q ss_pred CC
Q 024185 249 PN 250 (271)
Q Consensus 249 ~~ 250 (271)
++
T Consensus 274 ~d 275 (345)
T PF10282_consen 274 LD 275 (345)
T ss_dssp EC
T ss_pred Ee
Confidence 84
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.7e-12 Score=104.67 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=146.4
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR- 91 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 91 (271)
.|+++.++..++.++...| ..+..|....+.++++..++...+ ++.|+.+|.|..||.+....+.++...
T Consensus 147 Dly~~gsg~evYRlNLEqG----rfL~P~~~~~~~lN~v~in~~hgL-----la~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQG----RFLNPFETDSGELNVVSINEEHGL-----LACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cEEEeecCcceEEEEcccc----ccccccccccccceeeeecCccce-----EEecccCceEEEecchhhhhheeeeccc
Confidence 4667777889999998888 777778888899999999999888 888999999999999988776666321
Q ss_pred ------------CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC--CcEEEEEecC
Q 024185 92 ------------GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND--GKSMLLTTTN 157 (271)
Q Consensus 92 ------------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d 157 (271)
.+++++|+.+|-.+++|+.+|.+.|||++..+. +... -.+..-+|..+.|.+. ++.+++ ...
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~k-dh~~e~pi~~l~~~~~~~q~~v~S-~Dk 293 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVK-DHGYELPIKKLDWQDTDQQNKVVS-MDK 293 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeec-ccCCccceeeecccccCCCceEEe-cch
Confidence 256799999999999999999999999998774 2221 2233467889999875 344444 345
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 213 (271)
..++|||-.+|+....+..... +..+|+-|++-+++++.+++.+..|-+....
T Consensus 294 ~~~kiWd~~~Gk~~asiEpt~~---lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 294 RILKIWDECTGKPMASIEPTSD---LNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred HHhhhcccccCCceeeccccCC---cCceeeecCCceEEEecCCCcceeEEccccC
Confidence 6799999999998777654333 7889999999999999999988888776533
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=3.2e-12 Score=103.18 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=132.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC-ccceEEEEEc------C--------------CCcEEEEEecCC
Q 024185 100 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD-TAEVCDIKFS------N--------------DGKSMLLTTTNN 158 (271)
Q Consensus 100 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~s------~--------------~~~~l~~~~~d~ 158 (271)
|...++|....||.+++||...++. .+.+....| .+...+..|. | |-..++-|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4567899999999999999998775 222222222 2334444442 1 223577788899
Q ss_pred eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEE
Q 024185 159 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 238 (271)
.|.+|+...++....+....+.+.|.++.++.+-..+.+++.|+.+..|+..+.+.+..+......+.+++.+|||..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 99999999999999988777777799999999888999999999999999999999999988888899999999999999
Q ss_pred EeCCeEEEEcCCCCCCCcCCCC--CCcccc
Q 024185 239 AASSVLSFWIPNPSSNSTDEST--DPQATV 266 (271)
Q Consensus 239 ~~~~~v~iw~~~~~~~~~~~~~--~~~~~~ 266 (271)
++++.|++||+++++....+.. .|.+.+
T Consensus 161 ~as~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 161 TASRQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred eccceEEEEEccCceEEEEecCCCcceEEE
Confidence 9999999999999998877763 344443
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=3.4e-13 Score=120.98 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=151.9
Q ss_pred ccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 42 ATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 42 ~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
.++-..+.++.-+|...+ .++|+.||.+++|....++.+..++..+ +..+.|+.+|+.+.++..||.+.+|.
T Consensus 2205 k~~v~~v~r~~sHp~~~~-----Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPY-----YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ecccCceeeecCCCCCce-----EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 344456666777787777 7899999999999999998888876543 44589999999999999999999999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe---cCCeEEEEECCCC---eEEEEeecCCCCCceeeEEECCCC
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGG---EKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
.. .+ .....+.|.....++.|-. ..+++++ .++.+.+||.--. ..++ ..|.+. ++++++.|..
T Consensus 2280 ~~-pk----~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g--aT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2280 AS-PK----PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG--ATVLAYAPKH 2348 (2439)
T ss_pred cC-Cc----ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC--ceEEEEcCcc
Confidence 87 22 2556678888889998886 5566664 3788999996422 2233 566665 8889999999
Q ss_pred CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+.+++|+.+|.|++||++..+.++.++. +. ...++++++ |.++||++....++....
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999999999998888877764 44 567888887 999999998876665543
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.9e-10 Score=88.27 Aligned_cols=205 Identities=14% Similarity=0.175 Sum_probs=139.1
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--cceeEE----EecCCcceEEEcCCCCEEEEEec-CCeEE
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--ASFQGI----LRLRGRPTVAFDQQGLVFAVAME-AGAIK 115 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~-d~~i~ 115 (271)
...+..+-++++|+++.+++ +.--+.+|.|.-|.++. |+.... +.++....+++++++++++++.. .|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~--v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYV--VNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEE--EEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 34455666999999988555 34445578888888764 443211 12233344999999999998854 47999
Q ss_pred EEeCCCC-CCCcceEEEecCCccc----------eEEEEEcCCCcEEEEEec-CCeEEEEECCCCeEEEEeecC-CCCCc
Q 024185 116 LFDSRSY-DKGPFDTFLVGGDTAE----------VCDIKFSNDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLE-PSPNT 182 (271)
Q Consensus 116 i~d~~~~-~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~~~ 182 (271)
++.++.. .. ........|.+. +....+.|++++|++..- -.+|.+|++..|+....-... .....
T Consensus 115 v~p~~~dG~l--~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G 192 (346)
T COG2706 115 VYPLQADGSL--QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG 192 (346)
T ss_pred EEEcccCCcc--ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence 9999663 33 222223345544 889999999999988754 347999999987654332111 11134
Q ss_pred eeeEEECCCCCEEEEecC-CCcEEEEEcCCc-eeEEEecC---------CcceeEEEEEecCCcEEEEeC---CeEEEEc
Q 024185 183 NTEATFTPDGQYVVSGSG-DGTLHAWNINTR-NEVACWNG---------NIGVVACLKWAPRRAMFVAAS---SVLSFWI 248 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~---~~v~iw~ 248 (271)
.+.+.|+|++++....++ +++|.+|..... ..+..++. ...+...+..+|||++|.++. ..|-+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 677999999999988877 889999998763 22222211 123567889999999999987 5577776
Q ss_pred CCC
Q 024185 249 PNP 251 (271)
Q Consensus 249 ~~~ 251 (271)
+..
T Consensus 273 V~~ 275 (346)
T COG2706 273 VDP 275 (346)
T ss_pred EcC
Confidence 643
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=7.8e-12 Score=95.01 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=139.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-----eeEEEecCC--------------cceEEEcCCCC-
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-----FQGILRLRG--------------RPTVAFDQQGL- 103 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~--------------~~~~~~~~~~~- 103 (271)
....+.++.|...|.+ |++|..+|.|.++.-+... ....++.|. +..+.|.++++
T Consensus 24 eadiis~vef~~~Ge~-----LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGER-----LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccce-----EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 3457888999999999 9999999999999654322 223334442 44588888764
Q ss_pred -EEEEEecCCeEEEEeCCCCCCCc----------------ceEE----------------EecCCccceEEEEEcCCCcE
Q 024185 104 -VFAVAMEAGAIKLFDSRSYDKGP----------------FDTF----------------LVGGDTAEVCDIKFSNDGKS 150 (271)
Q Consensus 104 -~l~~~~~d~~i~i~d~~~~~~~~----------------~~~~----------------~~~~~~~~v~~~~~s~~~~~ 150 (271)
.+...+.|.+|++|.+.....+. ++.. --.+|.--|.++.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 66777789999999986543211 0000 01246677899999999998
Q ss_pred EEEEecCCeEEEEECCCCeEEE-EeecCCCC-----CceeeEEECCC-CCEEEEecCCCcEEEEEcCCcee------EEE
Q 024185 151 MLLTTTNNNIYVLDAYGGEKRC-GFSLEPSP-----NTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNE------VAC 217 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~ 217 (271)
++++. |-.|-+|+++--..-. ........ .-|++..|+|. .+.++..+..|+|++.|++.... +..
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 87754 7789999986432211 11111111 24777889996 56777888899999999985322 111
Q ss_pred e----------cCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 218 W----------NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 218 ~----------~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
. ..--..|..+.|+++|+++++-+ -+|++||++.
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nm 302 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNM 302 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccc
Confidence 1 11124688999999999999999 9999999854
No 253
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.44 E-value=7.3e-12 Score=109.05 Aligned_cols=182 Identities=13% Similarity=0.162 Sum_probs=127.2
Q ss_pred EEecCcceeEEEecCCcc--eEEEcC-CCCEEEEEecCCeEEEEeCCCCCCC---cceEEEecCCccceEEEEEcCCCcE
Q 024185 77 FVLMLASFQGILRLRGRP--TVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKS 150 (271)
Q Consensus 77 wd~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~ 150 (271)
|+. .|..+..+..|... -++.++ ++.++++|+.||+|++|+.+.-... .....++......+.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 444 46667777776533 355555 5599999999999999998753321 1112233334578999999999999
Q ss_pred EEEEecCCeEEEEECCCC-------eEEEEeecCCCCCceeeEEECC-CCC-EEEEecCCCcEEEEEcCCceeEEEec--
Q 024185 151 MLLTTTNNNIYVLDAYGG-------EKRCGFSLEPSPNTNTEATFTP-DGQ-YVVSGSGDGTLHAWNINTRNEVACWN-- 219 (271)
Q Consensus 151 l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-- 219 (271)
+|.++.||.|++.++... .+.+..+.+..+..+..-+|.. .+. .++.+...+.|..||++......+++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998652 1222222233322233333332 233 67888888999999998876655443
Q ss_pred CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 220 GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 220 ~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
...+.|++++.+|.+.+++.|. |.+.+||++-+.+...-+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 2346799999999999999997 999999999887766554
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=5.3e-12 Score=95.84 Aligned_cols=217 Identities=13% Similarity=0.105 Sum_probs=159.0
Q ss_pred eeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe-cCcceeEEE---ecCCcceEEEcCCCCEEEEE
Q 024185 33 YQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL-MLASFQGIL---RLRGRPTVAFDQQGLVFAVA 108 (271)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 108 (271)
.++..++.++++.+.++....-|.... +++.+.|.++++|-- +.++.-..+ ......++++.++...|++|
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~g-----v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEG-----VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCC-----eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEE
Confidence 345666778999999998888888887 889999999999943 444432222 23345679999999999999
Q ss_pred ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC----------------------
Q 024185 109 MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY---------------------- 166 (271)
Q Consensus 109 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~---------------------- 166 (271)
-.+|++.-+.+...-.+.........|...+..+-|+-..+++++.+.|..+.---.+
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL 166 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE
Confidence 9999999887764332222344455788888888888877777777766433211111
Q ss_pred -------------------CCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee-EEEecCCcceeE
Q 024185 167 -------------------GGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVA 226 (271)
Q Consensus 167 -------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~ 226 (271)
.-..+.++.+|... +.+++|.|....+++|..|..+.+||+.-++- ...+.+|...|.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 11233444455544 89999999999999999999999999975443 456788999999
Q ss_pred EEEEecCCcEEEEeC--CeEEEEcCCCCCCCc
Q 024185 227 CLKWAPRRAMFVAAS--SVLSFWIPNPSSNST 256 (271)
Q Consensus 227 ~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~ 256 (271)
.+...+.-+.+.+++ |.|.+|+++..+.+.
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccceeecC
Confidence 998888888888887 889999998766543
No 255
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.41 E-value=7.7e-11 Score=86.88 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=127.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEc----CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFD----QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC 140 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 140 (271)
|+.|+..|...+|...+.+....+-....+.+.+. -....+..++.|.++++.+++.+.. .+.+....-.+.
T Consensus 87 la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~----~~~~h~~~~~~n 162 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN----KFAVHNQNLTQN 162 (344)
T ss_pred EEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc----cceeecccccee
Confidence 78899999999999986654333322211211111 1223467788899999999877654 222211112378
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEECCCC-eE-EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE--
Q 024185 141 DIKFSNDGKSMLLTTTNNNIYVLDAYGG-EK-RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA-- 216 (271)
Q Consensus 141 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-- 216 (271)
+++++||++++++.+....|..|.+... +. +........ ..-.+..|+.....+|++..||++.|||++......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-CCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 8999999999999999999999988643 22 232222222 224558899999999999999999999998754332
Q ss_pred ---EecCCcceeEEEEEecCCc--EE-EEeC-CeEEEEcCCCCCCCc
Q 024185 217 ---CWNGNIGVVACLKWAPRRA--MF-VAAS-SVLSFWIPNPSSNST 256 (271)
Q Consensus 217 ---~~~~~~~~v~~~~~s~~~~--~l-~~~~-~~v~iw~~~~~~~~~ 256 (271)
+-+.|.+.+..+.|+|.|. +| ++-. +.+.+-|+++.+...
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 2356889999999998664 33 4434 789999998876443
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.4e-12 Score=105.07 Aligned_cols=214 Identities=12% Similarity=0.146 Sum_probs=145.0
Q ss_pred EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-------cceeEEEecCC--cceEEEcCCCCEEE
Q 024185 36 MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-------ASFQGILRLRG--RPTVAFDQQGLVFA 106 (271)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~--~~~~~~~~~~~~l~ 106 (271)
.++..|.+|...+..++.-.+.+. +++++.|+++++|.++. ..+..+++.|. +..+.|-.+.++++
T Consensus 726 irL~nf~GH~~~iRai~AidNENS-----FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ 800 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENS-----FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA 800 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccc-----eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee
Confidence 466778899998888877777776 88999999999998863 23566677775 45588888888777
Q ss_pred EEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC--CCcEEEEE-ecCCeEEEEECCCCeEEEEeecCC--CC-
Q 024185 107 VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN--DGKSMLLT-TTNNNIYVLDAYGGEKRCGFSLEP--SP- 180 (271)
Q Consensus 107 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~--~~- 180 (271)
++ ||.|++||.--+.. +....-....+.+..+..-| +...++++ +...+++++|.+.++-...++... .+
T Consensus 801 Sc--D~giHlWDPFigr~--Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRL--LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred ec--cCcceeecccccch--hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 65 78999999866553 21111112223344444444 34444444 678999999999887665554432 22
Q ss_pred CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEE-EcCCCCCCCcC
Q 024185 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSF-WIPNPSSNSTD 257 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~i-w~~~~~~~~~~ 257 (271)
..+.+++..|.|++++.+-.+|.|.+.|.++|+.+..++.-......++ .|....|+... .++.+ |..-.+....+
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence 4578899999999999999999999999999999887764443333333 33344444433 45656 76655554444
Q ss_pred CC
Q 024185 258 ES 259 (271)
Q Consensus 258 ~~ 259 (271)
..
T Consensus 956 ~k 957 (1034)
T KOG4190|consen 956 DK 957 (1034)
T ss_pred cC
Confidence 43
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=2.2e-10 Score=87.35 Aligned_cols=238 Identities=13% Similarity=0.140 Sum_probs=157.3
Q ss_pred ceeEEeeecceeeEEEEeeccce-eeEEEEEcccccc------------eEEeeEEecCCchhhhhhhhhhccCceEEEE
Q 024185 11 TQALLFARQNIILILLESLCGIY-QCMIIEFFATSKG------------IRRGLFLSACLQLMIALCLVLLTTALEYGIF 77 (271)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iw 77 (271)
.+.|..|..+|.+..+....... .......++.|+. .++.+.|.+++.... ++..+.|.+|++|
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~---FLlstNdktiKlW 113 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE---FLLSTNDKTIKLW 113 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE---EEEecCCcceeee
Confidence 35677777788888877554321 2223344544443 466788888776421 5577889999999
Q ss_pred EecCcceeE---------------EE---------------------ecCC--cceEEEcCCCCEEEEEecCCeEEEEeC
Q 024185 78 VLMLASFQG---------------IL---------------------RLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDS 119 (271)
Q Consensus 78 d~~~~~~~~---------------~~---------------------~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~ 119 (271)
-+....... .+ ..|. +++++++.|+..++++. |=.|.+|++
T Consensus 114 Ki~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnl 192 (433)
T KOG1354|consen 114 KIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNL 192 (433)
T ss_pred eeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccc
Confidence 774321100 00 1121 45588888888887775 778999998
Q ss_pred CCCCCCcceEEEecCCc-----cceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEE----EEeecCCCC---------
Q 024185 120 RSYDKGPFDTFLVGGDT-----AEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKR----CGFSLEPSP--------- 180 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~--------- 180 (271)
+-... .+....++.+. .-|++..|+|. -+.++..+..|+|++.|++..... ..+.....+
T Consensus 193 ei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 193 EIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred cccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 75432 23444444443 35888899994 567788888999999999853221 112111111
Q ss_pred -CceeeEEECCCCCEEEEecCCCcEEEEEc-CCceeEEEecCCc------------ce---eEEEEEecCCcEEEEeC--
Q 024185 181 -NTNTEATFTPDGQYVVSGSGDGTLHAWNI-NTRNEVACWNGNI------------GV---VACLKWAPRRAMFVAAS-- 241 (271)
Q Consensus 181 -~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~------------~~---v~~~~~s~~~~~l~~~~-- 241 (271)
..|..+.|+++|+|+++-..- +|++||+ ...+++.+++-|. .. -..++|+.++.++++|+
T Consensus 272 IsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~ 350 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN 350 (433)
T ss_pred hhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc
Confidence 357889999999999987654 8999999 4567777766553 11 24688999999999999
Q ss_pred CeEEEEcCCCCCC
Q 024185 242 SVLSFWIPNPSSN 254 (271)
Q Consensus 242 ~~v~iw~~~~~~~ 254 (271)
+.+++|+...+..
T Consensus 351 n~frvf~~~~gsk 363 (433)
T KOG1354|consen 351 NVFRVFNLARGSK 363 (433)
T ss_pred ceEEEecCCCCcc
Confidence 6799999766543
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.38 E-value=3.1e-10 Score=90.06 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=138.0
Q ss_pred ecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec---C---C-----cce--EE-EcC-CCCEEEEEecCCeEEEEe
Q 024185 54 SACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL---R---G-----RPT--VA-FDQ-QGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 54 s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~---~-----~~~--~~-~~~-~~~~l~~~~~d~~i~i~d 118 (271)
+.||+.++. +..|.|.+||.++....+.--+ . . .+. +. |++ +|.+++..+ -|...+.+
T Consensus 275 nsDGkrIvF------q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~ 347 (668)
T COG4946 275 NSDGKRIVF------QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMR 347 (668)
T ss_pred CCCCcEEEE------ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEEC
Confidence 456665433 5667899999987654322111 1 0 011 21 333 678888888 46777877
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC-eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN-NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
...+- ...+ +|.+.|.-..+.-+++-++.|..|| .+-++|.++++..+. ...-+ .|.++..+|+|++++.
T Consensus 348 ~~~~~-----~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg--~I~av~vs~dGK~~vv 418 (668)
T COG4946 348 PWDGY-----SIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLG--NIEAVKVSPDGKKVVV 418 (668)
T ss_pred CCCCe-----eEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCcc--ceEEEEEcCCCcEEEE
Confidence 76554 2332 5778899889998888999999998 899999998875543 33333 3999999999999999
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC------CeEEEEcCCCCCCC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS------SVLSFWIPNPSSNS 255 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~~v~iw~~~~~~~~ 255 (271)
+.....+.+.|+.+++....=+...+-|+...|||+++++|-+- ..|+++|+.+++..
T Consensus 419 aNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 419 ANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 99999999999999987665555667899999999999999883 56999999997754
No 259
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1e-11 Score=98.31 Aligned_cols=207 Identities=9% Similarity=0.055 Sum_probs=152.5
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe-cCCcce--EEEcCC--CCEEEEEecCCe
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR-LRGRPT--VAFDQQ--GLVFAVAMEAGA 113 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~--~~~~~~--~~~l~~~~~d~~ 113 (271)
..+..|.+.++.+.|...|.. +++|+.|..|.+||+..++....+. +|..+. ..|-|. .+.+++++.||.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~-----l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDV-----LASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hcccCCCCccceeeecccCce-----eeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 347899999999999999998 9999999999999999988877764 454333 456663 467899999999
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEEEeecCC--CC--CceeeEEE
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP--SP--NTNTEATF 188 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~--~~v~~~~~ 188 (271)
+++=.+..... ......+..|.++|.-++.-|+ .+.|.+++.|+.+.-+|++.+.+...+.... .+ .....++.
T Consensus 211 vr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 211 VRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99887654332 1235567789999999999995 4568899999999999999876544443221 11 34667888
Q ss_pred CCCCC-EEEEecCCCcEEEEEcCCcee------EEEec------CCcceeEEEEEecCC-cEEEEeC-CeEEEEcCCC
Q 024185 189 TPDGQ-YVVSGSGDGTLHAWNINTRNE------VACWN------GNIGVVACLKWAPRR-AMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 189 ~~~~~-~l~~~~~dg~i~iwd~~~~~~------~~~~~------~~~~~v~~~~~s~~~-~~l~~~~-~~v~iw~~~~ 251 (271)
+|-.. .+++++.|..+++||.+.-.. +..+. .....|++++|+.++ .+|++-+ ..|+++.-..
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 88655 788999999999999875221 22221 223468999999654 5666666 6788885433
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.35 E-value=4.1e-09 Score=95.91 Aligned_cols=199 Identities=18% Similarity=0.150 Sum_probs=130.3
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-------------------CCcceEEEcCC-CCEEEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL-------------------RGRPTVAFDQQ-GLVFAV 107 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~-~~~l~~ 107 (271)
-..+++.+++..+ +++-...+.|+.+|..++. +.++.+ .....++++|+ +..+++
T Consensus 626 P~GIavd~~gn~L----YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa 700 (1057)
T PLN02919 626 PQGLAYNAKKNLL----YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA 700 (1057)
T ss_pred CcEEEEeCCCCEE----EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence 3568888887653 2344556789999987654 333321 11234899995 455555
Q ss_pred EecCCeEEEEeCCCCCCCcceEEE-------ecC------CccceEEEEEcCCCcEEEEE-ecCCeEEEEECCCCeEEEE
Q 024185 108 AMEAGAIKLFDSRSYDKGPFDTFL-------VGG------DTAEVCDIKFSNDGKSMLLT-TTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 108 ~~~d~~i~i~d~~~~~~~~~~~~~-------~~~------~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~ 173 (271)
.+.++.|++||..++.. ..+. ..+ .......++++|+++.|+++ +.++.|++||+.++.....
T Consensus 701 d~~~~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred ECCCCeEEEEECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence 56788999999876542 1111 001 11235679999999865544 5578999999987653211
Q ss_pred eec-------------CCC------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-------------CC
Q 024185 174 FSL-------------EPS------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------------GN 221 (271)
Q Consensus 174 ~~~-------------~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~ 221 (271)
..+ ... -.....++++++|+.+++-+.++.|++||..++....... +.
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 100 000 0124578999999988888889999999998776553321 11
Q ss_pred cceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
-.....++++++|+++++.+ +.|++||+++++.
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 12467899999999777665 7799999988765
No 261
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.35 E-value=3.5e-13 Score=112.89 Aligned_cols=115 Identities=13% Similarity=0.285 Sum_probs=106.2
Q ss_pred EecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 131 LVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 131 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
.+.+|...|.|..|...|.++++|+.|..++||...++.++....+|... ++.++.+.+..++++++.|..|++|.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d--itdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD--ITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc--cchhccchhhhhhhhcccCceEEEEecC
Confidence 35679999999999999999999999999999999999999999999877 9999999999999999999999999999
Q ss_pred CceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCC
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN 250 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~ 250 (271)
.+.++..+.+|.+.|++++|+|-. .++. |++++||.+
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR 300 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc---cCCCCCceEecccc
Confidence 999999999999999999999965 3333 999999998
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.35 E-value=4e-10 Score=89.47 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=123.1
Q ss_pred CceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCC-eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc
Q 024185 71 ALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK 149 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 149 (271)
.|...+.+...+..++.-+..++....+..+++-++.|..|| .+-+||.++++ .......-+.|.+++.+|+|+
T Consensus 340 RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~vs~dGK 414 (668)
T COG4946 340 RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVKVSPDGK 414 (668)
T ss_pred cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-----EEEeeCCccceEEEEEcCCCc
Confidence 455666666555554444444566667777777899999998 89999999887 344555678899999999999
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC----cEEEEEcCCceeEEEecCCccee
Q 024185 150 SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG----TLHAWNINTRNEVACWNGNIGVV 225 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v 225 (271)
+++++.....+.+.|+.+++....-+... +-|+.+.|+|+++++|.+--+| .|+++|+..++....-. ..+.-
T Consensus 415 ~~vvaNdr~el~vididngnv~~idkS~~--~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~D 491 (668)
T COG4946 415 KVVVANDRFELWVIDIDNGNVRLIDKSEY--GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYD 491 (668)
T ss_pred EEEEEcCceEEEEEEecCCCeeEeccccc--ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccccc
Confidence 99999999999999999998644333223 4599999999999999887665 69999998877755443 33334
Q ss_pred EEEEEecCCcEEEEeC
Q 024185 226 ACLKWAPRRAMFVAAS 241 (271)
Q Consensus 226 ~~~~~s~~~~~l~~~~ 241 (271)
.+.+|.||+++|.--+
T Consensus 492 fsPaFD~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcccCCCCcEEEEEe
Confidence 6788999999776543
No 263
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=7e-12 Score=95.33 Aligned_cols=165 Identities=8% Similarity=0.029 Sum_probs=125.4
Q ss_pred hhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
+.+.+-.+-+-|.++|....-.....+.++.|...++.+..|..+|.|..+|++.+..+.......--|...|+++..-.
T Consensus 229 s~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq 308 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQ 308 (425)
T ss_pred cccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhc
Confidence 55667778888888876443333345777889888999999999999999999876321111222224889999998777
Q ss_pred -CCcEEEEEecCCeEEEEECCCCeE---EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc
Q 024185 147 -DGKSMLLTTTNNNIYVLDAYGGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 147 -~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 222 (271)
++++|.+.+.+|+|++||++--++ ++++.+|.+...-.-+...+....++++++|-..+||.++.+..+.+++-..
T Consensus 309 ~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 309 FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 788999999999999999987766 8889988776444456677888899999999999999999999998875332
Q ss_pred ----ceeEEEEEe
Q 024185 223 ----GVVACLKWA 231 (271)
Q Consensus 223 ----~~v~~~~~s 231 (271)
..+.+++|.
T Consensus 389 s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 389 SASEVDIPSVAFD 401 (425)
T ss_pred ccccccccceehh
Confidence 234555554
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=3.4e-11 Score=103.28 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=115.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
+++|+.-+.|.+|+....+.-..+.+|...+ +.++.||+++++.++|.++++|++++.+... ...-+|...+..+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWAC 224 (967)
T ss_pred EEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEE
Confidence 7799999999999986333333577886544 8889999999999999999999999987522 2345799999999
Q ss_pred EEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 143 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 143 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
.|.|+ .+++++.|-+.++|+. +++.+..+..|.. ..+..++..++....++++.|+.+++||+..
T Consensus 225 ~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eeccc--eeEEeccceEEEEEec-ccceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99998 8999999999999974 4555667777765 3588899999999999999999999999753
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.32 E-value=1e-09 Score=81.03 Aligned_cols=187 Identities=5% Similarity=-0.097 Sum_probs=131.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
+..++.|.++++.+++-+.......... ...+++++|++++++.+....|..|.+......... .......+.-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYN 209 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceee
Confidence 4467888888888887655444444333 566999999999999999999999998765532222 2344455667788
Q ss_pred EEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecC---CCCCceeeEEECCCCC--EEEEecCCCcEEEEEcCCceeEEE
Q 024185 143 KFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLE---PSPNTNTEATFTPDGQ--YVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 143 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
.|+.....+|++..||++.+||++........... .+.+.+..+.|+|-|. +|+..-.-+.+++.|+++++..+.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 99999999999999999999999876544433221 1236689999998654 455555567899999999877665
Q ss_pred ecC-------Cc-ceeEEEEEecCCcEEEEeC-CeEEEEcCCCC
Q 024185 218 WNG-------NI-GVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 252 (271)
Q Consensus 218 ~~~-------~~-~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~ 252 (271)
+.. |. ..|..-.|+.++.-+.+.+ -.+.-|++.+.
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 422 22 2367777777776666555 44556666554
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=2.2e-08 Score=77.17 Aligned_cols=202 Identities=14% Similarity=0.157 Sum_probs=137.7
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecC-cce---eEEEecC-C----------cceEEEcCCCCEEEEEec-CC
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASF---QGILRLR-G----------RPTVAFDQQGLVFAVAME-AG 112 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~---~~~~~~~-~----------~~~~~~~~~~~~l~~~~~-d~ 112 (271)
..++++++++++++ +.-..|.|.++-++. |.. ++.+... . .-...+.|++++|++..- -.
T Consensus 92 ~yvsvd~~g~~vf~----AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 92 CYVSVDEDGRFVFV----ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred eEEEECCCCCEEEE----EEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 56889999998422 445578999998865 332 2222111 1 334889999999988842 34
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECCCC--e--EEEEeec----CCCCCce
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAYGG--E--KRCGFSL----EPSPNTN 183 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~--~--~~~~~~~----~~~~~~v 183 (271)
.|.+|++..+++.+.....++ ....-+.|.|+|++++....++ +++|.+|..... + .++.+.. ..+..+.
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred eEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 799999998877555555443 3467899999999999887776 899999998763 2 2222211 1222456
Q ss_pred eeEEECCCCCEEEEecC-CCcEEEEEcCC--cee--EEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcC--CCCC
Q 024185 184 TEATFTPDGQYVVSGSG-DGTLHAWNINT--RNE--VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIP--NPSS 253 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~--~~~~ 253 (271)
..+..+|||++|.++.. ...|.++.+.. ++. +.....+....+...++|+|++|+++. ..+.+|.. ++++
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 77999999999998866 34788887764 332 222334444568899999999999997 55888866 4454
Q ss_pred CC
Q 024185 254 NS 255 (271)
Q Consensus 254 ~~ 255 (271)
+.
T Consensus 327 L~ 328 (346)
T COG2706 327 LT 328 (346)
T ss_pred EE
Confidence 43
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=4.5e-10 Score=83.83 Aligned_cols=194 Identities=11% Similarity=0.067 Sum_probs=131.2
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcce--eEEEecCCc--ceEEEcCC-CCEEEEEecCCeEEEEeCCCCC
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF--QGILRLRGR--PTVAFDQQ-GLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
.++.|++.+.. ++++..+|.+.+-+...... ++..+.|.. +..+|+.. .+.+++|++|+.+..||++-.+
T Consensus 125 lslD~~~~~~~-----i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 125 LSLDISTSGTK-----IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eEEEeeccCce-----EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 45778888887 66778888888555444333 336677754 44777653 4788999999999999999544
Q ss_pred CCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCC-CeEEEEeecCCCCCceeeEEECCCCC--EEEEec
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQ--YVVSGS 199 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~ 199 (271)
. +....-+-|...|.++.-+| .+.++++|+.|-.|++||.|+ ++++..-... +.|..+.++|.-. .++++-
T Consensus 200 ~--~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~---GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 200 T--FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG---GGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred c--eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc---cceEEEEecchhhhHHHHHHH
Confidence 2 22222456889999999888 578999999999999999985 5555443322 4599999999643 344444
Q ss_pred CCCcEEEEEcCCce-----eEEEecCCcceeEEEEEecCCcEEEEeC---CeEE-EEcCCCCC
Q 024185 200 GDGTLHAWNINTRN-----EVACWNGNIGVVACLKWAPRRAMFVAAS---SVLS-FWIPNPSS 253 (271)
Q Consensus 200 ~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~-iw~~~~~~ 253 (271)
.+| .+|.+...+. .....+.|.+-+..-.|......|++|+ +.++ +|-.-++.
T Consensus 275 h~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 275 HNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred hcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 443 6666665432 2334466777677777755556799988 4444 77655543
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=4.3e-10 Score=85.71 Aligned_cols=193 Identities=11% Similarity=0.159 Sum_probs=136.4
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
.+-...|+++..+|.+..+.....-.+-...+.+..|...+..+.|+-.... +++.+.|..+.---.+.+..+..
T Consensus 77 ~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-----V~s~~~dk~~~~hc~e~~~~lg~ 151 (404)
T KOG1409|consen 77 VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-----VLSTGKDKQFAWHCTESGNRLGG 151 (404)
T ss_pred eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-----EEEeccccceEEEeeccCCcccc
Confidence 3444667788888888777655443333455667888999999988887777 77888888776555556655443
Q ss_pred EecCC-cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 88 LRLRG-RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
+.... ...+.+.-. +...|...|.|....+..... .....+.+|.+.+.+++|.|....|++|..|..+.+||+.
T Consensus 152 Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~--~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 152 YNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGC--QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred eEeeccCCCCceeeE--EEEecccccceEEEEEeecCC--ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 32221 111222111 556676778887777765554 2366678999999999999999999999999999999986
Q ss_pred CCeEE-EEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 167 GGEKR-CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 167 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
-.+-. ..+.+|.+. +..++.-+--+.+.+++.||.|.+|+++.
T Consensus 228 g~~g~~~el~gh~~k--V~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 228 GRKGTAYELQGHNDK--VQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCcceeeeeccchhh--hhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 54332 334555554 77777777788899999999999999853
No 269
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.29 E-value=1.1e-10 Score=90.38 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=109.8
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCC--CCcceEEEecCCccceEEEEEcCCCcEEEEEe---cCCeEEEEECCCCeE
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYD--KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGGEK 170 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~ 170 (271)
...+++++++|.+..+....+++..... .++.....+. ..-+.+.|..+......+. ....+.+|....+.+
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~---~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP---KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc---cCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 6678889999999888887777765543 2223333332 2334444544444444443 345566666555443
Q ss_pred EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-cCCcceeEEEEEecCCcEEEEeC--CeEEEE
Q 024185 171 RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-NGNIGVVACLKWAPRRAMFVAAS--SVLSFW 247 (271)
Q Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw 247 (271)
. .+-+|-.. ++.++|+||+++++++..|..|++-.......+..+ -||..-|..++.-++.. |+++| +++++|
T Consensus 145 ~-~~lGhvSm--l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 145 E-PILGHVSM--LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLW 220 (390)
T ss_pred c-hhhhhhhh--hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEE
Confidence 3 34456554 889999999999999999999999887766666665 57999999999887655 66665 789999
Q ss_pred cCCCCCCCcCCC
Q 024185 248 IPNPSSNSTDES 259 (271)
Q Consensus 248 ~~~~~~~~~~~~ 259 (271)
|+.+++.+...+
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999987665
No 270
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.1e-09 Score=87.48 Aligned_cols=171 Identities=14% Similarity=0.077 Sum_probs=107.4
Q ss_pred eEEEEEecCcceeEEEecCCcceEEEcCCCCE-EEEEec---CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC
Q 024185 73 EYGIFVLMLASFQGILRLRGRPTVAFDQQGLV-FAVAME---AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG 148 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 148 (271)
.|.+-|.+.................|+|||+. ++..+. +..|+++|+.+++. ..+....+......|+|||
T Consensus 170 ~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred eEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----EEEecCCCcEEeeEECCCC
Confidence 44444443333222233322334899999985 665433 35799999988774 2222344556678899999
Q ss_pred cEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCc
Q 024185 149 KSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNI 222 (271)
Q Consensus 149 ~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 222 (271)
+.++.... +..|.++|+.+++..+ +...... .....|+|||+.++..+. .+ .|.+.|+.+++..+.... .
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~--d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGI--DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCc--cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-C
Confidence 88775432 4578888988776433 4333221 334789999998876654 23 688888887776443321 1
Q ss_pred ceeEEEEEecCCcEEEEeC--C---------eEEEEcCCCCCC
Q 024185 223 GVVACLKWAPRRAMFVAAS--S---------VLSFWIPNPSSN 254 (271)
Q Consensus 223 ~~v~~~~~s~~~~~l~~~~--~---------~v~iw~~~~~~~ 254 (271)
. ....|+|||+.++..+ . .|.+.|++++..
T Consensus 321 ~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 321 K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 1 1348999999887664 2 477788877754
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=6.6e-10 Score=82.99 Aligned_cols=185 Identities=12% Similarity=0.004 Sum_probs=128.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC---C-----cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR---G-----RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT 136 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~---~-----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 136 (271)
++-+..+|.|.++..........+++- . ..++.|++.+..++++..+|.+.+-+...... ......+.|.
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l--e~vq~wk~He 165 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL--EKVQTWKVHE 165 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeee--eecccccccc
Confidence 566778888888876544433333322 1 23478899999999999999998665544433 2233567898
Q ss_pred cceEEEEEcC-CCcEEEEEecCCeEEEEECCC-CeEEEE-eecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCC-
Q 024185 137 AEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYG-GEKRCG-FSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINT- 211 (271)
Q Consensus 137 ~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~-~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~- 211 (271)
.+..-.+|+. +.+.+++|+.|+.+..||+|. ++.+.. .+.|.. .|.++.-+| .+.++++|+.|..|++||.++
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~--GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS--GVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec--ceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 8888888887 457889999999999999993 333332 333443 387777665 577999999999999999994
Q ss_pred ceeEEEecCCcceeEEEEEecCC--cEEEEeC-CeEEEEcCCCCCC
Q 024185 212 RNEVACWNGNIGVVACLKWAPRR--AMFVAAS-SVLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~-~~v~iw~~~~~~~ 254 (271)
++++..-. -.+.|+.+.++|.- ++|+++= +-.+|-+.+.+..
T Consensus 244 ~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 244 GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 66666554 34779999999953 3344432 5566666655443
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.1e-10 Score=91.52 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=120.0
Q ss_pred eEEecCCchhhhhhhhhhccCc---------eEEEEEecCcceeEEEe-cCCcceEEEcCCCCEEEEE--ecCCeEEEEe
Q 024185 51 LFLSACLQLMIALCLVLLTTAL---------EYGIFVLMLASFQGILR-LRGRPTVAFDQQGLVFAVA--MEAGAIKLFD 118 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~~d~~i~i~d 118 (271)
+.|++-|.-+.+ |++..-|. ++++.+++.....-.+. ...+.++.|+|+++-++++ -.=..+.++|
T Consensus 223 m~WN~~gt~LLv--LastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 223 MKWNKLGTALLV--LASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEeccCCceEEE--EEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 556666665444 45554444 67777777444444444 3357789999999877765 4556899999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (271)
++..- .+.+ .+++=.++-|+|.|++++.++. -|.+.+||+.+.+++..+..... +-+.|+|||+++
T Consensus 301 lr~~~-----v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t----t~~eW~PdGe~f 369 (566)
T KOG2315|consen 301 LRGKP-----VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT----TVFEWSPDGEYF 369 (566)
T ss_pred CCCCE-----eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc----eEEEEcCCCcEE
Confidence 87543 4444 3577888999999999988876 58999999999888888776553 338999999999
Q ss_pred EEecC------CCcEEEEEcCCceeEEEecCCcceeEEEEEecC
Q 024185 196 VSGSG------DGTLHAWNINTRNEVACWNGNIGVVACLKWAPR 233 (271)
Q Consensus 196 ~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 233 (271)
++++. |+.++||+. +|..++...- ......+.|-|-
T Consensus 370 lTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f-~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 370 LTATTAPRLRVDNGIKIWHY-TGSLLHEKMF-KSELLQVEWRPF 411 (566)
T ss_pred EEEeccccEEecCCeEEEEe-cCceeehhhh-hHhHhheeeeec
Confidence 98764 678999998 5666654321 124677788763
No 273
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.25 E-value=7.4e-09 Score=79.56 Aligned_cols=202 Identities=10% Similarity=0.063 Sum_probs=137.8
Q ss_pred EeeEEecCCchhhhhhhhhhccC-ceEEEEEecCcceeEEEecCCcce----EEEcCCCCEEEEEe-----cCCeEEEEe
Q 024185 49 RGLFLSACLQLMIALCLVLLTTA-LEYGIFVLMLASFQGILRLRGRPT----VAFDQQGLVFAVAM-----EAGAIKLFD 118 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~-----~d~~i~i~d 118 (271)
..++.+|..... ++.+-.- ....+||..+++..+.+....... -.|++||++|++.- ..|.|-+||
T Consensus 8 H~~a~~p~~~~a----vafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 8 HGVAAHPTRPEA----VAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cceeeCCCCCeE----EEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 345666644432 2223332 346789999999888886554322 78999999999873 347899999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec------------------CCeEEEEECCCCeEEEEeec--CC
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------------------NNNIYVLDAYGGEKRCGFSL--EP 178 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~--~~ 178 (271)
....- ...-.+..|.-.-..+.+.|||+.|+++.. +.++...|..+|+.+.+... ..
T Consensus 84 ~~~~~---~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 84 AARGY---RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred CcCCc---EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 98321 235556666667788999999988877642 34677778888988877544 23
Q ss_pred CCCceeeEEECCCCCEEEEecCCC-------cEEEEEcCCceeEEEec-------CCcceeEEEEEecCCcEEEEeC---
Q 024185 179 SPNTNTEATFTPDGQYVVSGSGDG-------TLHAWNINTRNEVACWN-------GNIGVVACLKWAPRRAMFVAAS--- 241 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~--- 241 (271)
+...+..++++++|..++..-..| .+-+++. ++.+..+. .-.+.+-++++++++.+++++|
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 334599999999998666554333 2344433 33333332 2235688999999999988887
Q ss_pred CeEEEEcCCCCCCCcCCC
Q 024185 242 SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 242 ~~v~iw~~~~~~~~~~~~ 259 (271)
+.+.+||..+++++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 789999999998876554
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=4.4e-11 Score=107.90 Aligned_cols=189 Identities=11% Similarity=0.132 Sum_probs=140.8
Q ss_pred EEeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce
Q 024185 5 VFALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF 84 (271)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 84 (271)
.-+.|.....+-+..+|.+..+.--.+ +....-.-.+ ...+..+.|+-+|.. +..+..||.+.+|... .++
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g-~s~vtr~~f~~qGnk-----~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAG-NSRVTRSRFNHQGNK-----FGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccC-cchhhhhhhcccCCc-----eeeeccCCceeecccC-Ccc
Confidence 345666677788888888888876555 2222121223 377888999999988 7788999999999996 555
Q ss_pred eEEEecCCcce--EEEcCCCCEEEEE---ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 85 QGILRLRGRPT--VAFDQQGLVFAVA---MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 85 ~~~~~~~~~~~--~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
....+.|.... +.|-. ..++++ +.++.+.+||..-... ....-..|.+.++++++-|..+.|++|+.+|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~---~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM---NSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc---cceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 55666676444 44433 556665 4568999999765433 12223789999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
|++||++..+.+++++. ++ ...++++|+..|.++||++.....++.++
T Consensus 2360 v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999998877766653 34 55689999999999999999887777764
No 275
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.22 E-value=4.8e-08 Score=75.20 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=128.1
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEec-CcceeEEEecCCcce--EEEcCCCCEEEEEec-----------------
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLM-LASFQGILRLRGRPT--VAFDQQGLVFAVAME----------------- 110 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~----------------- 110 (271)
-.||++|+++++..--.....|.|-+||.. +-+.+..+..+++-- +.+.|||+.|+++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 789999998544322224557899999998 667788888887533 889999988887731
Q ss_pred -CCeEEEEeCCCCCCCcceEEEe--cCCccceEEEEEcCCCcEEEEEecCC-------eEEEEECCCCeEEEEeecCC--
Q 024185 111 -AGAIKLFDSRSYDKGPFDTFLV--GGDTAEVCDIKFSNDGKSMLLTTTNN-------NIYVLDAYGGEKRCGFSLEP-- 178 (271)
Q Consensus 111 -d~~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~-- 178 (271)
+.++...|..+++. +....+ .-|...+..+++.++|..++..-..| -+-+++ .++.+..+....
T Consensus 136 M~psL~~ld~~sG~l--l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~ 211 (305)
T PF07433_consen 136 MQPSLVYLDARSGAL--LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQ 211 (305)
T ss_pred cCCceEEEecCCCce--eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHH
Confidence 23456667777775 444445 44778899999999987555443222 233333 233233333221
Q ss_pred ---CCCceeeEEECCCCCEEEEec-CCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcC
Q 024185 179 ---SPNTNTEATFTPDGQYVVSGS-GDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 179 ---~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~ 249 (271)
-..++-++++++++.++++.+ ..+.+.+||..+++.+....-. .+..++-.+++ ++++.+ |.+.....
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQLIRLSP 284 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCccEEEccC
Confidence 125688999999998876555 4689999999999998877543 35677777676 666655 65444433
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1e-09 Score=88.72 Aligned_cols=200 Identities=12% Similarity=0.167 Sum_probs=124.1
Q ss_pred eEEeeEEecCCchhhhhhhhhhc------cCceEEEEEecCcceeEEEecC--C---cceEEEcCCCCEEEEEecCCeEE
Q 024185 47 IRRGLFLSACLQLMIALCLVLLT------TALEYGIFVLMLASFQGILRLR--G---RPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~--~---~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
.+.-+.|||+.++++...----+ ....+.|||+.+|...+.+... . -+.+.||.|++++|--.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 35568899999994442100001 2257999999999988888763 2 244899999999887664 4577
Q ss_pred EEeCCCCCCCcceEEEec--C-----------------------------------------------------------
Q 024185 116 LFDSRSYDKGPFDTFLVG--G----------------------------------------------------------- 134 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~--~----------------------------------------------------------- 134 (271)
||+.....+ +....++ +
T Consensus 330 IyEtpsf~l--ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPSFML--LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCceee--ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 776543211 0000000 0
Q ss_pred -------C-----------------------------ccceEEEEEcCCCcEEEEEec---CCeEEEEECCC-Ce---EE
Q 024185 135 -------D-----------------------------TAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYG-GE---KR 171 (271)
Q Consensus 135 -------~-----------------------------~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~-~~---~~ 171 (271)
| ...|...+|-|.|+.+++-+. ..++.+|...+ .. .+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 0 034556677777766655433 34566666552 11 11
Q ss_pred EEeecCCCCCceeeEEECCCCCEEEEe---cCCCcEEEEEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC------
Q 024185 172 CGFSLEPSPNTNTEATFTPDGQYVVSG---SGDGTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS------ 241 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~------ 241 (271)
..+. . ...+.+.|+|.|++++.+ |..|.+.++|+........ ...|. ..+.+.|.|.|+|+++++
T Consensus 488 k~~d--k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 488 KELD--K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred hhhc--c--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhc
Confidence 2221 1 236779999999999866 4568899999875333222 23343 358899999999999986
Q ss_pred --CeEEEEcCCCCCC
Q 024185 242 --SVLSFWIPNPSSN 254 (271)
Q Consensus 242 --~~v~iw~~~~~~~ 254 (271)
..-++|++....+
T Consensus 563 ~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLL 577 (698)
T ss_pred cccceEEEEeecHHH
Confidence 2378998876543
No 277
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=7.9e-10 Score=83.38 Aligned_cols=203 Identities=11% Similarity=0.109 Sum_probs=134.0
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-----eeEEEecCC--------------cceEEEcCCC--C
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-----FQGILRLRG--------------RPTVAFDQQG--L 103 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~--------------~~~~~~~~~~--~ 103 (271)
...++++.|.-.|.+ +++|...|.|.+|.-+... ....+++|. +..+.|..++ .
T Consensus 26 ad~ItaVefd~tg~Y-----latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGLY-----LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEeccccce-----EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 456788899999998 8899999999999765432 122244442 4457776554 3
Q ss_pred EEEEEecCCeEEEEeCCCCCCC-----------------cc------e---------------EE-EecCCccceEEEEE
Q 024185 104 VFAVAMEAGAIKLFDSRSYDKG-----------------PF------D---------------TF-LVGGDTAEVCDIKF 144 (271)
Q Consensus 104 ~l~~~~~d~~i~i~d~~~~~~~-----------------~~------~---------------~~-~~~~~~~~v~~~~~ 144 (271)
.++..+.|.+|++|.+.....+ ++ . .. .-..|..-+.++.+
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 5677777999999987654110 00 0 00 01346667889999
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCeEEEE---eecCCCC---CceeeEEECCC-CCEEEEecCCCcEEEEEcCCcee---
Q 024185 145 SNDGKSMLLTTTNNNIYVLDAYGGEKRCG---FSLEPSP---NTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNE--- 214 (271)
Q Consensus 145 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~---~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--- 214 (271)
+.|...++++ .|-+|.+|++.-...... ++.+.-. ..|++..|+|. .+.+...+..|.|++-|++....
T Consensus 181 NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 181 NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9988877665 477899999864322111 2212111 23677889986 34566677789999999984322
Q ss_pred ---EEE----------ecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCC
Q 024185 215 ---VAC----------WNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 215 ---~~~----------~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~ 253 (271)
+.. +.+-...|..+.|+++|+++++-+ -++++||.+..+
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 111 111234688999999999999999 999999987643
No 278
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.17 E-value=4.4e-08 Score=74.94 Aligned_cols=182 Identities=14% Similarity=0.076 Sum_probs=115.9
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe-cCC--c-cceE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GGD--T-AEVC 140 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~--~-~~v~ 140 (271)
++.++.++.++.||..+|+.+..+............++..++++..++.++.+|..+++. .... ... . ....
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~ 114 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKV----LWSIYLTSSPPAGVRS 114 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCE----EEEEEE-SSCTCSTB-
T ss_pred EEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcce----eeeecccccccccccc
Confidence 445579999999999999988888764321111133455567777788999999999886 3331 211 0 1122
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC--c------eeeEEECCCCCEEEEecCCCcEEEEEcCCc
Q 024185 141 DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN--T------NTEATFTPDGQYVVSGSGDGTLHAWNINTR 212 (271)
Q Consensus 141 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 212 (271)
......++..++++..++.+..+|+++|+.+.......... . ...-....++ .++.++.++.+.-+|+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg 193 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG 193 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT
T ss_pred ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC
Confidence 22333347788888889999999999999988877644221 1 1122222344 6777777775444499999
Q ss_pred eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 213 NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+.+.... . ..+..+ ..+++..++.++ +.+..||+++++.
T Consensus 194 ~~~w~~~-~-~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 194 EKLWSKP-I-SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEEEEC-S-S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CEEEEec-C-CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 9775443 2 223331 345566666555 9999999999864
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.16 E-value=3.3e-07 Score=70.57 Aligned_cols=209 Identities=15% Similarity=0.163 Sum_probs=129.6
Q ss_pred ecceeEEee-ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEe-cCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 9 PITQALLFA-RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLS-ACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 9 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
+..+.|++. ..++.+..++...+.... +.... ...+.+. +++.+ +.+.. +.+.++|..+++...
T Consensus 9 ~~~g~l~~~D~~~~~i~~~~~~~~~~~~-----~~~~~--~~G~~~~~~~g~l------~v~~~-~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 9 PRDGRLYWVDIPGGRIYRVDPDTGEVEV-----IDLPG--PNGMAFDRPDGRL------YVADS-GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEE-----EESSS--EEEEEEECTTSEE------EEEET-TCEEEEETTTTEEEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCeEEE-----EecCC--CceEEEEccCCEE------EEEEc-CceEEEecCCCcEEE
Confidence 335566665 457888888877662211 22222 5556776 67665 23344 445566988886544
Q ss_pred EEec--C--C---cceEEEcCCCCEEEEEecC--------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEE
Q 024185 87 ILRL--R--G---RPTVAFDQQGLVFAVAMEA--------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSM 151 (271)
Q Consensus 87 ~~~~--~--~---~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 151 (271)
.... . . .+.+++.|+|++.++.... |.+..++.. ++. ..+...-.....++|+|+++.|
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-----~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-----TVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-----EEEEEEESSEEEEEEETTSSEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-----EEEecCcccccceEECCcchhe
Confidence 4432 1 1 3449999999966665433 567777777 442 1122223557899999999977
Q ss_pred EE-EecCCeEEEEECCCC-e-E--EEEe-ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCccee
Q 024185 152 LL-TTTNNNIYVLDAYGG-E-K--RCGF-SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVV 225 (271)
Q Consensus 152 ~~-~~~d~~i~~~d~~~~-~-~--~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 225 (271)
+. -+..+.|..+++... . . .+.+ .........-.++++.+|++.++....+.|.++|.. |+.+..+......+
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~ 227 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP 227 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE
Confidence 64 456888999998532 2 1 1222 222221236679999999988887788999999987 88888776554578
Q ss_pred EEEEEe-cCCcEEE
Q 024185 226 ACLKWA-PRRAMFV 238 (271)
Q Consensus 226 ~~~~~s-~~~~~l~ 238 (271)
++++|. |+.+.|.
T Consensus 228 t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 228 TNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEEEESTTSSEEE
T ss_pred EEEEEECCCCCEEE
Confidence 999995 5655443
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=3.8e-08 Score=88.27 Aligned_cols=199 Identities=10% Similarity=0.085 Sum_probs=132.0
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEE----EecCcceeEE-EecCCcceEEEcCCCCEEEEEecCCeEEEEe
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIF----VLMLASFQGI-LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iw----d~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d 118 (271)
..+.+.++.+-++... ++.+..+|.|.+. +..+...... .-..++.+++||||+..|+..+.++++.+-+
T Consensus 74 ~~~~ivs~~yl~d~~~-----l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-----LCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCc-----EEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 3456777888888776 6677888889888 5544432211 2334688999999999999999888887754
Q ss_pred CCC-------------CCCCcce------E-------------------------EEecCCccceEEEEEcCCCcEEEEE
Q 024185 119 SRS-------------YDKGPFD------T-------------------------FLVGGDTAEVCDIKFSNDGKSMLLT 154 (271)
Q Consensus 119 ~~~-------------~~~~~~~------~-------------------------~~~~~~~~~v~~~~~s~~~~~l~~~ 154 (271)
..- ++.+++. . ..+. ....-..++|-.||+++|+.
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEE
Confidence 210 0000000 0 0011 22345678999999999988
Q ss_pred ec---C---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC---CCcEEEEEcCCceeEEEe----cCC
Q 024185 155 TT---N---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNEVACW----NGN 221 (271)
Q Consensus 155 ~~---d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~----~~~ 221 (271)
+. . ..+++|+ ++|+...+-+.-.+ --.+++|.|.|+++|+... ...|.+|. ++|-....| ...
T Consensus 228 s~~~~~~~~R~iRVy~-ReG~L~stSE~v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYS-REGELQSTSEPVDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEEcCCCceeEEEEEC-CCceEEeccccCCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 74 2 5799999 55775444332222 2345899999999998765 34566666 344443333 234
Q ss_pred cceeEEEEEecCCcEEEEeC-CeEEEEcCCCC
Q 024185 222 IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPS 252 (271)
Q Consensus 222 ~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~ 252 (271)
...|..++|++|+..||..- ..|.+|...+.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY 335 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDRVQLWTRSNY 335 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCCceEEEeeCC
Confidence 56899999999999999876 67999987664
No 281
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.16 E-value=1.1e-09 Score=93.33 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=133.4
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
++-|+-...+..+|+++.+..+........+.-+..+++++.+|...|+|.+-|.++.+. ...+.+|.+.+.++..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~----iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFET----IHTFDAHSGSISDFDV 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCce----eeeeeccccceeeeec
Confidence 445555666777888888777776655433545556789999999999999999999887 7788899999987654
Q ss_pred cCCCcEEEEEec---------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCC-CCEEEEecCCCcEEEEEc---CC
Q 024185 145 SNDGKSMLLTTT---------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPD-GQYVVSGSGDGTLHAWNI---NT 211 (271)
Q Consensus 145 s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~---~~ 211 (271)
.|+.|++++. |..|++||+|..+.+.-+..+..+.. +.|+|. ...++.++..|...+.|. .+
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~f---lrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQF---LRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchh---hhhcccccceEEEEecccceeeccccccCC
Confidence 5788988874 66799999998887776666655422 778886 457888888999999994 33
Q ss_pred c-eeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcC
Q 024185 212 R-NEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIP 249 (271)
Q Consensus 212 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~ 249 (271)
. .-++.+......+..+.+|+++..++.+. |.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 12333344455599999999999999997 89999973
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=4.8e-08 Score=73.19 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=125.7
Q ss_pred eeecceeEEeeecceeeEEEEeeccceee-EEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee
Q 024185 7 ALPITQALLFARQNIILILLESLCGIYQC-MIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ 85 (271)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 85 (271)
++..+.+++....+-.+..-...+..... ...+.-+.....-..++||||+.. ||.+...|+|++||+.... +
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tl-----La~a~S~G~i~vfdl~g~~-l 77 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTL-----LAYAESTGTIRVFDLMGSE-L 77 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcE-----EEEEcCCCeEEEEecccce-e
Confidence 34455666666666555444333321111 122223333344556999999999 8889999999999996533 3
Q ss_pred EEEecC---------CcceEEEcCC---C---CEEEEEecCCeEEEEeCCCC---CCCcceEEEecCC-ccceEEEEEcC
Q 024185 86 GILRLR---------GRPTVAFDQQ---G---LVFAVAMEAGAIKLFDSRSY---DKGPFDTFLVGGD-TAEVCDIKFSN 146 (271)
Q Consensus 86 ~~~~~~---------~~~~~~~~~~---~---~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~-~~~v~~~~~s~ 146 (271)
..+... .+..+.|-+. . ..|++-...|.++-|-+..+ +......+.+..| ...|.++.|+|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 333221 1222444332 1 24566667888877765322 2112334455444 67899999999
Q ss_pred CCcEEEEEecC----C-------eEEEEECCCCeEE---------------------E--E---eec-CCCCCceeeEEE
Q 024185 147 DGKSMLLTTTN----N-------NIYVLDAYGGEKR---------------------C--G---FSL-EPSPNTNTEATF 188 (271)
Q Consensus 147 ~~~~l~~~~~d----~-------~i~~~d~~~~~~~---------------------~--~---~~~-~~~~~~v~~~~~ 188 (271)
..++|++|+.. + -+.-|.+-++.+- + . +.. ......|..+..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 99998887641 1 2555654222110 0 0 000 112245888999
Q ss_pred CCCCCEEEEecCCCcEEEEEcCCceeEEEecC
Q 024185 189 TPDGQYVVSGSGDGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 189 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 220 (271)
||||+.|++...+|.|.+|++.+-+....+.-
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999999998877776643
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=2.1e-08 Score=89.81 Aligned_cols=217 Identities=15% Similarity=0.142 Sum_probs=138.1
Q ss_pred EeeecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-----
Q 024185 6 FALPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM----- 80 (271)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~----- 80 (271)
--++..+.++++.++|.+..+..... .+...++....-+..+.+++||||+.. ++..+.++++.+.+-.
T Consensus 82 ~yl~d~~~l~~~~~~Gdi~~~~~~~~-~~~~~~E~VG~vd~GI~a~~WSPD~El-----la~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 82 QYLADSESLCIALASGDIILVREDPD-PDEDEIEIVGSVDSGILAASWSPDEEL-----LALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred EeccCCCcEEEEECCceEEEEEccCC-CCCceeEEEEEEcCcEEEEEECCCcCE-----EEEEeCCCEEEEEeccceEEE
Confidence 34456678889999999998832111 111233334556778999999999998 6666777877775321
Q ss_pred ----------C--------cceeEEEec------------C--------------CcceEEEcCCCCEEEEEec---C--
Q 024185 81 ----------L--------ASFQGILRL------------R--------------GRPTVAFDQQGLVFAVAME---A-- 111 (271)
Q Consensus 81 ----------~--------~~~~~~~~~------------~--------------~~~~~~~~~~~~~l~~~~~---d-- 111 (271)
. |+...+|++ . ....++|-.||.++|+.+- .
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~ 235 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGS 235 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCc
Confidence 0 011011111 0 1233889999999998864 2
Q ss_pred -CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecC--CCCCceee
Q 024185 112 -GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLE--PSPNTNTE 185 (271)
Q Consensus 112 -~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~--~~~~~v~~ 185 (271)
..+++|+.+ +.. ...-..-.+--.+++|-|.|+++|+.-. ...|.+|. ++|-.-..|... .....+..
T Consensus 236 ~R~iRVy~Re-G~L----~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 236 RRVIRVYSRE-GEL----QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred eeEEEEECCC-ceE----EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 478999976 443 2222222333457899999999988765 45677787 566555555543 23345899
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCcee--EEEecC-CcceeEEEEEecCCc
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNE--VACWNG-NIGVVACLKWAPRRA 235 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-~~~~v~~~~~s~~~~ 235 (271)
+.|++|+..|+....|. |.+|-..+-.- .+.+.- ....+..+.|+|...
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 99999999999877664 99999877442 223321 123345599999543
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.15 E-value=7.9e-10 Score=85.80 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=109.3
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc----eeEEEecCC-cceEEEcCCCCEEEEEecCC---eEEEEeC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS----FQGILRLRG-RPTVAFDQQGLVFAVAMEAG---AIKLFDS 119 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~---~i~i~d~ 119 (271)
......++.+++ ++.+..+....+++..... ......... ...+.+..+......+...| .+.+|..
T Consensus 65 ~~~~~~s~~~~l-----lAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRL-----VAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceE-----EEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 334556777777 6667777776677765433 233333332 33466666666555554444 4445554
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee-cCCCCCceeeEEECCCCCEEEEe
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS-LEPSPNTNTEATFTPDGQYVVSG 198 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 198 (271)
..+. ...+-||-..++.++|+||+++++++..|..|++-.....-.+..+. +|.. .|..++.-++. .|+++
T Consensus 140 ~~~~-----~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e--FVS~isl~~~~-~LlS~ 211 (390)
T KOG3914|consen 140 DSGR-----CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE--FVSTISLTDNY-LLLSG 211 (390)
T ss_pred cccC-----cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh--heeeeeeccCc-eeeec
Confidence 4433 33455899999999999999999999999999998877655555543 3554 48888887654 58999
Q ss_pred cCCCcEEEEEcCCceeEEEe
Q 024185 199 SGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 199 ~~dg~i~iwd~~~~~~~~~~ 218 (271)
+.|+++++||+.+|+.+.++
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCCcEEEEecccCCccccc
Confidence 99999999999999987654
No 285
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=8.2e-08 Score=76.38 Aligned_cols=185 Identities=10% Similarity=0.058 Sum_probs=124.4
Q ss_pred ceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEec----------CCeEEEEeCCCCCCCcceEEEecCC-----c
Q 024185 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAME----------AGAIKLFDSRSYDKGPFDTFLVGGD-----T 136 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~-----~ 136 (271)
++|.+.|.++++.+.++.....+...++||++.|+++.. +..|.+||..+.+. .....+... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCchhhcc
Confidence 889999999999999998665444349999998888754 78999999999876 222332211 1
Q ss_pred cceEEEEEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCC-----------------------------Cceee
Q 024185 137 AEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSP-----------------------------NTNTE 185 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~-----------------------------~~v~~ 185 (271)
.....++++|||+++++... +..+.+.|+.+++.+..+...... .....
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 22347899999999998763 689999999988766554321110 00011
Q ss_pred E--------------EECC-CCCEEEEecCCCcEEEEEcCC-----ceeEEEecC-------CcceeEEEEEecCCcEEE
Q 024185 186 A--------------TFTP-DGQYVVSGSGDGTLHAWNINT-----RNEVACWNG-------NIGVVACLKWAPRRAMFV 238 (271)
Q Consensus 186 ~--------------~~~~-~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~-------~~~~v~~~~~s~~~~~l~ 238 (271)
. .|.+ +|+++....+ |.|.+.|+.. .+....+.. ..+...-++++|+++.+.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 1223 7777776666 9999999643 222222211 223345599999988777
Q ss_pred EeC------------CeEEEEcCCCCCCCcCCC
Q 024185 239 AAS------------SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 239 ~~~------------~~v~iw~~~~~~~~~~~~ 259 (271)
... +.|.++|..+++......
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 631 569999999988776544
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=8.3e-08 Score=71.93 Aligned_cols=203 Identities=15% Similarity=0.175 Sum_probs=123.7
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEecCcc--eeEEEecC----Ccce-EEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLMLAS--FQGILRLR----GRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYD 123 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~----~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 123 (271)
++.+++|+.+ ..-.|..|.|-..++.- .+..-+.+ .-+. ++||||+..||.+...|+|+++|+....
T Consensus 3 ~~~~~~Gk~l------Ai~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLL------AILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEE------EEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 4566777753 33556666665443321 22222221 2233 9999999999999999999999998654
Q ss_pred CCcceE-EEe-cCCccceEEEEEcCCC------cEEEEEecCCeEEEEECCC-----CeEEEEeecCCC-CCceeeEEEC
Q 024185 124 KGPFDT-FLV-GGDTAEVCDIKFSNDG------KSMLLTTTNNNIYVLDAYG-----GEKRCGFSLEPS-PNTNTEATFT 189 (271)
Q Consensus 124 ~~~~~~-~~~-~~~~~~v~~~~~s~~~------~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~-~~~v~~~~~~ 189 (271)
.-.+.. ... ..-...|..+.|.+.. ..|++-..+|.++-|-+.. .+..+.+..... +..|.++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 300000 000 1112456667665531 2466666778877776532 234444443222 3459999999
Q ss_pred CCCCEEEEecCC----C-------cEEEEEcCCceeEEE--------------------e---------cCCcceeEEEE
Q 024185 190 PDGQYVVSGSGD----G-------TLHAWNINTRNEVAC--------------------W---------NGNIGVVACLK 229 (271)
Q Consensus 190 ~~~~~l~~~~~d----g-------~i~iwd~~~~~~~~~--------------------~---------~~~~~~v~~~~ 229 (271)
|..++|+.|+.. + -+.-|.+-++.+-.. + ......|..|.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 998888877542 1 255665433221110 0 11245689999
Q ss_pred EecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 230 WAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 230 ~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
.||||..|++.. |.|.+|++.+-+++..-.
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 999999999997 999999999987766544
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.09 E-value=1.8e-07 Score=72.07 Aligned_cols=196 Identities=16% Similarity=0.193 Sum_probs=123.5
Q ss_pred eeEEec-CCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEc-CCCCEEEEEecCCeEEEEeCCCCCCCcc
Q 024185 50 GLFLSA-CLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFD-QQGLVFAVAMEAGAIKLFDSRSYDKGPF 127 (271)
Q Consensus 50 ~~~~s~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 127 (271)
+..|.+ ++.+ +++--..+.|..|+..+++. ..+.......+++. +++ .++.+... .+.++|..+++...+
T Consensus 4 gp~~d~~~g~l-----~~~D~~~~~i~~~~~~~~~~-~~~~~~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRL-----YWVDIPGGRIYRVDPDTGEV-EVIDLPGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEE-----EEEETTTTEEEEEETTTTEE-EEEESSSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEE-----EEEEcCCCEEEEEECCCCeE-EEEecCCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence 356776 5555 45666788999999977664 33444445567887 564 45555544 455669888764222
Q ss_pred eEEEecC-CccceEEEEEcCCCcEEEEEecC--------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE-E
Q 024185 128 DTFLVGG-DTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV-S 197 (271)
Q Consensus 128 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 197 (271)
....... .......+++.|+|++.++.... |.+..++.. ++.......-. ....++|+|+++.|+ +
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEEEEEEETTSSEEEEE
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---cccceEECCcchheeec
Confidence 2221122 34678899999999966665532 568888876 55444333322 267799999999776 5
Q ss_pred ecCCCcEEEEEcCCce-------eEEEecCCcceeEEEEEecCCcEEEEe--CCeEEEEcCCCCCCCcCC
Q 024185 198 GSGDGTLHAWNINTRN-------EVACWNGNIGVVACLKWAPRRAMFVAA--SSVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~v~iw~~~~~~~~~~~ 258 (271)
-+..+.|..+++.... ....+....+..-.+++..+|++.++. ++.|.+++.+ +++....
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 5667889999986322 122233333347889999999977764 3889999988 6655443
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.9e-09 Score=83.34 Aligned_cols=231 Identities=13% Similarity=0.114 Sum_probs=160.3
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhcc-CceEEEEEecCcceeEEEecCCcce-EE
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTT-ALEYGIFVLMLASFQGILRLRGRPT-VA 97 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~ 97 (271)
+|.+..|.... ..-...+..+..|.+.+.+++.+-++.. +.|.+. |..++++|+++-.....++....+- +.
T Consensus 29 DGh~KFWkKs~-isGvEfVKhFraHL~~I~sl~~S~dg~L-----~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~ 102 (558)
T KOG0882|consen 29 DGHKKFWKKSR-ISGVEFVKHFRAHLGVILSLAVSYDGWL-----FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE 102 (558)
T ss_pred chhhhhcCCCC-ccceeehhhhHHHHHHHHhhhcccccee-----EeeccCcccceeEEEeeccchhhhcccccCCCceE
Confidence 44444444322 1123456677888888999999999987 778676 9999999999877665554443222 33
Q ss_pred E-cCCC---CEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC-----
Q 024185 98 F-DQQG---LVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG----- 167 (271)
Q Consensus 98 ~-~~~~---~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~----- 167 (271)
| ...| ..++++ ..++.+.++|-....+.. ....+-|..+|.++.++|.+..+.+....|.|.-|....
T Consensus 103 wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 103 WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred EecCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 3 2233 244444 567899999987655422 333456889999999999999999998899999999762
Q ss_pred -CeEEEEee-------cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--------------------
Q 024185 168 -GEKRCGFS-------LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-------------------- 219 (271)
Q Consensus 168 -~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------- 219 (271)
.+....++ .........++.|+|+|..+.+-+.|..|++++.++++.++.+.
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 11111111 11112346789999999999999999999999999988765432
Q ss_pred ------------CCcc-eeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCC
Q 024185 220 ------------GNIG-VVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 220 ------------~~~~-~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
.|.. .-+.+.|...|++|+-++ =-|++.++.++++.+..
T Consensus 261 lgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 261 LGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 1211 234677888899999998 66899999988766543
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.06 E-value=7.8e-08 Score=77.26 Aligned_cols=203 Identities=14% Similarity=0.077 Sum_probs=138.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC---------
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA--------- 111 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 111 (271)
+....-.+....+||.|.+ |++.. ...|.+|+-.....+..+....+.-+.|+|++++|.+-+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~-----l~~~~-~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 28 FESENWPVAYVSESPLGTY-----LFSEH-AAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred ccccCcchhheeecCcchh-----eehhh-ccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhcc
Confidence 4445667788999999998 44444 44588999888887778888888889999999999986543
Q ss_pred ------CeEEEEeCCCCCC--------Cc-----ceEEEec--------C-----Cc---------------cceEEEEE
Q 024185 112 ------GAIKLFDSRSYDK--------GP-----FDTFLVG--------G-----DT---------------AEVCDIKF 144 (271)
Q Consensus 112 ------~~i~i~d~~~~~~--------~~-----~~~~~~~--------~-----~~---------------~~v~~~~~ 144 (271)
..+.+||..++.. .+ +..+... + |. ..+....|
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 2499999987653 00 1111100 0 11 45777888
Q ss_pred cCCC--cEEEE-----EecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEec-----------CCCcEEE
Q 024185 145 SNDG--KSMLL-----TTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGS-----------GDGTLHA 206 (271)
Q Consensus 145 s~~~--~~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~i 206 (271)
+|.+ ..|+. .+..+.+++|.+..++.+.+....... -..+.|.+.|++++.-- ....+++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~--~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS--GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec--ccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 8853 33443 345788999998877666553332222 33488999999876321 1246888
Q ss_pred EEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC----CeEEEEcCCCC
Q 024185 207 WNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS----SVLSFWIPNPS 252 (271)
Q Consensus 207 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~v~iw~~~~~ 252 (271)
+++....+.... .-.++|...+|.|.++.+++.+ ..+.++|++..
T Consensus 260 ~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 260 LRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred Eeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 888744444433 5678999999999998887776 45888888776
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.8e-07 Score=85.48 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=124.4
Q ss_pred eeEEecC-CchhhhhhhhhhccCceEEEEEecCcceeEEEec--C--------------CcceEEEcCCCCEEEEEe-cC
Q 024185 50 GLFLSAC-LQLMIALCLVLLTTALEYGIFVLMLASFQGILRL--R--------------GRPTVAFDQQGLVFAVAM-EA 111 (271)
Q Consensus 50 ~~~~s~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~l~~~~-~d 111 (271)
.+++++. +.. +++-...+.|+++|.. +..+..+.. . ....++++++++.|+++. .+
T Consensus 572 gvavd~~~g~l-----yVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 572 KLAIDLLNNRL-----FISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred eEEEECCCCeE-----EEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 4677765 444 5577788899999985 444433322 0 124489999888777764 45
Q ss_pred CeEEEEeCCCCCCCcceEEEecCC---------------ccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGD---------------TAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~---------------~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
+.|+.+|..++.. ..+.-.+. -.....++++| ++..+++.+.++.|++||..++... .+.
T Consensus 646 ~~Ir~id~~~~~V---~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 646 HALREIDFVNETV---RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred ceEEEEecCCCEE---EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence 6899999876542 11110000 11245789999 5566666677899999998877543 222
Q ss_pred cCC-------------CCCceeeEEECCCCCEEE-EecCCCcEEEEEcCCceeEEEec-------------CC-------
Q 024185 176 LEP-------------SPNTNTEATFTPDGQYVV-SGSGDGTLHAWNINTRNEVACWN-------------GN------- 221 (271)
Q Consensus 176 ~~~-------------~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-------------~~------- 221 (271)
+.. .-.....++++|+++.|+ +-+.++.|++||+.++....... .+
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 110 002345699999998554 55567899999998765321110 00
Q ss_pred -cceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 222 -IGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 222 -~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
-....+++++++|+++++-+ +.|++||..++...
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 11236889999998777665 78999999876543
No 291
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=6.8e-08 Score=79.22 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=114.3
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcc-------eEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEec--CC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRP-------TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVG--GD 135 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~ 135 (271)
++.++.+|.++.||.++|+.+..++..... ..... +..++.+..++.+..+|.++++. ..... ..
T Consensus 148 v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~----~W~~~~~~~ 221 (377)
T TIGR03300 148 VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQP----LWEQRVALP 221 (377)
T ss_pred EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCE----eeeeccccC
Confidence 345677899999999999987776543211 11221 24677888889999999988875 22211 00
Q ss_pred cc--c---eEEEEEcC--CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 136 TA--E---VCDIKFSN--DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 136 ~~--~---v~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
.+ . ...+.-+| .+..+++++.+|.++.||..+++.+....... ...+. .++..++.++.+|.+..+|
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPA--VDDNRLYVTDADGVVVALD 295 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCce--EeCCEEEEECCCCeEEEEE
Confidence 00 0 00111111 24578888889999999999998877654221 11122 2456788888999999999
Q ss_pred cCCceeEEEecCCc-ceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCC
Q 024185 209 INTRNEVACWNGNI-GVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 209 ~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~ 258 (271)
..+++.+....... ....+... .+..+++++ |.+.++|..+++.+...
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 99998876653221 11222222 345566655 88999999988876443
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.03 E-value=1.5e-07 Score=77.27 Aligned_cols=219 Identities=11% Similarity=0.037 Sum_probs=131.1
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.++++..++.+..++..+|.. +-.+............ ++.. ++.++.++.++.+|.++|+.+......
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~----~W~~~~~~~~~~~p~v--~~~~-----v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKR----LWRVDLDERLSGGVGA--DGGL-----VFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcE----eeeecCCCCcccceEE--cCCE-----EEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 4556666678888888777732 1112222221112222 2343 456778999999999999987766543
Q ss_pred Cc-ce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccce-----EEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 92 GR-PT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEV-----CDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 92 ~~-~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
.. .. ... .+..++.+..++.++.+|.++++. ........... .+.... + ..++.+..++.+..+|
T Consensus 135 ~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 135 SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALD 206 (377)
T ss_pred ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEE
Confidence 31 11 112 345677788899999999998886 33332221111 111111 2 4677888889999999
Q ss_pred CCCCeEEEEeecCCCC--Cc------e-eeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCc
Q 024185 165 AYGGEKRCGFSLEPSP--NT------N-TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRA 235 (271)
Q Consensus 165 ~~~~~~~~~~~~~~~~--~~------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 235 (271)
.++|+.+......... .. + ....+ .+..++.++.+|.++.+|..+++.+...... . ...+.. ++.
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~~--~~~ 280 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPAV--DDN 280 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCceE--eCC
Confidence 9999876654321110 00 0 11112 2457788888999999999999887766521 1 122222 344
Q ss_pred EEEEeC--CeEEEEcCCCCCCC
Q 024185 236 MFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 236 ~l~~~~--~~v~iw~~~~~~~~ 255 (271)
.++.++ |.+..+|..+++.+
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred EEEEECCCCeEEEEECCCCcEE
Confidence 444443 88999999888754
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.03 E-value=9.9e-08 Score=76.69 Aligned_cols=198 Identities=14% Similarity=0.143 Sum_probs=132.2
Q ss_pred ceEEeeEEecCCchh--hhhhhhhhccCceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEe-----------c
Q 024185 46 GIRRGLFLSACLQLM--IALCLVLLTTALEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAM-----------E 110 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------~ 110 (271)
..+....++|.++.- ++..-=..+..+.+++|.+..+..+.+-..- ....+.|.+.|++|+.-. .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 345556777764331 1100113466788999988766655443332 223489999998776421 1
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe--cCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT--TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
..++++++++.... ... ..-.++|..+.|.|.++.+++.+ .+..+.++|++.. ....+. ... =..+.|
T Consensus 254 esnLyl~~~~e~~i----~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~--rNT~~f 323 (561)
T COG5354 254 ESNLYLLRITERSI----PVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQK--RNTIFF 323 (561)
T ss_pred cceEEEEeeccccc----cee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--Ccc--cccccc
Confidence 35788999885543 111 14468999999999988877654 6888999999866 333332 222 233889
Q ss_pred CCCCCEEEEecCC---CcEEEEEcCCceeEE-EecCCcceeEEEEEecCCcEEEEeC--------CeEEEEcCCCCCCC
Q 024185 189 TPDGQYVVSGSGD---GTLHAWNINTRNEVA-CWNGNIGVVACLKWAPRRAMFVAAS--------SVLSFWIPNPSSNS 255 (271)
Q Consensus 189 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~--------~~v~iw~~~~~~~~ 255 (271)
+|.+++++.++-| |.+-+||........ .+.+.+. +-+.|+||+.++.+.- +.++|||+...+.-
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 9999999987765 789999988765554 6655443 5678999999887763 45999999775543
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=3e-09 Score=88.72 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=120.8
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC----Cc-------ceEEEecCCccceEEEEEcCCCcEEEEEecCCeEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK----GP-------FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIY 161 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 161 (271)
..|++|+.+..++++|+.||.+++..+.+... .+ .-...+.||.+.|.-+.|+.+.+.|-+...+|-|.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 46799999999999999999999998765332 11 11234789999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE--EecCCcceeEEEEEecCCcEEEE
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA--CWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+|-+-.+.-...+........|.+++|+.||..+...-.||.|.+=.+..+ .+. .+++ .-...+.|++|.+.++.
T Consensus 97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg--~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-RIWGKELKG--QLLAHVLWSEDLEQALF 173 (1189)
T ss_pred EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-eecchhcch--heccceeecccHHHHHh
Confidence 999988766555544555566999999999999999999999888776533 332 2222 22457889999886655
Q ss_pred eC--CeEEEEcCCCC
Q 024185 240 AS--SVLSFWIPNPS 252 (271)
Q Consensus 240 ~~--~~v~iw~~~~~ 252 (271)
+- |...+||.+..
T Consensus 174 ~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGN 188 (1189)
T ss_pred hhcCCcEEEeccccc
Confidence 53 88999987653
No 295
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=1.5e-10 Score=98.36 Aligned_cols=201 Identities=16% Similarity=0.173 Sum_probs=146.7
Q ss_pred EEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCC--
Q 024185 37 IIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAG-- 112 (271)
Q Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~-- 112 (271)
.++.|+.++...+|++|+.+.++ ++.|+..|.|++++..+|.......+|+... +.-+.||..+.+.+.-.
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~h-----L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNH-----LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cchhhhccccceeeEEeecCCce-----EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 34567888899999999999998 8899999999999999999998898886443 77777888776654333
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC--CceeeEEECC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP--NTNTEATFTP 190 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~v~~~~~~~ 190 (271)
-..+|++..-- .+ ...+ ..-.++.|+.....-+.|.......+||+.++.++.++-..... ..-....|+|
T Consensus 1168 lsaLW~~~s~~-~~--~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1168 LSALWDASSTG-GP--RHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred hHHHhcccccc-Cc--cccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 46789987522 12 2222 34578899987666666766678999999999877763222111 1124588999
Q ss_pred CCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeCCeEEEEcCCCCCCCcCC
Q 024185 191 DGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 191 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~~~~ 258 (271)
+.++++- || .+||++..+.++.|......+ .=.|+|.|.-++.-+ .|||+++.+++...
T Consensus 1241 ~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS---EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1241 CDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS---EIWDMRTFKLLHSV 1299 (1516)
T ss_pred CcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec---hhhhhHHHHHHhcC
Confidence 9988774 33 489999888888776444222 335999999888877 68999998776543
No 296
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.98 E-value=3.1e-08 Score=81.25 Aligned_cols=191 Identities=18% Similarity=0.235 Sum_probs=124.1
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCc-ceEEEcCCCCEEEEE-ecCC--eEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGR-PTVAFDQQGLVFAVA-MEAG--AIKL 116 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~d~--~i~i 116 (271)
+......+..-.|+|+++.+++..+..+.. ..+.++|+++++....+...+. ...+|+|||++|+.+ ..|| .|++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~-~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGC-PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCC-ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 444455666678899998755521111111 5689999999887766665443 348999999987766 4455 5666
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CC--eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN--NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQ 193 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 193 (271)
+|+.+... ..+....+.-..-.|+|||++++..+. .| .|.++|...+.. ..+...... -....|+|||+
T Consensus 267 ~dl~~~~~-----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~--~~~p~~SpdG~ 338 (425)
T COG0823 267 MDLDGKNL-----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG--NSNPVWSPDGD 338 (425)
T ss_pred EcCCCCcc-----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC--CcCccCCCCCC
Confidence 77776653 223333344447789999999987765 33 477777766554 444433333 22588999999
Q ss_pred EEEEecC-CCc--EEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 194 YVVSGSG-DGT--LHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 194 ~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+++..+. +|. |.+.|+.++...+.+. .........|.|+|+.+...+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 9987764 344 7777777666544443 334455678889988777665
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.97 E-value=9.9e-09 Score=75.62 Aligned_cols=162 Identities=11% Similarity=0.009 Sum_probs=101.5
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-EEEecC--CcceEEEcCCCCEEEEEe-----c
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-GILRLR--GRPTVAFDQQGLVFAVAM-----E 110 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~-----~ 110 (271)
..+..+.+.-.+-+.+-.+.. ++.+..||.+.+++.+....+ ..+... +....+....++.+.++. .
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~-----V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNR-----VCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNA 157 (319)
T ss_pred eeeeccCCCCCcccccccCCc-----eEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEee
Confidence 334444444443344444444 778999999999988762211 111111 111233334455444432 2
Q ss_pred CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEE
Q 024185 111 AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATF 188 (271)
Q Consensus 111 d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~ 188 (271)
-+..++|+++..+........ ...|.+++-+|. .+.++.|+.||.+.+||.++..... .+..|..+ +..+.|
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~----~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~--i~eV~F 231 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKA----LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE--IWEVHF 231 (319)
T ss_pred ccceeeecccccccccccccc----cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh--hhheec
Confidence 346777777655431122222 234999999995 4566778889999999999875433 35667665 888999
Q ss_pred CCC-CCEEEEecCCCcEEEEEcCC
Q 024185 189 TPD-GQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 189 ~~~-~~~l~~~~~dg~i~iwd~~~ 211 (271)
+|. +..|+++++||.+.-||..+
T Consensus 232 Hpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCchheeEecCCCcEEEEcCCC
Confidence 985 67899999999999999763
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3.8e-08 Score=83.14 Aligned_cols=171 Identities=10% Similarity=0.069 Sum_probs=122.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
|+-|+.+|.+++.+... .. .+.-.|... ..+|.++++|+.||.|.|-.+-+.+. .....+ ..++.++++
T Consensus 52 ~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~--~~~~df---~rpiksial 120 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQG-NP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE--ITQYDF---KRPIKSIAL 120 (846)
T ss_pred eeeccccceEEEEecCC-cc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc--ceeEec---CCcceeEEe
Confidence 67888899999988743 32 222222211 66899999999999999999888775 223332 368999999
Q ss_pred cCC-----CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 145 SND-----GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 145 s~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
+|+ .+.+++|+..| +.++.-+--........+...+.|.++.|. |+++|.++.+| |++||+.+++.+..++
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccC
Confidence 998 56789999888 888764322222223345555679999995 77999999887 9999999988887765
Q ss_pred CCcce------eEEEEEecCCcEEEEeCCeEEEEcCC
Q 024185 220 GNIGV------VACLKWAPRRAMFVAASSVLSFWIPN 250 (271)
Q Consensus 220 ~~~~~------v~~~~~s~~~~~l~~~~~~v~iw~~~ 250 (271)
..... -..+.|.++.++++--+.+|+|..++
T Consensus 197 ~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 197 PPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred CCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 43322 24678887776666556789999887
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=4.2e-08 Score=79.64 Aligned_cols=195 Identities=12% Similarity=0.020 Sum_probs=136.0
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEec-----------CCeEEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAME-----------AGAIKL 116 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------d~~i~i 116 (271)
-+-+.|||.|.+ |++-...| |.+|--++-..++.+...++..+.|||+.+||++-+. ...+.|
T Consensus 213 etyv~wSP~GTY-----L~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTY-----LVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceE-----EEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 345889999999 55555555 7899777777778888888888999999999998642 257999
Q ss_pred EeCCCCCCCcceEEEe-cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE
Q 024185 117 FDSRSYDKGPFDTFLV-GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV 195 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (271)
||+.++.. ...+.. ......-.-+.||.|++++|--.. ..|.+|+..+..++..-...- ..|....|+|.++.|
T Consensus 287 WDI~tG~l--krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 287 WDIATGLL--KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--SGIRDFSWSPTSNLL 361 (698)
T ss_pred EEccccch--hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC--ccccCcccCCCcceE
Confidence 99999886 222222 112222345789999999987666 479999977644433222222 238889999999988
Q ss_pred EEecC-----CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe----------C--CeEEEEcCCCCC
Q 024185 196 VSGSG-----DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA----------S--SVLSFWIPNPSS 253 (271)
Q Consensus 196 ~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----------~--~~v~iw~~~~~~ 253 (271)
|.=.. -..+.+..+.+++.+++..-+.-.-..+-|-.+|.+|+.- + .++.|+.++...
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd 436 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD 436 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence 85432 2367788888888887766555444567788888888753 1 346677766543
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=3.2e-08 Score=82.77 Aligned_cols=218 Identities=12% Similarity=0.091 Sum_probs=146.7
Q ss_pred eEEeeecceeeEEEEeecccee-----------eEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC
Q 024185 13 ALLFARQNIILILLESLCGIYQ-----------CMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML 81 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~ 81 (271)
.+..+..+|.+..+...+...+ ...-+.+++|++.|..+.|+.+.+. +-+...+|.|.+|-+-+
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-----LTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-----LTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-----ccccCCCceEEEEeeec
Confidence 3455666776666554332111 1133457899999999999999888 77889999999999877
Q ss_pred cceeEEE-e---cCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC
Q 024185 82 ASFQGIL-R---LRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 82 ~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 157 (271)
|...... . ...+.+++|+.||..++....||.|.+=.++..+. --..+++ .....+.|++|.+.++.+-.+
T Consensus 103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI---wgKeLkg--~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI---WGKELKG--QLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee---cchhcch--heccceeecccHHHHHhhhcC
Confidence 7533222 1 11245699999999999999999998887776542 1112222 234578899999999999899
Q ss_pred CeEEEEECCCC-------eEEEEeec--CCCCCceeeEEEC--------CCCCEEEEecCCCcEEEEEcCCceeEEEecC
Q 024185 158 NNIYVLDAYGG-------EKRCGFSL--EPSPNTNTEATFT--------PDGQYVVSGSGDGTLHAWNINTRNEVACWNG 220 (271)
Q Consensus 158 ~~i~~~d~~~~-------~~~~~~~~--~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 220 (271)
|.+.+||.... .+.-...+ ...+..+..+.|. ||...++.+-.+|.+.|..-.+......+..
T Consensus 178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt 257 (1189)
T KOG2041|consen 178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT 257 (1189)
T ss_pred CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence 99999996432 11111111 0011124445553 5788999999999988875444333333432
Q ss_pred CcceeEEEEEecCCcEEEEeC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~ 241 (271)
...+....|+|+|..|+.++
T Consensus 258 -gm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 258 -GMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred -ccEeecceecCCCcEEEEcc
Confidence 35688999999999999886
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=5.8e-09 Score=87.22 Aligned_cols=229 Identities=12% Similarity=0.105 Sum_probs=147.2
Q ss_pred EEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcc-eeEEEec-C
Q 024185 14 LLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS-FQGILRL-R 91 (271)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~ 91 (271)
-++..++-..+.++......+ ...-.+.+|..++..+-|.|...-+ +++++.|..+..||+++.. ++..+.. +
T Consensus 84 wiVsts~qkaiiwnlA~ss~~-aIef~lhghsraitd~n~~~q~pdV----latcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSSN-AIEFVLHGHSRAITDINFNPQHPDV----LATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred eEEecCcchhhhhhhhcCCcc-ceEEEEecCccceeccccCCCCCcc----eeeccccccceeeeccCCCcceeeeeccc
Confidence 344444444444444333222 2233467889999999999988765 7799999999999998765 3443332 2
Q ss_pred -CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEECCCCe
Q 024185 92 -GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
..+.++|+-....+.+.+....|.+||.+.+.. ....+++|...+..++|+. -...+.+.+.|++|+.||.....
T Consensus 159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ccCceeeecccCcchhhhccCCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 345599987555555556677899999998763 3556778989999999876 23457889999999999986543
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEe--cCCCcEEEE---------EcCC-ceeEEEecCCcceeEEEEEecCCc--
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAW---------NINT-RNEVACWNGNIGVVACLKWAPRRA-- 235 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw---------d~~~-~~~~~~~~~~~~~v~~~~~s~~~~-- 235 (271)
.......... ..+...++-|-|+-...- -.+..+.++ +..+ .++++++.||...|....|-..+.
T Consensus 236 ~e~~~~vtt~-~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~ 314 (1081)
T KOG0309|consen 236 TESKRTVTTN-FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD 314 (1081)
T ss_pred cccceecccc-CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc
Confidence 2221111111 225556666655422211 112233333 3332 467889999998887766654222
Q ss_pred --------EEEEeC--CeEEEEcCCC
Q 024185 236 --------MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 236 --------~l~~~~--~~v~iw~~~~ 251 (271)
.|++-| .++++|-+..
T Consensus 315 ~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 315 GDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCCccceeEEEeecCCceEeeeccH
Confidence 688887 6799998765
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=5.8e-09 Score=79.75 Aligned_cols=166 Identities=11% Similarity=0.120 Sum_probs=116.8
Q ss_pred eEEEecCCcceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 85 QGILRLRGRPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
...++....+.++|+-+-. +-++.+.+..+-+-|++++-. ..+. ..+.|.++.|...++++..|..+|.|..+
T Consensus 206 ~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~-----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~i 279 (425)
T KOG2695|consen 206 LCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVI 279 (425)
T ss_pred eeeecCCcchhhhhhhccceeeecccccceeEEEEeecccc-----cccc-cchhHHHHHhcccCCeeEecccCCcEEEE
Confidence 3445555555567775432 224445577888999988763 2222 45779999999989999999999999999
Q ss_pred ECCCC-----eEEEEeecCCCCCceeeEEECC-CCCEEEEecCCCcEEEEEcCCcee---EEEecCCcceeEEEE--Eec
Q 024185 164 DAYGG-----EKRCGFSLEPSPNTNTEATFTP-DGQYVVSGSGDGTLHAWNINTRNE---VACWNGNIGVVACLK--WAP 232 (271)
Q Consensus 164 d~~~~-----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~--~s~ 232 (271)
|++.+ .+.+.+. |... ++++..-. ++++|.+.+.+|.|++||++--++ +.++.+|-..-.-+- ..+
T Consensus 280 DLR~rnqG~~~~a~rly-h~Ss--vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ 356 (425)
T KOG2695|consen 280 DLRCRNQGNGWCAQRLY-HDSS--VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE 356 (425)
T ss_pred EeeecccCCCcceEEEE-cCcc--hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc
Confidence 99865 2333333 4443 77776654 778999999999999999987666 888888854333332 344
Q ss_pred CCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 233 RRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 233 ~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
....+++++ .-.+||.++.+.++.+..
T Consensus 357 eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 357 EEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccceEEEccCeeEEEEEecccCceeeccC
Confidence 555677666 559999999988876654
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=2.2e-07 Score=71.06 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=112.7
Q ss_pred CceEEEEEecCcceeEEEecCC-cce-E-EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 71 ALEYGIFVLMLASFQGILRLRG-RPT-V-AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~-~~~-~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
+|.|..||..+|+.+....... ... + ...+++..+++++.++.++.||..+++. ...... ...+.... ..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~----~W~~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV----LWRFDL-PGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE----EEEEEC-SSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE----EEEeec-ccccccee-eec
Confidence 6889999999999988886532 222 2 2344677788888999999999999886 333322 11111111 223
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEe-ecCCCC-CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcce-
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGF-SLEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGV- 224 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 224 (271)
+..+++++.++.+..+|..+|+.+... ...... ..........+++.++.+..++.|..+|+++|+.+.........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 455777778889999999999998884 333111 11122333334778888888999999999999998877554322
Q ss_pred ---------eEEEEEecCCcEEEEeC-Ce-EEEEcCCCCCC
Q 024185 225 ---------VACLKWAPRRAMFVAAS-SV-LSFWIPNPSSN 254 (271)
Q Consensus 225 ---------v~~~~~s~~~~~l~~~~-~~-v~iw~~~~~~~ 254 (271)
+..-....++..+++.. +. +.+ |.++++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~ 195 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEK 195 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEE
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCE
Confidence 11222223455555544 54 555 8888873
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=6.7e-09 Score=84.34 Aligned_cols=170 Identities=14% Similarity=0.145 Sum_probs=120.1
Q ss_pred eEEEecCC--cceEEEcCCCCEEEEEecCCeEEEEeCCCCCC---CcceEEEecCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 85 QGILRLRG--RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
++.+.+|. +..++--.+.+-+++++.|.+|++|.++...- .....+++..|+.+|.++.|-.+-+++++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 34455663 33433334566789999999999999864221 11246788899999999999998877664 5889
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECC--CCCEEEEe-cCCCcEEEEEcCCceeEEEe-----cCCcceeEEEEEe
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTP--DGQYVVSG-SGDGTLHAWNINTRNEVACW-----NGNIGVVACLKWA 231 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s 231 (271)
|.+||.--++.+.........+.+..+.--| +...+..| +...+++++|.+.++-..++ .+.++.+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987777766443322222222233333 34455555 55789999999988776655 3455678999999
Q ss_pred cCCcEEEEe-C-CeEEEEcCCCCCCCc
Q 024185 232 PRRAMFVAA-S-SVLSFWIPNPSSNST 256 (271)
Q Consensus 232 ~~~~~l~~~-~-~~v~iw~~~~~~~~~ 256 (271)
|.|+.++.+ + |.+.+.|.++++.+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceec
Confidence 999999887 3 999999999998765
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=5.5e-08 Score=81.60 Aligned_cols=200 Identities=13% Similarity=0.178 Sum_probs=136.2
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC-cceeEEEec---CCcceEEEcCCC--CEEEEEecCCeEEEEe
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML-ASFQGILRL---RGRPTVAFDQQG--LVFAVAMEAGAIKLFD 118 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~---~~~~~~~~~~~~--~~l~~~~~d~~i~i~d 118 (271)
.+.+..+.++|.|+- ++.++.-| +.+.|+.. +.+..-+.. -.+....|+|.. .+-++......-.+|+
T Consensus 24 ~~~~~a~si~p~grd-----i~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRD-----IVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccch-----hhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 345667889999998 67777777 44556653 333333322 234447887754 3444444455666898
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCC-CcEEEEEecCCeEEEEECCCCeE-EEEeecCCCCCceeeEEECCCCCEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSND-GKSMLLTTTNNNIYVLDAYGGEK-RCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
+..... ....+.+.+|...++.+.|+|. ...+++++.|..+..||+++... +..+..-.. ....+.|+.....+.
T Consensus 98 lA~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s--~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 98 LAKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS--AASQVKWNYKDPNVL 174 (1081)
T ss_pred hhcCCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc--cCceeeecccCcchh
Confidence 864332 1236678899999999999995 45678899999999999987643 333332222 245589987655566
Q ss_pred EecCCCcEEEEEcCCc-eeEEEecCCcceeEEEEEecCC-cEEEEeC--CeEEEEcCCCCC
Q 024185 197 SGSGDGTLHAWNINTR-NEVACWNGNIGVVACLKWAPRR-AMFVAAS--SVLSFWIPNPSS 253 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~~v~iw~~~~~~ 253 (271)
+.+..+.|.+||.+.| .++..+++|-..|+.++|..-- ..+.+++ ++|+.||.+...
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 6666778999999865 5678889999999999987632 2344444 999999987654
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.84 E-value=1.4e-08 Score=74.84 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=95.2
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-----CCeEEEEECCCCeEE
Q 024185 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-----NNNIYVLDAYGGEKR 171 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~~~~~ 171 (271)
+.+--++.++++..||.+.+++.+.... ...+.......-.+.++...++.+.++.. -+..+.|+++..+.+
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~---~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLA---LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHh---hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccc
Confidence 3344466799999999999999876221 11111111122223334444555544321 234566666543332
Q ss_pred EEeecCCCCCceeeEEECCCCC-EEEEecCCCcEEEEEcCCceeEE-EecCCcceeEEEEEec-CCcEEEEeC--CeEEE
Q 024185 172 CGFSLEPSPNTNTEATFTPDGQ-YVVSGSGDGTLHAWNINTRNEVA-CWNGNIGVVACLKWAP-RRAMFVAAS--SVLSF 246 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~--~~v~i 246 (271)
..-.... ..+.+++-+|..+ .+++|+.||.+.+||.++...+. .+..|+.+++.+-|+| ++..|++++ |.+--
T Consensus 173 ~~~~~~~--~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 173 IPSKKAL--DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred ccccccc--ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 2211111 2388888898754 56678889999999999875443 4578999999999999 566788887 88999
Q ss_pred EcCCC
Q 024185 247 WIPNP 251 (271)
Q Consensus 247 w~~~~ 251 (271)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99875
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=2e-08 Score=53.28 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=33.9
Q ss_pred EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 129 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 129 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
...+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 556789999999999999999999999999999997
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.6e-08 Score=53.72 Aligned_cols=39 Identities=33% Similarity=0.684 Sum_probs=35.6
Q ss_pred CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 168 GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
++++.++..|... |.+++|+|+++++++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~--i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS--INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS--EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCc--EEEEEEecccccceeeCCCCEEEEEC
Confidence 3677888888877 99999999999999999999999997
No 309
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.80 E-value=5.8e-07 Score=75.65 Aligned_cols=178 Identities=13% Similarity=0.038 Sum_probs=113.8
Q ss_pred EecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcc-eEEEcCCCCEEEEEec---------------------
Q 024185 53 LSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRP-TVAFDQQGLVFAVAME--------------------- 110 (271)
Q Consensus 53 ~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~--------------------- 110 (271)
++|+|+.+. ...-..+.+.+.|.++.+...++...+.+ .++++|+|+++++.+.
T Consensus 200 lpnDGk~l~----~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLD----DPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEee----cccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 456776532 24455677888888887777766655433 3788888887777641
Q ss_pred -------------------CCeEEEEeCCC----CCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEECC
Q 024185 111 -------------------AGAIKLFDSRS----YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDAY 166 (271)
Q Consensus 111 -------------------d~~i~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~~ 166 (271)
++.|.+.|..+ +.. . ...+ .-......+.++|||+++++++. +.++.+.|+.
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~--v-~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSA--L-TRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcc--e-EEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 23466666665 111 1 1111 12355778999999999988776 8999999998
Q ss_pred CCeE------------EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC----------ceeEEEecCCcce
Q 024185 167 GGEK------------RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT----------RNEVACWNGNIGV 224 (271)
Q Consensus 167 ~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~ 224 (271)
+.+. ......... ....+|+++|+...+-..|..|..|++.. ...+..+.-|-.+
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCC---cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 7542 333333222 34578999998777888899999999876 3345545433322
Q ss_pred -----eEEEEEecCCcEEEEeC
Q 024185 225 -----VACLKWAPRRAMFVAAS 241 (271)
Q Consensus 225 -----v~~~~~s~~~~~l~~~~ 241 (271)
..+=.-.|||++|++..
T Consensus 429 gh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 429 GHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ceeeecCCCcCCCCCCEEEEcc
Confidence 11222367788887764
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.79 E-value=2.4e-06 Score=70.41 Aligned_cols=112 Identities=16% Similarity=0.204 Sum_probs=79.6
Q ss_pred eEEEcCC-CCEEEEE----ecCCe----EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEEC
Q 024185 95 TVAFDQQ-GLVFAVA----MEAGA----IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 95 ~~~~~~~-~~~l~~~----~~d~~----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~ 165 (271)
.+.|+.. ...+.+. +.+|. -.+|+....+........+ ..+..+.+.+++|+.+.++.|+.||.|.+||.
T Consensus 210 ~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 210 DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 3667653 3344443 33443 3567776665433333333 35678999999999999999999999999998
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
..+..... +. . ...+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 289 ~~~~t~~~-ka-~--~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 289 TRGVTLLA-KA-E--FIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCCeeeee-ee-c--ccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 76643322 22 1 2366799999999999999999999999864
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.75 E-value=1.7e-06 Score=71.33 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=59.9
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
.+.+++++|+...++.|..||.|.+||...+.. ... ...-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCee----eee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 467799999999999999999999999876543 211 234567889999999999999999999999986443
No 312
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=2.1e-06 Score=70.88 Aligned_cols=225 Identities=10% Similarity=-0.030 Sum_probs=131.5
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR 91 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 91 (271)
+.++++..++.+..++..+|...-. +............. ++. ++.+..++.+.-+|.++|+.+..+...
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~----~~~~~~~~ssP~v~-~~~------v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQ----TKVAGEALSRPVVS-DGL------VLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCccc----ccCCCceecCCEEE-CCE------EEEECCCCEEEEEEccCCCEeeeecCC
Confidence 4566666778888888877732211 22221111111122 333 345677899999999999988777543
Q ss_pred Cc-------ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCcc-----ceEEEEEcC--CCcEEEEEecC
Q 024185 92 GR-------PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA-----EVCDIKFSN--DGKSMLLTTTN 157 (271)
Q Consensus 92 ~~-------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~--~~~~l~~~~~d 157 (271)
.. ..... .+..++.++.+|.+..+|..+++... ........+ ....+.-+| .+..++.++.+
T Consensus 190 ~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W--~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~ 265 (394)
T PRK11138 190 VPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIW--QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN 265 (394)
T ss_pred CCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhh--eeccccCCCccchhcccccCCCcEEECCEEEEEEcC
Confidence 11 11111 13357777789999999999887511 111111000 011112233 24567777889
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc-ceeEEEEEecCCcE
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAM 236 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~ 236 (271)
|.+..+|..+|+.+.+..... ...+. .++..++.++.+|.+..+|..+++.+.....-. ....+.... ++.+
T Consensus 266 g~l~ald~~tG~~~W~~~~~~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l 338 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGS----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYL 338 (394)
T ss_pred CeEEEEECCCCCEEEeecCCC----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEE
Confidence 999999999998776543221 11122 245678888889999999999998766543211 112222222 4444
Q ss_pred EEEeC-CeEEEEcCCCCCCCcCC
Q 024185 237 FVAAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 237 l~~~~-~~v~iw~~~~~~~~~~~ 258 (271)
++... |.+...|..+++.+...
T Consensus 339 ~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 339 VVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEEeCCCEEEEEECCCCCEEEEE
Confidence 43333 88999999998876543
No 313
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.73 E-value=1.1e-06 Score=72.26 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=98.3
Q ss_pred cceEEEcCCCCEEEEE---ecC-CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCe--EEEEEC
Q 024185 93 RPTVAFDQQGLVFAVA---MEA-GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNN--IYVLDA 165 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~---~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--i~~~d~ 165 (271)
...-+|+|+++.++.. ... ..++++|+++++. ..... ..+.-...+|+|||++|+.... ||. |+++|+
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--~~i~~---~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR--PVILN---FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCcc--ceeec---cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 3447899999876655 222 3699999998875 22222 2344556789999999887654 554 777788
Q ss_pred CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CC--cEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DG--TLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
..++..+ +...... -....|+|||++++..+. .| .|.+++...+.. ..+....+.-....|+|||++++..+
T Consensus 270 ~~~~~~~-Lt~~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 270 DGKNLPR-LTNGFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCCccee-cccCCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEec
Confidence 7776433 4333322 346899999999987765 44 466667665554 33322222223788999999988876
Q ss_pred --Ce--EEEEcCCCCC
Q 024185 242 --SV--LSFWIPNPSS 253 (271)
Q Consensus 242 --~~--v~iw~~~~~~ 253 (271)
|. |.+.|+.++.
T Consensus 346 ~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 346 SGGQWDIDKNDLASGG 361 (425)
T ss_pred cCCceeeEEeccCCCC
Confidence 43 6666665544
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.7e-06 Score=72.88 Aligned_cols=198 Identities=13% Similarity=0.083 Sum_probs=127.7
Q ss_pred EEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcc---eEEEcCCCCEEEEEecCC-----eEEEEeCCCCC
Q 024185 52 FLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRP---TVAFDQQGLVFAVAMEAG-----AIKLFDSRSYD 123 (271)
Q Consensus 52 ~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~ 123 (271)
++++.+.. ++.|+.+|.|.+.+- .-+.++.++.+... .+-...+.++|++.+.|+ .+++|+++..+
T Consensus 30 c~~s~~~~-----vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGS-----VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCce-----EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 45666666 778999999877654 22333555554322 233333445777766554 58999987542
Q ss_pred C-C-cceE--EEecC-----CccceEEEEEcCCCcEEEEEecCCeEEEEECC--CCeEEEEeecCCCCCceeeEEECCCC
Q 024185 124 K-G-PFDT--FLVGG-----DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 124 ~-~-~~~~--~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
. . |... ..+.. ...++.+++.+.+-+.++.|-.+|.|..+.-. ..+-.+....+.+..+|+.+.+..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 2 1 2211 12222 35678999999999999999999999998531 11112222334455679999999888
Q ss_pred CEEEEecCCCcEEEEEcCCcee-EEEecCCcceeEEEEEecCCc-EEEEeCCeEEEEcCCCCCCC
Q 024185 193 QYVVSGSGDGTLHAWNINTRNE-VACWNGNIGVVACLKWAPRRA-MFVAASSVLSFWIPNPSSNS 255 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~v~iw~~~~~~~~ 255 (271)
+.++....-..|.+|.+....+ ...+..|+.+..|-++++... ++++++.-+.+|+.+...+.
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPC 248 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCccee
Confidence 8733333345799999974442 455788888999999998766 44444588999998765443
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=4.4e-06 Score=70.96 Aligned_cols=224 Identities=10% Similarity=0.077 Sum_probs=151.9
Q ss_pred ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchh-------hhhhhhhhccCceEEEEEecCcceeEEEecCC
Q 024185 20 NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLM-------IALCLVLLTTALEYGIFVLMLASFQGILRLRG 92 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 92 (271)
...+..++...- +.++.++.|...|..+.|.|-.... ....++++...|.|.+||...+..+..++.+.
T Consensus 34 hslV~VVDs~s~----q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~ 109 (1062)
T KOG1912|consen 34 HSLVSVVDSRSL----QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN 109 (1062)
T ss_pred CceEEEEehhhh----hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC
Confidence 555666665554 6677789999999999998743211 11127788889999999999988887777665
Q ss_pred cc--eEEEcC---CC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEecCCeEEEEEC
Q 024185 93 RP--TVAFDQ---QG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 93 ~~--~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~~d~ 165 (271)
.+ .++|-+ +. ..|++-.....+.+|+..++++ .+..........|+.+.| |.+.+...+..|.+.+-+.
T Consensus 110 ~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 110 DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred cchhheeeeeccCcchheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 33 366654 44 3555556678999999999987 555544556778899999 7777777777777777664
Q ss_pred CC-------CeEEEEeecCCC-----------------C------CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 166 YG-------GEKRCGFSLEPS-----------------P------NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 166 ~~-------~~~~~~~~~~~~-----------------~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
-. ++..+.-..|.. + .....++|+|.-+-++.......+.++|++-..++
T Consensus 186 l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l 265 (1062)
T KOG1912|consen 186 LGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL 265 (1062)
T ss_pred cCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhcee
Confidence 21 222222222111 0 01223567887666666666778999999988888
Q ss_pred EEecCCcceeEEEEEecCCc--EEEEeC--CeEEEEcCCC
Q 024185 216 ACWNGNIGVVACLKWAPRRA--MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 216 ~~~~~~~~~v~~~~~s~~~~--~l~~~~--~~v~iw~~~~ 251 (271)
....-..+.+.-+.|-|+++ .|.+.- |.+.+|-.+.
T Consensus 266 ~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 266 AVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 87766666667788888764 566664 8899997544
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.71 E-value=6.7e-06 Score=73.05 Aligned_cols=189 Identities=12% Similarity=0.152 Sum_probs=119.8
Q ss_pred eecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEe----cC--
Q 024185 8 LPITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVL----ML-- 81 (271)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~----~~-- 81 (271)
+..+..++++.+.|.++..+..... ++....-.+.|.+++||||++. ++-.+.++++.+-.. -.
T Consensus 77 l~d~~~i~v~~~~G~iilvd~et~~-----~eivg~vd~GI~aaswS~Dee~-----l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 77 LADTNSICVITALGDIILVDPETLE-----LEIVGNVDNGISAASWSPDEEL-----LALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred ecccceEEEEecCCcEEEEcccccc-----eeeeeeccCceEEEeecCCCcE-----EEEEeCCcEEEEEeccccchhcc
Confidence 3445678888888998888655442 2224455678899999999998 556666666665432 00
Q ss_pred -----------------cceeEEEecC-----------------------CcceEEEcCCCCEEEEEe----cC-CeEEE
Q 024185 82 -----------------ASFQGILRLR-----------------------GRPTVAFDQQGLVFAVAM----EA-GAIKL 116 (271)
Q Consensus 82 -----------------~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~----~d-~~i~i 116 (271)
|+....|++. ..+.+.|--||+++|+.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1111122211 123489999999999842 23 78999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe---cCCeEEEEECCCCeEEEEee--cCCCCCceeeEEECCC
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAYGGEKRCGFS--LEPSPNTNTEATFTPD 191 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~--~~~~~~~v~~~~~~~~ 191 (271)
||.+ +.+ ...-....+.-.+++|-|.|.++++-. .|+.|.+|. ++|-.-..|. ...+...+..++|+.+
T Consensus 227 ~drE-g~L----ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 227 YDRE-GAL----NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eccc-chh----hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 9988 443 111112234456899999999988764 366799998 4453333222 1222223888999999
Q ss_pred CCEEEE---ecCCCcEEEEEcCCc
Q 024185 192 GQYVVS---GSGDGTLHAWNINTR 212 (271)
Q Consensus 192 ~~~l~~---~~~dg~i~iwd~~~~ 212 (271)
+..|+. ......|++|-+.+-
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999987 344445999988763
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=9.8e-07 Score=69.18 Aligned_cols=213 Identities=12% Similarity=0.091 Sum_probs=123.9
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCC-CEEEEEecCCeEEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQG-LVFAVAMEAGAIKL 116 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i~i 116 (271)
+.+..+...|..++|||....+ +..++.+.+|+|.|+++...+..+..+ .+++++|.-|+ ++|+.|..+|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GL----l~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGL----LGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccce----eeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEE
Confidence 3567788889999999998854 458899999999999999888888766 46789998876 57788888999999
Q ss_pred EeCCCCCCCcceEEEecCCccceEEEEEc------CCCcEEEEEecCCeEEEEECC--CCeEEEEeecCCCCCceeeEEE
Q 024185 117 FDSRSYDKGPFDTFLVGGDTAEVCDIKFS------NDGKSMLLTTTNNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
||++..+. ++..+.-.-...+|..++.- +.|.+++..+.+ +..|+.. .+.....+... .++.+.++++
T Consensus 263 yD~R~~~~-~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy 338 (463)
T KOG1645|consen 263 YDMRQPEG-PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQY 338 (463)
T ss_pred EEccCCCc-hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeee
Confidence 99987663 22222211122445544432 234444444433 4455542 12222222211 1234666677
Q ss_pred CCCCCEEEEecCCC-------cEE-EEEcCCceeEEEe-cCC-cce------eEEEEEecCCcEEEEeC---CeEEEEcC
Q 024185 189 TPDGQYVVSGSGDG-------TLH-AWNINTRNEVACW-NGN-IGV------VACLKWAPRRAMFVAAS---SVLSFWIP 249 (271)
Q Consensus 189 ~~~~~~l~~~~~dg-------~i~-iwd~~~~~~~~~~-~~~-~~~------v~~~~~s~~~~~l~~~~---~~v~iw~~ 249 (271)
++..+.++.....+ .+- --|-.+|.++... +++ .+. -..+.=.++.++++..+ +.+.+||+
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 76555555433220 011 1122233333221 112 110 01122244556666554 77999999
Q ss_pred CCCCCCcCCC
Q 024185 250 NPSSNSTDES 259 (271)
Q Consensus 250 ~~~~~~~~~~ 259 (271)
.+++......
T Consensus 419 ~s~evvQ~l~ 428 (463)
T KOG1645|consen 419 HSFEVVQTLA 428 (463)
T ss_pred chhheeeecc
Confidence 9988766554
No 318
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.68 E-value=1.2e-05 Score=61.07 Aligned_cols=203 Identities=8% Similarity=0.088 Sum_probs=115.9
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEEecCCeEE
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIK 115 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~ 115 (271)
+.+.+-...++.+.+.|+.+.+ ++.....+.|...+. +|+.++.++..+ ...+++..++.++++.-.++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tL----faV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTL----FAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEE----EEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCeE----EEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence 3466667779999999986654 557788888888886 578888776543 45589988887777666689999
Q ss_pred EEeCCCCCCCc----ceEEEec---CCccceEEEEEcCCCcEEEEEecCCeEEEEECCC---CeEEEEe-----e-cCCC
Q 024185 116 LFDSRSYDKGP----FDTFLVG---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG---GEKRCGF-----S-LEPS 179 (271)
Q Consensus 116 i~d~~~~~~~~----~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~-----~-~~~~ 179 (271)
++++....... .....+. .+...+-.++|+|.++.|+++-......+|.++. ...+... . ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99884432110 1112222 2445689999999888888777766666666543 2111111 1 0111
Q ss_pred CCceeeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEecCCc---------ceeEEEEEecCCcEEEEeC-CeEEEE
Q 024185 180 PNTNTEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAAS-SVLSFW 247 (271)
Q Consensus 180 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~-~~v~iw 247 (271)
...+.+++++|. +++++....+..|..+| .+|+.+..+.-.. .....++|.++|++.+++- +..++|
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 134677899987 45666777788999999 5777766552211 2357899999998877776 655544
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=8.1e-07 Score=76.45 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=106.9
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC---------CeEEEEeCCCCCCCcceEEEecCC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA---------GAIKLFDSRSYDKGPFDTFLVGGD 135 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~ 135 (271)
+.+|...|+|.+-|.++.+.++++..|.....+|+-.|+.|++++.. .-|++||++..+. ...+.-+
T Consensus 190 lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~ 265 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFP 265 (1118)
T ss_pred EEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccc
Confidence 67899999999999999999999999999899999999999998754 4578999988664 2222222
Q ss_pred ccceEEEEEcCC-CcEEEEEecCCeEEEEEC---CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 136 TAEVCDIKFSND-GKSMLLTTTNNNIYVLDA---YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 136 ~~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
.+ -.-+.|.|. ...+++++..|...+-|. .+.. ...+..+.....+..++++++++.++.|..+|.|.+|-
T Consensus 266 ~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 266 YG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cC-chhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22 255678884 456888899999999983 3321 23333344444589999999999999999999999997
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.6e-07 Score=73.32 Aligned_cols=207 Identities=13% Similarity=0.155 Sum_probs=137.2
Q ss_pred ccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecC--c-ceeEEEecCC--cceEEEcCCCCEEEEEec-CCeEEEE
Q 024185 44 SKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLML--A-SFQGILRLRG--RPTVAFDQQGLVFAVAME-AGAIKLF 117 (271)
Q Consensus 44 ~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-d~~i~i~ 117 (271)
|...+..+..+. .++ +.+++.||.++.|-... + +.+..+..|- +..++.+-++..+.+.+. |..++++
T Consensus 8 hrd~i~hv~~tk-a~f-----iiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKF-----IIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeeeh-hhe-----EEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 445555544443 334 66999999999997643 1 2233344443 344788889999999777 9999999
Q ss_pred eCCCCCCCcceEEEecCCccceEEEEEcCCC-c-EEEEE-ecCCeEEEEECCCCeE--EEEeecCCCCCceeeEEECCCC
Q 024185 118 DSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG-K-SMLLT-TTNNNIYVLDAYGGEK--RCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 118 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~-~l~~~-~~d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
|+++... .....+..-++.+ +...+|.. . .++++ -.++.+.++|-....+ ...-..|..+ |..+.+.|-+
T Consensus 82 DvEn~Dm--inmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP--V~~i~y~qa~ 156 (558)
T KOG0882|consen 82 DVENFDM--INMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP--VKKIRYNQAG 156 (558)
T ss_pred Eeeccch--hhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc--eEEEEeeccc
Confidence 9988665 2223332222323 23334421 1 33333 3478999999765432 2333445554 8899999999
Q ss_pred CEEEEecCCCcEEEEEcCC------ceeE---------EEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 193 QYVVSGSGDGTLHAWNINT------RNEV---------ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd~~~------~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
..+++....|.|.-|.... .+.. ..+........++.|+|+|..+.+-+ ..|++++..++++.
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 9999999999999998762 1111 12223445678999999999998887 77999999999988
Q ss_pred cCCCCC
Q 024185 256 TDESTD 261 (271)
Q Consensus 256 ~~~~~~ 261 (271)
.+.+..
T Consensus 237 qeiDE~ 242 (558)
T KOG0882|consen 237 QEIDEV 242 (558)
T ss_pred hhhhcc
Confidence 776543
No 321
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.64 E-value=2.6e-05 Score=64.38 Aligned_cols=215 Identities=17% Similarity=0.084 Sum_probs=124.4
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccceE-----EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKGIR-----RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG 86 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 86 (271)
+.++++..++.+..++..+|...-. +....... ...... ++. ++.++.+|.+...|.++|+.+.
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~----~~~~~~~~~~~~~~sP~v~-~~~------v~~~~~~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWT----VNLDVPSLTLRGESAPATA-FGG------AIVGGDNGRVSAVLMEQGQLIW 229 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeee----ecCCCCcccccCCCCCEEE-CCE------EEEEcCCCEEEEEEccCChhhh
Confidence 4556666678888888877732211 21111000 011111 222 3356778889999999988765
Q ss_pred EEecCCc---c------eEEEcC--CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe
Q 024185 87 ILRLRGR---P------TVAFDQ--QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 87 ~~~~~~~---~------~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
..+.... . .+.-+| .+..++.++.+|.+..+|..+++. .....- .....+. .++..++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~----~W~~~~--~~~~~~~--~~~~~vy~~~ 301 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI----VWKREY--GSVNDFA--VDGGRIYLVD 301 (394)
T ss_pred eeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE----EEeecC--CCccCcE--EECCEEEEEc
Confidence 5432110 0 011122 345677777899999999999875 333211 1111222 2456788888
Q ss_pred cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEE-EEEecCC
Q 024185 156 TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVAC-LKWAPRR 234 (271)
Q Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~ 234 (271)
.+|.+..+|..+++.+......... ...+... .+.+++.++.+|.+...|..+|+.+...+-....+.+ ..+ .++
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~ 377 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDLLHR-LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD 377 (394)
T ss_pred CCCeEEEEECCCCcEEEcccccCCC-cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC
Confidence 9999999999999876654321111 1122222 2457888899999999999999998877543332322 222 255
Q ss_pred cEEEEeC-CeEEEEcC
Q 024185 235 AMFVAAS-SVLSFWIP 249 (271)
Q Consensus 235 ~~l~~~~-~~v~iw~~ 249 (271)
++++... |.+..++.
T Consensus 378 ~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 378 KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCceEEEEeC
Confidence 5444443 77877654
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.9e-06 Score=73.17 Aligned_cols=147 Identities=15% Similarity=0.239 Sum_probs=108.0
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
+.|++++ +++|+.|+.+|.|++++....-. ..+ .|... .-+|.++++++.||++.+-.+-+.+...
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~---~~~---~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPK---TNF---DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccc---ccc---ccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3445553 67899999999999999875421 111 23322 6689999999999999999999888877
Q ss_pred EeecCCCCCceeeEEECCC-----CCEEEEecCCCcEEEEEcCC-c-eeEEEecCCcceeEEEEEecCCcEEEEeC-CeE
Q 024185 173 GFSLEPSPNTNTEATFTPD-----GQYVVSGSGDGTLHAWNINT-R-NEVACWNGNIGVVACLKWAPRRAMFVAAS-SVL 244 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~-~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v 244 (271)
++..+.. +.+++++|+ .+.+++|+.-| +.++.-+= | +.-..+....++|.++.|. |+++|-++ -.+
T Consensus 108 ~~df~rp---iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv 181 (846)
T KOG2066|consen 108 QYDFKRP---IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV 181 (846)
T ss_pred eEecCCc---ceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc
Confidence 7665543 888999998 56889999988 77765321 1 1112345557899999996 88999998 559
Q ss_pred EEEcCCCCCCCcCCC
Q 024185 245 SFWIPNPSSNSTDES 259 (271)
Q Consensus 245 ~iw~~~~~~~~~~~~ 259 (271)
++||+.+++.+...+
T Consensus 182 ~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIP 196 (846)
T ss_pred EEEeccccceeeccC
Confidence 999999887665544
No 323
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=4.1e-05 Score=62.76 Aligned_cols=198 Identities=15% Similarity=0.151 Sum_probs=138.6
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEec---CCeEEEEeCCCCC
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAME---AGAIKLFDSRSYD 123 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~ 123 (271)
-..++.++.+... ++....+..|.+.|..+.......... ....++++|+++.++++.. ++.+.+.|..+.+
T Consensus 76 p~~i~v~~~~~~v----yv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKV----YVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeE----EEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 3456778887754 346666889999998877777666544 4455999999998888755 6889999988877
Q ss_pred CCcceEEEecCCccceEEEEEcCCCcEEEEEe-cCCeEEEEECCCCeEEE-----EeecCCCCCceeeEEECCCCCEEEE
Q 024185 124 KGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT-TNNNIYVLDAYGGEKRC-----GFSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
. ... ...-..+ ..++++|+|+.++... .++.+.+.|.......+ ....... ...+.++|+|+++..
T Consensus 152 ~--~~~--~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~---P~~i~v~~~g~~~yV 223 (381)
T COG3391 152 V--TAT--IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG---PAGIAVDPDGNRVYV 223 (381)
T ss_pred E--EEE--EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC---CceEEECCCCCEEEE
Confidence 5 222 2222233 8899999999777665 68899999977665543 1222222 344899999997776
Q ss_pred ecCC---CcEEEEEcCCceeEEE-ecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcC
Q 024185 198 GSGD---GTLHAWNINTRNEVAC-WNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTD 257 (271)
Q Consensus 198 ~~~d---g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~ 257 (271)
.... +.+...|..++..... ..........+..+|+|..+.... +.+.+-|..+......
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 5543 5899999988877765 221111456788999999887774 6788888877665543
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.7e-05 Score=66.20 Aligned_cols=202 Identities=11% Similarity=0.123 Sum_probs=123.0
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccce-EEeeEEecCCchhhhhhhhhhccCc-----eEEEEEecCc
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGI-RRGLFLSACLQLMIALCLVLLTTAL-----EYGIFVLMLA 82 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 82 (271)
+.+..++++..+|.+..++..-. ..+.|+.+... +..+....+..+ |++.+.|+ .+++|+++.-
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s~~-----~~~~fqa~~~siv~~L~~~~~~~~-----L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSSFQ-----LIRGFQAYEQSIVQFLYILNKQNF-----LFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred CCCceEEEeeccccEEEecccce-----eeehheecchhhhhHhhcccCceE-----EEEEeecCCCCceEEEEeccccc
Confidence 45567778888888887765332 22335555544 444444444345 44545443 5899998643
Q ss_pred ------cee---EEEe--cC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 83 ------SFQ---GILR--LR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 83 ------~~~---~~~~--~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
+++ +.+. .+ ..++++.+.+-+.+++|-.+|.|..+.-.--+-...+..-......+|+.+.+..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 223 1222 11 24558999999999999999999998542111000112222234578999999999
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-CCcc
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN-GNIG 223 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 223 (271)
++.++....-..|.+|.+....+.. .+..++ ....|..+++....+++++. ..+.+||....++-..+. +|..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G--~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG--ISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCC--ccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence 9874444445579999987444222 233333 44788888876664555554 369999988767666776 6654
No 325
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.56 E-value=4.9e-06 Score=72.62 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=96.1
Q ss_pred hhccCceEEEEEecCcceeEEEecCC-cceEEEcCCC-------CEEEEEecCCeEEEEeCCCCCCCcce-EEEecCCcc
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQG-------LVFAVAMEAGAIKLFDSRSYDKGPFD-TFLVGGDTA 137 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-------~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~ 137 (271)
.......++-.|++.|+.+.....+. ++...+.|+. ..-+.|-.+..+..||++-...+... .........
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 44456788889999999999998875 4467777753 34566777889999999864421111 011112345
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
..+|++-+.+| +||+|+.+|.||+|| +.|+.-. .+.+-.. +|..++.+.||+|+++.+.. .+.+++.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~--pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGD--PIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCC--CeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 67888888777 499999999999999 4444322 2444444 49999999999999877754 5666664
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.55 E-value=8.9e-06 Score=72.31 Aligned_cols=198 Identities=10% Similarity=0.095 Sum_probs=124.9
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeE-EEecCCcceEEEcCCCCEEEEEecCCeEEEEeCC----
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQG-ILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSR---- 120 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~---- 120 (271)
+.+.++.|..+... ++.+..+|.|.+-|.++..... ..-..++.+++|+||++.++..+..+++.+-+-.
T Consensus 69 ~~i~s~~fl~d~~~-----i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-----ICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEecccce-----EEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 46777777777766 5677888889888887765432 2234468889999999999999887777654321
Q ss_pred CCCC---------Ccc------eEEEecCC---------------------ccceEEEEEcCCCcEEEEEe-----cCCe
Q 024185 121 SYDK---------GPF------DTFLVGGD---------------------TAEVCDIKFSNDGKSMLLTT-----TNNN 159 (271)
Q Consensus 121 ~~~~---------~~~------~~~~~~~~---------------------~~~v~~~~~s~~~~~l~~~~-----~d~~ 159 (271)
..+. ++. ....+.|. .+.=+.+.|--||+++++.. ....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0000 000 00011110 01123588999999998843 2378
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC---CCcEEEEEcCCcee----EEEecCCcceeEEEEEec
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG---DGTLHAWNINTRNE----VACWNGNIGVVACLKWAP 232 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~ 232 (271)
+++||.+ |..-..-.... +.-.+++|-|.|..+++-.. |+.|.++.- +|-. ...++.....+..++|+.
T Consensus 224 irV~drE-g~Lns~se~~~--~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVE--GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred EEEeccc-chhhcccCccc--ccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC
Confidence 9999965 44322211111 12345999999999987543 557888874 3332 222333444589999999
Q ss_pred CCcEEEEe---C-Ce-EEEEcCCCC
Q 024185 233 RRAMFVAA---S-SV-LSFWIPNPS 252 (271)
Q Consensus 233 ~~~~l~~~---~-~~-v~iw~~~~~ 252 (271)
++..|+.- . +. |++|-+.+.
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCe
Confidence 99999873 2 44 999987663
No 327
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.54 E-value=7.8e-06 Score=62.34 Aligned_cols=153 Identities=12% Similarity=0.237 Sum_probs=104.5
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-----cceEEEEEcCC-CcEEEEEecCCeEEEEECC
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-----AEVCDIKFSND-GKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~d~~i~~~d~~ 166 (271)
+++++++.|...++++. |-.|.+|+++-... .+....++.|. .-|++..|+|. ...+...+..|.|++-|++
T Consensus 175 iNSiS~NsD~et~lSaD-dLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNSDKETLLSAD-DLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecCchheeeecc-ceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 56689998888877765 67899999875442 24444555554 34788899995 4567777889999999998
Q ss_pred CCeE------EEEeecCC--------CCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCc---------
Q 024185 167 GGEK------RCGFSLEP--------SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNI--------- 222 (271)
Q Consensus 167 ~~~~------~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~--------- 222 (271)
.... +....... ....|..+.|+++|+++++-..- ++++||++. ..++++++-|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhh
Confidence 4321 11111110 01357889999999999887654 899999985 45677664442
Q ss_pred ---cee---EEEEEecCCcEEEEeC--CeEEEEc
Q 024185 223 ---GVV---ACLKWAPRRAMFVAAS--SVLSFWI 248 (271)
Q Consensus 223 ---~~v---~~~~~s~~~~~l~~~~--~~v~iw~ 248 (271)
..| ..+.||.|...+++|+ +..-+|-
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeec
Confidence 122 4578898888888887 5555554
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.7e-06 Score=72.45 Aligned_cols=117 Identities=9% Similarity=0.099 Sum_probs=89.4
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe--cCCcce-EEEcCCCCEEEEEecCCeEEEEeCCC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR--LRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRS 121 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~ 121 (271)
...+.--+++..+++ ++-|+..|.+++|+-..++....-. .+++.+ ..++++..++|+|+..|.|.++.++.
T Consensus 33 ~~~v~lTc~dst~~~-----l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 33 PARVKLTCVDATEEY-----LAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred cceEEEEEeecCCce-----EEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 345555667777787 8889999999999987776543333 334444 78899999999999999999999887
Q ss_pred CCCCcceEEE---ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCC
Q 024185 122 YDKGPFDTFL---VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 122 ~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 167 (271)
... +..... -+.|...|++++|++|+..+++|...|+|.+-.+.+
T Consensus 108 ~~p-~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELP-RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCC-CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 443 222222 223678899999999999999999999999888776
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=8.4e-08 Score=82.22 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=116.9
Q ss_pred EEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCC--eEE
Q 024185 86 GILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNN--NIY 161 (271)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~ 161 (271)
+.++.+ .-+|++|+.+.++|+.|+..|.|++|++.++.. .....+|..+++.+.=+.||..+++.+.-. -..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc----cccccccccccccccccCCcceeeeeccccCchHH
Confidence 344444 356799999999999999999999999999987 667889999999999999999888765532 467
Q ss_pred EEECCC-CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-c---CCcceeEEEEEecCCcE
Q 024185 162 VLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-N---GNIGVVACLKWAPRRAM 236 (271)
Q Consensus 162 ~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~ 236 (271)
+|++.+ +...++|.. -.++.|+....+-+.|+......+||+.++.++.++ . +....=++..|+|+..+
T Consensus 1171 LW~~~s~~~~~Hsf~e------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HhccccccCccccccc------cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 899854 455555543 334788877666666776678999999999887774 2 12223367889999887
Q ss_pred EEEeCCeEEEEcCCCCCCC
Q 024185 237 FVAASSVLSFWIPNPSSNS 255 (271)
Q Consensus 237 l~~~~~~v~iw~~~~~~~~ 255 (271)
++--+ .+||.+...-+
T Consensus 1245 IlndG---vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1245 ILNDG---VLWDVRIPEAI 1260 (1516)
T ss_pred EeeCc---eeeeeccHHHH
Confidence 77443 78888765433
No 330
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=6.3e-06 Score=70.08 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=110.8
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCC------------cEEEEEecCCe
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDG------------KSMLLTTTNNN 159 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~d~~ 159 (271)
+..++.|+|.| +||.|+ ...|.+.|..+.+. ...+.-|...|+.+.|.|.. -.||++...|.
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~----iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQL----IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhh----hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 45568999877 466666 46788999988776 55667788999999998832 14566677899
Q ss_pred EEEEECCCCeEEEEeecCCCCCceeeEEECC---CC-CEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec-CC
Q 024185 160 IYVLDAYGGEKRCGFSLEPSPNTNTEATFTP---DG-QYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RR 234 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~ 234 (271)
|.+||...+..+..+..+..+ +..++|-| ++ ..|+.-.....+.+|+..+|+.............++.+.| |.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 999999988877777766665 77788854 34 4666667778999999999999988876666677888888 44
Q ss_pred cEE-EEeC-CeEEEEcC
Q 024185 235 AMF-VAAS-SVLSFWIP 249 (271)
Q Consensus 235 ~~l-~~~~-~~v~iw~~ 249 (271)
+.+ +.++ |-+.+-+.
T Consensus 169 rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 169 RHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred ceEEEEccCceEEEEec
Confidence 444 4444 55555443
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=9.6e-05 Score=58.07 Aligned_cols=185 Identities=13% Similarity=0.123 Sum_probs=107.4
Q ss_pred ceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE--EecCCccc-eEEEEEcCCC
Q 024185 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--LVGGDTAE-VCDIKFSNDG 148 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~-v~~~~~s~~~ 148 (271)
..|.+-|+..++.+..+...+...+--+++ +.+.+-+.||.+.-..+...... .... .+.....+ +..-++...+
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~-~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKE-AQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSE-EEEEEEESSTTTS-B-S--EEETTT
T ss_pred CeEEEEECCCCceeeeecCCCEEEEEecCC-CceEEEecCCceEEEEECCCCCE-eEeeccccCCCCcccccccceECCC
Confidence 345555556666666666665333222222 34667777999888888743321 1111 11111222 2344556666
Q ss_pred cEEEEEecCCeEEEEECCCCeEE--EEeecCC--------CCCceeeEEECCCCCEEEEecC---CC-------cEEEEE
Q 024185 149 KSMLLTTTNNNIYVLDAYGGEKR--CGFSLEP--------SPNTNTEATFTPDGQYVVSGSG---DG-------TLHAWN 208 (271)
Q Consensus 149 ~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~iwd 208 (271)
..++..+.+|.|+-.|+...... ..+.... .++.-.-+++++..+.|+.--. ++ .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 66777888999999998765432 2222110 1122333788877666654321 11 588999
Q ss_pred cCCceeEEEecCCcceeEEEEEecCCc-EEEEeC---CeEEEEcCCCCCCCcCCC
Q 024185 209 INTRNEVACWNGNIGVVACLKWAPRRA-MFVAAS---SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~~~~~~~~~ 259 (271)
+.+++.+.+++. ..++.+++.+.+.+ +|++.+ +.+.+||..+++.....+
T Consensus 276 ~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 276 LKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 999999999873 34678999999766 665432 789999999998876554
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=8.5e-08 Score=79.26 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=124.9
Q ss_pred ceEEeeEEecCCc-hhhhhhhhhhccCceEEEEEecCccee--EEEecCCc--ceEEEcC-CCCEEEEEe----cCCeEE
Q 024185 46 GIRRGLFLSACLQ-LMIALCLVLLTTALEYGIFVLMLASFQ--GILRLRGR--PTVAFDQ-QGLVFAVAM----EAGAIK 115 (271)
Q Consensus 46 ~~v~~~~~s~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~--~~~~~~~-~~~~l~~~~----~d~~i~ 115 (271)
..+.|++..-+.+ .+ ++.|..+|.|.+-..+...-- ...+++.. ++++|++ |.+.||+|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cI----lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCI----LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhh----hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 3456666554443 22 678899999999877654322 12233333 4489987 567788873 356899
Q ss_pred EEeCCCCCCCcceEEEecC-CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECC-CC
Q 024185 116 LFDSRSYDKGPFDTFLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTP-DG 192 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~ 192 (271)
|||+.+.-..|.....+.+ ......+++|-.+.+++++|.....++++|++... ....+. .. .+..+..+| .+
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk--~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TK--YVQGITVDPFSP 208 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hh--hcccceecCCCC
Confidence 9999876333333333333 33456688899899999999989899999998332 112222 11 255577788 67
Q ss_pred CEEEEecCCCcEEEEE-cCCce-eEEEecCCc----ceeEEEEEecCCc-EEEEeC---CeEEEEcCCC
Q 024185 193 QYVVSGSGDGTLHAWN-INTRN-EVACWNGNI----GVVACLKWAPRRA-MFVAAS---SVLSFWIPNP 251 (271)
Q Consensus 193 ~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~~----~~v~~~~~s~~~~-~l~~~~---~~v~iw~~~~ 251 (271)
+|+++-. ||.|.+|| .++-+ ++..+.... ..+..++|.|... ++++.. ++|+++|+..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7776655 89999999 43322 222222111 2488999999654 455554 7899999854
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.42 E-value=0.00042 Score=58.89 Aligned_cols=230 Identities=14% Similarity=0.137 Sum_probs=131.2
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccc------eEEeeEEecCCchhhhhh---hhhhccCceEEEEEecCc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKG------IRRGLFLSACLQLMIALC---LVLLTTALEYGIFVLMLA 82 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~~~~~~---l~s~~~dg~i~iwd~~~~ 82 (271)
+.++++..++.+..++..++...-. +..... ......+.. +..++... +..++.+|.+..+|.++|
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~----~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWK----FGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeee----ecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCC
Confidence 5667777788889998887732211 222111 011111211 22110000 001135788999999999
Q ss_pred ceeEEEecCC----------------------c-ceEEEcCCCCEEEEEecCC------------------eEEEEeCCC
Q 024185 83 SFQGILRLRG----------------------R-PTVAFDQQGLVFAVAMEAG------------------AIKLFDSRS 121 (271)
Q Consensus 83 ~~~~~~~~~~----------------------~-~~~~~~~~~~~l~~~~~d~------------------~i~i~d~~~ 121 (271)
+.+..++... + ...++.+.+..++.++.++ .+..+|.++
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 9887765421 0 1244555567788887665 799999999
Q ss_pred CCCCcceEEEec--CCcc----ceEEEEEc----CCCc---EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE
Q 024185 122 YDKGPFDTFLVG--GDTA----EVCDIKFS----NDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF 188 (271)
Q Consensus 122 ~~~~~~~~~~~~--~~~~----~v~~~~~s----~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 188 (271)
++. ..... .|.. ......+. -++. .++.++.+|.+...|.++|+.+......... +..
T Consensus 266 G~~----~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~-----~~~ 336 (488)
T cd00216 266 GKV----KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP-----MAY 336 (488)
T ss_pred CCE----EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc-----ccc
Confidence 986 44322 1210 00001111 1333 5778888999999999999988776532111 333
Q ss_pred CCCCCEEEEe------------------cCCCcEEEEEcCCceeEEEecCCc--------cee--EEEEEecCCcEEEEe
Q 024185 189 TPDGQYVVSG------------------SGDGTLHAWNINTRNEVACWNGNI--------GVV--ACLKWAPRRAMFVAA 240 (271)
Q Consensus 189 ~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~v--~~~~~s~~~~~l~~~ 240 (271)
+| ..++.+ ..+|.+.-.|+.+|+.+-+..... .+. ..+. -.+..++.+
T Consensus 337 ~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g 412 (488)
T cd00216 337 DP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAG 412 (488)
T ss_pred CC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEE
Confidence 44 223322 236789999999999887765321 111 1122 234566666
Q ss_pred C--CeEEEEcCCCCCCCcCCC
Q 024185 241 S--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 241 ~--~~v~iw~~~~~~~~~~~~ 259 (271)
+ |.++.+|.++++.+-..+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCCeEEEEECCCCceeeEEE
Confidence 5 889999999998765443
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.42 E-value=1.7e-05 Score=65.65 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=83.1
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
...+.++|+|+++++++ +|.-.+|.....+ ... .+....+.|.+.++ +|+-....+|.++.--+.+...
T Consensus 35 p~~ls~npngr~v~V~g-~geY~iyt~~~~r-----~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG-DGEYEIYTALAWR-----NKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SEEEE-TTSSEEEEEE-TTEEEEEETTTTE-----EEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CeeEEECCCCCEEEEEc-CCEEEEEEccCCc-----ccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 35599999999998855 7888888843322 211 25567789999655 6666668889997422222222
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
.+..... +..+-. |..|+..+.+ .|.+||..+++.+.++... +|..+.|+++|.+++..+ ..+.+++.+.
T Consensus 104 ~i~~~~~---~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 104 SIKLPFS---VEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp ----SS----EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred EEcCCcc---cceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 3332211 333322 7777776654 8999999999999999743 389999999999999888 7788877654
Q ss_pred C
Q 024185 252 S 252 (271)
Q Consensus 252 ~ 252 (271)
.
T Consensus 175 ~ 175 (443)
T PF04053_consen 175 E 175 (443)
T ss_dssp H
T ss_pred h
Confidence 4
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.41 E-value=2.4e-06 Score=71.66 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=109.2
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
+..-+++..+++++.|+.-|.+++|+...++. ......+..+.+..+..|++..++|+|+..|.|.++-+....+..
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~---~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM---RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhh---hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 33366777899999999999999999888774 222333345667777889999999999999999999886643221
Q ss_pred E---eecC-CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc----eeEEEecCCcceeEEEEEecCCcEEEEeCCeE
Q 024185 173 G---FSLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR----NEVACWNGNIGVVACLKWAPRRAMFVAASSVL 244 (271)
Q Consensus 173 ~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v 244 (271)
. -..+ .+...|++++|++|+..+++|...|.|..-.+.+. -..+.+..-.+.|-.+... ++.+|++..-.-
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r~ 191 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTRC 191 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhhh
Confidence 1 1111 12456999999999999999999999998888762 1122333345677777765 455555554444
Q ss_pred EEEcCCCCC
Q 024185 245 SFWIPNPSS 253 (271)
Q Consensus 245 ~iw~~~~~~ 253 (271)
.+++++.++
T Consensus 192 ~Lc~tE~et 200 (726)
T KOG3621|consen 192 ILCQTEAET 200 (726)
T ss_pred heeecchhH
Confidence 556655544
No 336
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.39 E-value=6.3e-05 Score=64.74 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=99.9
Q ss_pred ceEEeeEEecCCchhhhhhhhh---hccCc--eEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC---------
Q 024185 46 GIRRGLFLSACLQLMIALCLVL---LTTAL--EYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA--------- 111 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s---~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 111 (271)
..+...+++|+|+.+++ ... ...|. .+.+++. .+.....+.+.......|+|||+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~--v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAA--VVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEE--EEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 45677899999998544 221 11233 4444454 3333333455556669999999877776532
Q ss_pred ---CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE---EECCCCeE-E---EEeecCCCCC
Q 024185 112 ---GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV---LDAYGGEK-R---CGFSLEPSPN 181 (271)
Q Consensus 112 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~---~d~~~~~~-~---~~~~~~~~~~ 181 (271)
+.+.+.++..++. .. ...+.|..+.|||||+.++... +++|.+ -....|+. + +.+.. ....
T Consensus 427 ~~~gql~~~~vd~ge~----~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~ 497 (591)
T PRK13616 427 PATGQLARTPVDASAV----AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-GLGD 497 (591)
T ss_pred CCCceEEEEeccCchh----hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec-ccCC
Confidence 2333334433332 10 2245799999999999998766 577777 44344531 1 11111 1112
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecC--CcceeEEEEEecCCcEEEEeC
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNG--NIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 241 (271)
.+.++.|.+++.++ .+..++.-.+|.+.- |.....+.. ....+..++=+++ .++++.+
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~ 558 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTDA 558 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEcC
Confidence 25779999999855 555444444554431 222222232 2455677776663 3444433
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=3.9e-05 Score=63.55 Aligned_cols=178 Identities=12% Similarity=0.129 Sum_probs=94.9
Q ss_pred cccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecCCeEEEEe-CCC
Q 024185 43 TSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD-SRS 121 (271)
Q Consensus 43 ~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d-~~~ 121 (271)
...-....+.++|+|+.+ +. +.||...++.....+... .+ ......|.++++ +|+-..++.|.++. .+.
T Consensus 30 ~~~~~p~~ls~npngr~v-----~V-~g~geY~iyt~~~~r~k~--~G-~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFV-----LV-CGDGEYEIYTALAWRNKA--FG-SGLSFVWSSRNR-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEE-----EE-EETTEEEEEETTTTEEEE--EE-E-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEE-----EE-EcCCEEEEEEccCCcccc--cC-ceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence 334445679999999973 33 778888888743333221 22 234478888555 67776688999963 332
Q ss_pred CCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC
Q 024185 122 YDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
.. .....+. ..+..+-. |..|+..+.+ .|.+||..+++.++++.... |..+.|+++|++++..+.+
T Consensus 100 ~~---~k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~----vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 100 EV---VKSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA----VKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp -T---T-----S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-----EEEEE-TTSSEEEEE-S-
T ss_pred cc---ceEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC----CcEEEEECCCCEEEEEeCC
Confidence 22 1122222 12333322 8877777655 89999999999999887442 7889999999999988866
Q ss_pred CcEEEEEcCCc-----------eeEEEecCCcceeEEEEEecCCcEEEEeCCeEEE
Q 024185 202 GTLHAWNINTR-----------NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSF 246 (271)
Q Consensus 202 g~i~iwd~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~i 246 (271)
.+.+++.... .....+..-...|.+..|..| -++.+..+.++.
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lkY 219 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLKY 219 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEEE
T ss_pred -eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEEE
Confidence 6777765433 023333222456788888766 444444444444
No 338
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=0.00055 Score=54.05 Aligned_cols=205 Identities=16% Similarity=0.148 Sum_probs=116.8
Q ss_pred ecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEec-------
Q 024185 18 RQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRL------- 90 (271)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------- 90 (271)
..++.++.++...+. .+.+...............+.. .++ +..+.+++.+++..+..+..
T Consensus 44 I~~~~i~r~~~~~g~-----~~~~~~p~~~~~~~~~d~~g~L-------v~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~ 110 (307)
T COG3386 44 ILGGRIHRLDPETGK-----KRVFPSPGGFSSGALIDAGGRL-------IAC-EHGVRLLDPDTGGKITLLAEPEDGLPL 110 (307)
T ss_pred CCCCeEEEecCCcCc-----eEEEECCCCcccceeecCCCeE-------EEE-ccccEEEeccCCceeEEeccccCCCCc
Confidence 345666666665441 1223333333333444444443 222 23356677766655333311
Q ss_pred CCcceEEEcCCCCEEEEEec-----------CCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CC
Q 024185 91 RGRPTVAFDQQGLVFAVAME-----------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NN 158 (271)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~ 158 (271)
...+-....|+|.+.+.... -|.++.+|. .+.. ...+..+-..-+.++||||++.|+.+.. .+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~----~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV----VRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE----EEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 12344788899886555433 134555554 2332 3333444455678999999988887755 57
Q ss_pred eEEEEECCC--Ce---EEEEeecCCCCCceeeEEECCCCCEEEEecCCC-cEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 159 NIYVLDAYG--GE---KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-TLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 159 ~i~~~d~~~--~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
.|+-|++.. +. ....+.....++..-.++...+|++.+++..+| .|.+|+.. ++.+..+.-+...+++++|--
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 888887752 11 111111111223344578888998876555554 89999987 999988877767788888854
Q ss_pred -CCcEEEEeC
Q 024185 233 -RRAMFVAAS 241 (271)
Q Consensus 233 -~~~~l~~~~ 241 (271)
+.+.|...+
T Consensus 265 ~~~~~L~iTs 274 (307)
T COG3386 265 PDLNTLYITS 274 (307)
T ss_pred CCcCEEEEEe
Confidence 445444443
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.36 E-value=0.00011 Score=62.41 Aligned_cols=184 Identities=13% Similarity=0.026 Sum_probs=114.2
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC---------------c-----------------ceEEEc---CCCCEEEEEe
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG---------------R-----------------PTVAFD---QQGLVFAVAM 109 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~-----------------~~~~~~---~~~~~l~~~~ 109 (271)
|.||+..|.++++-+.+++.+..+..-. + +.+++. -||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 7899999999999998887666542110 0 011221 1567777664
Q ss_pred c-CCeEEEEeCCCCCCCcceEEEecC-------------CccceE-----EEEEcCCCcEEEEEec-CCeEEEEECCCCe
Q 024185 110 E-AGAIKLFDSRSYDKGPFDTFLVGG-------------DTAEVC-----DIKFSNDGKSMLLTTT-NNNIYVLDAYGGE 169 (271)
Q Consensus 110 ~-d~~i~i~d~~~~~~~~~~~~~~~~-------------~~~~v~-----~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~ 169 (271)
. +..|...++...+.. ++..+.. ++..|. .+=++|||+.+...+. .+.+.+.|..+.+
T Consensus 149 k~n~Rvari~l~~~~~~--~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 149 KANTRVARIRLDVMKCD--KITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred CCCcceEEEECccEeec--eeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 3 456666666554431 1111111 112222 1234567765543332 5678888888887
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecC----------------------------------------CCcEEEEEc
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSG----------------------------------------DGTLHAWNI 209 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------------------------------dg~i~iwd~ 209 (271)
...++..... ...++++|+|+++++.+. ++.|.+.|.
T Consensus 227 V~~qV~Vdgn---pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~ 303 (635)
T PRK02888 227 VAWQVMVDGN---LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG 303 (635)
T ss_pred EEEEEEeCCC---cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence 7777665544 344788899988877751 234777777
Q ss_pred CC-----ceeEEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCC
Q 024185 210 NT-----RNEVACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSN 254 (271)
Q Consensus 210 ~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~ 254 (271)
++ .+.+..+... .....+.++|||+++++++ .++.|.|+++.+.
T Consensus 304 ~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 304 RKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred CccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 76 3445555433 3457899999999999887 7899999988664
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=74.89 Aligned_cols=107 Identities=10% Similarity=0.185 Sum_probs=87.4
Q ss_pred EEEEEcCCCcEEEEEec----CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 140 CDIKFSNDGKSMLLTTT----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
+-..|+|...++++++. .|.|.||- .+|++.+..... ..+++++|+|..-.|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---eehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 44579999999988764 68899984 677755444322 23677999999888888988999999998777666
Q ss_pred EEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCC
Q 024185 216 ACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPN 250 (271)
Q Consensus 216 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~ 250 (271)
.....|..+|..+.|||+|..++++. |.+.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66678999999999999999999998 999999886
No 341
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=0.00011 Score=55.74 Aligned_cols=204 Identities=12% Similarity=0.106 Sum_probs=128.6
Q ss_pred EeeEEecCCchhhhhhhhhhccC-ceEEEEEecCcceeEEEecCCcce----EEEcCCCCEEEEEecC-----CeEEEEe
Q 024185 49 RGLFLSACLQLMIALCLVLLTTA-LEYGIFVLMLASFQGILRLRGRPT----VAFDQQGLVFAVAMEA-----GAIKLFD 118 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~d-----~~i~i~d 118 (271)
..+.++|....-++ -+-.- -...++|..+.+...++...+... =.|||||.+|++.-.| |.|-+||
T Consensus 71 Hgi~~~p~~~rava----fARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 71 HGIAFHPALPRAVA----FARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred CCeecCCCCcceEE----EEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 34667776655322 22222 345688998888777765443221 5789999999887433 6899999
Q ss_pred CCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec------------------CCeEEEEECCCCeEEEEeecC--C
Q 024185 119 SRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT------------------NNNIYVLDAYGGEKRCGFSLE--P 178 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~~--~ 178 (271)
.+.+- ...-.+..|.-.-..+.|.+||+.++.+.. ..++.+.|..+|+.+.+.... .
T Consensus 147 ~r~~f---qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 147 AREGF---QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred ccccc---ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 98533 234456677777889999999999887643 134666666677665543322 3
Q ss_pred CCCceeeEEECCCCCEEEEecCCCc-----EEEEEcCCceeEEEecC-------CcceeEEEEEecCCcEEEEeC---Ce
Q 024185 179 SPNTNTEATFTPDGQYVVSGSGDGT-----LHAWNINTRNEVACWNG-------NIGVVACLKWAPRRAMFVAAS---SV 243 (271)
Q Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~---~~ 243 (271)
....+..++..+||..++-+-..|. -.+=-...++.+.-+.. ....|-+++.+.+..+++..| +.
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 3345888899999886665433331 11111233444443322 123466788877666776666 66
Q ss_pred EEEEcCCCCCCCcCCC
Q 024185 244 LSFWIPNPSSNSTDES 259 (271)
Q Consensus 244 v~iw~~~~~~~~~~~~ 259 (271)
..+||..++....+..
T Consensus 304 ~vi~da~tG~vv~~a~ 319 (366)
T COG3490 304 AVIWDAATGAVVSEAA 319 (366)
T ss_pred EEEEEcCCCcEEeccc
Confidence 9999999998876654
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.7e-06 Score=68.26 Aligned_cols=93 Identities=12% Similarity=0.205 Sum_probs=77.4
Q ss_pred cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCcee-eEEECCCCCEEEEecCCCcEEEEEcCCceeE
Q 024185 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNT-EATFTPDGQYVVSGSGDGTLHAWNINTRNEV 215 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 215 (271)
..+.-+.|+|.-..+|.+..+|.+-+..+. .+.+.++..+..+ ++ +++|.|||+.++.|-.||+|++.|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--VTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc--cceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 567889999999999999999999999887 7777888766665 44 9999999999999999999999999999888
Q ss_pred EEec-CCcceeEEEEEec
Q 024185 216 ACWN-GNIGVVACLKWAP 232 (271)
Q Consensus 216 ~~~~-~~~~~v~~~~~s~ 232 (271)
.... .....|.++-|+|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 7731 2345677777763
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.25 E-value=0.00078 Score=56.15 Aligned_cols=197 Identities=12% Similarity=0.063 Sum_probs=110.3
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE-ecCCcceEEEcCCCCEEEEEecC-----------CeEE
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL-RLRGRPTVAFDQQGLVFAVAMEA-----------GAIK 115 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d-----------~~i~ 115 (271)
+....+||++++++...=..|+....++++|+++++.+... .......+.|.++++.|+....+ ..|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 34578899999865521123444467999999999765432 33323339999998877666432 2478
Q ss_pred EEeCCCCCCCcceEEEecCCccc--eEEEEEcCCCcEEEEEec---C-CeEEEEECCCC----eEEEEeecCCCCCceee
Q 024185 116 LFDSRSYDKGPFDTFLVGGDTAE--VCDIKFSNDGKSMLLTTT---N-NNIYVLDAYGG----EKRCGFSLEPSPNTNTE 185 (271)
Q Consensus 116 i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~---d-~~i~~~d~~~~----~~~~~~~~~~~~~~v~~ 185 (271)
.|++.+....- ...+...... ...+..++|+++++..+. + ..+.+.|+..+ .....+...... ....
T Consensus 206 ~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~ 282 (414)
T PF02897_consen 206 RHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYY 282 (414)
T ss_dssp EEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EEE
T ss_pred EEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-eEEE
Confidence 88887765411 2333332222 568889999999876543 3 45888888764 223333322222 1222
Q ss_pred EEECCCCCEEEEecC---CCcEEEEEcCCcee---EEEecCCcc--eeEEEEEecCCcEEEEeC-----CeEEEEcCC
Q 024185 186 ATFTPDGQYVVSGSG---DGTLHAWNINTRNE---VACWNGNIG--VVACLKWAPRRAMFVAAS-----SVLSFWIPN 250 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~~~~-----~~v~iw~~~ 250 (271)
+.. ..+.+++.... ++.|.-.++.+... ...+..+.. .+..+.. .+.+|+... ..|+++++.
T Consensus 283 v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 283 VDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 322 24445444433 46777778876552 324444544 4445444 455555442 459999998
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.24 E-value=0.0001 Score=59.94 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=91.7
Q ss_pred cCCCCEEEEEe---------cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 99 DQQGLVFAVAM---------EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 99 ~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
|||+++++... ..+.+.+||+++++. ..+......+....|||+|+.++... ++.|.++++.+++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~-----~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI-----TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE-----EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce-----EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 68888777742 246799999998763 33333356789999999999998876 5789999988775
Q ss_pred EEEEeecCCCC----------------CceeeEEECCCCCEEEEecCC-C------------------------------
Q 024185 170 KRCGFSLEPSP----------------NTNTEATFTPDGQYVVSGSGD-G------------------------------ 202 (271)
Q Consensus 170 ~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~d-g------------------------------ 202 (271)
..+ +...... ..-..+-|||||++|+....| .
T Consensus 75 ~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 75 ETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred eEE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 443 2221110 113458899999998854221 1
Q ss_pred -----cEEEEEcCCceeEE-E-e---cCCcceeEEEEEecCCcEEEEe--C-----CeEEEEcCCCCCC
Q 024185 203 -----TLHAWNINTRNEVA-C-W---NGNIGVVACLKWAPRRAMFVAA--S-----SVLSFWIPNPSSN 254 (271)
Q Consensus 203 -----~i~iwd~~~~~~~~-~-~---~~~~~~v~~~~~s~~~~~l~~~--~-----~~v~iw~~~~~~~ 254 (271)
.+.++|+.+++... . . .....-+..+.|+++++.|+.. + -.+.+.|..+++.
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 24445555554321 1 1 1234567899999999844333 2 2377778877654
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=7.6e-06 Score=67.94 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=73.4
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceE-EEEEcCCCcEEEEEecCCeEEEEECCCCeEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR 171 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 171 (271)
+..+.|+|.-..+|.+..+|.+.+...+ .+. ..++.-|...++ +++|.|||+.|++|-.||+|++.|..++..+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR----lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQR----LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cce----eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 4458999999999999999999999988 443 666665566666 9999999999999999999999999999877
Q ss_pred EEeecCCCCCceeeEEECC
Q 024185 172 CGFSLEPSPNTNTEATFTP 190 (271)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~~ 190 (271)
..+..... ..+.++.|+|
T Consensus 98 ~~~~~s~e-~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVE-TDISKGIWDR 115 (665)
T ss_pred eccccccc-cchheeeccc
Confidence 76422211 2377777764
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=4.4e-06 Score=71.77 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=84.8
Q ss_pred EEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 024185 48 RRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP 126 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 126 (271)
-+-..|+|..+++++. -+|-...|.|.|| .++|++.....-+ .+.+++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA-~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-- 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVA-SFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-- 93 (1416)
T ss_pred ccccccCCCCceeEEE-EecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee--
Confidence 3446788888873331 2234456788887 3466654433222 245599999999999998899999999988764
Q ss_pred ceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC
Q 024185 127 FDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY 166 (271)
Q Consensus 127 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~ 166 (271)
......|+.++.-+.|||+|..++++..-|.+.+|...
T Consensus 94 --htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 --HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44456799999999999999999999999999999875
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.00012 Score=59.57 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=104.2
Q ss_pred ccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCC------------
Q 024185 69 TTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD------------ 135 (271)
Q Consensus 69 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------------ 135 (271)
+..+.+.++|+++++....... .......|+|+|+.++... ++.|++++..+++. ...+..+.
T Consensus 20 s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~---~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE---TQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE---EESES--TTTEEESB--HHH
T ss_pred ccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe---EEeccccceeEEcCccceec
Confidence 3456789999999876555544 3456699999999999887 67899999876642 12222220
Q ss_pred ----ccceEEEEEcCCCcEEEEEecC-C-----------------------------------eEEEEECCCCeEEEE-e
Q 024185 136 ----TAEVCDIKFSNDGKSMLLTTTN-N-----------------------------------NIYVLDAYGGEKRCG-F 174 (271)
Q Consensus 136 ----~~~v~~~~~s~~~~~l~~~~~d-~-----------------------------------~i~~~d~~~~~~~~~-~ 174 (271)
-+.-..+-||||+++|+....| . .+.++|+.+++.... .
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~ 175 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDP 175 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE--
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeee
Confidence 1123567899999998876543 1 244455554443211 1
Q ss_pred e--cCCCCCceeeEEECCCCCEEEEe--cCC---CcEEEEEcCCceeEEEec-CCccee---EEEEEe-cCCcEEEEeC-
Q 024185 175 S--LEPSPNTNTEATFTPDGQYVVSG--SGD---GTLHAWNINTRNEVACWN-GNIGVV---ACLKWA-PRRAMFVAAS- 241 (271)
Q Consensus 175 ~--~~~~~~~v~~~~~~~~~~~l~~~--~~d---g~i~iwd~~~~~~~~~~~-~~~~~v---~~~~~s-~~~~~l~~~~- 241 (271)
. .......+..+.|.++++.++.. +.+ ..+.++|..+++...... ...++| ....|. +++..++..+
T Consensus 176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence 1 01222457788999999844433 322 247778887765533321 122222 355555 6666544443
Q ss_pred ----CeEEEEcCCCCC
Q 024185 242 ----SVLSFWIPNPSS 253 (271)
Q Consensus 242 ----~~v~iw~~~~~~ 253 (271)
..|.+++..++.
T Consensus 256 ~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGK 271 (353)
T ss_dssp TTSSEEEEEEETTSSE
T ss_pred cCCCcEEEEEcccccc
Confidence 447777777765
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=0.0011 Score=49.77 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=96.2
Q ss_pred EEEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEe
Q 024185 96 VAFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 96 ~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 174 (271)
+...+|. .+++.|+..+.+...|..+++. .+... -...+.+-+.- -|++++.|...|.+++.+..+|.....+
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~----~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNL----IWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcE----Eeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeee
Confidence 3334444 5777888889999999998885 22210 11223322222 4667999999999999999999887777
Q ss_pred ecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec-CCcEEEEe-CCeEE
Q 024185 175 SLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP-RRAMFVAA-SSVLS 245 (271)
Q Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~-~~~v~ 245 (271)
.....- -......+++..+..|+.|+..+..|.++..++...+...+.-.+.+..| ++.+.++. +|.+.
T Consensus 90 ~~~~~v--k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 90 VILETV--KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred eehhhh--ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 654432 12356688999999999999999999999999988765544444555566 44433332 35443
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.16 E-value=9.6e-05 Score=64.86 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=94.6
Q ss_pred CCEEEEE-ecCCeEEEEeCCCCCCCcceEEEecCCcc-ceEEEEEcCC-------CcEEEEEecCCeEEEEECCCCe--E
Q 024185 102 GLVFAVA-MEAGAIKLFDSRSYDKGPFDTFLVGGDTA-EVCDIKFSND-------GKSMLLTTTNNNIYVLDAYGGE--K 170 (271)
Q Consensus 102 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~-------~~~l~~~~~d~~i~~~d~~~~~--~ 170 (271)
.+.|+.- .....|+-.|++.++. +..+.+ |.. +|..+ .|+ ...-+.|-.+..+..||.|-.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV--V~eW~~--~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV--VEEWKV--HDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE--EEEeec--CCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 3444433 4457899999999986 444443 332 34444 343 2345677778899999998632 2
Q ss_pred EEE-eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEEEEc
Q 024185 171 RCG-FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWI 248 (271)
Q Consensus 171 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~ 248 (271)
+.. ...........|++-+.+| ++|.|+.+|.|++||--..+....+++-+.+|.++..+.||+++++.+ ..+.+++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred eeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 221 1111122347778877777 689999999999999433222334567788999999999999888777 6688888
Q ss_pred CC
Q 024185 249 PN 250 (271)
Q Consensus 249 ~~ 250 (271)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 63
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.16 E-value=0.00057 Score=58.13 Aligned_cols=192 Identities=11% Similarity=0.093 Sum_probs=113.0
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccc------e-EE-eeEEecCCchhhhhhhhhhccCceEEEEEecCcc
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKG------I-RR-GLFLSACLQLMIALCLVLLTTALEYGIFVLMLAS 83 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-v~-~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 83 (271)
..+.++..++.+..++..++...-. +..... . +. .+... ++.. ++.++.++.++-+|.++|+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~----~~~~~~~~~~~~~~~~~g~~~~-~~~~-----V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWR----YDPKLPADRGCCDVVNRGVAYW-DPRK-----VFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhce----eCCCCCccccccccccCCcEEc-cCCe-----EEEecCCCeEEEEECCCCC
Confidence 4556666678888888877732211 221111 0 00 01111 2123 4466789999999999999
Q ss_pred eeEEEecCCc-------c-eEEEcCCCCEEEEEe---------cCCeEEEEeCCCCCCCcceEEEecCCcc---------
Q 024185 84 FQGILRLRGR-------P-TVAFDQQGLVFAVAM---------EAGAIKLFDSRSYDKGPFDTFLVGGDTA--------- 137 (271)
Q Consensus 84 ~~~~~~~~~~-------~-~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~--------- 137 (271)
.+..+..... . ...+. +..++.++ .++.+..+|..+++. .........
T Consensus 132 ~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~----~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 132 QVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL----LWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred EeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce----eeEeeccCCCcCCCCCCC
Confidence 8887755421 1 12222 24455553 367899999999886 333221100
Q ss_pred -----------ce-EEEEEcCCCcEEEEEecCC------------------eEEEEECCCCeEEEEeecCCCCC----ce
Q 024185 138 -----------EV-CDIKFSNDGKSMLLTTTNN------------------NIYVLDAYGGEKRCGFSLEPSPN----TN 183 (271)
Q Consensus 138 -----------~v-~~~~~s~~~~~l~~~~~d~------------------~i~~~d~~~~~~~~~~~~~~~~~----~v 183 (271)
.+ ...++.+.+..++.++.++ .+.-+|..+|+.+..+....... ..
T Consensus 206 ~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~ 285 (488)
T cd00216 206 PDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGP 285 (488)
T ss_pred CCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccC
Confidence 01 1244555566777777655 79999999999988765322210 00
Q ss_pred eeEEEC----CCCC---EEEEecCCCcEEEEEcCCceeEEEec
Q 024185 184 TEATFT----PDGQ---YVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 184 ~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
....+. -++. .++.++.+|.+...|.++|+.+...+
T Consensus 286 s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 286 NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 001111 2333 57788889999999999999987654
No 351
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.14 E-value=0.0018 Score=49.38 Aligned_cols=191 Identities=15% Similarity=0.180 Sum_probs=119.5
Q ss_pred EEEEEcccccce-EEeeEEecCCchhhhhhhhhhccCc--eEEEEEecCcceeEEEecCCc---ceEEEcCCCCEEEEEe
Q 024185 36 MIIEFFATSKGI-RRGLFLSACLQLMIALCLVLLTTAL--EYGIFVLMLASFQGILRLRGR---PTVAFDQQGLVFAVAM 109 (271)
Q Consensus 36 ~~~~~~~~~~~~-v~~~~~s~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~ 109 (271)
..++.+.+.... ...+.+..++.. +-|.+.-| .|+.+|+++++..+....... ..++.. +++...-.-
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~L-----yESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTW 107 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTL-----YESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTW 107 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEE-----EEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEES
T ss_pred EEEEECCCCCcccCccEEecCCCEE-----EEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEe
Confidence 445556655544 445777677776 44555544 788899999998777765542 225554 334444556
Q ss_pred cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC---CceeeE
Q 024185 110 EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEA 186 (271)
Q Consensus 110 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~ 186 (271)
.++...+||..+.+. ...+.+.+ .-..++ .|++.|+.+.....++.+|..+.+..+++...... ..++.+
T Consensus 108 k~~~~f~yd~~tl~~--~~~~~y~~---EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKK--IGTFPYPG---EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp SSSEEEEEETTTTEE--EEEEE-SS---S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred cCCeEEEEccccceE--EEEEecCC---cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 789999999988664 44555443 334444 56777888777889999999888777776544332 345667
Q ss_pred EECCCCCEEEEecCCCcEEEEEcCCceeEEEecC------------C---cceeEEEEEecCCc-EEEEe
Q 024185 187 TFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG------------N---IGVVACLKWAPRRA-MFVAA 240 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~~~~s~~~~-~l~~~ 240 (271)
.|- +|...|-.-....|...|..+|+....+.- + ..-.+.+++.|... +++||
T Consensus 181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 774 677777777778899999999998876521 1 23578999998765 45555
No 352
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.4e-05 Score=62.98 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=88.4
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-EEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCC
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-SMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDG 192 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 192 (271)
++..+..+.+. ..-+.+|...|.+++|||..+ ++..++.+..|++.|+++...+..+..+.. +.+++|+-|.
T Consensus 175 v~~l~~~~fks----sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~---~wSC~wDlde 247 (463)
T KOG1645|consen 175 VQKLESHDFKS----SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQ---IWSCCWDLDE 247 (463)
T ss_pred eEEeccCCcch----hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCC---ceeeeeccCC
Confidence 45555444433 223556778899999999776 678889999999999999988888877633 8899998875
Q ss_pred -CEEEEecCCCcEEEEEcCCceeE-EEecC--CcceeEEEE------EecCCcEEEEeCCeEEEEcCCC
Q 024185 193 -QYVVSGSGDGTLHAWNINTRNEV-ACWNG--NIGVVACLK------WAPRRAMFVAASSVLSFWIPNP 251 (271)
Q Consensus 193 -~~l~~~~~dg~i~iwd~~~~~~~-~~~~~--~~~~v~~~~------~s~~~~~l~~~~~~v~iw~~~~ 251 (271)
++++.|-.+|.|.|||++..+-. ..+.+ ...+|..++ ..+-|.+|+.++-.+..|++..
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~ 316 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVF 316 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhc
Confidence 46667777999999999865432 22221 122333333 2333555555556667776643
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.10 E-value=0.0027 Score=50.17 Aligned_cols=175 Identities=11% Similarity=0.061 Sum_probs=109.5
Q ss_pred ceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEe----------cCCeEEEEeCCCCCCCcceEEEecCC-cc---
Q 024185 72 LEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAM----------EAGAIKLFDSRSYDKGPFDTFLVGGD-TA--- 137 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~-~~--- 137 (271)
++++++|.++++.+..+...-..-+..+|+++.+++++ ....|.+||..+.+. .....+... ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~--~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP--TGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE--EEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc--cceEecCCcchheec
Confidence 58999999999998888776555578899999888753 234799999998653 334444431 21
Q ss_pred -ceEEEEEcCCCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC-Cce
Q 024185 138 -EVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN-TRN 213 (271)
Q Consensus 138 -~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~ 213 (271)
....+++++||++++.... -..|.+-|+..++.+..+.... +..+-=+++ +.+.+-|.||++.-..+. .|+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEET-TEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCC-CceEEEecCCceEEEEECCCCC
Confidence 2234688999999888754 5679999999999988776543 222211222 346777889998888887 455
Q ss_pred eEEEe----cCCcce-eEEEEEecCCc-EEEEe-CCeEEEEcCCCCC
Q 024185 214 EVACW----NGNIGV-VACLKWAPRRA-MFVAA-SSVLSFWIPNPSS 253 (271)
Q Consensus 214 ~~~~~----~~~~~~-v~~~~~s~~~~-~l~~~-~~~v~iw~~~~~~ 253 (271)
...+. .....+ ...-+++..+. ++... .|.|+--|+....
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 54321 111122 23444554443 33332 2777777776554
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=0.0019 Score=48.61 Aligned_cols=135 Identities=11% Similarity=0.021 Sum_probs=89.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
++.|+..+.+.--|..+|+....-... .+.+-+.- -|++++.|..+|.+++.+.+++++ ...+... ..--....
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~--~w~f~~~--~~vk~~a~ 100 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ--IWNFVIL--ETVKVRAQ 100 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh--eeeeeeh--hhhccceE
Confidence 557888888888888888876543222 22221111 477899999999999999999975 2233221 11112335
Q ss_pred EcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEE
Q 024185 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA 206 (271)
Q Consensus 144 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 206 (271)
..+++..+..++.|++.+..|.++..++.+.+..... ..+.+..|-...|+.+...|.+.-
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEEE
Confidence 6778999999999999999999999988886655443 445666773333444444444433
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.03 E-value=0.0011 Score=54.46 Aligned_cols=201 Identities=12% Similarity=0.108 Sum_probs=108.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecC----------CcceEEEc-----CCC---
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLR----------GRPTVAFD-----QQG--- 102 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~-----~~~--- 102 (271)
++...+.|+++..|.-|= ++.|..+|.+.|.|++....+..-... .+.++.|+ .|+
T Consensus 82 ~~~~~g~vtal~~S~iGF------vaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGF------VAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp E---S-SEEEEEE-BTSE------EEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred eeccCCcEeEEecCCCcE------EEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 344567888888875443 678889999999999877665543211 13345553 344
Q ss_pred CEEEEEecCCeEEEEeCC--CCCCCcceE-EEecCCccceEEEE-EcCC-C-------------------cEEEEEecCC
Q 024185 103 LVFAVAMEAGAIKLFDSR--SYDKGPFDT-FLVGGDTAEVCDIK-FSND-G-------------------KSMLLTTTNN 158 (271)
Q Consensus 103 ~~l~~~~~d~~i~i~d~~--~~~~~~~~~-~~~~~~~~~v~~~~-~s~~-~-------------------~~l~~~~~d~ 158 (271)
-.+++|...|.+.+|.+. .+..-.... .....+.+++..+. ++.+ | +.++....+.
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 478889999999999874 111100001 11123556666554 3222 1 1234444467
Q ss_pred eEEEEECCCCeEEEEeecCCCCCceeeEEEC-----CCCCEEEEecCCCcEEEEEcCCceeEEEecCC----cceeEEEE
Q 024185 159 NIYVLDAYGGEKRCGFSLEPSPNTNTEATFT-----PDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLK 229 (271)
Q Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~ 229 (271)
.++++...+.+..++.. .....+..+++- ..+..|++-..+|.++++.+...+.+..+.-+ ...+....
T Consensus 236 ~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp EEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 89999998887766544 222123334442 35667888889999999999998888876543 23456778
Q ss_pred EecCCcEEEEeC-CeEEEEcC
Q 024185 230 WAPRRAMFVAAS-SVLSFWIP 249 (271)
Q Consensus 230 ~s~~~~~l~~~~-~~v~iw~~ 249 (271)
++++|..++-.+ ..+.++.+
T Consensus 314 is~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSSEEEEEEE
T ss_pred ECCCCCEEEEeCcccEEEEEE
Confidence 899999888777 55444433
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.03 E-value=1.4e-06 Score=72.34 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=106.0
Q ss_pred CcceEEEcCCC--CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-CCcEEEEEec----CCeEEEEE
Q 024185 92 GRPTVAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-DGKSMLLTTT----NNNIYVLD 164 (271)
Q Consensus 92 ~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~----d~~i~~~d 164 (271)
...|+++.-+. ..+++|..+|.|.+-..+...-. ......++..++++++|++ |.+.||+|-. |..+.+||
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc--cceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45666665443 47888999999999888765421 1233567788999999999 6677777743 67899999
Q ss_pred CCCC--eEE--EEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCce-eEEEecCCcceeEEEEEec-CCcEEE
Q 024185 165 AYGG--EKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRN-EVACWNGNIGVVACLKWAP-RRAMFV 238 (271)
Q Consensus 165 ~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~ 238 (271)
+.++ .+. ..+... ......+++|..+.+.+.+|.....++++|++... ....+ ....+..+...| .+.+++
T Consensus 136 i~s~ltvPke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccc-cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence 9776 221 222221 11224468999999999999999999999997322 22222 223466778888 778898
Q ss_pred EeC-CeEEEEcC
Q 024185 239 AAS-SVLSFWIP 249 (271)
Q Consensus 239 ~~~-~~v~iw~~ 249 (271)
+-. |.+-+||.
T Consensus 213 s~~dg~iAiwD~ 224 (783)
T KOG1008|consen 213 SNSDGDIAIWDT 224 (783)
T ss_pred ccccCceeeccc
Confidence 887 99999994
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.02 E-value=0.0045 Score=49.75 Aligned_cols=174 Identities=13% Similarity=0.107 Sum_probs=104.0
Q ss_pred ceEEEEEecCcceeEEEecCC---cce---EEEcCC----CCEEEEEec---------C-CeEEEEeCCCC-CC-CcceE
Q 024185 72 LEYGIFVLMLASFQGILRLRG---RPT---VAFDQQ----GLVFAVAME---------A-GAIKLFDSRSY-DK-GPFDT 129 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~---~~~---~~~~~~----~~~l~~~~~---------d-~~i~i~d~~~~-~~-~~~~~ 129 (271)
..|++.|..+.+.+..+.... +.+ +.+..+ ..+|++|+. . |.|.++++... .. ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357888888887776664432 333 444433 467887743 2 88999999884 10 00111
Q ss_pred EEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 130 FLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 130 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
..-....++|++++-- ++. |+++. .+.|.+|++...+ ....-. ...+..+.++.. .+++++.|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAF-YDSPFYITSLSV--FKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEE-E-BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhe-ecceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence 1122345788888766 444 44443 5789999998877 444322 222224655544 466999998888888875
Q ss_pred cCC-ceeEEEe--cCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 209 INT-RNEVACW--NGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 209 ~~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
.+. +..+..+ ......++++.|-++++.++.++ |.+.++..+.
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 543 3323333 23355688999987777777776 8999998864
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0056 Score=50.40 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=122.2
Q ss_pred eEEeeEEecCCchhhhhhhhhhc--cCceEEEEEecCcceeEEEecCC-cceEEEcCCCCEEEEEe-cCCeEEEEeCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLT--TALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLVFAVAM-EAGAIKLFDSRSY 122 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~ 122 (271)
.-..++++|+++.+++ +-. .++++.+.|..+++......... ...++++|+|+.++... .++.+.+.|.+..
T Consensus 117 ~P~~~~~~~~~~~vYV----~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 117 GPVGLAVDPDGKYVYV----ANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred CCceEEECCCCCEEEE----EecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCc
Confidence 4455889999987543 333 47899999999988887765443 34599999999777764 6789999997766
Q ss_pred CCCcceE-EEecCCccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEE-eecCCCCCceeeEEECCCCCEEEE
Q 024185 123 DKGPFDT-FLVGGDTAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCG-FSLEPSPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 123 ~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~ 197 (271)
.... .. .....-...-..+.++|+|+++.+.... +.+...|..++..... ...... ....+..+|+|+++..
T Consensus 193 ~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv 269 (381)
T COG3391 193 SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYV 269 (381)
T ss_pred ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEE
Confidence 5310 00 0001122345678999999987776553 5899999998877665 222221 2455899999999888
Q ss_pred ecC-CCcEEEEEcCCceeEEEecCCcc---eeEEEEEecC
Q 024185 198 GSG-DGTLHAWNINTRNEVACWNGNIG---VVACLKWAPR 233 (271)
Q Consensus 198 ~~~-dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~ 233 (271)
... .+.+.+.|..+............ .+..+++.+.
T Consensus 270 ~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 270 ANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 744 48899999988877776543322 3445555543
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.00 E-value=0.00066 Score=58.63 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=84.1
Q ss_pred cceEEEcCCCCEEEEEe------cCC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-------
Q 024185 93 RPTVAFDQQGLVFAVAM------EAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------- 157 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------- 157 (271)
+...+++|+|+.++... .|+ .+.+++... .. ... ..+ .......|+|||+.+++....
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~---~~l-t~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA---VQV-LEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc---eee-ecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 44589999999887765 233 555556422 21 122 222 237889999999988877543
Q ss_pred -----CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEE---EEcCCcee-E---EEe-cCCcce
Q 024185 158 -----NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHA---WNINTRNE-V---ACW-NGNIGV 224 (271)
Q Consensus 158 -----~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~-~---~~~-~~~~~~ 224 (271)
+.+.+.+++.++... ... ..|..+.|||||+.++... +|.|++ -....|+. + ..+ .+-...
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~--g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVP--GPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccC--CCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 222222333322211 111 3489999999999988766 467776 34334431 1 112 222334
Q ss_pred eEEEEEecCCcEEEEeC-Ce--EEEEcCCC
Q 024185 225 VACLKWAPRRAMFVAAS-SV--LSFWIPNP 251 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~~-~~--v~iw~~~~ 251 (271)
+.++.|.+++.+++... +. +...++..
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDG 528 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCC
Confidence 68899999998665444 33 44444443
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.99 E-value=0.008 Score=51.62 Aligned_cols=241 Identities=12% Similarity=0.064 Sum_probs=130.9
Q ss_pred eeEEeeecceeeEEEEeeccceeeEEEEEcccccc--eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEe
Q 024185 12 QALLFARQNIILILLESLCGIYQCMIIEFFATSKG--IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILR 89 (271)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 89 (271)
++++++..++.++.++..+|...-... ...+.. .+.+--.-.++..++...-.-.+.+|.|.-+|.++|+.+..+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~--~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKK--NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecc--cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 456777778889999988884332210 111110 1111001113332111000001237899999999998776652
Q ss_pred cC---------------------------------Ccc-eEEEcCCCCEEEEEecC-----C-----------eEEEEeC
Q 024185 90 LR---------------------------------GRP-TVAFDQQGLVFAVAMEA-----G-----------AIKLFDS 119 (271)
Q Consensus 90 ~~---------------------------------~~~-~~~~~~~~~~l~~~~~d-----~-----------~i~i~d~ 119 (271)
.- .++ .+++.|+..+++.+..+ + .|...|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 21 011 15777777777776522 2 6778888
Q ss_pred CCCCCCcceEEEec--CCcc-------ceEEEEEcCCCc---EEEEEecCCeEEEEECCCCeEEEEeec-----------
Q 024185 120 RSYDKGPFDTFLVG--GDTA-------EVCDIKFSNDGK---SMLLTTTNNNIYVLDAYGGEKRCGFSL----------- 176 (271)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~-------~v~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~----------- 176 (271)
++++. ...++ .|.. ...=+....+|+ .++.+.++|.+++.|.++|+.+...+.
T Consensus 279 ~TG~~----~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~ 354 (527)
T TIGR03075 279 DTGKI----KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVD 354 (527)
T ss_pred ccCCE----EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccC
Confidence 98886 33322 2221 111122334665 677899999999999999987522100
Q ss_pred -CCC-C--------------------------CceeeEEECCCCCEEEEecC----------------------------
Q 024185 177 -EPS-P--------------------------NTNTEATFTPDGQYVVSGSG---------------------------- 200 (271)
Q Consensus 177 -~~~-~--------------------------~~v~~~~~~~~~~~l~~~~~---------------------------- 200 (271)
... + ..-..++++|+..+++....
T Consensus 355 ~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p 434 (527)
T TIGR03075 355 LKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKP 434 (527)
T ss_pred CCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCC
Confidence 000 0 00012556666555543222
Q ss_pred -----CCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 201 -----DGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 201 -----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
-|.|.-+|+.+++..-..+.......+. ..-.+.+++.++ |.++.+|.++++.+-+.+
T Consensus 435 ~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 435 PPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred CCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 2468888998988877665322111222 122344555555 889999999998775554
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00036 Score=57.36 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=95.1
Q ss_pred cCCCCEEE-EEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcE-------EEEEecCCeEEEEECCCC-e
Q 024185 99 DQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKS-------MLLTTTNNNIYVLDAYGG-E 169 (271)
Q Consensus 99 ~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------l~~~~~d~~i~~~d~~~~-~ 169 (271)
..+.+.|+ .+.....++-.|++.++. +..+.+ +.. |.-+.+.|+.+. -+.|-.|..|.-||.|-. +
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKI--VeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKI--VEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred ccccceEeeCCCCcCcceeeeccccee--eeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc
Confidence 33444443 445556788889999886 334443 333 777778886432 344566888999998732 2
Q ss_pred -EEEEeecCCCC--CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-CeEE
Q 024185 170 -KRCGFSLEPSP--NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SVLS 245 (271)
Q Consensus 170 -~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~ 245 (271)
.+...+.+... ....|.+-..+| +++.|+.+|.|++||--.......+++-..+|..+..+.||+++++.+ ..+.
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLL 495 (644)
T ss_pred ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEE
Confidence 22222222221 234555555555 799999999999999733333445688889999999999999888777 6666
Q ss_pred EEcCC
Q 024185 246 FWIPN 250 (271)
Q Consensus 246 iw~~~ 250 (271)
+-++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 66653
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.86 E-value=0.0077 Score=47.18 Aligned_cols=229 Identities=12% Similarity=0.083 Sum_probs=124.9
Q ss_pred ecceeEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE-
Q 024185 9 PITQALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI- 87 (271)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~- 87 (271)
...+.|++|+++| +..++.......... . +...|..+...+.-+.+++ -.|+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i---~--~~~~I~ql~vl~~~~~llv------Lsd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI---L--KLSSITQLSVLPELNLLLV------LSDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE---e--ecceEEEEEEecccCEEEE------EcCCccEEEEchhhcccccc
Confidence 4457899998877 666666222111111 1 1222888888887776433 2359999999875443321
Q ss_pred --------------E-ecCCcceEE--EcCCC-CEEEEEecCCeEEEEeCCCCCC---CcceEEEecCCccceEEEEEcC
Q 024185 88 --------------L-RLRGRPTVA--FDQQG-LVFAVAMEAGAIKLFDSRSYDK---GPFDTFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 88 --------------~-~~~~~~~~~--~~~~~-~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~ 146 (271)
+ ...++...+ -...+ ..|+++. ...|.+|....... .....+.+ ...+.+++|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i~~~- 147 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL---PDPPSSIAFL- 147 (275)
T ss_pred ccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc---CCCcEEEEEe-
Confidence 1 111222233 11233 3445444 55888888766421 12333333 3778899999
Q ss_pred CCcEEEEEecCCeEEEEECCCCeEEEEeecCCC----------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEE
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS----------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVA 216 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 216 (271)
++.++.|..+ ...+.|+.++.....+..... ...+..+.. +++.+|++- +..-.+.|. .|+..+
T Consensus 148 -~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r 221 (275)
T PF00780_consen 148 -GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSR 221 (275)
T ss_pred -CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCc
Confidence 4567777655 488899987765443321111 011222333 345666643 222333333 444333
Q ss_pred --EecCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCCcCCCCCCc
Q 024185 217 --CWNGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNSTDESTDPQ 263 (271)
Q Consensus 217 --~~~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~~~~~~~~~ 263 (271)
.+. ......++++. ..+|+..+ +.|.||++.++++......+..
T Consensus 222 ~~~i~-W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 222 KSTIQ-WSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred ccEEE-cCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECCCE
Confidence 222 22345566664 34666655 8899999999988766654433
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.0027 Score=50.23 Aligned_cols=185 Identities=12% Similarity=0.138 Sum_probs=101.2
Q ss_pred hhccCceEEEEEecCcceeEEEecC-Ccce-EEEcCCCCEEEEEecCCeEEEEeCCCCCC-CcceEEEecCCccceEEEE
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLR-GRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDK-GPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~ 143 (271)
+--..+.|.-|+..+++.. .+... ...+ ......+ .|+++. ..+.+++.+++.. .......-.......+...
T Consensus 42 ~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 42 VDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred EeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCC-eEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 4445667777777766532 33332 3333 4444444 444443 3356666654442 0010100011124456788
Q ss_pred EcCCCcEEEEEec-----------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecC-CCcEEEEEcCC
Q 024185 144 FSNDGKSMLLTTT-----------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSG-DGTLHAWNINT 211 (271)
Q Consensus 144 ~s~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 211 (271)
..|+|.+-+.... -|.++.+|. .+..++.+..+-. .-+.++||||++.++.+.. .+.|+-|++..
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~--~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT--IPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE--ecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 8999886554332 133554543 4544444433221 2455999999987776654 57888887752
Q ss_pred --c----ee-EEEecCCcceeEEEEEecCCcEEEEeC---CeEEEEcCCCCCCCcCCC
Q 024185 212 --R----NE-VACWNGNIGVVACLKWAPRRAMFVAAS---SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 212 --~----~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~v~iw~~~~~~~~~~~~ 259 (271)
+ +. ...+....+..-.++...+|++.+++- +.|.+|+.+ +++.....
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 1 11 122223345556788888998875443 389999999 66554443
No 364
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.86 E-value=0.0017 Score=55.82 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=78.4
Q ss_pred cceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE--CCCCCEEEEecCCCcEEEEEcC----
Q 024185 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF--TPDGQYVVSGSGDGTLHAWNIN---- 210 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~---- 210 (271)
....-+.-|.-++..++-+....+.|||.+.+.....-.. .....|.++.| .|+|+.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444455555555444544566799999998876554332 22244888988 5789999999999999988542
Q ss_pred -----CceeEEEe--cCCc-ceeEEEEEecCCcEEEEeCCeEEEEcCCCC
Q 024185 211 -----TRNEVACW--NGNI-GVVACLKWAPRRAMFVAASSVLSFWIPNPS 252 (271)
Q Consensus 211 -----~~~~~~~~--~~~~-~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~ 252 (271)
+...+..+ ..|. .+|.+..|.++|.+++.+++.+.|+|-.-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD 158 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence 12233333 3333 578999999999988888899999986443
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0013 Score=50.07 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=79.2
Q ss_pred ceEEEEEcCCC-cEEEEEecCCe-EEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcC
Q 024185 138 EVCDIKFSNDG-KSMLLTTTNNN-IYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNIN 210 (271)
Q Consensus 138 ~v~~~~~s~~~-~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 210 (271)
....++++|.. .-++.+-.-|+ ..++|....+.+.++.........-.-.|||||.+|+..-.| |.|-+||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34557788853 34555555444 678898888777776655544334446799999999876443 689999998
Q ss_pred Cc-eeEEEecCCcceeEEEEEecCCcEEEEeCCeEEEE
Q 024185 211 TR-NEVACWNGNIGVVACLKWAPRRAMFVAASSVLSFW 247 (271)
Q Consensus 211 ~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw 247 (271)
.+ ..+.++..|.-....+.|.+||+.++.+.|-|..-
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth 186 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH 186 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence 53 44667888887788999999999999998766655
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.80 E-value=0.0045 Score=51.62 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=86.9
Q ss_pred EEEcCCCCEEEEE-ecCC----eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC-----------Ce
Q 024185 96 VAFDQQGLVFAVA-MEAG----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN-----------NN 159 (271)
Q Consensus 96 ~~~~~~~~~l~~~-~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~ 159 (271)
.+++||++++|.+ +..| .++++|+++++. + .-.+.. .....+.|.+|++.|+....+ ..
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--l-~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--L-PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--E-EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--c-CCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 7889999999877 3334 599999999863 1 111111 222349999998888766533 23
Q ss_pred EEEEECCCCeEE--EEeecCCCCCceeeEEECCCCCEEEEecC---C-CcEEEEEcCCc----eeEEEecCCccee-EEE
Q 024185 160 IYVLDAYGGEKR--CGFSLEPSPNTNTEATFTPDGQYVVSGSG---D-GTLHAWNINTR----NEVACWNGNIGVV-ACL 228 (271)
Q Consensus 160 i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~v-~~~ 228 (271)
|+.|.+.+.... ..+...........+..++|+++++.... + ..+.+.|+..+ .....+..+...+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888766432 33444444332567889999999875433 2 45888888764 2333332222223 333
Q ss_pred EEecCCcEEEEeC-----CeEEEEcCCCCC
Q 024185 229 KWAPRRAMFVAAS-----SVLSFWIPNPSS 253 (271)
Q Consensus 229 ~~s~~~~~l~~~~-----~~v~iw~~~~~~ 253 (271)
... ++.+++... +.|.-.++....
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence 333 454544443 445555665544
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.77 E-value=0.00014 Score=37.30 Aligned_cols=38 Identities=37% Similarity=0.691 Sum_probs=31.2
Q ss_pred eEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEE
Q 024185 169 EKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 208 (271)
++...+..+... +.++.|+|+++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGP--VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCc--eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445556655554 99999999999999999999999996
No 368
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.75 E-value=0.011 Score=45.67 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=88.0
Q ss_pred CcceEEEcCCCCEEEEEe---cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE-CCC
Q 024185 92 GRPTVAFDQQGLVFAVAM---EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD-AYG 167 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d-~~~ 167 (271)
.....+++++++.++... ....++++...... ...+.+ ..+....|++++...+....+...+++. ..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-----~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-----RPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-----eeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 345699999999887765 33456666544332 111222 3788889999987666666566666663 333
Q ss_pred CeEEE-EeecCCCCCceeeEEECCCCCEEEEec---CCCcEEEEEcC---Cc------eeEEEecCCcceeEEEEEecCC
Q 024185 168 GEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGS---GDGTLHAWNIN---TR------NEVACWNGNIGVVACLKWAPRR 234 (271)
Q Consensus 168 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~s~~~ 234 (271)
++... ..........|..+.+||||..++... .++.|.+--+. .+ ..+.........+..++|.+++
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 33222 222221111599999999999888665 34677766543 22 1112222334578999999999
Q ss_pred cEEEEeC
Q 024185 235 AMFVAAS 241 (271)
Q Consensus 235 ~~l~~~~ 241 (271)
.+++.+.
T Consensus 178 ~L~V~~~ 184 (253)
T PF10647_consen 178 TLVVLGR 184 (253)
T ss_pred EEEEEeC
Confidence 9888776
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.74 E-value=0.00014 Score=37.31 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=31.2
Q ss_pred EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 129 TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 129 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
...+..|...+.++.|++++..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344557888999999999999999999999999996
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.019 Score=47.72 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=95.4
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE----ecCCcc-e----EEEcCCCCEEEEEecCCeEEE
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL----RLRGRP-T----VAFDQQGLVFAVAMEAGAIKL 116 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~-~----~~~~~~~~~l~~~~~d~~i~i 116 (271)
+.+.++.|+.+... +.-..||.++++|+. |+....+ ...++. + ..+..+| ++.-..++.+++
T Consensus 81 ~~iv~~~wt~~e~L------vvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEEL------VVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeE------EEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEE
Confidence 67777888887764 455899999999985 3331111 111111 1 1222244 333344555554
Q ss_pred EeCCCCCCCcceEEEecC-------CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEEC
Q 024185 117 FDSRSYDKGPFDTFLVGG-------DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFT 189 (271)
Q Consensus 117 ~d~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~ 189 (271)
.+-............... +........++.+....+....++.+.+.+-...+. +. . .+.+..++.|
T Consensus 152 v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~--~~~i~~iavS 225 (410)
T PF04841_consen 152 VNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-S--DGPIIKIAVS 225 (410)
T ss_pred EeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-C--CCCeEEEEEC
Confidence 433221110000000000 000000023444444444445555565444322111 11 1 1348999999
Q ss_pred CCCCEEEEecCCCcEEEEEcCCceeEEEecCC-cceeEEEEEecCCcEEEEeCCeEEEE
Q 024185 190 PDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-IGVVACLKWAPRRAMFVAASSVLSFW 247 (271)
Q Consensus 190 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~v~iw 247 (271)
|+++++|.-..+|.+.+....-.+.+..+... ......+.|.-+...++.-...+.+.
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lv 284 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLV 284 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEE
Confidence 99999999999999999887666666555433 33456777776544333333334443
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.73 E-value=0.0045 Score=40.46 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=63.0
Q ss_pred EEcCCC-CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 97 AFDQQG-LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 97 ~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
.|..|| +.|++|+.|..|++|+-.. . ...+. ..+.|.++.-... ..++.+..+|+|-+|+- .+.+...+
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e--~----~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiK 78 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE--I----VAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIK 78 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc--E----EEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeec
Confidence 334444 5899999999999999663 2 22222 3467888887776 56899999999999984 33344444
Q ss_pred cCCCCCceeeEEE-CCC--C-CEEEEecCCCcEE
Q 024185 176 LEPSPNTNTEATF-TPD--G-QYVVSGSGDGTLH 205 (271)
Q Consensus 176 ~~~~~~~v~~~~~-~~~--~-~~l~~~~~dg~i~ 205 (271)
.... +.++++ ..+ | .-|++|-.+|.|-
T Consensus 79 SK~~---~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 SKNQ---VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCC---eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3333 444443 333 2 2677888888764
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00025 Score=62.86 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=78.7
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS 175 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 175 (271)
.+..-.+..+++|+..|.+-..|+... ..+ ...-..-.++|++++|+.+|+.++.|-.+|.|.+||...++..+.+.
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGN-LGP--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcc-cch--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 333334557889998999988888653 211 12222345789999999999999999999999999999999988887
Q ss_pred cCCCC-CceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 176 LEPSP-NTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 176 ~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
.+..+ ..+..+.+..++..++++...|. +|.+
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 77665 33444555566666777777775 4543
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.68 E-value=0.01 Score=48.44 Aligned_cols=185 Identities=11% Similarity=0.105 Sum_probs=92.1
Q ss_pred hhhccCceEEEEEecCc----ceeEEEecCC------c--c-eEEEcCCCCEEEEEe--c----CCeEEEEeCCCCCCCc
Q 024185 66 VLLTTALEYGIFVLMLA----SFQGILRLRG------R--P-TVAFDQQGLVFAVAM--E----AGAIKLFDSRSYDKGP 126 (271)
Q Consensus 66 ~s~~~dg~i~iwd~~~~----~~~~~~~~~~------~--~-~~~~~~~~~~l~~~~--~----d~~i~i~d~~~~~~~~ 126 (271)
+-|-..+.|++.|+.+. +..++++... . + .+-.-|+|+.++++- . -|.+.++|-++.+.
T Consensus 92 ~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v-- 169 (461)
T PF05694_consen 92 LPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV-- 169 (461)
T ss_dssp EEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E--
T ss_pred eeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccc--
Confidence 34557889999998743 4445554321 1 1 133457888888762 2 24688888887654
Q ss_pred ceEEEec-CCccceEEEEEcCCCcEEEEEec--------------------CCeEEEEECCCCeEEEEeecCCCCCceee
Q 024185 127 FDTFLVG-GDTAEVCDIKFSNDGKSMLLTTT--------------------NNNIYVLDAYGGEKRCGFSLEPSPNTNTE 185 (271)
Q Consensus 127 ~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~--------------------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 185 (271)
....... +....-..+-|.|..+.+++... ..++.+||+.+.+.++++...........
T Consensus 170 ~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLE 249 (461)
T PF05694_consen 170 KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLE 249 (461)
T ss_dssp EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEE
T ss_pred cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEE
Confidence 2222221 11234567888998888887652 25899999999999999887654434556
Q ss_pred EEEC--CCCCEEEEecC-CCcEEEEEc-CCcee----EEEecC-----C------------cceeEEEEEecCCcEEEEe
Q 024185 186 ATFT--PDGQYVVSGSG-DGTLHAWNI-NTRNE----VACWNG-----N------------IGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 186 ~~~~--~~~~~l~~~~~-dg~i~iwd~-~~~~~----~~~~~~-----~------------~~~v~~~~~s~~~~~l~~~ 240 (271)
+.|. |+..+-++++. ..+|..|-- ..++- +..+.. . ..-|+.+..|.|.++|..+
T Consensus 250 vRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs 329 (461)
T PF05694_consen 250 VRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS 329 (461)
T ss_dssp EEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE
T ss_pred EEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE
Confidence 6664 55555444433 445555543 33321 222211 1 2347899999999999988
Q ss_pred C---CeEEEEcCCCC
Q 024185 241 S---SVLSFWIPNPS 252 (271)
Q Consensus 241 ~---~~v~iw~~~~~ 252 (271)
+ |.++.||+...
T Consensus 330 ~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 330 NWLHGDVRQYDISDP 344 (461)
T ss_dssp ETTTTEEEEEE-SST
T ss_pred cccCCcEEEEecCCC
Confidence 7 99999999764
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.67 E-value=0.0057 Score=47.89 Aligned_cols=147 Identities=12% Similarity=0.090 Sum_probs=89.6
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEee----
Q 024185 100 QQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS---- 175 (271)
Q Consensus 100 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---- 175 (271)
..++.|+.|.++| +++++...... +.... +...|..+...|+-+.+++-+ |+.++++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~-~~~i~----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK-PTRIL----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc-ceeEe----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 4578899998888 99999933221 11111 234499999999877776665 5999999987644333110
Q ss_pred --------cCCCCCceeeEE--ECCCCCEEEEecCCCcEEEEEcCCc-----eeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 176 --------LEPSPNTNTEAT--FTPDGQYVVSGSGDGTLHAWNINTR-----NEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 176 --------~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
.......+...+ -.+.+...+.......|.+|..... +..+++.- ...+..++|. ++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEE
Confidence 001111243333 1123333344444558888887653 45555543 3568899998 5566666
Q ss_pred C-CeEEEEcCCCCCCCc
Q 024185 241 S-SVLSFWIPNPSSNST 256 (271)
Q Consensus 241 ~-~~v~iw~~~~~~~~~ 256 (271)
. +...+.|+.++....
T Consensus 155 ~~~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPSE 171 (275)
T ss_pred eCCceEEEecCCCCceE
Confidence 4 789999998765543
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0017 Score=53.64 Aligned_cols=138 Identities=11% Similarity=0.082 Sum_probs=95.3
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC-cceEEEcCCCCE-------EEEEecCCeEEEEeCCCCCCCcceEEEecCC-
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQGLV-------FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGD- 135 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~- 135 (271)
+.++.....++-.|++.|+.+.....+. ++.+.+.|+.+. -+.|-.+..|.-||++-.... ......+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eeeeeeccc
Confidence 5577777888889999999998887764 577888887531 244556888999998743321 11112222
Q ss_pred ---ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE-EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 136 ---TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC-GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 136 ---~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
.....|.+-..+| ++++|+.+|.|++||- .+.... .+.+-..+ |..+..+.||++++..+.. .+.+.++
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~--I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDA--IKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCc--eeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 2346677666666 6999999999999995 554333 35555544 9999999999998876644 5555554
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.62 E-value=0.02 Score=46.88 Aligned_cols=222 Identities=9% Similarity=0.069 Sum_probs=103.9
Q ss_pred eecceeeEEEEeeccceeeEEEEEccc---cc----ceEEeeEEecCCchhhhhhh--hhhccCceEEEEEecCcceeEE
Q 024185 17 ARQNIILILLESLCGIYQCMIIEFFAT---SK----GIRRGLFLSACLQLMIALCL--VLLTTALEYGIFVLMLASFQGI 87 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~s~~~~~~~~~~l--~s~~~dg~i~iwd~~~~~~~~~ 87 (271)
++....+..++....-.++...+..+. +. ..-...-.-|+|+.++.. + .-|..-|.+.+.|-++.+....
T Consensus 94 gL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~-lGd~~G~g~Ggf~llD~~tf~v~g~ 172 (461)
T PF05694_consen 94 GLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISA-LGDADGNGPGGFVLLDGETFEVKGR 172 (461)
T ss_dssp BTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEE-EEETTS-S--EEEEE-TTT--EEEE
T ss_pred eeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEe-ccCCCCCCCCcEEEEcCccccccce
Confidence 346788999998876667776666654 11 112223344566552220 0 1223345677788877776666
Q ss_pred EecCC-----cceEEEcCCCCEEEEEec--------------------CCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 88 LRLRG-----RPTVAFDQQGLVFAVAME--------------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 88 ~~~~~-----~~~~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
.+... ..-+.|.|..+.++++.. ..++.+||..+.+. .+...+.........+
T Consensus 173 We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~--~Q~idLg~~g~~pLEv 250 (461)
T PF05694_consen 173 WEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL--LQTIDLGEEGQMPLEV 250 (461)
T ss_dssp --SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE--EEEEES-TTEEEEEEE
T ss_pred eccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE--eeEEecCCCCCceEEE
Confidence 54432 233788888888877632 35899999998876 5666665444456677
Q ss_pred EEcCC--CcEEEEEe-cCCeEEEEEC-CCCeE----EEEeecCC---C------------CCceeeEEECCCCCEEEEec
Q 024185 143 KFSND--GKSMLLTT-TNNNIYVLDA-YGGEK----RCGFSLEP---S------------PNTNTEATFTPDGQYVVSGS 199 (271)
Q Consensus 143 ~~s~~--~~~l~~~~-~d~~i~~~d~-~~~~~----~~~~~~~~---~------------~~~v~~~~~~~~~~~l~~~~ 199 (271)
.|..+ ..+=++++ -..+|..|-- +.++- +..+.... . +.-++.+.+|.|.++|...+
T Consensus 251 RflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~ 330 (461)
T PF05694_consen 251 RFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSN 330 (461)
T ss_dssp EE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEE
T ss_pred EecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEc
Confidence 77654 44433333 3455555543 33321 22221110 0 23478899999999998766
Q ss_pred C-CCcEEEEEcCCcee---EEEec-C---------------CcceeEEEEEecCCcEEEEeC
Q 024185 200 G-DGTLHAWNINTRNE---VACWN-G---------------NIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 200 ~-dg~i~iwd~~~~~~---~~~~~-~---------------~~~~v~~~~~s~~~~~l~~~~ 241 (271)
. .|.++.||+..... ..++. + -.+...-+..|.||+.|...+
T Consensus 331 W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 331 WLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 5 89999999986433 22221 0 012346688899999877664
No 377
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.016 Score=48.15 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=88.7
Q ss_pred eEEEEEecCcceeEEEec--CCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce----EEEecCCccceEEEEEcC
Q 024185 73 EYGIFVLMLASFQGILRL--RGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD----TFLVGGDTAEVCDIKFSN 146 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~v~~~~~s~ 146 (271)
.|.+|+. .|+.+..+.- +.+-.+.|+.+.+ |++...||.+++||+.... .+. .....-....+....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC
Confidence 5889988 5666666543 3455589988655 5566679999999986433 000 000011112222333444
Q ss_pred CCcEEEEEecCCeEEEEECCCCe-EEEEeec-CCCC------Cceee-EEECCCCCEEEEecCCCcEEEEEcCCceeEEE
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGE-KRCGFSL-EPSP------NTNTE-ATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~------~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
+|- +.-..++.+.+.+--... ..+.+.. .... ..... ..++.+....+....++.+.+.+-...+.
T Consensus 138 ~Gi--vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 138 NGI--VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CCE--EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 553 333344555544322211 1111110 0000 00000 22334444444444444555333222111
Q ss_pred ecCCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 218 WNGNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 218 ~~~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+. ..+++..++.||+|+++|.-. |.+.+.+.+-.+...+..
T Consensus 213 i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 213 ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 22 235799999999999888765 778787766555444443
No 378
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.61 E-value=0.015 Score=43.26 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=82.7
Q ss_pred ceEEEcCCCCEEEEEecC---------CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEE-ecCCeEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEA---------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLT-TTNNNIYVL 163 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~~ 163 (271)
+.-..+|+|++++-...| |.++.|-....- ..+.+.-+--..++|+.+.+.+... +.+-.|.-|
T Consensus 112 NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v------~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 112 NDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV------ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred ccCccCCCCceeeeeeccccccccccccEEEEeccCCCc------eeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 336778999984332222 344444432211 1111122334568899888777654 557778777
Q ss_pred E--CCCCeE-----EEEeecCC--CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec
Q 024185 164 D--AYGGEK-----RCGFSLEP--SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP 232 (271)
Q Consensus 164 d--~~~~~~-----~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 232 (271)
| ..+|.. +..++... .....-.++...+|++.++.-..++|...|..+|+.+.++.-....|++++|--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 555532 22222110 111122366677899888888889999999999999999987788899999964
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.59 E-value=0.026 Score=45.62 Aligned_cols=211 Identities=15% Similarity=0.142 Sum_probs=100.3
Q ss_pred eeEEeeec---ceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE
Q 024185 12 QALLFARQ---NIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL 88 (271)
Q Consensus 12 ~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 88 (271)
.+++|... +.++..++..++ ...+.-.+.........++|+.+.+ +-......++-.|+++.+....+
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~-----~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPDDRAL-----YYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TTSSEE-----EEEETTTEEEEEETTT--EEEEE
T ss_pred CEEEEEeccCCCcceEEEEcccC----EEEECccCCCCCccceEEecCCCeE-----EEEECCCeEEEEECCcCcEEEEE
Confidence 56777654 567777777666 3333333322323356777887763 22234467888899888876666
Q ss_pred ecCCcce--EEE--cCCCCEEEEEec----------------------CCeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 89 RLRGRPT--VAF--DQQGLVFAVAME----------------------AGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 89 ~~~~~~~--~~~--~~~~~~l~~~~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
..+.... ..| +.|+..++-.-. ...|.-.|+.+++. ...+ .....+..+
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~-~~~~wlgH~ 193 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVF-EDTDWLGHV 193 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEE-EESS-EEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEE-ecCccccCc
Confidence 6554332 344 445665543211 12466667777664 2222 234567889
Q ss_pred EEcC-CCcEEEEEec------CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe-----cCCCcEEEEEcC
Q 024185 143 KFSN-DGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG-----SGDGTLHAWNIN 210 (271)
Q Consensus 143 ~~s~-~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~ 210 (271)
.|+| |..+|+.|-+ |.+|.+.+.. +...+.+..+.....+..=-|.|||..+..- +.+..|.-+|+.
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 9999 4555666543 3345555533 3334444333333345556789999977642 224467788888
Q ss_pred CceeEEEecCCcceeEEEEEecCCcEEEE
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 239 (271)
+++....... .+...+--++||++++-
T Consensus 273 t~~~~~~~~~--p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 273 TGERRRLMEM--PWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp T--EEEEEEE---SEEEEEE-TTSSEEEE
T ss_pred CCCceEEEeC--CceeeeEEcCCCCEEEe
Confidence 8765443221 23345666888887754
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00054 Score=60.89 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=73.7
Q ss_pred CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeE
Q 024185 147 DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVA 226 (271)
Q Consensus 147 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 226 (271)
.+..++.|+..|.+-..|+... .-.-..+.....+|++++|+.+|++++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 4556888998999999887643 111122233336699999999999999999999999999999999998877666555
Q ss_pred EE---EEecCCcEEEEeCCeEEEEcCC
Q 024185 227 CL---KWAPRRAMFVAASSVLSFWIPN 250 (271)
Q Consensus 227 ~~---~~s~~~~~l~~~~~~v~iw~~~ 250 (271)
++ .+..++..+.++...-.+|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSFWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCceEEEE
Confidence 44 3444566777776222266553
No 381
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.48 E-value=0.018 Score=47.28 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=78.7
Q ss_pred cceEEEcCCCCEEEEEe-----------cCC-eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeE
Q 024185 93 RPTVAFDQQGLVFAVAM-----------EAG-AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNI 160 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~-----------~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 160 (271)
...++|.++|+.+++-. ..+ .|.+++-.++.-.......+.........+++.++| |++++.. .|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-DI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-eE
Confidence 45589999999766642 223 777776543221111122333333456889999988 4444444 44
Q ss_pred EEE-ECCCC-----e--EEE-EeecCC--CCCceeeEEECCCCCEEEEecCC-------------------CcEEEEEcC
Q 024185 161 YVL-DAYGG-----E--KRC-GFSLEP--SPNTNTEATFTPDGQYVVSGSGD-------------------GTLHAWNIN 210 (271)
Q Consensus 161 ~~~-d~~~~-----~--~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~iwd~~ 210 (271)
..+ |.... + .+. .+.... .......+.|.|||.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 444 44211 2 111 122210 11236679999999876654421 445666665
Q ss_pred CceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
.++....-.++. ....++|+|+|+++++-.
T Consensus 173 g~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcC-CCccceECCCCCEEEEcc
Confidence 544322223333 346899999999877654
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.47 E-value=0.017 Score=50.04 Aligned_cols=174 Identities=6% Similarity=-0.045 Sum_probs=87.4
Q ss_pred ceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCC-----eEEEEeCCCCCCCcceEEEecCCccceEEEEE
Q 024185 72 LEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKF 144 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (271)
..+..||..++.....-+.. ........-+++..+.|+.++ .+..||..+.+..... .+.........+
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~--~mp~~r~~~~~~-- 395 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP--DMPIALSSYGMC-- 395 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC--CCCcccccccEE--
Confidence 34677888766532211111 111122233677777787653 4888998876641111 111111111112
Q ss_pred cCCCcEEEEEecC-----------------------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC
Q 024185 145 SNDGKSMLLTTTN-----------------------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 145 s~~~~~l~~~~~d-----------------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
.-+|+..+.|+.+ ..+..||..+.+-...-...... .......-+++..+.|+.+
T Consensus 396 ~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 396 VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIK 473 (557)
T ss_pred EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCC
Confidence 2257777777754 24777887766532211111111 1111122356666777654
Q ss_pred ------CcEEEEEcCC-ce--eEEEecCCcceeEEEEEecCCcEEEEeC--C--eEEEEcCCCCC
Q 024185 202 ------GTLHAWNINT-RN--EVACWNGNIGVVACLKWAPRRAMFVAAS--S--VLSFWIPNPSS 253 (271)
Q Consensus 202 ------g~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~--~v~iw~~~~~~ 253 (271)
..+..||..+ .+ .+..++........+. -+|++.+.|+ + .+..||+.+.+
T Consensus 474 ~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 474 DEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence 2467899886 33 3334433322222222 2677778876 3 58888887765
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.46 E-value=0.012 Score=38.49 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=56.1
Q ss_pred eEEEEEcC---CC-cEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 139 VCDIKFSN---DG-KSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 139 v~~~~~s~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
|+++++.. || +.|++|+.|..|++|+- .+.+..+..... +.+++-... ..++.+..+|+|-+|+-. +.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~---v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDK---VTSLCSLGG-GRFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccc---eEEEEEcCC-CEEEEEecCCEEEEEeCc--ce
Confidence 45565544 32 57999999999999973 466666654443 767776665 568889999999999863 33
Q ss_pred EEEecCCcceeEEEEEec
Q 024185 215 VACWNGNIGVVACLKWAP 232 (271)
Q Consensus 215 ~~~~~~~~~~v~~~~~s~ 232 (271)
+...+.- ..+.++.+..
T Consensus 74 lWRiKSK-~~~~~~~~~D 90 (111)
T PF14783_consen 74 LWRIKSK-NQVTSMAFYD 90 (111)
T ss_pred eeeeccC-CCeEEEEEEc
Confidence 3444322 2355665543
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.45 E-value=0.042 Score=44.48 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=84.5
Q ss_pred hhccCceEEEEEecCcceeEEEecCC-cceEEEcCCC-CEEEEEec---CC-eEEEEeCCCCCCCcceEEEecCC--ccc
Q 024185 67 LLTTALEYGIFVLMLASFQGILRLRG-RPTVAFDQQG-LVFAVAME---AG-AIKLFDSRSYDKGPFDTFLVGGD--TAE 138 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~---d~-~i~i~d~~~~~~~~~~~~~~~~~--~~~ 138 (271)
.+-....|.--|+.+|+....+.... ...+.|+|.. ..|+.|-+ +. .-+||-+++.... ...+..+ ...
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~~e~ 239 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRMEGES 239 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEE
T ss_pred hhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCCCcc
Confidence 33344566677888888766665443 3458888854 55666543 11 1255655433221 1111112 234
Q ss_pred eEEEEEcCCCcEEEEEec-----CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC------------
Q 024185 139 VCDIKFSNDGKSMLLTTT-----NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD------------ 201 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 201 (271)
+..=-|.|||..+..-+. +..|.-+|+.+++........ ....+-.++||++++-=+.|
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--------------
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCCCCccccccccce
Confidence 555679999998776432 446777888887654433221 14456678999987643332
Q ss_pred ----CcEEEEEcCCceeEEEe---------cCCcc-eeEEEEEecCCcEEEEeC---CeEEEE
Q 024185 202 ----GTLHAWNINTRNEVACW---------NGNIG-VVACLKWAPRRAMFVAAS---SVLSFW 247 (271)
Q Consensus 202 ----g~i~iwd~~~~~~~~~~---------~~~~~-~v~~~~~s~~~~~l~~~~---~~v~iw 247 (271)
-.|+++++..++..... .++.. .-..+.|+|||++++-.| |...||
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 14667788766543211 11111 125689999999888776 554444
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.00021 Score=52.45 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=83.2
Q ss_pred EEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC-eEEEEeecCCCCCce
Q 024185 105 FAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG-EKRCGFSLEPSPNTN 183 (271)
Q Consensus 105 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v 183 (271)
+..-+.+|.|.-++++..+.. .....-+.....- -.-+..++.|+.+|.|++|..... .....+...... ..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s---~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~-i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKES---CRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES-ID 105 (238)
T ss_pred hccccCCcccccchhhhhhhh---hhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhccccc-ce
Confidence 334456777877777654421 1111111111111 123456899999999999987521 111111111111 11
Q ss_pred eeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCc-ceeEEEEEecCCcEEEEe--C--CeEEEEcCCCC
Q 024185 184 TEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNI-GVVACLKWAPRRAMFVAA--S--SVLSFWIPNPS 252 (271)
Q Consensus 184 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~--~~v~iw~~~~~ 252 (271)
..+.--.++.+..+++.+|.|+.|++..++.+...-.|. .++.....+..++.++.+ | ..++.|++...
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 112223345678889999999999999888887777676 556666666667777776 4 55888887654
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.38 E-value=0.0012 Score=36.07 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=29.8
Q ss_pred ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK 170 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 170 (271)
...|.+++|+|...++|.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 357999999999999999999999999998 5543
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.00083 Score=49.41 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=77.1
Q ss_pred hhhhccCceEEEEEecCcceeEEE-ecCCcce-EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE-ecCCccceEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGIL-RLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL-VGGDTAEVCD 141 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~ 141 (271)
+..-+.||.++-++++..+.-..- ..+ .+ .....-+..+++|+.+|.|++|....... ... ...-...+.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~--~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFI--DEGQRVVTASAKLMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhh--hcceeecccCceEEeecccceEEEecCCccch----HHHhhhccccccee
Confidence 345566777777766543311100 011 11 22223356799999999999999873221 111 1111122222
Q ss_pred -EEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEe--cCCCcEEEEEcC
Q 024185 142 -IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSG--SGDGTLHAWNIN 210 (271)
Q Consensus 142 -~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~ 210 (271)
+.-..++.+..+++.||.|+.|+..-++.+.....|.. ........+..+++++.+ +.|..++.|++.
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 22333566788899999999999987777665555542 113334444455555555 556666666664
No 388
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.35 E-value=0.009 Score=49.15 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=68.9
Q ss_pred ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCC------CCCceeeEEEC-----CCC---CEEEE
Q 024185 132 VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP------SPNTNTEATFT-----PDG---QYVVS 197 (271)
Q Consensus 132 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~v~~~~~~-----~~~---~~l~~ 197 (271)
+....++|++++.|.= -++++|..+|.+.+.|+|....+..-.... ....++++.|+ .|+ -.+++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 3344688999999854 479999999999999999888877633322 22457777775 233 47888
Q ss_pred ecCCCcEEEEEcC--C-ceeEE----EecCCcceeEEEE-EecC---------------------CcEEEEeC-CeEEEE
Q 024185 198 GSGDGTLHAWNIN--T-RNEVA----CWNGNIGVVACLK-WAPR---------------------RAMFVAAS-SVLSFW 247 (271)
Q Consensus 198 ~~~dg~i~iwd~~--~-~~~~~----~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~-~~v~iw 247 (271)
|...|.+.+|.+. . +.... ....+.++|..+. ++.+ ..+++.++ ..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999774 1 21111 1123445554444 2211 12455555 889999
Q ss_pred cCCCCCCCc
Q 024185 248 IPNPSSNST 256 (271)
Q Consensus 248 ~~~~~~~~~ 256 (271)
...+.+...
T Consensus 241 ~~~~~k~~~ 249 (395)
T PF08596_consen 241 KPPKSKGAH 249 (395)
T ss_dssp -TT---EEE
T ss_pred eCCCCcccc
Confidence 887766433
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.28 E-value=0.055 Score=45.80 Aligned_cols=118 Identities=13% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCccceEEEEEcCC----CcEEEEEecCCeEEEEECC-----CCeEEEEeecCC---CCCceeeEEECCCCCEEEEecCC
Q 024185 134 GDTAEVCDIKFSND----GKSMLLTTTNNNIYVLDAY-----GGEKRCGFSLEP---SPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 134 ~~~~~v~~~~~s~~----~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
+....|..+.|.|- -..+++.-....|.+|.+. .++.+..-..+- -+.--..+.|+|....|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34467999999994 3245555667899999874 223322211111 11112347899998888765554
Q ss_pred CcEEEEEcCC--ceeEEEecCCcceeEEEEEecCCcEEEEeC-C--eEEEEcCCCC
Q 024185 202 GTLHAWNINT--RNEVACWNGNIGVVACLKWAPRRAMFVAAS-S--VLSFWIPNPS 252 (271)
Q Consensus 202 g~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--~v~iw~~~~~ 252 (271)
..-.+++++. .+....+. ..+.|.|.+|.+||+.|+.+- . .-++||-...
T Consensus 134 dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 3334555543 33333444 456799999999999877764 2 3678886544
No 390
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.27 E-value=0.052 Score=41.63 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=88.6
Q ss_pred cceEEEcCCCC-EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe--
Q 024185 93 RPTVAFDQQGL-VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-- 169 (271)
Q Consensus 93 ~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-- 169 (271)
+..++|+|+.+ ++++....+.|..++.+ ++. +....+.+ .+..-.+++..++.++++.-.++.+.++++....
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v--lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV--LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT---E--EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE--EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 56699999866 55555667888888874 443 45555655 3568889998888777766668999999884321
Q ss_pred ----EEEEee--cC-CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC---ceeEEEe--------cCCcceeEEEEEe
Q 024185 170 ----KRCGFS--LE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT---RNEVACW--------NGNIGVVACLKWA 231 (271)
Q Consensus 170 ----~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~--------~~~~~~v~~~~~s 231 (271)
....+. .. .....+..++|+|.++.|+.+-+..-..+|.++. ...+... ......+.+++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 112222 22 1223478899999988888887776666776653 2222211 1123457889999
Q ss_pred cCC-cEEEEeC--CeEEEEcC
Q 024185 232 PRR-AMFVAAS--SVLSFWIP 249 (271)
Q Consensus 232 ~~~-~~l~~~~--~~v~iw~~ 249 (271)
|.. ++++.++ ..+..+|.
T Consensus 180 p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-T
T ss_pred CCCCeEEEEECCCCeEEEECC
Confidence 964 4444443 56777773
No 391
>PHA03098 kelch-like protein; Provisional
Probab=97.24 E-value=0.033 Score=48.18 Aligned_cols=174 Identities=7% Similarity=-0.036 Sum_probs=85.4
Q ss_pred eEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 73 EYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
.+..||..+.+....-... ........-+++.++.|+.+ ..+..||..+.+..... .+...... .+.+ .
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~lp~~r~~-~~~~-~ 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP--PLIFPRYN-PCVV-N 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC--CcCcCCcc-ceEE-E
Confidence 4667887766543221111 11111222366777777754 35778898876641111 11111111 1122 2
Q ss_pred CCCcEEEEEecC------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC--------cEEEEEcCC
Q 024185 146 NDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG--------TLHAWNINT 211 (271)
Q Consensus 146 ~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~ 211 (271)
-+++..+.|+.+ ..+..||..+++-...-......... .+...+++..+.|+.++ .+.+||..+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG--CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc--eEEEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 356777777632 46888998776543221111111111 12223566667776432 388899877
Q ss_pred ceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCCC
Q 024185 212 RNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~~ 254 (271)
++-... +.........+ ..++++++.|+ +.+.+||+++.+=
T Consensus 466 ~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 466 NKWTELSSLNFPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CceeeCCCCCcccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 654321 11111111112 22677777775 3588999887643
No 392
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.22 E-value=0.12 Score=44.65 Aligned_cols=183 Identities=9% Similarity=0.021 Sum_probs=110.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCC---cc---e-------EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRG---RP---T-------VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~---~-------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 131 (271)
+..++.++.|+-.|.++|+.+..+.... .. + +++ .+..++.++.++.+..+|.++++. ...
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~----~W~ 145 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV----VWS 145 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE----Eee
Confidence 3455667889999999999887765421 11 1 122 234677788899999999999986 333
Q ss_pred ec--CCccceEEEEEcC---CCcEEEEEec------CCeEEEEECCCCeEEEEeecCCCC--------------------
Q 024185 132 VG--GDTAEVCDIKFSN---DGKSMLLTTT------NNNIYVLDAYGGEKRCGFSLEPSP-------------------- 180 (271)
Q Consensus 132 ~~--~~~~~v~~~~~s~---~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~-------------------- 180 (271)
.. .+.. -..+.-+| ++ .++++.. +|.|.-+|.++|+.+.++..-...
T Consensus 146 ~~~~~~~~-~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKA-GYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccc-cccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 22 1111 01111122 34 4555432 689999999999987765432110
Q ss_pred ---------Cce-eeEEECCCCCEEEEecCC-----C-----------cEEEEEcCCceeEEEecC--Ccc-------ee
Q 024185 181 ---------NTN-TEATFTPDGQYVVSGSGD-----G-----------TLHAWNINTRNEVACWNG--NIG-------VV 225 (271)
Q Consensus 181 ---------~~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~--~~~-------~v 225 (271)
..+ ..++++|...+++.+..+ + +|.-.|+++|+..-.++. |.. ..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 001 124677776666655422 2 677889999998776643 221 11
Q ss_pred EEEEEecCCc---EEEEeC--CeEEEEcCCCCCCC
Q 024185 226 ACLKWAPRRA---MFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 226 ~~~~~s~~~~---~l~~~~--~~v~iw~~~~~~~~ 255 (271)
.-+....+|+ .++.+. |.+.+.|-++++++
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1222224665 666666 88999999999875
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.21 E-value=0.066 Score=46.55 Aligned_cols=182 Identities=11% Similarity=0.133 Sum_probs=98.6
Q ss_pred hhhhccC------ceEEEEEecCcceeEEEecCCcce-EEE-cCCCCEEEEEecCC-----eEEEEeCCCCCCCcceEEE
Q 024185 65 LVLLTTA------LEYGIFVLMLASFQGILRLRGRPT-VAF-DQQGLVFAVAMEAG-----AIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 65 l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~ 131 (271)
.++||.| .++..||..+++....-+.....+ .+. .-+|...++|+.|| ++..||..+.+........
T Consensus 336 Yv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 336 YVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred EEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC
Confidence 5678888 356678887776443222221111 111 23677888888886 5888999887762222111
Q ss_pred ecCCccceEEEE-EcCCCcEEEEEecC------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC--
Q 024185 132 VGGDTAEVCDIK-FSNDGKSMLLTTTN------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG-- 202 (271)
Q Consensus 132 ~~~~~~~v~~~~-~s~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 202 (271)
....... -.-+|+..++|+.+ .++..||..+++-...-.......... ++ .-++...+.|+.|+
T Consensus 416 -----~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 416 -----TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTS 488 (571)
T ss_pred -----cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCC
Confidence 1222222 22357777888754 457788877765433211111111111 22 23677778888776
Q ss_pred ---cEEEEEcCCceeEEE--ecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCCCC
Q 024185 203 ---TLHAWNINTRNEVAC--WNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSSNS 255 (271)
Q Consensus 203 ---~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~~~ 255 (271)
++..||..+.+-... +......+. ++ .-++.+.+.|+ +++..||..+.+=.
T Consensus 489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVAPMTSPRSAVG-VV-VLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ccceEEEEcCCCCceeEcccCcccccccc-EE-EECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 377788877654332 222222221 22 22456666664 45889988776543
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.18 E-value=0.16 Score=45.62 Aligned_cols=190 Identities=10% Similarity=0.013 Sum_probs=113.3
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc--------ce--EEEc----------------CCCCEEEEEecCCeEEEEe
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR--------PT--VAFD----------------QQGLVFAVAMEAGAIKLFD 118 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~--~~~~----------------~~~~~l~~~~~d~~i~i~d 118 (271)
+..++.++.|.-.|.++|+.+..+..... .| +++. ..+.+++.++.|+.+.-.|
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD 276 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD 276 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence 44567788898899999998877754321 11 2221 1345788888999999999
Q ss_pred CCCCCCCcceEEEecCCccce-------------EEEEEcC--CCcEEEEEec----------CCeEEEEECCCCeEEEE
Q 024185 119 SRSYDKGPFDTFLVGGDTAEV-------------CDIKFSN--DGKSMLLTTT----------NNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v-------------~~~~~s~--~~~~l~~~~~----------d~~i~~~d~~~~~~~~~ 173 (271)
.++++. ...+. ..+.+ ..+.-.| .+..+++|+. +|.|+-+|.++|+.+..
T Consensus 277 A~TGk~----~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 277 ADTGKL----CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred CCCCCE----EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999986 33321 11111 1112222 1345666642 68899999999999887
Q ss_pred eecCC---------C------CCce-eeEEECCCCCEEEEec------------------CCCcEEEEEcCCceeEEEec
Q 024185 174 FSLEP---------S------PNTN-TEATFTPDGQYVVSGS------------------GDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 174 ~~~~~---------~------~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~ 219 (271)
+.... . ...+ ...+++|....++.+. ..++|.-.|.++|+..-.++
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 65310 0 0001 2345566555544321 12467778889999877664
Q ss_pred C--Ccc-------eeEEEEEec-CCc---EEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 220 G--NIG-------VVACLKWAP-RRA---MFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 220 ~--~~~-------~v~~~~~s~-~~~---~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
. |.- ...-+.+.. +|+ .++.++ |.+.+.|-++++.+-..+
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 3 211 111122322 553 666666 889999999998776543
No 395
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.18 E-value=0.085 Score=42.41 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=81.7
Q ss_pred ceEEEEEecCc----ceeEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc
Q 024185 72 LEYGIFVLMLA----SFQGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS 145 (271)
Q Consensus 72 g~i~iwd~~~~----~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 145 (271)
|.+.++++... ..+..+... ..++.++.+-+.+|+++. ++.|.+|++...+. ........ ....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~-l~~~~~~~-~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKT-LLKKAFYD-SPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSS-EEEEEEE--BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCccc-chhhheec-ceEEEEEEecc
Confidence 99999999884 222222111 223333333344555555 58999999988771 12222222 22356666555
Q ss_pred CCCcEEEEEecCCeEEEEECCC-CeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 146 NDGKSMLLTTTNNNIYVLDAYG-GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 146 ~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
+++++.|.....+.++..+. ++.+..+.....+.+++++.+-++++.++.+..+|.+.++...
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 55899998878888775443 4434444444445668888888777789999999999999876
No 396
>PRK10115 protease 2; Provisional
Probab=97.17 E-value=0.16 Score=45.32 Aligned_cols=201 Identities=7% Similarity=-0.022 Sum_probs=102.2
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEEEEecC------CeEEEEeCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDSR 120 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~ 120 (271)
.+....+||++++++...=..|+..-.+++.|+.+++.+...-......++|.+|++.|+....+ ..|+.+++.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 46667889999986552222344455688889988864322211112449999999877766432 368888888
Q ss_pred CCCCCcceEEEecCCccceE-EEEEcCCCcEEEEEec---CCeEEEEECC--CCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 121 SYDKGPFDTFLVGGDTAEVC-DIKFSNDGKSMLLTTT---NNNIYVLDAY--GGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---d~~i~~~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
++...-...+. ....... ....+.++++++..+. ++.+.+++.. +++....+. ..... ...+. +..+.+
T Consensus 208 t~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~l 282 (686)
T PRK10115 208 TPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDH-EYSLD-HYQHRF 282 (686)
T ss_pred CChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCC-EEEEE-eCCCEE
Confidence 77321112222 2222232 3334448887765543 4678898853 333222222 22221 22222 233333
Q ss_pred EEEecC---CCcEEEEEcCCceeEEEecCC--cceeEEEEEecCCcEEEEeC--C--eEEEEcCCCCC
Q 024185 195 VVSGSG---DGTLHAWNINTRNEVACWNGN--IGVVACLKWAPRRAMFVAAS--S--VLSFWIPNPSS 253 (271)
Q Consensus 195 l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~--~--~v~iw~~~~~~ 253 (271)
.+.... ...|...++........+-.+ ...+..+.+..+ .++++.. + .+.+++..+++
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCc
Confidence 333322 223444455421122233233 236788888733 3444433 3 36677765433
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.14 E-value=0.077 Score=41.05 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=87.4
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEE-EecCCcceEEEcCCCCEEEEEecCCeEEEEe-CCCCCC
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGI-LRLRGRPTVAFDQQGLVFAVAMEAGAIKLFD-SRSYDK 124 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~ 124 (271)
.+...+++++++.+++ ....++.-.+|-...+..... +.+......+|++++...+....+....++. ...++.
T Consensus 25 ~~~s~AvS~dg~~~A~----v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAA----VSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEE----EEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 5777999999987443 222333344444443433333 3555666689999987766666566666663 333332
Q ss_pred CcceEEEecCCccceEEEEEcCCCcEEEEEe---cCCeEEEEECC---CCeEEE---EeecC-CCCCceeeEEECCCCCE
Q 024185 125 GPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT---TNNNIYVLDAY---GGEKRC---GFSLE-PSPNTNTEATFTPDGQY 194 (271)
Q Consensus 125 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~~~d~~---~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~ 194 (271)
.+... ....-...|..+++||||..++... .++.|.+--+. .+.... ..... .....+..+.|.+++.+
T Consensus 101 ~~~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEe-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 11111 1111112899999999999988766 25677776542 220111 01111 11234889999999998
Q ss_pred EEEecCCC
Q 024185 195 VVSGSGDG 202 (271)
Q Consensus 195 l~~~~~dg 202 (271)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 87766543
No 398
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.10 E-value=0.11 Score=41.96 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=85.1
Q ss_pred CcceEEEcCCCCEEEEEecCCe------EEEEeCCCC--CC---CcceEEEecCCcc--------ceEEEEEcCCCcEEE
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGA------IKLFDSRSY--DK---GPFDTFLVGGDTA--------EVCDIKFSNDGKSML 152 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~------i~i~d~~~~--~~---~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~ 152 (271)
+...+.+.+++..+++.+++|. ++.+++... .. .......+....+ ..-++++.++|.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 3455888866666677777777 665555431 11 0111111222111 334778877887777
Q ss_pred EEecC------CeEEEEECCCCeEEEEeec-------------CCCCCceeeEEECCCCCEEEEecC-----CC------
Q 024185 153 LTTTN------NNIYVLDAYGGEKRCGFSL-------------EPSPNTNTEATFTPDGQYVVSGSG-----DG------ 202 (271)
Q Consensus 153 ~~~~d------~~i~~~d~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~-----dg------ 202 (271)
+.-.+ ..|..++.. |+....+.. ........+++++|||+.|+++.+ |+
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 66556 789999866 665544421 112245788999999996665433 22
Q ss_pred -----cEEEEEcCC-cee----EEEecC-----CcceeEEEEEecCCcEEEE
Q 024185 203 -----TLHAWNINT-RNE----VACWNG-----NIGVVACLKWAPRRAMFVA 239 (271)
Q Consensus 203 -----~i~iwd~~~-~~~----~~~~~~-----~~~~v~~~~~s~~~~~l~~ 239 (271)
.|..||..+ ++. .+.+.. ....++.+.+-+++++|+.
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234455544 322 223332 3467899999999997764
No 399
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.016 Score=48.01 Aligned_cols=139 Identities=11% Similarity=0.056 Sum_probs=89.1
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCC-------EEEEEecCCeEEEEeCCCCCCCcceEEEecCCcc
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGL-------VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA 137 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 137 (271)
+..|+....++-.|++.|+.+.....+.-..+.+.|+.+ .-++|-.+..|.-.|.+-... .........
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN----Ki~v~esKd 558 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN----KIKVVESKD 558 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC----ceeeeeehh
Confidence 447777888888899999999999888766888888542 123444456666667654332 111111222
Q ss_pred ceEEEEEcC----CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 138 EVCDIKFSN----DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 138 ~v~~~~~s~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
.++.-.||. ..-++++++..|.|++||.-.-+....+.+-... |..+..+.+|+++++.+.. .+.+-|++
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~a--Ik~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDA--IKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccc--eeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 333333333 3457999999999999995333322334444433 8889999999998877754 56666653
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.07 E-value=0.0032 Score=34.35 Aligned_cols=33 Identities=12% Similarity=0.332 Sum_probs=29.1
Q ss_pred CceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
..|..++|+|...++|.++.+|.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 45889999999999999999999999998 5554
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.094 Score=40.59 Aligned_cols=202 Identities=8% Similarity=0.054 Sum_probs=126.8
Q ss_pred cccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCC---cceEEEcCCCCEEEEEecCCeEEEE
Q 024185 41 FATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRG---RPTVAFDQQGLVFAVAMEAGAIKLF 117 (271)
Q Consensus 41 ~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~ 117 (271)
..+....++++.|+|+.+. |.+......-.++=...|+.+.+++... ...+.+..++++.++--.++.++++
T Consensus 81 i~g~~~nvS~LTynp~~rt-----LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRT-----LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcce-----EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEE
Confidence 4555667999999999998 5566666666677666889888886553 4458999888888888888888888
Q ss_pred eCCCCCC--Ccc-eEEEec--CC-ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE-E--EEeecCCCC-----Cce
Q 024185 118 DSRSYDK--GPF-DTFLVG--GD-TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK-R--CGFSLEPSP-----NTN 183 (271)
Q Consensus 118 d~~~~~~--~~~-~~~~~~--~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~--~~~~~~~~~-----~~v 183 (271)
.+..... ... ....+. .+ ....-.++|.|..+.|+.+-+..-+.+|....... + +....+... ..+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 7765432 000 022222 12 45678899999988898888877777776643221 0 100111100 236
Q ss_pred eeEEECCC-CCEEEEecCCCcEEEEEcCCceeEEEecCCc---------ceeEEEEEecCCcEEEEeC-CeEEEEc
Q 024185 184 TEATFTPD-GQYVVSGSGDGTLHAWNINTRNEVACWNGNI---------GVVACLKWAPRRAMFVAAS-SVLSFWI 248 (271)
Q Consensus 184 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~-~~v~iw~ 248 (271)
.++.|++. +..++-+.+++.+.-.|.. |+.+..+.-+. -....++..++|.+-+++- +-...|.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~F~ 310 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYRFT 310 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcceecc
Confidence 66888864 5566667777777777764 55444432111 1235677787777555543 5444443
No 402
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.84 E-value=0.34 Score=43.71 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=91.3
Q ss_pred EEEcCCC--CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC--------------Ce
Q 024185 96 VAFDQQG--LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------------NN 159 (271)
Q Consensus 96 ~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------~~ 159 (271)
+.|+.+. ..++++. .+.+.+..+..-+. +...++.- ......+++.+....+++.+.- ..
T Consensus 676 c~f~s~a~~d~l~~~~-~~~l~i~tid~iqk--l~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASAN-GGALTIGTIDEIQK--LHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred cccccccCCceEEEec-CCceEEEEecchhh--cceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEE
Confidence 4444332 3455554 45677777665443 22333322 2456667777744444443321 24
Q ss_pred EEEEECCCCeEEEEeecCCCC--CceeeEEECCC-CCEEEEec----------CCCcEEEEEcCCceeEEEecCC--cce
Q 024185 160 IYVLDAYGGEKRCGFSLEPSP--NTNTEATFTPD-GQYVVSGS----------GDGTLHAWNINTRNEVACWNGN--IGV 224 (271)
Q Consensus 160 i~~~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~--~~~ 224 (271)
++++|-.+.+.+...+..... ..+.++.|..| +.+++.|. ..|.|.++.+..++.++....+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 677776666655543332222 33555668777 67777764 2478889888775555544322 234
Q ss_pred eEEEEEecCCcEEEEeCCeEEEEcCCCCCCCcCCC
Q 024185 225 VACLKWAPRRAMFVAASSVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 225 v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~~~~~ 259 (271)
+.++.- -+|+++|.-+..|++|+..+++.+..+.
T Consensus 832 v~aL~~-fngkllA~In~~vrLye~t~~~eLr~e~ 865 (1096)
T KOG1897|consen 832 VYALVE-FNGKLLAGINQSVRLYEWTTERELRIEC 865 (1096)
T ss_pred eeehhh-hCCeEEEecCcEEEEEEccccceehhhh
Confidence 444432 2688888888999999999986555444
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.84 E-value=0.17 Score=40.07 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=62.9
Q ss_pred cCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEc-C
Q 024185 133 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNI-N 210 (271)
Q Consensus 133 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~ 210 (271)
..-.+.+..+.-++||+++++++.-....-||--... ..+... . ...+.++.|+|++...+.+ ..|.|+.=+. .
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~-~--~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN-S--SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---S--SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC-c--cceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3445778899999999988888766666777743211 111111 1 2349999999998866644 7788888772 2
Q ss_pred CceeEEE----ecCCcceeEEEEEecCCcEEEEeCCeEEEEcCCCCC
Q 024185 211 TRNEVAC----WNGNIGVVACLKWAPRRAMFVAASSVLSFWIPNPSS 253 (271)
Q Consensus 211 ~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~ 253 (271)
..+.-.. .......+..++|.+++...++|++-..+...+.++
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGk 263 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGK 263 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTS
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCc
Confidence 2222221 112233478999999999888887334445555554
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.80 E-value=0.37 Score=43.44 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=90.0
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCc----------c----eEEEcC--CCCEEEEEec----------CCeEEEEe
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGR----------P----TVAFDQ--QGLVFAVAME----------AGAIKLFD 118 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~----~~~~~~--~~~~l~~~~~----------d~~i~i~d 118 (271)
++.++.|+.+.-.|.++|+....+...+. . ...-.| .+..+++|+. +|.|+-+|
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 55678899999999999998876643210 0 011112 1345666642 58899999
Q ss_pred CCCCCCCcceEEEecC------------------CccceEEEEEcCCCcEEEEEe------------------cCCeEEE
Q 024185 119 SRSYDKGPFDTFLVGG------------------DTAEVCDIKFSNDGKSMLLTT------------------TNNNIYV 162 (271)
Q Consensus 119 ~~~~~~~~~~~~~~~~------------------~~~~v~~~~~s~~~~~l~~~~------------------~d~~i~~ 162 (271)
.++++. ...... ....-...++.|+...++.+. ..+.|.-
T Consensus 343 a~TGkl----~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 343 VNTGAL----VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred CCCCcE----eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 999986 332210 000112344555444444322 1356777
Q ss_pred EECCCCeEEEEeecCCCC-------CceeeEEECC-CCC---EEEEecCCCcEEEEEcCCceeEEEe
Q 024185 163 LDAYGGEKRCGFSLEPSP-------NTNTEATFTP-DGQ---YVVSGSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~ 218 (271)
.|.++|+....++...+. ....-+.+.. +|+ .++.++.+|.+.+.|-++|+.+...
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 888899988777642221 1111123333 563 7889999999999999999987754
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.78 E-value=0.15 Score=44.40 Aligned_cols=109 Identities=14% Similarity=0.212 Sum_probs=70.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEc--CCCcEEEEEecCCeEEEEECC-------
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTTNNNIYVLDAY------- 166 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~~~d~~------- 166 (271)
+.-+.-++.-++-+...++.|||.+.+.. .....+ ...+.|.++.|. |+|+.+++.+....|.+|.-.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~l--E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVL--EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEE--EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 55555455444444456899999988764 222223 346789999986 589999999999999998642
Q ss_pred --CCeEEEEeecCCC-CCceeeEEECCCCCEEEEecCCCcEEEEEc
Q 024185 167 --GGEKRCGFSLEPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNI 209 (271)
Q Consensus 167 --~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 209 (271)
+...++.+..... +..|.+..|.++|.+++.++ +.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1223444322211 13488899999997665443 46777764
No 406
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.76 E-value=0.38 Score=43.44 Aligned_cols=171 Identities=10% Similarity=0.016 Sum_probs=105.6
Q ss_pred eEEEEEecCcceeEEEecCC------cceEEEcCC-CCEEEEEec----------CCeEEEEeCCC-CCCCcceEEEecC
Q 024185 73 EYGIFVLMLASFQGILRLRG------RPTVAFDQQ-GLVFAVAME----------AGAIKLFDSRS-YDKGPFDTFLVGG 134 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~-~~~l~~~~~----------d~~i~i~d~~~-~~~~~~~~~~~~~ 134 (271)
.++++|.++.+.+...+... +..+.|..| +.++++|.. .|.|.++.... ++.+......+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v-- 828 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV-- 828 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee--
Confidence 45666666655444333221 223567777 667777742 57888888877 33211222222
Q ss_pred CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC--c
Q 024185 135 DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT--R 212 (271)
Q Consensus 135 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~ 212 (271)
.+.+.++.-- +|+++| +-+..|++|++.+.+.++.-..+..+ +..+...-.|..++.|..-+++.+...+. |
T Consensus 829 -~Gav~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~--~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg 902 (1096)
T KOG1897|consen 829 -KGAVYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNISNP--IIALDLQVKGDEIAVGDLMRSITLLQYKGDEG 902 (1096)
T ss_pred -ccceeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcccCC--eEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence 2445554422 466554 44568999999888777765555554 77788888899999998888777665543 3
Q ss_pred eeEEEe-cCCcceeEEEEEecCCcEEEEeC-CeEEEEcCCC
Q 024185 213 NEVACW-NGNIGVVACLKWAPRRAMFVAAS-SVLSFWIPNP 251 (271)
Q Consensus 213 ~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~ 251 (271)
.....- .-+..+.+++.+-.+..++.+-. |.+.+-..++
T Consensus 903 ~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 903 NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence 343322 34667888888887766665544 7777666554
No 407
>PHA02713 hypothetical protein; Provisional
Probab=96.71 E-value=0.055 Score=47.02 Aligned_cols=149 Identities=5% Similarity=-0.034 Sum_probs=75.8
Q ss_pred hhhhccCc-----eEEEEEecCcceeEE--EecCCcceEEEcCCCCEEEEEecC-----------------------CeE
Q 024185 65 LVLLTTAL-----EYGIFVLMLASFQGI--LRLRGRPTVAFDQQGLVFAVAMEA-----------------------GAI 114 (271)
Q Consensus 65 l~s~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d-----------------------~~i 114 (271)
.+.||.++ .+..||..+++.... ++..........-+++..+.|+.+ ..+
T Consensus 355 YviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~v 434 (557)
T PHA02713 355 YAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKV 434 (557)
T ss_pred EEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceE
Confidence 44566543 477888877653321 111111111112367777777654 257
Q ss_pred EEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC------CeEEEEECCC-CeEE--EEeecCCCCCceee
Q 024185 115 KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN------NNIYVLDAYG-GEKR--CGFSLEPSPNTNTE 185 (271)
Q Consensus 115 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~~d~~~-~~~~--~~~~~~~~~~~v~~ 185 (271)
..||.++.+...... +.. .....-...-+++..+.|+.+ ..+..||..+ .+-. ..+...... ...
T Consensus 435 e~YDP~td~W~~v~~--m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~ 508 (557)
T PHA02713 435 IRYDTVNNIWETLPN--FWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHT 508 (557)
T ss_pred EEECCCCCeEeecCC--CCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--cee
Confidence 789988776421111 111 111111122346666777653 2467898876 4432 222222211 211
Q ss_pred EEECCCCCEEEEecCCC--cEEEEEcCCceeEEEecCC
Q 024185 186 ATFTPDGQYVVSGSGDG--TLHAWNINTRNEVACWNGN 221 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~ 221 (271)
+. -+++..++|+.+| .+..||..+.+-...-+.|
T Consensus 509 ~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 509 IL--HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred EE--ECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 22 2678888998887 6777887766554433334
No 408
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.068 Score=43.89 Aligned_cols=141 Identities=14% Similarity=0.145 Sum_probs=86.4
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEE--EE
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKR--CG 173 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~ 173 (271)
+-|. |.+..+.+...|.+.-|.+..........+.. ...++|.++.||+|.+.+|+--.+.+|.+++....+.. ..
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 4443 33334444445667677665443222223333 24579999999999999999999999999997433322 22
Q ss_pred eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC-ceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT-RNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
.+.......|...+|+.+. -+|.....| +-+|-+.. .+.++..+.|+..|.-..|.|+-+.+.-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 2223333448889998764 455544444 55555432 33445556777888888999988754444
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.68 E-value=0.17 Score=37.95 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred cceEEeeEEecCCchhhhhhhhhhcc--------CceEEEEEecCcceeEEEecCCc-ceEEEcCCCCEEEEE-ecCCeE
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTT--------ALEYGIFVLMLASFQGILRLRGR-PTVAFDQQGLVFAVA-MEAGAI 114 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~--------dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~d~~i 114 (271)
+.+.+.--.+|+|++... +.+. .|.++.|-. .++.......-.+ +.++|+.+.+.++.- +.+-+|
T Consensus 108 knR~NDgkvdP~Gryy~G----tMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGG----TMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeee----eeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 445666778899997433 1111 133333332 1111111111122 448999888766655 566788
Q ss_pred EEEe--CCCCCCC-cceEEEecCC----ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 115 KLFD--SRSYDKG-PFDTFLVGGD----TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 115 ~i~d--~~~~~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
..|| ..++... +...+.+... ....-.++...+|++.++.-..++|...|..+|+.+..+...... +++++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q--itscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ--ITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc--eEEEE
Confidence 7787 5554431 1122333221 111223444667888888888899999999999999999888665 99999
Q ss_pred EC
Q 024185 188 FT 189 (271)
Q Consensus 188 ~~ 189 (271)
|-
T Consensus 261 Fg 262 (310)
T KOG4499|consen 261 FG 262 (310)
T ss_pred ec
Confidence 95
No 410
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.67 E-value=0.2 Score=38.54 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=94.5
Q ss_pred EEEcCCCCEEEEEecCC--eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE
Q 024185 96 VAFDQQGLVFAVAMEAG--AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
+.|..++.++-+.+.-| .|+.+|+.+++. .....+... ----.+.... ++.....=.++...+||..+.+.+.+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~--~~~~~l~~~-~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKV--LQSVPLPPR-YFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSE--EEEEE-TTT---EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcE--EEEEECCcc-ccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence 78877888777777666 799999999874 333344321 1122333332 34444445689999999999999988
Q ss_pred eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC--c---ceeEEEEEecCCcEEEEeC--CeEEE
Q 024185 174 FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN--I---GVVACLKWAPRRAMFVAAS--SVLSF 246 (271)
Q Consensus 174 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~s~~~~~l~~~~--~~v~i 246 (271)
+..... + ..++ .|++.|+.......++++|..+.+....+.-. . ..++.+.|. +|.+.|-.= ..|..
T Consensus 126 ~~y~~E-G--WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPYPGE-G--WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EE-SSS-----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EecCCc-c--eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 876543 2 2355 56777777777779999999887776665322 2 245667876 565555442 66888
Q ss_pred EcCCCCCCCcCC
Q 024185 247 WIPNPSSNSTDE 258 (271)
Q Consensus 247 w~~~~~~~~~~~ 258 (271)
-|+.+|++....
T Consensus 200 Idp~tG~V~~~i 211 (264)
T PF05096_consen 200 IDPETGKVVGWI 211 (264)
T ss_dssp EETTT-BEEEEE
T ss_pred EeCCCCeEEEEE
Confidence 888888765543
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.65 E-value=0.14 Score=44.67 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=91.3
Q ss_pred ceEEEEEecCcceeEEEecC--Cc-ceEEEcCCCCEEEEEecC------CeEEEEeCCCCCCCcceEEEecCCccceEEE
Q 024185 72 LEYGIFVLMLASFQGILRLR--GR-PTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDI 142 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 142 (271)
..+..+|..++......... .. .+++.. ++...++|+.| .++..||..+.+...........+...+.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-- 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-- 377 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--
Confidence 46778888877543333222 22 223433 55777888877 36888999887752221111111111121
Q ss_pred EEcCCCcEEEEEecCC-----eEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCC------cEEEEEcCC
Q 024185 143 KFSNDGKSMLLTTTNN-----NIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDG------TLHAWNINT 211 (271)
Q Consensus 143 ~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~ 211 (271)
.-+|...++|+.|| ++..||.++.+-...-......... -.-.-+|+..++|+.++ ++..||..+
T Consensus 378 --~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 378 --VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred --EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 12678888888875 4777877655432211111111011 11223677778887654 578888877
Q ss_pred ceeEE--EecCCcceeEEEEEecCCcEEEEeC--C-----eEEEEcCCCCCC
Q 024185 212 RNEVA--CWNGNIGVVACLKWAPRRAMFVAAS--S-----VLSFWIPNPSSN 254 (271)
Q Consensus 212 ~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~--~-----~v~iw~~~~~~~ 254 (271)
++-.. .+...... ..++ .-++.+.+.|+ + ++..||+.+.+-
T Consensus 454 ~~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 65433 22211111 1222 23566666665 2 277888877653
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.42 E-value=0.023 Score=30.08 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=25.8
Q ss_pred cceEEEEEcCCC---cEEEEEecCCeEEEEECCC
Q 024185 137 AEVCDIKFSNDG---KSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 137 ~~v~~~~~s~~~---~~l~~~~~d~~i~~~d~~~ 167 (271)
+.+.+++|||+. .+|+.+-.-+.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4788887889999999985
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=96.36 E-value=0.39 Score=41.06 Aligned_cols=178 Identities=5% Similarity=-0.114 Sum_probs=85.1
Q ss_pred hhhhccC-----ceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecC--CeEEEEeCCCCCCCcceEEEecCC
Q 024185 65 LVLLTTA-----LEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEA--GAIKLFDSRSYDKGPFDTFLVGGD 135 (271)
Q Consensus 65 l~s~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~ 135 (271)
++.|+.+ ..+..||..++.....-... ........-++...++|+.+ ..+..||..+++... ...+...
T Consensus 275 yviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~--~~~l~~~ 352 (480)
T PHA02790 275 YLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN--MPSLLKP 352 (480)
T ss_pred EEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEE--CCCCCCC
Confidence 4456543 24667887766533222211 11111223467766777653 368888877654311 1111111
Q ss_pred ccceEEEEEcCCCcEEEEEecC---CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCc
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTN---NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTR 212 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 212 (271)
.... + ...-+|+..+.|+.+ ..+..||.++.+-...-......... ....-+++..+.|+ ...+||..++
T Consensus 353 r~~~-~-~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~--~~~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 353 RCNP-A-VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS--CALVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred Cccc-E-EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc--eEEEECCEEEEECC---ceEEecCCCC
Confidence 1111 1 122357777777754 34778887766533211111110111 12233566666664 4678888765
Q ss_pred eeEE--EecCCcceeEEEEEecCCcEEEEeC-------CeEEEEcCCCCC
Q 024185 213 NEVA--CWNGNIGVVACLKWAPRRAMFVAAS-------SVLSFWIPNPSS 253 (271)
Q Consensus 213 ~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-------~~v~iw~~~~~~ 253 (271)
+-.. .+....... +++ .-++++.+.|+ ..+..||..+++
T Consensus 426 ~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 426 TWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4432 222111111 222 33677777775 247777776653
No 414
>PHA03098 kelch-like protein; Provisional
Probab=96.18 E-value=0.64 Score=40.34 Aligned_cols=143 Identities=9% Similarity=0.029 Sum_probs=68.7
Q ss_pred hhhhccC-----ceEEEEEecCcceeEEE--ecCCcceEEEcCCCCEEEEEecC------CeEEEEeCCCCCCCcceEEE
Q 024185 65 LVLLTTA-----LEYGIFVLMLASFQGIL--RLRGRPTVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFL 131 (271)
Q Consensus 65 l~s~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~ 131 (271)
++.||.+ ..+..||..+++....- +.......+..-+++..+.|+.+ ..+..||..+.+......
T Consensus 346 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-- 423 (534)
T PHA03098 346 YVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-- 423 (534)
T ss_pred EEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--
Confidence 4455544 34667787765533211 11111111222356666666632 468899988766421111
Q ss_pred ecCCccceEEEEEcCCCcEEEEEecC--------CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC--
Q 024185 132 VGGDTAEVCDIKFSNDGKSMLLTTTN--------NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-- 201 (271)
Q Consensus 132 ~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 201 (271)
+....... + +...+++.++.|+.+ ..+..||..+++-...-...........+.+ +++.++.|+.+
T Consensus 424 ~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 499 (534)
T PHA03098 424 LPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYE 499 (534)
T ss_pred CCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCC
Confidence 11111111 1 222356666776642 2388899877654322111111111111222 67777777654
Q ss_pred ---CcEEEEEcCCce
Q 024185 202 ---GTLHAWNINTRN 213 (271)
Q Consensus 202 ---g~i~iwd~~~~~ 213 (271)
+.+.+||..+.+
T Consensus 500 ~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 500 YYINEIEVYDDKTNT 514 (534)
T ss_pred cccceeEEEeCCCCE
Confidence 467888877654
No 415
>PRK13684 Ycf48-like protein; Provisional
Probab=96.14 E-value=0.56 Score=38.01 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=82.5
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG 173 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 173 (271)
..+.+.|++.+++++. .|.+..-.-..++. .... .......+.++.+.++++.++++ ..|.+.+=....++.-..
T Consensus 176 ~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~t--W~~~-~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 176 RNLRRSPDGKYVAVSS-RGNFYSTWEPGQTA--WTPH-QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred EEEEECCCCeEEEEeC-CceEEEEcCCCCCe--EEEe-eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 3477778876665554 56554321111121 1111 12334678999999998876654 467665323333332221
Q ss_pred eecC--CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC-CeEEEE
Q 024185 174 FSLE--PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLSFW 247 (271)
Q Consensus 174 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~~v~iw 247 (271)
.... .....+..+.+.|+++.++++ .+|.+. .....++.-...+ .-......+.|..+++.+++|. |.|.-|
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~ 328 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRY 328 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEe
Confidence 1111 011236778899988765554 456554 3344444433332 2223577888888888888887 888877
Q ss_pred cC
Q 024185 248 IP 249 (271)
Q Consensus 248 ~~ 249 (271)
+-
T Consensus 329 ~~ 330 (334)
T PRK13684 329 VG 330 (334)
T ss_pred cC
Confidence 64
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.46 Score=36.97 Aligned_cols=156 Identities=8% Similarity=0.080 Sum_probs=97.1
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC 172 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 172 (271)
+..+.|+|+.+.|++......-.++=..+++. +....+.+- ...-.+.|..++++.++--.++.+.++.+..+..+.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gdl--irtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL--IRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCce--EEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 66699999999999888777666665566665 445555542 345567888888877777778999988876553221
Q ss_pred E-----ee--cCCC-CCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee---EEEecCC-------cceeEEEEEecCC
Q 024185 173 G-----FS--LEPS-PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE---VACWNGN-------IGVVACLKWAPRR 234 (271)
Q Consensus 173 ~-----~~--~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~-------~~~v~~~~~s~~~ 234 (271)
. +. .... ......++|+|..+.+..+-+-.-+.||.+..... ......+ -..|+++.|.+..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 1 11 1111 23467799999999888888877777776653221 1111111 1346788888754
Q ss_pred c-EEEEeC--CeEEEEcCCC
Q 024185 235 A-MFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 235 ~-~l~~~~--~~v~iw~~~~ 251 (271)
. +|+-+. +.+.-.|...
T Consensus 245 ~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CcEEEEecCCceEEEEecCC
Confidence 4 444443 4444444443
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.08 E-value=0.14 Score=42.41 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=57.0
Q ss_pred ccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE-CCC----------------CC-EEEE
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF-TPD----------------GQ-YVVS 197 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~-~~~----------------~~-~l~~ 197 (271)
...+.++..+|++++.++...-|+|.++|+.++..++.+++..+. .+.=+.. .+. .. +++.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 345788999999998888877899999999999888877765542 1110100 111 11 2334
Q ss_pred ecCCCcEEEEEcCCceeEEEec
Q 024185 198 GSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5567889999998888777664
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.24 Score=41.46 Aligned_cols=149 Identities=11% Similarity=0.133 Sum_probs=87.8
Q ss_pred EEEcCCCCEEEE-EecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCc-------EEEEEecCCeEEEEECCC
Q 024185 96 VAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGK-------SMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 96 ~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~d~~i~~~d~~~ 167 (271)
+-...|.++|+. |+....++-.|++.++. +..+.+ |.. + -+.|.|+.+ .-++|-.+..|.-.|.+-
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkv--veeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~ 546 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKV--VEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA 546 (776)
T ss_pred eeecCCcceEEecCCCcccceeeeccccee--eeEeec--CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccc
Confidence 344445555544 34445677778877775 333333 333 3 567777532 233444455565556543
Q ss_pred -CeEEEEeecCC--CCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-Ce
Q 024185 168 -GEKRCGFSLEP--SPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SV 243 (271)
Q Consensus 168 -~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~ 243 (271)
|..+....... ......+..- ..+-+++.++..|.|++||--.-+....+++....|..+..+.+|+++++.+ ..
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y 625 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY 625 (776)
T ss_pred cCCceeeeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce
Confidence 32222211111 1111222222 2344899999999999999654444455677788899999999999887777 77
Q ss_pred EEEEcCCC
Q 024185 244 LSFWIPNP 251 (271)
Q Consensus 244 v~iw~~~~ 251 (271)
+.+-|+.-
T Consensus 626 llL~d~~i 633 (776)
T COG5167 626 LLLTDVPI 633 (776)
T ss_pred EEEEeccc
Confidence 88888754
No 419
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.01 E-value=0.55 Score=36.83 Aligned_cols=206 Identities=15% Similarity=0.113 Sum_probs=110.5
Q ss_pred eEEeeEEecCCchhhhhhhhhhccCceEEEEEec------Cc-ceeEEEecC-------CcceEEEcCCC----------
Q 024185 47 IRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM------LA-SFQGILRLR-------GRPTVAFDQQG---------- 102 (271)
Q Consensus 47 ~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~~-------~~~~~~~~~~~---------- 102 (271)
.-..++++|.+.. -++....+...+||.. .. ..+-++... ..+-+.|+...
T Consensus 24 N~WGia~~p~~~~-----WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 24 NAWGLSYRPGGPF-----WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccceeEecCCCCE-----EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 3456899998876 5566777889999886 12 223333321 12225554322
Q ss_pred --CEEEEEecCCeEEEEeCCCCCCCcce-EEEecCC-ccce-EEEEEcC--CCcEEEEEe-cCCeEEEEECCCCeEEEE-
Q 024185 103 --LVFAVAMEAGAIKLFDSRSYDKGPFD-TFLVGGD-TAEV-CDIKFSN--DGKSMLLTT-TNNNIYVLDAYGGEKRCG- 173 (271)
Q Consensus 103 --~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~-~~~v-~~~~~s~--~~~~l~~~~-~d~~i~~~d~~~~~~~~~- 173 (271)
..++.+++||+|.-|...-....... ...+... .+.| ..+++.. .+.+|+.+. ..++|.+||-. .+++..
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~ 177 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLP 177 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCC
Confidence 23677889999999986433220001 1222211 2333 3445443 456666654 47899999843 222211
Q ss_pred --eecCCCC-----C---------ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--CCcceeEEEEEec---
Q 024185 174 --FSLEPSP-----N---------TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAP--- 232 (271)
Q Consensus 174 --~~~~~~~-----~---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~--- 232 (271)
+....-+ - .|+-..-.++++.=+.|..-|.|-++|+ .++.++++. +.-..-+.|+..|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhh
Confidence 1111000 0 1111111233333334444578999997 578888773 2223456777766
Q ss_pred ---CCcEEEEe--CCeEEEEcCCCCCCCcCCC
Q 024185 233 ---RRAMFVAA--SSVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 233 ---~~~~l~~~--~~~v~iw~~~~~~~~~~~~ 259 (271)
.|.+|+-- +|+|..||..+++.+....
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 24444432 2889999999887655443
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.01 E-value=0.92 Score=40.21 Aligned_cols=149 Identities=10% Similarity=0.063 Sum_probs=85.5
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCc----ceEEEecC--------------CccceEEEEEcC--CCcEEEEEe
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGP----FDTFLVGG--------------DTAEVCDIKFSN--DGKSMLLTT 155 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~--------------~~~~v~~~~~s~--~~~~l~~~~ 155 (271)
.+.+. .++++++. .+.|.+|+.......+ ...+.... ....|..+.... +...|+.+.
T Consensus 44 talsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~ 121 (717)
T PF08728_consen 44 TALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCT 121 (717)
T ss_pred eEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEe
Confidence 44444 66666655 6789999876533211 00100000 112244444333 456788899
Q ss_pred cCCeEEEEECCC-------C----e---------EEEEeecCCCCCceeeEEEC--CCCCEEEEecCCCcEEEEEcCCc-
Q 024185 156 TNNNIYVLDAYG-------G----E---------KRCGFSLEPSPNTNTEATFT--PDGQYVVSGSGDGTLHAWNINTR- 212 (271)
Q Consensus 156 ~d~~i~~~d~~~-------~----~---------~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~- 212 (271)
.||.|.+|..++ . + +...+... ..+.+++++ ...+++|+++....|.+|-....
T Consensus 122 DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~---~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~ 198 (717)
T PF08728_consen 122 DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG---ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD 198 (717)
T ss_pred cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC---CceeEEEEEecCcceEEEEecCCceEEEEEEeccc
Confidence 999999997521 1 0 11111111 347778888 77888888888888888765432
Q ss_pred -eeEE-EecCCcceeEEEEEecCC---c---EEEEeC--CeEEEEcC
Q 024185 213 -NEVA-CWNGNIGVVACLKWAPRR---A---MFVAAS--SVLSFWIP 249 (271)
Q Consensus 213 -~~~~-~~~~~~~~v~~~~~s~~~---~---~l~~~~--~~v~iw~~ 249 (271)
+... .-..+...|.+++|-++. . .+++++ |.+.+|++
T Consensus 199 ~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 199 ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1111 111245568899998753 2 666676 88777776
No 421
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.87 E-value=0.064 Score=40.40 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=52.0
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCceeEEEe-------c-------CCcceeEEEEEecCCcEEEEeC-CeEEEEcCC
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTRNEVACW-------N-------GNIGVVACLKWAPRRAMFVAAS-SVLSFWIPN 250 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~ 250 (271)
+.+..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ |+.+.|+.+
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 445678899999999999999999988775432 1 2446788999999998777776 888888765
Q ss_pred CC
Q 024185 251 PS 252 (271)
Q Consensus 251 ~~ 252 (271)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 54
No 422
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.49 Score=34.90 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=92.4
Q ss_pred CceEEEEEecCcceeEEEecCC--cceEEEcCCCCEEEE-EecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 71 ALEYGIFVLMLASFQGILRLRG--RPTVAFDQQGLVFAV-AMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 71 dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
...|+.||+.+++.+..-.-.. ...=-...-++++.. .-.+|.-..+|.++.+. +..+.+.+. -.. ...|
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~--lg~~~y~Ge---GWg--Lt~d 139 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE--LGRFSYEGE---GWG--LTSD 139 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh--hcccccCCc---cee--eecC
Confidence 3469999999998765544331 111111122333332 34578888899887664 334444332 222 3446
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEeecCCCC---CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec-----
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN----- 219 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----- 219 (271)
++.|+.++...+++.-|.++.....++...... ..+..+.| -||...|-.-.+..|...|..+|+.+..+.
T Consensus 140 ~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~ 218 (262)
T COG3823 140 DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLL 218 (262)
T ss_pred CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCc
Confidence 666777766667777776655444433222221 12233444 356666666666677777777877765442
Q ss_pred -------CCcceeEEEEEecCC-cEEEEeC
Q 024185 220 -------GNIGVVACLKWAPRR-AMFVAAS 241 (271)
Q Consensus 220 -------~~~~~v~~~~~s~~~-~~l~~~~ 241 (271)
.|..-.+.+++.|++ +++++|-
T Consensus 219 ~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 219 KELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred hhcCccccccccccceeecCcCCeEEEecC
Confidence 234456889999987 5555553
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.81 E-value=0.015 Score=51.44 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=80.7
Q ss_pred CceEEEEEec--CcceeEEEecC-------CcceEEEcC---CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccc
Q 024185 71 ALEYGIFVLM--LASFQGILRLR-------GRPTVAFDQ---QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAE 138 (271)
Q Consensus 71 dg~i~iwd~~--~~~~~~~~~~~-------~~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 138 (271)
-|...+|+++ .|+....+..+ ...-+.|.| +..++..+-.++++++....+... .-+.+|...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~ 226 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQR 226 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCC
Confidence 3567888875 44433333221 122255544 567888888888888877655332 112235443
Q ss_pred eEEE-----------EEcCCCcEEEEEecCCeEEEEECC-----CCeEEEEeecCCCCCceeeEEECCC-------C--C
Q 024185 139 VCDI-----------KFSNDGKSMLLTTTNNNIYVLDAY-----GGEKRCGFSLEPSPNTNTEATFTPD-------G--Q 193 (271)
Q Consensus 139 v~~~-----------~~s~~~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~~~~~~~~v~~~~~~~~-------~--~ 193 (271)
+..+ ..||||+.++.++.||.++.|.+. .-++++..+.|...-.+..+ ++.+ + .
T Consensus 227 ~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~ 305 (1283)
T KOG1916|consen 227 VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWV 305 (1283)
T ss_pred cccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeE
Confidence 3332 379999999999999998888653 33445555555532222222 2211 1 1
Q ss_pred EEEEecC-CCcEEEEEcCCceeE
Q 024185 194 YVVSGSG-DGTLHAWNINTRNEV 215 (271)
Q Consensus 194 ~l~~~~~-dg~i~iwd~~~~~~~ 215 (271)
++++++. +..+++|.....+++
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEEecccCCcceeEeeccchhhh
Confidence 3445544 567999998877776
No 424
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.77 E-value=0.37 Score=36.81 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=79.5
Q ss_pred EEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-C--CeEEEEECCC----CeEEEEeecCCCCCceeeE
Q 024185 114 IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-N--NNIYVLDAYG----GEKRCGFSLEPSPNTNTEA 186 (271)
Q Consensus 114 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~d~~~----~~~~~~~~~~~~~~~v~~~ 186 (271)
-.+||+.+++..++. + ....-+..=.+-|||+++.+|+. + ..+++++..+ ......-..-....+-.+.
T Consensus 48 s~~yD~~tn~~rpl~---v-~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT---V-QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEecc---C-CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 347899887742221 1 12223344467889999998875 2 4578887543 1111110111122344446
Q ss_pred EECCCCCEEEEecCCC-cEEEEEcCC-ceeEEE---ecC-----CcceeEEEEEecCCcEEEEeCCeEEEEcCCCCCCCc
Q 024185 187 TFTPDGQYVVSGSGDG-TLHAWNINT-RNEVAC---WNG-----NIGVVACLKWAPRRAMFVAASSVLSFWIPNPSSNST 256 (271)
Q Consensus 187 ~~~~~~~~l~~~~~dg-~i~iwd~~~-~~~~~~---~~~-----~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~~~~~~~ 256 (271)
..-|||+.++.|+... +..+|.-+. ...... +.. ....-.-+-..|||++++.+...-.|||..+.+...
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVR 203 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEe
Confidence 6678999999988864 345555422 111111 110 111123466789999999998777888998886644
Q ss_pred CC
Q 024185 257 DE 258 (271)
Q Consensus 257 ~~ 258 (271)
+.
T Consensus 204 ~l 205 (243)
T PF07250_consen 204 TL 205 (243)
T ss_pred eC
Confidence 43
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.68 E-value=0.076 Score=28.14 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=25.1
Q ss_pred ceeeEEECCCC---CEEEEecCCCcEEEEEcCC
Q 024185 182 TNTEATFTPDG---QYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 182 ~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 211 (271)
.+.++.|+|+. .+|+.+-..|.+.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47889999854 4888888889999999985
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.12 Score=47.21 Aligned_cols=142 Identities=12% Similarity=0.127 Sum_probs=88.9
Q ss_pred EEEcCCCCEEEEE--ecCCeEEEEeCCCCCCCcceE-EEecCC------ccceEEEEEcCCCc-EEEEEecCCeEEEEEC
Q 024185 96 VAFDQQGLVFAVA--MEAGAIKLFDSRSYDKGPFDT-FLVGGD------TAEVCDIKFSNDGK-SMLLTTTNNNIYVLDA 165 (271)
Q Consensus 96 ~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~-~~~~~~------~~~v~~~~~s~~~~-~l~~~~~d~~i~~~d~ 165 (271)
+...+|+...++. +.+-.|..||+++........ ..+..| .....++.|+|.-. ..+....|+.|++..+
T Consensus 106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~ 185 (1405)
T KOG3630|consen 106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKST 185 (1405)
T ss_pred EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhh
Confidence 5666777655544 333478999997654311111 111111 23456788998533 3456677888888876
Q ss_pred CCCe-EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC----cceeEEEEEecCCcEEEEe
Q 024185 166 YGGE-KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN----IGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 166 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~ 240 (271)
.... ....+. .....++++|+|.|+.++.|-..|++.-|... ++....+.+. ...|.++.|-....+++.-
T Consensus 186 ~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 186 KQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 4322 122222 12348899999999999999999999988753 4433333221 4679999999887777765
Q ss_pred C
Q 024185 241 S 241 (271)
Q Consensus 241 ~ 241 (271)
+
T Consensus 262 ~ 262 (1405)
T KOG3630|consen 262 G 262 (1405)
T ss_pred c
Confidence 4
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.64 E-value=0.31 Score=41.57 Aligned_cols=117 Identities=9% Similarity=0.056 Sum_probs=73.3
Q ss_pred cceEEeeEEecCCchhhhhhhhhhccCceEEEEEec-----CcceeEEE--ecC-Cc----ceEEEcCCCCEEEEEecCC
Q 024185 45 KGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLM-----LASFQGIL--RLR-GR----PTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 45 ~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~--~~~-~~----~~~~~~~~~~~l~~~~~d~ 112 (271)
-..|..++|.|-+..-. ..+++......|.+|.+. +++.+..- +.. .. ..+-|+|....|++-....
T Consensus 56 FEhV~GlsW~P~~~~~~-paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADT-PALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCC-CceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 34688899998754311 015566778899999885 22322221 111 11 2288999999888776555
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec-CCeEEEEEC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT-NNNIYVLDA 165 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~~d~ 165 (271)
.-.++++..... .....++ ..+-|.|.+|.+||+.|+++-. .=.-++||-
T Consensus 135 vSV~~sV~~d~s--rVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 VSVLPSVHCDSS--RVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeEeeeeeeCCc--eEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 545666665443 1133343 4578999999999998876643 345678874
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.60 E-value=0.89 Score=36.11 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=78.4
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECC-CCeEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAY-GGEKR 171 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~ 171 (271)
+..+.-++||++++++....-..-||.-.... .... ......+..+.|+|++.+.++ ...|.++.=+.. ..+.-
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w---~~~~-r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTW---QPHN-RNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE---SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEEE
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCCCccc---eEEc-cCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcccc
Confidence 34467789999888887555555777654332 1222 224578999999999876554 488888887722 22211
Q ss_pred EE--eecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC-CeEE
Q 024185 172 CG--FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLS 245 (271)
Q Consensus 172 ~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~~v~ 245 (271)
.. .......-.+..++|.+++...++|+.. .+ +.....|+.=+.-+ .-.+....+.|.++.+-++.|. |.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll 299 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLL 299 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEE
Confidence 11 1111222347889999998877766654 33 33445555544432 2234578899988888888887 7655
Q ss_pred EE
Q 024185 246 FW 247 (271)
Q Consensus 246 iw 247 (271)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 429
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.59 E-value=0.44 Score=32.47 Aligned_cols=107 Identities=9% Similarity=0.144 Sum_probs=66.9
Q ss_pred EEEcCCCcEEEEEecCCeEEEEECCCC--------eEEEEeecCCCCCceeeEE---ECC--CCCEEEEecCCCcEEEEE
Q 024185 142 IKFSNDGKSMLLTTTNNNIYVLDAYGG--------EKRCGFSLEPSPNTNTEAT---FTP--DGQYVVSGSGDGTLHAWN 208 (271)
Q Consensus 142 ~~~s~~~~~l~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~~dg~i~iwd 208 (271)
-+|......|+.++.-|+|.+++.... ..++.+..... |++++ |.| +...|+.|+. ..+..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~---italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQE---ITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCc---eEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 355666667888888889999986532 23444544443 55554 433 2346666665 4799999
Q ss_pred cCCceeEEEecCCcceeEEEEEec----CCcEEEEeC-CeEEEEcCCCCC
Q 024185 209 INTRNEVACWNGNIGVVACLKWAP----RRAMFVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~-~~v~iw~~~~~~ 253 (271)
+.++..+.-.+-+ ..|+++.+-. +..+++.|+ ..|.-||.+..+
T Consensus 80 V~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 80 VENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 9887776644433 4467776633 345677776 568777766543
No 430
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.58 E-value=1.2 Score=37.53 Aligned_cols=110 Identities=8% Similarity=0.043 Sum_probs=59.5
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceE---EEecCCccceEEEEEcCCC------cEEEEEe-------
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDT---FLVGGDTAEVCDIKFSNDG------KSMLLTT------- 155 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~------~~l~~~~------- 155 (271)
..+.++|.||++.|++--..|.|++++..+........ .......+....|+++|+- .+|+...
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 35669999999876666546999999865543211110 1111135778999999875 2344332
Q ss_pred ---cCCeEEEEECCCC--e---EEEEeecC--CCCCceeeEEECCCCCEEEEecCC
Q 024185 156 ---TNNNIYVLDAYGG--E---KRCGFSLE--PSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 156 ---~d~~i~~~d~~~~--~---~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
....|.-|.+... . ....+... .....-..+.|.|||++.++.++.
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544554321 1 11112111 001123458899999877755543
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.53 E-value=1.1 Score=36.81 Aligned_cols=143 Identities=13% Similarity=0.091 Sum_probs=72.7
Q ss_pred EEeeEEecCCchhhhhhhhhh-----------ccCc-eEEEEEecC--cce--eEEEec-C-CcceEEEcCCCCEEEEEe
Q 024185 48 RRGLFLSACLQLMIALCLVLL-----------TTAL-EYGIFVLML--ASF--QGILRL-R-GRPTVAFDQQGLVFAVAM 109 (271)
Q Consensus 48 v~~~~~s~~~~~~~~~~l~s~-----------~~dg-~i~iwd~~~--~~~--~~~~~~-~-~~~~~~~~~~~~~l~~~~ 109 (271)
...+++.++|+.. ++- ...+ .|.+++-.+ |+. ...+.. - ....+++.+++ |+++.
T Consensus 16 P~~ia~d~~G~l~-----V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~ 88 (367)
T TIGR02604 16 PIAVCFDERGRLW-----VAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT 88 (367)
T ss_pred CceeeECCCCCEE-----EEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC
Confidence 3347788888762 222 1223 676665432 332 223322 2 23458888888 44444
Q ss_pred cCCeEEEE-eCCCCC-CC-cce-EE-EecC----CccceEEEEEcCCCcEEEEEec-------------------CCeEE
Q 024185 110 EAGAIKLF-DSRSYD-KG-PFD-TF-LVGG----DTAEVCDIKFSNDGKSMLLTTT-------------------NNNIY 161 (271)
Q Consensus 110 ~d~~i~i~-d~~~~~-~~-~~~-~~-~~~~----~~~~v~~~~~s~~~~~l~~~~~-------------------d~~i~ 161 (271)
.. .|..+ |..... .. ... .. .+.. +......++|.|||.+.++-+. .|.+.
T Consensus 89 ~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 34 45444 553321 10 011 11 1211 1344778999999987665442 14456
Q ss_pred EEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC
Q 024185 162 VLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD 201 (271)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 201 (271)
-+|..+++....-.+. .....++|+|+|+++++-..+
T Consensus 168 r~~pdg~~~e~~a~G~---rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLRVVAHGF---QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEEEEecCc---CCCccceECCCCCEEEEccCC
Confidence 6665544432221222 225569999999987765433
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.2 Score=45.93 Aligned_cols=144 Identities=12% Similarity=0.009 Sum_probs=88.7
Q ss_pred ceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcce-----eEEEecC--------CcceEEEcCCC-CEEEEEecC
Q 024185 46 GIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASF-----QGILRLR--------GRPTVAFDQQG-LVFAVAMEA 111 (271)
Q Consensus 46 ~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~--------~~~~~~~~~~~-~~l~~~~~d 111 (271)
-.+..+...+|+...++ +..+.+..|..||+++-.. ..-+..+ -..++.|+|.- ...++...|
T Consensus 101 ~pi~~~v~~~D~t~s~v---~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~d 177 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVV---VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSD 177 (1405)
T ss_pred ccceEEEeccCCceEEE---EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccc
Confidence 34555666677665322 2344466888999975321 1111111 13347888864 245666778
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCC--CCceeeEEEC
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPS--PNTNTEATFT 189 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~~ 189 (271)
+.|++..+..... ....+ .-....++++|+|.|+.+++|-..|++.-|.. +.+....+..... ...|.+++|-
T Consensus 178 lsl~V~~~~~~~~---~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQ---NVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred cchhhhhhhhhhh---hhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence 8888887654332 11111 23457899999999999999999999999874 3444444332211 2568999998
Q ss_pred CCCCEEEE
Q 024185 190 PDGQYVVS 197 (271)
Q Consensus 190 ~~~~~l~~ 197 (271)
....++++
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 77777664
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.24 E-value=0.0021 Score=52.62 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=96.8
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE-EecCCeEEEEECCCCeEEEEe
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~ 174 (271)
..|-|.+.-++.++.+..+..||-.... ... ...++....++|..++..++. +-..+.+.+||+.+... +.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~-----~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQV-----ILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcce-----ecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 7788888778988888899999965433 111 123466778888888776654 45578999999865432 222
Q ss_pred ecC-CCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEe
Q 024185 175 SLE-PSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAA 240 (271)
Q Consensus 175 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 240 (271)
... ...... +.|++....++.+...|.+.|++..+.+.+...-.|...+++++|.+.+..+...
T Consensus 113 E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 211 111112 7899999999999889999999988777766665588889999999987655544
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.24 E-value=0.78 Score=41.09 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=52.0
Q ss_pred cceEEEEEcCCCcEEEEEecCCeEEEEECCC----------CeE---EEEeec------CCCCCceeeEEECCC---CCE
Q 024185 137 AEVCDIKFSNDGKSMLLTTTNNNIYVLDAYG----------GEK---RCGFSL------EPSPNTNTEATFTPD---GQY 194 (271)
Q Consensus 137 ~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~----------~~~---~~~~~~------~~~~~~v~~~~~~~~---~~~ 194 (271)
-.|..+..+|+|++++..+..| |.|..+.. |+. .+++.. ......|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999888765 44444421 111 111111 112246888999997 478
Q ss_pred EEEecCCCcEEEEEcCCce
Q 024185 195 VVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 195 l~~~~~dg~i~iwd~~~~~ 213 (271)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888999999999997533
No 435
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.18 E-value=1.8 Score=37.06 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=76.1
Q ss_pred cCceEEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-cceEEEEEcC
Q 024185 70 TALEYGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEVCDIKFSN 146 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~s~ 146 (271)
..+...+.|. +|.....+....... +...++|.+++... ..+..+|..... .....+.+.. ..=+.+..-|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v---~~~~~l~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV---IWEYDLPGGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E---EEEEE--TTEE-B-S-EEE-T
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE---EEeeecCCcccccccccEECC
Confidence 4555666666 455555555443333 66788998776555 788888886432 3344444321 1235677889
Q ss_pred CCcEEEEEec-------------CCeEEEEECCCCeEEEEeecCCC-------------------------CCceeeEEE
Q 024185 147 DGKSMLLTTT-------------NNNIYVLDAYGGEKRCGFSLEPS-------------------------PNTNTEATF 188 (271)
Q Consensus 147 ~~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~~~~-------------------------~~~v~~~~~ 188 (271)
+|++|+.+.. .-.|..+| .+|+.+..+..... -..+.++.+
T Consensus 200 nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 200 NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 9999887772 22466666 67776655332110 034778899
Q ss_pred CC-CCCEEEEecCCCcEEEEEcCCceeEEEecCC
Q 024185 189 TP-DGQYVVSGSGDGTLHAWNINTRNEVACWNGN 221 (271)
Q Consensus 189 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 221 (271)
.+ ++.+++++-.-..|...|.++++....+..+
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 88 5666666655668889998899888877554
No 436
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.18 E-value=0.2 Score=41.28 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=92.6
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe-cC-CccceE-EEEEcCCCcEEEEEecCCeEEEE-ECCCCe
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV-GG-DTAEVC-DIKFSNDGKSMLLTTTNNNIYVL-DAYGGE 169 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~-~~~~v~-~~~~s~~~~~l~~~~~d~~i~~~-d~~~~~ 169 (271)
..+-..|||+.++.-+. .++.++++.+......+.... .+ ....|+ .+..-..|..+++++.||-|.-| |.+.+.
T Consensus 224 ~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~ 302 (733)
T COG4590 224 SQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDG 302 (733)
T ss_pred HhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCC
Confidence 34778899998887764 688889887765421111111 01 001122 22233456778889999988876 554322
Q ss_pred E-----EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-Ce
Q 024185 170 K-----RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS-SV 243 (271)
Q Consensus 170 ~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~ 243 (271)
. ++.++....+ +..+.-..+.+-+++-..+|++..+.....+.+-.-.. -..+.-+++||++.++++-. |.
T Consensus 303 ~p~l~h~R~f~l~pa~--~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e~~gk 379 (733)
T COG4590 303 QPHLNHIRNFKLAPAE--VQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAYLLSEDQGK 379 (733)
T ss_pred CCcceeeeccccCccc--ceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCcccchheeecCCc
Confidence 1 2222222222 22222223345567777788888776544433322222 22467789999999999887 99
Q ss_pred EEEEcCCCCCCC
Q 024185 244 LSFWIPNPSSNS 255 (271)
Q Consensus 244 v~iw~~~~~~~~ 255 (271)
++++.+++..+.
T Consensus 380 i~~~~l~Nr~Pe 391 (733)
T COG4590 380 IRLAQLENRNPE 391 (733)
T ss_pred eEEEEecCCCCC
Confidence 999999876543
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.14 E-value=0.78 Score=37.13 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=54.5
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEE--EecCCccceEEEEEcCC----CcEEEEEecC--------C
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTF--LVGGDTAEVCDIKFSND----GKSMLLTTTN--------N 158 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~----~~~l~~~~~d--------~ 158 (271)
...++|.|||+.++ +...|.|++++.......++... ...........++++|+ +...++.+.. .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 35699999987655 56699999999332221111111 11234467899999994 3333333321 2
Q ss_pred eEEEEECCCC-------eEE-EEeec-CCCCCceeeEEECCCCCEEEEecC
Q 024185 159 NIYVLDAYGG-------EKR-CGFSL-EPSPNTNTEATFTPDGQYVVSGSG 200 (271)
Q Consensus 159 ~i~~~d~~~~-------~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 200 (271)
.|.-|....+ +.+ ..+.. ......-..+.|.|||.+.++.+.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 3444544333 111 11222 011123566999999976666544
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=1.2 Score=37.78 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEEC---------CCCeEE---EEeec------CCCCCceeeEEECCCC---CEEE
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDA---------YGGEKR---CGFSL------EPSPNTNTEATFTPDG---QYVV 196 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~---------~~~~~~---~~~~~------~~~~~~v~~~~~~~~~---~~l~ 196 (271)
.|..+..++.|..++..+.+|.+.++=- ++|+.. +++.. ....-.+..++|+|++ ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 5778889999999999998886554421 223221 11111 1111346678999985 5677
Q ss_pred EecCCCcEEEEEcCCceeEEEec
Q 024185 197 SGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 197 ~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
.-+.|+.|++||+...+.+....
T Consensus 185 iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEecCcEEEEEecCCcchhhccC
Confidence 77889999999998877766543
No 439
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.92 E-value=1.5 Score=34.72 Aligned_cols=167 Identities=11% Similarity=0.168 Sum_probs=88.1
Q ss_pred ceEEEEEecCcceeEEEecCC--------cceEEEcCCC-----CEEEEEe-cCCeEEEEeCCCCCC----------Cc-
Q 024185 72 LEYGIFVLMLASFQGILRLRG--------RPTVAFDQQG-----LVFAVAM-EAGAIKLFDSRSYDK----------GP- 126 (271)
Q Consensus 72 g~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~-----~~l~~~~-~d~~i~i~d~~~~~~----------~~- 126 (271)
-++..||+.+++.++++..+. ...+.+.... .+.+.+. ..+.|.++|+.+++. .|
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 468889999999888875442 1225554421 3444443 335899999988653 00
Q ss_pred ceEEEecC----CccceEEEEEcC---CCcEEEEEecCCeEEEEECC-----CCe---------EEEEeecCCCCCceee
Q 024185 127 FDTFLVGG----DTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAY-----GGE---------KRCGFSLEPSPNTNTE 185 (271)
Q Consensus 127 ~~~~~~~~----~~~~v~~~~~s~---~~~~l~~~~~d~~i~~~d~~-----~~~---------~~~~~~~~~~~~~v~~ 185 (271)
...+...+ ..+.+..++.+| +++.|+.....+ -++|.+. +.. .+..+.... .....
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g 190 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG--SQSDG 190 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SECE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccC--CCCce
Confidence 00111100 012366666665 666776665433 2233322 111 112221111 12556
Q ss_pred EEECCCCCEEEEecCCCcEEEEEcCCc---eeEEEe--cCC-cceeEEEEEec--CCcEEEEeC
Q 024185 186 ATFTPDGQYVVSGSGDGTLHAWNINTR---NEVACW--NGN-IGVVACLKWAP--RRAMFVAAS 241 (271)
Q Consensus 186 ~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~--~~~-~~~v~~~~~s~--~~~~l~~~~ 241 (271)
++++++|..+++--..+.|..|+..+. +....+ ... -..+.++.+.+ +|.+.+.++
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 889999998888888999999998761 112222 222 35778999999 887666654
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.86 E-value=0.42 Score=36.05 Aligned_cols=75 Identities=9% Similarity=0.172 Sum_probs=51.0
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcce--EEE-ec-------CCccceEEEEEcCCCcEEEEEecCCeEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFD--TFL-VG-------GDTAEVCDIKFSNDGKSMLLTTTNNNIYVL 163 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~-~~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~ 163 (271)
+++.+..+++++++-+.+|.+++||+.+.+..... ... +. .....|..+..+.+|.-+++-+ +|..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 34556678899999999999999999987641100 000 11 2446788888888887766655 5778888
Q ss_pred ECCCCe
Q 024185 164 DAYGGE 169 (271)
Q Consensus 164 d~~~~~ 169 (271)
|..-+.
T Consensus 93 ~~~L~~ 98 (219)
T PF07569_consen 93 SPDLGC 98 (219)
T ss_pred ccccce
Confidence 865443
No 441
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.84 E-value=2.3 Score=39.09 Aligned_cols=110 Identities=18% Similarity=0.112 Sum_probs=68.8
Q ss_pred EEEEeeecceeEEeeecceeeEEEEeeccceeeEEEEEc--ccccceEEeeEEecCC---chhhhhhhhhhccCceEEEE
Q 024185 3 LIVFALPITQALLFARQNIILILLESLCGIYQCMIIEFF--ATSKGIRRGLFLSACL---QLMIALCLVLLTTALEYGIF 77 (271)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~---~~~~~~~l~s~~~dg~i~iw 77 (271)
-|+.+--....++++++++.++.+....+. ...+++ ..-+..+.|+++.++. +.--. ++.++.|+.+++.
T Consensus 541 ~Iv~~avnr~qiVvalSngelvyfe~d~sg---ql~E~~er~tl~~~vac~ai~~~~~g~krsrf--la~a~~d~~vrii 615 (1205)
T KOG1898|consen 541 RIVKCAVNRRQIVVALSNGELVYFEGDVSG---QLNEFTERVTLSTDVACLAIGQDPEGEKRSRF--LALASVDNMVRII 615 (1205)
T ss_pred EEEEEeecceEEEEEccCCeEEEEEeccCc---cceeeeeeeeeceeehhhccCCCCcchhhcce--eeeeccccceeEE
Confidence 345555555677788889998887764221 222223 2234578888888776 22112 7788999999999
Q ss_pred EecCcceeEEEecCCcce-------EEEcCCCC------EEEEEecCCeEEEE
Q 024185 78 VLMLASFQGILRLRGRPT-------VAFDQQGL------VFAVAMEAGAIKLF 117 (271)
Q Consensus 78 d~~~~~~~~~~~~~~~~~-------~~~~~~~~------~l~~~~~d~~i~i~ 117 (271)
.+.....+..+...++.+ +....++. +|.+|-.+|.+.-.
T Consensus 616 sL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 616 SLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred EecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 998777777775543221 34444442 56677778866544
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=94.81 E-value=1.9 Score=36.95 Aligned_cols=139 Identities=8% Similarity=-0.074 Sum_probs=64.9
Q ss_pred hhhhccC--ceEEEEEecCcceeEEEecC--CcceEEEcCCCCEEEEEecCC---eEEEEeCCCCCCCcceEEEecCCcc
Q 024185 65 LVLLTTA--LEYGIFVLMLASFQGILRLR--GRPTVAFDQQGLVFAVAMEAG---AIKLFDSRSYDKGPFDTFLVGGDTA 137 (271)
Q Consensus 65 l~s~~~d--g~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~ 137 (271)
.+.|+.+ ..+..||..+++....-+.. ........-+|+..+.|+.++ .+..||.++.+...... +.....
T Consensus 322 YviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--m~~~r~ 399 (480)
T PHA02790 322 YVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--TYYPHY 399 (480)
T ss_pred EEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC--CCCccc
Confidence 4456543 35677887655432211111 111122233677777776543 47788987765411111 111111
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCC-----CcEEEEEcCCc
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD-----GTLHAWNINTR 212 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 212 (271)
.. ++ ..-+++..+.|+ .+..||.++++-...-......... +++ .-+++..+.|+.+ ..+..||..++
T Consensus 400 ~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 400 KS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 11 22 233566556653 4678888766543221111111112 122 2366777777754 24556666544
No 443
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.73 E-value=0.46 Score=34.37 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=24.2
Q ss_pred ceEEEEEcCCC------cEEEEEecCCeEEEEECCC
Q 024185 138 EVCDIKFSNDG------KSMLLTTTNNNIYVLDAYG 167 (271)
Q Consensus 138 ~v~~~~~s~~~------~~l~~~~~d~~i~~~d~~~ 167 (271)
.+..++|||.| -.|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999953 3678888999999998653
No 444
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.61 E-value=1.7 Score=35.25 Aligned_cols=102 Identities=15% Similarity=0.264 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE---EEEee--cCCCCCceeeEEECCC----CCEEEEecCC-------
Q 024185 138 EVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RCGFS--LEPSPNTNTEATFTPD----GQYVVSGSGD------- 201 (271)
Q Consensus 138 ~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~--~~~~~~~v~~~~~~~~----~~~l~~~~~d------- 201 (271)
..+.|+|.|||+.++ +...|.|++++ ..+.. +..+. ..........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987655 56699999999 55544 22221 1112245788999995 3333333311
Q ss_pred -CcEEEEEcCCc-------eeE-EEecC---CcceeEEEEEecCCcEEEEeC
Q 024185 202 -GTLHAWNINTR-------NEV-ACWNG---NIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 202 -g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~s~~~~~l~~~~ 241 (271)
..|.-|....+ +.+ ..+.. ....-..|.|.|||.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 24544544433 111 12222 122346799999998666654
No 445
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.54 E-value=0.24 Score=25.94 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=28.2
Q ss_pred CCCCEEEEecC-CCcEEEEEcCCceeEEEecCCcceeEEEEE
Q 024185 190 PDGQYVVSGSG-DGTLHAWNINTRNEVACWNGNIGVVACLKW 230 (271)
Q Consensus 190 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 230 (271)
|++++++++.. +++|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 67777776654 789999999998888877653 22344544
No 446
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.53 E-value=3.9 Score=37.78 Aligned_cols=172 Identities=12% Similarity=0.061 Sum_probs=96.7
Q ss_pred eEEEEEecCcceeEEEecCC------cceEEEcCCCC--EEEEEec-----------CCeEEEEeCCCCCCCcceEEEec
Q 024185 73 EYGIFVLMLASFQGILRLRG------RPTVAFDQQGL--VFAVAME-----------AGAIKLFDSRSYDKGPFDTFLVG 133 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~--~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~ 133 (271)
.|+++|..+++.+..+.... +..+.|+..+. +++++.. +|.++.|+.-.... ...+-
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~----~lell 929 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD----KLELL 929 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc----eeeee
Confidence 58888988887666654331 23355654332 3444421 34577777643322 11111
Q ss_pred ---CCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEE--EEE
Q 024185 134 ---GDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLH--AWN 208 (271)
Q Consensus 134 ---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~--iwd 208 (271)
.-.+.+ .+..|-..++++| ....+++||+...++++......-+..|..+++. +..++.|....++. .|+
T Consensus 930 h~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 930 HKTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred eccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEe
Confidence 112233 3556755555544 4568999999988887776655545557667664 55677776654444 455
Q ss_pred cCCceeEEEec-CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 209 INTRNEVACWN-GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 209 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
...++.+.-.. .-...|+++.+- |...+|.++ |.+.+-.+.....
T Consensus 1005 ~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred cCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcch
Confidence 44444433222 123456666655 455677777 7777776655443
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.48 E-value=1.5 Score=32.70 Aligned_cols=103 Identities=15% Similarity=0.262 Sum_probs=63.3
Q ss_pred cEEEEEecCCeEEEEECCC--CeEEEEeecCCCCCceeeEEECCCCCEEEEecCC---C---cEEEE---EcC--CceeE
Q 024185 149 KSMLLTTTNNNIYVLDAYG--GEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGD---G---TLHAW---NIN--TRNEV 215 (271)
Q Consensus 149 ~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw---d~~--~~~~~ 215 (271)
+.|+.+.....|.+|++.+ .+...+|..- +.|..+.++..|+|+++--.+ . .+++| ... ...++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 3444445567899999883 3445555433 338899999999999986432 2 45665 211 11121
Q ss_pred E-EecCC---------------------cceeEEEEEec-CCcEEEEeCCeEEEEcCCCCCC
Q 024185 216 A-CWNGN---------------------IGVVACLKWAP-RRAMFVAASSVLSFWIPNPSSN 254 (271)
Q Consensus 216 ~-~~~~~---------------------~~~v~~~~~s~-~~~~l~~~~~~v~iw~~~~~~~ 254 (271)
. .+.|| ..++.+++..| .|++++.+.+.+.+|.+.....
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI 167 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence 1 22221 23456777766 5777777779999998876554
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.42 E-value=1.4 Score=39.08 Aligned_cols=106 Identities=12% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCCEEEEEecCCeEEEEeCCC-------C-----------CCCcceEEEecCCccceEEEEEc--CCCcEEEEEecCCeE
Q 024185 101 QGLVFAVAMEAGAIKLFDSRS-------Y-----------DKGPFDTFLVGGDTAEVCDIKFS--NDGKSMLLTTTNNNI 160 (271)
Q Consensus 101 ~~~~l~~~~~d~~i~i~d~~~-------~-----------~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i 160 (271)
+...|+.+.+||.|.+|.+++ . ...|..... -...+..++++ ...+++|+++....|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcceEEEEecCCceE
Confidence 446888999999999997521 1 011222222 23478889998 778888888888888
Q ss_pred EEEECCCC-eEEEEeecCCCCCceeeEEECCCC-----C-EEEEecCCCcEEEEEc
Q 024185 161 YVLDAYGG-EKRCGFSLEPSPNTNTEATFTPDG-----Q-YVVSGSGDGTLHAWNI 209 (271)
Q Consensus 161 ~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----~-~l~~~~~dg~i~iwd~ 209 (271)
.||-.... +.......+.....|.+++|-++. . ++++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88765432 111111112223448889886543 2 7778888999999887
No 449
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.41 E-value=2.6 Score=35.24 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=86.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcC-----CCcEEEEEecCCeEEEEECCC--Ce-----
Q 024185 102 GLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSN-----DGKSMLLTTTNNNIYVLDAYG--GE----- 169 (271)
Q Consensus 102 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~~~--~~----- 169 (271)
...|++|+.+|.++||+.......+....--..-..+|..+..-+ +...||+ -.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999999765533222222222346777776432 2234444 4456788887721 11
Q ss_pred --EEEEeecCCCCCceeeEEECC----C-CCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC-
Q 024185 170 --KRCGFSLEPSPNTNTEATFTP----D-GQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS- 241 (271)
Q Consensus 170 --~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 241 (271)
.+.....|.-+....+++.-| . ..++..-+.||.+.+++-+.-.....++. .--...+.+.|.-..+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 112222232222233344433 2 35777889999999999765444444443 22224577888777777776
Q ss_pred -CeEEEEcCCC
Q 024185 242 -SVLSFWIPNP 251 (271)
Q Consensus 242 -~~v~iw~~~~ 251 (271)
..+.-|....
T Consensus 195 s~~l~~Yky~~ 205 (418)
T PF14727_consen 195 SWTLECYKYQD 205 (418)
T ss_pred ceeEEEecHHH
Confidence 5677776533
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=1.4 Score=37.24 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=47.6
Q ss_pred eeeEEECCCCCEEEEecCCCcEEEEE---------cCCceeEEE---e--------cCCcceeEEEEEecCC----cEEE
Q 024185 183 NTEATFTPDGQYVVSGSGDGTLHAWN---------INTRNEVAC---W--------NGNIGVVACLKWAPRR----AMFV 238 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~dg~i~iwd---------~~~~~~~~~---~--------~~~~~~v~~~~~s~~~----~~l~ 238 (271)
|..+..++.|..++..+.+|.+.++= ++.|+.... + ....-.+...+|+|+. .+++
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 56677889999999888888654432 123432211 1 1112246788999975 3444
Q ss_pred EeC-CeEEEEcCCCCCCCcCC
Q 024185 239 AAS-SVLSFWIPNPSSNSTDE 258 (271)
Q Consensus 239 ~~~-~~v~iw~~~~~~~~~~~ 258 (271)
-.+ +.+|+||....+..-..
T Consensus 186 L~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EecCcEEEEEecCCcchhhcc
Confidence 444 88999999876655333
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.12 E-value=0.24 Score=44.37 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=81.4
Q ss_pred CCeEEEEeCCC--CCCCcceEEE-ecCCccceEEEEEcC---CCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC----
Q 024185 111 AGAIKLFDSRS--YDKGPFDTFL-VGGDTAEVCDIKFSN---DGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP---- 180 (271)
Q Consensus 111 d~~i~i~d~~~--~~~~~~~~~~-~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---- 180 (271)
-|.+.+||+.- ++..+..... .......+.-+.|.| +.-++..+-.++.+++.+...... ..+..|...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 36788898753 3332221211 122223445555655 556666777788888776543221 222333321
Q ss_pred -----CceeeEEECCCCCEEEEecCCCcEEEEEc-----CCceeEEEecCCcc-eeEEEEEecCC---------cEEEEe
Q 024185 181 -----NTNTEATFTPDGQYVVSGSGDGTLHAWNI-----NTRNEVACWNGNIG-VVACLKWAPRR---------AMFVAA 240 (271)
Q Consensus 181 -----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-----~~~~~~~~~~~~~~-~v~~~~~s~~~---------~~l~~~ 240 (271)
+.+.--..+|||+.+++++.||.++.|.+ ....+++.++.|.+ +-.|.-++.+. .+++++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence 11111347999999999999998887765 33455666777763 32232243321 245555
Q ss_pred C---CeEEEEcCCCCCCC
Q 024185 241 S---SVLSFWIPNPSSNS 255 (271)
Q Consensus 241 ~---~~v~iw~~~~~~~~ 255 (271)
+ ..+++|.....++.
T Consensus 311 td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 311 TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCcceeEeeccchhhh
Confidence 4 45999998887776
No 452
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.11 E-value=2.3 Score=38.27 Aligned_cols=69 Identities=12% Similarity=0.228 Sum_probs=45.3
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcCC----------cee--E-EEe--------cCCcceeEEEEEecCC---c-E
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNINT----------RNE--V-ACW--------NGNIGVVACLKWAPRR---A-M 236 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~--~-~~~--------~~~~~~v~~~~~s~~~---~-~ 236 (271)
.|..+.++|+|++++..|..| |.|..+.. ++. . ..+ ..+...|..+.|+|.+ . +
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 477889999999999888765 44444431 111 1 111 2344578999999964 3 4
Q ss_pred EEEeC-CeEEEEcCCC
Q 024185 237 FVAAS-SVLSFWIPNP 251 (271)
Q Consensus 237 l~~~~-~~v~iw~~~~ 251 (271)
++-.+ +.+|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 44344 9999999964
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=3.1 Score=36.86 Aligned_cols=183 Identities=10% Similarity=0.134 Sum_probs=89.7
Q ss_pred cCceEEEEEecCcceeEEEe-cC-CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCC
Q 024185 70 TALEYGIFVLMLASFQGILR-LR-GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSND 147 (271)
Q Consensus 70 ~dg~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 147 (271)
..-.|+||+. +|+.+..+. .| ..-.+.|+.+.. |++...+|++++|++......+. ..-.......|..+.+..+
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHN 138 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecC
Confidence 4456888888 566555543 23 333488887766 55667799999999876553221 0111223345666666666
Q ss_pred CcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE---CCCCC--EEEEec-CCCcEEEEEcCCce-eEEEecC
Q 024185 148 GKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF---TPDGQ--YVVSGS-GDGTLHAWNINTRN-EVACWNG 220 (271)
Q Consensus 148 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~--~l~~~~-~dg~i~iwd~~~~~-~~~~~~~ 220 (271)
|-.++ ..+|++.+-+-.....++++..-... ....-+| .|..+ .++-.. ..+ ..++...+.. ....+..
T Consensus 139 GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~-~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 139 GVAVL--TVSGQVILINGVEEPKLRKMPDIPYN-ELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW 214 (829)
T ss_pred ceEEE--ecCCcEEEEcCCCcchhhhCCCCCCc-cCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC
Confidence 64333 44455554432222223333221110 0111222 22111 111111 000 1111111111 1122222
Q ss_pred CcceeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC
Q 024185 221 NIGVVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 221 ~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~ 259 (271)
..+.+..+..||+.++|+--. |.+.+-+.+..+..-+..
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 235678899999999877554 888887777766555444
No 454
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.93 E-value=2.2 Score=32.69 Aligned_cols=144 Identities=14% Similarity=0.090 Sum_probs=78.6
Q ss_pred EEEEEecCcceeEEEecCCcce--EEEcCCCCEEEEEecC---CeEEEEeCCC--CCCCcceEE-EecCCccceEEEEEc
Q 024185 74 YGIFVLMLASFQGILRLRGRPT--VAFDQQGLVFAVAMEA---GAIKLFDSRS--YDKGPFDTF-LVGGDTAEVCDIKFS 145 (271)
Q Consensus 74 i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d---~~i~i~d~~~--~~~~~~~~~-~~~~~~~~v~~~~~s 145 (271)
-.+||+.+++....--.....| -++-+||+++.+|+.. ..+++++... ......... .+. ....-....--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 4589998876533222233344 4677899999988642 3577887654 111000000 011 11222334456
Q ss_pred CCCcEEEEEecCC-eEEEEECCC-CeEEEE--eec----CCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEE
Q 024185 146 NDGKSMLLTTTNN-NIYVLDAYG-GEKRCG--FSL----EPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 146 ~~~~~l~~~~~d~-~i~~~d~~~-~~~~~~--~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
|||+.|+.|+.+. +..+|.-+. ...... +.. ......--.+...|||+.++.+..+ -.|||..+++.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 7899999888753 345555321 111111 111 1111112336778999999888865 45679888877776
Q ss_pred ecC
Q 024185 218 WNG 220 (271)
Q Consensus 218 ~~~ 220 (271)
++.
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 643
No 455
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=93.89 E-value=0.9 Score=40.49 Aligned_cols=144 Identities=10% Similarity=0.035 Sum_probs=82.6
Q ss_pred eEEeeecceeeEEEEeeccceeeEEEEEcccccceEEeeEEecCCchhhhhhhhhhccCceEEE--------EEecCcce
Q 024185 13 ALLFARQNIILILLESLCGIYQCMIIEFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGI--------FVLMLASF 84 (271)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~i--------wd~~~~~~ 84 (271)
.+..+.+.+.+.+.....+.......+.+......+.++.+++..-. .|.-||++-. ||.+ +
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slg-------agl~dgt~a~y~rap~gSwd~e---p 618 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLG-------AGLIDGTLAVYGRAPSGSWDGE---P 618 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccc-------cCccCCccccccCCCCCCCCCC---C
Confidence 34556666777666666444444555556666677777777665433 4445555444 4433 1
Q ss_pred eEEEecC--CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEe---cCCccceEEEEEcCCCcEEEEEecCCe
Q 024185 85 QGILRLR--GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLV---GGDTAEVCDIKFSNDGKSMLLTTTNNN 159 (271)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~ 159 (271)
...+... .+...++..| ++.++.+|.|.++...+... ...+ ..|...|+++.+..+|-+++.++.| .
T Consensus 619 ~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~----~~~leahqee~~~Vthm~~~~~gVwvafasG~-~ 690 (925)
T KOG3522|consen 619 NISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIR----SWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-E 690 (925)
T ss_pred ccccccCCccccchhhhhc---eeeeecCCceEEEechhccc----cchhHHHHhhcceEEEEEeeCCceEEEEcCCC-E
Confidence 1121211 2233444322 55667789999999877554 2222 2345679999999888777776655 5
Q ss_pred EEEEECCCCeEEEEe
Q 024185 160 IYVLDAYGGEKRCGF 174 (271)
Q Consensus 160 i~~~d~~~~~~~~~~ 174 (271)
+++++.++-.-...+
T Consensus 691 ~rlfhtetl~hlqd~ 705 (925)
T KOG3522|consen 691 ERLFHTETLWHLQDS 705 (925)
T ss_pred EEEecccccCCcccc
Confidence 666665554433333
No 456
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=2.7 Score=33.00 Aligned_cols=140 Identities=10% Similarity=0.037 Sum_probs=85.0
Q ss_pred hhccCceEEEEEecCccee---EEEecCCcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE
Q 024185 67 LLTTALEYGIFVLMLASFQ---GILRLRGRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK 143 (271)
Q Consensus 67 s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (271)
.+..+.-+++.|+.+...- ..+... ...-.|.-.|++.+++..+.-+.+.|+.+.+. |...-++......-..++
T Consensus 101 vad~ssGL~IvDIS~P~sP~~~~~lnt~-gyaygv~vsGn~aYVadlddgfLivdvsdpss-P~lagrya~~~~d~~~v~ 178 (370)
T COG5276 101 VADWSSGLRIVDISTPDSPTLIGFLNTD-GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS-PQLAGRYALPGGDTHDVA 178 (370)
T ss_pred EEcCCCceEEEeccCCCCcceeccccCC-ceEEEEEecCCEEEEeeccCcEEEEECCCCCC-ceeeeeeccCCCCceeEE
Confidence 4456667899998765432 222322 23345555788888888677788899988763 333444444444445666
Q ss_pred EcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCC-ceeeEEECCCCCEEEEecCCCcEEEEEcCCce
Q 024185 144 FSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPN-TNTEATFTPDGQYVVSGSGDGTLHAWNINTRN 213 (271)
Q Consensus 144 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 213 (271)
.| |++...+..|+-+.+-|+.+..... +.++.+.. .+.++..+++..+++...+ -+.+-|..+.+
T Consensus 179 IS--Gn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~s 244 (370)
T COG5276 179 IS--GNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPS 244 (370)
T ss_pred Ee--cCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCC
Confidence 66 6677777789999999997654322 22222221 4777777777666554433 35566655544
No 457
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.74 E-value=0.53 Score=39.08 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=54.0
Q ss_pred CceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEec------C--------------CcEEEE-
Q 024185 181 NTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAP------R--------------RAMFVA- 239 (271)
Q Consensus 181 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~------~--------------~~~l~~- 239 (271)
..+.+++.+|++++.++...-|.|.++|+.++..++.++|.... .+.|.. . ..+|+.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 45788999999998888777799999999999988888765432 122211 1 112222
Q ss_pred eC--CeEEEEcCCCCCCCcCCC
Q 024185 240 AS--SVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 240 ~~--~~v~iw~~~~~~~~~~~~ 259 (271)
+- |.|.||+++.+..+....
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 23 889999999987665443
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.73 E-value=3.5 Score=34.31 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=79.6
Q ss_pred EEEcCCCCEEEEEecCCeEE-EEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe-----
Q 024185 96 VAFDQQGLVFAVAMEAGAIK-LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE----- 169 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~----- 169 (271)
+..++++.+++.+.. |.+. -||--.... ..... .....+..+.+.+++..++++ ..|.+.. ....++
T Consensus 244 v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W---~~~~~-~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 244 VNRSPDGDYVAVSSR-GNFYLTWEPGQPYW---QPHNR-ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred EEEcCCCCEEEEECC-ccEEEecCCCCcce---EEecC-CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 345677776666653 4333 333321110 11222 234568899999998876655 5565443 333443
Q ss_pred EEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec---CCcceeEEEEEecCCcEEEEeC-CeEE
Q 024185 170 KRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN---GNIGVVACLKWAPRRAMFVAAS-SVLS 245 (271)
Q Consensus 170 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~~v~ 245 (271)
.............+..+.|.++++.+++| ..|.+.... ..++.-...+ .-......+.|.++++.+++|. |.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence 12222222122347889999888765555 566655543 3444433322 2234678999998888888887 7665
Q ss_pred EE
Q 024185 246 FW 247 (271)
Q Consensus 246 iw 247 (271)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 44
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.71 E-value=0.65 Score=40.48 Aligned_cols=76 Identities=11% Similarity=0.188 Sum_probs=45.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCC---CCCCcceEEEecC--------------------CccceEEEEEcC----CCcEEE
Q 024185 100 QQGLVFAVAMEAGAIKLFDSRS---YDKGPFDTFLVGG--------------------DTAEVCDIKFSN----DGKSML 152 (271)
Q Consensus 100 ~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~--------------------~~~~v~~~~~s~----~~~~l~ 152 (271)
++...++++..||.+...+... ... ......+.. .......++.++ +..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGS-VWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS--EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCC-eeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 3667788888899888777654 111 011111111 123455666666 678899
Q ss_pred EEecCCeEEEEECCCCeEEEEeec
Q 024185 153 LTTTNNNIYVLDAYGGEKRCGFSL 176 (271)
Q Consensus 153 ~~~~d~~i~~~d~~~~~~~~~~~~ 176 (271)
+.+.|+++|+||+.+++++.+...
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEET
T ss_pred EEeCCCeEEEEECCCCeEEEEecc
Confidence 999999999999999999776543
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.47 E-value=0.57 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCCcEEEEEec-CCeEEEEECCCCeEEEEeecCCC
Q 024185 146 NDGKSMLLTTT-NNNIYVLDAYGGEKRCGFSLEPS 179 (271)
Q Consensus 146 ~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~ 179 (271)
|++++|+++.. +++|.++|..+++.+..+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC
Confidence 57777777654 78999999999988888776444
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.38 E-value=0.62 Score=40.60 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCCcEEEEEecCCeEEEEECCC----CeEEEEe--ecC------------------CCCCceeeEEECC----CCCEEEE
Q 024185 146 NDGKSMLLTTTNNNIYVLDAYG----GEKRCGF--SLE------------------PSPNTNTEATFTP----DGQYVVS 197 (271)
Q Consensus 146 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~--~~~------------------~~~~~v~~~~~~~----~~~~l~~ 197 (271)
++...++.+..||.+....... +...... ... .........+.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888999988887664 2111111 100 0112355566666 7789999
Q ss_pred ecCCCcEEEEEcCCceeEEEe
Q 024185 198 GSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~ 218 (271)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
No 462
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.28 E-value=3.3 Score=32.61 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=64.5
Q ss_pred CeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEe------cCCeEEEEECCCCeEEEEeecC---CCCCc
Q 024185 112 GAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT------TNNNIYVLDAYGGEKRCGFSLE---PSPNT 182 (271)
Q Consensus 112 ~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~---~~~~~ 182 (271)
..|.+||..+.+. ...-.+-.+.|+++.|..+.+.++.|. ....+..||+.+..-. .+... .-+.+
T Consensus 16 ~~lC~yd~~~~qW----~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQW----SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEe----ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCc
Confidence 3689999888775 222233457899999997777777664 3456888998766532 23321 12344
Q ss_pred eeeEEEC-CCC-CEEEEec-C--CCcEEEEEcCCceeEEE-ecCCcceeEEEEE
Q 024185 183 NTEATFT-PDG-QYVVSGS-G--DGTLHAWNINTRNEVAC-WNGNIGVVACLKW 230 (271)
Q Consensus 183 v~~~~~~-~~~-~~l~~~~-~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~ 230 (271)
+..+.+. .|+ ++.+.|. . +..|..||-.+...+.. .......|..+.+
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 6666663 233 3444443 2 33577787655444433 2222334444443
No 463
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=93.18 E-value=4 Score=33.25 Aligned_cols=146 Identities=16% Similarity=0.236 Sum_probs=70.2
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCC--CCCCCcce--EEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCe
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSR--SYDKGPFD--TFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGE 169 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 169 (271)
+....+.+...+.+|..+|.|..-+.. .....+.. ......--+.-..++|...+.-|+.+..---+..-+...++
T Consensus 68 p~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~ 147 (376)
T KOG1520|consen 68 PYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL 147 (376)
T ss_pred ceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCc
Confidence 334444333345556666666666652 11110110 11111112556678898877556665443233333333332
Q ss_pred EEEEeecCCCC---CceeeEEECCCCCE--------------E---EEecCCCcEEEEEcCCceeEEEecCCcceeEEEE
Q 024185 170 KRCGFSLEPSP---NTNTEATFTPDGQY--------------V---VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLK 229 (271)
Q Consensus 170 ~~~~~~~~~~~---~~v~~~~~~~~~~~--------------l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 229 (271)
. ..+..+... .....+..+++|.. + +.+..+|.+.-||..+......+++ -.-.+.++
T Consensus 148 a-~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~-L~F~NGla 225 (376)
T KOG1520|consen 148 A-ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG-LYFPNGLA 225 (376)
T ss_pred c-eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhc-cccccccc
Confidence 1 111111110 11222344443322 2 1334567888888766554333332 23357899
Q ss_pred EecCCcEEEEeC
Q 024185 230 WAPRRAMFVAAS 241 (271)
Q Consensus 230 ~s~~~~~l~~~~ 241 (271)
.|||+.+++.+-
T Consensus 226 LS~d~sfvl~~E 237 (376)
T KOG1520|consen 226 LSPDGSFVLVAE 237 (376)
T ss_pred CCCCCCEEEEEe
Confidence 999999999885
No 464
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.02 E-value=4.4 Score=33.33 Aligned_cols=196 Identities=13% Similarity=0.148 Sum_probs=106.6
Q ss_pred EeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEE----EcCCCCE--EEEEec-C---CeEEEEe
Q 024185 49 RGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVA----FDQQGLV--FAVAME-A---GAIKLFD 118 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~--l~~~~~-d---~~i~i~d 118 (271)
..+..+|...-.-. ++....++-+.+||+ .|+.++.+.....+-+. |.-+|+. |++++. + ..|++|.
T Consensus 57 PAIWvnp~dp~kSl--IigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 57 PAIWVNPADPAKSL--IIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp EEEE--SS-GGG-E--EEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred CcEecCCCCcccce--EEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 34666654432111 556677888999999 56667777544332221 2224443 444442 2 4688997
Q ss_pred CCCCCCCcceEEE-----ecCCccceEEEEE--cC-CCc-EEEEEecCCeEEEEECC---CC----eEEEEeecCCCCCc
Q 024185 119 SRSYDKGPFDTFL-----VGGDTAEVCDIKF--SN-DGK-SMLLTTTNNNIYVLDAY---GG----EKRCGFSLEPSPNT 182 (271)
Q Consensus 119 ~~~~~~~~~~~~~-----~~~~~~~v~~~~~--s~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~~ 182 (271)
+..... .+.... +......+..+++ +| +|. +++....+|.+..|.+. .+ +.++.|.... .
T Consensus 134 id~~~g-~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s---Q 209 (381)
T PF02333_consen 134 IDPDTG-ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS---Q 209 (381)
T ss_dssp EETTTT-EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS----
T ss_pred ecCCCC-cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC---c
Confidence 753221 111111 0011123555555 44 455 45566778988888774 33 4577777644 3
Q ss_pred eeeEEECCCCCEEEEecCCCcEEEEEcCC-----ceeEEEecC--CcceeEEEEEec--CC-cEEEEeC---CeEEEEcC
Q 024185 183 NTEATFTPDGQYVVSGSGDGTLHAWNINT-----RNEVACWNG--NIGVVACLKWAP--RR-AMFVAAS---SVLSFWIP 249 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~v~~~~~s~--~~-~~l~~~~---~~v~iw~~ 249 (271)
+..+..+....+|+.+-++.-|.-|+... ++.+....+ ....|..++.-. ++ .||+.+| ++..+|+.
T Consensus 210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred ceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 78888888888999999987787787652 223333322 345678888754 33 3666665 67999998
Q ss_pred CC
Q 024185 250 NP 251 (271)
Q Consensus 250 ~~ 251 (271)
+.
T Consensus 290 ~~ 291 (381)
T PF02333_consen 290 EG 291 (381)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 465
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=92.71 E-value=0.66 Score=41.27 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=86.7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEE--------EECCCCeEEEEee
Q 024185 104 VFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYV--------LDAYGGEKRCGFS 175 (271)
Q Consensus 104 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~--------~d~~~~~~~~~~~ 175 (271)
.+..|+.++.+.++.-..+..+.............+.++.+++. .+..|..||++-. ||.+ +...+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e---p~~~~- 622 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE---PNISI- 622 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC---Ccccc-
Confidence 57788889999999876333211111112233356677776653 2444445555444 4432 11111
Q ss_pred cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecC---CcceeEEEEEecCCcEEEEeCCe-EEEEcCCC
Q 024185 176 LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNG---NIGVVACLKWAPRRAMFVAASSV-LSFWIPNP 251 (271)
Q Consensus 176 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~-v~iw~~~~ 251 (271)
+.+..++.+.++..| ++.++.+|.+.++...+......... |...|+++....+|-+++.++|+ ++.++.++
T Consensus 623 -~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 623 -PTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred -ccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 222234666777655 67788899999999887666555433 45679999999888888888854 77776666
Q ss_pred CCCC
Q 024185 252 SSNS 255 (271)
Q Consensus 252 ~~~~ 255 (271)
....
T Consensus 699 l~hl 702 (925)
T KOG3522|consen 699 LWHL 702 (925)
T ss_pred cCCc
Confidence 5443
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.48 E-value=0.81 Score=23.51 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=19.8
Q ss_pred CccceEEEEEcCCCcEEEEEec-C--CeEEEE
Q 024185 135 DTAEVCDIKFSNDGKSMLLTTT-N--NNIYVL 163 (271)
Q Consensus 135 ~~~~v~~~~~s~~~~~l~~~~~-d--~~i~~~ 163 (271)
....-....|||||+.|+.++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456778899999999887765 4 444444
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.40 E-value=0.013 Score=48.30 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=82.8
Q ss_pred eEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEEecCCcceEEEcCCCCEEE-EEecCCeEEEEeCCCCCCCcceE
Q 024185 51 LFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGILRLRGRPTVAFDQQGLVFA-VAMEAGAIKLFDSRSYDKGPFDT 129 (271)
Q Consensus 51 ~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~ 129 (271)
..|-|.+.. ++.++.+..+..||-........-.....-.++|..++..++ .+-..+.+++||+.+... +.
T Consensus 40 ~~w~~e~~n-----lavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---qq 111 (615)
T KOG2247|consen 40 HRWRPEGHN-----LAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---QQ 111 (615)
T ss_pred eeEecCCCc-----eehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---HH
Confidence 445566655 556677777777776432221111122223378888886554 456678999999987542 12
Q ss_pred EEecC-CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCE
Q 024185 130 FLVGG-DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 130 ~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 194 (271)
....+ |.... +.|++.+..++.+...|.+.+++..+.+.......|... ++++++.+.+..
T Consensus 112 LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR--gtq~av~lEd~v 173 (615)
T KOG2247|consen 112 LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR--GTQIAVTLEDYV 173 (615)
T ss_pred HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccc--eeEEEeccccee
Confidence 22222 22222 789999999999999999999998776655444434443 777888877643
No 468
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.35 E-value=5.9 Score=33.17 Aligned_cols=183 Identities=15% Similarity=0.184 Sum_probs=97.4
Q ss_pred hhhhccCceEEEEEecCcceeEEEecCCcce-EEEcCCCCEEEEEecCCeEEEEeCCCC-------------------CC
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLRGRPT-VAFDQQGLVFAVAMEAGAIKLFDSRSY-------------------DK 124 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------------~~ 124 (271)
+..-+.||.+.+|+-+.-.....++..-.+. +.+.+..+.|++++.+..+.-|....- ..
T Consensus 148 IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k 227 (418)
T PF14727_consen 148 ICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGK 227 (418)
T ss_pred EEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccc
Confidence 4567889999999887766555555543343 899998888999988888888864210 00
Q ss_pred CcceEEE--ecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEE------CCCC-CEE
Q 024185 125 GPFDTFL--VGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATF------TPDG-QYV 195 (271)
Q Consensus 125 ~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~------~~~~-~~l 195 (271)
.....+. +...--.+..+.++.....+++-+ ..++.+.+. +|+.....+....+ .....| .|+. ..+
T Consensus 228 ~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~krLd~~p--~~~~~Y~~~~~~~~~~~~~l 303 (418)
T PF14727_consen 228 KLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKRLDYNP--SCFCPYRVPWYNEPSTRLNL 303 (418)
T ss_pred cccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEecCCce--eeEEEEEeecccCCCCceEE
Confidence 1111122 111112233444443333444444 345666663 56554444433332 111111 2221 247
Q ss_pred EEecCCCcEEEEEcCCceeEEEecCCcceeEEEEEe---cCCcEEEEeC--CeEEEEcCCCCCC
Q 024185 196 VSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWA---PRRAMFVAAS--SVLSFWIPNPSSN 254 (271)
Q Consensus 196 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~--~~v~iw~~~~~~~ 254 (271)
+.++.++.+.||.= .+.+........+| ++... .-...+++-+ |.+.+--+-|...
T Consensus 304 lV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 304 LVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 88889999999863 33333333222332 33322 2223444444 7888777666543
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=5.2 Score=37.89 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=83.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEE--------EcCCCcEEEEEecCCeEEEEECC-
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIK--------FSNDGKSMLLTTTNNNIYVLDAY- 166 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~d~~i~~~d~~- 166 (271)
+-+-|.=++... +-|+.+.+|+.+++.. ...+.+-...|..+. |.|.=++++..+.--.|.++-+.
T Consensus 84 mGiFpeI~RaWi-TiDn~L~lWny~~~~e----~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 84 MGIFPEIGRAWI-TIDNNLFLWNYESDNE----LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eccchhhcceEE-EeCCeEEEEEcCCCCc----cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 444444333222 3478999999988543 223334344455443 33333444444444455555432
Q ss_pred ---CCeE---EEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC----C---ce-e----------------EE
Q 024185 167 ---GGEK---RCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN----T---RN-E----------------VA 216 (271)
Q Consensus 167 ---~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~---~~-~----------------~~ 216 (271)
++.. ...+.....+..|.++....+|+.+++|- || .+|.+. + ++ + +.
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 1111 11133334445688899888888666655 44 455431 1 11 1 11
Q ss_pred Eec-CCcceeEEEEEecCCcEEEEeC--CeEEEEcCCC
Q 024185 217 CWN-GNIGVVACLKWAPRRAMFVAAS--SVLSFWIPNP 251 (271)
Q Consensus 217 ~~~-~~~~~v~~~~~s~~~~~l~~~~--~~v~iw~~~~ 251 (271)
.+. .+..+|..++.......+.+-+ +.+.+|++..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 123 4567899999988777777777 8899999977
No 470
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.23 E-value=6.8 Score=33.61 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=58.9
Q ss_pred EEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCC-CceeeEEECCCCCEEEEecC-------------CCcEEEE
Q 024185 142 IKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSP-NTNTEATFTPDGQYVVSGSG-------------DGTLHAW 207 (271)
Q Consensus 142 ~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-------------dg~i~iw 207 (271)
+...++|.+++... ..+..+|+- |+.+..+...... ..-..+...|+|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66788998776555 788899974 6666665544321 11234777899999987771 1236666
Q ss_pred EcCCceeEEEec--CC----c---------------------ceeEEEEEec-CCcEEEEeC--CeEEEEcCCCCCCC
Q 024185 208 NINTRNEVACWN--GN----I---------------------GVVACLKWAP-RRAMFVAAS--SVLSFWIPNPSSNS 255 (271)
Q Consensus 208 d~~~~~~~~~~~--~~----~---------------------~~v~~~~~s~-~~~~l~~~~--~~v~iw~~~~~~~~ 255 (271)
| .+|+.+..+. .| . ..++++.+.+ ++.+++++- ..|...|.+++++.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 6 7777766541 01 0 2478999999 666666665 56777776666543
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.15 E-value=5.4 Score=32.26 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=60.1
Q ss_pred eEEEcCCCCEEEEEecC------CeEEEEeCCCCCCCcceEEEe-------------cCCccceEEEEEcCCCcEEEEEe
Q 024185 95 TVAFDQQGLVFAVAMEA------GAIKLFDSRSYDKGPFDTFLV-------------GGDTAEVCDIKFSNDGKSMLLTT 155 (271)
Q Consensus 95 ~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~ 155 (271)
.+++.+++.++++.-.+ ..|..++.. ++. ...+.+ .......-.++++|+|+.|+++.
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~--~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRV--IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-Ccc--cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 47787788877777666 678888876 332 111111 12345688999999999777664
Q ss_pred c-----CC-----------eEEEEECCC-CeEEEE--eecCC-----CCCceeeEEECCCCCEEEE
Q 024185 156 T-----NN-----------NIYVLDAYG-GEKRCG--FSLEP-----SPNTNTEATFTPDGQYVVS 197 (271)
Q Consensus 156 ~-----d~-----------~i~~~d~~~-~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~ 197 (271)
+ |+ .+..||..+ ++.... +.... ....+..+.+-+++++++.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 3 22 233455444 322222 22221 2345888999999987763
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=2.7 Score=39.63 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=81.4
Q ss_pred hccCceEEEEEecCcceeEEEecCCcce--EE--------EcCCCCEEEEEecCCeEEEEeCC----CCCCCcc-eEEEe
Q 024185 68 LTTALEYGIFVLMLASFQGILRLRGRPT--VA--------FDQQGLVFAVAMEAGAIKLFDSR----SYDKGPF-DTFLV 132 (271)
Q Consensus 68 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~--------~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~-~~~~~ 132 (271)
.+.|..+.+|+.+++...+.+.+-+... +. |.|.=+++..-+.--.|.++-+. ++....+ ..+.+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3668999999999977777665543222 11 22233444444445556665442 2222111 11233
Q ss_pred cCCccceEEEEEcCCCcEEEEEecCCeEEEEEC----CCC---e-E-------------EEE-eecC-CCCCceeeEEEC
Q 024185 133 GGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDA----YGG---E-K-------------RCG-FSLE-PSPNTNTEATFT 189 (271)
Q Consensus 133 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~----~~~---~-~-------------~~~-~~~~-~~~~~v~~~~~~ 189 (271)
......|.|+....+|+.+++ +.|| .+|.+ .++ + + +.+ ++.. ....+|..+..+
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 333567899998888886555 4555 34443 111 1 1 000 0111 112348888888
Q ss_pred CCCCEEEEecCCCcEEEEEcCC
Q 024185 190 PDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 190 ~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
...+.+.+-++.|+|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999975
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.10 E-value=6.7 Score=33.25 Aligned_cols=105 Identities=12% Similarity=0.186 Sum_probs=59.5
Q ss_pred CccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE--EEEee---cCCCCCceeeEEECCCC------CEEEEec----
Q 024185 135 DTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK--RCGFS---LEPSPNTNTEATFTPDG------QYVVSGS---- 199 (271)
Q Consensus 135 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~---~~~~~~~v~~~~~~~~~------~~l~~~~---- 199 (271)
.-.....++|.|||+.|++--..|.|++++..++.. +..+. ..........++++|+- .+|+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999998666544469999998655432 21111 11123457889999874 2343321
Q ss_pred ------CCCcEEEEEcCCc-------eeEE-Ee---cCCcceeEEEEEecCCcEEEEeC
Q 024185 200 ------GDGTLHAWNINTR-------NEVA-CW---NGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 200 ------~dg~i~iwd~~~~-------~~~~-~~---~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
....|.-|.+... +.+. .+ ..|.+ ..|.|.|||.+.++.+
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~G 164 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEEC
Confidence 1234555554321 1111 12 12443 5788999998766554
No 474
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.95 E-value=4.1 Score=30.43 Aligned_cols=142 Identities=9% Similarity=0.024 Sum_probs=79.3
Q ss_pred CEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC---C---eEEEEE-CC----CCeEE
Q 024185 103 LVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN---N---NIYVLD-AY----GGEKR 171 (271)
Q Consensus 103 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~---~i~~~d-~~----~~~~~ 171 (271)
+.|+.+.....|.+|++.+.+..+...+. .-+.|..+.++..|+++++--.+ . .+|+|= .+ ..+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 44545466778999999955553333333 23789999999999999987432 2 566652 21 11222
Q ss_pred E-EeecCCC-------------------CCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee-EE-----Eec-----C
Q 024185 172 C-GFSLEPS-------------------PNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE-VA-----CWN-----G 220 (271)
Q Consensus 172 ~-~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~-----~~~-----~ 220 (271)
+ ++-+|.. ...+.+++-.|-.--|+.|+. +.+.+|.+..... .. .+. -
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 2 1222110 123556666665333555553 4788888764433 11 111 1
Q ss_pred C-cceeEEEEEecCCcEEEEeC-CeEEEEcCC
Q 024185 221 N-IGVVACLKWAPRRAMFVAAS-SVLSFWIPN 250 (271)
Q Consensus 221 ~-~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~ 250 (271)
| +.....+++. +.++|..+ ..+++..+.
T Consensus 185 ~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 185 IDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 1 1224455554 56888888 667776553
No 475
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.86 E-value=8.7 Score=34.06 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=88.4
Q ss_pred cceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCcc------ceEEEEEcCCCcEEEEEec-C---CeEEE
Q 024185 93 RPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTA------EVCDIKFSNDGKSMLLTTT-N---NNIYV 162 (271)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~-d---~~i~~ 162 (271)
+-.+.+.++++.+++...+|.|.+||.............. .+.. -|.....-....++++.+. + -..++
T Consensus 132 vv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~-~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL 210 (670)
T PF10395_consen 132 VVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL-KSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKL 210 (670)
T ss_pred eEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccc-ccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEE
Confidence 3447888999999999999999999994433211111111 1111 1122111122344554443 2 34677
Q ss_pred EECC-CCeEEEEee---cCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEecCC-----c-ceeEEEEEec
Q 024185 163 LDAY-GGEKRCGFS---LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGN-----I-GVVACLKWAP 232 (271)
Q Consensus 163 ~d~~-~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~-~~v~~~~~s~ 232 (271)
+.+. +......+. .+.....-..+++. +|+..-. .++.|.+|++.+.+..+++.-. . ..+.++.--.
T Consensus 211 ~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 211 ISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 7771 122222221 11111011123443 4543333 6779999999888776665321 1 2233443222
Q ss_pred CCcEEEEeCCeEEEEcCCCCCCCcCCC
Q 024185 233 RRAMFVAASSVLSFWIPNPSSNSTDES 259 (271)
Q Consensus 233 ~~~~l~~~~~~v~iw~~~~~~~~~~~~ 259 (271)
..+.|++..+.|++.|+.-...+.+.+
T Consensus 288 ~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 288 PNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 456777777999999998887777666
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.54 E-value=2.8 Score=35.03 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=73.3
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCcceeEEE----ecC--CcceEEEcCCCCEEEEEecCC
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQGIL----RLR--GRPTVAFDQQGLVFAVAMEAG 112 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~~~d~ 112 (271)
.+-...++++.++.||+|.+. +|.--.+++|.+++....+....+ +.. ++....|+.+ .-+|.-...|
T Consensus 60 Sfdm~d~G~I~SIkFSlDnki-----lAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 60 SFDMDDKGEIKSIKFSLDNKI-----LAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred eeeecCCCceeEEEeccCcce-----EEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence 333455679999999999998 778889999999998544433222 112 2344777765 4466555444
Q ss_pred eEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec--CCeEEEEECCCC
Q 024185 113 AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT--NNNIYVLDAYGG 168 (271)
Q Consensus 113 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~ 168 (271)
+.+|.....+. .....+.|...|.-..|.++.+.++.++. .+++.=+.++++
T Consensus 134 -~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 134 -IEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred -eEEEEEchhhh---hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 55554433221 13335567788999999998776554432 333333444433
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.95 E-value=1.2 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.696 Sum_probs=17.2
Q ss_pred eeeEEECCCCCEEEEecC-C--CcEEEE
Q 024185 183 NTEATFTPDGQYVVSGSG-D--GTLHAW 207 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~-d--g~i~iw 207 (271)
-....|+|||++|+.++. + |.-.||
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 667999999998886654 4 555554
No 478
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.77 E-value=1.7 Score=27.51 Aligned_cols=44 Identities=14% Similarity=-0.127 Sum_probs=31.5
Q ss_pred hhhhccCceEEEEEecCcceeEEEec-CCcceEEEcCCCCEEEEE
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRL-RGRPTVAFDQQGLVFAVA 108 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 108 (271)
++.+..+|.+.-||..+++....+.+ .-.+.+++++|+++++.+
T Consensus 30 ~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred eecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 67888999999999999886555544 345669999999987776
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.52 E-value=1.8 Score=36.08 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=94.4
Q ss_pred EEcccccceEEeeEEecCCchhhhhhhhhhccCceEEEEEecCccee-EEE----ec---CCcc-eEEEcCCCCEEEEEe
Q 024185 39 EFFATSKGIRRGLFLSACLQLMIALCLVLLTTALEYGIFVLMLASFQ-GIL----RL---RGRP-TVAFDQQGLVFAVAM 109 (271)
Q Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~----~~---~~~~-~~~~~~~~~~l~~~~ 109 (271)
+.+...-..+..+...|+|+.+++ .++ ..+.++++.+.... +.+ ++ |.+. .+..-..|.-+.+++
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv---~~g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYV---RTG---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEE---ecC---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 334444556777888999997543 122 56788887654321 111 11 1121 122333566788888
Q ss_pred cCCeEEEE-eCCCCCCCcc-eEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEE
Q 024185 110 EAGAIKLF-DSRSYDKGPF-DTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEAT 187 (271)
Q Consensus 110 ~d~~i~i~-d~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 187 (271)
.||-|.-| |.+.+....+ +...++-...++..+.-..+.+-+++-+.+|++..+.....+.+-.-..... ..-++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~---~~~~~ 364 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQA---PQLVA 364 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcC---cceee
Confidence 89988877 5544332111 1111211223344443333455677778888888877544433322121222 44489
Q ss_pred ECCCCCEEEEecCCCcEEEEEcCCceeEEEe
Q 024185 188 FTPDGQYVVSGSGDGTLHAWNINTRNEVACW 218 (271)
Q Consensus 188 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 218 (271)
+||++.++++-. .|.++++.+++..+-.++
T Consensus 365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 365 MSPNQAYLLSED-QGKIRLAQLENRNPEISW 394 (733)
T ss_pred eCcccchheeec-CCceEEEEecCCCCCccH
Confidence 999999888644 467999988776554433
No 480
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.24 E-value=5.8 Score=35.69 Aligned_cols=106 Identities=9% Similarity=0.158 Sum_probs=57.0
Q ss_pred eEEEEEcCCCcEEEEEecCC-----eEEEEEC---CCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcC
Q 024185 139 VCDIKFSNDGKSMLLTTTNN-----NIYVLDA---YGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNIN 210 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d~-----~i~~~d~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 210 (271)
-..++|-|+|..+++-..|| .+..+.. +.|+.-....... .....+|+-....++. ...+.+++|-..
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dE---k~~~~~wn~~s~vlav-~~~n~~~lwttk 324 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDE---KAFLENWNLLSTVLAV-AEGNLLKLWTTK 324 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchh---hhhhhhhhHHHHHHHH-hhcceEEEEEcc
Confidence 34589999999999876544 3555542 1122111111111 1344666655544433 345689999876
Q ss_pred CceeEEEecCCcceeEEEEEecCC--cEEEEeCCeEEEEc
Q 024185 211 TRNEVACWNGNIGVVACLKWAPRR--AMFVAASSVLSFWI 248 (271)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~v~iw~ 248 (271)
+-.-.-...-.-..+.-+.|+|.. .++++.++.|..-+
T Consensus 325 NyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~ 364 (1243)
T COG5290 325 NYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVF 364 (1243)
T ss_pred ceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEE
Confidence 644333332233446778999953 35555555544433
No 481
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.14 E-value=13 Score=34.11 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred cCCcceEEEcC-CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceE-----------EEEEcCCCcEEEEEecC
Q 024185 90 LRGRPTVAFDQ-QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVC-----------DIKFSNDGKSMLLTTTN 157 (271)
Q Consensus 90 ~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~-----------~~~~s~~~~~l~~~~~d 157 (271)
+.....++|+| +.+.||+....|...+|++............+.....+-. .+.|.++.+.|+.++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Q ss_pred CeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 158 NNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
.+.++|+++......+........|..+.-+|+..-.+.--....|...|+..
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred -ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.10 E-value=10 Score=31.86 Aligned_cols=29 Identities=14% Similarity=0.513 Sum_probs=24.6
Q ss_pred eeeEEECCCCCEEEEecCCCcEEEEEcCC
Q 024185 183 NTEATFTPDGQYVVSGSGDGTLHAWNINT 211 (271)
Q Consensus 183 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 211 (271)
+..+...+..+.+++...+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 78888888889999999999999999974
No 483
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.83 E-value=1.5 Score=27.73 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=29.9
Q ss_pred ecCCCcEEEEEcCCceeEEEecCCcceeEEEEEecCCcEEEEeC
Q 024185 198 GSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPRRAMFVAAS 241 (271)
Q Consensus 198 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 241 (271)
+..+|.+.-||..+++....+.+-. -.+.++.+||+.+++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence 3446789999999988766555433 358999999999888775
No 484
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.75 E-value=11 Score=31.52 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=59.9
Q ss_pred CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCC---cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCC
Q 024185 92 GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKG---PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGG 168 (271)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 168 (271)
....+.+.+++..++++ ..|.+.. ....++.. .+...........+.++.|.+++..+ .++..|.+.... ..|
T Consensus 282 ~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~-D~G 357 (398)
T PLN00033 282 RIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRST-DGG 357 (398)
T ss_pred ceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEeC-CCC
Confidence 34568888898877655 4566543 33333210 11121111122458899999887754 455567665553 444
Q ss_pred eEEEEee-cCCCCCceeeEEECCCCCEEEEecCCCcEEEE
Q 024185 169 EKRCGFS-LEPSPNTNTEATFTPDGQYVVSGSGDGTLHAW 207 (271)
Q Consensus 169 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 207 (271)
+.-.... ...-+.....+.|.++++.+++| .+|.|.-|
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 4322222 12122347788987777665554 46666544
No 485
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.68 E-value=10 Score=31.20 Aligned_cols=184 Identities=13% Similarity=-0.002 Sum_probs=0.0
Q ss_pred hhhhccCceEEEEEecCcceeEEEecC----CcceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCc-cce
Q 024185 65 LVLLTTALEYGIFVLMLASFQGILRLR----GRPTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDT-AEV 139 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~v 139 (271)
+..+..+|.+.-.|.+++..+...... ....-.+..+|+ ++.++.++.++.+|..+++. ........ ..+
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~----~W~~~~~~~~~~ 145 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL----VWSRNVGGSPYY 145 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE----EEEEecCCCeEE
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCC-CCCceeeEEECCCCCEEEEecC--CCcEEEEEcCCceeEE
Q 024185 140 CDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEP-SPNTNTEATFTPDGQYVVSGSG--DGTLHAWNINTRNEVA 216 (271)
Q Consensus 140 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~ 216 (271)
..-..-.++..+... .++.+.-.|..+++.+....... ....+..-.. .....++.+.. ++.+.-.|..+|....
T Consensus 146 ~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 146 ASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEee
Q ss_pred E----ecCC------cceeEEEEEecCCcEEEEeC-CeEEEEcCCCCCCC
Q 024185 217 C----WNGN------IGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSSNS 255 (271)
Q Consensus 217 ~----~~~~------~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~~~ 255 (271)
. .... ...+..-...-++.....+. +.+...+..+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceE
No 486
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.43 E-value=9.1 Score=30.21 Aligned_cols=148 Identities=12% Similarity=0.116 Sum_probs=90.6
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeE---EE
Q 024185 96 VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEK---RC 172 (271)
Q Consensus 96 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~ 172 (271)
+.++ +++.+.+..+.-++|.|+.+... |...-.+. -.+.-.++ .-.|++...+..|.-+.+.|+.+.+. ..
T Consensus 92 v~vs--e~yvyvad~ssGL~IvDIS~P~s-P~~~~~ln-t~gyaygv--~vsGn~aYVadlddgfLivdvsdpssP~lag 165 (370)
T COG5276 92 VRVS--EEYVYVADWSSGLRIVDISTPDS-PTLIGFLN-TDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred eEec--ccEEEEEcCCCceEEEeccCCCC-cceecccc-CCceEEEE--EecCCEEEEeeccCcEEEEECCCCCCceeee
Confidence 4554 56677777778899999998774 32222222 11233343 44578888888666678889876543 22
Q ss_pred EeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec--CCcceeEEEEEecCCcEEEEeCCeEEEEcCC
Q 024185 173 GFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN--GNIGVVACLKWAPRRAMFVAASSVLSFWIPN 250 (271)
Q Consensus 173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~v~iw~~~ 250 (271)
++...... -..++.| |++...+..|+-+.+.|+.+.....-+. .....+.++..+++.-+++....-+.+-|..
T Consensus 166 rya~~~~d--~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s 241 (370)
T COG5276 166 RYALPGGD--THDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVS 241 (370)
T ss_pred eeccCCCC--ceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecC
Confidence 23222221 2335554 6677778889999999998654433221 1223578888888877777776556666655
Q ss_pred CCC
Q 024185 251 PSS 253 (271)
Q Consensus 251 ~~~ 253 (271)
+.+
T Consensus 242 ~~s 244 (370)
T COG5276 242 GPS 244 (370)
T ss_pred CCC
Confidence 543
No 487
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=2.4 Score=31.49 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=66.9
Q ss_pred CCcEEEEEec--CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEE-EEecCCCcEEEEEcCCceeEEEecCCcc
Q 024185 147 DGKSMLLTTT--NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYV-VSGSGDGTLHAWNINTRNEVACWNGNIG 223 (271)
Q Consensus 147 ~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 223 (271)
+|.++.+.+. ...|+.||+++++.+..-+..... +..=-...-|.++ ...-.+|.-..+|.++.+++..+.- .+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~--~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT--VFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcc--ccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CC
Confidence 4555666554 557999999999987765544211 1111111112333 3344578889999999888877653 22
Q ss_pred eeEEEEEecCCcEEEEeC--CeEEEEcCCCCCCCcCCC----CCCcccccc
Q 024185 224 VVACLKWAPRRAMFVAAS--SVLSFWIPNPSSNSTDES----TDPQATVKS 268 (271)
Q Consensus 224 ~v~~~~~s~~~~~l~~~~--~~v~iw~~~~~~~~~~~~----~~~~~~~~~ 268 (271)
.=+.++- |+.-|+.++ ..++.-|.++.......+ ..|+..+.|
T Consensus 132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE 180 (262)
T COG3823 132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE 180 (262)
T ss_pred cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc
Confidence 2345543 444455554 558887887765544332 345555443
No 488
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.21 E-value=9.7 Score=30.24 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=90.1
Q ss_pred hhhhccCceEEEEEecCcce-----eEEEecC---Ccce-EEEcC--CCCEEEEE-ecCCeEEEEeCCCCCCC-------
Q 024185 65 LVLLTTALEYGIFVLMLASF-----QGILRLR---GRPT-VAFDQ--QGLVFAVA-MEAGAIKLFDSRSYDKG------- 125 (271)
Q Consensus 65 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~---~~~~-~~~~~--~~~~l~~~-~~d~~i~i~d~~~~~~~------- 125 (271)
++-+++||+|.-|...-+.. ...+... .++- +++.. .+.+|+.+ -.+++|.++|-.-.+..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 56778999999998533222 1122211 1221 55543 35667666 46789999986533210
Q ss_pred --------cceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEECCCCeEEEEeecCCCCCceeeEEECC------C
Q 024185 126 --------PFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTP------D 191 (271)
Q Consensus 126 --------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~------~ 191 (271)
|+.+..+. ..-.|+-..-.++.+.=..+..-|.|-+||+ .++.++++.....-.....++..| .
T Consensus 183 P~iPagyAPFnIqnig-~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLG-GTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEEC-CeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00000000 0001111111222222222333478999996 477788775433323345566654 3
Q ss_pred CCEEEEecCCCcEEEEEcCCceeEEEecCCcc------eeEEEEEec
Q 024185 192 GQYVVSGSGDGTLHAWNINTRNEVACWNGNIG------VVACLKWAP 232 (271)
Q Consensus 192 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~ 232 (271)
+.+|+---.||+|..+|..+++.+-.+....+ ..+.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 55565555699999999999998877754332 356777755
No 489
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.05 E-value=5.6 Score=27.27 Aligned_cols=113 Identities=10% Similarity=0.145 Sum_probs=64.3
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCC------CcceEEEecCCccceEEEEEcC-----CCcEEEEEecCCeEEEEEC
Q 024185 97 AFDQQGLVFAVAMEAGAIKLFDSRSYDK------GPFDTFLVGGDTAEVCDIKFSN-----DGKSMLLTTTNNNIYVLDA 165 (271)
Q Consensus 97 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~~~d~ 165 (271)
.|.....-|++++..|.|.|++...... ..+.... -...|++++-.+ +...|+.|+. ..+..||+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 4555555688888889999998764421 1122222 235677775433 3456666664 47999999
Q ss_pred CCCeEEEEeecCCCCCceeeEEE---CC-CCCEEEEecCCCcEEEEEcCCceeEEE
Q 024185 166 YGGEKRCGFSLEPSPNTNTEATF---TP-DGQYVVSGSGDGTLHAWNINTRNEVAC 217 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~---~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 217 (271)
.+..-+..-..+.+ +.++.+ .. +..+++.|+ +-.|.-+|..-.+...+
T Consensus 81 ~~N~d~Fyke~~DG---vn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLFYKEVPDG---VNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhhhhhCccc---eeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 87765543333333 555555 22 233444443 45677777654444333
No 490
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.80 E-value=17 Score=32.57 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=31.8
Q ss_pred ceeeEEECCCCCEEEEecCCCcEEEEEcCCceeEEEec
Q 024185 182 TNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWN 219 (271)
Q Consensus 182 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 219 (271)
.+..+..||+.++|+.=...|.|.+-+....+....+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 37789999999999999999999999887777666654
No 491
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.62 E-value=6.6 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=22.2
Q ss_pred ceeEEEEEecCC------cEEEEeC--CeEEEEcCCCC
Q 024185 223 GVVACLKWAPRR------AMFVAAS--SVLSFWIPNPS 252 (271)
Q Consensus 223 ~~v~~~~~s~~~------~~l~~~~--~~v~iw~~~~~ 252 (271)
..+.+++|||.| .+|++.. +.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 368999999954 3566554 88999987753
No 492
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=88.31 E-value=5.1 Score=36.64 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=52.2
Q ss_pred EEEEe-cCCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEEE-ecCCC-----cEEEEEcCC-ceeEEEecCCc
Q 024185 151 MLLTT-TNNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVS-GSGDG-----TLHAWNINT-RNEVACWNGNI 222 (271)
Q Consensus 151 l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg-----~i~iwd~~~-~~~~~~~~~~~ 222 (271)
|+... ..+.|.+-|.........-..+.. .+.+.+|||||++++. .+.++ .|++-|+.+ +..+..++-..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~--~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTI--SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCC--ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 44444 335888888765444332022333 3888999999999997 44443 488888875 33345555556
Q ss_pred ceeEEEEEecCCcE
Q 024185 223 GVVACLKWAPRRAM 236 (271)
Q Consensus 223 ~~v~~~~~s~~~~~ 236 (271)
..|..-...++|..
T Consensus 399 aaiprwrv~e~gdt 412 (912)
T TIGR02171 399 AAIPRWRVLENGDT 412 (912)
T ss_pred ccccceEecCCCCe
Confidence 66666666666653
No 493
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.82 E-value=1.9 Score=20.94 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=20.5
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEe
Q 024185 150 SMLLTTTNNNIYVLDAYGGEKRCGF 174 (271)
Q Consensus 150 ~l~~~~~d~~i~~~d~~~~~~~~~~ 174 (271)
.+++++.+|.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999998876543
No 494
>PRK13684 Ycf48-like protein; Provisional
Probab=87.57 E-value=14 Score=30.06 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=63.6
Q ss_pred ccceEEEEEcCCCcEEEEEecCCeEEE-EECCCCeEEEEeecCCCCCceeeEEECCCCCEEEEecCCCcEEEEEcCCcee
Q 024185 136 TAEVCDIKFSNDGKSMLLTTTNNNIYV-LDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNE 214 (271)
Q Consensus 136 ~~~v~~~~~s~~~~~l~~~~~d~~i~~-~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 214 (271)
...+.++.+.|++.+++++. .|.+.. +| ..++.-..... .....+..+.+.|+++.++.+ ..|.+.+=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeC-CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45788999999987665544 555443 22 22221122221 222348889999999877665 456654322333333
Q ss_pred EEEecC----CcceeEEEEEecCCcEEEEeC-CeEEEEcCCCCC
Q 024185 215 VACWNG----NIGVVACLKWAPRRAMFVAAS-SVLSFWIPNPSS 253 (271)
Q Consensus 215 ~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~~v~iw~~~~~~ 253 (271)
-..... ....+.++.+.|+++.++++. |.+. ...+.++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGK 290 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence 222111 123578899999888888776 5443 4444443
No 495
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=87.14 E-value=14 Score=29.58 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=50.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecC--------------------CeE
Q 024185 101 QGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTN--------------------NNI 160 (271)
Q Consensus 101 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------------~~i 160 (271)
+|++.++=+..|.+..+|.++++.. ....+ .+....++|. |.+++++-.. --+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e--~Va~v---pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv 284 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQ--PVAFL---PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGV 284 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEE--EEEEC---CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccE
Confidence 5776677777899999998877741 22333 3566778888 7777665421 125
Q ss_pred EEEECCCCeEEEEeecCCCCCceeeEEECCC
Q 024185 161 YVLDAYGGEKRCGFSLEPSPNTNTEATFTPD 191 (271)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 191 (271)
.+.|+++|..+..+.....-..+..++.-|.
T Consensus 285 ~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 285 AVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 5566666666655544433223444554444
No 496
>PRK10115 protease 2; Provisional
Probab=87.01 E-value=23 Score=32.07 Aligned_cols=200 Identities=11% Similarity=0.011 Sum_probs=93.9
Q ss_pred EeeEEecCCchhhhhhhhhh-ccCceEEEEEecCc--ceeEEEecCC--cce-EEEcCCCCEEEEEec---CCeEEEEeC
Q 024185 49 RGLFLSACLQLMIALCLVLL-TTALEYGIFVLMLA--SFQGILRLRG--RPT-VAFDQQGLVFAVAME---AGAIKLFDS 119 (271)
Q Consensus 49 ~~~~~s~~~~~~~~~~l~s~-~~dg~i~iwd~~~~--~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~---d~~i~i~d~ 119 (271)
..+.|+++++.+++...--. .....++.+++.++ +....+.... ... ...+.++++++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 45899999886433111000 12246777888877 3344444322 222 233448887665533 357888885
Q ss_pred CCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEec---CCeEEEEECCCCeEEEEeecCCCCCceeeEEECCCCCEEE
Q 024185 120 RSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTT---NNNIYVLDAYGGEKRCGFSLEPSPNTNTEATFTPDGQYVV 196 (271)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 196 (271)
......+..... ...+....+. +..+.+++.... ...|...++.+......+..+.....+..+.+. .+.+++
T Consensus 255 ~~~~~~~~~~~~--~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~ 330 (686)
T PRK10115 255 ELADAEPFVFLP--RRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVV 330 (686)
T ss_pred cCCCCCceEEEE--CCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEE
Confidence 432211111211 1112222222 333333333322 223444455421112233333222347777776 334555
Q ss_pred EecCCCcEE--EEEcCCceeEEEec-CCcceeEEEEEe--cCC-cEEEEeC-----CeEEEEcCCCCC
Q 024185 197 SGSGDGTLH--AWNINTRNEVACWN-GNIGVVACLKWA--PRR-AMFVAAS-----SVLSFWIPNPSS 253 (271)
Q Consensus 197 ~~~~dg~i~--iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~-~~l~~~~-----~~v~iw~~~~~~ 253 (271)
+...+|.-+ +++...+ .+..+. .....+..+.++ +++ .++++.+ +.+..+|+.+++
T Consensus 331 ~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 331 EERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 556666544 4454333 334433 222233344455 343 3444443 779999988765
No 497
>PLN02153 epithiospecifier protein
Probab=86.89 E-value=15 Score=29.82 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCcEEEEEecC-----CeEEEEECCCCeEEEE--eecC--CCCCceeeEEECCCCCEEEEecCC-----------CcEEE
Q 024185 147 DGKSMLLTTTN-----NNIYVLDAYGGEKRCG--FSLE--PSPNTNTEATFTPDGQYVVSGSGD-----------GTLHA 206 (271)
Q Consensus 147 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i 206 (271)
+++.++.|+.+ ..+.+||..+.+-... +... ..+..-.+++ .-++++.+.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 45666777653 3578899877653321 1100 1111111122 2356666777653 24778
Q ss_pred EEcCCcee
Q 024185 207 WNINTRNE 214 (271)
Q Consensus 207 wd~~~~~~ 214 (271)
||..+.+-
T Consensus 164 yd~~~~~W 171 (341)
T PLN02153 164 YNIADGKW 171 (341)
T ss_pred EECCCCeE
Confidence 88876543
No 498
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=86.28 E-value=9.3 Score=35.09 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=50.5
Q ss_pred EEEEe-cCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEE-EecCC-----eEEEEECCCC-eEEEEeec
Q 024185 105 FAVAM-EAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLL-TTTNN-----NIYVLDAYGG-EKRCGFSL 176 (271)
Q Consensus 105 l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~-----~i~~~d~~~~-~~~~~~~~ 176 (271)
||... ..+.+.+-|...... ...-..+..++.+.+|||||+.|+. .+.++ .|++-|+++. ..+-++..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~----~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGAS----RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCc----eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 44444 335888888876553 2120235788999999999999998 44443 4888888653 22333433
Q ss_pred CCCCCceeeEEECCCCCE
Q 024185 177 EPSPNTNTEATFTPDGQY 194 (271)
Q Consensus 177 ~~~~~~v~~~~~~~~~~~ 194 (271)
.. ..|..-...++|..
T Consensus 397 e~--aaiprwrv~e~gdt 412 (912)
T TIGR02171 397 EN--AAIPRWRVLENGDT 412 (912)
T ss_pred cc--ccccceEecCCCCe
Confidence 32 23544455565553
No 499
>PLN02153 epithiospecifier protein
Probab=85.98 E-value=17 Score=29.53 Aligned_cols=139 Identities=6% Similarity=-0.044 Sum_probs=63.9
Q ss_pred eEEEEEecCcceeEEEec---CCc---ceEEEcCCCCEEEEEecC-----CeEEEEeCCCCCCCcceEEEecC---Cccc
Q 024185 73 EYGIFVLMLASFQGILRL---RGR---PTVAFDQQGLVFAVAMEA-----GAIKLFDSRSYDKGPFDTFLVGG---DTAE 138 (271)
Q Consensus 73 ~i~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~---~~~~ 138 (271)
.+.+||..+.+-...-.. ... ......-+++.++.|+.+ ..+..||..+.+... ...+.. ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~--~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTF--LTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEE--eccCCCCCCCCCc
Confidence 577888877653321111 111 111122245666666643 357889988765311 111100 0111
Q ss_pred eEEEEEcCCCcEEEEEecC-----------CeEEEEECCCCeEEEEeecCC---CCCceeeEEECCCCCEEEEecCC---
Q 024185 139 VCDIKFSNDGKSMLLTTTN-----------NNIYVLDAYGGEKRCGFSLEP---SPNTNTEATFTPDGQYVVSGSGD--- 201 (271)
Q Consensus 139 v~~~~~s~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d--- 201 (271)
....+..-+++.++.|+.+ ..+.+||..+.+-.. +.... ....-.+++. -+++.++.++.+
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~ 206 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSI 206 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEecccccc
Confidence 1111223356666777653 257788887665332 11111 1100111222 355655555421
Q ss_pred ----------CcEEEEEcCCceeE
Q 024185 202 ----------GTLHAWNINTRNEV 215 (271)
Q Consensus 202 ----------g~i~iwd~~~~~~~ 215 (271)
..+.+||+.+.+-.
T Consensus 207 ~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred ccCCccceecCceEEEEcCCCcEE
Confidence 46888998776543
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.66 E-value=8.2 Score=34.61 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=40.8
Q ss_pred ceEEEcCCCCEEEEEecCCeEEEEeCCCCCCCcceEEEecCCccceEEEEEcCCCcEEEEEecCCeEEEEE
Q 024185 94 PTVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLD 164 (271)
Q Consensus 94 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~~d 164 (271)
..+.-+|.+..++.+..||.|.+|+....... .... ...+-..+.|...| |++...|..+.-|.
T Consensus 18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs--ki~~---~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 18 TAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS--KICE---EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeecCCCceEEEEecCCcEEEEeecccchh--hhhh---hcCCccceeeeccc--eEEEeccchhheee
Confidence 44677899999999999999999997654420 0111 11233445566554 55555666666665
Done!