Citrus Sinensis ID: 024187

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MSESETQEQQQKPKREGDFDDFNLIAKKSKIEKVNENEEEAARAQIMHKQIDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGHCISFYSATKSIRNIFILLCLATFELLVRFLEI
ccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEccccccccEEEEEccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccEEEEEEcccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEccccccHHHHHHHcccccccccccccccEEEcccccEEEEEcccccccccccccc
cccccccccccccccccccccccEEEcccccHHcccccccEEEEEEccccccccEEEEEEEccccccccHHHHHEEEccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccEEEEEEcccccEEEEEccEEEccccccccccccEEEEcccccccccHHHHHHHHHcccEEEEccEEccEEEEEHHcccHHHccccccccccccccccEEEEEEcccHHHHHHHHHcc
msesetqeqqqkpkregdfddfnlIAKKSKIEKVNENEEEAARAQIMHKQIDFVEIEADaaedkgsrhtmeDASVVLVdassdsppnlrcaHFAIFDGHGGRLAAEYAQKRLHANVIsaglprfrktdeSLLQesvsggwqdgaTAVCIWILGRTVFVANIGDAKAVVARSsivdgsnnhldelSSLKAIVVTRVHKAIYPQERARIQksggtvssngrlqgRLEVsrafgdrqfkkghcisFYSATKSIRNIFILLCLATFELLVRFLEI
msesetqeqqqkpkregdfddfnLIAKKSKIEKVNENEEEAARAQIMHKQIDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSivdgsnnhldelsslkaivVTRVHKAIypqerariqksggtvssngrlqGRLEVsrafgdrqfkKGHCISFYSATKSIRNIFILLCLATFELLVRFLEI
MSESETQEQQQKPKREGDFDDFNLIAKKSKIEKVNENEEEAARAQIMHKQIDFVEIEADAAEDKGSRHTMEdasvvlvdassdsPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGHCISFYSATKSIRNIFILLCLATFELLVRFLEI
**************************************************IDFV*********************************LRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQ**********************EVSRAFGDRQFKKGHCISFYSATKSIRNIFILLCLATFELLVRFL**
******************************************************EIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRFRKTDESLLQESVS*GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGHCISFYSATKSIRNIFILLCLATFELLVRFL**
****************GDFDDFNLIAKKSKIEKVNENEEEAARAQIMHKQIDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGHCISFYSATKSIRNIFILLCLATFELLVRFLEI
*************************************EEEAARAQIMHKQIDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGHCISFYSATKSIRNIFILLCLATFELLVRFLEI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
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MSESETQEQQQKPKREGDFDDFNLIAKKSKIEKVNENEEEAARxxxxxxxxxxxxxxxxxxxxxGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPRFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGHCISFYSATKSIRNIFILLCLATFELLVRFLEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
Q9LMT1351 Probable protein phosphat no no 0.833 0.643 0.606 6e-77
Q0J2R1367 Probable protein phosphat yes no 0.756 0.558 0.645 2e-75
Q0IIF0370 Integrin-linked kinase-as yes no 0.852 0.624 0.310 8e-28
Q9H0C8392 Integrin-linked kinase-as yes no 0.852 0.589 0.310 3e-27
Q9Z1Z6392 Integrin-linked kinase-as yes no 0.848 0.586 0.309 4e-27
Q8R0F6392 Integrin-linked kinase-as yes no 0.848 0.586 0.309 4e-27
Q8LAY8 354 Probable protein phosphat no no 0.583 0.446 0.359 4e-18
Q0JL75377 Probable protein phosphat no no 0.571 0.411 0.338 1e-17
Q5Z6F5327 Probable protein phosphat no no 0.583 0.483 0.343 4e-17
Q9SLA1392 Probable protein phosphat no no 0.575 0.397 0.359 5e-17
>sp|Q9LMT1|P2C08_ARATH Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2 Back     alignment and function desciption
 Score =  287 bits (734), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 154/254 (60%), Positives = 178/254 (70%), Gaps = 28/254 (11%)

Query: 35  NENEEEAARAQIMHKQIDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFA 94
           N   EE   + +  ++ +F+ +EAD AEDKG+RHTMED  VVL DAS D P  LRCAHFA
Sbjct: 53  NREAEEDKPSFVSEEKKEFL-VEADVAEDKGARHTMEDVWVVLPDASLDFPGTLRCAHFA 111

Query: 95  IFDGHGGRLAAEYAQKRLHANVISAGLPR---------------FRKTDESLLQESVSGG 139
           I+DGHGGRLAAE+A+K LH NV+SAGLPR               FRKTDE LLQ+SVSGG
Sbjct: 112 IYDGHGGRLAAEFAKKHLHLNVLSAGLPRELLDVKVAKKAILEGFRKTDELLLQKSVSGG 171

Query: 140 WQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 199
           WQDGATAVC+WIL + VFVANIGDAKAV+ARSS  +   NH +  + LKAIV+TR HKAI
Sbjct: 172 WQDGATAVCVWILDQKVFVANIGDAKAVLARSSTTNELGNHTEAGNPLKAIVLTREHKAI 231

Query: 200 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGHCISFYSATKSIR-------- 251
           YPQER+RIQKSGG +SSNGRLQGRLEVSRAFGDR FKK       SAT  I         
Sbjct: 232 YPQERSRIQKSGGVISSNGRLQGRLEVSRAFGDRHFKKFGV----SATPDIHAFELTERE 287

Query: 252 NIFILLCLATFELL 265
           N  IL C   +E+ 
Sbjct: 288 NFMILGCDGLWEVF 301

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q0J2R1|P2C67_ORYSJ Probable protein phosphatase 2C 67 OS=Oryza sativa subsp. japonica GN=Os09g0314400 PE=2 SV=1 Back     alignment and function description
>sp|Q0IIF0|ILKAP_BOVIN Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1 Back     alignment and function description
>sp|Q9H0C8|ILKAP_HUMAN Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1 Back     alignment and function description
>sp|Q9Z1Z6|ILKAP_RAT Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1 Back     alignment and function description
>sp|Q8R0F6|ILKAP_MOUSE Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1 Back     alignment and function description
>sp|Q8LAY8|P2C69_ARATH Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1 Back     alignment and function description
>sp|Q0JL75|P2C07_ORYSJ Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2 Back     alignment and function description
>sp|Q5Z6F5|P2C59_ORYSJ Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1 Back     alignment and function description
>sp|Q9SLA1|P2C22_ARATH Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
449497544348 PREDICTED: probable protein phosphatase 0.922 0.718 0.596 4e-82
449439101348 PREDICTED: probable protein phosphatase 0.922 0.718 0.596 6e-82
225456039 378 PREDICTED: probable protein phosphatase 0.749 0.537 0.710 4e-81
357500131321 hypothetical protein MTR_6g081850 [Medic 0.863 0.728 0.598 4e-78
255558671349 protein phosphatase 2c, putative [Ricinu 0.870 0.676 0.586 2e-76
224133162266 predicted protein [Populus trichocarpa] 0.693 0.706 0.710 2e-75
145323936305 putative protein phosphatase 2C 8 [Arabi 0.837 0.744 0.607 2e-75
297844754341 hypothetical protein ARALYDRAFT_312763 [ 0.929 0.739 0.559 3e-75
18394565351 putative protein phosphatase 2C 8 [Arabi 0.833 0.643 0.606 4e-75
9719738341 Contains similarity to protein phosphata 0.833 0.662 0.606 4e-75
>gi|449497544|ref|XP_004160432.1| PREDICTED: probable protein phosphatase 2C 8-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 170/285 (59%), Positives = 202/285 (70%), Gaps = 35/285 (12%)

Query: 3   ESETQEQQQKPKREGDFDDFNLIAKKSK------------IEKVNENEEEAARAQIMHKQ 50
           E ET + + K KR  D +D ++  KK K            +E VN +EE     +++ + 
Sbjct: 10  EEETSKLEPKSKRGADVEDADVTVKKFKTQAAADETGARNLEAVNGDEE----LKVIKRD 65

Query: 51  IDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQK 110
           ++FV IEADAAEDKGSRHTMEDA V+L+DAS D P  LRCAHFAI+DGHGGRLAAE+AQK
Sbjct: 66  VEFV-IEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEHAQK 124

Query: 111 RLHANVISAGLPR---------------FRKTDESLLQESVSGGWQDGATAVCIWILGRT 155
            L  NV+S+GLPR               FRKTDESLLQES +GGWQDGATAVC+W+LG+T
Sbjct: 125 HLQKNVLSSGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQT 184

Query: 156 VFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVS 215
           VFVAN+GDAKAVVARS   D S  + +  SSLKAIV+TR HKAIYPQERARIQK+GG V 
Sbjct: 185 VFVANVGDAKAVVARSLTTDKSTTNSNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVG 244

Query: 216 SNGRLQGRLEVSRAFGDRQFKKGHCIS---FYSATKSIRNIFILL 257
           SNGRLQGRLEVSRAFGDRQFKK   I+    +S   + R  FI+L
Sbjct: 245 SNGRLQGRLEVSRAFGDRQFKKLGVIATPDIHSFELTDREHFIIL 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449439101|ref|XP_004137326.1| PREDICTED: probable protein phosphatase 2C 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225456039|ref|XP_002277457.1| PREDICTED: probable protein phosphatase 2C 8 [Vitis vinifera] gi|297734261|emb|CBI15508.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357500131|ref|XP_003620354.1| hypothetical protein MTR_6g081850 [Medicago truncatula] gi|355495369|gb|AES76572.1| hypothetical protein MTR_6g081850 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255558671|ref|XP_002520360.1| protein phosphatase 2c, putative [Ricinus communis] gi|223540458|gb|EEF42026.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224133162|ref|XP_002321498.1| predicted protein [Populus trichocarpa] gi|222868494|gb|EEF05625.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|145323936|ref|NP_001077557.1| putative protein phosphatase 2C 8 [Arabidopsis thaliana] gi|332191545|gb|AEE29666.1| putative protein phosphatase 2C 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844754|ref|XP_002890258.1| hypothetical protein ARALYDRAFT_312763 [Arabidopsis lyrata subsp. lyrata] gi|297336100|gb|EFH66517.1| hypothetical protein ARALYDRAFT_312763 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18394565|ref|NP_564045.1| putative protein phosphatase 2C 8 [Arabidopsis thaliana] gi|226739232|sp|Q9LMT1.2|P2C08_ARATH RecName: Full=Probable protein phosphatase 2C 8; Short=AtPP2C08 gi|109946401|gb|ABG48379.1| At1g18030 [Arabidopsis thaliana] gi|332191544|gb|AEE29665.1| putative protein phosphatase 2C 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9719738|gb|AAF97840.1|AC034107_23 Contains similarity to protein phosphatase 2C from Rattus norvegicus gb|AF095927 and contains a protein phosphatase 2C PF|00481 domain. ESTs gb|N95912, gb|AI993625 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
TAIR|locus:2194035351 AT1G18030 [Arabidopsis thalian 0.745 0.575 0.628 1.8e-64
UNIPROTKB|Q0IIF0370 ILKAP "Integrin-linked kinase- 0.394 0.289 0.378 9.6e-26
UNIPROTKB|F1SIU8392 ILKAP "Uncharacterized protein 0.394 0.272 0.378 1.1e-25
UNIPROTKB|F1SJH8293 LOC100737148 "Uncharacterized 0.394 0.365 0.378 2.7e-25
UNIPROTKB|E1BYA9392 ILKAP "Uncharacterized protein 0.413 0.285 0.370 5.2e-25
UNIPROTKB|Q9H0C8392 ILKAP "Integrin-linked kinase- 0.394 0.272 0.369 7e-25
UNIPROTKB|E2RS11393 ILKAP "Uncharacterized protein 0.394 0.272 0.369 7.1e-25
RGD|620128392 Ilkap "integrin-linked kinase- 0.394 0.272 0.369 1.4e-24
UNIPROTKB|Q9Z1Z6392 Ilkap "Integrin-linked kinase- 0.394 0.272 0.369 1.4e-24
MGI|MGI:1914694392 Ilkap "integrin-linked kinase- 0.394 0.272 0.369 1.8e-24
TAIR|locus:2194035 AT1G18030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 137/218 (62%), Positives = 159/218 (72%)

Query:    35 NENEEEAARAQIMHKQIDFVEIEADAAEDKGSRHTMEXXXXXXXXXXXXXPPNLRCAHFA 94
             N   EE   + +  ++ +F+ +EAD AEDKG+RHTME             P  LRCAHFA
Sbjct:    53 NREAEEDKPSFVSEEKKEFL-VEADVAEDKGARHTMEDVWVVLPDASLDFPGTLRCAHFA 111

Query:    95 IFDGHGGRLAAEYAQKRLHANVISAGLPR---------------FRKTDESLLQESVSGG 139
             I+DGHGGRLAAE+A+K LH NV+SAGLPR               FRKTDE LLQ+SVSGG
Sbjct:   112 IYDGHGGRLAAEFAKKHLHLNVLSAGLPRELLDVKVAKKAILEGFRKTDELLLQKSVSGG 171

Query:   140 WQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 199
             WQDGATAVC+WIL + VFVANIGDAKAV+ARSS  +   NH +  + LKAIV+TR HKAI
Sbjct:   172 WQDGATAVCVWILDQKVFVANIGDAKAVLARSSTTNELGNHTEAGNPLKAIVLTREHKAI 231

Query:   200 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKK 237
             YPQER+RIQKSGG +SSNGRLQGRLEVSRAFGDR FKK
Sbjct:   232 YPQERSRIQKSGGVISSNGRLQGRLEVSRAFGDRHFKK 269
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
UNIPROTKB|Q0IIF0 ILKAP "Integrin-linked kinase-associated serine/threonine phosphatase 2C" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIU8 ILKAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJH8 LOC100737148 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYA9 ILKAP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H0C8 ILKAP "Integrin-linked kinase-associated serine/threonine phosphatase 2C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RS11 ILKAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|620128 Ilkap "integrin-linked kinase-associated serine/threonine phosphatase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z1Z6 Ilkap "Integrin-linked kinase-associated serine/threonine phosphatase 2C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914694 Ilkap "integrin-linked kinase-associated serine/threonine phosphatase 2C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017748001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (378 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 8e-37
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 8e-32
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 6e-31
PLN03145365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 3e-22
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 1e-19
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 1e-11
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  130 bits (329), Expect = 8e-37
 Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 38/195 (19%)

Query: 61  AEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAG 120
           ++  G R T EDA V+  +       N     F +FDGHGG  A E+A K L   ++   
Sbjct: 6   SDKGGDRKTNEDAVVIKPNL-----NNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEEL 60

Query: 121 LPR---------------FRKTDESLLQESVS--GGWQDGATAVCIWILGRTVFVANIGD 163
                             F + DE +L+E+       + G TAV   I G  ++VAN+GD
Sbjct: 61  EETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGD 120

Query: 164 AKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGR 223
           ++AV+ R+                +A+ +T+ HK +  +ER RI+K+GG V SNGR+ G 
Sbjct: 121 SRAVLCRNG---------------EAVQLTKDHKPVNEEERERIEKAGGRV-SNGRVPGV 164

Query: 224 LEVSRAFGDRQFKKG 238
           L V+RA GD   K G
Sbjct: 165 LAVTRALGDFDLKPG 179

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
KOG0697 379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
PLN03145365 Protein phosphatase 2c; Provisional 100.0
PTZ00224 381 protein phosphatase 2C; Provisional 100.0
KOG0699542 consensus Serine/threonine protein phosphatase [Si 100.0
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.97
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.96
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.96
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.92
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.68
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.67
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.47
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.29
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 98.55
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 98.22
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 85.89
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-44  Score=307.38  Aligned_cols=198  Identities=31%  Similarity=0.499  Sum_probs=169.4

Q ss_pred             cceeeEEEEEeccCCCCCCCCceEEEecCCCCCCCCCCceeEEEEEcCCCChHHHHHHHHHHHHHHHHccC-------ch
Q 024187           51 IDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL-------PR  123 (271)
Q Consensus        51 ~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lfgVfDGHgG~~as~~a~~~l~~~l~~~~~-------~~  123 (271)
                      .....+.||.++++|||..|||++.+.-.++.   +-.+++||||||||.|+.+|.+++++|.+.|.....       ..
T Consensus        17 G~GNglryg~SSMQGWR~eMEDah~A~~~l~~---~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gs   93 (379)
T KOG0697|consen   17 GEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPS---PLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGS   93 (379)
T ss_pred             CcCCceeeeeccccchhhhhhhhhhhhhcCCC---CccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCc
Confidence            34567899999999999999999998766643   334679999999999999999999999998875311       10


Q ss_pred             -----------HHHHHHHHHHhh--hcCCCCCCCeEEEEEEeCCeEEEEEeCcceEEEEeeccCCCCCCCccccCceeEE
Q 024187          124 -----------FRKTDESLLQES--VSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAI  190 (271)
Q Consensus       124 -----------f~~~d~~~~~~~--~~~~~~~GsTa~~~~i~~~~l~vanvGDSravl~~~~~~~g~~~~~~~~~~~~~~  190 (271)
                                 |+++|+.+....  .....++||||+++++.+.++|++|+|||||+|||++               .+.
T Consensus        94 v~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng---------------~~~  158 (379)
T KOG0697|consen   94 VENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG---------------EVV  158 (379)
T ss_pred             HHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCC---------------ceE
Confidence                       788887766533  4455679999999999999999999999999999999               999


Q ss_pred             ecCCCCCCCCHhHHHHHHHcCCEEeeCCcccCceeccccccccCCccCc--------eEE---EEEEEeCCCCeEEEEec
Q 024187          191 VVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGH--------CIS---FYSATKSIRNIFILLCL  259 (271)
Q Consensus       191 ~LT~dH~~~~~~E~~RI~~~gg~v~~~~r~~g~l~vtRalGd~~~k~~~--------vi~---i~~~~l~~~d~flila~  259 (271)
                      .-|.||+|.+|.|++||+.+||.|.- .|++|.|||||||||++||..+        |++   |....-...|+|||+||
T Consensus       159 f~TqDHKP~~p~EkeRIqnAGGSVMI-qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlAC  237 (379)
T KOG0697|consen  159 FSTQDHKPYLPKEKERIQNAGGSVMI-QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLAC  237 (379)
T ss_pred             EeccCCCCCChHHHHHHhcCCCeEEE-EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEc
Confidence            99999999999999999999999984 5999999999999999999753        333   67777777888999998


Q ss_pred             -CchHHhhh
Q 024187          260 -ATFELLVR  267 (271)
Q Consensus       260 -Gl~d~l~d  267 (271)
                       |+||+|+|
T Consensus       238 DGIwDVMtn  246 (379)
T KOG0697|consen  238 DGIWDVMTN  246 (379)
T ss_pred             cchhhhccc
Confidence             99999987

>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 5e-15
3fxj_A 390 Crystal Structure Of Human Protein Phosphatase 1a ( 6e-11
1a6q_A 382 Crystal Structure Of The Protein SerineTHREONINE PH 6e-11
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 9e-10
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 3e-09
3nmv_B324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 5e-09
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 5e-09
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 6e-09
4da1_A389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 2e-07
2iq1_A274 Crystal Structure Of Human Ppm1k Length = 274 4e-07
2isn_A364 Crystal Structure Of A Phosphatase From A Pathogeni 2e-05
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 3e-05
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 3e-05
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 3e-05
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 3e-05
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 3e-05
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 3e-05
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure 
Iteration: 1

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 42/175 (24%)
Query: 89  RCAHFAIFDGHGGRLAAEYAQKRLHA---NVISAGLPRFRKT--------DESLLQESV- 136
           +C+ FA++DGHGG   A+Y    L      V + G   F K         D +LLQE V 
Sbjct: 50  QCSFFAVYDGHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKVI 109
Query: 137 ------SG---------GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHL 181
                 SG         G   G TAV   + G+ ++VAN GD++ VV R+          
Sbjct: 110 EELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNG--------- 160
Query: 182 DELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFK 236
                 KA+ ++  HK     E  RI+K+GG V+ +GR+ G L +SRA GD  +K
Sbjct: 161 ------KALEMSFDHKPEDTVEYQRIEKAGGRVTLDGRVNGGLNLSRAIGDHGYK 209
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii Length = 364 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 9e-47
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 5e-44
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 3e-43
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 4e-43
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 5e-42
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 1e-40
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 1e-39
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 1e-37
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 1e-31
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 8e-28
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 1e-26
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 9e-22
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 2e-19
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 7e-06
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
 Score =  157 bits (399), Expect = 9e-47
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 48/205 (23%)

Query: 60  AAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANV--- 116
           ++  +G R + EDA   +++          C+ FA++DGHGG   A+Y    L   +   
Sbjct: 27  SSSMQGWRISQEDAHNCILNFDDQ------CSFFAVYDGHGGAEVAQYCSLHLPTFLKTV 80

Query: 117 -------ISAGLPR-FRKTDESLLQESV----------------SGGWQDGATAVCIWIL 152
                      L   F   D +LLQE V                  G   G TAV   + 
Sbjct: 81  EAYGRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLH 140

Query: 153 GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGG 212
           G+ ++VAN GD++ VV R    +G           KA+ ++  HK     E  RI+K+GG
Sbjct: 141 GKDLYVANAGDSRCVVCR----NG-----------KALEMSFDHKPEDTVEYQRIEKAGG 185

Query: 213 TVSSNGRLQGRLEVSRAFGDRQFKK 237
            V+ +GR+ G L +SRA GD  +K 
Sbjct: 186 RVTLDGRVNGGLNLSRAIGDHGYKM 210
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.97
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.97
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.97
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.96
3rnr_A211 Stage II sporulation E family protein; structural 99.94
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.4
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.31
3f79_A255 Probable two-component response regulator; adaptor 98.88
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 98.76
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 97.51
3eq2_A394 Probable two-component response regulator; adaptor 96.66
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
Probab=100.00  E-value=3.4e-41  Score=303.90  Aligned_cols=193  Identities=31%  Similarity=0.494  Sum_probs=162.0

Q ss_pred             eeEEEEEeccCCCCCCCCceEEEecCCCCCCCCCCceeEEEEEcCCCChHHHHHHHHHHHHHHHHcc-----Cc------
Q 024187           54 VEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAG-----LP------  122 (271)
Q Consensus        54 ~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lfgVfDGHgG~~as~~a~~~l~~~l~~~~-----~~------  122 (271)
                      ..+.+|.++.+|+|++|||++++..++      .....||+|||||||+.+|+++++++++.|.+..     ..      
T Consensus        21 ~~~~~~~~s~~G~R~~nED~~~~~~~~------~~~~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~l~~   94 (304)
T 2i0o_A           21 EFLASGSSSMQGWRISQEDAHNCILNF------DDQCSFFAVYDGHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKE   94 (304)
T ss_dssp             SSEEEEEEEEEESSSCCCEEEEEEEEE------ETTEEEEEEEECSSCSHHHHHHHHHHHHHHHHSHHHHTTCHHHHHHH
T ss_pred             CceEEEEeecCCCCCCccCEEEEEecc------CCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Confidence            468899999999999999999886432      1246899999999999999999999999886531     01      


Q ss_pred             hHHHHHHHHHHhh----------------hcCCCCCCCeEEEEEEeCCeEEEEEeCcceEEEEeeccCCCCCCCccccCc
Q 024187          123 RFRKTDESLLQES----------------VSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSS  186 (271)
Q Consensus       123 ~f~~~d~~~~~~~----------------~~~~~~~GsTa~~~~i~~~~l~vanvGDSravl~~~~~~~g~~~~~~~~~~  186 (271)
                      .|..+++.+.+..                ......+|||++++++.++++|+|||||||+||+|.+              
T Consensus        95 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g--------------  160 (304)
T 2i0o_A           95 AFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNG--------------  160 (304)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHHCC-----CCTTTSCEEEEEEEEEETTEEEEEEESSCEEEEEETT--------------
T ss_pred             HHHHHHHHHHhhhhHHHHhhhccccccccccCCCCCCccEEEEEEECCEEEEEEccCcEEEEEECC--------------
Confidence            1666776654321                1124568999999999999999999999999999998              


Q ss_pred             eeEEecCCCCCCCCHhHHHHHHHcCCEEeeCCcccCceeccccccccCCccC--------ceEE---EEEEEeCCCCeEE
Q 024187          187 LKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKG--------HCIS---FYSATKSIRNIFI  255 (271)
Q Consensus       187 ~~~~~LT~dH~~~~~~E~~RI~~~gg~v~~~~r~~g~l~vtRalGd~~~k~~--------~vi~---i~~~~l~~~d~fl  255 (271)
                       ++.+||.||+|.++.|++||.++||.+.+++|++|.+++||||||..+|..        .|++   +..++|.++|.||
T Consensus       161 -~~~~LT~DH~~~~~~e~~rI~~~gg~v~~~~rv~g~l~ltRalGd~~~k~~~~l~~~~~~v~~~pdi~~~~l~~~D~fl  239 (304)
T 2i0o_A          161 -KALEMSFDHKPEDTVEYQRIEKAGGRVTLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITVGPEDEFM  239 (304)
T ss_dssp             -EEEECCCCCCTTSHHHHHHHHHTTCCBCTTSCBTTSCSCSBCEECGGGCCCTTSCGGGSSSBCCCEEEEEECCTTEEEE
T ss_pred             -EEEEcCCCcCCcCHHHHHHHHhCCCEEEeCCeEcCceeccccccCHHHccCccCCccCCeEEeeCeEEEEEcCCCCeEE
Confidence             999999999999999999999999999988999999999999999988752        2222   8889999999997


Q ss_pred             EEec-CchHHhhh
Q 024187          256 LLCL-ATFELLVR  267 (271)
Q Consensus       256 ila~-Gl~d~l~d  267 (271)
                      |+|| ||||+|++
T Consensus       240 lL~SDGl~d~l~~  252 (304)
T 2i0o_A          240 VLACDGIWNFMTS  252 (304)
T ss_dssp             EEECHHHHTTCCH
T ss_pred             EEECcCccccCCH
Confidence            6666 99999876
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 271
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 2e-18
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 1e-05
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 2e-18
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 49/235 (20%)

Query: 60  AAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISA 119
            +  +G R  MEDA   ++   S        + FA++DGH G   A+Y  + L  ++ + 
Sbjct: 25  LSSMQGWRVEMEDAHTAVIGLPSGLE---SWSFFAVYDGHAGSQVAKYCCEHLLDHITNN 81

Query: 120 GLPRFRKTDESL--------------------LQESVSGGWQDGATAVCIWILGRTVFVA 159
              +      S+                    + E   G  + G+TAV + I  +  +  
Sbjct: 82  QDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFI 141

Query: 160 NIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGR 219
           N GD++ ++ R+  V                  T+ HK   P E+ RIQ +GG+V    R
Sbjct: 142 NCGDSRGLLCRNRKV---------------HFFTQDHKPSNPLEKERIQNAGGSV-MIQR 185

Query: 220 LQGRLEVSRAFGDRQFKKG----------HCISFYSATKSIRNIFILLCLATFEL 264
           + G L VSRA GD  +K                     +        + LA   +
Sbjct: 186 VNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGI 240
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 100.0
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-44  Score=317.49  Aligned_cols=195  Identities=29%  Similarity=0.423  Sum_probs=163.8

Q ss_pred             eeEEEEEeccCCCCCCCCceEEEecCCCCCCCCCCceeEEEEEcCCCChHHHHHHHHHHHHHHHHccCc-----------
Q 024187           54 VEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP-----------  122 (271)
Q Consensus        54 ~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lfgVfDGHgG~~as~~a~~~l~~~l~~~~~~-----------  122 (271)
                      ..+.||+++.+|+|++|||++++..++.   ....+..||||||||||+.||++++++|+..|.+....           
T Consensus        19 ~~~~~g~~s~~G~R~~~ED~~~~~~~~~---~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~   95 (295)
T d1a6qa2          19 NGLRYGLSSMQGWRVEMEDAHTAVIGLP---SGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVEN   95 (295)
T ss_dssp             TTEEEEEEEEEETSSSCCEEEEEEEEET---TTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHH
T ss_pred             CceEEEEEeCccCCCcccCeeEEEcccC---CCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhccccccchHHH
Confidence            4678999999999999999999887652   23345789999999999999999999999998653110           


Q ss_pred             -------hHHHHHHHHHHhh--hcCCCCCCCeEEEEEEeCCeEEEEEeCcceEEEEeeccCCCCCCCccccCceeEEecC
Q 024187          123 -------RFRKTDESLLQES--VSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVT  193 (271)
Q Consensus       123 -------~f~~~d~~~~~~~--~~~~~~~GsTa~~~~i~~~~l~vanvGDSravl~~~~~~~g~~~~~~~~~~~~~~~LT  193 (271)
                             .|..+++.+....  ......+|||++++++.++++|+|||||||+||++++               .+++||
T Consensus        96 ~~~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~---------------~~~~lT  160 (295)
T d1a6qa2          96 VKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNR---------------KVHFFT  160 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETT---------------EEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecc---------------cceeec
Confidence                   0666666665433  2345568999999999999999999999999999998               999999


Q ss_pred             CCCCCCCHhHHHHHHHcCCEEeeCCcccCceeccccccccCCccCc--------eEE---EEEEEeC-CCCeEEEEec-C
Q 024187          194 RVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKGH--------CIS---FYSATKS-IRNIFILLCL-A  260 (271)
Q Consensus       194 ~dH~~~~~~E~~RI~~~gg~v~~~~r~~g~l~vtRalGd~~~k~~~--------vi~---i~~~~l~-~~d~flila~-G  260 (271)
                      .||+|.++.|++||+++||.+. .+|++|.|++||||||+.+|..+        +++   +..+++. ++|.|||+|| |
T Consensus       161 ~dH~~~~~~E~~Ri~~~gg~v~-~~r~~g~l~~tRa~Gd~~~k~~~~~~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDG  239 (295)
T d1a6qa2         161 QDHKPSNPLEKERIQNAGGSVM-IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDG  239 (295)
T ss_dssp             CCCCTTSHHHHHHHHHTTCCEE-TTEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEEECHH
T ss_pred             cccCcccHHHHhhHhhcCCccc-ccccCCceeeeeccCcHHhhhccccCcccccccccccceEEEeecccceeEeeecCc
Confidence            9999999999999999999997 67999999999999999998543        444   7778876 5678888777 9


Q ss_pred             chHHhhh
Q 024187          261 TFELLVR  267 (271)
Q Consensus       261 l~d~l~d  267 (271)
                      |||+|++
T Consensus       240 l~d~l~~  246 (295)
T d1a6qa2         240 IWDVMGN  246 (295)
T ss_dssp             HHTTSCH
T ss_pred             ccccCCH
Confidence            9999986
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure