BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024190
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 37/206 (17%)
Query: 68 PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
PQ +LKE E DKDDESL K+K+ LLG D + + P V + L++V APG I
Sbjct: 7 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG--PI 62
Query: 125 VLAVPEDGKP-AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYAR 183
+ + D + LKEGS+Y +K F+V+ +IVSGLKY ++ G+K
Sbjct: 63 TMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK-------- 114
Query: 184 THANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSA 243
VD A M+G++ P+PE Y P E P GM ARG+Y
Sbjct: 115 ---------------------VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHN 153
Query: 244 RTKFLDDDNKCYLEINYSFDIRKEWA 269
++ F DDD + +L ++ I+KEW
Sbjct: 154 KSFFTDDDKQDHLSWEWNLSIKKEWG 179
>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
pdb|1FST|B Chain B, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
Length = 182
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 35/203 (17%)
Query: 69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
Q +++E E DKDDESLRK+KE LLG V + P V + L++V APG ++
Sbjct: 10 QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTH 185
L + + F LKEG +Y +K +F V+ IVSG+KY ++AG+
Sbjct: 68 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGV----------- 115
Query: 186 ANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSART 245
++D+ M+G++ P+ E Y P E P GM ARGSYS ++
Sbjct: 116 ------------------AIDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKS 157
Query: 246 KFLDDDNKCYLEINYSFDIRKEW 268
+F DDD +L ++ I+K+W
Sbjct: 158 RFTDDDKTDHLSWEWNLTIKKDW 180
>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 204
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 35/203 (17%)
Query: 69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
Q +++E E DKDDESLRK+KE LLG V + P V + L++V APG ++
Sbjct: 32 QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTRLTLVCSTAPGPLELD 89
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTH 185
L + + F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 90 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY---- 144
Query: 186 ANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSART 245
M+G++ P+ E Y P E P GM ARGSY+ ++
Sbjct: 145 -------------------------MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKS 179
Query: 246 KFLDDDNKCYLEINYSFDIRKEW 268
+F DDD +L ++ I+KEW
Sbjct: 180 RFTDDDRTDHLSWEWNLTIKKEW 202
>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 219
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 35/203 (17%)
Query: 69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
Q +++E E DKDDESLRK+KE LLG V + P V + L++V APG ++
Sbjct: 47 QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTRLTLVCSTAPGPLELD 104
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTH 185
L + + F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 105 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY---- 159
Query: 186 ANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSART 245
M+G++ P+ E Y P E P GM ARGSY+ ++
Sbjct: 160 -------------------------MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKS 194
Query: 246 KFLDDDNKCYLEINYSFDIRKEW 268
+F DDD +L ++ I+KEW
Sbjct: 195 RFTDDDRTDHLSWEWNLTIKKEW 217
>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|F Chain F, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1HH4|D Chain D, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|E Chain E, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 204
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 35/203 (17%)
Query: 69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
Q +++E E DKDDESLRK+KE LLG V + P V + L++V APG ++
Sbjct: 32 QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTH 185
L + + F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 90 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY---- 144
Query: 186 ANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSART 245
M+G++ P+ E Y P E P GM ARGSYS ++
Sbjct: 145 -------------------------MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKS 179
Query: 246 KFLDDDNKCYLEINYSFDIRKEW 268
+F DDD +L ++ I+K+W
Sbjct: 180 RFTDDDKTDHLSWEWNLTIKKDW 202
>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple
Mutant
Length = 139
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++AG+
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGV------------------------ 72
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
++D+ M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 73 -----AIDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
Query: 259 NYSFDIRKEW 268
++F I+K+W
Sbjct: 128 EWNFTIKKDW 137
>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant
pdb|2JHW|B Chain B, Crystal Structure Of Rhogdi E155a, E157a Mutant
Length = 138
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 81 ------------MVGSYGPRAEAYAFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 129 EWNLTIKKDW 138
>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|B Chain B, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|C Chain C, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|D Chain D, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
Length = 139
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 79
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 80 ------------MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
Query: 259 NYSFDIRKEW 268
++ IR++W
Sbjct: 128 EWNLTIRRDW 137
>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant
pdb|1FT3|B Chain B, Crystal Structure Of Truncated Rhogdi K141a Mutant
Length = 139
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK----------------------- 73
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
+D+ M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 74 ------IDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 128 EWNLTIKKDW 137
>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant
pdb|2JHZ|B Chain B, Crystal Structure Of Rhogdi E155s, E157s Mutant
Length = 138
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 81 ------------MVGSYGPRAESYSFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 129 EWNLTIKKDW 138
>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20
Structures
pdb|1GDF|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr,
Minimized Average Structure
Length = 145
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 43 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 85
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ E Y P E P GM ARGSY+ +++F DDD +L
Sbjct: 86 ------------MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSW 133
Query: 259 NYSFDIRKEW 268
++ I+KEW
Sbjct: 134 EWNLTIKKEW 143
>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHX|B Chain B, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHY|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
Length = 138
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 81 ------------MVGSYGPRAEHYHFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 129 EWNLTIKKDW 138
>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|B Chain B, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|C Chain C, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|D Chain D, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
Length = 138
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGV------------------------ 73
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
++D+ M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 74 -----TIDTTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 129 EWNLTIKKDW 138
>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
pdb|1KMT|B Chain B, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
Length = 141
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 39 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 81
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ Y P E P GM ARGSYS +++F DDD +L
Sbjct: 82 ------------MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 129
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 130 EWNLTIKKDW 139
>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHU|B Chain B, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHV|A Chain A, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|B Chain B, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|C Chain C, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|D Chain D, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|E Chain E, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|F Chain F, Crystal Structure Of Rhogdi E154a,e155a Mutant
Length = 138
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ Y P E P GM ARGSYS +++F DDD +L
Sbjct: 81 ------------MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 129 EWNLTIKKDW 138
>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant
Length = 138
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+ T Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 81 ------------MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 129 EWNLTIKKDW 138
>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
pdb|1FT0|B Chain B, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
Length = 139
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y + +F V+ IVSG+KY ++ G+K +T Y
Sbjct: 37 FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 79
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 80 ------------MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 128 EWNLTIKKDW 137
>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant
Length = 138
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV------------------------ 73
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
+D M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 74 -----YIDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 129 EWNLTIKKDW 138
>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
pdb|2BXW|B Chain B, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
Length = 141
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+
Sbjct: 39 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGV------------------------ 74
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
+D M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 75 -----YIDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 129
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 130 EWNLTIKKDW 139
>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|B Chain B, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|C Chain C, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
Length = 145
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
F LKEG +Y +K +F V+ IVSG KY ++ G+K +T Y
Sbjct: 44 FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYX---------------- 87
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
+G++ P+ E Y P E P G ARGSYS +++F DDD +L
Sbjct: 88 -------------VGSYGPRAEEYEFLTPVEEAPKGXLARGSYSIKSRFTDDDKTDHLSW 134
Query: 259 NYSFDIRKEW 268
++ I+K+W
Sbjct: 135 EWNLTIKKDW 144
>pdb|1RM6|B Chain B, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|E Chain E, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|B Chain B, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|E Chain E, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 324
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 110 RILSLSIVAPGRNDIVLAVPEDGKPAGNW-FTLKEGSKYSLKFTFEVSNNIVSGLKYTNT 168
RI L + G N L VP D GNW E ++ T V ++G+KY
Sbjct: 248 RIAGLRVAITGSNSAPLMVPVDALLGGNWDDAAAETLAQLVRKTSNVLRTTITGVKYRRR 307
Query: 169 V 169
V
Sbjct: 308 V 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,986,707
Number of Sequences: 62578
Number of extensions: 328257
Number of successful extensions: 777
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 28
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)