BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024190
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1
PE=1 SV=1
Length = 240
Score = 313 bits (803), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 155/224 (69%), Positives = 174/224 (77%), Gaps = 31/224 (13%)
Query: 48 TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
++ T+EE+DDD + +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD NIGETL+P
Sbjct: 48 SLCATEEEEDDDSK--LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDP 105
Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
EVRI SL+I++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF V+NNIVSGL+YTN
Sbjct: 106 EVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTN 165
Query: 168 TVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMP 227
TVWK G+K VD AK+MLGTFSPQ EPY H MP
Sbjct: 166 TVWKTGVK-----------------------------VDRAKEMLGTFSPQLEPYNHVMP 196
Query: 228 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 271
EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW A+
Sbjct: 197 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWPAL 240
>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1
SV=3
Length = 200
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 38/224 (16%)
Query: 51 ETDEEDDD-DREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEV 109
+ +E DDD D + + + PQ +LKE E DKDDESL K+K+ LLG V + + P V
Sbjct: 9 QLEEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNV 66
Query: 110 RILSLSIV---APGRNDIVLAVPEDGKP-AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKY 165
+ LS+V APG I + + D + + F LKEG +Y +K F+V+ +IVSGLKY
Sbjct: 67 TVTRLSLVCDSAPGP--ITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKY 124
Query: 166 TNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHE 225
++ G++ VD A M+G++ P+PE Y
Sbjct: 125 VQHTYRTGMR-----------------------------VDKATFMVGSYGPRPEEYEFL 155
Query: 226 MPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 269
P E P GM ARG+Y ++ F DDD + +L ++ I+K+W
Sbjct: 156 TPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKKDWT 199
>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3
Length = 200
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 112/222 (50%), Gaps = 39/222 (17%)
Query: 54 EEDDD--DREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRI 111
EEDDD D + + + PQ +LKE E DKDDESL K+K+ LLG D + + P V +
Sbjct: 11 EEDDDELDGKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTV 68
Query: 112 LSLSIV---APGRNDIVLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
L++V APG I + + D + F LKEG +Y +K F+V+ +IVSGLKY
Sbjct: 69 TRLTLVCESAPGP--ITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQ 126
Query: 168 TVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMP 227
++ G+K VD A M+G++ P+PE Y P
Sbjct: 127 HTYRTGVK-----------------------------VDKATFMVGSYGPRPEEYEFLTP 157
Query: 228 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 269
E P GM ARG+Y ++ F DDD +L ++ I+K+W
Sbjct: 158 IEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWT 199
>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1
SV=3
Length = 201
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 37/206 (17%)
Query: 68 PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
PQ +LKE E DKDDESL K+K+ LLG D + + P V + L++V APG I
Sbjct: 28 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG--PI 83
Query: 125 VLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYAR 183
+ + D + LKEGS+Y +K F+V+ +IVSGLKY ++ G+K
Sbjct: 84 TMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK-------- 135
Query: 184 THANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSA 243
VD A M+G++ P+PE Y P E P GM ARG+Y
Sbjct: 136 ---------------------VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHN 174
Query: 244 RTKFLDDDNKCYLEINYSFDIRKEWA 269
++ F DDD + +L ++ I+KEW
Sbjct: 175 KSFFTDDDKQDHLSWEWNLSIKKEWT 200
>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3
Length = 204
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 35/218 (16%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
E ++D+ + + Q +++E E DKDDESLRK+KE LLG V + P V +
Sbjct: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTR 74
Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
L++V APG ++ L + + F LKEG +Y +K +F V+ IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 171 KAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEET 230
+ G+K +T Y M+G++ P+ E Y P E
Sbjct: 134 RKGVKIDKTDY-----------------------------MVGSYGPRAEEYEFLTPMEE 164
Query: 231 TPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
P GM ARGSY+ +++F DDD +L ++ I+KEW
Sbjct: 165 APKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 202
>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia
PE=1 SV=1
Length = 204
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 35/218 (16%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
E ++D+ + + Q +++E E DKDDESLRK+KE LLG V + P V +
Sbjct: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVIVTR 74
Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
L++V APG ++ L + + F LKEG +Y +K +F V+ IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 171 KAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEET 230
+ G+K +T Y M+G++ P+ E Y P E
Sbjct: 134 RKGVKIDKTDY-----------------------------MVGSYGPRAEEYEFLTPMEE 164
Query: 231 TPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
P GM ARGSY+ +++F DDD +L ++ I+KEW
Sbjct: 165 APKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKKEW 202
>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1
SV=3
Length = 204
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 35/218 (16%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
E ++D+ + + Q +++E E DKDDESLRK+KE LLG V + P V +
Sbjct: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVIVTR 74
Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
L++V APG ++ L + + F LKEG +Y +K +F V+ IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 171 KAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEET 230
+ G+K +T Y M+G++ P+ E Y P E
Sbjct: 134 RKGVKIDKTDY-----------------------------MVGSYGPRAEEYEFLTPMEE 164
Query: 231 TPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
P GM ARGSY+ +++F DDD +L ++ I+KEW
Sbjct: 165 APKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKKEW 202
>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA
PE=2 SV=1
Length = 204
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 41/236 (17%)
Query: 38 QEEQRTSRYVTVSETDEEDDDDREQDIQLGP--QYTLKEQIEKDKDDESLRKWKEQLLGS 95
++E + ++ +EED E + P Q +++E E DKDDESLRK+KE LLG
Sbjct: 3 EQEPTAEQLAQIAAENEED----EHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR 58
Query: 96 VDFDNIGETLEPEVRILSLSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFT 152
V + P V + L++V APG ++ L + + F LKEG +Y +K +
Sbjct: 59 VAVS--ADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKIS 115
Query: 153 FEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQML 212
F V+ IVSG+KY ++ G+K +T Y M+
Sbjct: 116 FRVNREIVSGMKYIQHTYRKGVKIDKTDY-----------------------------MV 146
Query: 213 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
G++ P+ E Y P E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 147 GSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202
>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1
SV=3
Length = 204
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 41/236 (17%)
Query: 38 QEEQRTSRYVTVSETDEEDDDDREQDIQLGP--QYTLKEQIEKDKDDESLRKWKEQLLGS 95
++E + ++ +EED E + P Q +++E E DKDDESLRK+KE LLG
Sbjct: 3 EQEPTAEQLAQIAAENEED----EHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR 58
Query: 96 VDFDNIGETLEPEVRILSLSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFT 152
V + P V + L++V APG ++ L + + F LKEG +Y +K +
Sbjct: 59 VAVS--ADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKIS 115
Query: 153 FEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQML 212
F V+ IVSG+KY ++ G+K +T Y M+
Sbjct: 116 FRVNREIVSGMKYIQHTYRKGVKIDKTDY-----------------------------MV 146
Query: 213 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
G++ P+ E Y P E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 147 GSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202
>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium
discoideum GN=rdiA PE=1 SV=1
Length = 197
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 41/212 (19%)
Query: 67 GPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVL 126
G ++ + ++D +DE+L+++KE LLG+ + + ++ + + I GR D +
Sbjct: 17 GKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQI--EGRPDTIY 74
Query: 127 AVPEDGKP-----AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTY 181
P D K F LKE Y + TF + ++IVSGLK TNTV++ GIK
Sbjct: 75 --PLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIK------ 126
Query: 182 ARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPE---ETTPSGMFAR 238
V + K MLG+F+PQ + P E PSGM AR
Sbjct: 127 -----------------------VSTEKHMLGSFAPQALAHSVTNPRHGWEEAPSGMLAR 163
Query: 239 GSYSARTKFLDDDNKCYLEINYSFDIRKEWAA 270
GSY+A+ F DDDN+ +L + Y+F I+ +W +
Sbjct: 164 GSYTAKVVFTDDDNEEHLSVEYAFSIKSDWKS 195
>sp|O14224|GDIR_SCHPO Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1
Length = 205
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 103/225 (45%), Gaps = 47/225 (20%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPE----- 108
E+D + + LG + +L E ++ D +DESL+KWK L G P
Sbjct: 17 EDDTFEHGPPVSLGEKKSLNEYMKMDAEDESLQKWKASL------GITGTGYSPSNDRRT 70
Query: 109 VRILSLSIVAPGRNDIVL-----AVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGL 163
V IL LS++ GR+ + + A E + G FT+KEGS++ + F V + ++SGL
Sbjct: 71 VVILKLSLLVDGRDPVDVNMEDAASVEQIRKKG--FTIKEGSEFKIGVKFRVQHEVISGL 128
Query: 164 KYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYI 223
+Y TV + G F+ VD M+G++ P PY
Sbjct: 129 RYVQTVRRRG----------------------------FV-VDKTSTMIGSYGPSETPYD 159
Query: 224 HEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
+ P+GM ARG Y A KF+DDD + E ++FD+ K W
Sbjct: 160 FTSEPDEAPTGMLARGHYEANGKFVDDDKVVHHEFVWAFDVAKSW 204
>sp|Q20496|GDIR_CAEEL Probable rho GDP-dissociation inhibitor OS=Caenorhabditis elegans
GN=rhi-1 PE=2 SV=1
Length = 191
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 36/204 (17%)
Query: 68 PQYTLKEQIEKDKDDESLRKWKEQLLGS----VDFDNIGETLEPEVRILSLSIVAPGRND 123
PQ ++ E + DK+DESL+ +K +LLG VD N L VR + L I
Sbjct: 20 PQKSIDELLNADKEDESLKVYKAKLLGQGTVIVDEKN---PLRVIVRSVELLINGKTAQS 76
Query: 124 IVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYAR 183
L+ P + ++KEGS Y L F F V I SGL Y + V ++G
Sbjct: 77 FDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSG---------- 126
Query: 184 THANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSA 243
I+V++ K M+G+++P+ E ++ P E PSGM RG Y
Sbjct: 127 -------------------ITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKYKV 167
Query: 244 RTKFLDDDNKCYLEINYSFDIRKE 267
+K DDDN YL+ ++ I KE
Sbjct: 168 YSKITDDDNNVYLDWQWTLHITKE 191
>sp|Q12434|GDIR_YEAST Rho GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RDI1 PE=1 SV=1
Length = 202
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 42/227 (18%)
Query: 50 SETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVD---FDNIGETLE 106
S+ +EE ++D+ ++ + T+ E D +DESL KWKE L S D + G+ +
Sbjct: 9 SQFEEERNNDQ---YKVSAKKTVDEYKNLDAEDESLAKWKESLGLSSDVLPLEFPGDKRK 65
Query: 107 PEVRILSLSIVAPGRNDIVLAVPEDG---KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGL 163
V+ + L +V N I + + + A + +KE S Y LK F+V + I++GL
Sbjct: 66 VVVQKIQL-LVNTEPNPITFDLTNEKTIKELASKRYKIKENSIYKLKIVFKVQHEIITGL 124
Query: 164 KYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSP--QPEP 221
+Y + KAGI +VD LG+++P + +P
Sbjct: 125 RYVQYIKKAGI-----------------------------AVDKIDDHLGSYAPNTKTKP 155
Query: 222 YIH-EMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKE 267
+ E+PE PSG ARG+YSA +KF+DDD +L +N+ +I K+
Sbjct: 156 FYEVELPESEAPSGFLARGNYSAVSKFIDDDKTNHLTLNWGVEIVKK 202
>sp|Q0II80|GDIR3_BOVIN Rho GDP-dissociation inhibitor 3 OS=Bos taurus GN=ARHGDIG PE=2 SV=1
Length = 225
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 37/202 (18%)
Query: 71 TLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIVLA 127
+L E + D DDESL K+K LLG V + +L P V++ L+++ APG IV+
Sbjct: 55 SLLEIQQLDPDDESLVKYKRALLGPV-LPAVDPSL-PNVQVTRLTLISEQAPG--PIVMD 110
Query: 128 VPEDGKPAGNW-FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHA 186
+ + N F LKEG Y +K TF+V+ IVSGLK + ++ G++
Sbjct: 111 LTGELAALKNQVFVLKEGVDYKVKITFKVNKEIVSGLKCLHHTYRHGLR----------- 159
Query: 187 NFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTK 246
VD A M+G++ P + Y P E P G RG+Y +
Sbjct: 160 ------------------VDKAVYMVGSYGPSAQEYEFVTPVEEAPRGALVRGAYVVTSF 201
Query: 247 FLDDDNKCYLEINYSFDIRKEW 268
F DDD +L + + ++W
Sbjct: 202 FTDDDRTAHLSWEWGLYVCQDW 223
>sp|Q62160|GDIR3_MOUSE Rho GDP-dissociation inhibitor 3 OS=Mus musculus GN=Arhgdig PE=2
SV=1
Length = 225
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 37/194 (19%)
Query: 79 DKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIVLAVPEDGKPA 135
D D SL K+K+ LLG I + P V++ L+++ APG I++ + D
Sbjct: 63 DPGDVSLVKYKQALLGP--LPPIMDPSLPNVQVTRLTLLTEQAPG--PIIMDLTGDLDAL 118
Query: 136 GNW-FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHS 194
N F LKEG +Y +K TF+V+ IVSGLK + ++ G++
Sbjct: 119 KNQVFVLKEGIEYKVKITFKVNKEIVSGLKCLHHTYRRGLR------------------- 159
Query: 195 YVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKC 254
VD A M+G++ P+ + Y E P G ARG Y R+ F DDD
Sbjct: 160 ----------VDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRSLFTDDDRLN 209
Query: 255 YLEINYSFDIRKEW 268
+L + + ++W
Sbjct: 210 HLSWEWHLHVCQDW 223
>sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens GN=ARHGDIG PE=2
SV=2
Length = 225
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 43/205 (20%)
Query: 71 TLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGR--NDIV 125
+L E + D DD SL K+K LLG + + +L P V++ L+++ APG D+
Sbjct: 55 SLLEIRQLDPDDRSLAKYKRVLLGPLP-PAVDPSL-PNVQVTRLTLLSEQAPGPVVMDLT 112
Query: 126 --LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYAR 183
LAV +D F LKEG Y +K +F+V IVSGLK + ++ G++ +T Y
Sbjct: 113 GDLAVLKD-----QVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVY-- 165
Query: 184 THANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSA 243
M+G++ P + Y P E P G RG Y
Sbjct: 166 ---------------------------MVGSYGPSAQEYEFVTPVEEAPRGALVRGPYLV 198
Query: 244 RTKFLDDDNKCYLEINYSFDIRKEW 268
+ F DDD +L + I ++W
Sbjct: 199 VSLFTDDDRTHHLSWEWGLCICQDW 223
>sp|P80237|GDIR1_CAVPO Rho GDP-dissociation inhibitor 1 (Fragments) OS=Cavia porcellus
GN=ARHGDIA PE=1 SV=1
Length = 111
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 187 NFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTK 246
+F + H+Y + +D M+G++ P+ E Y P E P GM AR
Sbjct: 44 SFRYIQHTY----RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLAR-------- 91
Query: 247 FLDDDNKCYLEINYSFDIRK 266
F DDD +L + I+K
Sbjct: 92 FTDDDKTDHLSGERNLTIKK 111
>sp|A4Y344|ASTD_SHEPC N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=astD PE=3
SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 205 VDSAKQM-LGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINY 260
VD+ KQ+ +G ++ QP+P++ M ET GM A A+ LD K +E+ +
Sbjct: 299 VDAVKQIKVGPWNAQPQPFMGSMISETAAKGMVA-----AQANLLDLGGKVLVELTH 350
>sp|A1RNU4|ASTD_SHESW N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella sp.
(strain W3-18-1) GN=astD PE=3 SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 205 VDSAKQM-LGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINY 260
VD+ KQ+ +G ++ QP+P++ M ET GM A A+ LD K +E+ +
Sbjct: 299 VDAVKQIKVGPWNAQPQPFMGSMISETAAKGMVA-----AQANLLDLGGKVLVELTH 350
>sp|A0KMZ8|RF1_AERHH Peptide chain release factor 1 OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=prfA PE=3
SV=1
Length = 362
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 183 RTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYS 242
R +A +++H++ + ++D+ +QML + + + EM +E P A+ ++
Sbjct: 40 REYAQLEDIVHAFQQFRQAEENLDATRQML----EEDDADLREMAQEELP---LAKATFE 92
Query: 243 ARTKFLD---------DDNKCYLEI 258
+ + L DDN CYLEI
Sbjct: 93 EQEQALQVMLLPRDPKDDNNCYLEI 117
>sp|Q0AZ86|THIE_SYNWW Thiamine-phosphate synthase OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=thiE PE=3 SV=1
Length = 209
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 71 TLKEQIEKD-KDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVP 129
+L E++ K K S+ + +E+ GS +F + +TL+ E+R L + ++ R DI LAV
Sbjct: 21 SLLEEVRKAVKGGVSMVQLREKEAGSREFYELAQTLQTELRELGVPLLINDRLDIALAVD 80
Query: 130 EDGKPAGN 137
DG G
Sbjct: 81 ADGLHLGQ 88
>sp|Q75CZ5|EFGM_ASHGO Elongation factor G, mitochondrial OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MEF1
PE=3 SV=2
Length = 757
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 14/178 (7%)
Query: 20 DEGENSNVAVGAAEPANLQEEQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKD 79
+EGEN V P LQ+ R + V D DD +I L Q +QI+
Sbjct: 251 NEGENGEVLRKGPVPEELQDLVEEKRLLLVETL--ADVDDEMAEIFLDEQEPTVQQIKDA 308
Query: 80 KDDESL-RKWKEQLLGSV--------DFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPE 130
++ RK+ L+GS D I + L +L+ ++ V +P
Sbjct: 309 IRRATIARKFTPVLMGSALANTGIQNVLDAIVDYLPEPSEVLNTALDVSNNETKVNLIPS 368
Query: 131 DGKP-AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHAN 187
P G F L+EG+ L + + G TN + G K K + R H+N
Sbjct: 369 SHHPFVGLAFKLEEGNYGQLTYIRVYQGKLKKGGYITNV--RTGKKVKVSRLVRMHSN 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,681,636
Number of Sequences: 539616
Number of extensions: 4801362
Number of successful extensions: 18582
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 17761
Number of HSP's gapped (non-prelim): 628
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)