Query 024190
Match_columns 271
No_of_seqs 141 out of 277
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 02:43:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3205 Rho GDP-dissociation i 100.0 1E-81 2.2E-86 551.6 21.6 184 55-269 15-200 (200)
2 PF02115 Rho_GDI: RHO protein 100.0 2.2E-75 4.7E-80 512.1 16.4 186 51-267 14-200 (200)
3 PF02221 E1_DerP2_DerF2: ML do 95.7 0.59 1.3E-05 36.7 12.9 103 138-264 25-134 (134)
4 cd00917 PG-PI_TP The phosphati 88.1 5 0.00011 32.4 8.8 35 141-175 24-58 (122)
5 smart00737 ML Domain involved 80.7 16 0.00035 28.5 8.4 85 142-255 22-111 (118)
6 KOG4680 Uncharacterized conser 72.2 58 0.0013 29.0 10.2 76 160-265 68-145 (153)
7 cd00258 GM2-AP GM2 activator p 56.1 1.5E+02 0.0033 26.5 10.2 39 225-265 122-160 (162)
8 PF14524 Wzt_C: Wzt C-terminal 49.2 1.2E+02 0.0026 23.3 8.0 46 106-166 10-55 (142)
9 PF00379 Chitin_bind_4: Insect 48.4 38 0.00083 23.6 4.1 29 228-261 18-46 (52)
10 PF11797 DUF3324: Protein of u 43.5 1.9E+02 0.0041 24.0 8.9 76 158-266 56-131 (140)
11 PF15043 CNRIP1: CB1 cannabino 37.5 1.6E+02 0.0034 26.5 7.1 50 107-156 5-55 (161)
12 PF15432 Sec-ASP3: Accessory S 37.3 1.2E+02 0.0025 25.9 6.1 54 140-230 49-102 (128)
13 cd00912 ML The ML (MD-2-relate 34.7 2.4E+02 0.0051 22.5 9.1 94 138-255 23-120 (127)
14 TIGR03711 acc_sec_asp3 accesso 29.1 1.5E+02 0.0033 25.6 5.6 54 140-230 60-113 (135)
15 cd00916 Npc2_like Niemann-Pick 27.6 3.4E+02 0.0073 22.1 8.8 89 137-254 22-115 (123)
16 cd07816 Bet_v1-like Ligand-bin 26.7 2.3E+02 0.0051 23.2 6.1 54 211-266 67-121 (148)
17 PHA00407 phage lambda Rz1-like 26.2 26 0.00057 28.4 0.4 12 84-95 27-38 (84)
18 PF04787 Pox_H7: Late protein 25.5 56 0.0012 28.9 2.3 24 237-260 29-53 (147)
19 PF13752 DUF4165: Domain of un 23.2 1.3E+02 0.0028 26.0 4.0 30 236-265 91-120 (124)
20 COG2372 CopC Uncharacterized p 22.5 2.7E+02 0.0058 24.1 5.8 31 235-266 96-126 (127)
21 PF04234 CopC: CopC domain; I 21.7 2.4E+02 0.0052 21.8 5.0 29 236-265 69-97 (97)
22 PF02114 Phosducin: Phosducin; 21.3 84 0.0018 29.3 2.8 30 63-92 78-110 (265)
23 PF10666 Phage_Gp14: Phage pro 20.8 56 0.0012 28.7 1.4 14 79-92 28-41 (140)
No 1
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=100.00 E-value=1e-81 Score=551.58 Aligned_cols=184 Identities=56% Similarity=0.973 Sum_probs=176.3
Q ss_pred CccccccCCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCCeEEeCCCCCCC
Q 024190 55 EDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKP 134 (271)
Q Consensus 55 ed~d~~~~~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr~di~l~L~~d~~~ 134 (271)
++|++.+..|++||||||+||+++|+||||||||||||||+++ .++++++|+|+|++|+|+++|||+|+|+|++++.+
T Consensus 15 ~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~r~pi~ldlt~~~~~ 92 (200)
T KOG3205|consen 15 EDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEGRPPIVLDLTGDLSP 92 (200)
T ss_pred ccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCCCCCeEEeCCCCccc
Confidence 3333444489999999999999999999999999999999998 78899999999999999999999999999999864
Q ss_pred --CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeecccccee
Q 024190 135 --AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQML 212 (271)
Q Consensus 135 --k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~ml 212 (271)
++.||+|||||+|+|+|+|+|||+|||||||+|+|||+||+ ||+++.||
T Consensus 93 ~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~-----------------------------VDk~~~Ml 143 (200)
T KOG3205|consen 93 ELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVK-----------------------------VDKTKYML 143 (200)
T ss_pred cccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceE-----------------------------Eeehhhhc
Confidence 99999999999999999999999999999999999999999 99999999
Q ss_pred eeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeeccC
Q 024190 213 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 269 (271)
Q Consensus 213 Gsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~W~ 269 (271)
|||+||.|+|+|.+|+|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|+
T Consensus 144 GSy~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~skF~DDDk~~hLe~~w~~~I~K~W~ 200 (200)
T KOG3205|consen 144 GSYGPQAEPYEFVTPEEEAPSGMLARGSYSAKSKFTDDDKTCHLEWNWTFDIKKEWK 200 (200)
T ss_pred ccCCCCCcceeeeCCcccCCccceeecceeeeeEEecCCCceEEEEEEEEEEeeccC
Confidence 999999999999999999999999999999999999999999999999999999995
No 2
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=100.00 E-value=2.2e-75 Score=512.08 Aligned_cols=186 Identities=51% Similarity=0.835 Sum_probs=150.6
Q ss_pred CCCcCccccccCCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCCeEEeCCC
Q 024190 51 ETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPE 130 (271)
Q Consensus 51 ~~~eed~d~~~~~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr~di~l~L~~ 130 (271)
..+|+++++.+.+|++|+++||+||++||++|||||||||||||.++ .++++++|+|+|++|+|+++|||||+|+|+.
T Consensus 14 ~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~ldl~~ 91 (200)
T PF02115_consen 14 EEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVLDLTG 91 (200)
T ss_dssp CTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEEETTS
T ss_pred ccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeeeeccC
Confidence 44566667777889999999999999999999999999999999887 6789999999999999999999999999998
Q ss_pred CC-CCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeecccc
Q 024190 131 DG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAK 209 (271)
Q Consensus 131 d~-~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~ 209 (271)
+. .+++.+|+|||||+|+|+|+|+|+|+||+||||+|+|||+||+ ||+.+
T Consensus 92 ~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~-----------------------------Vdk~~ 142 (200)
T PF02115_consen 92 DLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIP-----------------------------VDKRE 142 (200)
T ss_dssp -GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEE-----------------------------EEEEE
T ss_pred ccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEe-----------------------------Ecccc
Confidence 86 4789999999999999999999999999999999999999999 99999
Q ss_pred ceeeeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeec
Q 024190 210 QMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKE 267 (271)
Q Consensus 210 ~mlGsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~ 267 (271)
+|||||+|++++|+|.||+|+|||||||||+|+|+|+|+|||++|||+|+|+|+|+|+
T Consensus 143 ~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~DdD~~~~l~~~w~feI~Kd 200 (200)
T PF02115_consen 143 EMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVDDDKNVHLEWEWSFEIKKD 200 (200)
T ss_dssp EEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEETTSSECEEEEEEEEEESS
T ss_pred eeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEeCCCcEEEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 3
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=95.65 E-value=0.59 Score=36.68 Aligned_cols=103 Identities=22% Similarity=0.351 Sum_probs=61.8
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecc-ccCccccccccccccceeeeeeeeeeeeeeeeccccce--eee
Q 024190 138 WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAG-IKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQM--LGT 214 (271)
Q Consensus 138 ~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~G-Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~m--lGs 214 (271)
+-.++-|..+++.++|.+.++..++++-.-.++-.| ++. ||.. +.. ..|-=+.| .|.
T Consensus 25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~i---p~~g-------------~~~----~~d~C~~~~~~~~ 84 (134)
T PF02221_consen 25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPI---PFPG-------------LCE----YYDLCDNLFGNGL 84 (134)
T ss_dssp SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEE---EEES-------------SSC----EEEEEGTSCCSST
T ss_pred CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEE---cccc-------------ccC----ccchhhhcccccc
Confidence 466888999999999999999999998877777776 661 1110 000 00111111 111
Q ss_pred eCCC-CC---CeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEE
Q 024190 215 FSPQ-PE---PYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDI 264 (271)
Q Consensus 215 y~P~-~E---~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI 264 (271)
.=|- +. .|.++++ .| -.+..|.|+++-+++|++++..+=++..++|
T Consensus 85 ~CPi~~G~~~~~~~~~~---i~-~~~p~~~~~i~~~l~d~~~~~i~C~~~~v~I 134 (134)
T PF02221_consen 85 SCPIKAGEYYTYTYTIP---IP-KIYPPGKYTIQWKLTDQDGEEIACFEFPVKI 134 (134)
T ss_dssp TSTBTTTEEEEEEEEEE---ES-TTSSSEEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred cCccCCCcEEEEEEEEE---cc-cceeeEEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence 1121 11 2344443 22 2344459999999999998776666666655
No 4
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=88.13 E-value=5 Score=32.40 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=30.7
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecccc
Q 024190 141 LKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIK 175 (271)
Q Consensus 141 IKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk 175 (271)
++.|...++.+.|..+.++-+|++-.=.++-.||+
T Consensus 24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~ 58 (122)
T cd00917 24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIR 58 (122)
T ss_pred cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEE
Confidence 78899999999999999988887777688888888
No 5
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=80.72 E-value=16 Score=28.55 Aligned_cols=85 Identities=24% Similarity=0.478 Sum_probs=47.4
Q ss_pred ccCCeEEEEEEEEEeeeeeecceeEEEEEec-cccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCC-
Q 024190 142 KEGSKYSLKFTFEVSNNIVSGLKYTNTVWKA-GIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQP- 219 (271)
Q Consensus 142 KEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~-GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~- 219 (271)
+-|...++.+.|..++++-+ |+ +.+..+. |+. .||.....+.- + .+|..=|-.
T Consensus 22 ~~g~~~~i~i~f~~~~~~~~-~~-~~v~~~~~g~~---ip~~~~~~d~C-------------------~-~~~~~CPl~~ 76 (118)
T smart00737 22 VRGKTLTISISFTLNEDISK-LK-VVVHVKIGGIE---VPIPGETYDLC-------------------K-LLGSKCPIEK 76 (118)
T ss_pred CCCCEEEEEEEEEEcccceE-EE-EEEEEEECCEE---EeccCCCCCcc-------------------c-cCCCCCCCCC
Confidence 78899999999999888766 54 4544444 433 01111000110 0 113333332
Q ss_pred -CC--eeecCCCCCCCceeeeeeeeeeeEEEEeCCCceE
Q 024190 220 -EP--YIHEMPEETTPSGMFARGSYSARTKFLDDDNKCY 255 (271)
Q Consensus 220 -E~--Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~ 255 (271)
+. |...++ .|+ .+-+|+|.++..++|+|+...
T Consensus 77 G~~~~~~~~~~---v~~-~~P~~~~~v~~~l~d~~~~~i 111 (118)
T smart00737 77 GETVNYTNSLT---VPG-IFPPGKYTVKWELTDEDGEEL 111 (118)
T ss_pred CeeEEEEEeeE---ccc-cCCCeEEEEEEEEEcCCCCEE
Confidence 22 333332 222 555789999999999887653
No 6
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=72.23 E-value=58 Score=28.98 Aligned_cols=76 Identities=33% Similarity=0.400 Sum_probs=51.8
Q ss_pred eecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccce--eeeeCCCCCCeeecCCCCCCCceeee
Q 024190 160 VSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQM--LGTFSPQPEPYIHEMPEETTPSGMFA 237 (271)
Q Consensus 160 VsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~m--lGsy~P~~E~Y~~~~peEeaPSGmlA 237 (271)
+++=||+-.|+=.||+ ||| -.++--|...-. .|+|-- .++-+.|.++.|
T Consensus 68 Is~Gk~VIeV~y~gi~----------------ihs-----ethDLCdetsCPVepG~f~~---~hsq~LPg~tPP----- 118 (153)
T KOG4680|consen 68 ISEGKYVIEVSYGGIR----------------IHS-----ETHDLCDETSCPVEPGDFLV---AHSQVLPGYTPP----- 118 (153)
T ss_pred eeCCeEEEEEEEeeEE----------------Eee-----ccccccccccCCcCcCceee---eeeEeccCcCCC-----
Confidence 5666888888888998 333 233334444222 233321 256677777766
Q ss_pred eeeeeeeEEEEeCCCceEEEEEEEEEEe
Q 024190 238 RGSYSARTKFLDDDNKCYLEINYSFDIR 265 (271)
Q Consensus 238 RGsY~arSkF~DDD~~~~Le~~wsfdI~ 265 (271)
|+|..+.+-+|.+++..-=+..+|+|.
T Consensus 119 -G~Y~lkm~~~d~~~~~LTCisfsf~i~ 145 (153)
T KOG4680|consen 119 -GSYVLKMTAYDAKGKELTCISFSFDIG 145 (153)
T ss_pred -ceEEEEEEeecCCCCEEEEEEEEEEee
Confidence 799999999999999887788888886
No 7
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=56.05 E-value=1.5e+02 Score=26.50 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=28.4
Q ss_pred cCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEe
Q 024190 225 EMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 265 (271)
Q Consensus 225 ~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~ 265 (271)
..|.-+-| .++.+|.|.++... +.+|+..-=++-+|.++
T Consensus 122 ~lP~~~LP-s~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL~ 160 (162)
T cd00258 122 TLPNVDLP-SWLTNGNYRITGIL-MADGKELGCGKFTFSLE 160 (162)
T ss_pred ecccccCC-CccCCCcEEEEEEE-CCCCCEEEEEEEEEEEe
Confidence 44444557 59999999999955 78887666667777664
No 8
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=49.20 E-value=1.2e+02 Score=23.28 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=28.7
Q ss_pred CCeEEEEEEEEEeCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeE
Q 024190 106 EPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYT 166 (271)
Q Consensus 106 ~p~V~I~sL~i~~~gr~di~l~L~~d~~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~ 166 (271)
..+++|.++.|.-.+..+. . .+.-|..+++.|+|++... +.++..-
T Consensus 10 ~~~~~I~~v~i~~~~g~~~------------~--~~~~ge~~~i~i~~~~~~~-i~~~~~~ 55 (142)
T PF14524_consen 10 NGEARITSVRILDSDGEPT------------S--SFESGEPIRIRIDYEVNED-IDDPVFG 55 (142)
T ss_dssp -SSEEEEEEEEEETTEES-------------S--SEETTSEEEEEEEEEESS--EEEEEEE
T ss_pred CCCEEEEEEEEEeCCCCEe------------e--EEeCCCEEEEEEEEEECCC-CCccEEE
Confidence 4678899988876432111 1 1566889999999999554 4445443
No 9
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=48.39 E-value=38 Score=23.63 Aligned_cols=29 Identities=38% Similarity=0.670 Sum_probs=22.2
Q ss_pred CCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEE
Q 024190 228 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYS 261 (271)
Q Consensus 228 eEeaPSGmlARGsY~arSkF~DDD~~~~Le~~ws 261 (271)
.++...+--.||+|+ |+|+||+.+ .++|.
T Consensus 18 ~~~~~~~~~v~GsY~----y~~pdG~~~-~V~Y~ 46 (52)
T PF00379_consen 18 PETEDEGGVVRGSYS----YIDPDGQTR-TVTYV 46 (52)
T ss_pred cccCCCCCEEEEEEE----EECCCCCEE-EEEEE
Confidence 345556677889997 899999987 77774
No 10
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=43.54 E-value=1.9e+02 Score=24.02 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=49.5
Q ss_pred eeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCCCCeeecCCCCCCCceeee
Q 024190 158 NIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFA 237 (271)
Q Consensus 158 ~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~E~Y~~~~peEeaPSGmlA 237 (271)
.+++.|+..-+|++.|=.- .+-+.+..-.+.+|+.. +.+.+|.+.- -|.
T Consensus 56 ~~l~~~~v~a~V~~~~~~k---------------------------~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk 104 (140)
T PF11797_consen 56 AILKKLTVDAKVTKKGSKK---------------------------VLYTFKKENMQMAPNSN-FNFPIPLGGK---KLK 104 (140)
T ss_pred hhhcCcEEEEEEEECCCCe---------------------------EEEEeeccCCEECCCCe-EEeEecCCCc---Ccc
Confidence 4888899988998888530 03334444457888875 4445454321 466
Q ss_pred eeeeeeeEEEEeCCCceEEEEEEEEEEee
Q 024190 238 RGSYSARTKFLDDDNKCYLEINYSFDIRK 266 (271)
Q Consensus 238 RGsY~arSkF~DDD~~~~Le~~wsfdI~K 266 (271)
=|.|.+......++++. .|+=.|.|..
T Consensus 105 ~G~Y~l~~~~~~~~~~W--~f~k~F~It~ 131 (140)
T PF11797_consen 105 PGKYTLKITAKSGKKTW--TFTKDFTITA 131 (140)
T ss_pred CCEEEEEEEEEcCCcEE--EEEEEEEECH
Confidence 68999999999987722 3444677754
No 11
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=37.48 E-value=1.6e+02 Score=26.47 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=32.9
Q ss_pred CeEEEEEEEEEeC-CCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEe
Q 024190 107 PEVRILSLSIVAP-GRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVS 156 (271)
Q Consensus 107 p~V~I~sL~i~~~-gr~di~l~L~~d~~~k~~~FtIKEGs~Y~lki~F~V~ 156 (271)
|...-.+|+|..+ ...++-+.+.+.-=-+...+.|--|++|+|.++|+=-
T Consensus 5 ~~~f~vslslk~~pn~~PVffKvDG~RF~q~RTiKl~tdskYkv~V~~kP~ 55 (161)
T PF15043_consen 5 PGLFRVSLSLKIQPNDGPVFFKVDGQRFGQNRTIKLLTDSKYKVDVTIKPP 55 (161)
T ss_pred CceEEEEEEEEeCCCCCcEEEEecccccCCceEEEEecCCEEEEEEEEcCC
Confidence 5445556666653 4445777555332234577888899999999999754
No 12
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=37.30 E-value=1.2e+02 Score=25.87 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=37.9
Q ss_pred EeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCC
Q 024190 140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQP 219 (271)
Q Consensus 140 tIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~ 219 (271)
.||.|.+|+|++.+.+..+ +--|++.+. .|+..+.|+..-=+.
T Consensus 49 lLk~G~~Y~l~~~~~~~P~---~svylki~F----------------------------------~dr~~e~i~~~i~k~ 91 (128)
T PF15432_consen 49 LLKRGHTYQLKFNIDVVPE---NSVYLKIIF----------------------------------FDRQGEEIEEQIIKN 91 (128)
T ss_pred EecCCCEEEEEEEEEEccC---CeEEEEEEE----------------------------------EccCCCEeeEEEEec
Confidence 3899999999999999753 333333332 477777777776666
Q ss_pred CCeeecCCCCC
Q 024190 220 EPYIHEMPEET 230 (271)
Q Consensus 220 E~Y~~~~peEe 230 (271)
..-.|+.|++.
T Consensus 92 ~~~~F~yP~~a 102 (128)
T PF15432_consen 92 DSFEFTYPEEA 102 (128)
T ss_pred CceEEeCCCCc
Confidence 66777777764
No 13
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=34.67 E-value=2.4e+02 Score=22.53 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=56.3
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccce--eeee
Q 024190 138 WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQM--LGTF 215 (271)
Q Consensus 138 ~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~m--lGsy 215 (271)
+=.++-|..+++.+.|..+.++ ..|+-.=.++..||+. +|. +.. .|-=+.+ .|..
T Consensus 23 pC~~~~g~~~~i~~~f~~~~~~-~~~~~~v~~~~~gi~~---p~~--------------~~~-----~d~C~~~~~~~~~ 79 (127)
T cd00912 23 PCPDHRGGNYNLSVTGTLREDI-KSLYVDLALMSQGIKV---LNP--------------DNS-----YDFCEAGLPKPSF 79 (127)
T ss_pred CCcccCCCeEEEEEEEEECccc-cEEEEEEEEEECCEEe---ccC--------------CCC-----CCcccccCccccc
Confidence 5678889999999999888776 4446666667778771 111 000 0100111 1445
Q ss_pred CCCC--CCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceE
Q 024190 216 SPQP--EPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCY 255 (271)
Q Consensus 216 ~P~~--E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~ 255 (271)
=|-. +.|.+.... ..|+=++.++.|.++..-+|+|+...
T Consensus 80 CPl~~G~~~~~~~~~-~v~~~~~P~~~~~v~~~l~~~~~~~v 120 (127)
T cd00912 80 CPLRKGQQYSYAKTV-NVPEFTIPTIEYQVVLEDVTDKGEVL 120 (127)
T ss_pred CCcCCCCEEEEEEEE-ecCcccCCCeeEEEEEEEEcCCCCEE
Confidence 4443 345555422 24434677889999999999887643
No 14
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=29.08 E-value=1.5e+02 Score=25.64 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=36.8
Q ss_pred EeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCC
Q 024190 140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQP 219 (271)
Q Consensus 140 tIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~ 219 (271)
.||.|.+|+|++.+.+..+ |--|++.+. .|+..+-+++.-=+.
T Consensus 60 lLk~g~~Y~i~~n~~~~P~---~s~~~ki~F----------------------------------~dr~~~ei~~~i~~~ 102 (135)
T TIGR03711 60 LLKRGQTYKLSLNADASPE---GSVYLKITF----------------------------------FDRQGEEIGTEIEKD 102 (135)
T ss_pred EEcCCCEEEEEEeeeeCCC---ceEEEEEEE----------------------------------eccCCceeceEEEec
Confidence 4899999999999998653 333333221 467777777776666
Q ss_pred CCeeecCCCCC
Q 024190 220 EPYIHEMPEET 230 (271)
Q Consensus 220 E~Y~~~~peEe 230 (271)
..-++..|+|+
T Consensus 103 ~~~~F~yP~~a 113 (135)
T TIGR03711 103 DSIIFIYPDEA 113 (135)
T ss_pred CceEEECCCcc
Confidence 66777777664
No 15
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=27.64 E-value=3.4e+02 Score=22.09 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=54.4
Q ss_pred ceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeC
Q 024190 137 NWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFS 216 (271)
Q Consensus 137 ~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~ 216 (271)
.+=+|+-|...++.|.|.-+.+ +..|+-.=...-.||+ -||.....|-- +. +|.-=
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~-~~~~~~~v~~~~~gv~---ip~~~~~~daC-------------------~~-~~~~C 77 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFD-STSLKTEVHAILLGVP---VPFPLPNPDAC-------------------KN-LGTSC 77 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcc-cceeEEEEEEEECCEE---ecCCCCCCccc-------------------cC-CCCCC
Confidence 5778999999999999966555 4666666666666776 23332211111 11 13333
Q ss_pred CCC--CC--eeecCCCC-CCCceeeeeeeeeeeEEEEeCCCce
Q 024190 217 PQP--EP--YIHEMPEE-TTPSGMFARGSYSARTKFLDDDNKC 254 (271)
Q Consensus 217 P~~--E~--Y~~~~peE-eaPSGmlARGsY~arSkF~DDD~~~ 254 (271)
|-. +. |...+|-. ..| .++|.++-+..|+++..
T Consensus 78 Pl~~G~~~~y~~~~~v~~~~P-----~i~~~v~~~L~d~~~~~ 115 (123)
T cd00916 78 PLSAGEDVTYTLSLPVLAPYP-----GISVTVEWELTDDDGQV 115 (123)
T ss_pred CCcCCcEEEEEEeeeccccCC-----CeEEEEEEEEEcCCCCE
Confidence 322 22 55556642 345 46799999999987774
No 16
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=26.65 E-value=2.3e+02 Score=23.17 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=33.5
Q ss_pred eeeeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeC-CCceEEEEEEEEEEee
Q 024190 211 MLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDD-DNKCYLEINYSFDIRK 266 (271)
Q Consensus 211 mlGsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DD-D~~~~Le~~wsfdI~K 266 (271)
-|-.+.+....+.|.+-+...|.. ---+|.+..+|+.. ++.|.+.|...|+-..
T Consensus 67 ~l~~~D~~~~~~~y~vveg~~~~~--~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~ 121 (148)
T cd07816 67 RIDAVDEENKTYKYTVIEGDVLKD--GYKSYKVEIKFVPKGDGGCVVKWTIEYEKKG 121 (148)
T ss_pred EEEEEcccccEEEEEEEecccccC--ceEEEEEEEEEEECCCCCEEEEEEEEEEECC
Confidence 333444444445555544333331 23689999999876 6789988888887543
No 17
>PHA00407 phage lambda Rz1-like protein
Probab=26.25 E-value=26 Score=28.36 Aligned_cols=12 Identities=50% Similarity=1.149 Sum_probs=10.3
Q ss_pred hHHHHHHHhcCC
Q 024190 84 SLRKWKEQLLGS 95 (271)
Q Consensus 84 SLrKwKesLLG~ 95 (271)
-|++||..|+|.
T Consensus 27 tl~rwkaaLIGl 38 (84)
T PHA00407 27 TLRRWKAALIGL 38 (84)
T ss_pred hhHHHHHHHHHH
Confidence 489999999875
No 18
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=25.47 E-value=56 Score=28.90 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=22.0
Q ss_pred eeeeeeeeEEE-EeCCCceEEEEEE
Q 024190 237 ARGSYSARTKF-LDDDNKCYLEINY 260 (271)
Q Consensus 237 ARGsY~arSkF-~DDD~~~~Le~~w 260 (271)
.||..+.++.| +|+||+..+.|+|
T Consensus 29 L~~~~P~~tifsid~~g~f~iDF~Y 53 (147)
T PF04787_consen 29 LLNKHPNDTIFSIDEDGKFFIDFEY 53 (147)
T ss_pred HhcCCCcceeeeEcCCCCEEEEeee
Confidence 47889999999 9999999999998
No 19
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=23.20 E-value=1.3e+02 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.589 Sum_probs=27.5
Q ss_pred eeeeeeeeeEEEEeCCCceEEEEEEEEEEe
Q 024190 236 FARGSYSARTKFLDDDNKCYLEINYSFDIR 265 (271)
Q Consensus 236 lARGsY~arSkF~DDD~~~~Le~~wsfdI~ 265 (271)
+.-|.|++++-.+|-++++--+++|.|-|-
T Consensus 91 l~dG~ytvk~eiL~s~g~vV~t~s~~~~ID 120 (124)
T PF13752_consen 91 LGDGTYTVKSEILDSQGTVVQTYSYPFTID 120 (124)
T ss_pred CCCCcEEEEEEeeccCCCEEEeeeEeEEEe
Confidence 477999999999999999999999999884
No 20
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=22.53 E-value=2.7e+02 Score=24.10 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=27.7
Q ss_pred eeeeeeeeeeEEEEeCCCceEEEEEEEEEEee
Q 024190 235 MFARGSYSARTKFLDDDNKCYLEINYSFDIRK 266 (271)
Q Consensus 235 mlARGsY~arSkF~DDD~~~~Le~~wsfdI~K 266 (271)
-|.+|.|.+.-+++-.||+.- +=.++|.|++
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v-~G~~sFsV~~ 126 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVV-KGSISFSVGA 126 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEe-ccEEEEEecC
Confidence 578899999999999999987 8889999874
No 21
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=21.71 E-value=2.4e+02 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=23.4
Q ss_pred eeeeeeeeeEEEEeCCCceEEEEEEEEEEe
Q 024190 236 FARGSYSARTKFLDDDNKCYLEINYSFDIR 265 (271)
Q Consensus 236 lARGsY~arSkF~DDD~~~~Le~~wsfdI~ 265 (271)
|+-|.|.++-+.+-.||+.- +=.|+|.++
T Consensus 69 l~~G~YtV~wrvvs~DGH~~-~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPV-SGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEE-EEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCc-CCEEEEEEC
Confidence 77799999999999999986 778888763
No 22
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=21.28 E-value=84 Score=29.29 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=17.3
Q ss_pred CccCCcccCHHHHHhcC---CcchhHHHHHHHh
Q 024190 63 DIQLGPQYTLKEQIEKD---KDDESLRKWKEQL 92 (271)
Q Consensus 63 ~yk~g~~ktl~E~~~lD---kdDESLrKwKesL 92 (271)
.=++..+.|++|+-.++ .||+-|++|+++=
T Consensus 78 ~e~~~~~~~~~e~e~~~~d~eDeefL~~yR~qR 110 (265)
T PF02114_consen 78 EEKLSEKMSLDELEELEDDEEDEEFLEQYREQR 110 (265)
T ss_dssp SS----SS-HHHHHHHCC----HHHHHHHHHHH
T ss_pred hhhhcccccHhHHhhhhcccccHHHHHHHHHHH
Confidence 34456788999887764 3456899999873
No 23
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=20.75 E-value=56 Score=28.67 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=11.6
Q ss_pred CCcchhHHHHHHHh
Q 024190 79 DKDDESLRKWKEQL 92 (271)
Q Consensus 79 DkdDESLrKwKesL 92 (271)
-=+|||+|||-++-
T Consensus 28 ~~~DE~~rk~~e~~ 41 (140)
T PF10666_consen 28 SLDDEMRRKWIEAD 41 (140)
T ss_pred ecChHHHHHHHHHH
Confidence 34899999998875
Done!