Query 024190
Match_columns 271
No_of_seqs 141 out of 277
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 03:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1doa_B RHO GDI 1, protein (GDP 100.0 2.9E-78 1E-82 536.0 18.4 188 52-270 30-219 (219)
2 1ds6_B RHO GDP-dissociation in 100.0 9.3E-78 3.2E-82 519.1 16.5 178 62-270 1-180 (180)
3 1kmt_A RHO GDP-dissociation in 100.0 8.3E-61 2.8E-65 399.8 15.0 138 104-270 2-141 (141)
4 2ag4_A GM2-AP, ganglioside GM2 83.7 6.8 0.00023 32.3 9.1 40 224-265 123-162 (164)
5 1nep_A EPV20, BNPC2, epididyma 71.9 29 0.001 27.2 9.1 100 136-265 25-129 (130)
6 2r5o_A Putative ATP binding co 62.5 59 0.002 26.5 9.5 55 106-175 45-100 (188)
7 3t5g_B Retinal ROD rhodopsin-s 46.8 47 0.0016 28.3 6.5 81 146-257 60-145 (152)
8 1xwv_A DER F II; beta sheets, 46.1 1E+02 0.0035 24.0 8.4 100 135-266 23-129 (129)
9 4f98_A Hypothetical protein; P 34.2 74 0.0025 23.8 5.1 42 217-261 12-60 (69)
10 4gbs_A Putative lipoprotein; P 23.7 69 0.0024 26.4 3.8 25 239-264 170-198 (200)
11 4goj_C Protein UNC-119 homolog 21.1 52 0.0018 29.9 2.7 127 106-262 83-236 (240)
No 1
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=100.00 E-value=2.9e-78 Score=536.03 Aligned_cols=188 Identities=36% Similarity=0.636 Sum_probs=177.7
Q ss_pred CCcCccccccCCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCC-eEEeCCC
Q 024190 52 TDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND-IVLAVPE 130 (271)
Q Consensus 52 ~~eed~d~~~~~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr~d-i~l~L~~ 130 (271)
.+||++++.+.+|++|++|||+||++||+||||||||||||||+++ .+.++++|+|+|++|+|+++||++ |+|+|++
T Consensus 30 ~~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~ 107 (219)
T 1doa_B 30 AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTG 107 (219)
T ss_dssp CSSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSS
T ss_pred cccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCC
Confidence 3455666777889999999999999999999999999999999876 577889999999999999999965 9999998
Q ss_pred CC-CCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeecccc
Q 024190 131 DG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAK 209 (271)
Q Consensus 131 d~-~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~ 209 (271)
+. ++++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+ ||+++
T Consensus 108 ~~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~-----------------------------Vdk~~ 158 (219)
T 1doa_B 108 DLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK-----------------------------IDKTD 158 (219)
T ss_dssp CCGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEE-----------------------------EEEEE
T ss_pred ChhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeE-----------------------------ECCcc
Confidence 76 4699999999999999999999999999999999999999999 99999
Q ss_pred ceeeeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeeccCC
Q 024190 210 QMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAA 270 (271)
Q Consensus 210 ~mlGsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~W~~ 270 (271)
+|||||+|++++|+|+||+|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|.+
T Consensus 159 ~MlGSY~P~~e~y~~~~p~EeAPSGmLARG~Y~akSkF~DDD~~~hL~~eWsfeI~KdW~~ 219 (219)
T 1doa_B 159 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD 219 (219)
T ss_dssp EEEEEECCCSSCEEEECCCEECCCTTSCCSEEEEEEEEECTTCCCCEEEEEEEEEESSTTC
T ss_pred eeeeccCCCCCcccccCCCccCCccceeeeeeeeeEEEEeCCCceEEEEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 2
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=100.00 E-value=9.3e-78 Score=519.10 Aligned_cols=178 Identities=39% Similarity=0.655 Sum_probs=170.9
Q ss_pred CCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCC-CCeEEeCCCCC-CCCCceE
Q 024190 62 QDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGR-NDIVLAVPEDG-KPAGNWF 139 (271)
Q Consensus 62 ~~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr-~di~l~L~~d~-~~k~~~F 139 (271)
++|++|+++||+||++||+||||||||||||||+++ .++++++|+|+|.+|+|+++|| +||+++|+.+. ++++.+|
T Consensus 1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f 78 (180)
T 1ds6_B 1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI 78 (180)
T ss_dssp CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence 369999999999999999999999999999999876 6778899999999999999999 78999999885 3589999
Q ss_pred EeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCC
Q 024190 140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQP 219 (271)
Q Consensus 140 tIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~ 219 (271)
+|||||+|+|+|+|+|||+|||||||+|+|||+||+ ||++++|||||+|++
T Consensus 79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~-----------------------------Vdk~~~mlGsy~P~~ 129 (180)
T 1ds6_B 79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK-----------------------------VDKATFMVGSYGPRP 129 (180)
T ss_dssp EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEE-----------------------------EEEEEEEEEEECCCS
T ss_pred EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEE-----------------------------ECCceEeeeccCCCC
Confidence 999999999999999999999999999999999999 999999999999999
Q ss_pred CCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeeccCC
Q 024190 220 EPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAA 270 (271)
Q Consensus 220 E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~W~~ 270 (271)
++|+|+||+|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|.+
T Consensus 130 e~y~~~~p~eeaPsG~laRG~Y~a~skF~DDD~~~hl~~~wsfeI~KdW~~ 180 (180)
T 1ds6_B 130 EEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWGE 180 (180)
T ss_dssp SCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCCEEEEEEEEEESSCC-
T ss_pred CceeecCCCccCCcceeeeeeeeeeEEEEcCCCceEEEEEEEEEEeeCCCC
Confidence 999999999999999999999999999999999999999999999999974
No 3
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=100.00 E-value=8.3e-61 Score=399.80 Aligned_cols=138 Identities=34% Similarity=0.671 Sum_probs=131.4
Q ss_pred CCCCeEEEEEEEEEeCCCC-CeEEeCCCCC-CCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccc
Q 024190 104 TLEPEVRILSLSIVAPGRN-DIVLAVPEDG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTY 181 (271)
Q Consensus 104 ~~~p~V~I~sL~i~~~gr~-di~l~L~~d~-~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~ 181 (271)
+++|+|+|.+|+|+++||+ +|+++|+++. ++++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+
T Consensus 2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~------ 75 (141)
T 1kmt_A 2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK------ 75 (141)
T ss_dssp CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEE------
T ss_pred CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEE------
Confidence 4678999999999999976 5999999875 4699999999999999999999999999999999999999999
Q ss_pred cccccccceeeeeeeeeeeeeeeeccccceeeeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEE
Q 024190 182 ARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYS 261 (271)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~ws 261 (271)
||++++|||||+|++|+|+++||+|||||||||||+|+|+|+|+|||++|||+|+|+
T Consensus 76 -----------------------Vdk~~~mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~ 132 (141)
T 1kmt_A 76 -----------------------IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWN 132 (141)
T ss_dssp -----------------------EEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEE
T ss_pred -----------------------ECcceEeeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCC
Q 024190 262 FDIRKEWAA 270 (271)
Q Consensus 262 fdI~K~W~~ 270 (271)
|+|+|+|.+
T Consensus 133 feI~KdW~~ 141 (141)
T 1kmt_A 133 LTIKKDWKD 141 (141)
T ss_dssp EEEESCC--
T ss_pred EEEecCCCC
Confidence 999999974
No 4
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=83.73 E-value=6.8 Score=32.28 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=30.4
Q ss_pred ecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEe
Q 024190 224 HEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 265 (271)
Q Consensus 224 ~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~ 265 (271)
+.+|..+.|+ ++..|.|.++..+.| +++.-.=++..|.|.
T Consensus 123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~-~~~~l~Ci~~~~~l~ 162 (164)
T 2ag4_A 123 FVVPDLELPS-WLTTGNYRIESVLSS-SGKRLGCIKIAASLK 162 (164)
T ss_dssp EEECCCCCCT-TCSSEEEEEEEEEEE-TTEEEEEEEEEEEEE
T ss_pred eecCcccccC-ccCCceEEEEEEEec-CCCEEEEEEEEEEEE
Confidence 6677778888 888999999999987 555555566666653
No 5
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=71.90 E-value=29 Score=27.15 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=60.4
Q ss_pred CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeee
Q 024190 136 GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTF 215 (271)
Q Consensus 136 ~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy 215 (271)
..+=.|+-|..+++.+.|.-+.++ ++|+-.=.++=.||.. ||. + .+..--.-|.-
T Consensus 25 ~~PC~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gv~v---p~~--------------~-------~~~daC~~g~~ 79 (130)
T 1nep_A 25 TQPCKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPV---PFP--------------I-------PESDGCKSGIR 79 (130)
T ss_dssp SSSEEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEE---ECC--------------C-------SCCBGGGTTCC
T ss_pred CCCCEEEcCCeEEEEEEEEccccc-ceEEEEEEEEECCEEe---ecc--------------C-------CCCCcccCCCc
Confidence 357789999999999999998874 6666555555566661 111 0 11111111333
Q ss_pred CCCC--CC--eeecCCC-CCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEe
Q 024190 216 SPQP--EP--YIHEMPE-ETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 265 (271)
Q Consensus 216 ~P~~--E~--Y~~~~pe-EeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~ 265 (271)
=|-. +. |...+|- ...| +++|.++-+.+|+++....=|...++|+
T Consensus 80 CPl~~G~~~~y~~~lpV~~~~P-----~~~~~v~~~L~d~~~~~l~C~~~~~~I~ 129 (130)
T 1nep_A 80 CPIEKDKTYNYVNKLPVKNEYP-----SIKVVVEWELTDDKNQRFFCWQIPIEVE 129 (130)
T ss_dssp SSBCTTCEEEEEEEEECCTTSC-----SSEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CcccCCcEEEEEEEeEecccCC-----CccEEEEEEEEcCCCCEEEEEEEeEEEE
Confidence 2322 23 5545552 2345 4679999999999998555556566654
No 6
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=62.50 E-value=59 Score=26.45 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=33.0
Q ss_pred CCeEEEEEEEEEeCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEe-cccc
Q 024190 106 EPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWK-AGIK 175 (271)
Q Consensus 106 ~p~V~I~sL~i~~~gr~di~l~L~~d~~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K-~GIk 175 (271)
..+++|.++.|.-.+..++. ++.-|..++|+++|++..+| ..+..-=.++. .|..
T Consensus 45 sg~a~I~~v~l~d~~G~~~~--------------~~~~Ge~v~l~i~~~~~~~i-~~~v~G~~Ik~~~G~~ 100 (188)
T 2r5o_A 45 QGGAKIIDYHIQSAGVDFPP--------------SLTGNQQTDFLMKVVFEYDF-DCVVPGILIKTLDGLF 100 (188)
T ss_dssp CCSEEEEEEEEEETTEESCS--------------SEETTCEEEEEEEEEESSCE-EEEEEEEEEEETTCCE
T ss_pred CCcEEEEEEEEEECCCCEee--------------EEeCCCEEEEEEEEEECCcC-CccEEEEEEECCCCCE
Confidence 46788999888654322111 15568889999999997643 44443333333 3555
No 7
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=46.78 E-value=47 Score=28.31 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=56.3
Q ss_pred eEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCCCC---e
Q 024190 146 KYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEP---Y 222 (271)
Q Consensus 146 ~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~E~---Y 222 (271)
.-.-++.|.+ .+.|.++|-+|.++=+|-. +.+-..-.|=--|+... .
T Consensus 60 ~V~~~i~Fs~-~epi~nFRmierhyf~~~l-----------------------------le~~dF~FGF~IP~StNTWe~ 109 (152)
T 3t5g_B 60 AVSRELNFSS-TEQMEKFRLEQKVYFKGQC-----------------------------LEEWFFEFGFVIPNSTNTWQS 109 (152)
T ss_dssp EEEEEEEEEE-SSCEEEEEEEEEEEETTEE-----------------------------EEEEEEEEEEECTTEEEEEEE
T ss_pred hheEEEEEec-cccccccEEEEEEEEcCce-----------------------------eeeEeeeeeeEcCCCCcccce
Confidence 4456888998 8899999999999988866 44445555655677552 5
Q ss_pred eecCCCC--CCCceeeeeeeeeeeEEEEeCCCceEEE
Q 024190 223 IHEMPEE--TTPSGMFARGSYSARTKFLDDDNKCYLE 257 (271)
Q Consensus 223 ~~~~peE--eaPSGmlARGsY~arSkF~DDD~~~~Le 257 (271)
++++|++ --|. -..-|.-.+.++|+|+|.-+.-+
T Consensus 110 i~E~~~~~~mlpa-~~lsGnv~IeT~f~d~d~li~~s 145 (152)
T 3t5g_B 110 LIEAAPESQMMPA-SVLTGNVIIETKFFDDDLLVSTS 145 (152)
T ss_dssp EEEBCCGGGSCCH-HHHTTTEEEEEEEEETTEEEEEE
T ss_pred EEEcCCccccCCH-hHcCCcEEEEEEEecCCEEEEEe
Confidence 5555533 1222 22359999999999998766544
No 8
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=46.13 E-value=1e+02 Score=23.98 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=61.5
Q ss_pred CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeee
Q 024190 135 AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGT 214 (271)
Q Consensus 135 k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGs 214 (271)
...+=.|+-|..+++.+.|.-+.+ ++.|+-.=.+.=.|+.. ||.-...|-- -|.
T Consensus 23 ~~~pC~l~rG~~~~i~~~f~~~~~-~~~l~~~v~~~~~g~~i---p~p~~~~daC----------------------~~~ 76 (129)
T 1xwv_A 23 GSDPCIIHRGKPFTLEALFDANQN-TKTAKIEIKASLDGLEI---DVPGIDTNAC----------------------HFM 76 (129)
T ss_dssp BTSCEEEETTSEEEEEEEEECCSC-BSCCEEEEEEEETTEEE---CCCSCCCBGG----------------------GTS
T ss_pred CCCCCEEeCCCeEEEEEEEECCCc-cceEEEEEEEEEcCEEe---ecCCCCCCcc----------------------CCc
Confidence 345788999999999999998777 68888777777778771 2211111100 111
Q ss_pred eCCC--CCC--eeecCCC-CCCCceeeeeee-eeeeEEEEeCCCceEEEE-EEEEEEee
Q 024190 215 FSPQ--PEP--YIHEMPE-ETTPSGMFARGS-YSARTKFLDDDNKCYLEI-NYSFDIRK 266 (271)
Q Consensus 215 y~P~--~E~--Y~~~~pe-EeaPSGmlARGs-Y~arSkF~DDD~~~~Le~-~wsfdI~K 266 (271)
-=|- .+. |...+|- ...|. ++ |.++-+.+||++ ...=| ...++|++
T Consensus 77 ~CPl~~G~~~~y~~~~~v~~~~P~-----v~~~~v~~~L~d~~~-~l~Cf~~~~~~I~~ 129 (129)
T 1xwv_A 77 KCPLVKGQQYDAKYTWNVPKIAPK-----SENVVVTVKLVGDNG-VLACAIATHAKIRD 129 (129)
T ss_dssp CSSBCTTCEEEEEEEEECCTTSCC-----BSCEEEEEEEEETTE-EEEEEEECCEEEEC
T ss_pred cCcccCCEEEEEEEEeEecccCCC-----CceEEEEEEEEcCCC-cEEEEecccEEEeC
Confidence 1122 123 4444553 33454 67 999999999988 44445 55566653
No 9
>4f98_A Hypothetical protein; PF10976 family protein, DUF2790, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.26A {Pseudomonas aeruginosa}
Probab=34.17 E-value=74 Score=23.77 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=33.2
Q ss_pred CCCCCeeecCCCC-------CCCceeeeeeeeeeeEEEEeCCCceEEEEEEE
Q 024190 217 PQPEPYIHEMPEE-------TTPSGMFARGSYSARTKFLDDDNKCYLEINYS 261 (271)
Q Consensus 217 P~~E~Y~~~~peE-------eaPSGmlARGsY~arSkF~DDD~~~~Le~~ws 261 (271)
|..++|.|-|+-+ +.|+. .-|--.|+.+|.|--|+.| .++|.
T Consensus 12 ~~v~~Y~YGm~LDIakVis~t~~~~--~C~Vvpa~MtY~DS~G~~~-~l~Y~ 60 (69)
T 4f98_A 12 LPVEEYHYGMQLDVKNVLHRTDNST--RTGVVPVTVVYEDHSGELH-KIRFL 60 (69)
T ss_dssp CCBCCCCTTCCCCCSEEEEECCCTT--CCSEEEEEEEEECTTSCEE-EEEEE
T ss_pred CccEeEecCCccceeeEEEecCCCC--ccceEccEEEEEcCCCCEE-EEEEE
Confidence 4556799999955 32333 7799999999999999999 77775
No 10
>4gbs_A Putative lipoprotein; PF14064 family, transport, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MLY; 2.48A {Bacteroides fragilis}
Probab=23.70 E-value=69 Score=26.38 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=18.2
Q ss_pred eeeeeeEEEEe----CCCceEEEEEEEEEE
Q 024190 239 GSYSARTKFLD----DDNKCYLEINYSFDI 264 (271)
Q Consensus 239 GsY~arSkF~D----DD~~~~Le~~wsfdI 264 (271)
|+| ||.+|+| .+.+.|++|+|-|.+
T Consensus 170 G~Y-aKlq~~syyn~~g~~g~~tF~Y~yp~ 198 (200)
T 4gbs_A 170 DTM-AAIRLVSYMNAAGIXGYMTFDYIYPY 198 (200)
T ss_dssp SCE-EEEEEEEEECTTCCEEEEEEEEESSC
T ss_pred CCE-EEEEEEEeECCCCceeeEEEEEEeec
Confidence 887 6666553 556699999998754
No 11
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=21.08 E-value=52 Score=29.85 Aligned_cols=127 Identities=15% Similarity=0.256 Sum_probs=73.2
Q ss_pred CCeEEEEEEEEEeCCCCCeEEeCCCCCCCC-----CceEEeccC--CeEEEE------------EEEEEeeeeeecceeE
Q 024190 106 EPEVRILSLSIVAPGRNDIVLAVPEDGKPA-----GNWFTLKEG--SKYSLK------------FTFEVSNNIVSGLKYT 166 (271)
Q Consensus 106 ~p~V~I~sL~i~~~gr~di~l~L~~d~~~k-----~~~FtIKEG--s~Y~lk------------i~F~V~~~IVsGLkY~ 166 (271)
--++.+.++.|--.....+-+.+..+.... ....---.| .+|++. |.|.|-.+.|..+|-+
T Consensus 83 ~y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~nFRmi 162 (240)
T 4goj_C 83 IYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMI 162 (240)
T ss_dssp TTCCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEEEEEE
T ss_pred ccCcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhcceee
Confidence 346778888887655555544442211000 001111123 356654 9999988899999999
Q ss_pred EEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCCC---CeeecCCC--CCCCceeeeeeee
Q 024190 167 NTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPE---PYIHEMPE--ETTPSGMFARGSY 241 (271)
Q Consensus 167 q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~E---~Y~~~~pe--EeaPSGmlARGsY 241 (271)
|.++=.|.- +.+-..-.|---|+.. ..++++|+ +..|.-|+. |.|
T Consensus 163 ERhyFrd~l-----------------------------LksfDFeFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~-~p~ 212 (240)
T 4goj_C 163 ERHYFRNQL-----------------------------LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR-HPY 212 (240)
T ss_dssp EEEEETTEE-----------------------------EEEEEEEEEEECTTCEEEEEEEEECCCCCHHHHHHHHH-STT
T ss_pred ehhhhcccc-----------------------------hheeccccceeccCCcccceeEEecCCcchhhHHHHHh-CCC
Confidence 999988877 5555666776678865 36777773 344455554 888
Q ss_pred eee--EEEEeCCC-ceEEEEEEEE
Q 024190 242 SAR--TKFLDDDN-KCYLEINYSF 262 (271)
Q Consensus 242 ~ar--SkF~DDD~-~~~Le~~wsf 262 (271)
-.+ |.|.+||+ ..|=.-+|+|
T Consensus 213 Et~sdSFYFvddkLvMHNKAdY~Y 236 (240)
T 4goj_C 213 ETQSDSFYFVDDRLVMHNKADYSY 236 (240)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ceeeeeeEEECCEEEEcchhhccc
Confidence 443 33434433 2344555665
Done!