Query 024191
Match_columns 271
No_of_seqs 188 out of 2345
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:44:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01853 lipid_A_lpxD UDP-3-O 100.0 1.4E-37 3.1E-42 271.7 27.2 249 14-268 71-320 (324)
2 COG1044 LpxD UDP-3-O-[3-hydrox 100.0 2E-37 4.3E-42 263.0 23.1 247 14-267 79-326 (338)
3 PRK00892 lpxD UDP-3-O-[3-hydro 100.0 2E-35 4.4E-40 261.4 27.2 225 41-266 101-327 (343)
4 COG1043 LpxA Acyl-[acyl carrie 100.0 4.6E-33 9.9E-38 224.2 16.5 185 59-251 4-192 (260)
5 PRK12461 UDP-N-acetylglucosami 100.0 1.7E-31 3.6E-36 225.9 22.9 184 49-251 2-187 (255)
6 cd03352 LbH_LpxD UDP-3-O-acyl- 100.0 1.8E-30 4E-35 214.3 24.9 200 55-255 4-204 (205)
7 PRK05289 UDP-N-acetylglucosami 100.0 3.3E-30 7.1E-35 219.7 21.9 186 48-252 4-192 (262)
8 cd03351 LbH_UDP-GlcNAc_AT UDP- 100.0 1.9E-28 4.1E-33 208.4 24.1 184 49-251 2-188 (254)
9 TIGR01852 lipid_A_lpxA acyl-[a 100.0 3.4E-28 7.3E-33 206.9 23.1 109 143-251 76-187 (254)
10 TIGR01173 glmU UDP-N-acetylglu 100.0 5.6E-29 1.2E-33 228.6 16.8 224 6-258 207-448 (451)
11 PRK14355 glmU bifunctional N-a 100.0 6.4E-28 1.4E-32 222.0 18.5 224 6-257 214-454 (459)
12 PRK09451 glmU bifunctional N-a 100.0 2.9E-27 6.3E-32 217.5 19.2 214 17-260 229-454 (456)
13 cd03353 LbH_GlmU_C N-acetyl-gl 100.0 2.2E-26 4.7E-31 188.2 22.2 177 46-249 9-192 (193)
14 PRK14352 glmU bifunctional N-a 99.9 6.7E-27 1.5E-31 216.3 18.2 222 6-256 217-455 (482)
15 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 5.4E-26 1.2E-30 193.4 20.5 202 44-264 3-218 (254)
16 PRK12461 UDP-N-acetylglucosami 99.9 1.3E-25 2.9E-30 189.9 20.6 204 43-266 2-219 (255)
17 COG1207 GlmU N-acetylglucosami 99.9 1.5E-26 3.2E-31 201.0 13.6 192 40-258 248-455 (460)
18 PRK14353 glmU bifunctional N-a 99.9 6.1E-26 1.3E-30 208.2 17.5 203 6-253 215-432 (446)
19 PRK05289 UDP-N-acetylglucosami 99.9 2.7E-25 5.9E-30 189.5 19.9 205 42-265 4-222 (262)
20 PRK14357 glmU bifunctional N-a 99.9 1.8E-25 4E-30 205.2 17.9 179 49-254 245-436 (448)
21 PRK14356 glmU bifunctional N-a 99.9 2.1E-25 4.6E-30 205.2 17.6 218 6-252 215-449 (456)
22 TIGR01852 lipid_A_lpxA acyl-[a 99.9 1.5E-24 3.2E-29 184.6 20.7 204 44-266 2-219 (254)
23 PRK14354 glmU bifunctional N-a 99.9 4.3E-25 9.3E-30 203.3 18.8 187 48-262 261-455 (458)
24 PRK14358 glmU bifunctional N-a 99.9 8.7E-25 1.9E-29 201.9 18.9 224 6-257 216-456 (481)
25 PRK14360 glmU bifunctional N-a 99.9 9.5E-25 2.1E-29 200.6 17.9 181 49-256 252-446 (450)
26 PRK14359 glmU bifunctional N-a 99.9 8.6E-25 1.9E-29 199.7 16.8 218 6-258 206-425 (430)
27 COG1044 LpxD UDP-3-O-[3-hydrox 99.9 7E-24 1.5E-28 180.5 16.5 179 46-244 99-287 (338)
28 COG1043 LpxA Acyl-[acyl carrie 99.9 6.8E-24 1.5E-28 171.3 13.6 206 43-267 6-225 (260)
29 PRK00892 lpxD UDP-3-O-[3-hydro 99.9 9.4E-23 2E-27 180.6 17.2 167 41-228 113-305 (343)
30 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.9 4.4E-23 9.6E-28 172.1 13.8 179 9-263 42-222 (231)
31 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 4.4E-22 9.5E-27 174.2 19.7 80 143-228 217-296 (324)
32 cd03352 LbH_LpxD UDP-3-O-acyl- 99.9 1.9E-20 4E-25 154.6 21.3 166 44-231 5-196 (205)
33 cd03353 LbH_GlmU_C N-acetyl-gl 99.8 1.5E-19 3.2E-24 147.8 19.2 161 41-230 16-189 (193)
34 cd05636 LbH_G1P_TT_C_like Puta 99.8 1.6E-19 3.5E-24 143.6 18.1 154 44-234 9-162 (163)
35 PRK14353 glmU bifunctional N-a 99.8 2.3E-19 5E-24 164.7 18.8 152 41-230 269-425 (446)
36 COG0663 PaaY Carbonic anhydras 99.8 5.9E-20 1.3E-24 143.5 11.9 62 197-259 86-149 (176)
37 PRK13627 carnitine operon prot 99.8 4.2E-19 9.1E-24 144.5 14.8 64 201-264 88-153 (196)
38 TIGR01173 glmU UDP-N-acetylglu 99.8 7.6E-19 1.6E-23 161.5 17.5 155 46-229 267-434 (451)
39 TIGR03308 phn_thr-fam phosphon 99.8 8.9E-19 1.9E-23 143.7 15.8 157 56-255 6-162 (204)
40 cd03350 LbH_THP_succinylT 2,3, 99.8 1.5E-18 3.2E-23 134.4 15.8 65 182-249 74-139 (139)
41 cd04745 LbH_paaY_like paaY-lik 99.8 8E-19 1.7E-23 138.4 13.8 62 201-262 78-141 (155)
42 PRK14358 glmU bifunctional N-a 99.8 2.4E-18 5.1E-23 159.2 17.8 171 43-243 273-456 (481)
43 PRK14352 glmU bifunctional N-a 99.8 3.1E-18 6.8E-23 158.6 18.3 164 45-237 276-453 (482)
44 TIGR00965 dapD 2,3,4,5-tetrahy 99.8 4.4E-18 9.5E-23 142.6 15.7 66 182-250 172-239 (269)
45 PLN02296 carbonate dehydratase 99.8 2.7E-18 5.9E-23 145.8 14.4 55 201-255 136-192 (269)
46 COG1207 GlmU N-acetylglucosami 99.8 1.4E-18 3E-23 151.6 12.4 158 45-229 273-443 (460)
47 PRK09451 glmU bifunctional N-a 99.8 6.4E-18 1.4E-22 155.6 17.1 160 43-231 268-440 (456)
48 cd04646 LbH_Dynactin_6 Dynacti 99.8 1.1E-17 2.4E-22 133.0 16.1 84 166-256 67-150 (164)
49 PRK14357 glmU bifunctional N-a 99.8 8.8E-18 1.9E-22 154.4 16.1 156 47-231 250-429 (448)
50 PRK14359 glmU bifunctional N-a 99.8 1.1E-17 2.4E-22 153.0 16.5 150 47-229 254-411 (430)
51 PRK14360 glmU bifunctional N-a 99.8 1.7E-17 3.6E-22 152.6 17.3 148 54-230 276-435 (450)
52 TIGR02287 PaaY phenylacetic ac 99.8 7.5E-18 1.6E-22 136.7 13.1 54 202-255 87-142 (192)
53 PLN02472 uncharacterized prote 99.8 1.1E-17 2.4E-22 140.3 14.2 57 201-257 143-201 (246)
54 PRK14355 glmU bifunctional N-a 99.8 4.5E-17 9.7E-22 150.1 19.2 158 59-243 256-423 (459)
55 PRK09527 lacA galactoside O-ac 99.8 1.3E-17 2.7E-22 136.1 13.0 113 104-256 74-186 (203)
56 cd00710 LbH_gamma_CA Gamma car 99.7 1.1E-16 2.4E-21 127.7 16.9 77 165-243 64-140 (167)
57 PRK14354 glmU bifunctional N-a 99.7 9.6E-17 2.1E-21 147.9 18.7 113 89-229 317-437 (458)
58 PRK14356 glmU bifunctional N-a 99.7 9.2E-17 2E-21 147.9 17.6 71 143-218 356-433 (456)
59 cd03358 LbH_WxcM_N_like WcxM-l 99.7 5.9E-17 1.3E-21 122.0 12.8 54 200-253 66-119 (119)
60 PRK11830 dapD 2,3,4,5-tetrahyd 99.7 6.7E-17 1.5E-21 136.7 14.3 71 183-256 176-258 (272)
61 PRK10502 putative acyl transfe 99.7 5.3E-17 1.2E-21 131.2 13.0 108 105-255 71-178 (182)
62 cd04650 LbH_FBP Ferripyochelin 99.7 1.4E-16 3.1E-21 125.3 14.9 56 202-257 79-136 (154)
63 PRK09677 putative lipopolysacc 99.7 1.8E-16 3.8E-21 129.2 12.0 139 104-260 42-189 (192)
64 TIGR03570 NeuD_NnaD sugar O-ac 99.7 4.8E-16 1E-20 127.4 14.6 102 144-249 100-201 (201)
65 cd04646 LbH_Dynactin_6 Dynacti 99.7 3.9E-16 8.4E-21 124.1 13.0 146 91-266 2-156 (164)
66 cd00710 LbH_gamma_CA Gamma car 99.7 1.9E-15 4.1E-20 120.6 15.9 74 143-222 64-137 (167)
67 cd04645 LbH_gamma_CA_like Gamm 99.7 2.1E-15 4.6E-20 118.6 15.5 72 167-255 62-133 (153)
68 cd03360 LbH_AT_putative Putati 99.7 1.3E-15 2.8E-20 123.9 14.6 99 146-248 99-197 (197)
69 COG0663 PaaY Carbonic anhydras 99.7 1.5E-15 3.3E-20 118.8 13.7 73 167-240 74-147 (176)
70 PRK10092 maltose O-acetyltrans 99.7 5.5E-16 1.2E-20 124.9 11.6 111 104-254 72-182 (183)
71 cd03359 LbH_Dynactin_5 Dynacti 99.7 2.1E-15 4.5E-20 119.6 14.6 66 203-268 91-158 (161)
72 cd03357 LbH_MAT_GAT Maltose O- 99.7 8.4E-16 1.8E-20 122.9 11.8 108 105-252 62-169 (169)
73 cd05636 LbH_G1P_TT_C_like Puta 99.7 1E-14 2.3E-19 115.9 17.1 92 63-180 10-102 (163)
74 PRK13627 carnitine operon prot 99.6 5.1E-15 1.1E-19 120.6 14.6 60 182-241 87-147 (196)
75 cd05825 LbH_wcaF_like wcaF-lik 99.6 3.3E-15 7.2E-20 110.3 12.4 56 197-252 52-107 (107)
76 cd03350 LbH_THP_succinylT 2,3, 99.6 1.1E-14 2.5E-19 112.6 15.4 125 49-221 4-128 (139)
77 cd04645 LbH_gamma_CA_like Gamm 99.6 1E-14 2.2E-19 114.7 14.4 108 91-234 2-110 (153)
78 cd03359 LbH_Dynactin_5 Dynacti 99.6 2.2E-14 4.7E-19 113.8 15.6 57 184-240 90-147 (161)
79 TIGR02353 NRPS_term_dom non-ri 99.6 1.7E-14 3.7E-19 138.1 17.5 86 164-249 596-695 (695)
80 PRK05293 glgC glucose-1-phosph 99.6 2.1E-15 4.5E-20 135.8 10.3 148 5-178 230-377 (380)
81 COG0448 GlgC ADP-glucose pyrop 99.6 2.5E-15 5.5E-20 131.1 10.4 130 6-161 234-363 (393)
82 COG1208 GCD1 Nucleoside-diphos 99.6 1.7E-15 3.7E-20 134.7 8.8 117 6-154 208-324 (358)
83 PRK11132 cysE serine acetyltra 99.6 5.7E-15 1.2E-19 125.1 10.2 107 143-255 141-247 (273)
84 PLN02241 glucose-1-phosphate a 99.6 3.9E-15 8.4E-20 136.2 8.9 182 5-232 253-434 (436)
85 COG0110 WbbJ Acetyltransferase 99.6 1.2E-14 2.6E-19 118.4 10.7 59 198-256 121-179 (190)
86 PLN02694 serine O-acetyltransf 99.6 1.9E-14 4.2E-19 121.9 12.0 107 143-255 160-266 (294)
87 TIGR02353 NRPS_term_dom non-ri 99.6 9.7E-14 2.1E-18 133.0 18.2 92 165-256 353-458 (695)
88 PLN02739 serine acetyltransfer 99.6 7.5E-15 1.6E-19 126.8 9.0 107 143-255 205-311 (355)
89 TIGR03308 phn_thr-fam phosphon 99.6 9.7E-14 2.1E-18 114.0 15.0 50 181-232 106-155 (204)
90 PLN02296 carbonate dehydratase 99.6 1.5E-13 3.2E-18 116.9 16.0 140 54-243 54-197 (269)
91 cd04745 LbH_paaY_like paaY-lik 99.6 2.1E-13 4.6E-18 107.4 15.0 59 183-241 78-137 (155)
92 TIGR02287 PaaY phenylacetic ac 99.6 9.4E-14 2E-18 112.8 13.3 60 182-241 85-145 (192)
93 TIGR01172 cysE serine O-acetyl 99.6 7.4E-14 1.6E-18 110.7 12.4 50 201-250 113-162 (162)
94 TIGR01208 rmlA_long glucose-1- 99.6 1.5E-14 3.3E-19 129.0 9.3 104 6-117 208-316 (353)
95 cd03349 LbH_XAT Xenobiotic acy 99.5 1.1E-13 2.3E-18 107.6 12.7 135 106-265 2-139 (145)
96 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 4E-13 8.8E-18 112.3 16.8 161 14-239 50-215 (231)
97 PLN02472 uncharacterized prote 99.5 2.6E-13 5.6E-18 114.0 15.5 59 182-240 142-201 (246)
98 TIGR00965 dapD 2,3,4,5-tetrahy 99.5 2.4E-13 5.2E-18 114.2 15.2 145 42-237 96-240 (269)
99 PRK10191 putative acyl transfe 99.5 8.6E-14 1.9E-18 107.8 11.3 102 143-251 41-142 (146)
100 KOG4750 Serine O-acetyltransfe 99.5 2.5E-14 5.5E-19 114.6 8.0 90 165-258 168-257 (269)
101 cd04649 LbH_THP_succinylT_puta 99.5 1.7E-13 3.6E-18 104.6 11.9 70 165-238 31-108 (147)
102 cd04649 LbH_THP_succinylT_puta 99.5 4E-13 8.7E-18 102.5 12.8 38 183-222 73-110 (147)
103 KOG1322 GDP-mannose pyrophosph 99.5 1.7E-14 3.8E-19 122.0 4.9 137 1-159 212-350 (371)
104 TIGR03570 NeuD_NnaD sugar O-ac 99.5 7.8E-13 1.7E-17 108.3 14.6 47 182-230 152-198 (201)
105 cd03360 LbH_AT_putative Putati 99.5 8.9E-13 1.9E-17 107.1 14.7 47 182-230 149-195 (197)
106 PLN02357 serine acetyltransfer 99.5 1.7E-13 3.7E-18 119.3 10.6 107 143-255 226-332 (360)
107 COG1045 CysE Serine acetyltran 99.5 2.4E-13 5.2E-18 107.7 10.1 53 201-253 119-171 (194)
108 KOG1461 Translation initiation 99.5 1.5E-13 3.2E-18 125.0 9.9 130 21-183 291-420 (673)
109 PRK02862 glgC glucose-1-phosph 99.5 1.1E-13 2.4E-18 126.4 7.8 101 5-110 245-346 (429)
110 cd03354 LbH_SAT Serine acetylt 99.5 1.2E-12 2.6E-17 95.6 11.8 98 145-248 4-101 (101)
111 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 1.7E-12 3.7E-17 110.0 14.0 144 42-236 99-242 (272)
112 cd04647 LbH_MAT_like Maltose O 99.5 1.4E-12 3.1E-17 96.3 11.6 56 197-252 54-109 (109)
113 cd04650 LbH_FBP Ferripyochelin 99.4 3.1E-12 6.8E-17 100.6 14.0 58 182-239 77-135 (154)
114 COG2171 DapD Tetrahydrodipicol 99.4 5.7E-13 1.2E-17 110.3 8.7 26 199-224 198-223 (271)
115 TIGR02092 glgD glucose-1-phosp 99.4 6.3E-13 1.4E-17 119.3 9.0 131 5-161 225-356 (369)
116 TIGR03536 DapD_gpp 2,3,4,5-tet 99.4 3.2E-12 6.9E-17 108.6 12.6 37 184-222 251-287 (341)
117 PRK00844 glgC glucose-1-phosph 99.4 6.1E-13 1.3E-17 120.8 8.3 124 14-160 256-382 (407)
118 KOG1460 GDP-mannose pyrophosph 99.4 3.3E-12 7.1E-17 106.9 9.9 120 2-123 233-358 (407)
119 PRK10502 putative acyl transfe 99.4 1.1E-11 2.3E-16 100.3 12.6 50 181-232 122-171 (182)
120 KOG1461 Translation initiation 99.4 2.3E-12 4.9E-17 117.4 8.9 86 69-180 314-399 (673)
121 TIGR03536 DapD_gpp 2,3,4,5-tet 99.4 9.9E-12 2.1E-16 105.6 12.0 104 105-236 172-283 (341)
122 PRK09527 lacA galactoside O-ac 99.4 1.4E-11 3.1E-16 100.6 12.6 57 181-239 129-186 (203)
123 TIGR03535 DapD_actino 2,3,4,5- 99.3 1.5E-11 3.2E-16 104.1 11.9 106 105-239 147-261 (319)
124 TIGR02091 glgC glucose-1-phosp 99.3 2.5E-12 5.4E-17 115.0 7.9 128 6-158 231-359 (361)
125 PRK09677 putative lipopolysacc 99.3 3.9E-11 8.4E-16 97.8 13.8 118 104-241 64-187 (192)
126 cd05635 LbH_unknown Uncharacte 99.3 3.2E-11 7E-16 87.8 11.6 85 52-159 11-95 (101)
127 PRK10092 maltose O-acetyltrans 99.3 3.2E-11 7E-16 97.3 12.7 52 179-232 125-176 (183)
128 cd03357 LbH_MAT_GAT Maltose O- 99.3 2.3E-11 5E-16 97.2 11.4 51 179-231 114-164 (169)
129 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 3.1E-11 6.8E-16 84.4 10.3 79 55-156 2-80 (81)
130 cd03358 LbH_WxcM_N_like WcxM-l 99.3 7.3E-11 1.6E-15 88.6 13.0 100 57-182 3-102 (119)
131 cd05824 LbH_M1P_guanylylT_C Ma 99.3 3.8E-11 8.3E-16 83.7 10.3 65 56-121 3-67 (80)
132 PRK11132 cysE serine acetyltra 99.3 6.3E-11 1.4E-15 100.6 13.3 50 183-234 193-243 (273)
133 TIGR03535 DapD_actino 2,3,4,5- 99.3 5.1E-11 1.1E-15 100.8 12.0 38 184-223 226-263 (319)
134 PRK00725 glgC glucose-1-phosph 99.3 1.2E-11 2.5E-16 113.0 8.3 131 6-159 249-393 (425)
135 cd05824 LbH_M1P_guanylylT_C Ma 99.3 8.2E-11 1.8E-15 82.1 10.2 66 73-159 2-67 (80)
136 cd03356 LbH_G1P_AT_C_like Left 99.3 8.7E-11 1.9E-15 81.6 10.2 65 55-121 2-66 (79)
137 PLN02739 serine acetyltransfer 99.2 2.6E-10 5.7E-15 98.8 14.7 55 182-238 256-311 (355)
138 cd03356 LbH_G1P_AT_C_like Left 99.2 1.2E-10 2.6E-15 80.9 9.6 65 73-159 2-66 (79)
139 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.5E-10 3.2E-15 80.9 10.1 77 73-176 2-78 (81)
140 cd05787 LbH_eIF2B_epsilon eIF- 99.2 1.4E-10 3.1E-15 80.4 9.9 65 55-121 2-66 (79)
141 cd05825 LbH_wcaF_like wcaF-lik 99.2 3.1E-10 6.8E-15 83.7 11.5 50 179-230 52-101 (107)
142 TIGR01172 cysE serine O-acetyl 99.2 3E-10 6.6E-15 90.0 12.2 88 51-161 60-149 (162)
143 cd05787 LbH_eIF2B_epsilon eIF- 99.2 2.2E-10 4.8E-15 79.4 9.5 65 73-159 2-66 (79)
144 PLN02694 serine O-acetyltransf 99.2 3.3E-10 7.1E-15 96.4 12.1 84 53-159 161-246 (294)
145 cd04651 LbH_G1P_AT_C Glucose-1 99.2 4.3E-10 9.4E-15 82.5 10.1 79 59-161 2-80 (104)
146 PRK05293 glgC glucose-1-phosph 99.1 1E-09 2.2E-14 98.9 14.0 132 8-158 240-379 (380)
147 COG1208 GCD1 Nucleoside-diphos 99.1 1.6E-09 3.6E-14 96.5 14.7 106 8-116 217-324 (358)
148 PLN02241 glucose-1-phosphate a 99.1 6.9E-10 1.5E-14 101.7 12.2 50 185-235 375-425 (436)
149 PRK10191 putative acyl transfe 99.1 1.5E-09 3.2E-14 84.2 11.5 87 47-161 42-128 (146)
150 KOG3121 Dynactin, subunit p25 99.1 3E-10 6.5E-15 84.9 7.1 19 142-160 83-101 (184)
151 cd05635 LbH_unknown Uncharacte 99.1 1.8E-09 3.8E-14 78.7 10.4 81 41-121 12-95 (101)
152 cd03354 LbH_SAT Serine acetylt 99.1 3.2E-09 6.9E-14 77.4 11.7 48 181-230 52-99 (101)
153 cd04651 LbH_G1P_AT_C Glucose-1 99.1 1.7E-09 3.6E-14 79.3 10.0 76 77-180 2-77 (104)
154 cd00208 LbetaH Left-handed par 99.1 1.2E-09 2.6E-14 75.3 8.7 35 200-234 43-77 (78)
155 cd00208 LbetaH Left-handed par 99.0 2.1E-09 4.5E-14 74.1 9.0 32 55-86 3-34 (78)
156 KOG1462 Translation initiation 99.0 7.4E-10 1.6E-14 96.0 7.4 83 67-176 331-413 (433)
157 PLN02357 serine acetyltransfer 99.0 3.2E-09 6.9E-14 92.8 10.5 86 53-161 227-314 (360)
158 cd03349 LbH_XAT Xenobiotic acy 99.0 8.3E-09 1.8E-13 80.2 11.5 50 180-231 70-119 (145)
159 cd04647 LbH_MAT_like Maltose O 99.0 9.2E-09 2E-13 75.8 11.2 49 180-230 55-103 (109)
160 TIGR01208 rmlA_long glucose-1- 99.0 5.3E-09 1.1E-13 93.4 11.6 50 71-121 249-298 (353)
161 COG1045 CysE Serine acetyltran 99.0 6.1E-09 1.3E-13 82.8 10.5 54 181-235 117-170 (194)
162 KOG4042 Dynactin subunit p27/W 98.9 3.7E-09 7.9E-14 79.8 7.7 169 59-268 9-177 (190)
163 PRK00844 glgC glucose-1-phosph 98.9 2.7E-08 5.8E-13 90.5 13.6 111 8-122 258-382 (407)
164 COG0110 WbbJ Acetyltransferase 98.9 2.9E-08 6.3E-13 80.7 11.3 55 180-236 121-176 (190)
165 COG2171 DapD Tetrahydrodipicol 98.8 2.5E-08 5.5E-13 83.0 9.1 112 46-184 108-219 (271)
166 TIGR02091 glgC glucose-1-phosp 98.8 7.9E-08 1.7E-12 86.0 12.3 111 8-121 240-360 (361)
167 KOG1460 GDP-mannose pyrophosph 98.8 2.9E-08 6.4E-13 83.5 8.5 69 71-160 289-357 (407)
168 KOG1462 Translation initiation 98.8 2.4E-08 5.3E-13 86.7 8.2 84 83-193 329-412 (433)
169 PRK02862 glgC glucose-1-phosph 98.8 4.8E-08 1E-12 89.4 10.7 38 82-121 303-340 (429)
170 PRK00725 glgC glucose-1-phosph 98.7 2.2E-07 4.8E-12 85.0 13.5 70 51-123 326-395 (425)
171 KOG1322 GDP-mannose pyrophosph 98.6 6.4E-08 1.4E-12 82.6 6.2 104 42-176 242-345 (371)
172 KOG3121 Dynactin, subunit p25 98.6 1E-07 2.2E-12 71.5 6.0 68 165-233 84-151 (184)
173 KOG4750 Serine O-acetyltransfe 98.6 2E-07 4.2E-12 75.4 7.3 52 183-236 200-252 (269)
174 KOG4042 Dynactin subunit p27/W 98.6 2.7E-07 5.9E-12 69.8 7.2 132 91-249 11-145 (190)
175 TIGR02092 glgD glucose-1-phosp 98.5 5.6E-07 1.2E-11 80.8 9.5 61 75-159 277-337 (369)
176 COG0448 GlgC ADP-glucose pyrop 98.3 6.9E-06 1.5E-10 72.5 10.1 60 76-159 285-344 (393)
177 PF14602 Hexapep_2: Hexapeptid 98.2 2.2E-06 4.7E-11 49.1 4.1 34 201-236 1-34 (34)
178 COG4801 Predicted acyltransfer 98.2 1.3E-05 2.8E-10 65.3 8.8 81 181-266 54-134 (277)
179 COG4801 Predicted acyltransfer 98.0 0.00016 3.4E-09 59.1 12.4 29 75-103 55-83 (277)
180 PF00132 Hexapep: Bacterial tr 98.0 8.7E-06 1.9E-10 47.3 3.0 34 202-235 2-35 (36)
181 PF14602 Hexapep_2: Hexapeptid 97.9 2E-05 4.4E-10 45.0 3.3 32 184-217 2-33 (34)
182 PF00132 Hexapep: Bacterial tr 97.8 2.2E-05 4.7E-10 45.6 2.8 33 184-216 2-34 (36)
183 PF07959 Fucokinase: L-fucokin 88.7 0.73 1.6E-05 42.2 4.8 35 71-106 285-319 (414)
184 PF07959 Fucokinase: L-fucokin 88.1 1.6 3.5E-05 39.9 6.7 42 97-159 276-317 (414)
185 COG1209 RfbA dTDP-glucose pyro 83.1 0.072 1.6E-06 45.2 -4.2 30 5-35 208-237 (286)
186 PF04519 Bactofilin: Polymer-f 78.2 8.1 0.00018 27.6 5.7 8 61-68 5-12 (101)
187 PRK13412 fkp bifunctional fuco 61.1 12 0.00026 38.0 4.4 35 70-104 336-370 (974)
188 PRK13412 fkp bifunctional fuco 57.8 18 0.0004 36.7 5.1 59 49-108 333-392 (974)
189 PF13720 Acetyltransf_11: Udp 46.8 11 0.00024 26.1 1.2 15 237-251 1-15 (83)
190 COG1664 CcmA Integral membrane 31.5 2.4E+02 0.0053 21.7 7.4 15 106-120 85-99 (146)
191 KOG2638 UDP-glucose pyrophosph 20.6 1.1E+02 0.0023 28.2 3.1 14 73-86 450-463 (498)
No 1
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=100.00 E-value=1.4e-37 Score=271.71 Aligned_cols=249 Identities=41% Similarity=0.662 Sum_probs=214.3
Q ss_pred ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECC
Q 024191 14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ 93 (271)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~ 93 (271)
+.+...|.....+|...... ...+++++.+++++.|++++.|+++++|+++++||+++.|+++++|+++++||+
T Consensus 71 ~~p~~~~~~~~~~~~~~~~~------~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~ 144 (324)
T TIGR01853 71 KDPYLAFAKVAELFDPPPKR------EAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGD 144 (324)
T ss_pred CCHHHHHHHHHHHhcccccc------cCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCC
Confidence 45555565555555322211 233566677777777888888888888888888888888888888888888888
Q ss_pred CCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191 94 STNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS 172 (271)
Q Consensus 94 ~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~ 172 (271)
+|.|++++.| .+++||++|.|+++++|+.+.|.+.....+.....++.+.++||+++.|++++++..+++.++.||+++
T Consensus 145 ~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~ 224 (324)
T TIGR01853 145 GSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGT 224 (324)
T ss_pred CceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCc
Confidence 8888888888 489999999999999999998888765545556666677899999999999999999888999999999
Q ss_pred EECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191 173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252 (271)
Q Consensus 173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i 252 (271)
++++.+++++++.||++|.+.+++.+.++++||++|++|+++.|.++++||++++|++++.|++|+|+++++.|+||+.+
T Consensus 225 ~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~ 304 (324)
T TIGR01853 225 KIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPPPGVYGGIPARPN 304 (324)
T ss_pred EEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEeCCcCCCCcEEEccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhccccc
Q 024191 253 HEWRRQVANQIRSSKK 268 (271)
Q Consensus 253 ~~~~~~~~~~~r~~~~ 268 (271)
++|.|.+..+.||.+.
T Consensus 305 ~~~~~~~~~~~~l~~~ 320 (324)
T TIGR01853 305 KEWLRIAAKVKRLPEL 320 (324)
T ss_pred HHHHHHHHHHhccHhH
Confidence 9999999999988643
No 2
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=100.00 E-value=2e-37 Score=262.99 Aligned_cols=247 Identities=44% Similarity=0.711 Sum_probs=217.6
Q ss_pred ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECC
Q 024191 14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ 93 (271)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~ 93 (271)
+.+.+.|....++|..... ...-+.+.+.|++++.+++++.|+++++|++++.||+++.|+++|+|++++.||+
T Consensus 79 ~~P~~~fA~~~~~f~~~~~------~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~ 152 (338)
T COG1044 79 KDPYLAFAKVAQLFYRPFN------PAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGD 152 (338)
T ss_pred CCchHHHHHHHHHhccCCc------cccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECC
Confidence 4466777777777763322 1233455677888888888888888888888888888899999999988899999
Q ss_pred CCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191 94 STNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS 172 (271)
Q Consensus 94 ~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~ 172 (271)
++.|..++.| .++.||++|.|+++++|+.+.|.+.--..+ +...++.+..+||++++||.|+.|..+.+.++.|++++
T Consensus 153 ~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g-~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~ 231 (338)
T COG1044 153 GTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGV 231 (338)
T ss_pred CcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCC-ceEcceeceEEECCceEEcccceeccccccCceecCCc
Confidence 9999999998 669999999999999999999998865555 77778889999999999999999999999999999999
Q ss_pred EECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191 173 KIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252 (271)
Q Consensus 173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i 252 (271)
+|++.++|+|+|.||++|.|..++.|.+.+.||++|.||+.+-|..+..|+|++.|.+.+-|.+++|++..+.|.|+.++
T Consensus 232 kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~~~gg~P~~p~ 311 (338)
T COG1044 232 KIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPGYSGGIPAQPI 311 (338)
T ss_pred EEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccccccccCCCceeccCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997788999999
Q ss_pred hHHHHHHHHhhcccc
Q 024191 253 HEWRRQVANQIRSSK 267 (271)
Q Consensus 253 ~~~~~~~~~~~r~~~ 267 (271)
++|.|....+.++..
T Consensus 312 k~w~k~~a~~~~l~~ 326 (338)
T COG1044 312 KEWLKTAALIRRLPE 326 (338)
T ss_pred HHHHHHHHHHhhCHH
Confidence 999987777666544
No 3
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=100.00 E-value=2e-35 Score=261.38 Aligned_cols=225 Identities=44% Similarity=0.677 Sum_probs=196.7
Q ss_pred cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCE
Q 024191 41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC 119 (271)
Q Consensus 41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~ 119 (271)
..+.+++.+++++++++++.|+++++|++++.||+++.|+++|+|++++.||++|.|+.++.| .++.|+++|.|++++.
T Consensus 101 ~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~ 180 (343)
T PRK00892 101 AGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAV 180 (343)
T ss_pred CcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCE
Confidence 344556667777777777777777777777777777777777777777788888888888888 5677999999999999
Q ss_pred ECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec
Q 024191 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA 199 (271)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~ 199 (271)
|+.+.|++. ...+.....++.+.++||+++.|+++++|..+...++.||+++++++.++|++++.||+++.+++++.+.
T Consensus 181 Ig~~~f~~~-~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~ 259 (343)
T PRK00892 181 IGSDGFGFA-NDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIA 259 (343)
T ss_pred EeccCcCcc-cCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeec
Confidence 999888887 4455566666677999999999999999998888899999999999999999999999999999999999
Q ss_pred cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCC-CCeEEcCCCchhhHHHHHHHHhhccc
Q 024191 200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITE-PGDYGGFPAVPIHEWRRQVANQIRSS 266 (271)
Q Consensus 200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~-~~~~~g~p~~~i~~~~~~~~~~~r~~ 266 (271)
++++||++|+|+.++.|.++++||++++|++++.|.+|+|+ +..+.|+||+++++|.|.+..+.||-
T Consensus 260 ~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~~~~~~~G~pa~~~~~~~~~~~~~~~l~ 327 (343)
T PRK00892 260 GSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEPGEYSSGIPAQPNKEWLRTAARLRRLD 327 (343)
T ss_pred CCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccCCCCeEEEeecCchHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999 77889999999999999998888775
No 4
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=100.00 E-value=4.6e-33 Score=224.20 Aligned_cols=185 Identities=29% Similarity=0.418 Sum_probs=159.0
Q ss_pred cEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceec
Q 024191 59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK 137 (271)
Q Consensus 59 ~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~ 137 (271)
++|.+.++|++++.|++++.||+.|+|++++.|+++++|+.++.| ..++||+++.|.+.+.|+..+ +...+
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~p--------QdlKy 75 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDP--------QDLKY 75 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCC--------ccccc
Confidence 344455555556666666777777777777777777777777777 678899999999999998654 44555
Q ss_pred CCceeceEECCCcEECCccEEeCCCcC---CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEcccc
Q 024191 138 KPQLLNARIGNHVEIGANSCIDRGSWR---DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV 214 (271)
Q Consensus 138 ~~~~~~~~Ig~~~~I~~~~~i~~~~~~---~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~ 214 (271)
..+....+||+++.|.+++++..++.. .+.||++..++.++++.|||.||++|.+.+++++.+++.|||++.||+-+
T Consensus 76 kge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 76 KGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred CCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 666779999999999999999998864 48999999999999999999999999999999999999999999999999
Q ss_pred EECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191 215 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 251 (271)
Q Consensus 215 ~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~ 251 (271)
-|.+.++||++++|++.|.|.+|+||+.++.|+|+..
T Consensus 156 aVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l 192 (260)
T COG1043 156 AVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARL 192 (260)
T ss_pred eEEEEEEEcchheeccccccccCCCCeEEecCCcccc
Confidence 9999999999999999999999999999988888765
No 5
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00 E-value=1.7e-31 Score=225.88 Aligned_cols=184 Identities=29% Similarity=0.417 Sum_probs=141.7
Q ss_pred EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 128 (271)
Q Consensus 49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~ 128 (271)
|+|++.|+++++|++++.|+++++|++++.||++|.|++++.|.. ++.||+++.|++++.|+..+.++.
T Consensus 2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~-----------~~~IG~~~~I~~~a~Ig~~pq~~~ 70 (255)
T PRK12461 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILG-----------PTRIGKNNKIHQGAVVGDEPQDFT 70 (255)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeC-----------CCEECCCCEEccCcEeCCCCcccc
Confidence 455555555555555555555555555555555544444444433 455666666777777764432221
Q ss_pred EccCCceecCCceeceEECCCcEECCccEEeCCCc--CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECC
Q 024191 129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGD 206 (271)
Q Consensus 129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~--~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~ 206 (271)
+..+...+.||+++.|+++++|..++. ..+.||+++.++.++++++++.||++|++++++.+.++++|||
T Consensus 71 --------~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd 142 (255)
T PRK12461 71 --------YKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGD 142 (255)
T ss_pred --------ccCccceeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECC
Confidence 112223789999999999999987653 4689999999999999999999999999999999999999999
Q ss_pred CcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191 207 YVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 251 (271)
Q Consensus 207 ~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~ 251 (271)
+++|++++.|.++++||++++|++++.|.+|+||++++.|+||+.
T Consensus 143 ~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~ 187 (255)
T PRK12461 143 RAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCMMAGHPTNV 187 (255)
T ss_pred CeEEeCCCEECCCCEECCCcEECCCceEeccCCCCeEEecCcceE
Confidence 999999999999999999999999999999999999999999984
No 6
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=100.00 E-value=1.8e-30 Score=214.28 Aligned_cols=200 Identities=50% Similarity=0.793 Sum_probs=158.8
Q ss_pred ECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCC
Q 024191 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHG 133 (271)
Q Consensus 55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ 133 (271)
+++++.|++.+.|++++.|++++.|+++++|.+++.|++++.|+.++.| .+++|++++.|++++.|+...|++.... +
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~-~ 82 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDG-G 82 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecC-C
Confidence 3444444444444444555555555555555555555566666666655 3477888888888888887666554433 3
Q ss_pred ceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccc
Q 024191 134 NMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGR 213 (271)
Q Consensus 134 ~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~ 213 (271)
.....+..+.+.|++++.+++++.+......++.|++++.+++++.+++++.++++++++.++.+.+++.||++|+|+++
T Consensus 83 ~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~ 162 (205)
T cd03352 83 GWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQ 162 (205)
T ss_pred cEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCC
Confidence 33344455689999999999999998765678999999999999999999999999999999999999999999999999
Q ss_pred cEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191 214 VAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 214 ~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~ 255 (271)
++|.++++|+++++|++++.|.+|+|++.+|.|+||+.+++|
T Consensus 163 ~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~~~G~pa~~~~~~ 204 (205)
T cd03352 163 VGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQPHREW 204 (205)
T ss_pred CEEeCCcEECCCCEEcCCCEEeeECCCCCEEEeecCchhhhc
Confidence 999999999999999999999999999999999999998776
No 7
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.97 E-value=3.3e-30 Score=219.72 Aligned_cols=186 Identities=28% Similarity=0.393 Sum_probs=142.4
Q ss_pred EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCcee
Q 024191 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF 127 (271)
Q Consensus 48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~ 127 (271)
.|+++|.|++.++|++++.|+++++|++++.||++|.|.+++.|.. +++||++|.|++++.|+..+.+.
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g-----------~~~IG~~~~I~~~a~Ig~~~q~~ 72 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDG-----------HTTIGKNNRIFPFASIGEDPQDL 72 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcC-----------ccEECCCCEEcccceecCCceee
Confidence 3555555555555555555555555555555555555444444443 45566666666677765433221
Q ss_pred EEccCCceecCCceeceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEE
Q 024191 128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATI 204 (271)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~I 204 (271)
- +......+.||+++.|+++++|..++. ..+.||+++.++.++++++++.||+++.+++++.+.++++|
T Consensus 73 ~--------~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~I 144 (262)
T PRK05289 73 K--------YKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEV 144 (262)
T ss_pred c--------ccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCcccccccccc
Confidence 1 011123799999999999999987642 35899999999999999999999999999999999999999
Q ss_pred CCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191 205 GDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252 (271)
Q Consensus 205 g~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i 252 (271)
||+|+||+++.|.++++||++++|+++|+|.+|+||++++.|+|++.+
T Consensus 145 gd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~ 192 (262)
T PRK05289 145 GDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLR 192 (262)
T ss_pred CCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeEEecccCeEe
Confidence 999999999999999999999999999999999999999999999864
No 8
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.97 E-value=1.9e-28 Score=208.43 Aligned_cols=184 Identities=28% Similarity=0.382 Sum_probs=127.4
Q ss_pred EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 128 (271)
Q Consensus 49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~ 128 (271)
|++++.|++++.|+++++|++++.|++++.||++|.|.+++.|+.+ +.||++|.|++++.|+....+..
T Consensus 2 I~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~-----------v~IG~~~~I~~~a~I~~~~~~~~ 70 (254)
T cd03351 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGP-----------TTIGKNNRIFPFASIGEAPQDLK 70 (254)
T ss_pred cCCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCC-----------eEECCCCEEecceeecCccccee
Confidence 4444555555555555444444444444444444444444444333 33444444555555543221110
Q ss_pred EccCCceecCCceeceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEEC
Q 024191 129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIG 205 (271)
Q Consensus 129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig 205 (271)
. ......+.||+++.|+++++|..+.. ..+.||+++.++.++++++++.||++|++++++.+.++++||
T Consensus 71 ~--------~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Ig 142 (254)
T cd03351 71 Y--------KGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIG 142 (254)
T ss_pred e--------cCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeC
Confidence 0 00012677888888888887765433 258999999999999999999999999999999999999999
Q ss_pred CCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191 206 DYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 251 (271)
Q Consensus 206 ~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~ 251 (271)
++|+|++++.|.++++|+++++|++++.|.+++|+++++.|.|++.
T Consensus 143 d~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~ 188 (254)
T cd03351 143 DYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIAAGNRARL 188 (254)
T ss_pred CCcEECCcceECCCcEECCCCEECcCCEEeeecCCCeEEEccCCeE
Confidence 9999999999999999999999999999999999999988888864
No 9
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.96 E-value=3.4e-28 Score=206.91 Aligned_cols=109 Identities=29% Similarity=0.419 Sum_probs=101.6
Q ss_pred ceEECCCcEECCccEEeCCCc---CCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCC
Q 024191 143 NARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDH 219 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~---~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~ 219 (271)
.+.||+++.|+++++|..+.. .++.||+++.+..++++.+++.||++++++.++.+.++++|||+|+|++++.|.++
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~ 155 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF 155 (254)
T ss_pred eEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC
Confidence 788888888888888876543 36899999999999999999999999999999999999999999999999999999
Q ss_pred CEECCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191 220 VSIASKVRLAANSCVFKDITEPGDYGGFPAVP 251 (271)
Q Consensus 220 ~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~ 251 (271)
++|+++++|++++.|.+++|+++++.|+|++.
T Consensus 156 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~pa~~ 187 (254)
T TIGR01852 156 VRIGRYAMIGGLSAVSKDVPPYGLVEGNRARL 187 (254)
T ss_pred cEECCCCEEeeeeeEeeecCCCcEEecCcCee
Confidence 99999999999999999999999999999987
No 10
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.96 E-value=5.6e-29 Score=228.57 Aligned_cols=224 Identities=22% Similarity=0.248 Sum_probs=180.7
Q ss_pred eeEEeeccccH--HHHHHHHhhhccCCCCCchhhhhhccc--------CCCcEEccCcEECCCcEECCCCEECcCcEECC
Q 024191 6 FVHYYRLTKTY--KQDFGRFCNLFSTKSDIESRQQFQKWH--------NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGA 75 (271)
Q Consensus 6 ~~~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~ 75 (271)
.++.|++ +++ |.++.+++++...+..+..... ..+. .....+++++.|++++.|++++.|+++++||+
T Consensus 207 ~v~~~~~-~~~~~~~~i~t~~dl~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~ 284 (451)
T TIGR01173 207 TVRAVQV-DDSDEVLGVNDRLQLAQLERILQRRIA-KKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGD 284 (451)
T ss_pred eEEEEEc-CChhheecCCCHHHHHHHHHHHHHHHH-HHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECC
Confidence 4777777 777 5556666666554332222111 1111 12234677788888888888888888888999
Q ss_pred CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCc
Q 024191 76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 155 (271)
Q Consensus 76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~ 155 (271)
++.|+++|.|. ++.|+++|.|++++.|.++.|+++|.|++++.|.. .++|++++.|+.+
T Consensus 285 ~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~i~~~~~Ig~~ 343 (451)
T TIGR01173 285 DVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRP--------------------GSVLGAGVHIGNF 343 (451)
T ss_pred CCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECC--------------------CCEECCCcEEccc
Confidence 99999999887 67899999999999999999999999999999974 7899999999999
Q ss_pred cEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEE
Q 024191 156 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRL 228 (271)
Q Consensus 156 ~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i 228 (271)
+.+. ++.||+++.+++.+.+ .++.||+++.|+.++.+.. +++|||+++||.++.|.++++||++++|
T Consensus 344 ~~i~-----~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 417 (451)
T TIGR01173 344 VETK-----NARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATI 417 (451)
T ss_pred eeec-----CcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEE
Confidence 9884 6799999999888777 4688888888888877754 6999999999999999999999999999
Q ss_pred cCCcEEeccCCCCCeEEcCCC-chhhHHHHH
Q 024191 229 AANSCVFKDITEPGDYGGFPA-VPIHEWRRQ 258 (271)
Q Consensus 229 ~~~s~v~~~~~~~~~~~g~p~-~~i~~~~~~ 258 (271)
+++++|.+|+|+++++.|.|+ +.++.|.+.
T Consensus 418 ~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~~ 448 (451)
T TIGR01173 418 AAGSTVTKDVPEGALAISRARQRNIEGWVRP 448 (451)
T ss_pred ccCCEECccCCCCcEEEccCceeeccccccc
Confidence 999999999999999987555 667777654
No 11
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=6.4e-28 Score=221.96 Aligned_cols=224 Identities=18% Similarity=0.243 Sum_probs=175.8
Q ss_pred eeEEeeccccH--HHHHHHHhhhccCCCCCchhhhhh------cccCCC-cEEccCcEECCCcEECCCCEECcCcEECCC
Q 024191 6 FVHYYRLTKTY--KQDFGRFCNLFSTKSDIESRQQFQ------KWHNGG-GIFHQSACIDSTVLIEVGAIVHSKAVLGAN 76 (271)
Q Consensus 6 ~~~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~ 76 (271)
-++.|.+ .++ |.++++++++++++..+....... ..+++. ..|++++.|++++.|+++|.|+++++||++
T Consensus 214 ~v~~~~~-~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~ 292 (459)
T PRK14355 214 RCLAFPV-ADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEG 292 (459)
T ss_pred eEEEEEc-CCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCC
Confidence 4778888 777 778899999999976444332111 123333 246666777777777777777777777777
Q ss_pred cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191 77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156 (271)
Q Consensus 77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~ 156 (271)
+.|+++++|. ++.|+++|.|+.++.+.+++|++++.|++++.+.. ++.|++++.|+.++
T Consensus 293 ~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~--------------------~~~i~~~~~ig~~~ 351 (459)
T PRK14355 293 CTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRP--------------------GTELSAHVKIGNFV 351 (459)
T ss_pred CEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECC--------------------CCEeCCCCEECCCc
Confidence 7777777776 57888888888888888999999999999999974 78899999999988
Q ss_pred EEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccccee-------ccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191 157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-------AGSATIGDYVTLGGRVAVRDHVSIASKVRLA 229 (271)
Q Consensus 157 ~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~ 229 (271)
.+ +++.||+++.+.+.+.+ .++.|+++|.|+.++.+ ..++.||++|+||.++.|.++++||++++|+
T Consensus 352 ~~-----~~~~ig~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~ 425 (459)
T PRK14355 352 ET-----KKIVMGEGSKASHLTYL-GDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIA 425 (459)
T ss_pred cc-----cCCEECCCceeeeeccc-cCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEEC
Confidence 66 46789999988777766 46777777777776654 2368999999999999999999999999999
Q ss_pred CCcEEeccCCCCCeEEc-CCCchhhHHHH
Q 024191 230 ANSCVFKDITEPGDYGG-FPAVPIHEWRR 257 (271)
Q Consensus 230 ~~s~v~~~~~~~~~~~g-~p~~~i~~~~~ 257 (271)
++|.|.+|+|+++++.| .|+...+.|++
T Consensus 426 a~s~v~~~v~~~~~~~~~~~~~~~~~~~~ 454 (459)
T PRK14355 426 AGTTVTKDVPPDSLAIARSPQVNKEGWKL 454 (459)
T ss_pred CCCEEcccCCCCcEEEeccceeccccccc
Confidence 99999999999999887 66666666643
No 12
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=2.9e-27 Score=217.51 Aligned_cols=214 Identities=19% Similarity=0.310 Sum_probs=174.4
Q ss_pred HHHHHHHhhhccCCC--CC-chhhhhhcccCCC-cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEEC
Q 024191 17 KQDFGRFCNLFSTKS--DI-ESRQQFQKWHNGG-GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG 92 (271)
Q Consensus 17 w~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~-~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig 92 (271)
|.++++++.++.++. .+ .... ....+. ..+...+.+++++.|+++|.|++++.||+++.|+++|.|. ++.|+
T Consensus 229 ~~di~~~~~y~~~~~~~~~l~~~~---~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig 304 (456)
T PRK09451 229 RLQLARLERVYQAEQAEKLLLAGV---MLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIG 304 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---EEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEc
Confidence 788999998887652 11 1111 001111 1244566778888899999998889999999999999997 78899
Q ss_pred CCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCc
Q 024191 93 QSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS 172 (271)
Q Consensus 93 ~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~ 172 (271)
++|.|++++.|.+++|++++.|++++.|.. .+.+++++.|++++.+. ++.|++++
T Consensus 305 ~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~i~~~~~ig~~~~i~-----~~~i~~~~ 359 (456)
T PRK09451 305 DDCEISPYSVVEDANLGAACTIGPFARLRP--------------------GAELAEGAHVGNFVEMK-----KARLGKGS 359 (456)
T ss_pred CCCEEcCCEEEeCCccCCCcEecCceEEeC--------------------CCEECCCceeccceeee-----ceeeCCCC
Confidence 999999999999999999999999999974 78899999999998884 57888888
Q ss_pred EECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE-
Q 024191 173 KIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY- 244 (271)
Q Consensus 173 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~- 244 (271)
.+++.+.+ .++.||++|.|+.++.+.. +++|||+|+||.+++|.++++|+++++|+++++|.+|+|+++.+
T Consensus 360 ~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~ 438 (456)
T PRK09451 360 KAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVI 438 (456)
T ss_pred ccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEE
Confidence 88877666 4577777777777765532 48999999999999999999999999999999999999999987
Q ss_pred EcCCCchhhHHHHHHH
Q 024191 245 GGFPAVPIHEWRRQVA 260 (271)
Q Consensus 245 ~g~p~~~i~~~~~~~~ 260 (271)
.|.|++.+++|.|..+
T Consensus 439 ~~~~~~~~~~~~~~~~ 454 (456)
T PRK09451 439 SRVPQRHIQGWQRPVK 454 (456)
T ss_pred eccCceeccccccccc
Confidence 5799999999987654
No 13
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.95 E-value=2.2e-26 Score=188.23 Aligned_cols=177 Identities=23% Similarity=0.330 Sum_probs=156.3
Q ss_pred CcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCc
Q 024191 46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF 125 (271)
Q Consensus 46 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~ 125 (271)
...+.+.++|++++.|++++.|+++++|++++.|++++.|.+. .|++++.|++++.+.++.|++++.|++++.|..
T Consensus 9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~--- 84 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP--- 84 (193)
T ss_pred eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEEeeEECCCCEECCccEEcC---
Confidence 3457778888888888888888888999999999999999865 899999999999999999999999999999974
Q ss_pred eeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec------
Q 024191 126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA------ 199 (271)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~------ 199 (271)
++.|++++.|+.++.+. ++.|++++.+.+...+ .++.|++++.|+.++.+.
T Consensus 85 -----------------~~~Ig~~~~Ig~~~~i~-----~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~ 141 (193)
T cd03353 85 -----------------GTVLGEGVHIGNFVEIK-----KSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVN 141 (193)
T ss_pred -----------------ccEECCCCEECCcEEEe-----cceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCcc
Confidence 78999999999998884 5788999999887777 578888888888877654
Q ss_pred -cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCC
Q 024191 200 -GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 249 (271)
Q Consensus 200 -~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~ 249 (271)
.+++|||+++++.++++.++++|+++++|+++++|.+|+|+++++.|.|.
T Consensus 142 ~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~~ 192 (193)
T cd03353 142 KHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARAR 192 (193)
T ss_pred ccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEeccC
Confidence 36899999999999999999999999999999999999999999998775
No 14
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=6.7e-27 Score=216.35 Aligned_cols=222 Identities=16% Similarity=0.193 Sum_probs=165.6
Q ss_pred eeEEeeccccHHHHHHHHhhh------ccCCCCCchhhhh-h-cccC-CCcEEccCcEECCCcEECCCCEECcCcEECCC
Q 024191 6 FVHYYRLTKTYKQDFGRFCNL------FSTKSDIESRQQF-Q-KWHN-GGGIFHQSACIDSTVLIEVGAIVHSKAVLGAN 76 (271)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~------~~~~~~~~~~~~~-~-~~~~-~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~ 76 (271)
-++.|++ +++|.+.+.++++ +..+..++..... . .... ..+.|++++.|++++.|++++.|.++++||++
T Consensus 217 ~V~~~~~-~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~ 295 (482)
T PRK14352 217 RVGAHHA-DDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGED 295 (482)
T ss_pred eEEEEec-CCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCC
Confidence 4788888 8999988766555 2233222221110 0 0111 13445566666666666666666666666666
Q ss_pred cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191 77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156 (271)
Q Consensus 77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~ 156 (271)
|.|+++|+|. +++|+++|.|++ +.+.+++|++++.|++++.+.. .++||+++.++.++
T Consensus 296 ~~I~~~~~i~-~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~--------------------~~vIg~~~~ig~~~ 353 (482)
T PRK14352 296 AVVGPDTTLT-DVTVGEGASVVR-THGSESEIGAGATVGPFTYLRP--------------------GTVLGEEGKLGAFV 353 (482)
T ss_pred CEECCCCEEe-cCEECCCCEEee-eeeecCEEcCCCEECCCeEecC--------------------CcEEcCCCEECCcE
Confidence 6666666665 456677777653 5668899999999999988864 88999999999888
Q ss_pred EEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec-------cCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191 157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA-------GSATIGDYVTLGGRVAVRDHVSIASKVRLA 229 (271)
Q Consensus 157 ~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~ 229 (271)
.+ .++.|++++.+++...+ .++.||++|.|+.++.+. .+++|||+++||.+++|.++++||++++|+
T Consensus 354 ~~-----~~~~I~~~~~i~~~~~i-~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~ig 427 (482)
T PRK14352 354 ET-----KNATIGRGTKVPHLTYV-GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTG 427 (482)
T ss_pred EE-----cccEECCCcEEccCcee-cccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEEC
Confidence 76 35788888888887666 467788888888777665 359999999999999999999999999999
Q ss_pred CCcEEeccCCCCCeE-EcCCCchhhHHH
Q 024191 230 ANSCVFKDITEPGDY-GGFPAVPIHEWR 256 (271)
Q Consensus 230 ~~s~v~~~~~~~~~~-~g~p~~~i~~~~ 256 (271)
++++|.+|+|+++++ .|.|++.++.|.
T Consensus 428 ags~v~~~v~~~~~~~~~~p~~~~~~~~ 455 (482)
T PRK14352 428 AGTVIREDVPPGALAVSEGPQRNIEGWV 455 (482)
T ss_pred CCCEEcCCCCCCcEEEeccccccccccc
Confidence 999999999999975 599999999885
No 15
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.95 E-value=5.4e-26 Score=193.37 Aligned_cols=202 Identities=24% Similarity=0.277 Sum_probs=175.6
Q ss_pred CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEECC
Q 024191 44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGD 110 (271)
Q Consensus 44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig~ 110 (271)
.+.+.|++++.|++++.|++++.|+++++||+++.|+++|+|.+++.||++|.|++++.|. ++.||+
T Consensus 3 ~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 82 (254)
T cd03351 3 HPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82 (254)
T ss_pred CCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence 4567899999999999999999999999999999999999999999999999999999994 689999
Q ss_pred CcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCC
Q 024191 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 190 (271)
Q Consensus 111 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 190 (271)
+|.|++++.|..... .+ ...++||+++.|+++++|. +++.||+++.+++++.+.+++.||++|
T Consensus 83 ~~~Ig~~~~I~~~~~----~~---------~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~~~v~Igd~~ 145 (254)
T cd03351 83 NNTIREFVTIHRGTA----QG---------GGVTRIGNNNLLMAYVHVA----HDCVIGNNVILANNATLAGHVEIGDYA 145 (254)
T ss_pred CCEECCccEEecccc----CC---------CCceEECCCCEECCCCEEC----CCCEECCCcEECCCccccCCcEeCCCc
Confidence 999999999974210 00 0269999999999999997 679999999999999999999999999
Q ss_pred EEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHHHHHhhc
Q 024191 191 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIR 264 (271)
Q Consensus 191 ~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~r 264 (271)
+|+.++.+.++++||+++.|+++++|.++ |++++++.+.+.....+....+ ..|.|+..+.++.++++.+.|
T Consensus 146 ~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~ 218 (254)
T cd03351 146 IIGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIAAGNRARLRGLNLVGLKRRGFSREEIRALKRAYRILYR 218 (254)
T ss_pred EECCcceECCCcEECCCCEECcCCEEeee--cCCCeEEEccCCeEeccceeceeecCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999997 5889999887776666665554 358999888888888754433
No 16
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.94 E-value=1.3e-25 Score=189.92 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=174.6
Q ss_pred cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEEC
Q 024191 43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIG 109 (271)
Q Consensus 43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig 109 (271)
+++++.|++++.|++++.|+++|.|++++.||+++.|+++++|.+++.||+++.|++++.|. .+.||
T Consensus 2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG 81 (255)
T PRK12461 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG 81 (255)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence 45678899999999999999999999999999999999999999999999999999999984 47899
Q ss_pred CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCC
Q 024191 110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS 189 (271)
Q Consensus 110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~ 189 (271)
+++.|++++.|..... ....+.||+++.+..++++. +++.||+++.+.+++.+..++.||++
T Consensus 82 ~~~~I~e~vtI~~gt~--------------~g~~t~IG~~~~i~~~~~I~----hd~~IG~~v~i~~~~~i~g~v~Igd~ 143 (255)
T PRK12461 82 DRNVIREGVTIHRGTK--------------GGGVTRIGNDNLLMAYSHVA----HDCQIGNNVILVNGALLAGHVTVGDR 143 (255)
T ss_pred CceEECCccEEecCcc--------------cCCcEEEcccceeccCcEEC----CCCEECCCcEECCCCccCCceEECCC
Confidence 9999999999964210 01268899999999999887 68999999999999999999999999
Q ss_pred CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHHHHHhhccc
Q 024191 190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIRSS 266 (271)
Q Consensus 190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~r~~ 266 (271)
++++.++.+.++++||++++|+++++|.++ +++++++.+...-..-+..=.+ ..|++...++.++++++.++|..
T Consensus 144 a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~G~pa~~~~~n~vgl~r~g~~~~~~~~~~~~~~~~~~~~ 219 (255)
T PRK12461 144 AIISGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMAGHPTNVHGLNAVGLRRRGFSSRAIRALKRAYKIIYRSG 219 (255)
T ss_pred eEEeCCCEECCCCEECCCcEECCCceEecc--CCCCeEEecCcceEeccchhhhhhcCCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998 6888888765443333332222 46888899999999988887654
No 17
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.5e-26 Score=201.00 Aligned_cols=192 Identities=23% Similarity=0.338 Sum_probs=152.8
Q ss_pred hcccCCCcEEccC--cEECCCcEECCCCEECc------CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCC
Q 024191 40 QKWHNGGGIFHQS--ACIDSTVLIEVGAIVHS------KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDS 111 (271)
Q Consensus 40 ~~~~~~~~~i~~~--~~i~~~~~I~~~~~I~~------~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~ 111 (271)
.+|+..+..+..+ .+|+..+.|++++.|++ ++.||++|.||++|+|. ++.|++++.|..++.|+++.|+++
T Consensus 248 ~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~ 326 (460)
T COG1207 248 EKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEG 326 (460)
T ss_pred HHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCC
Confidence 3555555443332 24445555555555555 45555555555555555 466888888888888899999999
Q ss_pred cEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCE
Q 024191 112 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM 191 (271)
Q Consensus 112 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ 191 (271)
+.||+.+.|.+ .+.+++++.||..+.+ +++.||++++.++-+++ .++.||.++.
T Consensus 327 ~~VGPfA~LRP--------------------g~~L~~~~hIGNFVEv-----K~a~ig~gsKa~HLtYl-GDA~iG~~~N 380 (460)
T COG1207 327 ATVGPFARLRP--------------------GAVLGADVHIGNFVEV-----KKATIGKGSKAGHLTYL-GDAEIGENVN 380 (460)
T ss_pred cccCCccccCC--------------------cCcccCCCeEeeeEEE-----ecccccCCccccceeee-ccceecCCce
Confidence 99999999986 8999999999999988 68899999999998888 6778888888
Q ss_pred Ecccceecc-------CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE-EcCCCchhhHHHHH
Q 024191 192 LCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRRQ 258 (271)
Q Consensus 192 i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~-~g~p~~~i~~~~~~ 258 (271)
||.++...+ .+.|||+++||+++.+...++||+++.|++||.+++|+|++++. +..+++.+..|.+.
T Consensus 381 iGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~egw~~~ 455 (460)
T COG1207 381 IGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNKEGWVRK 455 (460)
T ss_pred eccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeeccccccc
Confidence 877776543 49999999999999999999999999999999999999999984 67888999999775
No 18
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=6.1e-26 Score=208.25 Aligned_cols=203 Identities=16% Similarity=0.205 Sum_probs=116.0
Q ss_pred eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEcc-------CcEECCCcEECCCCEECcCcEECCCcE
Q 024191 6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQ-------SACIDSTVLIEVGAIVHSKAVLGANVC 78 (271)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~i~~~~~I~~~~~I~~~~~Ig~~v~ 78 (271)
.++.+......|.++.+++++..++..+........+......+++ ++.|++++.|++++.|++++.|++++.
T Consensus 215 ~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~ 294 (446)
T PRK14353 215 RVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAV 294 (446)
T ss_pred eEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCE
Confidence 4667777345688999999998776544332211222221122333 333333333333333333333333333
Q ss_pred ECCCCEECCCcEECCCCEECCccEEc-ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccE
Q 024191 79 IGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSC 157 (271)
Q Consensus 79 Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~ 157 (271)
|++++.|. ++.||++|.|++++.|. ++.||++|.|++++.+. +++|++++.++
T Consensus 295 I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~---------------------~~~i~~~~~i~---- 348 (446)
T PRK14353 295 IHAFSHLE-GAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVK---------------------NAKLGEGAKVN---- 348 (446)
T ss_pred ECCCeEEe-ccEECCCcEECCCeEEeccceecCCeEEcCceEEe---------------------ceEECCCCEEC----
Confidence 33333332 24444444444444442 44444444444444442 44444444444
Q ss_pred EeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccccee-------ccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 158 IDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-------AGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 158 i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
+++.+ .++.|+++|.|+.++.+ ..+++||++|+||++++|.++++||++++|++
T Consensus 349 ------------------~~~~i-~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~ 409 (446)
T PRK14353 349 ------------------HLTYI-GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIAS 409 (446)
T ss_pred ------------------CeeEE-cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECC
Confidence 43333 23444444444444433 34699999999999999999999999999999
Q ss_pred CcEEeccCCCCCeEEcCCCchhh
Q 024191 231 NSCVFKDITEPGDYGGFPAVPIH 253 (271)
Q Consensus 231 ~s~v~~~~~~~~~~~g~p~~~i~ 253 (271)
++.|.+|+|+++++.|.|....+
T Consensus 410 ~s~v~~~v~~~~~~~g~~~~~~~ 432 (446)
T PRK14353 410 GSVITEDVPDDALALGRARQETK 432 (446)
T ss_pred CCEECccCCCCCEEEecCceEec
Confidence 99999999999999999885533
No 19
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.94 E-value=2.7e-25 Score=189.47 Aligned_cols=205 Identities=24% Similarity=0.309 Sum_probs=170.6
Q ss_pred ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEE
Q 024191 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCII 108 (271)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~I 108 (271)
.+++++.|++++.|++++.|+++|.|+++++||+++.|+++++|.++++||++|.|++++.|. .+.|
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I 83 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI 83 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence 456788999999999999999999999999999999999999999999999999999999994 4889
Q ss_pred CCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECC
Q 024191 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGK 188 (271)
Q Consensus 109 g~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~ 188 (271)
|+++.|++++.|...... ....+.||+++.|+.++++. +++.||+++.+.+++.+..++.|++
T Consensus 84 G~~~~I~e~~~I~~~~~~-------------~~~~t~IG~~~~I~~~~~I~----h~~~IG~~v~i~~~~~i~g~v~Igd 146 (262)
T PRK05289 84 GDNNTIREFVTINRGTVQ-------------GGGVTRIGDNNLLMAYVHVA----HDCVVGNHVILANNATLAGHVEVGD 146 (262)
T ss_pred CCCCEECCCeEEeccccc-------------CCCeeEECCceEECCCCEEC----CeEEECCCeEECCccccccccccCC
Confidence 999999999999742100 01268999999999999997 6899999999999999999999999
Q ss_pred CCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCC-eEEcCCCchhhHHHHHHHHhhcc
Q 024191 189 SCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIRS 265 (271)
Q Consensus 189 ~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~-~~~g~p~~~i~~~~~~~~~~~r~ 265 (271)
+++++.++.+.++++||+++.|+++++|.++ +++++++.+...-...+..-. ...|.+...+..+.++++.+.+.
T Consensus 147 ~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~~G~pa~~~~~n~~g~~~~~~~~~~~~~i~~a~~~~~~~ 222 (262)
T PRK05289 147 YAIIGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLAEGNPARLRGLNLVGLKRRGFSREEIHALRRAYKLLYRS 222 (262)
T ss_pred cEEEeecceecCCCEECCCCEEeeecceecc--CCCCeEEecccCeEeccchhhhhhCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999986 467777754433222222111 24567777777777777666553
No 20
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=1.8e-25 Score=205.18 Aligned_cols=179 Identities=20% Similarity=0.282 Sum_probs=140.0
Q ss_pred EccC-cEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-----cceEECCCcEECCCCEECC
Q 024191 49 FHQS-ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQ 122 (271)
Q Consensus 49 i~~~-~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-----~~~~Ig~~~~I~~~~~i~~ 122 (271)
++++ +.++++++|++++.|++++.|++++.||++|+|++++.|. ++.|+++|.| .+++|++++.|++++.+..
T Consensus 245 ~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~ 323 (448)
T PRK14357 245 LDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLRE 323 (448)
T ss_pred eCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECC
Confidence 4443 3666666666666666666666666666666666666553 3555555554 6889999999999999863
Q ss_pred CCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceec---
Q 024191 123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA--- 199 (271)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~--- 199 (271)
.++||+++.|++++.+. ++.|++++.+.+.+.++ ++.||++|.|+.++.+.
T Consensus 324 --------------------~~~ig~~~~Ig~~~~i~-----~~~ig~~~~~~~~~~~~-~~~Ig~~~~ig~~~~~~~~~ 377 (448)
T PRK14357 324 --------------------GTVLKKSVKIGNFVEIK-----KSTIGENTKAQHLTYLG-DATVGKNVNIGAGTITCNYD 377 (448)
T ss_pred --------------------cccccCCcEecCceeee-----ccEEcCCcCcccccccc-CcEECCCcEECCCccccccc
Confidence 78999999999998874 47888888887776664 57777777777766543
Q ss_pred ----cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191 200 ----GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 254 (271)
Q Consensus 200 ----~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~ 254 (271)
.+++|||+++||.+++|.++++||+++.|+++++|.+|+|+++++.|.|++.+..
T Consensus 378 ~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~ 436 (448)
T PRK14357 378 GKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKE 436 (448)
T ss_pred ccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEecc
Confidence 4699999999999999999999999999999999999999999999999987653
No 21
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=2.1e-25 Score=205.17 Aligned_cols=218 Identities=15% Similarity=0.132 Sum_probs=175.1
Q ss_pred eeEEeecccc--HHHHHHHHhhhccCCCCCchhhhhhcccC--------CCcEEccCcEECCCcEECCCCEECcCcEECC
Q 024191 6 FVHYYRLTKT--YKQDFGRFCNLFSTKSDIESRQQFQKWHN--------GGGIFHQSACIDSTVLIEVGAIVHSKAVLGA 75 (271)
Q Consensus 6 ~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~ 75 (271)
.++.|.+ .+ .|.++.+++++..++..+..... ..++. .+..+++++.+++++.|.+++.|++++.||+
T Consensus 215 ~v~~~~~-~~~~~~~~I~tp~dl~~a~~~l~~~~~-~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~ 292 (456)
T PRK14356 215 NVLGVNC-GEDPNLLGVNTPAELVRSEELLRARIV-EKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIAR 292 (456)
T ss_pred eEEEEEc-CCcCeEecCcCHHHHHHHHHHHHHHHH-HHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECC
Confidence 4667776 44 45788889888877654443322 22322 2345666677777777777777777788888
Q ss_pred CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCc
Q 024191 76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 155 (271)
Q Consensus 76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~ 155 (271)
++.|+++|.|. +++|+++|.|++++.|.+++|++++.|++++.|.. .+.||+++.|+.+
T Consensus 293 ~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~ig~~~~ig~~ 351 (456)
T PRK14356 293 GAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP--------------------GAVLEEGARVGNF 351 (456)
T ss_pred CCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECC--------------------CCEECCCCEecCC
Confidence 88888888886 67899999999999999999999999999999974 7899999999999
Q ss_pred cEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccccee-------ccCcEECCCcEEccccEECCCCEECCCcEE
Q 024191 156 SCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-------AGSATIGDYVTLGGRVAVRDHVSIASKVRL 228 (271)
Q Consensus 156 ~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i 228 (271)
+.+. ++.+++++.+.+.+.++ ++.||+++.|+.++.+ ..+++|||++++|.++.|.++++||++++|
T Consensus 352 ~~i~-----~~~i~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i 425 (456)
T PRK14356 352 VEMK-----KAVLGKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALV 425 (456)
T ss_pred ceee-----eeEecCCcEeccccccc-CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEE
Confidence 8884 57899999998888775 5888888888887654 235999999999999999999999999999
Q ss_pred cCCcEEeccCCCCCeEEcCCCchh
Q 024191 229 AANSCVFKDITEPGDYGGFPAVPI 252 (271)
Q Consensus 229 ~~~s~v~~~~~~~~~~~g~p~~~i 252 (271)
+++++|.+|+|+++++.|-.....
T Consensus 426 ~~~~~v~~~~~~~~~~~~~~~~~~ 449 (456)
T PRK14356 426 GAGSVITKDVPDGSLAIARGRQKN 449 (456)
T ss_pred cCCCEEeccCCCCcEEEEecceee
Confidence 999999999999999877555443
No 22
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.93 E-value=1.5e-24 Score=184.57 Aligned_cols=204 Identities=26% Similarity=0.308 Sum_probs=168.6
Q ss_pred CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEECC
Q 024191 44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGD 110 (271)
Q Consensus 44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig~ 110 (271)
.+++.|++++.|++++.|++++.|++++.|++++.|+++|.|.+++.||+++.|++++.|. .+.||+
T Consensus 2 ~~~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 81 (254)
T TIGR01852 2 HPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD 81 (254)
T ss_pred CCCCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence 4567788888888888999999998889999999999999999889999999999999995 588999
Q ss_pred CcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCC
Q 024191 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSC 190 (271)
Q Consensus 111 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 190 (271)
+|.|++++.|...... ....++||+++.|+.++++. +++.||+++.+++++.+.+++.||+++
T Consensus 82 ~~~I~~~~~I~~~~~~-------------~~~~~~IG~~~~I~~~~~I~----~~~~Ig~~~~i~~~~~i~~~~~Igd~~ 144 (254)
T TIGR01852 82 NNTIREFVTINRGTAS-------------GGGVTRIGNNNLLMAYSHIA----HDCVVGNHVILANNATLAGHVEVGDYA 144 (254)
T ss_pred CCEECCCCEECCcccC-------------CCCcEEECCCCEECCCCEEc----cCCEECCCCEECCCCEECCCcEECCCc
Confidence 9999999999753200 00278999999999999997 679999999999999999999999999
Q ss_pred EEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCC-eEEcCCCchhhHHHHHHHHhhccc
Q 024191 191 MLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIRSS 266 (271)
Q Consensus 191 ~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~-~~~g~p~~~i~~~~~~~~~~~r~~ 266 (271)
+|+.++.+.++++|+++++|+++++|.++ |++++++.+.+...+...... ...|.+...+.++.++++.+.+..
T Consensus 145 ~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (254)
T TIGR01852 145 IIGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLVEGNRARLRGLNIVGLRRRGFSREDITAIKKAYRLLFRSG 219 (254)
T ss_pred EEeccCEECCCcEECCCCEEeeeeeEeee--cCCCcEEecCcCeecccceeeeecCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999986 899999988765554332111 235666666666666665555544
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=4.3e-25 Score=203.29 Aligned_cols=187 Identities=21% Similarity=0.340 Sum_probs=146.4
Q ss_pred EEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCcee
Q 024191 48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF 127 (271)
Q Consensus 48 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~ 127 (271)
.|++++.|++++.|++++.|.+++.||+++.|++++.|. ++.|+++|.|+ ++.+.++.|+++|.|++++.|..
T Consensus 261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~----- 333 (458)
T PRK14354 261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRP----- 333 (458)
T ss_pred EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEe-ccEECCCCEEE-EEEEeCCEECCCcEECCceEecC-----
Confidence 345555555555555555555555555555555555554 34566667666 34557889999999999999874
Q ss_pred EEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------
Q 024191 128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG------- 200 (271)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~------- 200 (271)
.+.||+++.|+.++.+. ++.|++++.+.+.+.+ .++.|+++|.++.++.+..
T Consensus 334 ---------------~~~Ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~~~~~~~~~ 392 (458)
T PRK14354 334 ---------------GSVIGEEVKIGNFVEIK-----KSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITVNYDGKNKF 392 (458)
T ss_pred ---------------CCEEeCCcEECCceEEe-----eeEECCCCEecceeee-cCcccCCceEEcCceeeccccccccc
Confidence 78999999999999885 5789999999888877 6688888888888877654
Q ss_pred CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCch-hhHHHHHHHHh
Q 024191 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP-IHEWRRQVANQ 262 (271)
Q Consensus 201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~-i~~~~~~~~~~ 262 (271)
+++|||++++|.++.|.++++||++++|+++++|.+|+|+++++.|.|+.. +..|.+.....
T Consensus 393 ~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (458)
T PRK14354 393 KTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARARQVNKEGYVKKLPHK 455 (458)
T ss_pred CCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEeccceecccchhhhhhhh
Confidence 699999999999999999999999999999999999999999999988854 66777665543
No 24
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=8.7e-25 Score=201.87 Aligned_cols=224 Identities=17% Similarity=0.208 Sum_probs=167.6
Q ss_pred eeEEeeccccHHHHHHHHhhhccCC-CCCchhhhhhccc-------CCCc-EEccCcEECCCcEECCCCEECcCcEECCC
Q 024191 6 FVHYYRLTKTYKQDFGRFCNLFSTK-SDIESRQQFQKWH-------NGGG-IFHQSACIDSTVLIEVGAIVHSKAVLGAN 76 (271)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~-~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~ 76 (271)
.+++|.+ .++|..++....+..++ .+++.......+. .+.+ .+.+++.|++++.|+++|+|++++.|+++
T Consensus 216 ~i~~~~~-~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~ 294 (481)
T PRK14358 216 QVRAFKL-SDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADG 294 (481)
T ss_pred eEEEEec-CCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCC
Confidence 4777887 78888776544332222 1122111111111 1222 24667778888888888888888888899
Q ss_pred cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191 77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156 (271)
Q Consensus 77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~ 156 (271)
+.|+++|+|. +++|+++|.|++++.|.+++||+++.|++++.+.. .+.||+++.|+.++
T Consensus 295 ~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~--------------------~~~Ig~~~~Ig~~~ 353 (481)
T PRK14358 295 VTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRP--------------------GTVLGEGVHIGNFV 353 (481)
T ss_pred CEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcC--------------------CcEECCCCEECCCE
Confidence 9999999986 56799999999999999999999999999999963 78999999999998
Q ss_pred EEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc-------CcEECCCcEEccccEECCCCEECCCcEEc
Q 024191 157 CIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLA 229 (271)
Q Consensus 157 ~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-------~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~ 229 (271)
.+. ++.|++++.+++.+.+ .++.||++|.|+.++.+.. ++.||++++||+++++.++++||++++|+
T Consensus 354 ~i~-----~~~i~~~~~ig~~~~~-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~ 427 (481)
T PRK14358 354 ETK-----NARLDAGVKAGHLAYL-GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIA 427 (481)
T ss_pred EEC-----CceecCCcccCceEEE-CCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEEC
Confidence 874 5677777777766555 4566666666666665542 58999999999999999999999999999
Q ss_pred CCcEEeccCCCCCeEE-cCCCchhhHHHH
Q 024191 230 ANSCVFKDITEPGDYG-GFPAVPIHEWRR 257 (271)
Q Consensus 230 ~~s~v~~~~~~~~~~~-g~p~~~i~~~~~ 257 (271)
+++.+.+|+|++..+. +...+.+..+.+
T Consensus 428 ~gs~v~~~v~~~~~~~~~~~~~~~~~~~~ 456 (481)
T PRK14358 428 AGSAVHDDVPEGAMAVARGKQRNLEGWSR 456 (481)
T ss_pred CCCEEecccCCCCEEEecccceeccchhh
Confidence 9999999999999875 335555555544
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=9.5e-25 Score=200.56 Aligned_cols=181 Identities=24% Similarity=0.379 Sum_probs=136.5
Q ss_pred EccCc-EECCCcEECCCCEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCccEEcceEECCCcEECCCCEECC
Q 024191 49 FHQSA-CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 122 (271)
Q Consensus 49 i~~~~-~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~-----~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~ 122 (271)
+++++ .+++++.|++++.|++++.|++++.||++|.|++++ .|+++|.|+ .+.+.+++|++++.|++++.|..
T Consensus 252 i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~ 330 (450)
T PRK14360 252 IDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRP 330 (450)
T ss_pred ecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECC
Confidence 44443 355555555555555555555555555555555444 455555553 34456889999999999999974
Q ss_pred CCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceecc--
Q 024191 123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-- 200 (271)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-- 200 (271)
+++||++|.|+.++.+. ++.|++++.+.+++.+ .++.|+++|.||+++.+..
T Consensus 331 --------------------~~~Ig~~~~Ig~~~~i~-----~~~i~~~~~i~~~~~~-~~~~i~~~~~iG~~~~~~~~~ 384 (450)
T PRK14360 331 --------------------EAQIGSNCRIGNFVEIK-----KSQLGEGSKVNHLSYI-GDATLGEQVNIGAGTITANYD 384 (450)
T ss_pred --------------------CCEEeCceEECCCEEEe-----ccccCCCcEeccceec-CCceecCCcEECccceecccc
Confidence 78999999999999885 5788888888887766 4677777777777766643
Q ss_pred -----CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh-hHHH
Q 024191 201 -----SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI-HEWR 256 (271)
Q Consensus 201 -----~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i-~~~~ 256 (271)
+++||++|+||++++|.++++||++++|++++.|.+|+|+++.+.|.|++.+ +.|.
T Consensus 385 ~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~~~~~~ 446 (450)
T PRK14360 385 GVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVIKENWK 446 (450)
T ss_pred ccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceeeccchh
Confidence 7999999999999999999999999999999999999999999999777654 4454
No 26
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=8.6e-25 Score=199.74 Aligned_cols=218 Identities=21% Similarity=0.228 Sum_probs=147.7
Q ss_pred eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191 6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV 85 (271)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I 85 (271)
-++.|....++|.++.++++++.++..+..... ..+...+..+ ...+.+.+.+++.|.+++.|++++.|+++|.|
T Consensus 206 ~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~-~~~~~~g~~~----~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i 280 (430)
T PRK14359 206 TIKAVFVDEENFMGVNSKFELAKAEEIMQERIK-KNAMKQGVIM----RLPETIYIESGVEFEGECELEEGVRILGKSKI 280 (430)
T ss_pred eEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHH-HHHHHcCCEE----ecCCeeEECCCcEEcCceEECCCCEECCCeEE
Confidence 356677734689999999999988754444332 2222222211 11233445555666666677777777777777
Q ss_pred CCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCC
Q 024191 86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165 (271)
Q Consensus 86 ~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~ 165 (271)
+ ++.|+++|.|++ +.+.+++||+++.|++++.|. ++.||+++.|+... + .+
T Consensus 281 ~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~---------------------~~~ig~~~~i~~~~-~-----~~ 331 (430)
T PRK14359 281 E-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIK---------------------NTHIGNFVETKNAK-L-----NG 331 (430)
T ss_pred E-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEe---------------------ccEEcCcEEEcccE-e-----cc
Confidence 6 677777777766 566778888888888888885 77888888777633 2 12
Q ss_pred eEECCCcEECCCcEEccccEECCCCEEcccceecc-CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE
Q 024191 166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY 244 (271)
Q Consensus 166 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~ 244 (271)
+.||..+.++. +.|++++.||+++.+.++....+ ++.||++|+||.++.|.++++||++++|++++.|.+|+|+++++
T Consensus 332 ~~i~~~~~i~d-~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~ 410 (430)
T PRK14359 332 VKAGHLSYLGD-CEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLA 410 (430)
T ss_pred ccccccccccC-CEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEE
Confidence 44444444432 34444444444444433322222 48999999999999999999999999999999999999999987
Q ss_pred Ec-CCCchhhHHHHH
Q 024191 245 GG-FPAVPIHEWRRQ 258 (271)
Q Consensus 245 ~g-~p~~~i~~~~~~ 258 (271)
.| .|+..++.|...
T Consensus 411 ~~~~~~~~~~~~~~~ 425 (430)
T PRK14359 411 ISRAPQKNIKNFYYK 425 (430)
T ss_pred EeccCceehhhHHHH
Confidence 64 999999998543
No 27
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.92 E-value=7e-24 Score=180.53 Aligned_cols=179 Identities=25% Similarity=0.339 Sum_probs=160.7
Q ss_pred CcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCC
Q 024191 46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDG 124 (271)
Q Consensus 46 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~ 124 (271)
...|++.+.+.+.+.+++++.|+++++|++++.||++++|.++++||+++.||+++.| .+++|..++.||.+|.|.+
T Consensus 99 ~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~-- 176 (338)
T COG1044 99 AAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHS-- 176 (338)
T ss_pred ccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECC--
Confidence 3579999999999999999999999999999999999999999999999999999999 8999999999999999985
Q ss_pred ceeEEccCCceecCCceeceEECCCcEECCccEEeCC---CcCCeEECCCcEECCCcEEccc----cEECCCCEEcccce
Q 024191 125 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG---SWRDTVIGDHSKIDNLVQIGHN----VAIGKSCMLCGQVG 197 (271)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~---~~~~~~ig~~~~i~~~~~i~~~----~~ig~~~~i~~~~~ 197 (271)
.++||.+.+....+.+.-. -...+.|++++.|+.+++|.+. +.|++++.|++.+.
T Consensus 177 ------------------GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vq 238 (338)
T COG1044 177 ------------------GAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQ 238 (338)
T ss_pred ------------------CCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeE
Confidence 8899999888887655511 0156899999999999999987 99999999999999
Q ss_pred eccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccC--CCCCeE
Q 024191 198 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI--TEPGDY 244 (271)
Q Consensus 198 i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~--~~~~~~ 244 (271)
|.++|+||++|.|.+++-|...+.||++++|++.+-+...+ -+++..
T Consensus 239 IaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I 287 (338)
T COG1044 239 IGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTI 287 (338)
T ss_pred EccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEE
Confidence 99999999999999999999999999999999999988654 466654
No 28
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.91 E-value=6.8e-24 Score=171.27 Aligned_cols=206 Identities=25% Similarity=0.286 Sum_probs=158.4
Q ss_pred cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-------------ceEEC
Q 024191 43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIG 109 (271)
Q Consensus 43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~~~Ig 109 (271)
+++++.|.|+|.|+++++||+.|.|++++.|++++.|+++++|...+.||.++.|-+++.|. ...||
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG 85 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIG 85 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEEC
Confidence 34445555555555555555555555555555555555555555555555555555555551 46889
Q ss_pred CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCC
Q 024191 110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKS 189 (271)
Q Consensus 110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~ 189 (271)
++|.|.+++++..+. ... .+.+.||+++.+-+++++. +||+||+++++.++++++.++.|||+
T Consensus 86 ~~n~IRE~vTi~~GT----------~~g---~g~T~IGdnnl~May~HVA----HDC~iGn~~ilaNnatLAGHV~igD~ 148 (260)
T COG1043 86 DNNTIREFVTIHRGT----------VQG---GGVTRIGDNNLIMAYAHVA----HDCVIGNNCILANNATLAGHVEVGDY 148 (260)
T ss_pred CCCeEeeEEEEeccc----------cCC---ceeEEECCCCEEEEeeeee----ccceecCcEEEecCCeEeccEEECCE
Confidence 999999999986432 111 1479999999999999998 89999999999999999999999999
Q ss_pred CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe-EEcCCCchhhHHHHHHHHhhcccc
Q 024191 190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIRSSK 267 (271)
Q Consensus 190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~-~~g~p~~~i~~~~~~~~~~~r~~~ 267 (271)
+.|++.+.+...++||+++.||+.+-|.+++ ++++++.++....+.+.--.+ .+|+++..+..++++++.++|...
T Consensus 149 aiiGG~saVHQFvrIG~~amiGg~S~v~~DV--pPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~~ 225 (260)
T COG1043 149 AIIGGLSAVHQFVRIGAHAMIGGLSAVSQDV--PPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSGL 225 (260)
T ss_pred EEEcCcceEEEEEEEcchheeccccccccCC--CCeEEecCCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCCC
Confidence 9999999999999999999999999999876 569999888777666665554 579999999999999999988653
No 29
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.90 E-value=9.4e-23 Score=180.60 Aligned_cols=167 Identities=33% Similarity=0.432 Sum_probs=124.0
Q ss_pred cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-c---------------
Q 024191 41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-S--------------- 104 (271)
Q Consensus 41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~--------------- 104 (271)
.++..+..|++++.|++++.|+++++|.++++|++++.||++|.|.+++.|.+++.|+++|.| .
T Consensus 113 ~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~ 192 (343)
T PRK00892 113 AKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDR 192 (343)
T ss_pred CEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCC
Confidence 344445556666666666666666666666666666666666666665555444444444444 2
Q ss_pred ----------ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEE
Q 024191 105 ----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174 (271)
Q Consensus 105 ----------~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i 174 (271)
+++|++++.|++++.|.... ...++||+++.|+.+++|. +++.||+++.+
T Consensus 193 ~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~----------------~~~t~Ig~~~~i~~~v~I~----~~~~IG~~~~i 252 (343)
T PRK00892 193 GGWVKIPQLGRVIIGDDVEIGANTTIDRGA----------------LDDTVIGEGVKIDNLVQIA----HNVVIGRHTAI 252 (343)
T ss_pred CceeeccccccEEECCCcEECCCcEEecCc----------------cccceeCCCCEEeCCeEEc----cCCEECCCcEE
Confidence 35566666666666664321 2379999999999999997 67999999999
Q ss_pred CCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE
Q 024191 175 DNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 228 (271)
Q Consensus 175 ~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i 228 (271)
.+++.+..++.||++++|+.++.+.++++||++++|++++.|.+++..+ +++.
T Consensus 253 ~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~~-~~~~ 305 (343)
T PRK00892 253 AAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEP-GEYS 305 (343)
T ss_pred eeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccCCC-CeEE
Confidence 9999999999999999999999999999999999999999999986653 4443
No 30
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.90 E-value=4.4e-23 Score=172.10 Aligned_cols=179 Identities=21% Similarity=0.265 Sum_probs=112.6
Q ss_pred EeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCc-EECCCcEECCCCEECcCcEECCCcEECCCCEECC
Q 024191 9 YYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSA-CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP 87 (271)
Q Consensus 9 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~ 87 (271)
.+.+ .+||.|+ ++||+++..++....... .......+.. +++.++.|++++.|.++++||+++.|++++.|.+
T Consensus 42 ~~~~-~gyW~Di---~~yl~an~diL~~~~~~~--~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~ 115 (231)
T TIGR03532 42 SGVL-FGEWEDI---EPFIEANKDKIKDYRIEN--DRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINI 115 (231)
T ss_pred cEEE-EEeHHHH---HHHHHHhHhhhcceEEee--cccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCC
Confidence 4555 8899999 999999988876542100 0000011111 2344455555555555555555555555555555
Q ss_pred CcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCe
Q 024191 88 AVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166 (271)
Q Consensus 88 ~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~ 166 (271)
++.||++|.|+.++.| .++.||++|.|++++.|. ..
T Consensus 116 ~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~--------------------------------------~~----- 152 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLA--------------------------------------GV----- 152 (231)
T ss_pred CeEECCCCEEccccccCCCcEECCCcEEcCCcEEc--------------------------------------cc-----
Confidence 5555555554444444 233344444443333332 00
Q ss_pred EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEc
Q 024191 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG 246 (271)
Q Consensus 167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g 246 (271)
++... ..+++||++|+||++++|.+++.|+++++|+++++|.+|+|+++++.|
T Consensus 153 -------------------~~~~~--------~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G 205 (231)
T TIGR03532 153 -------------------IEPPS--------AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAG 205 (231)
T ss_pred -------------------ccccc--------CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEe
Confidence 00000 245889999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhh
Q 024191 247 FPAVPIHEWRRQVANQI 263 (271)
Q Consensus 247 ~p~~~i~~~~~~~~~~~ 263 (271)
+||+.++.+++......
T Consensus 206 ~PA~~i~~~~~~~~~~~ 222 (231)
T TIGR03532 206 VPAKVIKQVDEKTKDKT 222 (231)
T ss_pred cCCEEeccCChhHhHHH
Confidence 99999998865444433
No 31
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.90 E-value=4.4e-22 Score=174.23 Aligned_cols=80 Identities=30% Similarity=0.466 Sum_probs=53.1
Q ss_pred ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
+++||+++.|+..++|. +++.||+++.+.+++.+..++.||++|++++++.+.+++.||++++|++++.|.+++
T Consensus 217 ~t~Ig~~~~I~n~v~I~----~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v-- 290 (324)
T TIGR01853 217 DTIIGEGTKIDNLVQIA----HNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSI-- 290 (324)
T ss_pred cceecCCcEEccCcEEC----CCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEeCCcC--
Confidence 56666666666666665 456677777777777776677777777777777777777777777777777776653
Q ss_pred CCCcEE
Q 024191 223 ASKVRL 228 (271)
Q Consensus 223 g~~~~i 228 (271)
++++++
T Consensus 291 ~~~~~~ 296 (324)
T TIGR01853 291 PPPGVY 296 (324)
T ss_pred CCCcEE
Confidence 444444
No 32
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.88 E-value=1.9e-20 Score=154.56 Aligned_cols=166 Identities=31% Similarity=0.429 Sum_probs=123.2
Q ss_pred CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cc-----------------
Q 024191 44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SN----------------- 105 (271)
Q Consensus 44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~----------------- 105 (271)
.++..|++.++++++++|+++++|++++.|++++.||++|.|.+++.|++++.|++++.| .+
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~ 84 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGW 84 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcE
Confidence 445566666777666777777777666666666666666666666666555555555555 22
Q ss_pred --------eEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCC
Q 024191 106 --------CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 177 (271)
Q Consensus 106 --------~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~ 177 (271)
+.|++++.|++++.+... ....+.||+++.++.++.+. +++.+++++.+..+
T Consensus 85 ~~~~~~~~v~Ig~~~~Ig~~~~i~~~----------------~~~~~~Ig~~~~i~~~v~I~----~~~~ig~~~~i~~~ 144 (205)
T cd03352 85 VKIPQLGGVIIGDDVEIGANTTIDRG----------------ALGDTVIGDGTKIDNLVQIA----HNVRIGENCLIAAQ 144 (205)
T ss_pred EEcCCcceEEECCCEEECCCCEEecc----------------ccCCeEECCCCEECCceEEe----CCCEECCCCEECCC
Confidence 344555555555554321 11368999999999999997 56999999999999
Q ss_pred cEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191 178 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 231 (271)
Q Consensus 178 ~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~ 231 (271)
+.+.+++.|+++++|+.++.+.++++||++++|++++++.++ ++++.++.+.
T Consensus 145 ~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~G~ 196 (205)
T cd03352 145 VGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVSGT 196 (205)
T ss_pred CEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeE--CCCCCEEEee
Confidence 999999999999999999999999999999999999999964 5566666543
No 33
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.85 E-value=1.5e-19 Score=147.77 Aligned_cols=161 Identities=19% Similarity=0.294 Sum_probs=118.5
Q ss_pred cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCccEE-cceEECCCcEE
Q 024191 41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVAL-SNCIIGDSCII 114 (271)
Q Consensus 41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~-----~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I 114 (271)
.++..+..|++.+.|.+++.|+++|.|++++.|... .|+++|.|.++ +.|++++.|++++.| .++.|++++.|
T Consensus 16 v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~I 94 (193)
T cd03353 16 VEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHI 94 (193)
T ss_pred eEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEE
Confidence 445556667777777777777777777776666543 55666666553 456666666666666 35666667777
Q ss_pred CCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEEC
Q 024191 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIG 187 (271)
Q Consensus 115 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig 187 (271)
++++.+. +++|++++.++..+.+ .++.||+++.+++++.+. ..+.||
T Consensus 95 g~~~~i~---------------------~s~ig~~~~i~~~~~i-----~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vig 148 (193)
T cd03353 95 GNFVEIK---------------------KSTIGEGSKANHLSYL-----GDAEIGEGVNIGAGTITCNYDGVNKHRTVIG 148 (193)
T ss_pred CCcEEEe---------------------cceEcCCCEeccccee-----cccEECCCCEEcCceEEeccCCccccCCEEC
Confidence 6666664 7888888888877766 357888888888877663 468999
Q ss_pred CCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 188 KSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 188 ~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
++++++.++.+.++++||+++.|+++++|.++ +++++++..
T Consensus 149 d~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~--v~~~~~v~~ 189 (193)
T cd03353 149 DNVFIGSNSQLVAPVTIGDGATIAAGSTITKD--VPPGALAIA 189 (193)
T ss_pred CCeEEccCCEEeCCcEECCCcEECCCCEEccc--cCCCCEEEe
Confidence 99999999999999999999999999999985 466776654
No 34
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.84 E-value=1.6e-19 Score=143.61 Aligned_cols=154 Identities=22% Similarity=0.335 Sum_probs=115.2
Q ss_pred CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCC
Q 024191 44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123 (271)
Q Consensus 44 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~ 123 (271)
.+++.+.+.+++++++.|++++.|.++++|++++.|++++.|.+++.|+++|.|++++.|.+++|++++.|++++.+.
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~-- 86 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG-- 86 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe--
Confidence 445667778888888888888888888889999999999999888889999999999999889999999999888886
Q ss_pred CceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcE
Q 024191 124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT 203 (271)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~ 203 (271)
.++|++++.|++++.+......+..+ .+.. .++....+ .. ..++.
T Consensus 87 -------------------~siIg~~~~I~~~~~i~~~~~~~~~~----~~~~---~~~~~~~~--------~~-~~~~i 131 (163)
T cd05636 87 -------------------DSVLGENVNLGAGTITANLRFDDKPV----KVRL---KGERVDTG--------RR-KLGAI 131 (163)
T ss_pred -------------------cCEECCCCEECCCcEEcccCcCCcce----EEEe---cCcceecC--------Cc-ccCcE
Confidence 78888888888888775321111000 0000 00111111 10 12488
Q ss_pred ECCCcEEccccEECCCCEECCCcEEcCCcEE
Q 024191 204 IGDYVTLGGRVAVRDHVSIASKVRLAANSCV 234 (271)
Q Consensus 204 Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v 234 (271)
|+++++||.++.|.+++.|+++++|+++++|
T Consensus 132 Ig~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 132 IGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred EcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 9999999999999999999999999999887
No 35
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.83 E-value=2.3e-19 Score=164.73 Aligned_cols=152 Identities=19% Similarity=0.316 Sum_probs=109.5
Q ss_pred cccCCCcEEccCcEECCCcEECCCCEECc-----CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEEC
Q 024191 41 KWHNGGGIFHQSACIDSTVLIEVGAIVHS-----KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIH 115 (271)
Q Consensus 41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~-----~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~ 115 (271)
.++.++..|++++.|++++.|+++|.|++ +++||+++.|++++.|.+++.||++|.|++++.+.++.|++++.++
T Consensus 269 ~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 269 TVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEEC
Confidence 34444555666666666666666666665 3566666777777777666777777777777777778888888888
Q ss_pred CCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEccc
Q 024191 116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQ 195 (271)
Q Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~ 195 (271)
+.+.++ ++.||+++.|+.++++... . + ...+++.||++++++.+
T Consensus 349 ~~~~i~---------------------~~~ig~~~~Ig~~~~~~~~----------~----~-~~~~~~~Ig~~~~ig~~ 392 (446)
T PRK14353 349 HLTYIG---------------------DATIGAGANIGAGTITCNY----------D----G-FNKHRTEIGAGAFIGSN 392 (446)
T ss_pred CeeEEc---------------------CcEEcCCcEECCceeeecc----------c----c-ccCCCcEECCCcEECCC
Confidence 777775 7888888888888765321 0 0 12356889999999999
Q ss_pred ceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 196 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 196 ~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
+.+.++++||++++||++++|.+++. +++++.+
T Consensus 393 ~~i~~~~~Ig~~~~ig~~s~v~~~v~--~~~~~~g 425 (446)
T PRK14353 393 SALVAPVTIGDGAYIASGSVITEDVP--DDALALG 425 (446)
T ss_pred CEEeCCCEECCCCEECCCCEECccCC--CCCEEEe
Confidence 99999999999999999999998655 4544433
No 36
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.83 E-value=5.9e-20 Score=143.50 Aligned_cols=62 Identities=26% Similarity=0.260 Sum_probs=52.7
Q ss_pred eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEec--cCCCCCeEEcCCCchhhHHHHHH
Q 024191 197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRRQV 259 (271)
Q Consensus 197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~g~p~~~i~~~~~~~ 259 (271)
.+.+ |+||++|+||.+++|+.+.+||++|+|+++++|+. .+|+++++.|.|++.++++....
T Consensus 86 ivHG-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~ 149 (176)
T COG0663 86 VVHG-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEE 149 (176)
T ss_pred EEEE-eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChhH
Confidence 3344 88999999999999999999999999999999884 78999999999999999775443
No 37
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.82 E-value=4.2e-19 Score=144.48 Aligned_cols=64 Identities=20% Similarity=0.151 Sum_probs=55.3
Q ss_pred CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccC--CCCCeEEcCCCchhhHHHHHHHHhhc
Q 024191 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI--TEPGDYGGFPAVPIHEWRRQVANQIR 264 (271)
Q Consensus 201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~--~~~~~~~g~p~~~i~~~~~~~~~~~r 264 (271)
+++||++|+||.+++|.+++.||+++.|+++|+|.+++ |++++|.|+||+.++.+.+....+.+
T Consensus 88 g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~~~~~~ 153 (196)
T PRK13627 88 GCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELHWKR 153 (196)
T ss_pred eEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHHHHHHH
Confidence 47899999999999999999999999999999999976 88999999999999987554444433
No 38
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.81 E-value=7.6e-19 Score=161.49 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=87.2
Q ss_pred CcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECC-----CcEECCCCEECCccEE-cceEECCCcEECCCCE
Q 024191 46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP-----AVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC 119 (271)
Q Consensus 46 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~-----~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~ 119 (271)
+..|++++.|.+++.|++++.|++++.|. ++.|+++|.|++ ++.|+++|.|++++.| .+++|+++|.|++++.
T Consensus 267 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~ 345 (451)
T TIGR01173 267 DVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVE 345 (451)
T ss_pred CCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEcccee
Confidence 33444444444444444444444443332 233333333332 2345555555555555 2455556666666555
Q ss_pred ECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcc-------ccEECCCCEE
Q 024191 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH-------NVAIGKSCML 192 (271)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~-------~~~ig~~~~i 192 (271)
+. ++.||+++.++..+.+. ++.||+++.++.++.+.. .+.||++++|
T Consensus 346 i~---------------------~~~ig~~~~i~~~~~i~-----~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 399 (451)
T TIGR01173 346 TK---------------------NARIGKGSKAGHLSYLG-----DAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFI 399 (451)
T ss_pred ec---------------------CcEECCCcEecceeeEe-----eeEEcCCcEECCCeEEeCcccccCCCCEECCCcEE
Confidence 54 56666666666666553 466666666666665532 4677777777
Q ss_pred cccceeccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191 193 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 229 (271)
Q Consensus 193 ~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~ 229 (271)
+.++.+.++++||++++|+++++|.++ |++++++.
T Consensus 400 g~~~~i~~~~~ig~~~~i~~g~~v~~~--v~~~~~~~ 434 (451)
T TIGR01173 400 GSNTQLVAPVKVGDGATIAAGSTVTKD--VPEGALAI 434 (451)
T ss_pred CCCCEEECCcEECCCCEEccCCEECcc--CCCCcEEE
Confidence 777777777777777777777777664 45555553
No 39
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.81 E-value=8.9e-19 Score=143.74 Aligned_cols=157 Identities=20% Similarity=0.166 Sum_probs=97.2
Q ss_pred CCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCce
Q 024191 56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM 135 (271)
Q Consensus 56 ~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~ 135 (271)
++++.|++++.|. ++.||+++.|+++|+|. +++||+++.|+.++.+.++.||++|.|++++.+.....
T Consensus 6 ~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h---------- 73 (204)
T TIGR03308 6 SPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNH---------- 73 (204)
T ss_pred CCCCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCC----------
Confidence 4455555555553 35666666666666665 55666667776666666666666666666666642100
Q ss_pred ecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccE
Q 024191 136 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA 215 (271)
Q Consensus 136 ~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~ 215 (271)
.-++....+.+ .... ...... ..+... .......++.||++++||.+++
T Consensus 74 ----------~~~~~s~~~~~----------~~~~--------~~~~~~--~~~~~~-~~~~~~~~~~Ig~~~~Ig~~~~ 122 (204)
T TIGR03308 74 ----------PMERPTLHHFT----------YRAA--------MYFDDA--SDDADF-FAWRRAKRVTIGHDVWIGHGAV 122 (204)
T ss_pred ----------CCCcccccccc----------cccc--------cccccc--cccccc-cccccCCCeEECCCCEECCCCE
Confidence 00000000000 0000 000000 000000 0011346799999999999999
Q ss_pred ECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191 216 VRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 216 i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~ 255 (271)
|.+++.||++++|+++++|.+|+|+++++.|+||+.++.+
T Consensus 123 I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~ 162 (204)
T TIGR03308 123 ILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRR 162 (204)
T ss_pred ECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhc
Confidence 9999999999999999999999999999999999998753
No 40
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.81 E-value=1.5e-18 Score=134.40 Aligned_cols=65 Identities=11% Similarity=0.161 Sum_probs=57.6
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCC-CeEEcCCC
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEP-GDYGGFPA 249 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~-~~~~g~p~ 249 (271)
+++.|+++++++.++.+.++++||+++.|+++++|.++++|+++ +++++|.||+|++ ..++|+|.
T Consensus 74 ~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~~~~~~~~~~g~~~ 139 (139)
T cd03350 74 TPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGRVPPGSVVVAGSLP 139 (139)
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecccCCCCEEecccCC
Confidence 56777777777777888888999999999999999999999998 9999999999999 57889984
No 41
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.81 E-value=8e-19 Score=138.41 Aligned_cols=62 Identities=24% Similarity=0.194 Sum_probs=49.4
Q ss_pred CcEECCCcEEccccEECCCCEECCCcEEcCCcEEec--cCCCCCeEEcCCCchhhHHHHHHHHh
Q 024191 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRRQVANQ 262 (271)
Q Consensus 201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~g~p~~~i~~~~~~~~~~ 262 (271)
++.||++|+|+.+++|.+++.|+++++|++++++.+ ++|+++.+.|+|++.++.+.+....+
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~~~~~ 141 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEVAW 141 (155)
T ss_pred CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHHHHHH
Confidence 367777777888888888888888888888888877 67999999999999999876554443
No 42
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.80 E-value=2.4e-18 Score=159.16 Aligned_cols=171 Identities=16% Similarity=0.250 Sum_probs=123.8
Q ss_pred cCCCcEEccCcEECCCcEECCCCEECcCcE-----ECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECC
Q 024191 43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAV-----LGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHN 116 (271)
Q Consensus 43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~-----Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~ 116 (271)
+.++..|++++.|.+++.|+++|.|+++|+ |++++.|+++++|. ++.|++++.|+.++.+ .++.|++++.|++
T Consensus 273 Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~-~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~ 351 (481)
T PRK14358 273 LGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLE-GAEVGAGSDVGPFARLRPGTVLGEGVHIGN 351 (481)
T ss_pred ECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceec-CCeEeCceEECCccEEcCCcEECCCCEECC
Confidence 344455555555555555555555555544 45555555555553 3566777777777777 4688888888888
Q ss_pred CCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCC
Q 024191 117 GVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKS 189 (271)
Q Consensus 117 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~ 189 (271)
++.|. +++|++++.+++.+.+ .++.||+++.+++++.+. +++.||++
T Consensus 352 ~~~i~---------------------~~~i~~~~~ig~~~~~-----~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~ 405 (481)
T PRK14358 352 FVETK---------------------NARLDAGVKAGHLAYL-----GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAG 405 (481)
T ss_pred CEEEC---------------------CceecCCcccCceEEE-----CCeEEcCCceEcCCEEEeCCCCccCCCCEECCC
Confidence 88875 8888999988888777 468888888888888774 46899999
Q ss_pred CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe
Q 024191 190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 243 (271)
Q Consensus 190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~ 243 (271)
++++.++.+.++++||++++|+++++|.+++..+..+.+ . .+.+++.....
T Consensus 406 ~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~~--~-~~~~~~~~~~~ 456 (481)
T PRK14358 406 VFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAVA--R-GKQRNLEGWSR 456 (481)
T ss_pred eEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEEe--c-ccceeccchhh
Confidence 999999999999999999999999999997655444443 3 26667765554
No 43
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.80 E-value=3.1e-18 Score=158.62 Aligned_cols=164 Identities=21% Similarity=0.273 Sum_probs=112.9
Q ss_pred CCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEEC----CCcEECCCCEECCccEE-cceEECCCcEECCCCE
Q 024191 45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG----PAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC 119 (271)
Q Consensus 45 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~----~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~ 119 (271)
++..|++++.|.+++.|+++|.|++++.|. ++.|+++|.|. .++.|++++.|++++.+ .+++|++++.++.++.
T Consensus 276 ~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~ 354 (482)
T PRK14352 276 RDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVE 354 (482)
T ss_pred CCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEE
Confidence 334444444444445555555555555552 35555565553 24556666777777666 4667777777776666
Q ss_pred ECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCCCEE
Q 024191 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCML 192 (271)
Q Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~~~i 192 (271)
+. +++|++++.++..+.+ .++.||+++.|+.++.+. +++.||+++++
T Consensus 355 ~~---------------------~~~I~~~~~i~~~~~i-----~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~i 408 (482)
T PRK14352 355 TK---------------------NATIGRGTKVPHLTYV-----GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRT 408 (482)
T ss_pred Ec---------------------ccEECCCcEEccCcee-----cccEECCCcEECCCcEEeccccccCCCCeECCCcEE
Confidence 54 7788888888877666 357888888888887664 45999999999
Q ss_pred cccceeccCcEECCCcEEccccEECCCCEECCCcE--EcCCcEEecc
Q 024191 193 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR--LAANSCVFKD 237 (271)
Q Consensus 193 ~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~--i~~~s~v~~~ 237 (271)
+.++.+.++++||++++|+++++|.+++. ++++ .+.++...++
T Consensus 409 G~~~~i~~~~~Ig~~~~igags~v~~~v~--~~~~~~~~~p~~~~~~ 453 (482)
T PRK14352 409 GSDTMFVAPVTVGDGAYTGAGTVIREDVP--PGALAVSEGPQRNIEG 453 (482)
T ss_pred CCCCEEeCCCEECCCcEECCCCEEcCCCC--CCcEEEeccccccccc
Confidence 99999999999999999999999999864 4543 3444444443
No 44
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.79 E-value=4.4e-18 Score=142.62 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=52.9
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE-c-CCCc
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-G-FPAV 250 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~-g-~p~~ 250 (271)
+++.|+++|+|+.++.+.++++||++++||++++|.++++|.+.. +++++.+++|+++.+. | .|++
T Consensus 172 ~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~~vp~~svv~~g~~p~~ 239 (269)
T TIGR00965 172 NPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYGRVPAGSVVVSGNLPSK 239 (269)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc---CCceeeeecCCCcEEecCCeecC
Confidence 567777777777777778888889999999999999999998876 7788888899999875 4 6643
No 45
>PLN02296 carbonate dehydratase
Probab=99.79 E-value=2.7e-18 Score=145.78 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=44.7
Q ss_pred CcEECCCcEEccccEECCCCEECCCcEEcCCcEEecc--CCCCCeEEcCCCchhhHH
Q 024191 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~g~p~~~i~~~ 255 (271)
+++||++|+||.+++|.+++.|+++++|+++++|.++ +|++++|.|+||+.++.+
T Consensus 136 g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~ 192 (269)
T PLN02296 136 GCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKL 192 (269)
T ss_pred CCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCC
Confidence 3677788888888888888888888888888888877 788888888888887755
No 46
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=1.4e-18 Score=151.61 Aligned_cols=158 Identities=19% Similarity=0.302 Sum_probs=120.8
Q ss_pred CCcEEccCcEECCCcEECCCCEECcC-----cEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCC
Q 024191 45 GGGIFHQSACIDSTVLIEVGAIVHSK-----AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGV 118 (271)
Q Consensus 45 ~~~~i~~~~~i~~~~~I~~~~~I~~~-----~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~ 118 (271)
....|++++.+..++.|+.+|+|+++ +.|++++.|-++++|+ ++.|+++|.||+++++ .++.|+++++||+.+
T Consensus 273 ~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie-~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFV 351 (460)
T COG1207 273 RDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIE-GSTVGEGATVGPFARLRPGAVLGADVHIGNFV 351 (460)
T ss_pred CceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceee-ccEecCCcccCCccccCCcCcccCCCeEeeeE
Confidence 34445555555556666666666666 4455555555555554 5678888888888888 789999999999999
Q ss_pred EECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE-------ccccEECCCCE
Q 024191 119 CIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNVAIGKSCM 191 (271)
Q Consensus 119 ~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i-------~~~~~ig~~~~ 191 (271)
.+. ++.||++++.++-+.++ |+.||+++.|+.++.. .+.+.||+++.
T Consensus 352 EvK---------------------~a~ig~gsKa~HLtYlG-----DA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vF 405 (460)
T COG1207 352 EVK---------------------KATIGKGSKAGHLTYLG-----DAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVF 405 (460)
T ss_pred EEe---------------------cccccCCccccceeeec-----cceecCCceeccceEEEcCCCcccceeeecCCcE
Confidence 987 88888888888888884 6788888888877664 45799999999
Q ss_pred EcccceeccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191 192 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 229 (271)
Q Consensus 192 i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~ 229 (271)
+|+++.+-.+++|||+++|+++++|.+++.-+.-++-.
T Consensus 406 iGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~R 443 (460)
T COG1207 406 IGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISR 443 (460)
T ss_pred EccCCcEEeeEEecCCcEEcccceEcccCCCCceeEee
Confidence 99999999999999999999999999987765444433
No 47
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.78 E-value=6.4e-18 Score=155.61 Aligned_cols=160 Identities=21% Similarity=0.300 Sum_probs=114.3
Q ss_pred cCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCccEE-cceEECCCcEECC
Q 024191 43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVAL-SNCIIGDSCIIHN 116 (271)
Q Consensus 43 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~-----~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~ 116 (271)
...+..|++++.|.+++.|++++.|++++.|. ++.|+++|.|+++ +.|++++.|++++.| .++.|++++.|++
T Consensus 268 ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~ 346 (456)
T PRK09451 268 HGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGN 346 (456)
T ss_pred ECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecc
Confidence 34455566666666666666666666655553 4555555555444 445566666666666 4677777777777
Q ss_pred CCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCC
Q 024191 117 GVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKS 189 (271)
Q Consensus 117 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~ 189 (271)
++.|. .+.|++++.++..+.+ .++.||+++.|++++.+. ..+.||++
T Consensus 347 ~~~i~---------------------~~~i~~~~~~~~~~~~-----g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~ 400 (456)
T PRK09451 347 FVEMK---------------------KARLGKGSKAGHLTYL-----GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDD 400 (456)
T ss_pred ceeee---------------------ceeeCCCCccCccccc-----cccEECCCCEEcCCeEEecccCcccCCCEECCC
Confidence 77765 7888888888877665 467888888888887663 25889999
Q ss_pred CEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191 190 CMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 231 (271)
Q Consensus 190 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~ 231 (271)
|+++.++.+.++++||++++|+++++|.+++ ++++.+-++
T Consensus 401 ~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v--~~~~~~~~~ 440 (456)
T PRK09451 401 VFVGSDTQLVAPVTVGKGATIGAGTTVTRDV--AENELVISR 440 (456)
T ss_pred cEECCCCEEeCCcEECCCCEECCCCEEcccc--CCCCEEEec
Confidence 9999999999999999999999999999864 566666433
No 48
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.78 E-value=1.1e-17 Score=132.95 Aligned_cols=84 Identities=12% Similarity=0.189 Sum_probs=63.7
Q ss_pred eEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE
Q 024191 166 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG 245 (271)
Q Consensus 166 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~ 245 (271)
+.||+++.+..++.+.+ +.||++|+|+.++.+.++++||++|+||++++|.+++.+++++++++++.+.++..
T Consensus 67 v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~~------ 139 (164)
T cd04646 67 MIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQT------ 139 (164)
T ss_pred eEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEecC------
Confidence 44455555555555533 88888888888888899999999999999999999999999999999988887544
Q ss_pred cCCCchhhHHH
Q 024191 246 GFPAVPIHEWR 256 (271)
Q Consensus 246 g~p~~~i~~~~ 256 (271)
-.|+..+++|+
T Consensus 140 ~~~~~~~~~~~ 150 (164)
T cd04646 140 DRPKPQTLQLD 150 (164)
T ss_pred CCchhHHHHHH
Confidence 13455555543
No 49
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.77 E-value=8.8e-18 Score=154.38 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=105.6
Q ss_pred cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCC----------------EECCccEE-cceEEC
Q 024191 47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST----------------NIGFNVAL-SNCIIG 109 (271)
Q Consensus 47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~----------------~Ig~~~~I-~~~~Ig 109 (271)
..|++++.|++++.|++++.|++++.||+++.|+++|.|. ++.|+++| .|++++.| .++.|+
T Consensus 250 ~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig 328 (448)
T PRK14357 250 TYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLK 328 (448)
T ss_pred EEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCccccc
Confidence 3566666666666666666666666666666666665554 23444444 44444444 335555
Q ss_pred CCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------c
Q 024191 110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------H 182 (271)
Q Consensus 110 ~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~ 182 (271)
+++.|++++.+. .+.||+++.+.+.+.+ .++.||+++.++.++.+. +
T Consensus 329 ~~~~Ig~~~~i~---------------------~~~ig~~~~~~~~~~~-----~~~~Ig~~~~ig~~~~~~~~~~~~~~ 382 (448)
T PRK14357 329 KSVKIGNFVEIK---------------------KSTIGENTKAQHLTYL-----GDATVGKNVNIGAGTITCNYDGKKKN 382 (448)
T ss_pred CCcEecCceeee---------------------ccEEcCCcCccccccc-----cCcEECCCcEECCCcccccccccccC
Confidence 555555555543 5667777766666555 357888888888877653 5
Q ss_pred ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191 183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 231 (271)
Q Consensus 183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~ 231 (271)
.+.||++++|+.++.+.++++||++++|+++++|.++ +++++++.+.
T Consensus 383 ~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~--v~~~~~~~g~ 429 (448)
T PRK14357 383 PTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITED--VPPYSLALGR 429 (448)
T ss_pred CcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCc--CCCCcEEEcc
Confidence 6999999999999999999999999999999999986 4556665543
No 50
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.77 E-value=1.1e-17 Score=152.96 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=104.3
Q ss_pred cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEE-cceEECCCcEECCCCEECCCCc
Q 024191 47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGF 125 (271)
Q Consensus 47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~ 125 (271)
..+.+++.|.+.+.|++++.|++++.|+ ++.|+++|.|++ +.+ .++.|++++.| .++.| +++.|++++.|+
T Consensus 254 ~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~~i-~~~~ig~~~~i~~~~~i-~~~~ig~~~~i~---- 325 (430)
T PRK14359 254 IYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-SII-ENSDVGPLAHIRPKSEI-KNTHIGNFVETK---- 325 (430)
T ss_pred eEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEec-cEE-eCCEECCCCEECCCcEE-eccEEcCcEEEc----
Confidence 3456666777777777777777777776 677777777765 233 34555555555 34445 355556666554
Q ss_pred eeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCCCEEccccee
Q 024191 126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCGQVGI 198 (271)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~~~i~~~~~i 198 (271)
++++ +++.|++.+.+ .++.||+++.++.++.+. ..+.||++++++.++.+
T Consensus 326 -----------------~~~~-~~~~i~~~~~i-----~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i 382 (430)
T PRK14359 326 -----------------NAKL-NGVKAGHLSYL-----GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQL 382 (430)
T ss_pred -----------------ccEe-ccccccccccc-----cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEE
Confidence 4445 56666666666 356777777777776664 35899999999999999
Q ss_pred ccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191 199 AGSATIGDYVTLGGRVAVRDHVSIASKVRLA 229 (271)
Q Consensus 199 ~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~ 229 (271)
.++++||++++|+++++|.+++ ++++.+.
T Consensus 383 ~~~~~ig~~~~i~~g~~v~~~v--~~~~~~~ 411 (430)
T PRK14359 383 VAPVNIEDNVLIAAGSTVTKDV--PKGSLAI 411 (430)
T ss_pred eCCcEECCCCEECCCCEEcccc--CCCcEEE
Confidence 9999999999999999999975 4455553
No 51
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.77 E-value=1.7e-17 Score=152.62 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=105.6
Q ss_pred EECCCcEECCCCEECcCcEECCCcEECCCCEECC----CcEECCCCEECCccEEc-ceEECCCcEECCCCEECCCCceeE
Q 024191 54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFF 128 (271)
Q Consensus 54 ~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~----~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~ 128 (271)
.|.+++.|++++.|++++.|. ++.|+++|.|+. ++.|++++.|++++.|. ++.|+++|.|++++.+.
T Consensus 276 ~i~~~~~ig~~~~I~~~~~I~-~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~------- 347 (450)
T PRK14360 276 HLRGNTVIGSGCRIGPGSLIE-NSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK------- 347 (450)
T ss_pred EEeCCcEECCCCEECCCcEEE-EEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe-------
Confidence 333333333333333333332 233444444421 35577788888888884 68888888888888885
Q ss_pred EccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEc-------cccEECCCCEEcccceeccC
Q 024191 129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCGQVGIAGS 201 (271)
Q Consensus 129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~-------~~~~ig~~~~i~~~~~i~~~ 201 (271)
.++|++++.|.+++.+ .++.||+++.|++++.+. ..+.||++++++.++.+.++
T Consensus 348 --------------~~~i~~~~~i~~~~~~-----~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~ 408 (450)
T PRK14360 348 --------------KSQLGEGSKVNHLSYI-----GDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP 408 (450)
T ss_pred --------------ccccCCCcEeccceec-----CCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC
Confidence 7888888888887765 357888888888877763 37999999999999999999
Q ss_pred cEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 202 ATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
++||+++.|+++++|.++ +++++++.+
T Consensus 409 ~~ig~~~~v~~~~~v~~~--~~~~~~~~g 435 (450)
T PRK14360 409 ITLGEDVTVAAGSTITKD--VPDNSLAIA 435 (450)
T ss_pred cEECCCCEECCCCEECcc--CCCCCEEEe
Confidence 999999999999999984 555655544
No 52
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.77 E-value=7.5e-18 Score=136.70 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=34.3
Q ss_pred cEECCCcEEccccEECCCCEECCCcEEcCCcEEec--cCCCCCeEEcCCCchhhHH
Q 024191 202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~g~p~~~i~~~ 255 (271)
++|+++|+||.++.+.+++.|++++.|++++.|.+ ++|+++++.|+|++.++.+
T Consensus 87 siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~ 142 (192)
T TIGR02287 87 CIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIREL 142 (192)
T ss_pred CEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccC
Confidence 45555555555555555566666666666666554 4577777788888877753
No 53
>PLN02472 uncharacterized protein
Probab=99.76 E-value=1.1e-17 Score=140.26 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=48.7
Q ss_pred CcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhHHHH
Q 024191 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWRR 257 (271)
Q Consensus 201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~~~~ 257 (271)
+++|+++|+||.+++|.+++.|+++++|+++++|. +++|++++|.|+||+.+++|.+
T Consensus 143 ~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~ 201 (246)
T PLN02472 143 SCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN 201 (246)
T ss_pred CeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence 47788888888888888888888888888888888 6789999999999999887654
No 54
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.76 E-value=4.5e-17 Score=150.09 Aligned_cols=158 Identities=22% Similarity=0.387 Sum_probs=128.7
Q ss_pred cEECCCC-EECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceec
Q 024191 59 VLIEVGA-IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK 137 (271)
Q Consensus 59 ~~I~~~~-~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~ 137 (271)
..+++.+ .|++++.|++++.|+++|.|++++.||++|.|+.++.|.+++||++|.|++++.+.
T Consensus 256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~---------------- 319 (459)
T PRK14355 256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLE---------------- 319 (459)
T ss_pred EEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEe----------------
Confidence 3566654 57777888888888888888888889999999999999899999999999999996
Q ss_pred CCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEEC
Q 024191 138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR 217 (271)
Q Consensus 138 ~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~ 217 (271)
+++|++++.|++++++.. ++.|++++.+++++.+ +++.|++++.+...+.+ +.+.||++|.||.++++.
T Consensus 320 -----~~~i~~~~~ig~~~~i~~----~~~i~~~~~ig~~~~~-~~~~ig~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~ 388 (459)
T PRK14355 320 -----DSVVGDDVAIGPMAHLRP----GTELSAHVKIGNFVET-KKIVMGEGSKASHLTYL-GDATIGRNVNIGCGTITC 388 (459)
T ss_pred -----CCEECCCCEECCCCEECC----CCEeCCCCEECCCccc-cCCEECCCceeeeeccc-cCCEECCCCEEccceeec
Confidence 899999999999999974 5889999999998876 57888888888766666 468999999999988763
Q ss_pred -------CCCEECCCcEEcCCcEEecc--CCCCCe
Q 024191 218 -------DHVSIASKVRLAANSCVFKD--ITEPGD 243 (271)
Q Consensus 218 -------~~~~ig~~~~i~~~s~v~~~--~~~~~~ 243 (271)
.++.||+++.|++++.+... +.+++.
T Consensus 389 ~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ 423 (459)
T PRK14355 389 NYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSL 423 (459)
T ss_pred CcCCccccCcEecCCeEEcCCCEEeCCcEECCCCE
Confidence 35778888888888877643 344554
No 55
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.76 E-value=1.3e-17 Score=136.14 Aligned_cols=113 Identities=27% Similarity=0.273 Sum_probs=85.0
Q ss_pred cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN 183 (271)
Q Consensus 104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~ 183 (271)
.++.||+++.|..++.|.... .+.||++|.|++++.|.... +.
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~------------------~I~IGd~v~Ig~~v~I~~~~-------------------h~ 116 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDY------------------TVTIGDNVLIAPNVTLSVTG-------------------HP 116 (203)
T ss_pred CCcEEcCCcEECCCcEEecCC------------------CEEECCCCEECCCCEEEeCC-------------------CC
Confidence 478888888888887775321 57777777777777665320 00
Q ss_pred cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH
Q 024191 184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR 256 (271)
Q Consensus 184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~ 256 (271)
... ..-..+.....+++||++|+||++++|.++++||++++|+++|+|.+|+|+++++.|+||+.++.+.
T Consensus 117 ~~~---~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~ 186 (203)
T PRK09527 117 VHH---ELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN 186 (203)
T ss_pred CCh---hhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence 000 0000122234679999999999999999999999999999999999999999999999999998874
No 56
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.75 E-value=1.1e-16 Score=127.71 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=60.2
Q ss_pred CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCe
Q 024191 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 243 (271)
Q Consensus 165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~ 243 (271)
++.||+++.+.+++.+..++.||++|+|+.++.+. ++.||++|+|++++.|. ++.|++++.+++++++.++.++..+
T Consensus 64 ~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~ 140 (167)
T cd00710 64 SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADAL 140 (167)
T ss_pred CEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCccccc
Confidence 45555666666666666677788888888777776 58999999999999994 6899999999999999888776554
No 57
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.75 E-value=9.6e-17 Score=147.89 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=69.6
Q ss_pred cEECCCCEECCccEEc-ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeE
Q 024191 89 VTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167 (271)
Q Consensus 89 ~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ 167 (271)
+.|+++|.|++++.|. ++.||+++.|++++.|. .++|++++.+++.+.+. ++.
T Consensus 317 ~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~---------------------~~~i~~~~~i~~~~~~~-----~~~ 370 (458)
T PRK14354 317 SKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIK---------------------KSTIGEGTKVSHLTYIG-----DAE 370 (458)
T ss_pred CEECCCcEECCceEecCCCEEeCCcEECCceEEe---------------------eeEECCCCEecceeeec-----Ccc
Confidence 4455556666665553 56666666666666664 56666666666666552 456
Q ss_pred ECCCcEECCCcEEc-------cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEc
Q 024191 168 IGDHSKIDNLVQIG-------HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 229 (271)
Q Consensus 168 ig~~~~i~~~~~i~-------~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~ 229 (271)
||+++.++.++.+. .++.|+++++++.++.+.++++||++++|+++++|.+++ ++++++.
T Consensus 371 ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~--~~~~~~~ 437 (458)
T PRK14354 371 VGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDV--PEDALAI 437 (458)
T ss_pred cCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCC--CCCCEEE
Confidence 66666666655542 246677777777777777777777777777777776643 3444443
No 58
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=9.2e-17 Score=147.94 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=34.0
Q ss_pred ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE-------ccccEECCCCEEcccceeccCcEECCCcEEccccE
Q 024191 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVA 215 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i-------~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~ 215 (271)
+++|++++.+++.+.+ .++.||+++.+++++.. ..++.||++++++.++.+.++++||++++|+++++
T Consensus 356 ~~~i~~~~~i~~~~~i-----g~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~ 430 (456)
T PRK14356 356 KAVLGKGAKANHLTYL-----GDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSV 430 (456)
T ss_pred eeEecCCcEecccccc-----cCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCE
Confidence 4444444444444433 23444444444444332 12345555555555555555555555555555555
Q ss_pred ECC
Q 024191 216 VRD 218 (271)
Q Consensus 216 i~~ 218 (271)
|.+
T Consensus 431 v~~ 433 (456)
T PRK14356 431 ITK 433 (456)
T ss_pred Eec
Confidence 554
No 59
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.73 E-value=5.9e-17 Score=121.96 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=49.7
Q ss_pred cCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhh
Q 024191 200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH 253 (271)
Q Consensus 200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~ 253 (271)
.+++|+++|+|+.++.+.+++.|++++.|++++.+.+++|+++++.|+||+.++
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~i~~~~~~~G~pa~~~~ 119 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPARIIG 119 (119)
T ss_pred CCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCcCCCCeEEecCcceecC
Confidence 458899999999999999999999999999999999999999999999998753
No 60
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.73 E-value=6.7e-17 Score=136.72 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=47.2
Q ss_pred ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEE-c-----------CCCc
Q 024191 183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-G-----------FPAV 250 (271)
Q Consensus 183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~-g-----------~p~~ 250 (271)
++.|+++|+|+.++.+..+++||++|.|+++++|.+++.|.+. .+++++.+++|+++.+. | .||.
T Consensus 176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~---~~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~~~ 252 (272)
T PRK11830 176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDR---ETGEVHYGRVPAGSVVVPGSLPSKDGGYSLYCAV 252 (272)
T ss_pred CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcC---CCCcEEeeecCCCcEEecCcccccCCCcCCcCcE
Confidence 4555555555555555666777777777777777777777776 36677777777777653 5 4676
Q ss_pred hhhHHH
Q 024191 251 PIHEWR 256 (271)
Q Consensus 251 ~i~~~~ 256 (271)
.++..+
T Consensus 253 i~~~~~ 258 (272)
T PRK11830 253 IVKKVD 258 (272)
T ss_pred EEEEcc
Confidence 666553
No 61
>PRK10502 putative acyl transferase; Provisional
Probab=99.73 E-value=5.3e-17 Score=131.18 Aligned_cols=108 Identities=31% Similarity=0.329 Sum_probs=82.5
Q ss_pred ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV 184 (271)
Q Consensus 105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~ 184 (271)
++.||+++.|++++.|.... .+.||++|.|+.++.|..+. ++.
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~------------------~v~IG~~~~I~~~~~I~~~~-------------------h~~ 113 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLG------------------EITIGAHCVISQKSYLCTGS-------------------HDY 113 (182)
T ss_pred eEEECCCeEECCCceecccC------------------ceEECCCcEECCCeEEECCC-------------------CCC
Confidence 68888888888888886311 56677777777666554320 000
Q ss_pred EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191 185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~ 255 (271)
. . .....+..+++|||+|+||++++|.++++||++++|+++++|.+|+|++++++|+||+.++++
T Consensus 114 ~-~-----~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r 178 (182)
T PRK10502 114 S-D-----PHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPR 178 (182)
T ss_pred c-C-----CCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEeccc
Confidence 0 0 001124567999999999999999999999999999999999999999999999999988765
No 62
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.73 E-value=1.4e-16 Score=125.31 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=36.5
Q ss_pred cEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcCCCchhhHHHH
Q 024191 202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWRR 257 (271)
Q Consensus 202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~p~~~i~~~~~ 257 (271)
+.||++++|+.++.+.+++.|++++.+++++.+. ++++++.+|.|+|++.++.+.+
T Consensus 79 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~ 136 (154)
T cd04650 79 AKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTE 136 (154)
T ss_pred cEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCH
Confidence 3455555555555555555666666666666655 3678888888889888877654
No 63
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.70 E-value=1.8e-16 Score=129.24 Aligned_cols=139 Identities=21% Similarity=0.201 Sum_probs=107.3
Q ss_pred cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN 183 (271)
Q Consensus 104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~ 183 (271)
.+..+|+++.++.++.+... + .....||+++.|++++.+... .++.||+++.+++++.+..+
T Consensus 42 ~~I~iG~~v~i~~~~ri~~~-------~---------~~~i~IG~~v~Ig~~v~I~~~--~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 42 GSINFGEGFTSGVGLRLDAF-------G---------RGKLFFGDNVQVNDYVHIACI--ESITIGRDTLIASKVFITDH 103 (192)
T ss_pred CeEEECCceEECCCeEEEec-------C---------CCeEEECCCCEECCCcEEccC--ceEEECCCCEECCCeEEECC
Confidence 47789999999999998521 0 127899999999999998754 46788888888887777543
Q ss_pred cE--E-CCCCEEcc------cceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191 184 VA--I-GKSCMLCG------QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 254 (271)
Q Consensus 184 ~~--i-g~~~~i~~------~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~ 254 (271)
.. + ....+... .....+++.||++|+||.+++|.++++||++++|+++++|.+++|+++++.|.||+.++.
T Consensus 104 ~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~ 183 (192)
T PRK09677 104 NHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKK 183 (192)
T ss_pred CCccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEec
Confidence 21 0 00011111 111235799999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 024191 255 WRRQVA 260 (271)
Q Consensus 255 ~~~~~~ 260 (271)
+..+..
T Consensus 184 ~~~~~~ 189 (192)
T PRK09677 184 YNHETK 189 (192)
T ss_pred cCcccc
Confidence 876443
No 64
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.70 E-value=4.8e-16 Score=127.37 Aligned_cols=102 Identities=30% Similarity=0.436 Sum_probs=85.3
Q ss_pred eEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEEC
Q 024191 144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 223 (271)
Q Consensus 144 ~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig 223 (271)
+.||+++.|+++++|. .++.||+++.+..++.+++++.|+++++++.++.+.++++|+++|+|+.++.+.+++.|+
T Consensus 100 ~~ig~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~ 175 (201)
T TIGR03570 100 ASIGEGTVIMAGAVIN----PDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIG 175 (201)
T ss_pred CEECCCCEECCCCEEC----CCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEEC
Confidence 3344444444444443 235667777777778888888999999999999999999999999999999999999999
Q ss_pred CCcEEcCCcEEeccCCCCCeEEcCCC
Q 024191 224 SKVRLAANSCVFKDITEPGDYGGFPA 249 (271)
Q Consensus 224 ~~~~i~~~s~v~~~~~~~~~~~g~p~ 249 (271)
++++|++++++.+++|++++|.|+||
T Consensus 176 ~~~~i~~~~~v~~~~~~~~~~~g~pa 201 (201)
T TIGR03570 176 AGAIVGAGAVVTKDIPDGGVVVGVPA 201 (201)
T ss_pred CCCEECCCCEECCcCCCCCEEEeccC
Confidence 99999999999999999999999997
No 65
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.69 E-value=3.9e-16 Score=124.06 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=104.6
Q ss_pred ECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191 91 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 169 (271)
Q Consensus 91 Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig 169 (271)
|++++.|.+.+.| .++.||+++.|++++.|.... +.+.||++|.|++++.|.... ..
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~-----------------~~i~IG~~~~I~~~~~I~~~~-----~~ 59 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEA-----------------GPIIIGENNIIEEQVTIVNKK-----PK 59 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCC-----------------CCeEECCCCEECCCcEEecCC-----CC
Confidence 3455555555555 678888888888888885321 267888888888888775321 00
Q ss_pred CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEecc--CCCCCeEEcC
Q 024191 170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGF 247 (271)
Q Consensus 170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~g~ 247 (271)
+. ..+.++.||+++.+..++.+.+ ++|||+|+|+.++.|.+++.|+++++|+++++|.++ +|+++++.|+
T Consensus 60 ~~-------~~~~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~ 131 (164)
T cd04646 60 DP-------AEPKPMIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGA 131 (164)
T ss_pred CC-------CCCCCeEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCC
Confidence 00 1234466777777777776665 999999999999999999999999999999999998 8999999999
Q ss_pred CCchhh-H-----HHHHHHHhhccc
Q 024191 248 PAVPIH-E-----WRRQVANQIRSS 266 (271)
Q Consensus 248 p~~~i~-~-----~~~~~~~~~r~~ 266 (271)
|+...- + ..+.+..|.||.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (164)
T cd04646 132 DCLRRTQTDRPKPQTLQLDFLRKIL 156 (164)
T ss_pred ceEEEecCCCchhHHHHHHHHHHHc
Confidence 974422 2 234455555554
No 66
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.68 E-value=1.9e-15 Score=120.60 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=49.9
Q ss_pred ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
.+.||+++.|++++.+. .++.||+++.++.++.+ .++.|+++++|+.++.+. ++.|++++.+++++++.++...
T Consensus 64 ~v~Ig~~~~I~~~~~i~----g~~~Ig~~~~Ig~~~~I-~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~ 137 (167)
T cd00710 64 SVWIGKNVSIAHGAIVH----GPAYIGDNCFIGFRSVV-FNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQA 137 (167)
T ss_pred CEEECCCceECCCCEEe----CCEEECCCCEECCCCEE-ECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCcc
Confidence 56666667776666665 34777777777777777 467788888877777664 4667777777666666554443
No 67
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.68 E-value=2.1e-15 Score=118.63 Aligned_cols=72 Identities=24% Similarity=0.319 Sum_probs=35.9
Q ss_pred EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEc
Q 024191 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG 246 (271)
Q Consensus 167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g 246 (271)
.|++++.++.++.+ +++.|+++++|+.++.+.++++|+++|+|+.+++|.+++.+ |+++++.|
T Consensus 62 ~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i----------------~~~~~~~g 124 (153)
T cd04645 62 IIGDNVTVGHGAVL-HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVI----------------PPGSLVAG 124 (153)
T ss_pred EEcCCcEECCCcEE-eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEe----------------CCCCEEeC
Confidence 33333333333333 22445555555444444455555555555555555554444 55555556
Q ss_pred CCCchhhHH
Q 024191 247 FPAVPIHEW 255 (271)
Q Consensus 247 ~p~~~i~~~ 255 (271)
.|++.++++
T Consensus 125 ~~~~~~~~~ 133 (153)
T cd04645 125 SPAKVVREL 133 (153)
T ss_pred CcchhcccC
Confidence 666555544
No 68
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.68 E-value=1.3e-15 Score=123.94 Aligned_cols=99 Identities=29% Similarity=0.421 Sum_probs=82.9
Q ss_pred ECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCC
Q 024191 146 IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASK 225 (271)
Q Consensus 146 Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~ 225 (271)
+++++.|++++.+. .++.||+++.+..++.+++++.|+++++++.++.+.++++||++|+|+.++.|.+++.|+++
T Consensus 99 ig~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~ 174 (197)
T cd03360 99 IGEGCVIMAGAVIN----PDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAG 174 (197)
T ss_pred ECCCCEEcCCCEEC----CCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCC
Confidence 34444444444443 24566777777777888888889999999999999999999999999999999999999999
Q ss_pred cEEcCCcEEeccCCCCCeEEcCC
Q 024191 226 VRLAANSCVFKDITEPGDYGGFP 248 (271)
Q Consensus 226 ~~i~~~s~v~~~~~~~~~~~g~p 248 (271)
+.++++++|.+++|+++++.|+|
T Consensus 175 ~~v~~~~~v~~~~~~~~~~~g~p 197 (197)
T cd03360 175 AIIGAGAVVTKDVPDGSVVVGNP 197 (197)
T ss_pred CEECCCCEEcCCCCCCCEEEecC
Confidence 99999999999999999999998
No 69
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=118.81 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=55.1
Q ss_pred EECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCC
Q 024191 167 VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE 240 (271)
Q Consensus 167 ~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~ 240 (271)
.||+++.+++++.+ |.|+|+++|.||-++.++++++||++|.||++++|.++.+++++..+ |..+.+.+.+.+
T Consensus 74 ~IG~~vtIGH~aiv-HGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~ 147 (176)
T COG0663 74 TIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDD 147 (176)
T ss_pred EECCCcEEcCccEE-EEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCCh
Confidence 33333333333444 66888888888888888999999999999999999999999999876 555566666653
No 70
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.67 E-value=5.5e-16 Score=124.94 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=80.7
Q ss_pred cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccc
Q 024191 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN 183 (271)
Q Consensus 104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~ 183 (271)
.+..||+++.|+.++.|.... ...||++|.|++++++....
T Consensus 72 ~~i~iG~~~~in~~~~i~d~~------------------~I~IGd~v~I~~~v~i~t~~--------------------- 112 (183)
T PRK10092 72 YNIFLGNNFYANFDCVMLDVC------------------PIRIGDNCMLAPGVHIYTAT--------------------- 112 (183)
T ss_pred CCcEEcCCcEECCceEEecCc------------------eEEECCCCEECCCCEEEcCC---------------------
Confidence 367777777777777665321 45677777776666664320
Q ss_pred cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhH
Q 024191 184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 254 (271)
Q Consensus 184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~ 254 (271)
...+......+..+.+++.||++|+||++++|.++++||++++|+++++|.+|+|+++++.|+||+.++.
T Consensus 113 -h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~ 182 (183)
T PRK10092 113 -HPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK 182 (183)
T ss_pred -CCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence 0001111112233457899999999999999999999999999999999999999999999999998764
No 71
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.67 E-value=2.1e-15 Score=119.64 Aligned_cols=66 Identities=24% Similarity=0.299 Sum_probs=40.2
Q ss_pred EECCCcEEccccEECCCCEECCCcEEcCCcEEecc--CCCCCeEEcCCCchhhHHHHHHHHhhccccc
Q 024191 203 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVPIHEWRRQVANQIRSSKK 268 (271)
Q Consensus 203 ~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~g~p~~~i~~~~~~~~~~~r~~~~ 268 (271)
.|++++.|+.+++|.+++.|++++.|++++.+..+ +|+++++.|.|++.++++..+.+.+..+..+
T Consensus 91 ~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~~~~~~~ 158 (161)
T cd03359 91 QIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEEETK 158 (161)
T ss_pred EEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHHHHhhHh
Confidence 34444444444444444444444444444444433 5889999999999999988777777665444
No 72
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.67 E-value=8.4e-16 Score=122.86 Aligned_cols=108 Identities=31% Similarity=0.323 Sum_probs=80.4
Q ss_pred ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV 184 (271)
Q Consensus 105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~ 184 (271)
+..||+++.|+.++.+... ....||+++.|++++.|.+.. +..
T Consensus 62 ~i~IG~~v~I~~~~~i~~~------------------~~i~IG~~v~Ig~~~~I~~~~-------------------h~~ 104 (169)
T cd03357 62 NIHIGDNFYANFNCTILDV------------------APVTIGDNVLIGPNVQIYTAG-------------------HPL 104 (169)
T ss_pred cCEECCCceEcCCEEEecc------------------CcEEECCCCEECCCCEEEeCC-------------------CCC
Confidence 6778888888877777421 167777777777777665421 000
Q ss_pred EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191 185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252 (271)
Q Consensus 185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i 252 (271)
...+. .......++++||++|+||.+++|.++++||++++|+++++|.+|+|++++|.|+||+.+
T Consensus 105 ~~~~~---~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~vp~~~vv~G~PAkvi 169 (169)
T cd03357 105 DPEER---NRGLEYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI 169 (169)
T ss_pred ChhHc---cccceecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccccCCCcEEEccccEEC
Confidence 00000 012234567999999999999999999999999999999999999999999999999754
No 73
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.66 E-value=1e-14 Score=115.90 Aligned_cols=92 Identities=22% Similarity=0.420 Sum_probs=56.4
Q ss_pred CCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEc-ceEECCCcEECCCCEECCCCceeEEccCCceecCCce
Q 024191 63 VGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL 141 (271)
Q Consensus 63 ~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~ 141 (271)
+++.+.+.++|++++.|++++.|.++++|+++|.|++++.|. +++|+++|.|++++.|.
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-------------------- 69 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-------------------- 69 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe--------------------
Confidence 333444444455555555555555555566666666666663 56777777777777775
Q ss_pred eceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE
Q 024191 142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI 180 (271)
Q Consensus 142 ~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i 180 (271)
+++|++++.|++++.+. ++.|++++.+++++.+
T Consensus 70 -~siig~~~~I~~~~~i~-----~siIg~~~~I~~~~~i 102 (163)
T cd05636 70 -NSIIMDGTKVPHLNYVG-----DSVLGENVNLGAGTIT 102 (163)
T ss_pred -eeEecCCCEeccCCEEe-----cCEECCCCEECCCcEE
Confidence 77777777777777663 3556655555555554
No 74
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.65 E-value=5.1e-15 Score=120.57 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=48.7
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP 241 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~ 241 (271)
+++.|+++|+|+.++.+.++++||+++.|+++++|.+++.++++++. |.++.+.+++.+.
T Consensus 87 ~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~ 147 (196)
T PRK13627 87 HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDD 147 (196)
T ss_pred eeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHH
Confidence 55677888888888888889999999999999999999999877655 5566777777643
No 75
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.65 E-value=3.3e-15 Score=110.32 Aligned_cols=56 Identities=30% Similarity=0.382 Sum_probs=52.3
Q ss_pred eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191 197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252 (271)
Q Consensus 197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i 252 (271)
.+.++++||++|+|+.++.|.++++|+++++|++++.+.+|+|+++++.|.||+.+
T Consensus 52 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa~~~ 107 (107)
T cd05825 52 LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107 (107)
T ss_pred eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCcCCCCCEEECCccEeC
Confidence 34578999999999999999999999999999999999999999999999999863
No 76
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.64 E-value=1.1e-14 Score=112.62 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=74.9
Q ss_pred EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 128 (271)
Q Consensus 49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~ 128 (271)
|++.+++++++.|++++.|.++++++.++.|++++.|.+++.|++++ .|+++|.|++++.++...
T Consensus 4 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~-----------~IG~~~~I~~~~~igg~~---- 68 (139)
T cd03350 4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCA-----------QIGKNVHLSAGAVIGGVL---- 68 (139)
T ss_pred cCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCC-----------EECCCCEECCCCEECCcc----
Confidence 55556666666666665555555555555555555555444444433 344555555555553100
Q ss_pred EccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCc
Q 024191 129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYV 208 (271)
Q Consensus 129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~ 208 (271)
.+...+++.|++++.++.++.+..++.|++++.|+.++.+.+++.|+++
T Consensus 69 ------------------------------~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~- 117 (139)
T cd03350 69 ------------------------------EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR- 117 (139)
T ss_pred ------------------------------cccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc-
Confidence 0001134555666666666666677777778888888888888888888
Q ss_pred EEccccEECCCCE
Q 024191 209 TLGGRVAVRDHVS 221 (271)
Q Consensus 209 ~Ig~~~~i~~~~~ 221 (271)
++++++.+++.
T Consensus 118 --~~~~~v~~~~~ 128 (139)
T cd03350 118 --ETGEIYYGRVP 128 (139)
T ss_pred --CcccEEecccC
Confidence 99999998654
No 77
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.63 E-value=1e-14 Score=114.72 Aligned_cols=108 Identities=25% Similarity=0.319 Sum_probs=72.7
Q ss_pred ECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191 91 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 169 (271)
Q Consensus 91 Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig 169 (271)
+++++.|.+++.| .++.||+++.|++++.|.... ..++||+++.|++++.+....
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~-----------------~~~~IG~~~~I~~~~~I~~~~------- 57 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDV-----------------NPIRIGERTNIQDGSVLHVDP------- 57 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCC-----------------CceEECCCCEECCCcEEecCC-------
Confidence 3445555555555 567777777777777665211 145666666666666554210
Q ss_pred CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEE
Q 024191 170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV 234 (271)
Q Consensus 170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v 234 (271)
..++.|+++++++.++.+.+ +.|+++++|+.++.+.++++|++++.|++++.+
T Consensus 58 -----------~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v 110 (153)
T cd04645 58 -----------GYPTIIGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLV 110 (153)
T ss_pred -----------CCCeEEcCCcEECCCcEEee-eEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 02366677777766666654 889999999999999999999999999988877
No 78
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.62 E-value=2.2e-14 Score=113.77 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=44.3
Q ss_pred cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCCC
Q 024191 184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDITE 240 (271)
Q Consensus 184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~~ 240 (271)
+.|++++.|+.++.+..+++|+++++|+.+++|.+++.+++++++++ ++.+.+++++
T Consensus 90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~ 147 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPE 147 (161)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecch
Confidence 44555555555555566788888999999999999999999999987 7788888873
No 79
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.62 E-value=1.7e-14 Score=138.12 Aligned_cols=86 Identities=29% Similarity=0.322 Sum_probs=70.9
Q ss_pred CCeEECCCcEECCCcEEccc-cEECCCCEEccccee-----------ccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191 164 RDTVIGDHSKIDNLVQIGHN-VAIGKSCMLCGQVGI-----------AGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 231 (271)
Q Consensus 164 ~~~~ig~~~~i~~~~~i~~~-~~ig~~~~i~~~~~i-----------~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~ 231 (271)
.+++||+++.++......++ +.||++|.|+.++.+ .++++||++|+||.+++|.++++||+++.|+++
T Consensus 596 lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~ 675 (695)
T TIGR02353 596 LGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPD 675 (695)
T ss_pred CCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 35889999888876444333 355555555555554 557999999999999999999999999999999
Q ss_pred cEEec--cCCCCCeEEcCCC
Q 024191 232 SCVFK--DITEPGDYGGFPA 249 (271)
Q Consensus 232 s~v~~--~~~~~~~~~g~p~ 249 (271)
|++.+ ++|+++.|.|+|+
T Consensus 676 SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 676 SLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred CEEcCCcccCCCCEEEeccC
Confidence 99999 8999999999996
No 80
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.62 E-value=2.1e-15 Score=135.84 Aligned_cols=148 Identities=19% Similarity=0.178 Sum_probs=104.0
Q ss_pred eeeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCE
Q 024191 5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV 84 (271)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~ 84 (271)
..++.|.+ +++|.++++++++++++..++.......+......+.+.+.+.+++.|++++.| .++.|+++|.|+. .
T Consensus 230 ~~v~~~~~-~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~ 305 (380)
T PRK05293 230 EKLYAYPF-KGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--T 305 (380)
T ss_pred CeEEEEEe-CCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--e
Confidence 35788888 889999999999999986665433222333344456666666667777777777 3556666666642 2
Q ss_pred ECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcC
Q 024191 85 VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164 (271)
Q Consensus 85 I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~ 164 (271)
+. ++.|+++|.|+++|.|.+|+|++++.|++++.|. +++|++++.|+.++.+..+...
T Consensus 306 v~-~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~~~~~ 363 (380)
T PRK05293 306 VE-HSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIE---------------------RAIIGENAVIGDGVIIGGGKEV 363 (380)
T ss_pred ec-ceEEcCCCEECCCCEEECCEEeCCCEECCCeEEe---------------------EEEECCCCEECCCCEEcCCCce
Confidence 33 5778888888888888889999999999998886 8888888888888888765333
Q ss_pred CeEECCCcEECCCc
Q 024191 165 DTVIGDHSKIDNLV 178 (271)
Q Consensus 165 ~~~ig~~~~i~~~~ 178 (271)
+..||+++.+..++
T Consensus 364 ~~~ig~~~~~~~~~ 377 (380)
T PRK05293 364 ITVIGENEVIGVGT 377 (380)
T ss_pred eEEEeCCCCCCCCc
Confidence 34455554444443
No 81
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.5e-15 Score=131.07 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=115.5
Q ss_pred eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191 6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV 85 (271)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I 85 (271)
.+++|+| .+||.|+++++.+|++|..|+...+...+.+++++|+......|++++..++.+ .++.++++|.|.. .|
T Consensus 234 ~v~AY~f-~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V 309 (393)
T COG0448 234 KVYAYEF-SGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TV 309 (393)
T ss_pred CEEEEec-cchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EE
Confidence 4899999 999999999999999999999866667778899999999999999999999987 4778888888844 55
Q ss_pred CCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCC
Q 024191 86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (271)
Q Consensus 86 ~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~ 161 (271)
. +++|+.++.|+.+|.|++|+|..+|.||.+|.|. .++|+++|.|++++.|...
T Consensus 310 ~-nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~---------------------~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 310 E-NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR---------------------RAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred E-eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEE---------------------EEEeCCCcEeCCCcEEcCC
Confidence 4 6779999999999999999999999999999997 9999999999999888654
No 82
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.7e-15 Score=134.73 Aligned_cols=117 Identities=29% Similarity=0.451 Sum_probs=89.9
Q ss_pred eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191 6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV 85 (271)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I 85 (271)
.++.|.+ +++|.|+++++++++++..+........+.. +...+.. +.. +.|.++++|++++.|++++.|
T Consensus 208 ~v~~~~~-~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~----~~~~~~~-----~~~-~~i~gp~~ig~~~~i~~~~~i 276 (358)
T COG1208 208 DVYGYVF-EGYWLDIGTPEDLLEANELLLRGDGKSPLGP----IEEPVVI-----IRS-AYIIGPVVIGPGAKIGPGALI 276 (358)
T ss_pred cEEEEEe-CCeEEeCCCHHHHHHHHHHHHhccccccccc----ccccccc-----ccc-ceEeCCEEECCCCEECCCCEE
Confidence 4899999 8899999999999999876664221111111 1111111 555 677777888888888888888
Q ss_pred CCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECC
Q 024191 86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 154 (271)
Q Consensus 86 ~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~ 154 (271)
+++++||++|.|++++.|.+|+|.++|.|++++.+. +++|+++|.|++
T Consensus 277 ~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~---------------------~sIi~~~~~ig~ 324 (358)
T COG1208 277 GPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIG---------------------DSIIGENCKIGA 324 (358)
T ss_pred CCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEe---------------------eeEEcCCcEECC
Confidence 888888999999999999999999999999999997 888888888875
No 83
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.60 E-value=5.7e-15 Score=125.09 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=78.4
Q ss_pred ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
.+.|+..+.||.++.|..+ ..++||+++.|++++.|.++++||.... ... ..+.+||++|+||+++.|.++++|
T Consensus 141 gidI~~~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~---~~~-~~~p~IGd~V~IGaga~Ilggv~I 214 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGK---TSG-DRHPKIREGVMIGAGAKILGNIEV 214 (273)
T ss_pred eeEecCcceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcc---cCC-CcCCEECCCcEEcCCCEEcCCCEE
Confidence 6777777777777777643 2345555555555544444444442110 000 124799999999999999999999
Q ss_pred CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191 223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~ 255 (271)
|++++|+++|+|.+|+|+++++.|+||+.+...
T Consensus 215 G~~a~IGAgSvV~~dVp~~~~v~G~PArvi~~~ 247 (273)
T PRK11132 215 GRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKP 247 (273)
T ss_pred CCCCEECCCCEECcccCCCcEEEecCcEEeCcc
Confidence 999999999999999999999999999987644
No 84
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.58 E-value=3.9e-15 Score=136.22 Aligned_cols=182 Identities=13% Similarity=0.189 Sum_probs=100.6
Q ss_pred eeeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCE
Q 024191 5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV 84 (271)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~ 84 (271)
..++.|.+ ++||.++++++++++++..++...+...+......|.......+++.+ .++.|.+ ++|+++|.|+ +|.
T Consensus 253 ~~v~~~~~-~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~ 328 (436)
T PLN02241 253 YNVQAYLF-DGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECK 328 (436)
T ss_pred CeEEEEee-CCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeE
Confidence 46889999 899999999999999998776544333333433344443333344444 3444543 5566666666 666
Q ss_pred ECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcC
Q 024191 85 VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164 (271)
Q Consensus 85 I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~ 164 (271)
|. +++|+++|.|+++|.|.+++|........+... ..+...++ .
T Consensus 329 I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~----------------------~~~~~~~~-------------~ 372 (436)
T PLN02241 329 IE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEI----------------------ASLLAEGK-------------V 372 (436)
T ss_pred EE-eeEEcCCCEECCCCEEEEeEEECCCcccccccc----------------------ccccccCC-------------c
Confidence 64 345666666666655544444221111110000 00000000 0
Q ss_pred CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS 232 (271)
Q Consensus 165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s 232 (271)
.+.|++++.+. ++.+++++.||+++.+.....+.+..++|++|.++.+. +.||+++.|.++|
T Consensus 373 ~~~Ig~~~~i~-~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~ 434 (436)
T PLN02241 373 PIGIGENTKIR-NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI-----VVILKNAVIPDGT 434 (436)
T ss_pred ceEECCCCEEc-ceEecCCCEECCCcEEecccccCCccccccccEEeCCE-----EEEcCCcEeCCCC
Confidence 12445555554 35566667777777777777777777777777777763 3444455555544
No 85
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.58 E-value=1.2e-14 Score=118.38 Aligned_cols=59 Identities=32% Similarity=0.370 Sum_probs=54.6
Q ss_pred eccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH
Q 024191 198 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR 256 (271)
Q Consensus 198 i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~ 256 (271)
..++++||++||||++++|+++++||++++|+++|+|+||+|+++.+.|+||+.++...
T Consensus 121 ~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vir~~~ 179 (190)
T COG0110 121 GAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRD 179 (190)
T ss_pred ecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEEeCCcceEEEecc
Confidence 35679999999999999999999999999999999999999999999999999886543
No 86
>PLN02694 serine O-acetyltransferase
Probab=99.58 E-value=1.9e-14 Score=121.94 Aligned_cols=107 Identities=27% Similarity=0.363 Sum_probs=80.6
Q ss_pred ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
.+.|+..+.||.++.|..+ ..++||+++.|++++.|.+++++|.. +..+. ..+++||++|+||+++.|.++++|
T Consensus 160 gvdI~p~A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~-~r~piIGd~V~IGagA~Ilggi~I 233 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGT---GKACG-DRHPKIGDGVLIGAGATILGNVKI 233 (294)
T ss_pred eEEeCCcceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCc---ccccC-CCccEECCCeEECCeeEECCCCEE
Confidence 5556666666666666543 24566666666666666666665542 11111 246899999999999999999999
Q ss_pred CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191 223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~ 255 (271)
|++++|+++++|.+|+|+++++.|+|++.+...
T Consensus 234 Gd~a~IGAgSVV~kdVP~~~~v~G~PAkiv~~~ 266 (294)
T PLN02694 234 GEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGK 266 (294)
T ss_pred CCCCEECCCCEECCcCCCCcEEEccCcEEEccC
Confidence 999999999999999999999999999998863
No 87
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.58 E-value=9.7e-14 Score=132.99 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=68.5
Q ss_pred CeEECCCcEECC-------CcEEccccEECCCCEE-----cccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191 165 DTVIGDHSKIDN-------LVQIGHNVAIGKSCML-----CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS 232 (271)
Q Consensus 165 ~~~ig~~~~i~~-------~~~i~~~~~ig~~~~i-----~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s 232 (271)
..+||+++.+.. -.+|++++.|++++.+ .++....+.++||++++||.++++.+|+++|+++.++.+|
T Consensus 353 GAkIGk~v~i~t~~~~~pdLltIG~g~~iad~v~~~~~~~~~g~l~~~~i~IG~~afVGn~~vv~pG~~ig~~~llg~~S 432 (695)
T TIGR02353 353 GAKIGKVAEISSAQHEVPDLTDIGEETFIADGLLMGNARLSGGWFRLGRTRIGRRSFLGNSGYYPPGAKTGDNVLLGVLS 432 (695)
T ss_pred CCeeCCCeEeccccCCCCcceEECCCcEeccCcEEeeeEEeCCeEEEeeEEECCCcEEcCceeECCCCEeCCCCEEeecc
Confidence 355666655543 1334444444444443 3344455679999999999999999999999999999999
Q ss_pred EEec--cCCCCCeEEcCCCchhhHHH
Q 024191 233 CVFK--DITEPGDYGGFPAVPIHEWR 256 (271)
Q Consensus 233 ~v~~--~~~~~~~~~g~p~~~i~~~~ 256 (271)
.+++ .+++++.|.|.|+..++..+
T Consensus 433 ~~p~~~~~~~g~~w~GSPa~~l~~~~ 458 (695)
T TIGR02353 433 MTPKDGKVREGVGWLGSPPFELPRRV 458 (695)
T ss_pred cCCCCccCCCCCEEeCCCCeeCCccc
Confidence 9987 58899999999998887543
No 88
>PLN02739 serine acetyltransferase
Probab=99.57 E-value=7.5e-15 Score=126.75 Aligned_cols=107 Identities=30% Similarity=0.353 Sum_probs=78.2
Q ss_pred ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
++.|+..+.||.++.|..+ ..++||+++.|++++.|.++++||.... ..-..+.+||++|+||+++.|.++++|
T Consensus 205 GidI~p~A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~----~~g~r~p~IGd~V~IGagA~IlG~V~I 278 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGK----ETGDRHPKIGDGALLGACVTILGNISI 278 (355)
T ss_pred CcccCCCccccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCC----cCCCCCcEECCCCEEcCCCEEeCCeEE
Confidence 5566666777766666532 2455555555555555555444442210 001235899999999999999999999
Q ss_pred CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191 223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~ 255 (271)
|++++|+++++|.+|+|+++++.|+||+.++..
T Consensus 279 Gd~aiIGAGSVV~kDVP~~stvvG~PAriI~~~ 311 (355)
T PLN02739 279 GAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFV 311 (355)
T ss_pred CCCCEECCCCEECCCCCCCcEEEecCCEEeccC
Confidence 999999999999999999999999999988753
No 89
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.57 E-value=9.7e-14 Score=113.95 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=40.9
Q ss_pred ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191 181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS 232 (271)
Q Consensus 181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s 232 (271)
..++.||++++++.++.+.++++||+++.|+++++|.++ +++++++.+..
T Consensus 106 ~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~P 155 (204)
T TIGR03308 106 AKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGVP 155 (204)
T ss_pred CCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEecC
Confidence 356778888888888888889999999999999999985 67787776543
No 90
>PLN02296 carbonate dehydratase
Probab=99.56 E-value=1.5e-13 Score=116.91 Aligned_cols=140 Identities=18% Similarity=0.245 Sum_probs=89.0
Q ss_pred EECCCcEECCCCEECcCcEECCCcEECCCCEECCC---cEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEc
Q 024191 54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD 130 (271)
Q Consensus 54 ~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~---~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~ 130 (271)
.|++++.|.+++.|.+++.||+++.|+++|+|.+. +.||++|.|+++|.|.... +.+. ...
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~----~~~~--g~~---------- 117 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAK----TNLS--GKV---------- 117 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCC----Cccc--CCC----------
Confidence 34444444444444445556666666666666543 3555555555554442110 0000 000
Q ss_pred cCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEE
Q 024191 131 EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTL 210 (271)
Q Consensus 131 ~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~I 210 (271)
..++||+++.|++++++ +++.|+++|+|+.++.+.++++|++++.|
T Consensus 118 -----------~~siIG~~v~IG~~avI-----------------------~g~~Igd~v~IG~ga~I~~gv~Ig~~a~I 163 (269)
T PLN02296 118 -----------LPTIIGDNVTIGHSAVL-----------------------HGCTVEDEAFVGMGATLLDGVVVEKHAMV 163 (269)
T ss_pred -----------CCcEeCCCCEECCCcee-----------------------cCCEECCCcEECCCcEECCCeEECCCCEE
Confidence 15666666666666544 45677777777888888899999999999
Q ss_pred ccccEECCCCEECCCcEE-cCCcEEeccCCCCCe
Q 024191 211 GGRVAVRDHVSIASKVRL-AANSCVFKDITEPGD 243 (271)
Q Consensus 211 g~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~~~ 243 (271)
+++++|.+++.|++++++ +.++.+.+++++...
T Consensus 164 gagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~~ 197 (269)
T PLN02296 164 AAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEI 197 (269)
T ss_pred CCCCEEecCCEeCCCeEEeccCcEEeCCCCHHHH
Confidence 999999999999999986 666777788876554
No 91
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.55 E-value=2.1e-13 Score=107.45 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=44.1
Q ss_pred ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEc-CCcEEeccCCCC
Q 024191 183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITEP 241 (271)
Q Consensus 183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~-~~s~v~~~~~~~ 241 (271)
++.||++++|+.++.+.++++|+++++|++++++.+++.|++++++. .++.+.+++++.
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~ 137 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDE 137 (155)
T ss_pred CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHH
Confidence 35566666666666667788999999999999999999999998874 444555665533
No 92
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.55 E-value=9.4e-14 Score=112.76 Aligned_cols=60 Identities=13% Similarity=0.319 Sum_probs=46.2
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP 241 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~ 241 (271)
+++.|+++++|+.++.+..+++||+++.|++++.|.+++.+++++++ +.++.+.+.+.+.
T Consensus 85 ~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~~ 145 (192)
T TIGR02287 85 HGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQ 145 (192)
T ss_pred cCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCHH
Confidence 44666666666666667778899999999999999999999999886 4556676776653
No 93
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.55 E-value=7.4e-14 Score=110.68 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=48.1
Q ss_pred CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCc
Q 024191 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAV 250 (271)
Q Consensus 201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~ 250 (271)
..+||++|+|++++.|..+++||+++.|+++++|.+|+|+++++.|+||+
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~G~Par 162 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGVPAR 162 (162)
T ss_pred CCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEEEeecCC
Confidence 47999999999999999999999999999999999999999999999986
No 94
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.55 E-value=1.5e-14 Score=128.98 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=57.5
Q ss_pred eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191 6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV 85 (271)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I 85 (271)
.++.|.+ +++|.++++++++++++..++..... .+ . .+.+.+.+.+++.|++++.| ++++|.+++.||++|.|
T Consensus 208 ~v~~~~~-~g~w~digt~~dl~~a~~~ll~~~~~-~~-~---~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I 280 (353)
T TIGR01208 208 KVGGSKV-TGWWKDTGKPEDLLDANRLILDEVER-EV-Q---GVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCII 280 (353)
T ss_pred eEEEEEe-CcEEEeCCCHHHHHHHHHHHHhhccc-cc-C---CcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEE
Confidence 5888999 89999999999999998777664321 11 1 13444445555555555555 34444444444444444
Q ss_pred CCCcEECCCCEECCccE-----EcceEECCCcEECCC
Q 024191 86 GPAVTIGQSTNIGFNVA-----LSNCIIGDSCIIHNG 117 (271)
Q Consensus 86 ~~~~~Ig~~~~Ig~~~~-----I~~~~Ig~~~~I~~~ 117 (271)
+ ++.|.++|.|+++|. |.+++|++++.|+++
T Consensus 281 ~-~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~ 316 (353)
T TIGR01208 281 E-NSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGV 316 (353)
T ss_pred c-CcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCC
Confidence 3 223333333333333 344444444444444
No 95
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.55 E-value=1.1e-13 Score=107.57 Aligned_cols=135 Identities=21% Similarity=0.165 Sum_probs=88.9
Q ss_pred eEECCCcEECC-CCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191 106 CIIGDSCIIHN-GVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV 184 (271)
Q Consensus 106 ~~Ig~~~~I~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~ 184 (271)
..||+++.|+. .+.+.. ..+.||++|.|++++.+..+..++. ++....+. ....+.
T Consensus 2 ~~iG~~s~i~~~~~~~~~-------------------~~i~IG~~~~I~~~v~i~~~~~H~~---~~~~~~p~-~~~~~~ 58 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGG-------------------DKLSIGKFCSIAPGVKIGLGGNHPT---DWVSTYPF-YIFGGE 58 (145)
T ss_pred EEEeCceeeCCCCceEeC-------------------CCeEECCCCEECCCCEECCCCCCCC---CCccccce-Eeeccc
Confidence 46788888877 455542 2688888888888888765311110 00000000 000000
Q ss_pred EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHH--HHHHHh
Q 024191 185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR--RQVANQ 262 (271)
Q Consensus 185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~--~~~~~~ 262 (271)
..++ ..........++.||++|+||.+++|.+++.|+++++|+++++|.+|+|++++++|+||+.++.+. +..+.+
T Consensus 59 ~~~~--~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~~~~~~~~~~ 136 (145)
T cd03349 59 WEDD--AKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYRFDEETIERL 136 (145)
T ss_pred cccc--cccccccccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhhCCHHHHHHH
Confidence 0000 111122345679999999999999999999999999999999999999999999999999998753 334444
Q ss_pred hcc
Q 024191 263 IRS 265 (271)
Q Consensus 263 ~r~ 265 (271)
.++
T Consensus 137 ~~~ 139 (145)
T cd03349 137 LAL 139 (145)
T ss_pred HHC
Confidence 443
No 96
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.54 E-value=4e-13 Score=112.26 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=97.9
Q ss_pred ccHHHHHHHHhhhccCCCCCch---h-hhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCc
Q 024191 14 KTYKQDFGRFCNLFSTKSDIES---R-QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV 89 (271)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~ 89 (271)
...|.++....++|........ . .+...+......|++++.+.+++.|++++.|++++.|+.++.||++|.|++++
T Consensus 50 ~Di~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a 129 (231)
T TIGR03532 50 EDIEPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNA 129 (231)
T ss_pred HHHHHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEcccc
Confidence 3348888888888876431111 0 12223445566778888777778888888777777777777777777777776
Q ss_pred EECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191 90 TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 169 (271)
Q Consensus 90 ~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig 169 (271)
.|+.++.|+++|. |+.++.|.. .+.. ..
T Consensus 130 ~I~~~s~Ig~~~~-----Ig~~~~I~~--~~~~--------------------~~------------------------- 157 (231)
T TIGR03532 130 VLGGRATVGKNVH-----IGAGAVLAG--VIEP--------------------PS------------------------- 157 (231)
T ss_pred ccCCCcEECCCcE-----EcCCcEEcc--cccc--------------------cc-------------------------
Confidence 6666666666644 444444443 1221 00
Q ss_pred CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC-cEEeccCC
Q 024191 170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDIT 239 (271)
Q Consensus 170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~-s~v~~~~~ 239 (271)
...+.|+++|+++.++.+.++++||++++|+++++|.++ +++++++.+. +.+.+.++
T Consensus 158 -----------~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G~PA~~i~~~~ 215 (231)
T TIGR03532 158 -----------AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAGVPAKVIKQVD 215 (231)
T ss_pred -----------CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEeccCC
Confidence 022344444444555555667888889999999998874 5666666543 33444444
No 97
>PLN02472 uncharacterized protein
Probab=99.54 E-value=2.6e-13 Score=114.01 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=44.8
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCCC
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDITE 240 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~~ 240 (271)
+++.|+++|.|+.++.+..+++|++++.|+++++|.++..++++.+..+ ++.+.+++.+
T Consensus 142 ~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~ 201 (246)
T PLN02472 142 RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN 201 (246)
T ss_pred CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence 3456666666666666777889999999999999999999999988854 4455556654
No 98
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.54 E-value=2.4e-13 Score=114.19 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=79.4
Q ss_pred ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
+...+.++.+++.+++++.|+++++|.+. .+..++.||++|+|..++.|++++.||+ +|+|..++.|+
T Consensus 96 ~~~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~-----------nv~I~~g~~Ig 163 (269)
T TIGR00965 96 FKKAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGK-----------NVHLSGGVGIG 163 (269)
T ss_pred eecCCEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECC-----------CCEEcCCcccC
Confidence 44455666666666666666666666543 4555555555555555555555444443 44444443332
Q ss_pred CCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccC
Q 024191 122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 201 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~ 201 (271)
.. +.+...+++.|++++.|+.++.|.+++.|++++.|+.++.+.++
T Consensus 164 G~----------------------------------~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 164 GV----------------------------------LEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred CC----------------------------------cccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence 10 00001133444444444444444555666666666666666666
Q ss_pred cEECCCcEEccccEECCCCEECCCcEEcCCcEEecc
Q 024191 202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD 237 (271)
Q Consensus 202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~ 237 (271)
+.|.+.. .+.++.+ .|++++++.+|+...++
T Consensus 210 ~~I~~~~---~g~v~~~--~vp~~svv~~g~~p~~~ 240 (269)
T TIGR00965 210 TKIYDRE---TGEIHYG--RVPAGSVVVSGNLPSKD 240 (269)
T ss_pred CEEeccc---CCceeee--ecCCCcEEecCCeecCC
Confidence 6666655 4444433 58889999888887654
No 99
>PRK10191 putative acyl transferase; Provisional
Probab=99.54 E-value=8.6e-14 Score=107.77 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=74.6
Q ss_pred ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
+..|...+.|++++.+..+ ..+.|+.++.+++++.+++++.||+.... ..+.++|||+|+||+++.+.+++.|
T Consensus 41 g~~I~~~a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~~-----~~~~~~IGd~~~Ig~~~~I~~~v~I 113 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGAD-----NMACPHIGNGVELGANVIILGDITI 113 (146)
T ss_pred CcccCCCCEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCcC-----CCCCCEECCCcEEcCCCEEeCCCEE
Confidence 3334444444444444332 23555666666666666666666655322 2355799999999999999999999
Q ss_pred CCCcEEcCCcEEeccCCCCCeEEcCCCch
Q 024191 223 ASKVRLAANSCVFKDITEPGDYGGFPAVP 251 (271)
Q Consensus 223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~ 251 (271)
|+++.|++++.+.+|+|+++++.|.||+.
T Consensus 114 G~~~~Igags~V~~dv~~~~~v~G~pA~~ 142 (146)
T PRK10191 114 GNNVTVGAGSVVLDSVPDNALVVGEKARV 142 (146)
T ss_pred CCCCEECCCCEECCccCCCcEEEccCcEE
Confidence 99999999999999999999999999975
No 100
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.53 E-value=2.5e-14 Score=114.59 Aligned_cols=90 Identities=30% Similarity=0.379 Sum_probs=71.9
Q ss_pred CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeE
Q 024191 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY 244 (271)
Q Consensus 165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~ 244 (271)
..+||+-+.+++++.+.|++.+|.- +.++.-..+ .|||+++||+++.|.+++.||.+++|++||+|.||+|++++.
T Consensus 168 gvvigeTAvvg~~vSilH~Vtlggt---gk~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~A 243 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILHPVTLGGT---GKGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLA 243 (269)
T ss_pred ceeecceeEeccceeeecceeeccc---cccccccCC-cccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCcee
Confidence 3566777777777777777776632 112223334 899999999999999999999999999999999999999999
Q ss_pred EcCCCchhhHHHHH
Q 024191 245 GGFPAVPIHEWRRQ 258 (271)
Q Consensus 245 ~g~p~~~i~~~~~~ 258 (271)
.|+||+.++...++
T Consensus 244 vGnPAklIg~~~e~ 257 (269)
T KOG4750|consen 244 VGNPAKLIGKIDEK 257 (269)
T ss_pred cCCchhhccccccc
Confidence 99999999965543
No 101
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.53 E-value=1.7e-13 Score=104.58 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=58.1
Q ss_pred CeEECCCcEEC----CCcEEccccEECCCCEEcccceeccC----cEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191 165 DTVIGDHSKID----NLVQIGHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK 236 (271)
Q Consensus 165 ~~~ig~~~~i~----~~~~i~~~~~ig~~~~i~~~~~i~~~----v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~ 236 (271)
++.||+++++. .++.|+|++.|++++.|. +.+.++ +.||++|+||.+++| ++.||++++|+++++|.|
T Consensus 31 ~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k 106 (147)
T cd04649 31 NAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTA 106 (147)
T ss_pred CCEECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeC
Confidence 35556666655 778888888888888887 566667 999999999999999 799999999999999998
Q ss_pred cC
Q 024191 237 DI 238 (271)
Q Consensus 237 ~~ 238 (271)
..
T Consensus 107 ~t 108 (147)
T cd04649 107 GT 108 (147)
T ss_pred Ce
Confidence 65
No 102
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.51 E-value=4e-13 Score=102.52 Aligned_cols=38 Identities=26% Similarity=0.533 Sum_probs=30.9
Q ss_pred ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
++.||++|+|+.++.+ ++.||+++.||++++|.++++|
T Consensus 73 pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i 110 (147)
T cd04649 73 VISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred CEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence 3677777777777777 5899999999999999998887
No 103
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.50 E-value=1.7e-14 Score=122.00 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=102.6
Q ss_pred CccceeeEEeeccccHHHHHHHHhhhccCCCCCchhhh--hhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcE
Q 024191 1 MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQ--FQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVC 78 (271)
Q Consensus 1 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~ 78 (271)
||....+|+|.+ +|||.|++++.+++++...++...+ -..-+.+++.|..++.+.+-+.+|++|.|++++.||++++
T Consensus 212 ~a~~~~l~a~~l-~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~ 290 (371)
T KOG1322|consen 212 MAEEHQLYAFDL-PGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVR 290 (371)
T ss_pred hhhcCceEEEec-CchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcE
Confidence 567788999999 9999999999999999655543221 1122333455777777778888888888888888888888
Q ss_pred ECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEE
Q 024191 79 IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158 (271)
Q Consensus 79 Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i 158 (271)
|++++.|.+.+.+ .+..++.++.|..+.+|.++.||.++.|.. +++||+++.|...-.+
T Consensus 291 i~~gV~l~~s~il-~~~~~~~~s~i~s~ivg~~~~IG~~~~id~--------------------~a~lG~nV~V~d~~~v 349 (371)
T KOG1322|consen 291 IEDGVRLQDSTIL-GADYYETHSEISSSIVGWNVPIGIWARIDK--------------------NAVLGKNVIVADEDYV 349 (371)
T ss_pred ecCceEEEeeEEE-ccceechhHHHHhhhccccccccCceEEec--------------------ccEeccceEEeccccc
Confidence 8888888866666 457788888888888888888888887763 6777777776655444
Q ss_pred e
Q 024191 159 D 159 (271)
Q Consensus 159 ~ 159 (271)
.
T Consensus 350 n 350 (371)
T KOG1322|consen 350 N 350 (371)
T ss_pred c
Confidence 3
No 104
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.50 E-value=7.8e-13 Score=108.26 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=31.1
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
.++.++++++++.++.+.+++.|+++|+|++++++.++ +++++++.+
T Consensus 152 ~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g 198 (201)
T TIGR03570 152 GGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVVG 198 (201)
T ss_pred CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEEe
Confidence 44455555555555666667888888888888888764 556655543
No 105
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.49 E-value=8.9e-13 Score=107.12 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=32.1
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
+++.|+++|+++.++.+.++++||+++.|+++++|.++ +++++++.+
T Consensus 149 ~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~g 195 (197)
T cd03360 149 GGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVVG 195 (197)
T ss_pred CCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEEe
Confidence 44555555666666666677888888888888888875 456665544
No 106
>PLN02357 serine acetyltransferase
Probab=99.49 E-value=1.7e-13 Score=119.33 Aligned_cols=107 Identities=28% Similarity=0.386 Sum_probs=77.8
Q ss_pred ceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 143 ~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
.+.|+..+.||.++.+... ..++||+++.|++++.|.++++||....- .. ..+++||++|+||+++.|.++++|
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~---~g-~~~piIGd~V~IGagA~IlggV~I 299 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQ---SG-DRHPKIGDGVLIGAGTCILGNITI 299 (360)
T ss_pred ceeeCCCCEECCCeEECCC--CceEECCCCEECCCCEEeCCceecCcccc---CC-ccCceeCCCeEECCceEEECCeEE
Confidence 4456666666666655532 23555555555555555555555542110 00 235899999999999999999999
Q ss_pred CCCcEEcCCcEEeccCCCCCeEEcCCCchhhHH
Q 024191 223 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 255 (271)
Q Consensus 223 g~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~ 255 (271)
|++++|+++++|.+|+|+++++.|+||+.+...
T Consensus 300 Gdga~IGAgSVV~~dVP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 300 GEGAKIGAGSVVLKDVPPRTTAVGNPARLIGGK 332 (360)
T ss_pred CCCCEECCCCEECcccCCCcEEECCCeEEEccC
Confidence 999999999999999999999999999998754
No 107
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.49 E-value=2.4e-13 Score=107.71 Aligned_cols=53 Identities=28% Similarity=0.445 Sum_probs=51.0
Q ss_pred CcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhh
Q 024191 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH 253 (271)
Q Consensus 201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~ 253 (271)
+-+||+++.||+++.|..+.+||+++.||++|+|.||+|+++++.|.||+.+.
T Consensus 119 hPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~tvvGvPArii~ 171 (194)
T COG1045 119 HPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIG 171 (194)
T ss_pred CCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCCCceEecCcceEec
Confidence 46899999999999999999999999999999999999999999999999987
No 108
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.5e-13 Score=125.04 Aligned_cols=130 Identities=25% Similarity=0.371 Sum_probs=96.7
Q ss_pred HHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCc
Q 024191 21 GRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN 100 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~ 100 (271)
.+|.+++-+...+.....+.. --.+.+-++.+.+...|.++.++.||.++.||.++.|. |++||.+|.||.+
T Consensus 291 ~RW~YP~Vpd~~~~~~q~~~~-------~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN 362 (673)
T KOG1461|consen 291 QRWTYPLVPDINFSGNQTFSL-------ERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSN 362 (673)
T ss_pred HhhcccccccccCCCCceeee-------cccccccCccceehhhccccceEEecccccccCCCeee-cceecCCCEecCc
Confidence 666666665554443221111 11234457778888888888899999999999999998 6779999999999
Q ss_pred cEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEE
Q 024191 101 VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI 180 (271)
Q Consensus 101 ~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i 180 (271)
+.|.++.|+++|.|+++|.|. +++|++++.|+.++++.++ +++|.+++++.+..+
T Consensus 363 ~~I~~S~iw~~v~Igdnc~I~---------------------~aii~d~v~i~~~~~l~~g----~vl~~~VVv~~~~~l 417 (673)
T KOG1461|consen 363 VRIKNSFIWNNVTIGDNCRID---------------------HAIICDDVKIGEGAILKPG----SVLGFGVVVGRNFVL 417 (673)
T ss_pred eEEeeeeeecCcEECCCceEe---------------------eeEeecCcEeCCCcccCCC----cEEeeeeEeCCCccc
Confidence 999999999999999999997 9999999999999888754 455555555444444
Q ss_pred ccc
Q 024191 181 GHN 183 (271)
Q Consensus 181 ~~~ 183 (271)
..+
T Consensus 418 ~~n 420 (673)
T KOG1461|consen 418 PKN 420 (673)
T ss_pred ccc
Confidence 444
No 109
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.46 E-value=1.1e-13 Score=126.41 Aligned_cols=101 Identities=10% Similarity=0.158 Sum_probs=70.6
Q ss_pred eeeEEeeccccHHHHHHHHhhhccCCCCCc-hhhhhhcccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCC
Q 024191 5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIE-SRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGT 83 (271)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~ 83 (271)
..++.|.+ ++||.++++++.+++++..+. ..........+...+...+.+.+++.+. ++.|. +++|+++|.| +++
T Consensus 245 ~~v~~~~~-~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~ 320 (429)
T PRK02862 245 YKVQSYLF-DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLL-DATIT-ESIIAEGCII-KNC 320 (429)
T ss_pred CcEEEEEe-CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCcccc-ccEEE-eCEECCCCEE-CCc
Confidence 35788888 899999999999999987765 3222222333344455555555666663 56664 4788888888 777
Q ss_pred EECCCcEECCCCEECCccEEcceEECC
Q 024191 84 VVGPAVTIGQSTNIGFNVALSNCIIGD 110 (271)
Q Consensus 84 ~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~ 110 (271)
.|. +++|+++|.|+++|.|.+|+|+.
T Consensus 321 ~i~-~svi~~~~~Ig~~~~i~~svi~~ 346 (429)
T PRK02862 321 SIH-HSVLGIRSRIESGCTIEDTLVMG 346 (429)
T ss_pred EEE-EEEEeCCcEECCCCEEEeeEEec
Confidence 776 56788888888888888877765
No 110
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.46 E-value=1.2e-12 Score=95.56 Aligned_cols=98 Identities=30% Similarity=0.445 Sum_probs=66.4
Q ss_pred EECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECC
Q 024191 145 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS 224 (271)
Q Consensus 145 ~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~ 224 (271)
.|++++.|++++.+... ..+.|++++.+++++.+..++.|++++.+ ....+++||++++|+.++.+.++++|++
T Consensus 4 ~i~~~~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~----~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~ 77 (101)
T cd03354 4 DIHPGAKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQGVTLGGKGKG----GGKRHPTIGDNVVIGAGAKILGNITIGD 77 (101)
T ss_pred EeCCCCEECCCEEECCC--CeEEECCCCEECCCCEEcCCCEECCCccC----CcCCCCEECCCcEEcCCCEEECcCEECC
Confidence 34444444444444321 12334444444444444344444433332 1457789999999999999999999999
Q ss_pred CcEEcCCcEEeccCCCCCeEEcCC
Q 024191 225 KVRLAANSCVFKDITEPGDYGGFP 248 (271)
Q Consensus 225 ~~~i~~~s~v~~~~~~~~~~~g~p 248 (271)
+++|++++.+.+++|++.++.|.|
T Consensus 78 ~~~i~~~~~i~~~~~~~~~~~G~P 101 (101)
T cd03354 78 NVKIGANAVVTKDVPANSTVVGVP 101 (101)
T ss_pred CCEECCCCEECcccCCCCEEEeCC
Confidence 999999999999999999999998
No 111
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.46 E-value=1.7e-12 Score=110.03 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=74.2
Q ss_pred ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
|...+.+|.+++++++++.|++++.|.+ +.++.++.|+++|+|..++.|+++| .||++++|++++.|+
T Consensus 99 ~~~~~~rI~p~a~V~~ga~Ig~gavI~p-~~V~iGa~Ig~gt~I~~~a~IG~~a-----------~IG~nv~I~~gv~I~ 166 (272)
T PRK11830 99 FKEAGVRVVPGAVVRRGAYIAPNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCA-----------QIGKNVHLSGGVGIG 166 (272)
T ss_pred hccCCcEEcCCeEECCCCEECCCcEEEE-EEECCCCEECCCcEEccccEECCCC-----------EECCCcEECCCccCC
Confidence 3455555555555555555555555552 4444444444444444444443333 345555555555543
Q ss_pred CCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccC
Q 024191 122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGS 201 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~ 201 (271)
... .......++||++|.|+.++ .+..++.||+++.|+.++.+..+
T Consensus 167 g~~------------~~~~~~~viIgDnv~IGa~s----------------------~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 167 GVL------------EPLQANPVIIEDNCFIGARS----------------------EVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred CCc------------cccCcCCeEEcCCCEECCCC----------------------EEcCCCEECCCCEEcCCCEEcCC
Confidence 100 00000134555555555444 44455555656665555555566
Q ss_pred cEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191 202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK 236 (271)
Q Consensus 202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~ 236 (271)
+.|.+.+ +++++.. .|++++++.+|+...+
T Consensus 213 t~I~~~~---~g~v~~g--~vp~~svvv~g~~~~~ 242 (272)
T PRK11830 213 TKIYDRE---TGEVHYG--RVPAGSVVVPGSLPSK 242 (272)
T ss_pred eEECcCC---CCcEEee--ecCCCcEEecCccccc
Confidence 6666652 4555543 4788888888877665
No 112
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.45 E-value=1.4e-12 Score=96.28 Aligned_cols=56 Identities=30% Similarity=0.343 Sum_probs=51.3
Q ss_pred eeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchh
Q 024191 197 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 252 (271)
Q Consensus 197 ~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i 252 (271)
....++.||++|+|+.++.+.+++.|++++.+++++.+.+++|+++++.|.||+.+
T Consensus 54 ~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~i~~~~i~~g~pa~~~ 109 (109)
T cd04647 54 VTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPAKVI 109 (109)
T ss_pred cccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEeeECCCCCEEEccccEeC
Confidence 34567999999999999999999999999999999999999999999999999864
No 113
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.45 E-value=3.1e-12 Score=100.60 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=45.6
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcE-EcCCcEEeccCC
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR-LAANSCVFKDIT 239 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~-i~~~s~v~~~~~ 239 (271)
+++.|+++++++.++.+..+++|++++++++++.+.++..++++++ .+.++.+.++++
T Consensus 77 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~ 135 (154)
T cd04650 77 HGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLT 135 (154)
T ss_pred ECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCC
Confidence 3455666666666666677889999999999999999999999999 566677766655
No 114
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.43 E-value=5.7e-13 Score=110.32 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=17.2
Q ss_pred ccCcEECCCcEEccccEECCCCEECC
Q 024191 199 AGSATIGDYVTLGGRVAVRDHVSIAS 224 (271)
Q Consensus 199 ~~~v~Ig~~~~Ig~~~~i~~~~~ig~ 224 (271)
.-++.+||+|.|+++++|.+++.|..
T Consensus 198 veGV~vGdg~VV~aGv~I~~~tki~~ 223 (271)
T COG2171 198 VEGVIVGDGCVVAAGVFITQDTKIYD 223 (271)
T ss_pred EeeeEeCCCcEEecceEEeCCcceEE
Confidence 34566777777777777777776643
No 115
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.41 E-value=6.3e-13 Score=119.28 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=93.8
Q ss_pred eeeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhccc-CCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCC
Q 024191 5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWH-NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGT 83 (271)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~ 83 (271)
..++.|.+ +++|.|+++++++++++..++........+ .....+.....+.+++.|++++.| ++++||++|.|+ +
T Consensus 225 ~~v~~~~~-~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~ 300 (369)
T TIGR02092 225 LNINAYEY-TGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--G 300 (369)
T ss_pred CcEEEEec-CCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--e
Confidence 35788888 899999999999999987666543222222 112223333334466777777777 567777777775 2
Q ss_pred EECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCC
Q 024191 84 VVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (271)
Q Consensus 84 ~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~ 161 (271)
.|. ++.|+++|.|+++|.|.+++|++++.|++++.+. +++||+++.|++++.+...
T Consensus 301 ~v~-~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~---------------------~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 301 KVE-NSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE---------------------NVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred EEe-CCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE---------------------EEEECCCCEECCCCEeCCC
Confidence 344 5678888888888888888898899998888886 7888888888888877543
No 116
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.41 E-value=3.2e-12 Score=108.60 Aligned_cols=37 Identities=22% Similarity=0.566 Sum_probs=27.7
Q ss_pred cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEE
Q 024191 184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 222 (271)
Q Consensus 184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~i 222 (271)
+.||++|+||.++.+ ++.||++|+|+++++|..++.|
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI 287 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence 666666666666666 6788888888888888877776
No 117
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.40 E-value=6.1e-13 Score=120.80 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=84.1
Q ss_pred ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEE-CCC--CEECcCcEECCCcEECCCCEECCCcE
Q 024191 14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLI-EVG--AIVHSKAVLGANVCIGSGTVVGPAVT 90 (271)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I-~~~--~~I~~~~~Ig~~v~Ig~~~~I~~~~~ 90 (271)
.+||.|+++++++++++..++.......+......+...+...+++.+ +.. ..+.++++|+++|.|+ ++.|. +++
T Consensus 256 ~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~sv 333 (407)
T PRK00844 256 RGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSV 333 (407)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCE
Confidence 589999999999999988777543222222222223222222222222 211 1233557777777777 77776 577
Q ss_pred ECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeC
Q 024191 91 IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 160 (271)
Q Consensus 91 Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~ 160 (271)
|+++|.|+++|.|.+++|+++|.|++++.|. +++|++++.|++++++..
T Consensus 334 Ig~~~~I~~~~~i~~sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 334 LSPNVVVESGAEVEDSVLMDGVRIGRGAVVR---------------------RAILDKNVVVPPGATIGV 382 (407)
T ss_pred ECCCCEECCCCEEeeeEECCCCEECCCCEEE---------------------eeEECCCCEECCCCEECC
Confidence 8888888888888888899999999998886 788888888888876653
No 118
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.3e-12 Score=106.90 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=96.1
Q ss_pred ccceeeEEeeccccHHHHHHHHhhhccCCCCCchhhh---hhccc-C--CCcEEccCcEECCCcEECCCCEECcCcEECC
Q 024191 2 AVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQ---FQKWH-N--GGGIFHQSACIDSTVLIEVGAIVHSKAVLGA 75 (271)
Q Consensus 2 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~-~--~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~ 75 (271)
|=+..+|.|.. .++|..+.++...+.+++.++.... ...+. . ..+.|-.+++|++++++.+.++|+||+.||.
T Consensus 233 ag~k~lY~y~t-~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga 311 (407)
T KOG1460|consen 233 AGSKQLYAYET-TDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGA 311 (407)
T ss_pred cCCCceEEEec-ccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecC
Confidence 44567888888 9999999999999999987776432 12222 1 2234777888888899999999999999999
Q ss_pred CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCC
Q 024191 76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123 (271)
Q Consensus 76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~ 123 (271)
+++||+|++|... .|-++++|.+|+.+-+++||..+.||-.+.+...
T Consensus 312 ~vrvg~GvRl~~s-IIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 312 NVRVGPGVRLRES-IILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred CceecCCceeeee-eeccCcEeeccceEEeeeecccccccceeeeccc
Confidence 9999999999854 4558899999999999999999999999988743
No 119
>PRK10502 putative acyl transferase; Provisional
Probab=99.37 E-value=1.1e-11 Score=100.29 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=41.3
Q ss_pred ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191 181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS 232 (271)
Q Consensus 181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s 232 (271)
..++.||++|+|+.++.+.++++||+++.|++++++.++ +++++++++..
T Consensus 122 ~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~P 171 (182)
T PRK10502 122 TAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGNP 171 (182)
T ss_pred cCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECCc
Confidence 366788888888888888999999999999999999985 66777665543
No 120
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.3e-12 Score=117.40 Aligned_cols=86 Identities=35% Similarity=0.504 Sum_probs=71.4
Q ss_pred cCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECC
Q 024191 69 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN 148 (271)
Q Consensus 69 ~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 148 (271)
.+++-++++++...|.++.++.||.++.||.++.|.+|+||.+|.||.+++|. ++.|++
T Consensus 314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~---------------------~S~iw~ 372 (673)
T KOG1461|consen 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIK---------------------NSFIWN 372 (673)
T ss_pred cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEe---------------------eeeeec
Confidence 45777888888888999999999999999999999999999999999999997 999999
Q ss_pred CcEECCccEEeCCCcCCeEECCCcEECCCcEE
Q 024191 149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI 180 (271)
Q Consensus 149 ~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i 180 (271)
+|.|+.||.|. .+.|++++.|++++.+
T Consensus 373 ~v~Igdnc~I~-----~aii~d~v~i~~~~~l 399 (673)
T KOG1461|consen 373 NVTIGDNCRID-----HAIICDDVKIGEGAIL 399 (673)
T ss_pred CcEECCCceEe-----eeEeecCcEeCCCccc
Confidence 99999999885 3455554444444443
No 121
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.36 E-value=9.9e-12 Score=105.63 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=82.8
Q ss_pred ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeE-ECCCcE---ECCCcEE
Q 024191 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV-IGDHSK---IDNLVQI 180 (271)
Q Consensus 105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~-ig~~~~---i~~~~~i 180 (271)
+-+|.+++.|++.+.|.. .+.||+++.|.+++.|.. ++. +|+.++ +..+++|
T Consensus 172 dyVvp~gVrI~~sa~Vr~--------------------gA~LGeGT~IM~~a~Vn~----nAgtiG~~~IEgrInsGavI 227 (341)
T TIGR03536 172 DYVVPKGVRIADTARVRL--------------------GAYVGEGTTVMHEGFINF----NAGTEGPSMVEGRISAGVMV 227 (341)
T ss_pred heEccCCcEEcCCCeEcC--------------------CcEECCCCEEecCCEECc----CcEecCCceEecccccCCEE
Confidence 455666666666666653 666777777777776663 344 777777 7788899
Q ss_pred ccccEECCCCEEcccceeccC----cEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191 181 GHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK 236 (271)
Q Consensus 181 ~~~~~ig~~~~i~~~~~i~~~----v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~ 236 (271)
++++.||+++.| +..+.++ +.||++|+||.++.| ++.||++|+|++|++|..
T Consensus 228 Ghds~IG~gasI--g~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVta 283 (341)
T TIGR03536 228 GKGSDLGGGCST--MGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITA 283 (341)
T ss_pred CCCCEECCCCEE--eEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeC
Confidence 999999999999 5577888 999999999999999 999999999999999863
No 122
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.35 E-value=1.4e-11 Score=100.62 Aligned_cols=57 Identities=26% Similarity=0.393 Sum_probs=46.0
Q ss_pred ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEEeccCC
Q 024191 181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDIT 239 (271)
Q Consensus 181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v~~~~~ 239 (271)
.+++.||++|||+.++.+.++++||++++|+++++|.++ +++++++++ ++.+.+.+.
T Consensus 129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--vp~~~v~~G~PAk~i~~~~ 186 (203)
T PRK09527 129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--IPPNVVAAGVPCRVIREIN 186 (203)
T ss_pred cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCcEEEeeCCEEeccCC
Confidence 467888999999999999999999999999999999986 566776644 444555553
No 123
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.34 E-value=1.5e-11 Score=104.08 Aligned_cols=106 Identities=15% Similarity=0.291 Sum_probs=85.4
Q ss_pred ceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCe-EECCCcEECCCcEEccc
Q 024191 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT-VIGDHSKIDNLVQIGHN 183 (271)
Q Consensus 105 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~-~ig~~~~i~~~~~i~~~ 183 (271)
+-++-+++.|.+...+. ..+.||+++.|.+.+.+.. ++ .||+. ++ ++.|+++
T Consensus 147 ~yvvp~gVRI~~~~rVR--------------------lGAyLGeGtvVm~~a~VN~----nAgtIG~~-iI--~g~I~Hd 199 (319)
T TIGR03535 147 DYVVPTGVRIGDADRVR--------------------LGAHLAEGTTVMHEGFVNF----NAGTLGAS-MV--EGRISAG 199 (319)
T ss_pred eeeCCCccEECCCceee--------------------eccEECCCCEEcCCCEEcc----CceEecCc-eE--EEEEccC
Confidence 44556677777666665 3777788888887777774 46 68885 66 4889999
Q ss_pred cEECCCCEEcccce----eccC----cEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCC
Q 024191 184 VAIGKSCMLCGQVG----IAGS----ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT 239 (271)
Q Consensus 184 ~~ig~~~~i~~~~~----i~~~----v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~ 239 (271)
+.||+++.|++++. +.++ +.||++|+||+++.| +..||++|+|++|++|.+..+
T Consensus 200 vvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 200 VVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTK 261 (319)
T ss_pred CEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeE
Confidence 99999999999998 4447 999999999999999 899999999999999987543
No 124
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.34 E-value=2.5e-12 Score=115.03 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=89.2
Q ss_pred eeEEeeccccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEc-cCcEECCCcEECCCCEECcCcEECCCcEECCCCE
Q 024191 6 FVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFH-QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV 84 (271)
Q Consensus 6 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~ 84 (271)
-++.|.+ +++|.++++++++++++..++..............+. ....+.+.+.|++.+.| ++++|+++|.|+++ .
T Consensus 231 ~v~~~~~-~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~ 307 (361)
T TIGR02091 231 SVQAYLF-SGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-T 307 (361)
T ss_pred ceEEEee-CCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-E
Confidence 5788888 7999999999999999877665432211222112221 22344555666666655 45667777777665 5
Q ss_pred ECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEE
Q 024191 85 VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158 (271)
Q Consensus 85 I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i 158 (271)
|. ++.|+++|.|+++|.|.+|+|++++.|++++.|. +++||+++.|++++.+
T Consensus 308 v~-~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~---------------------~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 308 VS-HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR---------------------NAIIDKNVRIGEGVVI 359 (361)
T ss_pred EE-ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe---------------------eeEECCCCEECCCCEe
Confidence 54 6678888888888888888888888988888885 7888888888877755
No 125
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.33 E-value=3.9e-11 Score=97.83 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=84.1
Q ss_pred cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeE---ECCCcEEC--CCc
Q 024191 104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV---IGDHSKID--NLV 178 (271)
Q Consensus 104 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~---ig~~~~i~--~~~ 178 (271)
....||+++.|++++.|.... .+.||++|.|+.++.|.....+... .-.+..+. ...
T Consensus 64 ~~i~IG~~v~Ig~~v~I~~~~------------------~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~ 125 (192)
T PRK09677 64 GKLFFGDNVQVNDYVHIACIE------------------SITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRT 125 (192)
T ss_pred CeEEECCCCEECCCcEEccCc------------------eEEECCCCEECCCeEEECCCCccccccccccccccChhhcc
Confidence 478999999999999997322 7899999999999988753211000 00000011 011
Q ss_pred EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEE-cCCcEEeccCCCC
Q 024191 179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP 241 (271)
Q Consensus 179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i-~~~s~v~~~~~~~ 241 (271)
....++.|+++++++.++.+.++++||++|+|+++++|.++ +++++++ |.++.+.|...+.
T Consensus 126 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~~ 187 (192)
T PRK09677 126 LESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNHE 187 (192)
T ss_pred cccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCcc
Confidence 12367899999999999999999999999999999999985 6667666 4455566666543
No 126
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.32 E-value=3.2e-11 Score=87.83 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=70.9
Q ss_pred CcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEcc
Q 024191 52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 131 (271)
Q Consensus 52 ~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~ 131 (271)
.+++++++.|++++.|.++++|++++.|++++.|.+++.||++|.|+. .|.++.|++++.+.+++.|+
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg---------- 78 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG---------- 78 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe----------
Confidence 466777778888888877888888888888888888888888888875 56889999999999999986
Q ss_pred CCceecCCceeceEECCCcEECCccEEe
Q 024191 132 HGNMLKKPQLLNARIGNHVEIGANSCID 159 (271)
Q Consensus 132 ~~~~~~~~~~~~~~Ig~~~~I~~~~~i~ 159 (271)
+++||+++.|++++...
T Consensus 79 -----------~siIg~~v~ig~~~~~~ 95 (101)
T cd05635 79 -----------HSYLGSWCNLGAGTNNS 95 (101)
T ss_pred -----------eeEECCCCEECCCceec
Confidence 89999999999998664
No 127
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.32 E-value=3.2e-11 Score=97.28 Aligned_cols=52 Identities=27% Similarity=0.471 Sum_probs=43.3
Q ss_pred EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc
Q 024191 179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS 232 (271)
Q Consensus 179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s 232 (271)
.+.+++.||++|||+.++.+.++++||++++|+++++|.++ +++++++++..
T Consensus 125 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~P 176 (183)
T PRK10092 125 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNP 176 (183)
T ss_pred eecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEecC
Confidence 34567888888888888999999999999999999999986 57787776543
No 128
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.32 E-value=2.3e-11 Score=97.21 Aligned_cols=51 Identities=29% Similarity=0.416 Sum_probs=43.2
Q ss_pred EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191 179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 231 (271)
Q Consensus 179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~ 231 (271)
...+++.||++|+|+.++.+.++++||++|+||++++|.++ +++++++.+.
T Consensus 114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~ 164 (169)
T cd03357 114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGN 164 (169)
T ss_pred eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEcc
Confidence 34577888889999999999999999999999999999985 6777776554
No 129
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.30 E-value=3.1e-11 Score=84.39 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=58.7
Q ss_pred ECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCc
Q 024191 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN 134 (271)
Q Consensus 55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~ 134 (271)
|++++.|++++.|. ++.|++++.|++++.|.+ +.|++++.|++++.+.+++|++++.|++++.+.
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~-s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~------------- 66 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITN-CVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK------------- 66 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeC-cEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-------------
Confidence 34556666666664 467777777777777764 667788888888888888888888888888886
Q ss_pred eecCCceeceEECCCcEECCcc
Q 024191 135 MLKKPQLLNARIGNHVEIGANS 156 (271)
Q Consensus 135 ~~~~~~~~~~~Ig~~~~I~~~~ 156 (271)
++++|+++.|++++
T Consensus 67 --------~~ii~~~~~i~~~~ 80 (81)
T cd04652 67 --------DCLVGSGYRVEAGT 80 (81)
T ss_pred --------cCEECCCcEeCCCC
Confidence 77777777777654
No 130
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.30 E-value=7.3e-11 Score=88.57 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCcee
Q 024191 57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNML 136 (271)
Q Consensus 57 ~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~ 136 (271)
+++.|++++.|+++++|++++.|++++.|.+++.|+++|.|++++.+.+..+.. ..+...+.+.
T Consensus 3 ~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~-~~~~~~~~~~--------------- 66 (119)
T cd03358 3 DNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR-SKIYRKWELK--------------- 66 (119)
T ss_pred CCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc-cccccccccC---------------
Confidence 344444444444444444555555555554445555555555544443322211 2222233333
Q ss_pred cCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcc
Q 024191 137 KKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH 182 (271)
Q Consensus 137 ~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~ 182 (271)
.++||+++.|+.++.+.. ++.|++++.++.++.+.+
T Consensus 67 ------~~~Ig~~~~Ig~~~~v~~----~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 67 ------GTTVKRGASIGANATILP----GVTIGEYALVGAGAVVTK 102 (119)
T ss_pred ------CcEECCCcEECcCCEEeC----CcEECCCCEEccCCEEeC
Confidence 777888888888777763 466777777776666644
No 131
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.30 E-value=3.8e-11 Score=83.74 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=47.1
Q ss_pred CCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 56 ~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
++++.|++++.|+++++|++++.|+++|.|. ++.+++++.|++++.+.++++++++.+++++.+.
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~ 67 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLE 67 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEe
Confidence 4556666666666667777777777777776 4556777888888877778888888888777775
No 132
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.29 E-value=6.3e-11 Score=100.57 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=38.9
Q ss_pred ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC-CcEE
Q 024191 183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCV 234 (271)
Q Consensus 183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~-~s~v 234 (271)
+..||++|+|+.++.|.++++||+++.||++++|.++ +++++++.+ ++.+
T Consensus 193 ~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~d--Vp~~~~v~G~PArv 243 (273)
T PRK11132 193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAGVPARI 243 (273)
T ss_pred CCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCcEE
Confidence 3567777777777778889999999999999999986 667777654 3343
No 133
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.28 E-value=5.1e-11 Score=100.84 Aligned_cols=38 Identities=21% Similarity=0.523 Sum_probs=33.1
Q ss_pred cEECCCCEEcccceeccCcEECCCcEEccccEECCCCEEC
Q 024191 184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 223 (271)
Q Consensus 184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig 223 (271)
+.||++|+||.++.| ++.||++|.||++++|.+++.+-
T Consensus 226 V~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v~ 263 (319)
T TIGR03535 226 ISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKVT 263 (319)
T ss_pred EEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEEE
Confidence 778888888888887 79999999999999999999873
No 134
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.27 E-value=1.2e-11 Score=113.02 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=87.3
Q ss_pred eeEEeecc----------ccHHHHHHHHhhhccCCCCCchhhhhhcccCCCcEEccCcEECCCcEE---CCCCE-ECcCc
Q 024191 6 FVHYYRLT----------KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLI---EVGAI-VHSKA 71 (271)
Q Consensus 6 ~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I---~~~~~-I~~~~ 71 (271)
.++.|.+. ++||.|+++++.+++++..++.......+......+.......+++.+ +.++. +..++
T Consensus 249 ~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s 328 (425)
T PRK00725 249 KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINS 328 (425)
T ss_pred cEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeC
Confidence 36677663 269999999999999987776433222222222223332222233322 22221 22367
Q ss_pred EECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcE
Q 024191 72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVE 151 (271)
Q Consensus 72 ~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 151 (271)
+|+++|.| ++|.|. +++|+++|.|+++|.|.+|+|+++|.|++++.|. +++|++++.
T Consensus 329 ~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~---------------------~~ii~~~~~ 385 (425)
T PRK00725 329 LVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR---------------------RCVIDRGCV 385 (425)
T ss_pred EEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEe---------------------eEEECCCCE
Confidence 88888888 678876 5778888888888888888888888888888886 788888887
Q ss_pred ECCccEEe
Q 024191 152 IGANSCID 159 (271)
Q Consensus 152 I~~~~~i~ 159 (271)
|++++++.
T Consensus 386 i~~~~~i~ 393 (425)
T PRK00725 386 IPEGMVIG 393 (425)
T ss_pred ECCCCEEC
Confidence 77776554
No 135
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.26 E-value=8.2e-11 Score=82.06 Aligned_cols=66 Identities=23% Similarity=0.464 Sum_probs=51.0
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEE
Q 024191 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 152 (271)
Q Consensus 73 Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 152 (271)
|++++.|++++.|++++.|+++|.|++++.|.++.|++++.|++++.|. ++++++++.+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~---------------------~sii~~~~~v 60 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVK---------------------SSIVGWNSTV 60 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEe---------------------CCEEeCCCEE
Confidence 3455566666666666667777777778888889999999999999986 7888888888
Q ss_pred CCccEEe
Q 024191 153 GANSCID 159 (271)
Q Consensus 153 ~~~~~i~ 159 (271)
++++.+.
T Consensus 61 ~~~~~~~ 67 (80)
T cd05824 61 GRWTRLE 67 (80)
T ss_pred CCCcEEe
Confidence 8887775
No 136
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.25 E-value=8.7e-11 Score=81.64 Aligned_cols=65 Identities=31% Similarity=0.525 Sum_probs=41.5
Q ss_pred ECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
|++++.|++++.|.+ +.|++++.|++++.|. ++.|++++.|++++.+.+++|++++.|++++.+.
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~ 66 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVV 66 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEECCEECCCCEECCCCEEc
Confidence 344555555555554 6666666666666665 3456666777777777667777777777766665
No 137
>PLN02739 serine acetyltransferase
Probab=99.24 E-value=2.6e-10 Score=98.82 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=41.2
Q ss_pred cccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEc-CCcEEeccC
Q 024191 182 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDI 238 (271)
Q Consensus 182 ~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~-~~s~v~~~~ 238 (271)
+++.||++|+|++++.|.++++||+++.||++++|.++ +++++++. -++.+.+..
T Consensus 256 r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAriI~~~ 311 (355)
T PLN02739 256 RHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKLIGFV 311 (355)
T ss_pred CCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEEeccC
Confidence 34567777777777778889999999999999999986 55666664 455555444
No 138
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=1.2e-10 Score=80.89 Aligned_cols=65 Identities=28% Similarity=0.472 Sum_probs=48.7
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEE
Q 024191 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 152 (271)
Q Consensus 73 Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 152 (271)
|++++.|++++.|.+ +.|+++|.|++++.+.++.|++++.|++++.|. ++++++++.|
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~---------------------~svv~~~~~i 59 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIV---------------------DSIIGDNAVI 59 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEE---------------------CCEECCCCEE
Confidence 556666666666665 667777778878778788888888888888885 6777777777
Q ss_pred CCccEEe
Q 024191 153 GANSCID 159 (271)
Q Consensus 153 ~~~~~i~ 159 (271)
++++.+.
T Consensus 60 ~~~~~i~ 66 (79)
T cd03356 60 GENVRVV 66 (79)
T ss_pred CCCCEEc
Confidence 7776664
No 139
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.22 E-value=1.5e-10 Score=80.94 Aligned_cols=77 Identities=30% Similarity=0.571 Sum_probs=53.6
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEE
Q 024191 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 152 (271)
Q Consensus 73 Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 152 (271)
|++++.|++++.|. ++.|++++.|++++.|.+++|++++.|++++.|. ++++++++.|
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~---------------------~svi~~~~~i 59 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLE---------------------NCIIGNGAVI 59 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEe---------------------ccEEeCCCEE
Confidence 45566666666665 4667777777777777778888888888888885 7788888888
Q ss_pred CCccEEeCCCcCCeEECCCcEECC
Q 024191 153 GANSCIDRGSWRDTVIGDHSKIDN 176 (271)
Q Consensus 153 ~~~~~i~~~~~~~~~ig~~~~i~~ 176 (271)
++++.+. ++.+++++.+++
T Consensus 60 ~~~~~v~-----~~ii~~~~~i~~ 78 (81)
T cd04652 60 GEKCKLK-----DCLVGSGYRVEA 78 (81)
T ss_pred CCCCEEc-----cCEECCCcEeCC
Confidence 8777663 344444444443
No 140
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.22 E-value=1.4e-10 Score=80.44 Aligned_cols=65 Identities=25% Similarity=0.389 Sum_probs=40.8
Q ss_pred ECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
|+++++|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.|.++.|++++.|++++.+.
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 66 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP 66 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence 34555555555554 45666666666666665 4556666666666666666666666666666665
No 141
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.20 E-value=3.1e-10 Score=83.67 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=42.2
Q ss_pred EEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 179 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 179 ~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
.+..++.||++|+++.++.+.++++||++|.|+++++|.++ +++++++.+
T Consensus 52 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~G 101 (107)
T cd05825 52 LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAG 101 (107)
T ss_pred eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc--CCCCCEEEC
Confidence 34577899999999999999999999999999999999885 456666654
No 142
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.20 E-value=3e-10 Score=90.01 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=55.7
Q ss_pred cCcEECCCcEECCCCEECc--CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeE
Q 024191 51 QSACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 128 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~I~~--~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~ 128 (271)
.++.|.++++|++++.|.. +++|++++.||++|.|.+++.|+... .. .....++||++|.|++++.|..
T Consensus 60 ~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~-~~--~~~~~~~Ig~~v~Ig~~a~I~~------ 130 (162)
T TIGR01172 60 TGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTG-KE--KGKRHPTVGEGVMIGAGAKVLG------ 130 (162)
T ss_pred eCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCc-cc--cCCcCCEECCCcEEcCCCEEEC------
Confidence 3444555555555555543 24555555555555555555554321 11 1134578999999999998873
Q ss_pred EccCCceecCCceeceEECCCcEECCccEEeCC
Q 024191 129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (271)
Q Consensus 129 ~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~ 161 (271)
.+.||+++.|++++.+...
T Consensus 131 --------------~v~IG~~~~Iga~s~V~~d 149 (162)
T TIGR01172 131 --------------NIEVGENAKIGANSVVLKD 149 (162)
T ss_pred --------------CcEECCCCEECCCCEECCC
Confidence 7899999999999999853
No 143
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.18 E-value=2.2e-10 Score=79.45 Aligned_cols=65 Identities=31% Similarity=0.515 Sum_probs=42.7
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEE
Q 024191 73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 152 (271)
Q Consensus 73 Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 152 (271)
|++++.|++++.|. ++.|++++.|++++.|.++.|++++.|++++.|. +++|++++.|
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~---------------------~~~i~~~~~i 59 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH---------------------HSIVADGAVI 59 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe---------------------CcEEcCCCEE
Confidence 45566666666665 4566777777777777777777777777777775 5666666666
Q ss_pred CCccEEe
Q 024191 153 GANSCID 159 (271)
Q Consensus 153 ~~~~~i~ 159 (271)
++++.+.
T Consensus 60 ~~~~~i~ 66 (79)
T cd05787 60 GKGCTIP 66 (79)
T ss_pred CCCCEEC
Confidence 6555443
No 144
>PLN02694 serine O-acetyltransferase
Probab=99.18 E-value=3.3e-10 Score=96.36 Aligned_cols=84 Identities=29% Similarity=0.399 Sum_probs=51.3
Q ss_pred cEECCCcEECCCCEECc--CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEc
Q 024191 53 ACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD 130 (271)
Q Consensus 53 ~~i~~~~~I~~~~~I~~--~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~ 130 (271)
+.|++.+.||+++.|.. +++||+++.||++|.|..++++|.. +..+..++++||++|.|++++.|..
T Consensus 161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilg-------- 229 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILG-------- 229 (294)
T ss_pred EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECC--------
Confidence 34555555555555543 4566666666666665555555432 2333445677888888888877752
Q ss_pred cCCceecCCceeceEECCCcEECCccEEe
Q 024191 131 EHGNMLKKPQLLNARIGNHVEIGANSCID 159 (271)
Q Consensus 131 ~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~ 159 (271)
++.||+++.|++++++.
T Consensus 230 ------------gi~IGd~a~IGAgSVV~ 246 (294)
T PLN02694 230 ------------NVKIGEGAKIGAGSVVL 246 (294)
T ss_pred ------------CCEECCCCEECCCCEEC
Confidence 67777777777777665
No 145
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.15 E-value=4.3e-10 Score=82.45 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=59.8
Q ss_pred cEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecC
Q 024191 59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138 (271)
Q Consensus 59 ~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 138 (271)
+.|++++.|. ++.||+++.|+ ++.|. ++.|++++.|++++.|.++.|++++.|++++.+.
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~----------------- 61 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR----------------- 61 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-----------------
Confidence 4566666663 56777777777 77776 5667788888888888888888888888888885
Q ss_pred CceeceEECCCcEECCccEEeCC
Q 024191 139 PQLLNARIGNHVEIGANSCIDRG 161 (271)
Q Consensus 139 ~~~~~~~Ig~~~~I~~~~~i~~~ 161 (271)
+++||+++.|++++.+...
T Consensus 62 ----~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 62 ----RAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred ----eEEECCCCEECCCCEECCC
Confidence 7888888888888777643
No 146
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.13 E-value=1e-09 Score=98.87 Aligned_cols=132 Identities=24% Similarity=0.310 Sum_probs=92.0
Q ss_pred EEeeccccHHHHHHHHhhhccCCCCC--ch---hhhhhcccCCCcEEccCcEECCCcEECCCCEECc---CcEECCCcEE
Q 024191 8 HYYRLTKTYKQDFGRFCNLFSTKSDI--ES---RQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHS---KAVLGANVCI 79 (271)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~v~I 79 (271)
+++++ ..++..+.....++...... .. ...........+.|++++.+ .++.|+++|.|++ +++|+++|.|
T Consensus 240 ~w~di-gt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I 317 (380)
T PRK05293 240 YWKDV-GTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQV 317 (380)
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEE
Confidence 45666 55555555444555433221 11 01111223345667777777 4567888888763 5789999999
Q ss_pred CCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEE
Q 024191 80 GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158 (271)
Q Consensus 80 g~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i 158 (271)
+++|.|. +++|++++.|+++|.|.+++|++++.|++++.+..... ...+||+++.+...++|
T Consensus 318 ~~~~~i~-~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~----------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 318 GEGSVVK-DSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKE----------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred CCCCEEE-CCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCc----------------eeEEEeCCCCCCCCcEe
Confidence 9999997 66789999999999999999999999999999975331 13889999988887765
No 147
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.6e-09 Score=96.55 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred EEeeccccHHHHHHHHhhhccCCCCC-chhhhhh-cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEE
Q 024191 8 HYYRLTKTYKQDFGRFCNLFSTKSDI-ESRQQFQ-KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV 85 (271)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I 85 (271)
+|+.. ..+|........++...... ....... ..... +.+..++++++++.|++++.|+++++||++|.|++++.|
T Consensus 217 ~W~di-g~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i 294 (358)
T COG1208 217 YWLDI-GTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI 294 (358)
T ss_pred eEEeC-CCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEE
Confidence 56677 77777766666666433222 1111100 00333 667778888888888888888888888888888888888
Q ss_pred CCCcEECCCCEECCccEEcceEECCCcEECC
Q 024191 86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHN 116 (271)
Q Consensus 86 ~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~ 116 (271)
. ++.|.++|.|++++.|.+|+|+++|.|++
T Consensus 295 ~-~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 295 K-NSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred E-eeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 7 45577889999999999999999998888
No 148
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.12 E-value=6.9e-10 Score=101.72 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=28.3
Q ss_pred EECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCc-EEe
Q 024191 185 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANS-CVF 235 (271)
Q Consensus 185 ~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s-~v~ 235 (271)
.|++++.+. ++.+..++.||+++.|+...-+.+..++|+++.++++. ++.
T Consensus 375 ~Ig~~~~i~-~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 425 (436)
T PLN02241 375 GIGENTKIR-NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVIL 425 (436)
T ss_pred EECCCCEEc-ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEc
Confidence 344444443 34445555566666666555556666666677777763 443
No 149
>PRK10191 putative acyl transferase; Provisional
Probab=99.10 E-value=1.5e-09 Score=84.16 Aligned_cols=87 Identities=26% Similarity=0.318 Sum_probs=52.2
Q ss_pred cEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCce
Q 024191 47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG 126 (271)
Q Consensus 47 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~ 126 (271)
..|.+++.+++++.|+++ .++.|++++.||++|.|+.++.||+..... ...+.||+++.|++++.+..
T Consensus 42 ~~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~----~~~~~IGd~~~Ig~~~~I~~---- 109 (146)
T PRK10191 42 YEIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGADN----MACPHIGNGVELGANVIILG---- 109 (146)
T ss_pred cccCCCCEECCCeEECCC----CeEEECCCcEECCCCEECCCCEECCCCcCC----CCCCEECCCcEEcCCCEEeC----
Confidence 335555566666555553 134555555555555554444444332111 13457888888888888863
Q ss_pred eEEccCCceecCCceeceEECCCcEECCccEEeCC
Q 024191 127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (271)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~ 161 (271)
++.||+++.|++++.+...
T Consensus 110 ----------------~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 110 ----------------DITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred ----------------CCEECCCCEECCCCEECCc
Confidence 7888888888888888743
No 150
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.10 E-value=3e-10 Score=84.93 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=12.2
Q ss_pred eceEECCCcEECCccEEeC
Q 024191 142 LNARIGNHVEIGANSCIDR 160 (271)
Q Consensus 142 ~~~~Ig~~~~I~~~~~i~~ 160 (271)
.+.-||++++|++.+++.+
T Consensus 83 fp~hiGdhVFieE~cVVnA 101 (184)
T KOG3121|consen 83 FPVHIGDHVFIEEECVVNA 101 (184)
T ss_pred eeeeecceEEEecceEeeh
Confidence 3666777777776666653
No 151
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.08 E-value=1.8e-09 Score=78.68 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=63.0
Q ss_pred cccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEEC---CCcEECCCCEECCccEEcceEECCCcEECCC
Q 024191 41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSNCIIGDSCIIHNG 117 (271)
Q Consensus 41 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~---~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~ 117 (271)
.++...+.|.+++.+.+++.|++++.|++++.|.+++.||++|.|+ +++.|.+++.+++++.|.+++|++++.|+++
T Consensus 12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~ 91 (101)
T cd05635 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAG 91 (101)
T ss_pred EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEEeeeEECCCCEECCC
Confidence 4555666777777777777777777777777777777777777776 5677778888888888888999999999988
Q ss_pred CEEC
Q 024191 118 VCIG 121 (271)
Q Consensus 118 ~~i~ 121 (271)
+...
T Consensus 92 ~~~~ 95 (101)
T cd05635 92 TNNS 95 (101)
T ss_pred ceec
Confidence 8765
No 152
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.07 E-value=3.2e-09 Score=77.39 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=37.3
Q ss_pred ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
..++.|+++++++.++.+..+++|+++++|+++++|.++ ++++++..+
T Consensus 52 ~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~~G 99 (101)
T cd03354 52 KRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD--VPANSTVVG 99 (101)
T ss_pred CCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc--cCCCCEEEe
Confidence 356677777777777777888999999999999999875 666666553
No 153
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.07 E-value=1.7e-09 Score=79.31 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=52.9
Q ss_pred cEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCcc
Q 024191 77 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156 (271)
Q Consensus 77 v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~ 156 (271)
+.|++++.|. ++.||++|.|+ ++.|.++.|++++.|++++.|. +++|++++.|+.++
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~---------------------~siI~~~~~Ig~~~ 58 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVE---------------------DSVIMPNVGIGRNA 58 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEE---------------------EeEEcCCCEECCCC
Confidence 4556666664 46677777777 7777888888888888888886 78888888888777
Q ss_pred EEeCCCcCCeEECCCcEECCCcEE
Q 024191 157 CIDRGSWRDTVIGDHSKIDNLVQI 180 (271)
Q Consensus 157 ~i~~~~~~~~~ig~~~~i~~~~~i 180 (271)
.+. ++.|++++.+++++.+
T Consensus 59 ~i~-----~siig~~~~Ig~~~~v 77 (104)
T cd04651 59 VIR-----RAIIDKNVVIPDGVVI 77 (104)
T ss_pred EEE-----eEEECCCCEECCCCEE
Confidence 763 3455554444444444
No 154
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.06 E-value=1.2e-09 Score=75.25 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=30.3
Q ss_pred cCcEECCCcEEccccEECCCCEECCCcEEcCCcEE
Q 024191 200 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV 234 (271)
Q Consensus 200 ~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v 234 (271)
.++.||++++++.++++.++++|++++.|++++.+
T Consensus 43 ~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 43 NPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred CCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 34889999999999999889999999999988876
No 155
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.04 E-value=2.1e-09 Score=74.06 Aligned_cols=32 Identities=41% Similarity=0.670 Sum_probs=14.9
Q ss_pred ECCCcEECCCCEECcCcEECCCcEECCCCEEC
Q 024191 55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 86 (271)
Q Consensus 55 i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~ 86 (271)
|++++.|+++++|.+++.||+++.|++++.|.
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~ 34 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIG 34 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEE
Confidence 34444444444444444444444444444444
No 156
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.4e-10 Score=96.00 Aligned_cols=83 Identities=29% Similarity=0.511 Sum_probs=62.6
Q ss_pred ECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEE
Q 024191 67 VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARI 146 (271)
Q Consensus 67 I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I 146 (271)
++..+.+++++.|++++.|. .++||.+|.||+.+.|.+|.|.++++|++++.|. +++|
T Consensus 331 ~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ie---------------------nsII 388 (433)
T KOG1462|consen 331 VGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIE---------------------NSII 388 (433)
T ss_pred cchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCccee---------------------ccee
Confidence 33445555666666666665 4568888888999999999999999999999997 8899
Q ss_pred CCCcEECCccEEeCCCcCCeEECCCcEECC
Q 024191 147 GNHVEIGANSCIDRGSWRDTVIGDHSKIDN 176 (271)
Q Consensus 147 g~~~~I~~~~~i~~~~~~~~~ig~~~~i~~ 176 (271)
|.+++|+.++.+. +|.||.+-.+++
T Consensus 389 g~gA~Ig~gs~L~-----nC~Ig~~yvVea 413 (433)
T KOG1462|consen 389 GMGAQIGSGSKLK-----NCIIGPGYVVEA 413 (433)
T ss_pred cccceecCCCeee-----eeEecCCcEEcc
Confidence 9999999888873 566666655554
No 157
>PLN02357 serine acetyltransferase
Probab=98.99 E-value=3.2e-09 Score=92.83 Aligned_cols=86 Identities=28% Similarity=0.431 Sum_probs=56.4
Q ss_pred cEECCCcEECCCCEECc--CcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEc
Q 024191 53 ACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD 130 (271)
Q Consensus 53 ~~i~~~~~I~~~~~I~~--~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~ 130 (271)
+.|++++.||+++.|.. +++||+++.||++|.|..+++||.. +.......++||++|.|++++.|..
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~Ilg-------- 295 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILG-------- 295 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEEC--------
Confidence 44555555555555543 4566666666666666666666442 1111134678999999999988852
Q ss_pred cCCceecCCceeceEECCCcEECCccEEeCC
Q 024191 131 EHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161 (271)
Q Consensus 131 ~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~ 161 (271)
++.||+++.|++++++...
T Consensus 296 ------------gV~IGdga~IGAgSVV~~d 314 (360)
T PLN02357 296 ------------NITIGEGAKIGAGSVVLKD 314 (360)
T ss_pred ------------CeEECCCCEECCCCEECcc
Confidence 8899999999999988854
No 158
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.98 E-value=8.3e-09 Score=80.18 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=43.1
Q ss_pred EccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC
Q 024191 180 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 231 (271)
Q Consensus 180 i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~ 231 (271)
...++.||++|+|+.++.+..+++||++|+|+++++|.++ +++++++++.
T Consensus 70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~ 119 (145)
T cd03349 70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGN 119 (145)
T ss_pred ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEec
Confidence 3467899999999999999999999999999999999986 6788777654
No 159
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.98 E-value=9.2e-09 Score=75.75 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=37.2
Q ss_pred EccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcC
Q 024191 180 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 230 (271)
Q Consensus 180 i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~ 230 (271)
...++.|+++++++.++.+..++.|+++++++.++.|.+ .+++++++++
T Consensus 55 ~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~g 103 (109)
T cd04647 55 TSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVAG 103 (109)
T ss_pred ccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEee--ECCCCCEEEc
Confidence 346677777777777777778888899999998888884 5667776644
No 160
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.98 E-value=5.3e-09 Score=93.35 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=24.0
Q ss_pred cEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 71 ~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
+.+.+.+.|+++|.| .++.|.+.+.|+++|.|.+++|++++.|+++|.|+
T Consensus 249 ~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~ 298 (353)
T TIGR01208 249 SKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR 298 (353)
T ss_pred CEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEe
Confidence 334444444444444 33344444455555555455555555555555553
No 161
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.98 E-value=6.1e-09 Score=82.79 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=44.5
Q ss_pred ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe
Q 024191 181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF 235 (271)
Q Consensus 181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~ 235 (271)
..+-+||+++.|++++.+.+++.|||++.||++++|.+++.- +-++++-++.+.
T Consensus 117 ~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~-~~tvvGvPArii 170 (194)
T COG1045 117 KRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPP-NATVVGVPARVI 170 (194)
T ss_pred CCCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCC-CceEecCcceEe
Confidence 356788888889999999999999999999999999998775 555666666554
No 162
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.94 E-value=3.7e-09 Score=79.79 Aligned_cols=169 Identities=16% Similarity=0.179 Sum_probs=85.6
Q ss_pred cEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecC
Q 024191 59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138 (271)
Q Consensus 59 ~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 138 (271)
++|.+.+++-..+.|.+++.|+++|++.+.+++-.. - ...+||+++.|.+.+.|...- ..+-.+...
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~--a------GPI~iGEnniiEEyA~i~n~~-----~~~~~~d~~ 75 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIAT--A------GPIYIGENNIIEEYAVIRNRL-----EPGAVWDSD 75 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcc--c------CCEEEccCchhhhHHHHHhhc-----CCCCccCCC
Confidence 455555555445566667777777777766544211 1 235677777777766664210 000011110
Q ss_pred CceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECC
Q 024191 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 218 (271)
Q Consensus 139 ~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~ 218 (271)
....+||.+..+.-+| .. .-..+|+..+++..+.++.++.+-++|.||+.+.+..
T Consensus 76 --~~pmiIGt~NvFeVgc----------------------~s-~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 76 --GQPMIIGTWNVFEVGC----------------------KS-SAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred --CCeEEEeccceEEeec----------------------hh-hhhhhcCcceEeeeeEecCCcEEcCCceeccceEEec
Confidence 0134444444433333 22 2234444455555555555666666666777777766
Q ss_pred CCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHHHhhccccc
Q 024191 219 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSKK 268 (271)
Q Consensus 219 ~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~~~~r~~~~ 268 (271)
.-.++.++.+-+..-+.+.-...- +.....+..+++-+.+..+|.|+
T Consensus 131 ~q~lpent~vYga~~L~R~~~~~~---~~qtlQidFLrKiLPnYHHL~k~ 177 (190)
T KOG4042|consen 131 HQNLPENTSVYGATNLSRTTKTPN---MTQTLQIDFLRKILPNYHHLYKK 177 (190)
T ss_pred ccccCCcceEEccccccceecCCC---CCccchHHHHHHHccchhhhhcc
Confidence 667777776666555543221000 11123355566766666666655
No 163
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.90 E-value=2.7e-08 Score=90.51 Aligned_cols=111 Identities=23% Similarity=0.350 Sum_probs=80.6
Q ss_pred EEeeccccHHHHHHHHhhhccCCCC--Cchhh----------hhhcccCCC--cEEccCcEECCCcEECCCCEECcCcEE
Q 024191 8 HYYRLTKTYKQDFGRFCNLFSTKSD--IESRQ----------QFQKWHNGG--GIFHQSACIDSTVLIEVGAIVHSKAVL 73 (271)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~--~~i~~~~~i~~~~~I~~~~~I~~~~~I 73 (271)
+++++ ..+|..+....++|+.... +.... +........ ..+.+++.|++++.|+ ++.|. +++|
T Consensus 258 ~w~Di-gt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svI 334 (407)
T PRK00844 258 YWRDV-GTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVL 334 (407)
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEE
Confidence 35677 8888888877777754322 11100 001111111 1134567788888887 78886 5899
Q ss_pred CCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECC
Q 024191 74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 122 (271)
Q Consensus 74 g~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~ 122 (271)
+++|.|+++|.|. +++|+++|.|+++|.|.+++|++++.|+++++++.
T Consensus 335 g~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 335 SPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred CCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 9999999999998 56799999999999999999999999999999975
No 164
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.87 E-value=2.9e-08 Score=80.65 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=44.8
Q ss_pred EccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCC-cEEec
Q 024191 180 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFK 236 (271)
Q Consensus 180 i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~-s~v~~ 236 (271)
...++.||+++||+.++.+.++++||++++||+++++.+ -+++++++++. +.+.|
T Consensus 121 ~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk--dvp~~~iv~G~Pa~vir 176 (190)
T COG0110 121 GAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK--DVPPYGIVAGNPARVIR 176 (190)
T ss_pred ecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC--ccCCCeEEeCCcceEEE
Confidence 346799999999999999999999999999999999999 45566666554 33543
No 165
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.81 E-value=2.5e-08 Score=82.96 Aligned_cols=112 Identities=25% Similarity=0.369 Sum_probs=61.3
Q ss_pred CcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCc
Q 024191 46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF 125 (271)
Q Consensus 46 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~ 125 (271)
+.+|.|++.++..+.|++++++.+.++|.=++.++++|+|...+.+|.. .+||++|+|+.++.|+
T Consensus 108 g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~-----------a~VGkn~higgGa~I~---- 172 (271)
T COG2171 108 GVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSC-----------AQVGKNSHIGGGASIG---- 172 (271)
T ss_pred ceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeecc-----------EEECCCcccCCcceEe----
Confidence 3555555555555555555555555555555555555555544444432 4567777777777775
Q ss_pred eeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECCCcEEcccc
Q 024191 126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV 184 (271)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~~~~i~~~~ 184 (271)
.+...++...++||++|.||+++.+.. .+.+|++|.+.+++.|+.++
T Consensus 173 --------GVLep~~a~Pv~IgdncliGAns~~ve----GV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 173 --------GVLEPLQANPVIIGDNCLIGANSEVVE----GVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred --------EEecCCCCCCeEECCccEeccccceEe----eeEeCCCcEEecceEEeCCc
Confidence 233333444777777777777765542 24444444444444443333
No 166
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.79 E-value=7.9e-08 Score=86.03 Aligned_cols=111 Identities=25% Similarity=0.384 Sum_probs=74.9
Q ss_pred EEeeccccHHHHHHHHhhhccCCCCCc--hhh----hhhcccCCCcEEccCcEECCCcEECCCCEECc----CcEECCCc
Q 024191 8 HYYRLTKTYKQDFGRFCNLFSTKSDIE--SRQ----QFQKWHNGGGIFHQSACIDSTVLIEVGAIVHS----KAVLGANV 77 (271)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~----~~~Ig~~v 77 (271)
+++++ ..++..+....++++...... ... .......+++.+++.+.+ +++.|+++|.|++ ++.|+++|
T Consensus 240 ~w~di-gt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~ 317 (361)
T TIGR02091 240 YWRDV-GTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRV 317 (361)
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCCEEEccEECCCC
Confidence 45666 555555555555555432211 100 011223344555665543 4466777777776 78888888
Q ss_pred EECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 78 CIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 78 ~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
.|+++|.|. ++.|++++.|++++.+.+++|++++.|++++.|+
T Consensus 318 ~I~~~~~i~-~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 318 RIGSGSTVE-DSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EECCCCEEe-eeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 998888887 6778899999999999999999999999998875
No 167
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.9e-08 Score=83.51 Aligned_cols=69 Identities=23% Similarity=0.359 Sum_probs=46.4
Q ss_pred cEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCc
Q 024191 71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV 150 (271)
Q Consensus 71 ~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 150 (271)
++|.+.+.+.+.+.|++|+.||.++.||+++.+.+|+|-+++.|.+++.+- +++||-.+
T Consensus 289 VyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl---------------------~sIigw~s 347 (407)
T KOG1460|consen 289 VYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVL---------------------HSIIGWKS 347 (407)
T ss_pred eEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEE---------------------eeeecccc
Confidence 333333444444444444455555566666666778899999999988774 88899888
Q ss_pred EECCccEEeC
Q 024191 151 EIGANSCIDR 160 (271)
Q Consensus 151 ~I~~~~~i~~ 160 (271)
.||.-+.+..
T Consensus 348 ~iGrWaRVe~ 357 (407)
T KOG1460|consen 348 SIGRWARVEG 357 (407)
T ss_pred cccceeeecc
Confidence 8888777754
No 168
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.4e-08 Score=86.73 Aligned_cols=84 Identities=26% Similarity=0.482 Sum_probs=61.8
Q ss_pred CEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCC
Q 024191 83 TVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 162 (271)
Q Consensus 83 ~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~ 162 (271)
..++..+.++++|.|++++.|..|+||.+|.||+.++|. ++++-+++.|++++.|.
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~---------------------nSilm~nV~vg~G~~Ie--- 384 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVA---------------------NSILMDNVVVGDGVNIE--- 384 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEE---------------------eeEeecCcEecCCccee---
Confidence 344455667777777778888888888888888888886 88888888888888884
Q ss_pred cCCeEECCCcEECCCcEEccccEECCCCEEc
Q 024191 163 WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLC 193 (271)
Q Consensus 163 ~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~ 193 (271)
+|.||.+++|+.++.+ .+|.||.+-++.
T Consensus 385 --nsIIg~gA~Ig~gs~L-~nC~Ig~~yvVe 412 (433)
T KOG1462|consen 385 --NSIIGMGAQIGSGSKL-KNCIIGPGYVVE 412 (433)
T ss_pred --cceecccceecCCCee-eeeEecCCcEEc
Confidence 5677777777776666 556666555554
No 169
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.78 E-value=4.8e-08 Score=89.42 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 82 GTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 82 ~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
++.|. ++.|+++|.| +++.|.+|+|+++|.|++++.|.
T Consensus 303 ~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~ 340 (429)
T PRK02862 303 DATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIE 340 (429)
T ss_pred ccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEE
Confidence 45554 4677888877 77778788999999999999886
No 170
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.73 E-value=2.2e-07 Score=84.95 Aligned_cols=70 Identities=29% Similarity=0.519 Sum_probs=60.4
Q ss_pred cCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCC
Q 024191 51 QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123 (271)
Q Consensus 51 ~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~ 123 (271)
.++.|++++.| ++|.|. +++|+++|.|+++|.|. +++|+++|.|+++|.|.+|+|++++.|++++.|+..
T Consensus 326 ~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~-~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 326 INSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVE-DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGED 395 (425)
T ss_pred EeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEe-eeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCC
Confidence 36778888888 677775 68999999999999996 677999999999999999999999999999999743
No 171
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.63 E-value=6.4e-08 Score=82.62 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=67.2
Q ss_pred ccCCCcEEccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEEC
Q 024191 42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 121 (271)
Q Consensus 42 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~ 121 (271)
+++.+.+...+..+.++..|..+ ..+.+-+.+|++|.|+++++||.++.|++++.+.+|.|-.+..++.++.+.
T Consensus 242 ~Yl~s~~~~t~~r~~p~~~i~~n------vlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~ 315 (371)
T KOG1322|consen 242 FYLRSLPKYTSPRLLPGSKIVGN------VLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEIS 315 (371)
T ss_pred HHHhhCcccCCccccCCcccccc------EeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHH
Confidence 33444445555555555544444 444444555566677777777777888888888888888888888888886
Q ss_pred CCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEECCCcEECC
Q 024191 122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN 176 (271)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig~~~~i~~ 176 (271)
.+++|-++.||.++.+. +.++||+++++.+
T Consensus 316 ---------------------s~ivg~~~~IG~~~~id----~~a~lG~nV~V~d 345 (371)
T KOG1322|consen 316 ---------------------SSIVGWNVPIGIWARID----KNAVLGKNVIVAD 345 (371)
T ss_pred ---------------------hhhccccccccCceEEe----cccEeccceEEec
Confidence 67777777777666555 3455555555544
No 172
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.60 E-value=1e-07 Score=71.50 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=42.3
Q ss_pred CeEECCCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcE
Q 024191 165 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 233 (271)
Q Consensus 165 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~ 233 (271)
+..||+++.|+..+.+ ....||..+.+|.++.|+.++++-|-|.|..++++.+.+.+++++.+++...
T Consensus 84 p~hiGdhVFieE~cVV-nAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~ 151 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVV-NAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPA 151 (184)
T ss_pred eeeecceEEEecceEe-ehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCc
Confidence 3445555555555444 3344444444444444555566777777778888888888888888877643
No 173
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.58 E-value=2e-07 Score=75.41 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=41.8
Q ss_pred ccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcE-EcCCcEEec
Q 024191 183 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR-LAANSCVFK 236 (271)
Q Consensus 183 ~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~-i~~~s~v~~ 236 (271)
+-.||++++|+.++.|.+++.||+++.|+++++|.+++. +++. +|.++.+.+
T Consensus 200 hP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP--~~~~AvGnPAklIg 252 (269)
T KOG4750|consen 200 HPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVP--PNTLAVGNPAKLIG 252 (269)
T ss_pred CCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccC--CCceecCCchhhcc
Confidence 349999999999999999999999999999999999765 4444 444444443
No 174
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.56 E-value=2.7e-07 Score=69.81 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=85.9
Q ss_pred ECCCCEECCccEE-cceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEeCCCcCCeEEC
Q 024191 91 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 169 (271)
Q Consensus 91 Ig~~~~Ig~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~~~~~ig 169 (271)
|.+.+.+-.-+.| .+.+|+++|.+.+.+++-+. .+..+||+++.|.+++.|... +-
T Consensus 11 Iap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~-----------------aGPI~iGEnniiEEyA~i~n~------~~ 67 (190)
T KOG4042|consen 11 IAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIAT-----------------AGPIYIGENNIIEEYAVIRNR------LE 67 (190)
T ss_pred ecCceEEEEecccccceEecCCcEecceEEEEcc-----------------cCCEEEccCchhhhHHHHHhh------cC
Confidence 3333333333334 56667777777766665432 258888888888888877521 11
Q ss_pred CCcEECCCcEEccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEe--ccCCCCCeEEcC
Q 024191 170 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGF 247 (271)
Q Consensus 170 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~--~~~~~~~~~~g~ 247 (271)
++..-... +....||.+.++.-++.... ..+||+-+|+..+.+++++.+.++|.+|++..+. +.+|+++.++|.
T Consensus 68 ~~~~~d~~---~~pmiIGt~NvFeVgc~s~A-~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga 143 (190)
T KOG4042|consen 68 PGAVWDSD---GQPMIIGTWNVFEVGCKSSA-KKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGA 143 (190)
T ss_pred CCCccCCC---CCeEEEeccceEEeechhhh-hhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEcc
Confidence 11111111 13456777766655554433 6789999999999999999999999999998876 578999988775
Q ss_pred CC
Q 024191 248 PA 249 (271)
Q Consensus 248 p~ 249 (271)
-.
T Consensus 144 ~~ 145 (190)
T KOG4042|consen 144 TN 145 (190)
T ss_pred cc
Confidence 43
No 175
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.51 E-value=5.6e-07 Score=80.82 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=41.8
Q ss_pred CCcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECC
Q 024191 75 ANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 154 (271)
Q Consensus 75 ~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~ 154 (271)
+.+.|+++|.| .++.||++|.|+ +.+.+|+|+++|.|+++|.|. +++|++++.|++
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~---------------------~sii~~~~~I~~ 332 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIK---------------------NCIIMQRTVIGE 332 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEE---------------------eeEEeCCCEECC
Confidence 44555555555 355666777775 346777888888888888875 777777777777
Q ss_pred ccEEe
Q 024191 155 NSCID 159 (271)
Q Consensus 155 ~~~i~ 159 (271)
++.+.
T Consensus 333 ~~~i~ 337 (369)
T TIGR02092 333 GAHLE 337 (369)
T ss_pred CCEEE
Confidence 77663
No 176
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=6.9e-06 Score=72.51 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=36.6
Q ss_pred CcEECCCCEECCCcEECCCCEECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCc
Q 024191 76 NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 155 (271)
Q Consensus 76 ~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~ 155 (271)
.+.+.+.+.+. ++.++++|.|.. .|.+|+|+.+++|+.++.|. +|+|-.+|.||.+
T Consensus 285 Pak~~~~s~v~-nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~---------------------~svim~~~~IG~~ 340 (393)
T COG0448 285 PAKFVNDSEVS-NSLVAGGCIISG--TVENSVLFRGVRIGKGSVIE---------------------NSVIMPDVEIGEG 340 (393)
T ss_pred CceEecCceEe-eeeeeCCeEEEe--EEEeeEEecCeEECCCCEEE---------------------eeEEeCCcEECCC
Confidence 33333333333 445555565544 56677777777777777775 6777777777777
Q ss_pred cEEe
Q 024191 156 SCID 159 (271)
Q Consensus 156 ~~i~ 159 (271)
|++.
T Consensus 341 ~~l~ 344 (393)
T COG0448 341 AVLR 344 (393)
T ss_pred CEEE
Confidence 7664
No 177
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.23 E-value=2.2e-06 Score=49.11 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=21.0
Q ss_pred CcEECCCcEEccccEECCCCEECCCcEEcCCcEEec
Q 024191 201 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK 236 (271)
Q Consensus 201 ~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~ 236 (271)
+++||++|+|++++.| +++||+++.|++++.+.+
T Consensus 1 pv~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp TEEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred CeEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 3567777777777777 578888888888777653
No 178
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.17 E-value=1.3e-05 Score=65.32 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=52.3
Q ss_pred ccccEECCCCEEcccceeccCcEECCCcEEccccEECCCCEECCCcEEcCCcEEeccCCCCCeEEcCCCchhhHHHHHHH
Q 024191 181 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVA 260 (271)
Q Consensus 181 ~~~~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~~~~~~~~~~~g~p~~~i~~~~~~~~ 260 (271)
+.++.|+.+|.+.+++...+.+.||+.+.|.+..++..+..+|+++.|..+-.- .+.+...+|-..+..+-.+..
T Consensus 54 a~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieggfva-----~g~Ivirnpvpvl~fl~lyl~ 128 (277)
T COG4801 54 AKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGGFVA-----KGWIVIRNPVPVLEFLFLYLS 128 (277)
T ss_pred ecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecCeee-----cceEEEcCCccEEEEEhhHHH
Confidence 355666666666666666677778888888888888888888888888766322 233344566666555555555
Q ss_pred Hhhccc
Q 024191 261 NQIRSS 266 (271)
Q Consensus 261 ~~~r~~ 266 (271)
.+-||.
T Consensus 129 vllrlG 134 (277)
T COG4801 129 VLLRLG 134 (277)
T ss_pred HHHhcc
Confidence 555444
No 179
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.03 E-value=0.00016 Score=59.15 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=14.6
Q ss_pred CCcEECCCCEECCCcEECCCCEECCccEE
Q 024191 75 ANVCIGSGTVVGPAVTIGQSTNIGFNVAL 103 (271)
Q Consensus 75 ~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I 103 (271)
.+++|+.+|.+..|+....+++||+++.|
T Consensus 55 ~diridmw~kv~gNV~ve~dayiGE~~sI 83 (277)
T COG4801 55 KDIRIDMWCKVTGNVIVENDAYIGEFSSI 83 (277)
T ss_pred cceeeeeeeEeeccEEEcCceEEecccee
Confidence 44555555555555545455555555444
No 180
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.95 E-value=8.7e-06 Score=47.26 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=18.7
Q ss_pred cEECCCcEEccccEECCCCEECCCcEEcCCcEEe
Q 024191 202 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF 235 (271)
Q Consensus 202 v~Ig~~~~Ig~~~~i~~~~~ig~~~~i~~~s~v~ 235 (271)
+.||++++|+.++.|.+++.|++++.|++++.+.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4555555555555555555555555555555543
No 181
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.85 E-value=2e-05 Score=45.04 Aligned_cols=32 Identities=38% Similarity=0.672 Sum_probs=17.6
Q ss_pred cEECCCCEEcccceeccCcEECCCcEEccccEEC
Q 024191 184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR 217 (271)
Q Consensus 184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~ 217 (271)
+.||++|+|+.++.+ ++.|||+|.|+++++|.
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEE
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEEc
Confidence 345555555555555 47788888888777764
No 182
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.79 E-value=2.2e-05 Score=45.56 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=17.9
Q ss_pred cEECCCCEEcccceeccCcEECCCcEEccccEE
Q 024191 184 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV 216 (271)
Q Consensus 184 ~~ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i 216 (271)
+.|+++++|++++.+.+++.||+++.|+++++|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 345555555555555555666666666655555
No 183
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=88.67 E-value=0.73 Score=42.17 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=15.6
Q ss_pred cEECCCcEECCCCEECCCcEECCCCEECCccEEcce
Q 024191 71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 106 (271)
Q Consensus 71 ~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~~~ 106 (271)
+.|..++.++++++|+ ++.|+.++.||++|+|.++
T Consensus 285 Sil~~~~~vg~~svIe-~s~l~~~~~IG~~cIisGv 319 (414)
T PF07959_consen 285 SILEGGVSVGPGSVIE-HSHLGGPWSIGSNCIISGV 319 (414)
T ss_pred eEecCCceECCCCEEE-eeecCCCCEECCCCEEECC
Confidence 4444444444444443 3344444444444444333
No 184
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=88.09 E-value=1.6 Score=39.94 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=24.9
Q ss_pred ECCccEEcceEECCCcEECCCCEECCCCceeEEccCCceecCCceeceEECCCcEECCccEEe
Q 024191 97 IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID 159 (271)
Q Consensus 97 Ig~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~ 159 (271)
+...+.|-+|+|..++.++++++|. ++.++.++.||.++.|.
T Consensus 276 ~~~~~~VinSil~~~~~vg~~svIe---------------------~s~l~~~~~IG~~cIis 317 (414)
T PF07959_consen 276 SEASSCVINSILEGGVSVGPGSVIE---------------------HSHLGGPWSIGSNCIIS 317 (414)
T ss_pred cCCCeeEEEeEecCCceECCCCEEE---------------------eeecCCCCEECCCCEEE
Confidence 4444555566666666666666665 56666666666666553
No 185
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=83.07 E-value=0.072 Score=45.20 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=23.2
Q ss_pred eeeEEeeccccHHHHHHHHhhhccCCCCCch
Q 024191 5 RFVHYYRLTKTYKQDFGRFCNLFSTKSDIES 35 (271)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 35 (271)
+.+.+... .|+|.|.+++.++++++..+..
T Consensus 208 ~~~~~~~~-~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 208 YLVVAILI-RGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred cEEEEEEc-cceEEecCChhhHHHHHHHHHH
Confidence 34445555 7799999999999999877665
No 186
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=78.15 E-value=8.1 Score=27.56 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=2.9
Q ss_pred ECCCCEEC
Q 024191 61 IEVGAIVH 68 (271)
Q Consensus 61 I~~~~~I~ 68 (271)
|++++.+.
T Consensus 5 I~~~~~i~ 12 (101)
T PF04519_consen 5 IGKGTKIE 12 (101)
T ss_pred ECCCCEEE
Confidence 33333333
No 187
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=61.08 E-value=12 Score=38.04 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=15.1
Q ss_pred CcEECCCcEECCCCEECCCcEECCCCEECCccEEc
Q 024191 70 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS 104 (271)
Q Consensus 70 ~~~Ig~~v~Ig~~~~I~~~~~Ig~~~~Ig~~~~I~ 104 (271)
++++..++.+++++..-.++.|+.+..||.+|+|.
T Consensus 336 ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iis 370 (974)
T PRK13412 336 NAVLSGKLTAENATLWIENSHVGEGWKLASRSIIT 370 (974)
T ss_pred eeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEe
Confidence 34444444444443322244444444444444443
No 188
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=57.78 E-value=18 Score=36.74 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=38.3
Q ss_pred EccCcEECCCcEECCCCEECcCcEECCCcEECCCCEECCCcE-ECCCCEECCccEEcceEE
Q 024191 49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVT-IGQSTNIGFNVALSNCII 108 (271)
Q Consensus 49 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~v~Ig~~~~I~~~~~-Ig~~~~Ig~~~~I~~~~I 108 (271)
+--++.+++++.++++...-++++|++++.||.+|+|. ++. ..-+..|-+++.|...-+
T Consensus 333 ~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iis-gv~~~~~~~~vP~~~ci~~vpl 392 (974)
T PRK13412 333 FVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIIT-GVPENSWNLDLPEGVCIDVVPV 392 (974)
T ss_pred EEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEe-cccccccceecCCCcEEEEEEc
Confidence 44567777888888876655788899999999999885 322 111245556655543333
No 189
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=46.84 E-value=11 Score=26.06 Aligned_cols=15 Identities=27% Similarity=0.100 Sum_probs=12.0
Q ss_pred cCCCCCeEEcCCCch
Q 024191 237 DITEPGDYGGFPAVP 251 (271)
Q Consensus 237 ~~~~~~~~~g~p~~~ 251 (271)
|+||+.++.|+|++.
T Consensus 1 DVpPf~~~~G~~a~~ 15 (83)
T PF13720_consen 1 DVPPFMLVAGNPARI 15 (83)
T ss_dssp BB-TTEEEETTTTEE
T ss_pred CCCCeEEecCCccEE
Confidence 789999999999865
No 190
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=31.52 E-value=2.4e+02 Score=21.72 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=6.8
Q ss_pred eEECCCcEECCCCEE
Q 024191 106 CIIGDSCIIHNGVCI 120 (271)
Q Consensus 106 ~~Ig~~~~I~~~~~i 120 (271)
...-+.+.|.+.+.+
T Consensus 85 i~~a~~Vei~~~g~v 99 (146)
T COG1664 85 ILAAERVELYPGGRV 99 (146)
T ss_pred EEEeeEEEEcCCcEE
Confidence 333444555544444
No 191
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=20.60 E-value=1.1e+02 Score=28.15 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=6.1
Q ss_pred ECCCcEECCCCEEC
Q 024191 73 LGANVCIGSGTVVG 86 (271)
Q Consensus 73 Ig~~v~Ig~~~~I~ 86 (271)
+.++|.+|.++.+.
T Consensus 450 VsGdV~FGknV~Lk 463 (498)
T KOG2638|consen 450 VSGDVWFGKNVSLK 463 (498)
T ss_pred EeccEEeccceEEe
Confidence 33444444444444
Done!