BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024194
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 136/239 (56%), Gaps = 31/239 (12%)
Query: 60 SPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL 119
+ P S + ++ P +G RDFPPE MRLR +LF F +R FGFEE D PVLESE L
Sbjct: 16 TQGPGSMQMNMVETEPVQGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEEL 75
Query: 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
+IRKAGEEI +Q++ F +G RVALRPE+TPSLAR ++ KG+S+ LP KW+++ QCW
Sbjct: 76 YIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARQLLAKGRSLLLPAKWYSIPQCWRY 135
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVT-------------------------------VLQE 208
EHYQWNMDIIGV +V+ +LQ
Sbjct: 136 EAITRGRRREHYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQT 195
Query: 209 VLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL 267
V+ + F VC+I+DK+EKLP + + L + G+ ++ + LS+K++ E+
Sbjct: 196 VVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEI 254
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 138/243 (56%), Gaps = 33/243 (13%)
Query: 56 ARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLE 115
A++ P + ++ ++ P +G RDFPPE MR R LF F ++ FGFEE D PVLE
Sbjct: 14 AQTQGPGSMQKNM--VETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLE 71
Query: 116 SEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQ 175
SE L+IRKAGEEI +Q++ F +G RVALRPE+TPSLARL++ KG+S+ LP KW+++ Q
Sbjct: 72 SEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQ 131
Query: 176 CWXXXXXXXXXXXEHYQWNMDIIGVPAVT------------------------------- 204
CW EHYQWNMDI+GV +V+
Sbjct: 132 CWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRK 191
Query: 205 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 264
VLQ V+ + F VC+I+DK+EK+P + ++ L G+ ++ + LS+KS+
Sbjct: 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSI 251
Query: 265 TEL 267
E+
Sbjct: 252 DEI 254
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 97/211 (45%), Gaps = 29/211 (13%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
++ + +G RDF PED + ++F +E + FGF +DFP LE L+ K+GEE+
Sbjct: 3 RLQIEKIRGFRDFYPEDXDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELL 62
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXE 189
Q Y F D+G R V L PE TPS R V + K + PL+W++ + W E
Sbjct: 63 QQTYSFVDKGGREVTLIPEATPSTVRXVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYRE 121
Query: 190 HYQWNMDIIGVPAVTVLQEVLRCHS--------------------IPEHLFG-------- 221
HYQ+N DI G + EV+ S I E + G
Sbjct: 122 HYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIXEEIIGGXTSSDPF 181
Query: 222 KVCIIIDKIEKLPLDVIKNDLKSAGMSEAAI 252
V IID+ K+ + + L+SAG+ E +
Sbjct: 182 SVFSIIDRYHKISREEFVDQLRSAGIGEDGV 212
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQL 132
P+GT+D PED + ++ + E+ + ++E+ P+ ES LF R G+ ++ ++
Sbjct: 5 PRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEM 64
Query: 133 YCFEDRGNRRVALRPELTPSLARLVIQKG--KSVSLPLKWFAVGQCWXXXXXXXXXXXEH 190
Y F+D+G+R + LRPE T ++ R I+ + + P+K + G + +
Sbjct: 65 YTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQF 124
Query: 191 YQWNMDIIGVPAVTVLQEVL 210
Q+ ++ IG +V EVL
Sbjct: 125 NQFGVEAIGAENPSVDAEVL 144
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 38/207 (18%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
QK + PKGTRD+ P M +R +F + G E +D PV E + + K GE+
Sbjct: 63 QKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDS 122
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWXXX--XXXXX 185
+ +Y +D+G ++LR +LT AR L + K ++ K + + + +
Sbjct: 123 K-LIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI----KRYHIAKVYRRDNPAMTRG 177
Query: 186 XXXEHYQWNMDIIG-----VPAVTVLQ---EVLRCHSIPEHL------------------ 219
E YQ + DI G +P L+ E+L I + L
Sbjct: 178 RYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGV 237
Query: 220 ----FGKVCIIIDKIEKLPLDVIKNDL 242
F +C +DK++K+ + +KN++
Sbjct: 238 SDSKFRTICSSVDKLDKVSWEEVKNEM 264
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 38/203 (18%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQL 132
+ PKGTRD+ P M +R +F + G E +D PV E + + K GE+ + +
Sbjct: 14 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSK-LI 72
Query: 133 YCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWXXX--XXXXXXXXE 189
Y +D+G ++LR +LT AR L + K ++ K + + + + E
Sbjct: 73 YDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI----KRYHIAKVYRRDNPAMTRGRYRE 128
Query: 190 HYQWNMDIIG-----VPAVTVLQ---EVLRCHSIPEHL---------------------- 219
YQ + DI G +P L+ E+L I + L
Sbjct: 129 FYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSK 188
Query: 220 FGKVCIIIDKIEKLPLDVIKNDL 242
F +C +DK++K+ + +KN++
Sbjct: 189 FRTICSSVDKLDKVSWEEVKNEM 211
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLY 133
+GT+D +++R+ + ++V G E+ P+ E +F + G +R +++
Sbjct: 7 RGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMF 66
Query: 134 CFEDRGNRRVALRPELTPSLARLVIQKGKSV-SLPLKWFAVGQCWXXXXXXXXXXXEHYQ 192
F+DRG R + LRPE T ++ R ++ G V P++ + G + + +Q
Sbjct: 67 TFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQ 126
Query: 193 WNMDIIG-------VPAVTVLQEVLR 211
N + +G AV +L E L+
Sbjct: 127 VNYEALGSENPILDAEAVVLLYECLK 152
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 15/167 (8%)
Query: 63 PVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122
P++ ++Q I +G D+ P + + + + V +G+ E+ P++E LF R
Sbjct: 7 PMAKNIQAI-----RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKR 61
Query: 123 KAGEE---IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
GE + ++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 62 AIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRH 121
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVTVLQEVL-------RCHSIPEHL 219
+ +Q ++ G+ + E++ R I EH+
Sbjct: 122 ERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHV 168
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 4 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 63
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 64 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 123
Query: 189 EHYQWNMDIIGVPAVTVLQEVL-------RCHSIPEHL 219
+ +Q ++ G+ + E++ R I EH+
Sbjct: 124 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHV 161
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 62
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 63 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 122
Query: 189 EHYQWNMDIIGVPAVTVLQEVL-------RCHSIPEHL 219
+ +Q ++ G+ + E++ R I EH+
Sbjct: 123 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHV 160
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 20/200 (10%)
Query: 56 ARSLSPSPVSDDLQKID-VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVL 114
A++ P +++ +K++ + KG D P+D L + + + R +G++ + P++
Sbjct: 14 AQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIV 73
Query: 115 ESEALFIRKAGEE---IRDQLYCFEDRGN-RRVALRPELTPSLARLVIQKGKSVSLPLKW 170
E LF R GE + ++Y F D N + LRPE T ++ R I+ P +
Sbjct: 74 EHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRL 133
Query: 171 FAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAVTVLQE-VLRCHSIPEHLFGKVCIIIDK 229
+ +G + + +Q ++ +G E V+ C +
Sbjct: 134 WYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRL-------------- 179
Query: 230 IEKLPLDVIKNDLKSAGMSE 249
E L L IK ++ S G++E
Sbjct: 180 WEDLGLTGIKLEINSLGLAE 199
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR-KAGEEIRDQ 131
+ P G +D P+ + R + G+E V + E +R ++ E RD
Sbjct: 23 ADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDW 82
Query: 132 LYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKW 170
+ F D G VALRPE+TPS+AR+ + + P++W
Sbjct: 83 IRLF-DGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRW 120
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLES-EALFIRKAGEEIRDQLYC 134
P G RD PE + + + E L+G++ ++ P LE E + + A + QL+
Sbjct: 13 PFGXRDTLPEWYKTKKNICDQXTEEINLWGYDXIETPTLEYYETVGVVSA--ILDQQLFK 70
Query: 135 FEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWN 194
D+ + LRP+ T +ARLV K + PL+ + E Q
Sbjct: 71 LLDQQGNTLVLRPDXTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLG 130
Query: 195 MDIIGVPAVTVLQEVL 210
+++IG + EV+
Sbjct: 131 VELIGDGTASADGEVI 146
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 21/165 (12%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N +G
Sbjct: 133 CLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT 192
Query: 204 -----TVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK 243
+++ + L I + G C++ LDV+ DL+
Sbjct: 193 RENLESIITDFLNHLGIDFKIVGDSCMVYGDT----LDVMHGDLE 233
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 21/165 (12%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N +G
Sbjct: 133 CLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT 192
Query: 204 -----TVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK 243
+++ + L I + G C++ LDV+ DL+
Sbjct: 193 RENLESIITDFLNHLGIDFKIVGDSCMVYGDT----LDVMHGDLE 233
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 21/165 (12%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 77 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 131
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXE-----HYQWNMDII 198
LRP LTP+L + + +++ P+K F +G C+ E +Q
Sbjct: 132 CLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCT 191
Query: 199 GVPAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK 243
+++ + L I + G C++ LDV+ DL+
Sbjct: 192 RENLESIITDFLNHLGIDFKIVGDSCMVFGDT----LDVMHGDLE 232
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 21/165 (12%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERXGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N G
Sbjct: 133 CLRPXLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTXLNFCQXGSGCT 192
Query: 204 -----TVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK 243
+++ + L I + G C + LDV DL+
Sbjct: 193 RENLESIITDFLNHLGIDFKIVGDSCXVYGDT----LDVXHGDLE 233
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
KI+ + P G +F P + RL +L + V +GF ++ P +E + ++ G +
Sbjct: 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEV-LQAKGNQGD 67
Query: 130 DQLYCFE---------------DRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVG 174
+ +Y E D G+ AL+ + T LA + + ++ P +
Sbjct: 68 NIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQXD 127
Query: 175 QCWXXXXXXXXXXXEHYQWNMDIIGVPAVTVL 206
+ + Q ++D++G +++L
Sbjct: 128 VVFRGERAKDGRFRQFRQCDIDVVGREKLSLL 159
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE 126
E++ + N FH+F+++ R G+ E D P++ +++ GE
Sbjct: 281 ENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGE 322
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 212 CHSIPE----HLFGKVCIIIDKIEKLPLDVIKNDL---KSAGMSEAAIEELLRVLSIKSL 264
C SIP +F K +LP D+I N KSAG+ E++L LSI SL
Sbjct: 318 CSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDILSELSIYSL 377
Query: 265 TE 266
E
Sbjct: 378 DE 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,800,099
Number of Sequences: 62578
Number of extensions: 316023
Number of successful extensions: 595
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 36
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)