Query 024194
Match_columns 271
No_of_seqs 218 out of 1642
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02530 histidine-tRNA ligase 100.0 2.5E-45 5.4E-50 358.1 25.0 221 50-270 47-298 (487)
2 KOG1936 Histidyl-tRNA syntheta 100.0 2.6E-43 5.5E-48 328.7 15.9 197 67-267 54-283 (518)
3 COG0124 HisS Histidyl-tRNA syn 100.0 1.9E-41 4E-46 323.8 17.3 148 70-217 1-158 (429)
4 PRK12292 hisZ ATP phosphoribos 100.0 6.1E-41 1.3E-45 319.2 19.9 189 72-270 2-198 (391)
5 PRK12421 ATP phosphoribosyltra 100.0 4.1E-40 8.9E-45 313.6 20.6 188 72-270 6-201 (392)
6 PRK12420 histidyl-tRNA synthet 100.0 4.3E-40 9.2E-45 316.2 19.6 197 70-267 1-227 (423)
7 PLN02972 Histidyl-tRNA synthet 100.0 1.2E-38 2.5E-43 320.1 21.2 190 70-263 324-544 (763)
8 CHL00201 syh histidine-tRNA sy 100.0 4.1E-37 8.8E-42 296.2 19.3 149 71-219 2-161 (430)
9 PRK12293 hisZ ATP phosphoribos 100.0 5.7E-37 1.2E-41 280.3 18.7 162 70-252 2-167 (281)
10 TIGR00443 hisZ_biosyn_reg ATP 100.0 1.6E-36 3.5E-41 281.1 19.1 179 80-269 1-186 (314)
11 PF13393 tRNA-synt_His: Histid 100.0 1.7E-36 3.6E-41 279.3 17.2 180 78-269 1-188 (311)
12 COG3705 HisZ ATP phosphoribosy 100.0 7.7E-35 1.7E-39 274.2 14.3 188 71-270 1-195 (390)
13 TIGR00442 hisS histidyl-tRNA s 100.0 8.4E-34 1.8E-38 270.0 20.6 187 74-260 1-214 (397)
14 PRK00037 hisS histidyl-tRNA sy 100.0 2.3E-33 4.9E-38 268.1 16.8 146 70-218 1-156 (412)
15 PRK12295 hisZ ATP phosphoribos 100.0 1.2E-32 2.6E-37 260.8 18.3 162 88-264 5-174 (373)
16 cd00773 HisRS-like_core Class 100.0 1.4E-32 3.1E-37 248.1 17.4 175 86-270 1-182 (261)
17 PRK12294 hisZ ATP phosphoribos 100.0 2.5E-28 5.5E-33 222.1 17.0 162 85-270 5-173 (272)
18 PRK00413 thrS threonyl-tRNA sy 99.9 2.7E-27 5.8E-32 237.9 13.3 145 74-219 257-417 (638)
19 PRK12305 thrS threonyl-tRNA sy 99.9 4.3E-26 9.2E-31 226.8 11.4 145 74-219 193-353 (575)
20 cd00771 ThrRS_core Threonyl-tR 99.9 2.9E-24 6.3E-29 197.9 14.1 143 75-219 18-176 (298)
21 cd00779 ProRS_core_prok Prolyl 99.9 7.5E-25 1.6E-29 197.7 9.8 144 73-217 17-176 (255)
22 PRK09194 prolyl-tRNA synthetas 99.9 6.8E-24 1.5E-28 210.8 15.1 143 73-216 33-191 (565)
23 PRK14799 thrS threonyl-tRNA sy 99.9 4.2E-24 9.2E-29 210.7 12.2 182 74-258 155-360 (545)
24 TIGR00418 thrS threonyl-tRNA s 99.9 1.3E-23 2.7E-28 208.6 13.0 143 75-218 188-346 (563)
25 cd00772 ProRS_core Prolyl-tRNA 99.9 4.1E-23 8.8E-28 187.4 14.8 147 69-216 14-182 (264)
26 TIGR00409 proS_fam_II prolyl-t 99.9 3.1E-23 6.7E-28 205.9 15.2 140 73-216 33-191 (568)
27 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 2.6E-23 5.6E-28 183.6 11.9 130 87-216 2-149 (235)
28 cd00774 GlyRS-like_core Glycyl 99.9 1.8E-22 4E-27 182.1 10.7 136 74-220 19-172 (254)
29 PRK12444 threonyl-tRNA synthet 99.9 6.8E-22 1.5E-26 199.1 12.0 141 74-216 261-417 (639)
30 PRK12325 prolyl-tRNA synthetas 99.8 5.4E-21 1.2E-25 184.9 11.6 141 74-217 34-192 (439)
31 PLN02908 threonyl-tRNA synthet 99.8 1.9E-20 4.2E-25 189.8 12.7 141 74-216 308-464 (686)
32 TIGR02367 PylS pyrrolysyl-tRNA 99.8 1.1E-19 2.5E-24 173.1 15.2 125 88-216 240-372 (453)
33 cd00778 ProRS_core_arch_euk Pr 99.8 1.6E-19 3.5E-24 163.5 10.1 147 70-216 15-182 (261)
34 PF00587 tRNA-synt_2b: tRNA sy 99.8 2.8E-18 6E-23 145.8 13.4 128 89-217 1-145 (173)
35 TIGR00408 proS_fam_I prolyl-tR 99.8 8E-19 1.7E-23 171.2 9.2 147 69-216 20-188 (472)
36 PRK04172 pheS phenylalanyl-tRN 99.8 1.5E-18 3.3E-23 169.9 9.3 142 71-217 218-405 (489)
37 PRK08661 prolyl-tRNA synthetas 99.7 1E-17 2.2E-22 163.6 11.2 146 69-217 26-194 (477)
38 PRK09537 pylS pyrolysyl-tRNA s 99.7 1.1E-16 2.5E-21 152.6 12.7 123 90-216 206-336 (417)
39 cd00768 class_II_aaRS-like_cor 99.6 3.8E-15 8.3E-20 128.1 13.6 123 90-216 2-135 (211)
40 cd00770 SerRS_core Seryl-tRNA 99.6 2.5E-15 5.5E-20 138.6 10.8 138 76-217 41-197 (297)
41 COG0442 ProS Prolyl-tRNA synth 99.6 8.9E-15 1.9E-19 142.6 12.0 143 70-216 31-191 (500)
42 PTZ00326 phenylalanyl-tRNA syn 99.5 1.6E-14 3.4E-19 140.5 9.4 177 71-250 214-461 (494)
43 PLN02837 threonine-tRNA ligase 99.5 1E-13 2.2E-18 139.4 11.4 142 75-217 235-392 (614)
44 KOG2324 Prolyl-tRNA synthetase 99.5 9.2E-14 2E-18 128.6 9.5 144 74-218 39-199 (457)
45 PRK04173 glycyl-tRNA synthetas 99.5 2.5E-13 5.5E-18 132.1 12.7 144 75-219 26-250 (456)
46 PRK03991 threonyl-tRNA synthet 99.5 6.1E-13 1.3E-17 133.5 13.2 173 71-248 209-401 (613)
47 KOG1035 eIF-2alpha kinase GCN2 99.4 5.4E-13 1.2E-17 138.5 10.6 162 80-260 925-1093(1351)
48 TIGR00414 serS seryl-tRNA synt 99.4 3E-12 6.6E-17 123.3 12.8 138 76-217 162-318 (418)
49 PRK09350 poxB regulator PoxA; 99.3 1.4E-12 3E-17 120.9 6.3 108 86-203 4-114 (306)
50 PRK05431 seryl-tRNA synthetase 99.3 1.1E-11 2.3E-16 119.8 12.4 138 76-217 159-316 (425)
51 COG0441 ThrS Threonyl-tRNA syn 99.3 7.2E-12 1.6E-16 124.5 7.3 143 74-218 207-365 (589)
52 cd00669 Asp_Lys_Asn_RS_core As 99.1 3.6E-10 7.8E-15 103.1 10.6 99 88-201 2-103 (269)
53 PRK00960 seryl-tRNA synthetase 99.1 5.6E-10 1.2E-14 109.7 10.4 146 70-216 206-397 (517)
54 PF01409 tRNA-synt_2d: tRNA sy 99.0 4E-09 8.7E-14 95.1 12.4 128 85-216 14-157 (247)
55 TIGR00468 pheS phenylalanyl-tR 99.0 6.2E-09 1.3E-13 96.1 12.0 138 70-216 56-204 (294)
56 PLN02678 seryl-tRNA synthetase 99.0 4.7E-09 1E-13 101.9 11.1 137 78-216 165-322 (448)
57 KOG1637 Threonyl-tRNA syntheta 98.9 8.1E-10 1.7E-14 105.5 5.0 131 71-203 176-313 (560)
58 cd00496 PheRS_alpha_core Pheny 98.9 4.6E-08 9.9E-13 86.4 13.3 118 90-214 3-132 (218)
59 TIGR00415 serS_MJ seryl-tRNA s 98.8 5.3E-08 1.1E-12 95.2 12.8 146 70-216 206-397 (520)
60 PRK00488 pheS phenylalanyl-tRN 98.8 9.1E-08 2E-12 89.7 13.2 135 70-214 92-238 (339)
61 PRK14894 glycyl-tRNA synthetas 98.8 3.7E-08 8E-13 96.1 10.4 143 75-220 28-230 (539)
62 PLN02320 seryl-tRNA synthetase 98.7 3E-08 6.5E-13 97.2 8.7 137 77-217 221-379 (502)
63 cd00777 AspRS_core Asp tRNA sy 98.7 9E-08 1.9E-12 87.9 10.6 100 88-201 2-103 (280)
64 cd00776 AsxRS_core Asx tRNA sy 98.7 1E-07 2.2E-12 89.1 10.3 106 84-204 21-127 (322)
65 COG0423 GRS1 Glycyl-tRNA synth 98.7 4.2E-08 9.2E-13 95.5 6.9 125 76-203 29-226 (558)
66 PLN02853 Probable phenylalanyl 98.7 1.4E-07 3E-12 92.1 10.2 169 81-250 214-446 (492)
67 TIGR00389 glyS_dimeric glycyl- 98.6 9.1E-08 2E-12 94.9 7.3 124 76-202 26-221 (551)
68 COG0016 PheS Phenylalanyl-tRNA 98.5 9E-07 2E-11 82.7 11.8 138 71-215 96-245 (335)
69 COG0173 AspS Aspartyl-tRNA syn 98.5 1.5E-06 3.2E-11 85.3 13.0 108 85-204 139-246 (585)
70 TIGR00462 genX lysyl-tRNA synt 98.4 4.6E-07 1E-11 84.1 6.5 103 88-202 2-108 (304)
71 PF00152 tRNA-synt_2: tRNA syn 98.4 3.7E-06 8E-11 78.8 12.2 106 86-204 21-131 (335)
72 TIGR00459 aspS_bact aspartyl-t 98.4 2.4E-06 5.1E-11 85.6 11.2 104 86-203 137-242 (583)
73 cd00775 LysRS_core Lys_tRNA sy 98.3 7E-06 1.5E-10 77.0 12.3 102 86-202 7-111 (329)
74 COG0172 SerS Seryl-tRNA synthe 98.3 5.5E-06 1.2E-10 79.9 11.6 139 75-217 162-319 (429)
75 PLN02734 glycyl-tRNA synthetas 98.3 9.2E-07 2E-11 89.4 6.0 126 74-202 96-313 (684)
76 PRK06462 asparagine synthetase 98.3 4.1E-06 9E-11 78.8 9.4 109 85-201 28-139 (335)
77 PRK00476 aspS aspartyl-tRNA sy 98.3 5.7E-06 1.2E-10 83.1 10.9 105 86-204 140-246 (588)
78 TIGR00458 aspS_arch aspartyl-t 98.2 9.8E-06 2.1E-10 78.6 11.6 106 85-204 131-237 (428)
79 PRK09616 pheT phenylalanyl-tRN 98.2 1.8E-05 3.8E-10 79.2 13.2 129 86-216 357-492 (552)
80 PRK03932 asnC asparaginyl-tRNA 98.2 9.1E-06 2E-10 79.3 10.9 105 85-203 131-244 (450)
81 PRK00484 lysS lysyl-tRNA synth 98.2 1.6E-05 3.5E-10 78.4 12.5 103 85-202 170-275 (491)
82 PLN02903 aminoacyl-tRNA ligase 98.2 1E-05 2.3E-10 81.7 10.9 106 86-204 202-309 (652)
83 PRK05159 aspC aspartyl-tRNA sy 98.2 1.5E-05 3.2E-10 77.6 11.5 104 85-202 134-238 (437)
84 PRK12820 bifunctional aspartyl 98.2 1.4E-05 3.1E-10 81.5 11.5 108 85-204 154-261 (706)
85 COG2269 Truncated, possibly in 98.2 2.7E-05 5.8E-10 71.0 12.0 163 85-260 14-194 (322)
86 PRK12445 lysyl-tRNA synthetase 98.2 1.4E-05 3.1E-10 79.0 10.9 104 86-202 183-287 (505)
87 PTZ00385 lysyl-tRNA synthetase 98.1 2.8E-05 6.1E-10 78.7 11.6 105 86-203 232-337 (659)
88 PTZ00417 lysine-tRNA ligase; P 98.1 2.9E-05 6.2E-10 78.0 11.3 103 86-201 252-355 (585)
89 PLN02502 lysyl-tRNA synthetase 98.0 2.6E-05 5.6E-10 77.9 10.0 103 86-201 228-331 (553)
90 PLN02850 aspartate-tRNA ligase 98.0 2.5E-05 5.4E-10 77.7 9.2 102 86-201 224-327 (530)
91 TIGR00457 asnS asparaginyl-tRN 98.0 4.4E-05 9.5E-10 74.7 10.3 103 86-202 135-246 (453)
92 cd00769 PheRS_beta_core Phenyl 98.0 5E-05 1.1E-09 65.9 9.6 120 91-215 3-139 (198)
93 TIGR00499 lysS_bact lysyl-tRNA 98.0 3.8E-05 8.3E-10 75.9 9.6 103 86-201 171-274 (496)
94 PTZ00425 asparagine-tRNA ligas 97.9 0.00011 2.4E-09 73.7 11.8 33 86-118 214-246 (586)
95 KOG2411 Aspartyl-tRNA syntheta 97.9 3.2E-05 6.9E-10 75.1 7.6 105 87-203 178-283 (628)
96 TIGR00470 sepS O-phosphoseryl- 97.8 5.8E-05 1.3E-09 73.4 7.9 81 140-220 180-266 (533)
97 PTZ00401 aspartyl-tRNA synthet 97.8 8.3E-05 1.8E-09 74.2 8.8 102 86-201 212-315 (550)
98 PRK02983 lysS lysyl-tRNA synth 97.7 0.0001 2.2E-09 79.0 8.8 104 86-202 769-873 (1094)
99 KOG2509 Seryl-tRNA synthetase 97.7 0.00016 3.5E-09 69.3 8.8 137 77-217 173-332 (455)
100 PLN02603 asparaginyl-tRNA synt 97.7 0.00028 6.2E-09 70.6 10.9 99 87-201 226-356 (565)
101 COG0017 AsnS Aspartyl/asparagi 97.7 0.00022 4.8E-09 68.9 9.2 102 85-202 132-235 (435)
102 PLN02221 asparaginyl-tRNA synt 97.6 0.0005 1.1E-08 69.0 11.7 33 86-118 170-202 (572)
103 PLN02788 phenylalanine-tRNA sy 97.6 0.00072 1.6E-08 65.1 11.8 127 80-216 60-214 (402)
104 PLN02532 asparagine-tRNA synth 97.6 0.00048 1.1E-08 69.6 10.8 32 86-117 234-265 (633)
105 KOG2784 Phenylalanyl-tRNA synt 97.5 4.1E-05 8.9E-10 71.9 2.3 133 88-221 212-392 (483)
106 TIGR00471 pheT_arch phenylalan 97.4 0.0024 5.2E-08 64.0 12.5 128 86-216 360-494 (551)
107 PLN02265 probable phenylalanyl 97.0 0.0038 8.2E-08 63.2 10.1 129 86-216 395-531 (597)
108 KOG2298 Glycyl-tRNA synthetase 97.0 0.00034 7.3E-09 67.8 1.6 124 76-202 35-247 (599)
109 COG1190 LysU Lysyl-tRNA synthe 96.8 0.0045 9.7E-08 60.7 7.6 95 88-195 181-276 (502)
110 KOG1885 Lysyl-tRNA synthetase 96.7 0.0013 2.8E-08 63.7 3.1 98 86-196 224-322 (560)
111 TIGR00472 pheT_bact phenylalan 96.2 0.035 7.5E-07 58.1 10.6 118 95-216 498-632 (798)
112 COG2024 Phenylalanyl-tRNA synt 96.0 0.0025 5.4E-08 60.5 1.1 81 140-220 180-266 (536)
113 PRK00629 pheT phenylalanyl-tRN 96.0 0.046 1E-06 57.2 10.5 125 86-216 485-625 (791)
114 CHL00192 syfB phenylalanyl-tRN 96.0 0.05 1.1E-06 56.2 10.3 120 86-216 396-533 (704)
115 TIGR00469 pheS_mito phenylalan 95.9 0.059 1.3E-06 52.7 10.0 110 86-200 40-166 (460)
116 KOG0554 Asparaginyl-tRNA synth 95.6 0.02 4.4E-07 54.6 5.4 108 83-204 128-243 (446)
117 KOG0556 Aspartyl-tRNA syntheta 95.1 0.025 5.4E-07 54.3 4.2 108 71-198 217-326 (533)
118 KOG4163 Prolyl-tRNA synthetase 94.5 0.095 2.1E-06 50.7 6.4 130 67-200 78-222 (551)
119 PRK06253 O-phosphoseryl-tRNA s 94.4 0.063 1.4E-06 53.2 5.1 79 138-216 179-263 (529)
120 PRK07080 hypothetical protein; 93.0 1.2 2.5E-05 41.8 10.6 143 73-217 30-212 (317)
121 COG0072 PheT Phenylalanyl-tRNA 91.6 0.38 8.2E-06 49.4 6.2 126 87-216 350-490 (650)
122 KOG2472 Phenylalanyl-tRNA synt 84.5 5.8 0.00013 39.4 8.8 78 139-217 439-521 (578)
123 TIGR00443 hisZ_biosyn_reg ATP 80.8 4.7 0.0001 37.3 6.5 60 201-263 150-209 (314)
124 KOG0555 Asparaginyl-tRNA synth 80.1 3.8 8.1E-05 39.7 5.5 99 87-200 243-342 (545)
125 PRK12292 hisZ ATP phosphoribos 72.3 5.6 0.00012 38.1 4.6 58 201-263 161-218 (391)
126 PRK12421 ATP phosphoribosyltra 69.4 14 0.0003 35.6 6.6 61 200-263 163-223 (392)
127 PF13393 tRNA-synt_His: Histid 65.6 9 0.0002 35.0 4.3 56 202-260 153-208 (311)
128 PLN02530 histidine-tRNA ligase 61.4 12 0.00026 37.1 4.5 39 230-268 226-267 (487)
129 PRK12295 hisZ ATP phosphoribos 59.6 29 0.00063 33.2 6.7 33 200-232 142-174 (373)
130 PLN02972 Histidyl-tRNA synthet 56.6 19 0.00041 37.8 5.2 38 230-267 478-515 (763)
131 PF02091 tRNA-synt_2e: Glycyl- 56.0 32 0.00069 31.6 5.9 54 165-218 43-102 (284)
132 PF08328 ASL_C: Adenylosuccina 54.9 47 0.001 26.6 6.0 53 205-259 58-110 (115)
133 cd04750 Commd2 COMM_Domain con 48.5 40 0.00086 28.5 5.1 60 201-260 14-79 (166)
134 PRK12420 histidyl-tRNA synthet 43.5 26 0.00057 33.8 3.7 39 230-268 158-199 (423)
135 cd00733 GlyRS_alpha_core Class 39.8 45 0.00097 30.5 4.2 53 165-217 44-102 (279)
136 TIGR00388 glyQ glycyl-tRNA syn 38.7 48 0.001 30.5 4.2 53 165-217 45-103 (293)
137 PRK09348 glyQ glycyl-tRNA synt 38.4 47 0.001 30.4 4.1 54 165-218 48-107 (283)
138 KOG3449 60S acidic ribosomal p 37.9 71 0.0015 25.4 4.6 35 233-267 18-54 (112)
139 PF13543 KSR1-SAM: SAM like do 37.7 89 0.0019 25.5 5.3 33 228-260 94-126 (129)
140 cd04790 HTH_Cfa-like_unk Helix 34.9 1E+02 0.0022 26.1 5.6 50 206-258 121-170 (172)
141 COG4388 Mu-like prophage I pro 34.8 99 0.0022 29.0 5.7 97 76-194 40-143 (357)
142 PF01978 TrmB: Sugar-specific 31.1 28 0.00062 24.3 1.3 53 210-266 1-53 (68)
143 PLN03152 hypothetical protein; 30.8 53 0.0011 29.4 3.1 41 17-63 26-66 (241)
144 PTZ00373 60S Acidic ribosomal 30.7 1.5E+02 0.0033 23.6 5.5 35 233-267 20-56 (112)
145 PF11212 DUF2999: Protein of u 30.1 1.9E+02 0.0041 21.4 5.4 45 206-254 32-76 (82)
146 PF11212 DUF2999: Protein of u 29.4 2.4E+02 0.0051 20.9 6.0 53 206-262 4-56 (82)
147 PF09012 FeoC: FeoC like trans 28.5 62 0.0013 22.8 2.7 36 230-265 9-44 (69)
148 PLN00138 large subunit ribosom 27.1 1.8E+02 0.004 23.1 5.4 36 233-268 18-55 (113)
149 PF03874 RNA_pol_Rpb4: RNA pol 26.6 97 0.0021 24.1 3.8 51 206-260 62-114 (117)
150 PF14747 DUF4473: Domain of un 25.7 1.2E+02 0.0025 22.5 3.8 26 235-260 8-33 (82)
151 PF05379 Peptidase_C23: Carlav 24.9 1.6E+02 0.0035 22.3 4.6 54 205-263 6-59 (89)
152 cd05833 Ribosomal_P2 Ribosomal 24.7 2.3E+02 0.0049 22.4 5.5 36 232-267 17-54 (109)
153 cd04411 Ribosomal_P1_P2_L12p R 23.5 2.3E+02 0.005 22.2 5.3 35 233-267 17-53 (105)
154 PF06897 DUF1269: Protein of u 22.3 2.4E+02 0.0052 21.9 5.2 56 206-261 31-101 (102)
155 PF02556 SecB: Preprotein tran 22.2 1.3E+02 0.0028 24.5 3.9 37 87-123 107-143 (149)
156 PRK14908 glycyl-tRNA synthetas 21.7 99 0.0021 33.7 3.7 96 89-217 6-107 (1000)
157 PF05396 Phage_T7_Capsid: Phag 21.1 1.5E+02 0.0032 24.1 3.8 38 233-270 44-82 (123)
158 PF13875 DUF4202: Domain of un 21.1 1.2E+02 0.0025 26.5 3.4 30 233-262 87-116 (185)
159 PF08823 PG_binding_2: Putativ 20.3 1.9E+02 0.0041 21.1 4.0 33 234-266 17-58 (74)
No 1
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=2.5e-45 Score=358.13 Aligned_cols=221 Identities=71% Similarity=1.181 Sum_probs=192.2
Q ss_pred CCCCCCcccCCCCCCCccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccc
Q 024194 50 NGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129 (271)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~ 129 (271)
..+++++.+..+....+.+.|+++++|+||+||+|+++..+++|++.++++|++|||++|.||+||++++|..+.|+++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~ 126 (487)
T PLN02530 47 GGGRSGGTTAPPSVQEDGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEIT 126 (487)
T ss_pred ccccCCCCCCCCCCccccccccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccc
Confidence 44555555555544488889999999999999999999999999999999999999999999999999999987788888
Q ss_pred cccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-----
Q 024194 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT----- 204 (271)
Q Consensus 130 ~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~----- 204 (271)
++||+|.|++|+.++||||+|+|+||+++++....+.|+||||+|+|||+++++.||+|||+|+|+|+||.+++.
T Consensus 127 ~~~y~f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEv 206 (487)
T PLN02530 127 DQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAEL 206 (487)
T ss_pred cceEEEECCCCCEEecCCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHH
Confidence 999999999999999999999999999999876667999999999999999999999999999999999998864
Q ss_pred --HHHHHHHhCCCCc------------------------cchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHH
Q 024194 205 --VLQEVLRCHSIPE------------------------HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 258 (271)
Q Consensus 205 --ll~~~L~~lGi~~------------------------~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~ 258 (271)
++.++|+.+|+++ ..+..++..+|++++.+.+.+++.|...|++.+..+.|.++
T Consensus 207 i~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l 286 (487)
T PLN02530 207 LAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDV 286 (487)
T ss_pred HHHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5667777777752 22234566788999999999999999999999999999999
Q ss_pred HhcCCHhHHhcc
Q 024194 259 LSIKSLTELEGW 270 (271)
Q Consensus 259 l~~K~~~~l~~~ 270 (271)
+..++++.++++
T Consensus 287 ~~~~~~~~l~~~ 298 (487)
T PLN02530 287 LSLKSLDDLEAL 298 (487)
T ss_pred HhccCHHHHHHH
Confidence 987776665543
No 2
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-43 Score=328.65 Aligned_cols=197 Identities=35% Similarity=0.617 Sum_probs=183.8
Q ss_pred cccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC
Q 024194 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146 (271)
Q Consensus 67 ~~~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLR 146 (271)
.++++.+++|+||+||-|+++.++++|++.+.++|++||++.|+||+||-.+++..++|++. +.+|.+.|++|+.++||
T Consensus 54 ~~~k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLR 132 (518)
T KOG1936|consen 54 FKKKFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLR 132 (518)
T ss_pred cCcceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999886 88999999999999999
Q ss_pred CCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCC--CCCCCcceEEeEEEEEec-----CcHH---------------
Q 024194 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGV-----PAVT--------------- 204 (271)
Q Consensus 147 PD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~--~~Gr~REf~Q~gvEiiG~-----~~~~--------------- 204 (271)
||+|+|+||++|++.. ..+|.|.|+.|||.++| .+||+||||||++||.|. ++.+
T Consensus 133 YDLTVPfARylAmNki---~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Ig 209 (518)
T KOG1936|consen 133 YDLTVPFARYLAMNKI---TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIG 209 (518)
T ss_pred cccccHHHHHHHHccc---ccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCcc
Confidence 9999999999999843 57999999999999988 799999999999999993 2222
Q ss_pred ----------HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHH-hCCCCHHHHHHHHHHHhcCCHhHH
Q 024194 205 ----------VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK-SAGMSEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 205 ----------ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~-~lgLs~~~~~~L~~~l~~K~~~~l 267 (271)
++..+|+.||++++.|..||..+||+||.+|+.+++.|- +.||++|++++|.+++..++..+|
T Consensus 210 d~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL 283 (518)
T KOG1936|consen 210 DYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDEL 283 (518)
T ss_pred ceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHH
Confidence 899999999999999999999999999999999999985 599999999999999999998777
No 3
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-41 Score=323.80 Aligned_cols=148 Identities=39% Similarity=0.750 Sum_probs=140.4
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeC
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALR 146 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~---~~~~~y~f~D~~G~~laLR 146 (271)
|++++.|+||+||+|.++..+++|++.++++|++|||.+|.||+||+.++|.+++|++ +.++||.|.|++|+.++||
T Consensus 1 ~~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLR 80 (429)
T COG0124 1 MMKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALR 80 (429)
T ss_pred CCCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEec
Confidence 4678889999999999999999999999999999999999999999999999888887 6799999999999999999
Q ss_pred CCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCc
Q 024194 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPE 217 (271)
Q Consensus 147 PD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~ 217 (271)
||+|+|+||++++|....+.|+||||+|+|||||+||+||+|||+|+|+|+||.+++. ++.++|+++|+.+
T Consensus 81 pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~~ 158 (429)
T COG0124 81 PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIGG 158 (429)
T ss_pred ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999987777999999999999999999999999999999999999865 7788999999987
No 4
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=6.1e-41 Score=319.17 Aligned_cols=189 Identities=27% Similarity=0.416 Sum_probs=173.8
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCCh
Q 024194 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELT 150 (271)
Q Consensus 72 ~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T 150 (271)
.+++|+|++|++|+++..++++++.++++|++|||++|.||+||++++|..+.|+...+++|+|.|+ +|+.++||||+|
T Consensus 2 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T 81 (391)
T PRK12292 2 MWQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMT 81 (391)
T ss_pred CCCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCc
Confidence 3578999999999999999999999999999999999999999999999887777778899999999 999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchhhH
Q 024194 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFGKV 223 (271)
Q Consensus 151 ~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~~v 223 (271)
+|+||+++++....+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++. ++.++|+.+|+++..
T Consensus 82 ~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~~~~---- 157 (391)
T PRK12292 82 AQIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLPNFT---- 157 (391)
T ss_pred HHHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCCCeE----
Confidence 999999998765567899999999999999999999999999999999998865 788999999998532
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHHhcc
Q 024194 224 CIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGW 270 (271)
Q Consensus 224 ~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~~ 270 (271)
++.+|...++.+|+.+|++++..+.+.+++..||..+++++
T Consensus 158 ------i~i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 198 (391)
T PRK12292 158 ------LDLGHVGLFRALLEAAGLSEELEEVLRRALANKDYVALEEL 198 (391)
T ss_pred ------EEeccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 45689999999999999999999999999999998888764
No 5
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=4.1e-40 Score=313.64 Aligned_cols=188 Identities=20% Similarity=0.264 Sum_probs=168.9
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCCh
Q 024194 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELT 150 (271)
Q Consensus 72 ~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T 150 (271)
++++|+||+|++|+++..++++++.++++|++|||++|.||+||++|+|..+.|++..+++|+|.|+ +|+.++||||+|
T Consensus 6 ~~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T 85 (392)
T PRK12421 6 RWLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADIT 85 (392)
T ss_pred ccCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCC
Confidence 3578999999999999999999999999999999999999999999999887787777889999998 699999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchhhH
Q 024194 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFGKV 223 (271)
Q Consensus 151 ~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~~v 223 (271)
+|+||+++++.. .+.|+||||+|+|||+++++.||+|||+|+|+|+||.+++. ++.++|+.+|+++..
T Consensus 86 ~~iaR~~a~~~~-~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~~~~---- 160 (392)
T PRK12421 86 PQVARIDAHLLN-REGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVPALH---- 160 (392)
T ss_pred HHHHHHHHhhcC-CCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeE----
Confidence 999999887643 36799999999999999999999999999999999998865 778999999998632
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHHhcc
Q 024194 224 CIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGW 270 (271)
Q Consensus 224 ~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~~ 270 (271)
++.+|...++.+++.+|++++..+.|.+++..|+.++++++
T Consensus 161 ------l~ig~~~i~~~il~~l~l~~~~~~~l~~~l~kk~~~~l~~~ 201 (392)
T PRK12421 161 ------LDLGHVGIFRRLAELAGLSPEEEEELFDLLQRKALPELAEV 201 (392)
T ss_pred ------EEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 34588889999999899999888889999998888877653
No 6
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-40 Score=316.17 Aligned_cols=197 Identities=31% Similarity=0.545 Sum_probs=171.4
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhh--ccccccccEEEeeCCCCeEeeCC
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA--GEEIRDQLYCFEDRGNRRVALRP 147 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~--g~~~~~~~y~f~D~~G~~laLRP 147 (271)
|+.+++|+|++|++|.++..++++++.++++|++|||++|.||+||++|+|..+. ++.+.+++|+|.|++|+.++|||
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRp 80 (423)
T PRK12420 1 MMEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRY 80 (423)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccc
Confidence 6778999999999999999999999999999999999999999999999997653 34567889999999999999999
Q ss_pred CChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-----------------------
Q 024194 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT----------------------- 204 (271)
Q Consensus 148 D~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~----------------------- 204 (271)
|+|+|+||+++++. ..+.|+|+||+|+|||+++++.||+|||+|+|+|+||.+++.
T Consensus 81 D~T~~iaR~va~~~-~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~~~~i~ 159 (423)
T PRK12420 81 DLTIPFAKVVAMNP-NIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNLEVTIQ 159 (423)
T ss_pred cccHHHHHHHHhCc-CCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCCCEEEE
Confidence 99999999999874 346799999999999999999999999999999999988753
Q ss_pred -----HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHH
Q 024194 205 -----VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 205 -----ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l 267 (271)
++..+|+.||+++.....++..+|++++++++.+.+.|...|++++..+.|.+++..++...+
T Consensus 160 l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~ 227 (423)
T PRK12420 160 YNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSI 227 (423)
T ss_pred EcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhH
Confidence 455556666666555555677788999999999999999999999999999998866654333
No 7
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=1.2e-38 Score=320.10 Aligned_cols=190 Identities=29% Similarity=0.527 Sum_probs=167.6
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCC
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPEL 149 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~ 149 (271)
++.+++|+||+||+|.++..+++|++.++++|++|||++|+||+||++|+|..+.|++ .++||+|.|++|+.++||||+
T Consensus 324 ~~~~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged-~k~mY~f~D~gGr~LaLRPDl 402 (763)
T PLN02972 324 RRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED-SKLIYDLADQGGELCSLRYDL 402 (763)
T ss_pred hcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc-hhheEEEECCCCCEEEeCCCC
Confidence 5677999999999999999999999999999999999999999999999998877765 468999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEec-CcH----H--------------------
Q 024194 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV-PAV----T-------------------- 204 (271)
Q Consensus 150 T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~-~~~----~-------------------- 204 (271)
|+|+||+++++.. .|+|+||+|+|||+++|+.||+|||+|+|+||||. ++. |
T Consensus 403 TvPiAR~vA~n~~---~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~df~I~ 479 (763)
T PLN02972 403 TVPFARYVAMNGI---TSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIGTYEVK 479 (763)
T ss_pred hHHHHHHHHhCCC---CcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCCceEEE
Confidence 9999999998753 48999999999999999999999999999999997 332 2
Q ss_pred -----HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHH-HhCCCCHHHHHHHHHHHhcCC
Q 024194 205 -----VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 205 -----ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L-~~lgLs~~~~~~L~~~l~~K~ 263 (271)
++..+|+.||++++.+..++..+|++++.+++.+++.| +..|++++.++.|.+++..++
T Consensus 480 INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G 544 (763)
T PLN02972 480 LNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERG 544 (763)
T ss_pred eCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcC
Confidence 56666677777666666788889999999999997766 578999999999998887554
No 8
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-37 Score=296.25 Aligned_cols=149 Identities=25% Similarity=0.485 Sum_probs=135.6
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeCC
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRP 147 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~---~~~~~y~f~D~~G~~laLRP 147 (271)
...++|+||+|++|.++..++++++.++++|++|||++|.||+||++|+|..+.|++ ..++||+|.|++|+.++|||
T Consensus 2 ~~~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRp 81 (430)
T CHL00201 2 AKIQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRP 81 (430)
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCC
Confidence 345789999999999999999999999999999999999999999999998876654 35899999999999999999
Q ss_pred CChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccc
Q 024194 148 ELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHL 219 (271)
Q Consensus 148 D~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~ 219 (271)
|+|+|+||+++++.. ..+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++. ++.++|+.+|+++..
T Consensus 82 d~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~~~~ 161 (430)
T CHL00201 82 EGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVKNLI 161 (430)
T ss_pred CCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCCceE
Confidence 999999999888754 346799999999999999999999999999999999998865 788999999998743
No 9
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=5.7e-37 Score=280.27 Aligned_cols=162 Identities=19% Similarity=0.315 Sum_probs=144.8
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCC
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPEL 149 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~ 149 (271)
|.++++|+|++|++|+++..++++++.++++|++|||++|.||+||+++++.. ...++||+|.|++|+.++||||+
T Consensus 2 ~~~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~----~~~~~~y~~~D~~g~~l~LRpD~ 77 (281)
T PRK12293 2 ILEHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI----ADEKELIRFSDEKNHQISLRADS 77 (281)
T ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc----cchhceEEEECCCCCEEEECCcC
Confidence 34578999999999999999999999999999999999999999999999843 34688999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH----HHHHHHHhCCCCccchhhHHH
Q 024194 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT----VLQEVLRCHSIPEHLFGKVCI 225 (271)
Q Consensus 150 T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~----ll~~~L~~lGi~~~~~~~v~~ 225 (271)
|+|+||+++++.+..+.|+||||+|+|||+++ |||+|+|+|+||.+++. ++.++|+.+|++. .
T Consensus 78 T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~~lgl~~-~------ 144 (281)
T PRK12293 78 TLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFEELELEP-I------ 144 (281)
T ss_pred CHHHHHHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHHHcCCCC-E------
Confidence 99999999987655578999999999999963 89999999999999876 7789999999963 2
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCHHHH
Q 024194 226 IIDKIEKLPLDVIKNDLKSAGMSEAAI 252 (271)
Q Consensus 226 ~ldkl~~~~~~~i~~~L~~lgLs~~~~ 252 (271)
++.+|...++.+++.++++.+..
T Consensus 145 ----i~ig~~~i~~~~l~~~~~~~~~~ 167 (281)
T PRK12293 145 ----LQISNIKIPKLVAEILGLDIEVF 167 (281)
T ss_pred ----EEECCHHHHHHHHHHcCCCHHHH
Confidence 34589999999999999988664
No 10
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=1.6e-36 Score=281.07 Aligned_cols=179 Identities=29% Similarity=0.439 Sum_probs=161.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHH
Q 024194 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQ 159 (271)
Q Consensus 80 ~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~ 159 (271)
+|++|.++..++++++.++++|++|||++|+||+||++++|..+.| ...+++|+|.|++|+.++||||+|+|+||++++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~ 79 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVST 79 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-cchhceEEEECCCCCEEeecCcCcHHHHHHHHH
Confidence 6999999999999999999999999999999999999999987755 677899999999999999999999999999998
Q ss_pred cCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchhhHHHHHHhhhc
Q 024194 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFGKVCIIIDKIEK 232 (271)
Q Consensus 160 ~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~~v~~~ldkl~~ 232 (271)
+.+..+.|+|+||+|+|||+++++.||+|||+|+|+|+||.++.. ++.++|+.+|+++.. ++.
T Consensus 80 ~~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~~~~----------i~l 149 (314)
T TIGR00443 80 RLRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLKDFK----------IEL 149 (314)
T ss_pred hcccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeE----------EEe
Confidence 765567899999999999999999999999999999999998755 778889999987632 345
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHHhc
Q 024194 233 LPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG 269 (271)
Q Consensus 233 ~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~ 269 (271)
+|...++.+|+.+|++++..+.|.+++..|+..++++
T Consensus 150 ~~~~il~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~ 186 (314)
T TIGR00443 150 GHVGLVRALLEEAGLPEEAREALREALARKDLVALEE 186 (314)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 8888999999999999988889999998888877764
No 11
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=1.7e-36 Score=279.35 Aligned_cols=180 Identities=36% Similarity=0.605 Sum_probs=149.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHH
Q 024194 78 GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLV 157 (271)
Q Consensus 78 G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~ 157 (271)
||+|++|++++.++++++.++++|++|||++|.||+||+++++..+.|.. .+++|+|.|++|+.++||||+|+|+||++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~-~~~~~~~~D~~G~~l~LR~D~T~~iaR~~ 79 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED-SDNMYRFLDRSGRVLALRPDLTVPIARYV 79 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT-GGCSEEEECTTSSEEEE-SSSHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc-hhhhEEEEecCCcEeccCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999998765554 45899999999999999999999999999
Q ss_pred HHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHH-hCCCCccchhhHHHHHHh
Q 024194 158 IQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLR-CHSIPEHLFGKVCIIIDK 229 (271)
Q Consensus 158 a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~-~lGi~~~~~~~v~~~ldk 229 (271)
+++.. .+.|.|+||+|+|||+++++.|+.|||+|+|+|+||.++.+ ++.++|+ .+|+++..
T Consensus 80 a~~~~-~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~~~~---------- 148 (311)
T PF13393_consen 80 ARNLN-LPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLENFT---------- 148 (311)
T ss_dssp HHCCG-SSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSEE----------
T ss_pred HHhcC-cCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCCCcE----------
Confidence 99754 67899999999999999999999999999999999999865 6788897 88987633
Q ss_pred hhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHHhc
Q 024194 230 IEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG 269 (271)
Q Consensus 230 l~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~ 269 (271)
++.+|...++.+++.+|++++..+.+.+++..++..++++
T Consensus 149 i~i~h~~i~~~il~~~gl~~~~~~~l~~~l~~~~~~~~~~ 188 (311)
T PF13393_consen 149 IRINHTGILDAILEHLGLPEDLRRELLEALDKKDLSELKE 188 (311)
T ss_dssp EEEEEHHHHHHHHHHTTHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EEEcCchhhHHHHhhcCCChhhhhhhhhheeccccccchh
Confidence 3447777888888888888888888888887777666554
No 12
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-35 Score=274.22 Aligned_cols=188 Identities=26% Similarity=0.403 Sum_probs=172.0
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T 150 (271)
+++++|.|++|.+|.+++..++|++.+.+.|.+|||+.|+||++|++|++....|+....++|++.|..|+.++||||+|
T Consensus 1 ~~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T 80 (390)
T COG3705 1 MTWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFT 80 (390)
T ss_pred CCCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEeccccc
Confidence 46789999999999999999999999999999999999999999999999877677778999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchhhH
Q 024194 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFGKV 223 (271)
Q Consensus 151 ~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~~v 223 (271)
+||||.+++.... .|.|+||.|+|||..+...|+..||+|+|+|++|.+++. ++..+|+.+|+.+.+
T Consensus 81 ~pVaR~~~~~~~~--~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl~~~~---- 154 (390)
T COG3705 81 IPVARIHATLLAG--TPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKALGLADLK---- 154 (390)
T ss_pred HHHHHHHHHhcCC--CCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCCcCeE----
Confidence 9999999998764 899999999999998656677789999999999998754 677899999988843
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHHhcc
Q 024194 224 CIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGW 270 (271)
Q Consensus 224 ~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~~ 270 (271)
+..+|...++.++..+++++...++|.+++..||..+++.+
T Consensus 155 ------l~LG~~gif~all~~~~l~~~~~~~L~~a~~~k~~~~~~~~ 195 (390)
T COG3705 155 ------LELGHAGIFRALLAAAGLPGGWRARLRRAFGDKDLLGLELL 195 (390)
T ss_pred ------EEeccHHHHHHHHHHcCCChhHHHHHHHHHhccchhhHHHH
Confidence 45699999999999999999999999999999999988754
No 13
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=8.4e-34 Score=269.97 Aligned_cols=187 Identities=33% Similarity=0.609 Sum_probs=158.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeCCCCh
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPELT 150 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~---~~~~~y~f~D~~G~~laLRPD~T 150 (271)
++|+|++|++|.++..++++++.++++|++|||++|.||+||++++|..+.|+. ..+++|+|.|++|+.++||||+|
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 479999999999999999999999999999999999999999999998765543 34789999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchh--
Q 024194 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFG-- 221 (271)
Q Consensus 151 ~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~-- 221 (271)
+|+||+++++....+.|+|+||+|+|||+++++.||.|||+|+|+|+||.++.. ++.++|+.+|+++..+.
T Consensus 81 ~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~~~~i~i~ 160 (397)
T TIGR00442 81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIKDFTLEIN 160 (397)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCCceEEEec
Confidence 999999998866667899999999999999999999999999999999998864 77899999999753221
Q ss_pred -------------hHHHHHHh-hhcCCHHHHHHHHHh-CCCCHHHHHHHHHHHh
Q 024194 222 -------------KVCIIIDK-IEKLPLDVIKNDLKS-AGMSEAAIEELLRVLS 260 (271)
Q Consensus 222 -------------~v~~~ldk-l~~~~~~~i~~~L~~-lgLs~~~~~~L~~~l~ 260 (271)
.+...+++ .++...+.+..++.. ++++++..+.+..++.
T Consensus 161 ~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (397)
T TIGR00442 161 SLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLK 214 (397)
T ss_pred CcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHh
Confidence 23344555 455566666666654 6777777777777654
No 14
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-33 Score=268.07 Aligned_cols=146 Identities=33% Similarity=0.647 Sum_probs=134.7
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCCCCeEeeC
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRGNRRVALR 146 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~---~~~~y~f~D~~G~~laLR 146 (271)
|+++++|+|++||+|.++..++++++.++++|++|||++|.||+||++++|..+.|+.. .++||+|.|++|+.++||
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LR 80 (412)
T PRK00037 1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLR 80 (412)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEec
Confidence 67789999999999999999999999999999999999999999999999987656554 688999999999999999
Q ss_pred CCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCcc
Q 024194 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEH 218 (271)
Q Consensus 147 PD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~ 218 (271)
||+|+|+||+++++.. .|+|+||+|+|||+++++.||.|||+|+|+|+||.++.. ++.++|+.+|+++.
T Consensus 81 pd~T~~~ar~~~~~~~---~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~~~ 156 (412)
T PRK00037 81 PEGTAPVVRAVIEHKL---QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLKGL 156 (412)
T ss_pred CCCcHHHHHHHHhCCC---CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCCce
Confidence 9999999999998643 899999999999999999999999999999999998743 77899999999864
No 15
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.2e-32 Score=260.77 Aligned_cols=162 Identities=19% Similarity=0.273 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCCC
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~P 167 (271)
...+++++.++++|++|||++|.||+||++++|..++|++..+++|+|.|++|+.++||||+|+|+||+++++. .+.|
T Consensus 5 ~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~--~~~p 82 (373)
T PRK12295 5 SASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATA--GGEP 82 (373)
T ss_pred hhHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcC--CCCC
Confidence 45679999999999999999999999999999988778878889999999999999999999999999988862 4689
Q ss_pred eEEEEEeceeecCCCCCCCCcceEEeEEEEEecCc-H----H---HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHH
Q 024194 168 LKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA-V----T---VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIK 239 (271)
Q Consensus 168 ~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~-~----~---ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~ 239 (271)
.||||+|+|||++ .|++|||+|+|+|+||..+ . + ++.++|+.+|+++.. ++.+|.+.++
T Consensus 83 ~R~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~~~~----------i~ig~~~il~ 149 (373)
T PRK12295 83 ARYAYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPGDLE----------VRLGDVGLFA 149 (373)
T ss_pred eEEEEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCCceE----------EEeCCHHHHH
Confidence 9999999999998 6899999999999999643 2 2 778999999998633 4569999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHhcCCH
Q 024194 240 NDLKSAGMSEAAIEELLRVLSIKSL 264 (271)
Q Consensus 240 ~~L~~lgLs~~~~~~L~~~l~~K~~ 264 (271)
.+++.+|++++..+.|+.+++.|+.
T Consensus 150 ~ll~~l~l~~~~~~~l~~~i~kk~~ 174 (373)
T PRK12295 150 ALVDALGLPPGWKRRLLRHFGRPRS 174 (373)
T ss_pred HHHHHcCCCHHHHHHHHHHHhccch
Confidence 9999999999999999999999986
No 16
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=100.00 E-value=1.4e-32 Score=248.09 Aligned_cols=175 Identities=35% Similarity=0.592 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
+++.++++++.++++|++|||++|.||++|+.++|..+.++...+++|+|.|++|+.++||||+|+|+||+++++....+
T Consensus 1 ~~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~ 80 (261)
T cd00773 1 EAALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLP 80 (261)
T ss_pred ChHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCC
Confidence 46789999999999999999999999999999999776556677899999999999999999999999999998765457
Q ss_pred CCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHH
Q 024194 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVI 238 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i 238 (271)
.|+|+||+|+|||+++++.|+.|||+|+|+|+||.++.. ++.++|+.+|+++.. ++.++...+
T Consensus 81 ~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~~~~----------i~l~~~~i~ 150 (261)
T cd00773 81 LPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLKDFQ----------IKINHRGIL 150 (261)
T ss_pred CCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCCceE----------EEECCHHHH
Confidence 899999999999999999999999999999999998764 778899999987633 455899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhcCCHhHHhcc
Q 024194 239 KNDLKSAGMSEAAIEELLRVLSIKSLTELEGW 270 (271)
Q Consensus 239 ~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~~ 270 (271)
+.+++.++++++....|.+.++.+.+++|+++
T Consensus 151 ~~l~~~~~~~~~~~~~l~~~l~~~~l~~l~~l 182 (261)
T cd00773 151 DGIAGLLEDREEYIERLIDKLDKEALAHLEKL 182 (261)
T ss_pred HHHhhccCCCHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999988766666653
No 17
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.96 E-value=2.5e-28 Score=222.13 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHcCCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
+..-.++++++.++++|++|||++|.||+||++|++.. .++.....+++++ |.+|+.++||||+|+||||+++++.
T Consensus 5 ~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~-~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~-- 81 (272)
T PRK12294 5 EQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQL-NHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP-- 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhc-cccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC--
Confidence 45567899999999999999999999999999999843 3444555555555 5699999999999999999998753
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC--cHH----HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHH
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP--AVT----VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDV 237 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~--~~~----ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~ 237 (271)
..|.|+||+|+|||+++ +++|+|+|+||.+ +.. ++.+++..+|..+..+ ++.+|++.
T Consensus 82 -~~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~e~l~la~~~l~~~g~~~~~~---------i~lGh~~~ 144 (272)
T PRK12294 82 -TAATKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQQSFKLFIQFIQQQLRDNVHF---------VVLGHYQL 144 (272)
T ss_pred -CCCceEEEeccEeccCC-------CcceeceEEECCCchhHHHHHHHHHHHHHHhCCCCCcE---------EEeccHHH
Confidence 24679999999999874 4899999999943 222 6678888887765222 23589999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhcCCHhHHhcc
Q 024194 238 IKNDLKSAGMSEAAIEELLRVLSIKSLTELEGW 270 (271)
Q Consensus 238 i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~~ 270 (271)
++.+++. +++.++|++++..||+++++++
T Consensus 145 ~~~l~~~----~~~~~~l~~~l~~Kn~~~l~~~ 173 (272)
T PRK12294 145 LDALLDK----SLQTPDILSMIEERNLSGLVTY 173 (272)
T ss_pred HHHHHhC----HHHHHHHHHHHHhcCHHHHHHH
Confidence 9999984 5778889999999999999875
No 18
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=2.7e-27 Score=237.88 Aligned_cols=145 Identities=22% Similarity=0.330 Sum_probs=129.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
+.|+|++||+|.++..+++|++.+++++.+|||++|.||+||+.++|..+ |+ ...++||+|.|++|+.++|||+.|+
T Consensus 257 ~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~-g~~~~~~~~my~~~d~~~~~~~LRP~~~~ 335 (638)
T PRK00413 257 EEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETS-GHWDHYRENMFPTTESDGEEYALKPMNCP 335 (638)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhc-CChhhhhhccceeecCCCcEEEEecCCcH
Confidence 56799999999999999999999999999999999999999999999874 63 3478999999999999999999999
Q ss_pred HHHHHHHHcCCC-CCCCeEEEEEeceeecCCCC--CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCc
Q 024194 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 152 ~iAR~~a~~~~~-~~~P~K~yyig~VfR~e~~~--~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~ 217 (271)
+++|+++++... .++|+|+||+|+|||+|+++ .| |.|||+|+|+|+||.++.. ++.++|+.+|+++
T Consensus 336 ~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~~ 415 (638)
T PRK00413 336 GHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFED 415 (638)
T ss_pred HHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 999999987654 47899999999999999886 35 9999999999999986632 6778999999986
Q ss_pred cc
Q 024194 218 HL 219 (271)
Q Consensus 218 ~~ 219 (271)
..
T Consensus 416 ~~ 417 (638)
T PRK00413 416 YE 417 (638)
T ss_pred EE
Confidence 43
No 19
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=4.3e-26 Score=226.82 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=129.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
..++|++||+|.+++.++.|++.+++++.++||++|.||+||+.++|.. +|+ ...++||+|.|.+|+.++|||+.|+
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~~~~~LRP~~~~ 271 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDEEEYYLKPMNCP 271 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCCceEEEecCCCH
Confidence 3589999999999999999999999999999999999999999999987 465 3568999999999999999999999
Q ss_pred HHHHHHHHcCCC-CCCCeEEEEEeceeecCCCC----CCCCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCc
Q 024194 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT----RGRRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 152 ~iAR~~a~~~~~-~~~P~K~yyig~VfR~e~~~----~Gr~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~ 217 (271)
+++|+++++... .++|+|+||+|+|||+|+++ .+|.|||+|+|+|+||.++.. ++.++|+.+|+++
T Consensus 272 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~ 351 (575)
T PRK12305 272 GHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKD 351 (575)
T ss_pred HHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 999999986543 47899999999999999875 349999999999999986643 6778999999986
Q ss_pred cc
Q 024194 218 HL 219 (271)
Q Consensus 218 ~~ 219 (271)
..
T Consensus 352 ~~ 353 (575)
T PRK12305 352 YY 353 (575)
T ss_pred EE
Confidence 33
No 20
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.91 E-value=2.9e-24 Score=197.95 Aligned_cols=143 Identities=24% Similarity=0.351 Sum_probs=124.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
.++|++||+|.++.+++.|++.++++++++||++|.||++++.++|..+ |+. ..++||++. .+|+.++|||+.|++
T Consensus 18 ~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-g~~~~~~~~my~~~-~~~~~l~LRP~~~~~ 95 (298)
T cd00771 18 AGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETS-GHWDHYRENMFPFE-EEDEEYGLKPMNCPG 95 (298)
T ss_pred CCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhC-CCccccccCceEec-cCCceEEEcccCCHH
Confidence 6889999999999999999999999999999999999999999999873 542 468899994 577899999999999
Q ss_pred HHHHHHHcCC-CCCCCeEEEEEeceeecCCCC----CCCCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCcc
Q 024194 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERMT----RGRRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPEH 218 (271)
Q Consensus 153 iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~----~Gr~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~~ 218 (271)
++++++.... ..++|+|+||+|+|||+|.++ .+|.|||+|.|+++||.++.. ++.++++.+|++..
T Consensus 96 ~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~~ 175 (298)
T cd00771 96 HCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDY 175 (298)
T ss_pred HHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCcE
Confidence 9999987543 357999999999999999764 258999999999999876532 67789999999864
Q ss_pred c
Q 024194 219 L 219 (271)
Q Consensus 219 ~ 219 (271)
.
T Consensus 176 ~ 176 (298)
T cd00771 176 K 176 (298)
T ss_pred E
Confidence 3
No 21
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.91 E-value=7.5e-25 Score=197.72 Aligned_cols=144 Identities=20% Similarity=0.314 Sum_probs=123.1
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCCh
Q 024194 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELT 150 (271)
Q Consensus 73 ~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRPD~T 150 (271)
.+.++|++||+|.++++++.|++.++++++++||++|.||+|++.++|..+ |+ ...++||++.|.+|+.++|||+.+
T Consensus 17 ~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~s-g~~~~~~~emy~~~d~~~~~l~LrPt~e 95 (255)
T cd00779 17 RQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKES-GRWDAYGPELLRLKDRHGKEFLLGPTHE 95 (255)
T ss_pred ccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc-CCccccCcccEEEecCCCCeEEEecCCc
Confidence 346899999999999999999999999999999999999999999999764 65 356899999999999999999966
Q ss_pred HHHHHHHHHcCC-CCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHHHHHHhCCCC
Q 024194 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQEVLRCHSIP 216 (271)
Q Consensus 151 ~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~~~L~~lGi~ 216 (271)
++++-+++.... ..++|+|+||+|+|||+| +++.| |.|||+|+|+++||.+..+ ++.++|+.||++
T Consensus 96 ~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~ 175 (255)
T cd00779 96 EVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLP 175 (255)
T ss_pred HHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 555544443221 246899999999999999 99999 9999999999999997533 467889999996
Q ss_pred c
Q 024194 217 E 217 (271)
Q Consensus 217 ~ 217 (271)
-
T Consensus 176 ~ 176 (255)
T cd00779 176 F 176 (255)
T ss_pred E
Confidence 3
No 22
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.91 E-value=6.8e-24 Score=210.82 Aligned_cols=143 Identities=21% Similarity=0.269 Sum_probs=125.7
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCCh
Q 024194 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELT 150 (271)
Q Consensus 73 ~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T 150 (271)
.+.|+|++||+|.+++.+++|++.+++.++++||++|.||+|++.++|..+ |.. ..++||+|.|++|+.++|||+.+
T Consensus 33 ~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~s-g~~~~~~~emf~~~d~~~~~l~LrPt~e 111 (565)
T PRK09194 33 RKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQES-GRWEEYGPELLRLKDRHGRDFVLGPTHE 111 (565)
T ss_pred cccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhc-CCccccchhceEEecCCCCEEEECCCCh
Confidence 457899999999999999999999999999999999999999999999764 532 46789999999999999999888
Q ss_pred HHHHHHHHHcCC-CCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHHHHHHhCCCC
Q 024194 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQEVLRCHSIP 216 (271)
Q Consensus 151 ~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~~~L~~lGi~ 216 (271)
..++.++..... +.++|+|+||+++|||+| +++.| |.|||+|.|+++||.+... ++.++|+.||++
T Consensus 112 ~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~ 191 (565)
T PRK09194 112 EVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLD 191 (565)
T ss_pred HHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 877777665543 347999999999999999 99999 9999999999999986533 457899999985
No 23
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.91 E-value=4.2e-24 Score=210.70 Aligned_cols=182 Identities=20% Similarity=0.250 Sum_probs=146.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
..++|+++|+|.++.+++.|++.+++++.++||++|.||+++..++|.. +|+. ..++||.+ |.+|+.++|||+.|+
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~-SGh~~~y~~~mf~~-~~~~e~~~LrPm~cp 232 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKI-SGHYTLYRDKLIVF-NMEGDEYGVKPMNCP 232 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhh-ccccccchhhccee-eccCceEEeccCCCH
Confidence 4689999999999999999999999999999999999999999999987 5876 67899988 888999999999999
Q ss_pred HHHHHHHHcCCC-CCCCeEEEEEeceeecCCCCC----CCCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCc
Q 024194 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTR----GRRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 152 ~iAR~~a~~~~~-~~~P~K~yyig~VfR~e~~~~----Gr~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~ 217 (271)
+++++++.+..+ +++|+|+|++|+|||+|.++. +|.|||+|.+++|||.++.. ++.++++.+|++.
T Consensus 233 ~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~ 312 (545)
T PRK14799 233 AHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKD 312 (545)
T ss_pred HHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999987654 489999999999999998876 79999999999999998754 5778999999973
Q ss_pred cchhhHH--H---HH--Hh-hhcCCHHHHHHHHHhCCCCHHHHHHHHHH
Q 024194 218 HLFGKVC--I---II--DK-IEKLPLDVIKNDLKSAGMSEAAIEELLRV 258 (271)
Q Consensus 218 ~~~~~v~--~---~l--dk-l~~~~~~~i~~~L~~lgLs~~~~~~L~~~ 258 (271)
..+.... + .+ +. .++.. +.+++.|+++|++.+..+....+
T Consensus 313 ~~~~i~ls~Rpe~~~G~~~~wdka~-~~l~~~L~~~gl~~~~~~g~gaf 360 (545)
T PRK14799 313 DDIKPYLSTRPDESIGSDELWEKAT-NALISALQESGLKFGIKEKEGAF 360 (545)
T ss_pred ccEEEEEEcChhhhcCCHHHHHHHH-HHHHHHHHHcCCCeEEecceecc
Confidence 2222100 0 00 00 12222 55667777788776554443333
No 24
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.90 E-value=1.3e-23 Score=208.61 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=125.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
.++|+.||+|.++..++.|++.+++++.++||++|.||+|++.++|... |.. ..++||+|.|++|+.++|||+.|++
T Consensus 188 ~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~~~~~~~emy~~~d~~~~~~~LrP~~~~~ 266 (563)
T TIGR00418 188 IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEIS-GHWDNYKERMFPFTELDNREFMLKPMNCPG 266 (563)
T ss_pred cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc-CCcccchhhcceeccCCCceEEEecCCCHH
Confidence 3899999999999999999999999999999999999999999999874 533 5789999999999999999999999
Q ss_pred HHHHHHHcCCC-CCCCeEEEEEeceeecCCCC--C--CCCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCcc
Q 024194 153 LARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--R--GRRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPEH 218 (271)
Q Consensus 153 iAR~~a~~~~~-~~~P~K~yyig~VfR~e~~~--~--Gr~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~~ 218 (271)
++|+++.+... .++|+|+||+|+|||+|..+ . +|.|||+|.|+|+||.+... ++.++++.+|++..
T Consensus 267 i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~~~ 346 (563)
T TIGR00418 267 HFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFD 346 (563)
T ss_pred HHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 99999987643 46899999999999999443 2 39999999999999984211 67789999999863
No 25
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.90 E-value=4.1e-23 Score=187.42 Aligned_cols=147 Identities=23% Similarity=0.300 Sum_probs=127.4
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCCC----C
Q 024194 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRGN----R 141 (271)
Q Consensus 69 ~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~---~~~~y~f~D~~G----~ 141 (271)
.+++..+++|+.+|+|.+++++++|++.+++.++++||++|.||++++.++|. ++|+.. .+++|.+.|.+| +
T Consensus 14 g~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~ 92 (264)
T cd00772 14 ELADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEE 92 (264)
T ss_pred CCccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCc
Confidence 34555668999999999999999999999999999999999999999999995 456552 368999999877 8
Q ss_pred eEeeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHH
Q 024194 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQ 207 (271)
Q Consensus 142 ~laLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~ 207 (271)
.++|||+.|++++++++.... ..++|+|+||+++|||+| ++..| |.|||+|.++++|+.+..+ +..
T Consensus 93 ~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~ 172 (264)
T cd00772 93 DFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYA 172 (264)
T ss_pred eEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887643 357999999999999999 87788 9999999999999865533 457
Q ss_pred HHHHhCC-CC
Q 024194 208 EVLRCHS-IP 216 (271)
Q Consensus 208 ~~L~~lG-i~ 216 (271)
++++.+| ++
T Consensus 173 ~i~~~l~~lp 182 (264)
T cd00772 173 EIARDLAAID 182 (264)
T ss_pred HHHHhcCCcc
Confidence 8889999 55
No 26
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.90 E-value=3.1e-23 Score=205.88 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=124.1
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCC--
Q 024194 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPE-- 148 (271)
Q Consensus 73 ~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD-- 148 (271)
.+.|+|+++|+|.+++.+++|++.+++.+.++||++|.+|+|++.++|..+ |.. ..++||+|.|++|+.++|||+
T Consensus 33 ~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~s-g~~~~~~~emf~~~dr~~~~l~LrPT~E 111 (568)
T TIGR00409 33 RRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQES-GRWDTYGPELLRLKDRKGREFVLGPTHE 111 (568)
T ss_pred cccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhc-CCCCccchhcEEEecCCCCEEEEcCCCc
Confidence 467899999999999999999999999999999999999999999999764 432 467899999999999999997
Q ss_pred --ChHHHHHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHHHHHHhC
Q 024194 149 --LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQEVLRCH 213 (271)
Q Consensus 149 --~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~~~L~~l 213 (271)
+|..+++.+.+. .++|+|+||+++|||+| +|+.| |.|||+|.++++||.+... +..++|+.|
T Consensus 112 e~~t~~~~~~i~sy---r~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 112 EVITDLARNEIKSY---KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred HHHHHHHHHHHhhc---cccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 787777666643 35999999999999999 99999 9999999999999997543 357899999
Q ss_pred CCC
Q 024194 214 SIP 216 (271)
Q Consensus 214 Gi~ 216 (271)
|++
T Consensus 189 gL~ 191 (568)
T TIGR00409 189 GLD 191 (568)
T ss_pred CCc
Confidence 996
No 27
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.90 E-value=2.6e-23 Score=183.62 Aligned_cols=130 Identities=28% Similarity=0.463 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhh-ccccccccEEEeeCC----CCeEeeCCCChHHHHHHHHHcC
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA-GEEIRDQLYCFEDRG----NRRVALRPELTPSLARLVIQKG 161 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~-g~~~~~~~y~f~D~~----G~~laLRPD~T~~iAR~~a~~~ 161 (271)
+.+++.|++.+++.|.++||++|.||++++.++|.... ++...++||++.|.+ |+.++||||.|++++|+++...
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 57899999999999999999999999999999997642 344678999999987 8999999999999999999865
Q ss_pred CC-CCCCeEEEEEeceeecCCCC---CCCCcceEEeEEEEEecC--cHH-------HHHHHHHhCCCC
Q 024194 162 KS-VSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDIIGVP--AVT-------VLQEVLRCHSIP 216 (271)
Q Consensus 162 ~~-~~~P~K~yyig~VfR~e~~~---~Gr~REf~Q~gvEiiG~~--~~~-------ll~~~L~~lGi~ 216 (271)
.. .++|+|+||+|+|||+|.++ .+|.|||+|.|+|+||.+ +.+ ++.++|+.+|++
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~ 149 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLP 149 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 44 57999999999999999776 569999999999999998 332 677889999985
No 28
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.88 E-value=1.8e-22 Score=182.07 Aligned_cols=136 Identities=22% Similarity=0.271 Sum_probs=115.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcC--CeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh-
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG--FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT- 150 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~G--y~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T- 150 (271)
..++|++||+|.+++++++|++.+++.+.++| |++|.||++++.++|..+.|.. |.+++.++||||+|
T Consensus 19 ~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~---------d~~~~~~~Lrp~~~~ 89 (254)
T cd00774 19 GGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV---------ESGGNLGYLRPETAQ 89 (254)
T ss_pred cChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc---------CCCCcccccCCcccc
Confidence 45889999999999999999999999999996 9999999999997776543431 55678899999999
Q ss_pred ---HHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCC---CCCcceEEeEEEEEecCcHH---------HHHHHHHhCCC
Q 024194 151 ---PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTR---GRRREHYQWNMDIIGVPAVT---------VLQEVLRCHSI 215 (271)
Q Consensus 151 ---~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~---Gr~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi 215 (271)
++++|.+..+. .++|+|+||+|+|||+|.++. +|.|||+|+|+|+||.++.. +...++..+|+
T Consensus 90 ~~~~~~~~~~~~~~--~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~ 167 (254)
T cd00774 90 GIFVNFKNLLEFNR--RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQ 167 (254)
T ss_pred hHHHHHHHHHHHhC--CCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCC
Confidence 78999887654 379999999999999997665 69999999999999987532 56788999999
Q ss_pred Cccch
Q 024194 216 PEHLF 220 (271)
Q Consensus 216 ~~~~~ 220 (271)
....+
T Consensus 168 ~~~~~ 172 (254)
T cd00774 168 SPENL 172 (254)
T ss_pred Cccce
Confidence 76543
No 29
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=6.8e-22 Score=199.07 Aligned_cols=141 Identities=24% Similarity=0.388 Sum_probs=125.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
+..+|++||+|.+...++.|++.+++.+.++||++|.||+|++.++|... |+ ...++|| +.|.+|+.++|||+.|+
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~s-G~~~~~~~emy-~~d~~~~~~~LrP~~~~ 338 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERS-GHWDHYKDNMY-FSEVDNKSFALKPMNCP 338 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhc-CChhhhhhhcC-eecCCCcEEEEccCCCH
Confidence 35789999999999999999999999999999999999999999999874 65 3578999 88999999999999999
Q ss_pred HHHHHHHHcCCC-CCCCeEEEEEeceeecCCCCC--C--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCC
Q 024194 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTR--G--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIP 216 (271)
Q Consensus 152 ~iAR~~a~~~~~-~~~P~K~yyig~VfR~e~~~~--G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~ 216 (271)
+++|++.....+ .++|+|+||+|+|||+|+++. | |.|||+|.|+++||.++.. ++.++++.+|++
T Consensus 339 ~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl~ 417 (639)
T PRK12444 339 GHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFE 417 (639)
T ss_pred HHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999765543 478999999999999998754 7 9999999999999986532 567899999995
No 30
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.84 E-value=5.4e-21 Score=184.89 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=124.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCC---C
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRP---E 148 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRP---D 148 (271)
+.++|+.+|+|.+++++++|++.+++.+.++||++|.||++++.++|..+ |+ ...++||++.|.+++.++||| +
T Consensus 34 ~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~s-g~~~~~~~emf~~~d~~~~~~~L~Pt~e~ 112 (439)
T PRK12325 34 QQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRES-GRYDAYGKEMLRIKDRHDREMLYGPTNEE 112 (439)
T ss_pred ccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhc-CCccccchhheEEecCCCCEEEEcCCCcH
Confidence 45899999999999999999999999999999999999999999999754 65 357899999999999999999 6
Q ss_pred ChHHHHHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHHHHHHhCCC
Q 024194 149 LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQEVLRCHSI 215 (271)
Q Consensus 149 ~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~~~L~~lGi 215 (271)
.+.+++|....+. .++|+|+||+|+|||+| +++.| |.|||+|-++.+|+.+... ++.++++.||+
T Consensus 113 ~~~~~~~~~~~sy--rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl 190 (439)
T PRK12325 113 MITDIFRSYVKSY--KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGL 190 (439)
T ss_pred HHHHHHHHHhhhc--hhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6778888777654 46999999999999999 88778 9999999999999876432 66788999998
Q ss_pred Cc
Q 024194 216 PE 217 (271)
Q Consensus 216 ~~ 217 (271)
+.
T Consensus 191 ~~ 192 (439)
T PRK12325 191 KA 192 (439)
T ss_pred ce
Confidence 74
No 31
>PLN02908 threonyl-tRNA synthetase
Probab=99.83 E-value=1.9e-20 Score=189.81 Aligned_cols=141 Identities=21% Similarity=0.282 Sum_probs=126.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
+.++|+++|+|.++++++.|.+.+++.+.++||++|.||.+++.++|.. +|+. ..++||.| |.+++.++|||+.|+
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sGh~~~~~~~mf~~-~~~~~~~~Lrp~~~~ 385 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWET-SGHAAHYKENMFVF-EIEKQEFGLKPMNCP 385 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhccEE-ecCCeeEEEcCCCcH
Confidence 4678999999999999999999999999999999999999999999986 6876 67899998 678899999999999
Q ss_pred HHHHHHHHcCCC-CCCCeEEEEEeceeecCCC----CCCCCcceEEeEEEEEecCcH-H--------HHHHHHHhCCCC
Q 024194 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERM----TRGRRREHYQWNMDIIGVPAV-T--------VLQEVLRCHSIP 216 (271)
Q Consensus 152 ~iAR~~a~~~~~-~~~P~K~yyig~VfR~e~~----~~Gr~REf~Q~gvEiiG~~~~-~--------ll~~~L~~lGi~ 216 (271)
+++++++..... .++|+|+|++|+|||+|.+ +.+|.|||+|.++++|+.++. . ++.++++.+|++
T Consensus 386 ~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~ 464 (686)
T PLN02908 386 GHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFT 464 (686)
T ss_pred HHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999999876653 3799999999999999977 455999999999999999543 2 677899999995
No 32
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.82 E-value=1.1e-19 Score=173.14 Aligned_cols=125 Identities=21% Similarity=0.328 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCccc---chHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLE---SEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E---~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.....+++.++++|..+||+||.||+|+ +++.+....+..+.+++|++. +.++||||+|++++|+++.+....
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e----e~lvLRPdLTPsLaR~La~N~~~l 315 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----KNFCLRPMLAPNLYNYLRKLDRAL 315 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec----CceEecccCHHHHHHHHHHhhhhc
Confidence 5579999999999999999999999995 444443333344567899863 369999999999999998754445
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-----HHHHHHHhCCCC
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-----VLQEVLRCHSIP 216 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-----ll~~~L~~lGi~ 216 (271)
+.|+|+||+|+|||+|.++.||.+||+|+|++++|.+... ++.++|+.+|++
T Consensus 316 ~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~LGId 372 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHLEID 372 (453)
T ss_pred cCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCc
Confidence 7899999999999999999999999999999999987644 788999999985
No 33
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.80 E-value=1.6e-19 Score=163.53 Aligned_cols=147 Identities=22% Similarity=0.233 Sum_probs=117.5
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCC----eE
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNR----RV 143 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~----~l 143 (271)
+++.+.++|+.+|+|.++++++.|++.+++.+.++||++|.||++++.++|..++|.. ..++||++.|.+++ .+
T Consensus 15 ~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~ 94 (261)
T cd00778 15 LIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPL 94 (261)
T ss_pred CcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcE
Confidence 4555678899999999999999999999999999999999999999999986544543 36789999997654 79
Q ss_pred eeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCCC---CCCCcceEEeEEEE-EecCcHH---------HHHHH
Q 024194 144 ALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDI-IGVPAVT---------VLQEV 209 (271)
Q Consensus 144 aLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~---~Gr~REf~Q~gvEi-iG~~~~~---------ll~~~ 209 (271)
+|||+..++++-+++.... +.++|+|+|++++|||+|..+ .+|.|||+|.++.. +..++.. +..++
T Consensus 95 ~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i 174 (261)
T cd00778 95 ALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEF 174 (261)
T ss_pred EEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHH
Confidence 9999955555544443321 346999999999999999655 34899999999975 4443321 67789
Q ss_pred HHhC-CCC
Q 024194 210 LRCH-SIP 216 (271)
Q Consensus 210 L~~l-Gi~ 216 (271)
++.+ |++
T Consensus 175 ~~~llgl~ 182 (261)
T cd00778 175 YEDLLAIP 182 (261)
T ss_pred HHHhCCCe
Confidence 9998 987
No 34
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.78 E-value=2.8e-18 Score=145.80 Aligned_cols=128 Identities=33% Similarity=0.522 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCC--C
Q 024194 89 LRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGK--S 163 (271)
Q Consensus 89 ~~~~i~~~l~~vf~-~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~--~ 163 (271)
++++|++.+++.+. ++||++|.+|+|.+.++|.. +|.. ..+++|++.|.+++.++|||+.+++++.++..... .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeecccccEEeccccccceeeeecceeeecc
Confidence 46889999999999 99999999999999999987 4653 45779999999889999999999999999987654 2
Q ss_pred CCCCeEEEEEeceeecC-CCCC--CCCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCc
Q 024194 164 VSLPLKWFAVGQCWRYE-RMTR--GRRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e-~~~~--Gr~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~ 217 (271)
.++|+|+|++|+|||+| ++.. .|.|||+|.++++||.++.. ++..+++.||+++
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~ 145 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEP 145 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGC
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCce
Confidence 46999999999999999 6654 48999999999999999322 6778899999944
No 35
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.77 E-value=8e-19 Score=171.18 Aligned_cols=147 Identities=24% Similarity=0.343 Sum_probs=123.6
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCC----CC
Q 024194 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRG----NR 141 (271)
Q Consensus 69 ~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~---~~~~y~f~D~~----G~ 141 (271)
.+++...++|+++|+|.+..+++.|++.+++.++++||++|.||+|++.++|... |+.+ .++||.+.|.+ ++
T Consensus 20 ~li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~-~~h~~~f~~e~f~v~~~g~~~~~e 98 (472)
T TIGR00408 20 EIIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKE-KDHIKGFEPEVYWITHGGLSKLDE 98 (472)
T ss_pred CCccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhh-cchhhhcchhcEEEecCCCCccCC
Confidence 3456677899999999999999999999999999999999999999999999864 4333 68899999976 48
Q ss_pred eEeeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCCC---CCCCcceEEeEEEE-EecCcHH---------HHH
Q 024194 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDI-IGVPAVT---------VLQ 207 (271)
Q Consensus 142 ~laLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~---~Gr~REf~Q~gvEi-iG~~~~~---------ll~ 207 (271)
.++|||+.|++++.+++.... +.++|+|+|++++|||+|.++ .+|.|||+|.+++. +-..... +..
T Consensus 99 ~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~ 178 (472)
T TIGR00408 99 PLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYK 178 (472)
T ss_pred cEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 999999999999988876543 358999999999999999663 34999999999984 4433221 667
Q ss_pred HHHH-hCCCC
Q 024194 208 EVLR-CHSIP 216 (271)
Q Consensus 208 ~~L~-~lGi~ 216 (271)
.+++ .||++
T Consensus 179 ~i~~~~lglp 188 (472)
T TIGR00408 179 EFIENSLAIP 188 (472)
T ss_pred HHHHhccCCe
Confidence 8887 99997
No 36
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.76 E-value=1.5e-18 Score=169.93 Aligned_cols=142 Identities=23% Similarity=0.367 Sum_probs=116.9
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccch-------------------HHhhhhhcc--cc-
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-------------------ALFIRKAGE--EI- 128 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~-------------------d~~~~~~g~--~~- 128 (271)
+++..| | +|++|.+...+.++++.++++|..+||+||.+|.+|+. |+|..+.+. ++
T Consensus 218 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~ 295 (489)
T PRK04172 218 YNVKAP-P-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLP 295 (489)
T ss_pred ceeCCC-C-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCc
Confidence 444444 3 99999999999999999999999999999999999943 555433221 00
Q ss_pred -------------------ccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcc
Q 024194 129 -------------------RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRRE 189 (271)
Q Consensus 129 -------------------~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~RE 189 (271)
..-+|.|.|+.++.++|||++|++++|+++++. ..|+|+|++|+|||++.++.+|.+|
T Consensus 296 ~~~~~~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~---~~p~rlFeiGrVFR~e~~d~~~l~E 372 (489)
T PRK04172 296 EELVERVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRP---EPPQKYFSIGRVFRPDTIDATHLPE 372 (489)
T ss_pred HHHHHHHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcC---CCCeEEEEecceEcCCCCCcccCCc
Confidence 111578888889999999999999999999854 4799999999999999888889999
Q ss_pred eEEeEEEEEecCcHH-----HHHHHHHhCCCCc
Q 024194 190 HYQWNMDIIGVPAVT-----VLQEVLRCHSIPE 217 (271)
Q Consensus 190 f~Q~gvEiiG~~~~~-----ll~~~L~~lGi~~ 217 (271)
|+|++++++|.+... ++..++..+|+++
T Consensus 373 f~ql~~~i~G~~~~f~elkg~l~~ll~~lGi~~ 405 (489)
T PRK04172 373 FYQLEGIVMGEDVSFRDLLGILKEFYKRLGFEE 405 (489)
T ss_pred hheEEEEEEeCCCCHHHHHHHHHHHHHHhCCce
Confidence 999999999975322 7889999999963
No 37
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.74 E-value=1e-17 Score=163.64 Aligned_cols=146 Identities=22% Similarity=0.288 Sum_probs=120.0
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCC----CCe
Q 024194 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRR 142 (271)
Q Consensus 69 ~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~----G~~ 142 (271)
.+++...++|+.+|+|.++++++.|++.+++.+.++||++|.+|+|.+.++|...+|+. ..+++|++.|.+ ++.
T Consensus 26 ~l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~ 105 (477)
T PRK08661 26 ELADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEK 105 (477)
T ss_pred cCcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCce
Confidence 44666678999999999999999999999999999999999999999999997544432 368899999876 468
Q ss_pred EeeCCCC----hHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCC--CCCcceEEeEEEEEecCcHH----------HH
Q 024194 143 VALRPEL----TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTR--GRRREHYQWNMDIIGVPAVT----------VL 206 (271)
Q Consensus 143 laLRPD~----T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~--Gr~REf~Q~gvEiiG~~~~~----------ll 206 (271)
++|||+. |..+++.+.++ .++|+|+|++++|||+|.... +|.|||+|.+++++-.+..+ +.
T Consensus 106 l~LrPtsE~~i~~~~~~~i~Sy---rdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y 182 (477)
T PRK08661 106 LALRPTSETIIYPMYKKWIQSY---RDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIY 182 (477)
T ss_pred EEEecCCcHHHHHHHHhhhcch---hhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHH
Confidence 9999999 55566655432 469999999999999996666 49999999999886544322 56
Q ss_pred HHHH-HhCCCCc
Q 024194 207 QEVL-RCHSIPE 217 (271)
Q Consensus 207 ~~~L-~~lGi~~ 217 (271)
..++ +.||++-
T Consensus 183 ~~i~~~~Lglp~ 194 (477)
T PRK08661 183 KEFFEDYLAIPV 194 (477)
T ss_pred HHHHHHhcCCeE
Confidence 6888 8888873
No 38
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.70 E-value=1.1e-16 Score=152.59 Aligned_cols=123 Identities=23% Similarity=0.369 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhh---hccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 024194 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRK---AGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (271)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~---~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~ 166 (271)
..++++.++++|..+||.||.||+|...+.|... .+....+++|.+ | +.++|||++|++++++++.+....+.
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i-d---eel~LRpsLtPsLlr~la~n~k~~~~ 281 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV-D---KNFCLRPMLAPGLYNYLRKLDRILPD 281 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee-C---CceEehhhhHHHHHHHHHhhhhcccC
Confidence 6889999999999999999999999877665432 122244678875 2 46999999999999998865444578
Q ss_pred CeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-----HHHHHHHhCCCC
Q 024194 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-----VLQEVLRCHSIP 216 (271)
Q Consensus 167 P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-----ll~~~L~~lGi~ 216 (271)
|+|+|++|+|||++..+.++.+||+|+|++++|.+... ++.++|+.+|++
T Consensus 282 P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~LGI~ 336 (417)
T PRK09537 282 PIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHLGID 336 (417)
T ss_pred CeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999888889999999999999976543 788999999995
No 39
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.64 E-value=3.8e-15 Score=128.07 Aligned_cols=123 Identities=29% Similarity=0.474 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCeE
Q 024194 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (271)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K 169 (271)
++++++.++++|..+||+||.||+|+..+.+... |.. .+.+..+.+.+++..+|||++|+++++.++.+. ...|+|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~--~~~~~~ 77 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKA-GHE-PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI--RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHc-Ccc-HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc--ccCCEE
Confidence 5788999999999999999999999998777532 322 234566667789999999999999999998876 568999
Q ss_pred EEEEeceeecCCCCC--CCCcceEEeEEEEEecCcH-----H----HHHHHHHhCCCC
Q 024194 170 WFAVGQCWRYERMTR--GRRREHYQWNMDIIGVPAV-----T----VLQEVLRCHSIP 216 (271)
Q Consensus 170 ~yyig~VfR~e~~~~--Gr~REf~Q~gvEiiG~~~~-----~----ll~~~L~~lGi~ 216 (271)
+||+|+|||.+.... +|.+||+|+|++++|.... . ++.++|+.+|++
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~ 135 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIK 135 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999986544 5679999999999998652 1 788899999973
No 40
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.61 E-value=2.5e-15 Score=138.60 Aligned_cols=138 Identities=22% Similarity=0.245 Sum_probs=118.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHH
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~i 153 (271)
..|+..|+|.++++++.|++.+++.+.+.||++|.||.+.+.++|.. +|.. ..++||++.| +.++|+|+.++++
T Consensus 41 G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~~~f~v~~---~~~~L~pt~e~~~ 116 (297)
T cd00770 41 GSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEG-TGQLPKFDEQLYKVEG---EDLYLIATAEVPL 116 (297)
T ss_pred CCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhh-cCcCccChhcccEecC---CCEEEeecCCHHH
Confidence 45788999999999999999999999999999999999999999975 4652 4678999965 6799999999999
Q ss_pred HHHHHHcC-CCCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCC
Q 024194 154 ARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIP 216 (271)
Q Consensus 154 AR~~a~~~-~~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~ 216 (271)
+.+++... ...++|+|+|++|+|||+|... .| |.|||.|.++.+|..++.. ++..+++.||++
T Consensus 117 ~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~ 196 (297)
T cd00770 117 AALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLP 196 (297)
T ss_pred HHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99988643 3457999999999999999542 45 7899999999999877532 677889999998
Q ss_pred c
Q 024194 217 E 217 (271)
Q Consensus 217 ~ 217 (271)
-
T Consensus 197 ~ 197 (297)
T cd00770 197 Y 197 (297)
T ss_pred E
Confidence 4
No 41
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.9e-15 Score=142.61 Aligned_cols=143 Identities=26% Similarity=0.338 Sum_probs=119.2
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCC
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRP 147 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRP 147 (271)
|++. ..+|+.-|+|-+.+++++|++.+++.+.+.|.+|+..|+|.+.++|..+ |.. ...++|++.|++++.++|||
T Consensus 31 ~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs-~r~~~f~~El~~v~drg~~~l~L~P 108 (500)
T COG0442 31 MIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKES-GRWEGFGPELFRVKDRGDRPLALRP 108 (500)
T ss_pred ceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHh-ChhhhcchhhEEEEccCCceeeeCC
Confidence 3444 6779999999999999999999999999999999999999997777654 543 46899999999999999999
Q ss_pred CChH---HHHHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHHHHHH
Q 024194 148 ELTP---SLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQEVLR 211 (271)
Q Consensus 148 D~T~---~iAR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~~~L~ 211 (271)
..-. ++.|...++ +.++|+++|+|+++||+| +|..| |.|||+.-++.-|-.+... +..+++.
T Consensus 109 TsEe~it~~~~~~i~S--YkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~ 186 (500)
T COG0442 109 TSEEVITDMFRKWIRS--YKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFL 186 (500)
T ss_pred CcHHHHHHHHHHHhhh--hhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 6544 444444443 357999999999999999 67777 8999999999999876543 5678888
Q ss_pred hCCCC
Q 024194 212 CHSIP 216 (271)
Q Consensus 212 ~lGi~ 216 (271)
++|+.
T Consensus 187 ~i~l~ 191 (500)
T COG0442 187 RLPLI 191 (500)
T ss_pred hCCce
Confidence 88876
No 42
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.54 E-value=1.6e-14 Score=140.48 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=128.8
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCC-cccch----H-Hhhhhhccc--cccccEEEeeC----
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFP-VLESE----A-LFIRKAGEE--IRDQLYCFEDR---- 138 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP-~~E~~----d-~~~~~~g~~--~~~~~y~f~D~---- 138 (271)
+++..| | +...+...+-...+.+.++++|...||+++.+| .+|.. | +|... .+. -...+|-+.++
T Consensus 214 yn~~~~-~-~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~Pq-dHPARd~~DTFyl~~~~~~~ 290 (494)
T PTZ00326 214 YNFNAL-G-KKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQ-QHPARDAQDTFFLSKPETSK 290 (494)
T ss_pred ceecCC-C-CCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCC-CCCCCCcCceEEEcCccccc
Confidence 445454 4 677788888999999999999999999999876 66642 2 22111 111 01334544321
Q ss_pred ---------------------------------CCCeEeeCCCChHHHHHHHHHcCCC----CC-CCeEEEEEeceeecC
Q 024194 139 ---------------------------------GNRRVALRPELTPSLARLVIQKGKS----VS-LPLKWFAVGQCWRYE 180 (271)
Q Consensus 139 ---------------------------------~G~~laLRPD~T~~iAR~~a~~~~~----~~-~P~K~yyig~VfR~e 180 (271)
..+.++||+++|++.||+++++.+. .+ .|.|+|++|+|||+|
T Consensus 291 ~~~~p~~~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d 370 (494)
T PTZ00326 291 VNDLDDDYVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNE 370 (494)
T ss_pred cccCcHHHHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCC
Confidence 1257999999999999999986431 22 499999999999999
Q ss_pred CCCCCCCcceEEeEEEEEecCcHH-----HHHHHHHhCCCCccchh--------------hHHHHHHh-hhcCCHHHHH-
Q 024194 181 RMTRGRRREHYQWNMDIIGVPAVT-----VLQEVLRCHSIPEHLFG--------------KVCIIIDK-IEKLPLDVIK- 239 (271)
Q Consensus 181 ~~~~Gr~REf~Q~gvEiiG~~~~~-----ll~~~L~~lGi~~~~~~--------------~v~~~ldk-l~~~~~~~i~- 239 (271)
.++.+|++||+|++++++|.+... ++.++++++|+.+..|. .-+..++| ++.++.+.++
T Consensus 371 ~~DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~lG~~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rp 450 (494)
T PTZ00326 371 TLDATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRIGITKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRP 450 (494)
T ss_pred CCCCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcCccCH
Confidence 999999999999999999987533 78899999998664442 00111111 5778899999
Q ss_pred HHHHhCCCCHH
Q 024194 240 NDLKSAGMSEA 250 (271)
Q Consensus 240 ~~L~~lgLs~~ 250 (271)
++|+.+|++++
T Consensus 451 evL~~~Gi~~~ 461 (494)
T PTZ00326 451 EMLRPMGFPED 461 (494)
T ss_pred HHHHhcCCCCc
Confidence 88899999765
No 43
>PLN02837 threonine-tRNA ligase
Probab=99.50 E-value=1e-13 Score=139.37 Aligned_cols=142 Identities=19% Similarity=0.284 Sum_probs=123.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
...|+..|+|.++++++.|++.+++...++||++|.||.+-..++|.. +|+. ..++||++.|.+++.++|||...+.
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~ 313 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKT-SGHLDFYKENMYDQMDIEDELYQLRPMNCPY 313 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhh-cCCcccchhhcccccCCCCceEEECCCCcHH
Confidence 467999999999999999999999999999999999999999999975 4654 4688999999888999999999999
Q ss_pred HHHHHHHcCC-CCCCCeEEEEEeceeecCCC--CCC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCc
Q 024194 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERM--TRG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 153 iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~--~~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~ 217 (271)
++-++..... +.++|+|++++|+|||+|.. ..| |.|||+|.++.+|..++.. ++.++++.+|++.
T Consensus 314 ~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~ 392 (614)
T PLN02837 314 HILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSK 392 (614)
T ss_pred HHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 8887776543 45799999999999999964 345 8999999999999887643 6778899999985
No 44
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=9.2e-14 Score=128.62 Aligned_cols=144 Identities=21% Similarity=0.348 Sum_probs=126.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
..-.|+.-|+|-+.+..+++.+.+...|..-|.++|..|++-+.++|.. +|.+ ...++|++.|++|+.++|-|...-
T Consensus 39 ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWek-TgRw~~~gsEl~rl~Dr~gkq~cL~pThEE 117 (457)
T KOG2324|consen 39 PSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEK-TGRWDAMGSELFRLHDRKGKQMCLTPTHEE 117 (457)
T ss_pred cCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHh-cCcccccchhheEeeccCCCEeccCCchHH
Confidence 4457999999999999999999999999999999999999999999975 4655 368899999999999999998877
Q ss_pred HHHHHHHHcC--CCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHHHHHHhCCCC
Q 024194 152 SLARLVIQKG--KSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQEVLRCHSIP 216 (271)
Q Consensus 152 ~iAR~~a~~~--~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~~~L~~lGi~ 216 (271)
-+.+.+++.. .+.++|+++|+||+-||+| +|..| |-|||+.-|+.-|..+... ....+|+.+|++
T Consensus 118 ~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~p 197 (457)
T KOG2324|consen 118 DITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLP 197 (457)
T ss_pred HHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7777777654 2568999999999999999 88888 7899999999999987643 567889999998
Q ss_pred cc
Q 024194 217 EH 218 (271)
Q Consensus 217 ~~ 218 (271)
-.
T Consensus 198 fV 199 (457)
T KOG2324|consen 198 FV 199 (457)
T ss_pred eE
Confidence 53
No 45
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.49 E-value=2.5e-13 Score=132.14 Aligned_cols=144 Identities=18% Similarity=0.196 Sum_probs=111.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHH--cCCeeecCCcccchHHhhhhhccc--cccccEEEe--------------
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRL--FGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFE-------------- 136 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~--~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~-------------- 136 (271)
-..|+.||+|.++.+++.|++.+++.+.. .||.||.||++-+.++|.. +|+. ..+.||...
T Consensus 26 ~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~-SGH~~~f~d~m~~~~~~~~~~r~d~~~~~ 104 (456)
T PRK04173 26 GLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEA-SGHVDNFSDPLVECKKCKKRYRADHLIEE 104 (456)
T ss_pred chhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhh-cCCccccCCceeEeCCCCCEeechhhhHH
Confidence 35799999999999999999999999988 8999999999999999976 3653 234444432
Q ss_pred -------------------------------------------------eCCCCeEeeCCCChHHHHHHHHHcCC-CC-C
Q 024194 137 -------------------------------------------------DRGNRRVALRPELTPSLARLVIQKGK-SV-S 165 (271)
Q Consensus 137 -------------------------------------------------D~~G~~laLRPD~T~~iAR~~a~~~~-~~-~ 165 (271)
+.++..+.|||+....+-=.+....+ ++ +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~d 184 (456)
T PRK04173 105 LGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKK 184 (456)
T ss_pred HhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhcccc
Confidence 11233567899888776544443222 34 7
Q ss_pred CCeEEEEEeceeecCC-CCCC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCccc
Q 024194 166 LPLKWFAVGQCWRYER-MTRG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPEHL 219 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~-~~~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~~~ 219 (271)
+|+|++++|+|||+|. +..| |.|||+|.++++|..++.. ++..++..+|+++..
T Consensus 185 LPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~ 250 (456)
T PRK04173 185 LPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPEN 250 (456)
T ss_pred CCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999999999994 4455 8899999999999988643 677889999998643
No 46
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.46 E-value=6.1e-13 Score=133.46 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=130.5
Q ss_pred cccCC--CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeC
Q 024194 71 IDVNP--PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALR 146 (271)
Q Consensus 71 ~~~~~--p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLR 146 (271)
+++.. ..|..-|+|.++.+++.|.+.+++.+.++||++|.||.+-..+++... |+. ..++||.+. .+++.++||
T Consensus 209 ~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~s-gh~~~f~e~my~v~-~~~e~l~Lr 286 (613)
T PRK03991 209 ADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIR-EHADKFGERQYRVK-SDKKDLMLR 286 (613)
T ss_pred cccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhc-ccccccchhceEec-CCCceEEEe
Confidence 44443 469999999999999999999999999999999999999888777542 432 467899874 457899999
Q ss_pred CCChHHHHHHHHHcCC-CCCCCeEEEEEec-eeecCCCC--CC--CCcceEEeEEEEEecC-cHH---------HHHHHH
Q 024194 147 PELTPSLARLVIQKGK-SVSLPLKWFAVGQ-CWRYERMT--RG--RRREHYQWNMDIIGVP-AVT---------VLQEVL 210 (271)
Q Consensus 147 PD~T~~iAR~~a~~~~-~~~~P~K~yyig~-VfR~e~~~--~G--r~REf~Q~gvEiiG~~-~~~---------ll~~~L 210 (271)
|..+++++-+...... +.++|+|+|++|+ +||+|..+ .| |.|||+|.++.+|..+ +.. ++.+++
T Consensus 287 p~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 287 FAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETG 366 (613)
T ss_pred cCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 9999999888776543 4579999999999 99999654 45 8999999999999985 322 677889
Q ss_pred HhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 024194 211 RCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMS 248 (271)
Q Consensus 211 ~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs 248 (271)
+.+|++-.. +...-++.-....+.++++++.+|++
T Consensus 367 ~~lGl~~~~---~~~~t~df~~~~~~~l~~~l~~~g~~ 401 (613)
T PRK03991 367 EDLGRDYEV---AIRFTEDFYEENKDWIVELVKREGKP 401 (613)
T ss_pred HHcCCCeEE---EecCHHHHhhhHHHHHHHHHHHcCCC
Confidence 999997321 11111111112234455666666654
No 47
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.4e-13 Score=138.54 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=116.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHH
Q 024194 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQ 159 (271)
Q Consensus 80 ~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~ 159 (271)
.++.+.-...++++.+.+.++|++||+.+++||.+-...- ......+.+.++|++|..++|..|++.|+||+++.
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~-----~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~ 999 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNA-----CAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSR 999 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccc-----cchhccceeeeecCCCCEEEeeccccchHHHHhhh
Confidence 5677778889999999999999999999999995433221 11124678999999999999999999999999998
Q ss_pred cCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH----H---HHHHHHHhCCCCccchhhHHHHHHhhhc
Q 024194 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV----T---VLQEVLRCHSIPEHLFGKVCIIIDKIEK 232 (271)
Q Consensus 160 ~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~----~---ll~~~L~~lGi~~~~~~~v~~~ldkl~~ 232 (271)
+.. +-+|.|.++.|||... .. +++|++||++||||...- + ++.++... -+.+-.+. +..
T Consensus 1000 N~~---~~~Kry~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~-~l~~~n~~--------i~l 1065 (1351)
T KOG1035|consen 1000 NSV---LSFKRYCISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE-ILHEGNCD--------IHL 1065 (1351)
T ss_pred chH---HHHHHhhhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH-HhccCcee--------EEe
Confidence 653 5789999999999987 44 999999999999997642 2 22222221 11111111 223
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 024194 233 LPLDVIKNDLKSAGMSEAAIEELLRVLS 260 (271)
Q Consensus 233 ~~~~~i~~~L~~lgLs~~~~~~L~~~l~ 260 (271)
+|.+.+++++...|+++++..++.+++.
T Consensus 1066 nH~~LL~Ai~~~~~i~~~~r~~v~~~l~ 1093 (1351)
T KOG1035|consen 1066 NHADLLEAILSHCGIPKDQRRKVAELLS 1093 (1351)
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566666666666666666666655554
No 48
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.39 E-value=3e-12 Score=123.34 Aligned_cols=138 Identities=19% Similarity=0.278 Sum_probs=116.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHH
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~i 153 (271)
..|+.-|.|.++++.+.+.+.+.+.+.++||++|.+|.+-..++|.. +|.. ..++||++.| +.++|+|....++
T Consensus 162 G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~-~G~~~~f~~~~y~i~~---~~~~L~pTsE~~~ 237 (418)
T TIGR00414 162 GSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDG-TGQLPKFEEDIFKLED---TDLYLIPTAEVPL 237 (418)
T ss_pred CCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCccccccccceEecC---CCEEEEeCCcHHH
Confidence 45688999999999999999999999999999999999999999965 3543 3578999854 4689999999999
Q ss_pred HHHHHHcCC-CCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCC
Q 024194 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIP 216 (271)
Q Consensus 154 AR~~a~~~~-~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~ 216 (271)
+-+++.... +.++|+|+|++++|||+|... .| |.+||.+.++.+|..+... +..++++.||++
T Consensus 238 ~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp 317 (418)
T TIGR00414 238 TNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELP 317 (418)
T ss_pred HHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 988775543 457999999999999999532 34 8899999999999876533 677899999998
Q ss_pred c
Q 024194 217 E 217 (271)
Q Consensus 217 ~ 217 (271)
-
T Consensus 318 ~ 318 (418)
T TIGR00414 318 Y 318 (418)
T ss_pred e
Confidence 4
No 49
>PRK09350 poxB regulator PoxA; Provisional
Probab=99.33 E-value=1.4e-12 Score=120.90 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeC--CCChHHHHHHHHHcCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALR--PELTPSLARLVIQKGK 162 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D-~~G~~laLR--PD~T~~iAR~~a~~~~ 162 (271)
-.+.+..+.+.+++.|.++||.||.||+++.++........ ...+ |.+.| ..|+.+.|| |++| +.|+++..
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~-f~~~-y~~~~~~~~~~~~L~~SPe~~--~kr~la~~-- 77 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVP-FETR-FVGPGASQGKTLWLMTSPEYH--MKRLLAAG-- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCc-eeee-eccccccCCcceEEecCHHHH--HHHHhhcc--
Confidence 45789999999999999999999999999876643211100 1111 55556 578999999 9999 77777653
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~ 203 (271)
.-|+||+|+|||++....+|..||+|+++|..+.+-.
T Consensus 78 ----~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~ 114 (306)
T PRK09350 78 ----SGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMY 114 (306)
T ss_pred ----ccceEEecceeecCCCCCCCCcHHHhhhhhhhCCCHH
Confidence 2399999999999988888999999999999987533
No 50
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.33 E-value=1.1e-11 Score=119.80 Aligned_cols=138 Identities=24% Similarity=0.306 Sum_probs=116.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~-~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
..|+..|.|.++++.+.|.+.+.+.+. ++||++|.||.+-..++|... |.. ..++||++. ++.+.|+|....+
T Consensus 159 G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~-G~~~~f~~~ly~i~---~~~~~L~pTsE~~ 234 (425)
T PRK05431 159 GSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGT-GQLPKFEEDLYKIE---DDDLYLIPTAEVP 234 (425)
T ss_pred CceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhc-CccccchhhceEec---CCCEEEEeCCcHH
Confidence 557899999999999999999988888 999999999999999998753 644 357899985 3679999999999
Q ss_pred HHHHHHHcCC-CCCCCeEEEEEeceeecCCC-----CCC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCC
Q 024194 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERM-----TRG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSI 215 (271)
Q Consensus 153 iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~-----~~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi 215 (271)
++.+++.... +.++|+|+|.+++|||+|.. ..| |.+||++.++.+|..++.. +..++++.||+
T Consensus 235 l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lgl 314 (425)
T PRK05431 235 LTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLEL 314 (425)
T ss_pred HHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9998886543 45799999999999999953 345 7899999999999987532 67789999999
Q ss_pred Cc
Q 024194 216 PE 217 (271)
Q Consensus 216 ~~ 217 (271)
+-
T Consensus 315 py 316 (425)
T PRK05431 315 PY 316 (425)
T ss_pred cE
Confidence 83
No 51
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7.2e-12 Score=124.48 Aligned_cols=143 Identities=24% Similarity=0.377 Sum_probs=123.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
...+|+.-|+|.++..++.+++.++.....+||++|.||.+...++|... |+. ..+.||.+.. .++.++|||..++
T Consensus 207 ~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~S-GH~~~y~e~mf~~~~-~~~~~~lKpmNCp 284 (589)
T COG0441 207 EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELS-GHWDNYKEDMFLTES-DDREYALKPMNCP 284 (589)
T ss_pred ccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhc-cchhhccccceeecc-CChhheeeeccCH
Confidence 37899999999999999999999999999999999999999999999764 654 4688997754 4599999999999
Q ss_pred HHHHHHHHcCC-CCCCCeEEEEEeceeecCCCC--CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCc
Q 024194 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 152 ~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~--~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~ 217 (271)
..+.++..... ++.+|+|++..|.|||+|.++ .| |.|+|+|-++.||...+.. ++..+++.+|+++
T Consensus 285 gh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~ 364 (589)
T COG0441 285 GHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTD 364 (589)
T ss_pred hHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 99998887654 467999999999999999775 45 8999999999999995533 5667788999985
Q ss_pred c
Q 024194 218 H 218 (271)
Q Consensus 218 ~ 218 (271)
.
T Consensus 365 y 365 (589)
T COG0441 365 Y 365 (589)
T ss_pred E
Confidence 3
No 52
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.12 E-value=3.6e-10 Score=103.08 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeC--CCChHHHHHHHHHcCCCC
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALR--PELTPSLARLVIQKGKSV 164 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D-~~G~~laLR--PD~T~~iAR~~a~~~~~~ 164 (271)
+.+..+.+.+++.|.++||.||+||+++.... |. ..+.|.+.. ..|+.+.|+ |+++ ..++++...
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~-----~~--~~~~f~~~~~~~g~~~~L~~Spql~--~~~~~~~~~--- 69 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITG-----GA--GARPFLVKYNALGLDYYLRISPQLF--KKRLMVGGL--- 69 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccCC-----cc--ccceEEeeecCCCCcEEeecCHHHH--HHHHHhcCC---
Confidence 46889999999999999999999999985421 22 135677632 258899999 8887 455554432
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~ 201 (271)
-|+|+|++|||+|..+.+|.+||+|+++|..+.+
T Consensus 70 ---~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~~ 103 (269)
T cd00669 70 ---DRVFEINRNFRNEDLRARHQPEFTMMDLEMAFAD 103 (269)
T ss_pred ---CcEEEEecceeCCCCCCCcccceeEEEEEEecCC
Confidence 2999999999999888889999999999988764
No 53
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.08 E-value=5.6e-10 Score=109.69 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=117.0
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHH-HHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeC--------
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEV-SRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR-------- 138 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~v-f~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~-------- 138 (271)
+++.-..+|+.-|.|.++++.+.+++.+++. ++++||+++.+|.+-+.++|... |.. ..++||.+.+.
T Consensus 206 lldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ks-Ghl~~F~e~my~V~~~~~d~e~~~ 284 (517)
T PRK00960 206 WVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKM-RYLEGLPEGMYYVCPPKRDPEYFE 284 (517)
T ss_pred CccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhc-CCccCChhhceEeecccccccccc
Confidence 4555568899999999999999999999876 78889999999999999999764 543 45778877421
Q ss_pred ---------------------CCCeEeeCCCChHHHHHHHHHcCC-CCCCCeEEEE-EeceeecCCC-CCC--CCcceEE
Q 024194 139 ---------------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERM-TRG--RRREHYQ 192 (271)
Q Consensus 139 ---------------------~G~~laLRPD~T~~iAR~~a~~~~-~~~~P~K~yy-ig~VfR~e~~-~~G--r~REf~Q 192 (271)
....++|||..++++.-+++.... ..++|+|++. .|+|||+|.. ..| |.+||+|
T Consensus 285 ~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~k 364 (517)
T PRK00960 285 EFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHR 364 (517)
T ss_pred chhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEE
Confidence 134679999999999887774432 4578999998 7799999942 344 8999999
Q ss_pred eEEEEEecCcHH---------HHHHHHHhCCCC
Q 024194 193 WNMDIIGVPAVT---------VLQEVLRCHSIP 216 (271)
Q Consensus 193 ~gvEiiG~~~~~---------ll~~~L~~lGi~ 216 (271)
..+-+||.+... ....+++.||++
T Consensus 365 vE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp 397 (517)
T PRK00960 365 IEIVWLGTPEQVEEIRDELLKYAHILAEKLDLE 397 (517)
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999987643 455778999998
No 54
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.01 E-value=4e-09 Score=95.10 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhhhc--cc----cccccEEEeeCC---CCeEeeCCCChHHHH
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRKAG--EE----IRDQLYCFEDRG---NRRVALRPELTPSLA 154 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d-~~~~~~g--~~----~~~~~y~f~D~~---G~~laLRPD~T~~iA 154 (271)
........+.+.++++|...||+++..|.+|... .|.. .+ .+ ....+|-+.++. .+..+||+.+|+..+
T Consensus 14 G~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~-Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~ 92 (247)
T PF01409_consen 14 GRLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDA-LNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQL 92 (247)
T ss_dssp SBTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGG-GTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHh-hCcCCCccccccccceeeeccccccchhhhhhhhhhHHHH
Confidence 3445678899999999999999999999997643 3322 11 11 124467665554 588999999999999
Q ss_pred HHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-----HHHHHHHhC-CCC
Q 024194 155 RLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-----VLQEVLRCH-SIP 216 (271)
Q Consensus 155 R~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-----ll~~~L~~l-Gi~ 216 (271)
|.+. ...+.|+|++++|+|||++.....+..+|+|++.=++|.+... ++..+++.+ |.+
T Consensus 93 ~~l~---~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 93 RTLN---KHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGID 157 (247)
T ss_dssp HHHT---TTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHH---HhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhcc
Confidence 9982 2346899999999999999877788999999999999876432 788899999 987
No 55
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.97 E-value=6.2e-09 Score=96.13 Aligned_cols=138 Identities=21% Similarity=0.267 Sum_probs=99.3
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccch-HHhhhh-hcc--cccc--ccEEEeeCCCCeE
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRK-AGE--EIRD--QLYCFEDRGNRRV 143 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~-d~~~~~-~g~--~~~~--~~y~f~D~~G~~l 143 (271)
.+++.+|.+ ...+........+.+.++++|...||.|+.+|.|+.. ..|..- ... ...+ ..|.+. ...
T Consensus 56 ~~d~tlp~~--~~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~----d~~ 129 (294)
T TIGR00468 56 TYDVTLPGT--KIYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK----DRL 129 (294)
T ss_pred cCcccCCCC--CCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec----CCc
Confidence 355665653 2333456667888999999999999999999999876 233221 011 1111 345554 468
Q ss_pred eeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCC
Q 024194 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 144 aLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~ 216 (271)
+||+.+++.++|.++.+.+ .|+|+|.+|+|||++.....+..||+|+++-+.+.+ +.. ++..++..+|++
T Consensus 130 vLRtsl~p~ll~~l~~N~~---~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 130 LLRTHTTAVQLRTMEENEK---PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred ceecccHHHHHHHHHhcCC---CCceEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999987643 799999999999987644445559999998888742 232 788889999885
No 56
>PLN02678 seryl-tRNA synthetase
Probab=98.95 E-value=4.7e-09 Score=101.88 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=101.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHHHH
Q 024194 78 GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLAR 155 (271)
Q Consensus 78 G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~iAR 155 (271)
++..+.+.++++.+.|.+.+.+...++||++|.||.+-..++|... |.. ..++||++.+.+. .+.|-|..-++++=
T Consensus 165 ~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~s-G~~~~f~e~my~i~~~~~-~~yLi~TaE~~l~~ 242 (448)
T PLN02678 165 RGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKC-AQLAQFDEELYKVTGEGD-DKYLIATSEQPLCA 242 (448)
T ss_pred eeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhc-CCcccchhcCceecCCCC-ceeeecccccccCh
Confidence 3444444899999999999999999999999999999999999753 543 4678999865433 44455532234433
Q ss_pred HHHHc-CCCCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcH----H-------HHHHHHHhCCCC
Q 024194 156 LVIQK-GKSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV----T-------VLQEVLRCHSIP 216 (271)
Q Consensus 156 ~~a~~-~~~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~----~-------ll~~~L~~lGi~ 216 (271)
+++.. ....++|+|++.+++|||+|... .| |.++|+|+..-.|..++. . ...++|+.||++
T Consensus 243 ~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lp 322 (448)
T PLN02678 243 YHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIP 322 (448)
T ss_pred HHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCC
Confidence 33322 22457999999999999999753 34 679999999988865553 1 567899999988
No 57
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=8.1e-10 Score=105.50 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=113.4
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCC
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPE 148 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD 148 (271)
+--++.+|.--|+|.++++.+.+.+-++..+++.||+||.||.+-...+|.. +|++ ..++||+|.- ..+..+|.|+
T Consensus 176 ff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~-SGHwqnY~enmF~~e~-eke~~~LKPM 253 (560)
T KOG1637|consen 176 FFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWET-SGHWQNYSENMFKFEV-EKEEFALKPM 253 (560)
T ss_pred eeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhh-ccchhhhhhhceeeee-chhhhccCcc
Confidence 4456788999999999999999999999999999999999999999999975 4765 5788999864 4567999999
Q ss_pred ChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCCC--CC--CCcceEEeEEEEEecCcH
Q 024194 149 LTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 149 ~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~--~G--r~REf~Q~gvEiiG~~~~ 203 (271)
.++..+-+.+.+.+ .+++|+|+.-+|.+.|+|-++ .| |.|+|+|-++.||..++.
T Consensus 254 NCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Q 313 (560)
T KOG1637|consen 254 NCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQ 313 (560)
T ss_pred CCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCcc
Confidence 99999888876654 457999999999999999553 33 899999999999998874
No 58
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.86 E-value=4.6e-08 Score=86.43 Aligned_cols=118 Identities=19% Similarity=0.283 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhhhcccccc------ccEEEeeCCCCeEeeCCCChHHHHHHHHHcCC
Q 024194 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRKAGEEIRD------QLYCFEDRGNRRVALRPELTPSLARLVIQKGK 162 (271)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d-~~~~~~g~~~~~------~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~ 162 (271)
.+.+.+.+++++...||.|+.|++|...+ .+.. .+..... ..+++.++- .-+||+.+++++.+.++.+
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~-~~~~~~~~~~~~~~~v~l~NP~--~~~LR~sLlp~LL~~l~~N-- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDA-LNIPQDHPARDMQDTFYINDPA--RLLLRTHTSAVQARALAKL-- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhh-cCCCCCCcccccCceEEECCCc--eEEEeccCcHHHHHHHHhc--
Confidence 46778889999999999999999997762 3321 1211000 234555544 7899999999999999886
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCC
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHS 214 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lG 214 (271)
..++|+|++|+|||.++...++..|+.++++.+.|.. +.. ++..++..+|
T Consensus 78 --~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 --KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELF 132 (218)
T ss_pred --CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 4699999999999987543344559999999999964 222 7788888888
No 59
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=98.81 E-value=5.3e-08 Score=95.21 Aligned_cols=146 Identities=18% Similarity=0.262 Sum_probs=114.7
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHH-HHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeC--------
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQ-EVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR-------- 138 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~-~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~-------- 138 (271)
+++.-..+|+.-|.|.++++.+.+.+.+. ..++++||+++.+|.|-+.+.+... |.. ..+++|.+...
T Consensus 206 lidk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~-ghl~gF~~e~y~Vt~~~~d~d~~~ 284 (520)
T TIGR00415 206 WVKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKM-RYLEGLPEGMYYCCAPKRDPELFE 284 (520)
T ss_pred CeeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHccc-CCCCCCchhheEEecCCCCcchhh
Confidence 45566788999999999999999999996 5778889999999999999988754 432 35678876421
Q ss_pred ---------------------CCCeEeeCCCChHHHHHHHHHcC-CCCCCCeEEEE-EeceeecCCC-CCC--CCcceEE
Q 024194 139 ---------------------GNRRVALRPELTPSLARLVIQKG-KSVSLPLKWFA-VGQCWRYERM-TRG--RRREHYQ 192 (271)
Q Consensus 139 ---------------------~G~~laLRPD~T~~iAR~~a~~~-~~~~~P~K~yy-ig~VfR~e~~-~~G--r~REf~Q 192 (271)
....++|+|....++.-+++... ...++|+|++. .++|||+|.. .+| |.+||.+
T Consensus 285 ~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~k 364 (520)
T TIGR00415 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLR 364 (520)
T ss_pred ccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEE
Confidence 12268999999999998887544 23578999999 6689999953 455 7899999
Q ss_pred eEEEEEecCcHH---------HHHHHHHhCCCC
Q 024194 193 WNMDIIGVPAVT---------VLQEVLRCHSIP 216 (271)
Q Consensus 193 ~gvEiiG~~~~~---------ll~~~L~~lGi~ 216 (271)
...-.+|.+... ....+++.||++
T Consensus 365 vE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lp 397 (520)
T TIGR00415 365 VECVWIAEPEETEEIRDKTLELAEDAADELDLE 397 (520)
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 988888876532 566888999993
No 60
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.79 E-value=9.1e-08 Score=89.65 Aligned_cols=135 Identities=16% Similarity=0.234 Sum_probs=102.4
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhh-hccc--c--ccccEEEeeCCCCeE
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK-AGEE--I--RDQLYCFEDRGNRRV 143 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d-~~~~~-~g~~--~--~~~~y~f~D~~G~~l 143 (271)
.+++.+|. +.+..........+.+.++++|...||+++.+|.+|... .|..- ...+ . ...+|.+ ....
T Consensus 92 ~~d~t~p~--~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI----~~~~ 165 (339)
T PRK00488 92 TIDVTLPG--RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI----DDGL 165 (339)
T ss_pred cccccCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE----cCCc
Confidence 35666664 556666778899999999999999999999999998643 33221 0111 1 1245666 2459
Q ss_pred eeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-----HHHHHHHhC-C
Q 024194 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-----VLQEVLRCH-S 214 (271)
Q Consensus 144 aLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-----ll~~~L~~l-G 214 (271)
+||..+|+..+|.+.. .+.|+|++.+|+|||++.....|..+|+|+..=+++.+-.. ++..+++.+ |
T Consensus 166 lLRThTSp~qir~L~~----~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 166 LLRTHTSPVQIRTMEK----QKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred eeeccCcHHHHHHHHh----cCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999998876 24799999999999999877778999999999999875322 677777777 5
No 61
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=98.77 E-value=3.7e-08 Score=96.05 Aligned_cols=143 Identities=20% Similarity=0.280 Sum_probs=106.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH--HcCCeeecCCcccchHHhhhhhcccc-----------ccc----------
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSR--LFGFEEVDFPVLESEALFIRKAGEEI-----------RDQ---------- 131 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~--~~Gy~eI~tP~~E~~d~~~~~~g~~~-----------~~~---------- 131 (271)
-..|+.||.|-++.+++.|.+.|++.|. +-+..+|++|++.+..+|.. +|+.- -+.
T Consensus 28 g~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~a-SGH~~~F~DpmV~CkkCk~ryRaD~Liik 106 (539)
T PRK14894 28 GLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKY-SGHEETFNDPLVDCRDCKMRWRADHIQGV 106 (539)
T ss_pred CcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeee-ccCCCCCCCceeECCCCCccccCccceee
Confidence 3569999999999999999999999884 56778999999999988865 35420 011
Q ss_pred -----------------cEEEe-eC---CCCeEeeCCCChHHH----HHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC
Q 024194 132 -----------------LYCFE-DR---GNRRVALRPELTPSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG 185 (271)
Q Consensus 132 -----------------~y~f~-D~---~G~~laLRPD~T~~i----AR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G 185 (271)
||+.. -+ +.....|||+....| .|.+..+ ...+|+-..+||++||+| .|..|
T Consensus 107 CP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~--~~klPFgiaQIGk~FRNEIsPr~~ 184 (539)
T PRK14894 107 CPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATS--ARKLPFGIAQVGKAFRNEINPRNF 184 (539)
T ss_pred CCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhc--CCCCCeeEEeeeccccCccCCCCc
Confidence 11111 11 124689999988764 4444433 346999999999999999 77777
Q ss_pred --CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCccch
Q 024194 186 --RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPEHLF 220 (271)
Q Consensus 186 --r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~~~~ 220 (271)
|.|||.|+.+|.|-.++.. .....|..+||+.+.+
T Consensus 185 l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~l 230 (539)
T PRK14894 185 LFRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSRI 230 (539)
T ss_pred eeecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHHHe
Confidence 8999999999999877632 3457789999987554
No 62
>PLN02320 seryl-tRNA synthetase
Probab=98.74 E-value=3e-08 Score=97.19 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=103.6
Q ss_pred CCCCC-CChHHHHHH-HHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc--cc-ccEEEeeCCCCeEeeCCCChH
Q 024194 77 KGTRD-FPPEDMRLR-NWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI--RD-QLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 77 ~G~~d-~lp~e~~~~-~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~--~~-~~y~f~D~~G~~laLRPD~T~ 151 (271)
.|.+- |++.+...+ +.+.+.+.+...++||++|.||.+-..++|.. +|... .+ ++|++. ++.+.|-|..-.
T Consensus 221 sG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~-sG~~p~~e~~~~y~ie---~ed~~Li~TaE~ 296 (502)
T PLN02320 221 SGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEK-CGFQPRGDNTQVYSID---GSDQCLIGTAEI 296 (502)
T ss_pred CCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHh-cCCCcccccCceeEEC---CCceEEeecccc
Confidence 48888 578767655 79999999999999999999999999999975 36532 22 677763 466888654444
Q ss_pred HHHHHHHHcC-CCCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCC
Q 024194 152 SLARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHS 214 (271)
Q Consensus 152 ~iAR~~a~~~-~~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lG 214 (271)
|++-...... ...++|+|++..|+|||+|... .| |.++|.|...-+|..++.. ++.++++.||
T Consensus 297 Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~Lg 376 (502)
T PLN02320 297 PVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLG 376 (502)
T ss_pred cccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4443333222 3457999999999999999663 33 7899999999999986532 6778999999
Q ss_pred CCc
Q 024194 215 IPE 217 (271)
Q Consensus 215 i~~ 217 (271)
++.
T Consensus 377 Lpy 379 (502)
T PLN02320 377 LHF 379 (502)
T ss_pred CCe
Confidence 984
No 63
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.72 E-value=9e-08 Score=87.86 Aligned_cols=100 Identities=20% Similarity=0.337 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D--~~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
+++..+...+++.|.+.||.||+||++..... . |. .. |.... ..|....|+--.-...=+.++..
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~--~--g~---~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~g----- 68 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP--E--GA---RD-FLVPSRLHPGKFYALPQSPQLFKQLLMVSG----- 68 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC--C--CC---CC-ceeccccCCCceeecccCHHHHHHHHHhcC-----
Confidence 46889999999999999999999999964332 1 11 11 32221 13444445532222222233331
Q ss_pred CCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC
Q 024194 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~ 201 (271)
--|+||+|+|||+++++.+|..||+|+++|+.+.+
T Consensus 69 -~~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~~ 103 (280)
T cd00777 69 -FDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVD 103 (280)
T ss_pred -cCcEEEeccceeCCCCCCCccceeEEeEeeeccCC
Confidence 24999999999999999999889999999999874
No 64
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.69 E-value=1e-07 Score=89.15 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCC
Q 024194 84 PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 84 p~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
-.-.+++..|.+.+++.|.++||.+|+||+++..+. +...+.|++ |--|+.+-|+.-.....=+.++. .
T Consensus 21 ~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~-------e~~~~~f~~-~~~~~~~yL~~Spql~lk~l~~~-~-- 89 (322)
T cd00776 21 QAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT-------EGGAELFKV-SYFGKPAYLAQSPQLYKEMLIAA-L-- 89 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC-------CccCCcccc-ccCCCcceecCCHHHHHHHHHHh-h--
Confidence 345688999999999999999999999999986321 112334543 22456677774444444344433 2
Q ss_pred CCCCeEEEEEeceeecCCCCCC-CCcceEEeEEEEEecCcHH
Q 024194 164 VSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEiiG~~~~~ 204 (271)
-|+|+||+|||+|....+ |..||+|+++|..|.++.+
T Consensus 90 ----~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~ 127 (322)
T cd00776 90 ----ERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYN 127 (322)
T ss_pred ----hhhEEeccccccCCCCcCCCcceeeccceeeeccCCHH
Confidence 389999999999976543 6799999999999985543
No 65
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=4.2e-08 Score=95.45 Aligned_cols=125 Identities=21% Similarity=0.308 Sum_probs=96.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHH--cCCeeecCCcccchHHhhhhhccc--------------------------
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRL--FGFEEVDFPVLESEALFIRKAGEE-------------------------- 127 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~--~Gy~eI~tP~~E~~d~~~~~~g~~-------------------------- 127 (271)
.+|+.||.|.++.++++|.+.|++.|.. -|..+|+||++.+.++|..+ |+.
T Consensus 29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kAS-GHvd~FsDplv~c~~c~~~yRADHLiEe~ 107 (558)
T COG0423 29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKAS-GHVDKFSDPLVECKKCGERYRADHLIEEY 107 (558)
T ss_pred cccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhc-CcccccccceeeccccchhhhhhHHHHHH
Confidence 4599999999999999999999999966 58999999999999888653 531
Q ss_pred c----cc--------------------------c------cEEE-eeC-CCCeEeeCCCChHH----HHHHHHHcCCCCC
Q 024194 128 I----RD--------------------------Q------LYCF-EDR-GNRRVALRPELTPS----LARLVIQKGKSVS 165 (271)
Q Consensus 128 ~----~~--------------------------~------~y~f-~D~-~G~~laLRPD~T~~----iAR~~a~~~~~~~ 165 (271)
. .. + ||+. +-+ +|+...|||+.... +-|.+-.. ...
T Consensus 108 l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~--r~k 185 (558)
T COG0423 108 LGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFA--RNK 185 (558)
T ss_pred hhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHh--ccC
Confidence 0 00 0 2211 122 46789999997765 34443332 346
Q ss_pred CCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcH
Q 024194 166 LPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 166 ~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~ 203 (271)
+|+-..+||+.||+| .|..| |.|||.|+.+|.|-.+..
T Consensus 186 lPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~ 226 (558)
T COG0423 186 LPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEE 226 (558)
T ss_pred CCeEEEeechhhccccCcccceeehhhhhhhheeeEECCCc
Confidence 899999999999999 77777 899999999999987764
No 66
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.65 E-value=1.4e-07 Score=92.07 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=118.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCeee-cCCcccch----H-Hhhhhhccc--cccccEEEeeC--------------
Q 024194 81 DFPPEDMRLRNWLFHNFQEVSRLFGFEEV-DFPVLESE----A-LFIRKAGEE--IRDQLYCFEDR-------------- 138 (271)
Q Consensus 81 d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI-~tP~~E~~----d-~~~~~~g~~--~~~~~y~f~D~-------------- 138 (271)
...+...+-...+.+.++++|...||+++ ..|.+|.. | +|... .+. -...+|-+.++
T Consensus 214 ~~~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~Pq-dHPARd~qDTFyl~~~~~~~~~p~~~~erV 292 (492)
T PLN02853 214 PPEGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQ-QHPARDSHDTFFLKAPATTRQLPEDYVERV 292 (492)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCC-CCCCCCccceEEEcCccccccCcHHHHHHH
Confidence 45556677889999999999999999999 56777753 2 22111 110 12335555321
Q ss_pred ---------------------CCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEE
Q 024194 139 ---------------------GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDI 197 (271)
Q Consensus 139 ---------------------~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEi 197 (271)
..+.++||...|+--+|++.........|.|+|.+|+|||+|.....|.-||+|+..-+
T Consensus 293 k~~He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~v 372 (492)
T PLN02853 293 KTVHESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLV 372 (492)
T ss_pred HHHHhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEE
Confidence 12579999999999999998643323479999999999999988888999999999999
Q ss_pred EecCcH-H----HHHHHHHhCCCCccchh-------------hHHHH-HHh-hhcCCHHHHH-HHHHhCCCCHH
Q 024194 198 IGVPAV-T----VLQEVLRCHSIPEHLFG-------------KVCII-IDK-IEKLPLDVIK-NDLKSAGMSEA 250 (271)
Q Consensus 198 iG~~~~-~----ll~~~L~~lGi~~~~~~-------------~v~~~-ldk-l~~~~~~~i~-~~L~~lgLs~~ 250 (271)
+|.+-. . ++.+++..+|..+..|. .++.- ++| ++.++.+.++ ++|+.+|++.+
T Consensus 373 vd~~~t~~~L~g~l~~f~~~lg~~~~RfrP~yfPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi~~~ 446 (492)
T PLN02853 373 CDRGLTLGDLIGVLEDFFSRLGMTKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGLPED 446 (492)
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCCCCc
Confidence 986532 2 78899999998654432 12221 121 4667777777 55678888654
No 67
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=98.59 E-value=9.1e-08 Score=94.91 Aligned_cols=124 Identities=24% Similarity=0.340 Sum_probs=95.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc-------c----cccc-----------
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE-------I----RDQL----------- 132 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~-~~Gy~eI~tP~~E~~d~~~~~~g~~-------~----~~~~----------- 132 (271)
..|+.||.|.++.+++.|.+.|++.|. ..|+.+|++|++.+.++|... |+. + .++.
T Consensus 26 ~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aS-Gh~~~F~D~mv~~~~~~~~~RaD~l~e~~~ 104 (551)
T TIGR00389 26 LAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKAS-GHVDNFTDWMVDCKSCKERFRADHLIEEKL 104 (551)
T ss_pred ccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhc-CCccccCCceeecCCCCCEecchHHHHHHh
Confidence 569999999999999999999999994 789999999999999888653 542 0 0000
Q ss_pred ------------------EEEeeC------------------------CCCeEeeCCCChHHH----HHHHHHcCCCCCC
Q 024194 133 ------------------YCFEDR------------------------GNRRVALRPELTPSL----ARLVIQKGKSVSL 166 (271)
Q Consensus 133 ------------------y~f~D~------------------------~G~~laLRPD~T~~i----AR~~a~~~~~~~~ 166 (271)
+.+..+ ++....|||+....| -|.+-.+ ...+
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~--~~kl 182 (551)
T TIGR00389 105 GKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFF--RRKL 182 (551)
T ss_pred hhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhc--CCCC
Confidence 111111 134689999988764 3433332 3469
Q ss_pred CeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCc
Q 024194 167 PLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (271)
Q Consensus 167 P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~ 202 (271)
|+-..+||++||+| .|..| |.|||+|+.+|.|-.++
T Consensus 183 PfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p~ 221 (551)
T TIGR00389 183 PFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHPL 221 (551)
T ss_pred CeeehhhhHhhhcccCcccceEEeehhhhchhheecCcc
Confidence 99999999999999 78877 89999999999997764
No 68
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9e-07 Score=82.72 Aligned_cols=138 Identities=21% Similarity=0.326 Sum_probs=104.7
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccch----H-Hhhhhhccc--cccccEEEeeCCCCeE
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE----A-LFIRKAGEE--IRDQLYCFEDRGNRRV 143 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~----d-~~~~~~g~~--~~~~~y~f~D~~G~~l 143 (271)
+++.+|.- .+.+........+.+.++++|...||+++..|.+|.. | ++... .+. --...|-+.+. .+.+
T Consensus 96 ~dv~lp~~--~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~-dHPARdmqDTFy~~~~-~~~~ 171 (335)
T COG0016 96 IDVTLPGR--RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQ-DHPARDMQDTFYLKDD-REKL 171 (335)
T ss_pred CCcCCCCc--cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCC-CCCcccccceEEEcCC-CCce
Confidence 55555533 6677788899999999999999999999999988753 1 11111 111 12346766542 2278
Q ss_pred eeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH-H----HHHHHHHhCCC
Q 024194 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV-T----VLQEVLRCHSI 215 (271)
Q Consensus 144 aLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~-~----ll~~~L~~lGi 215 (271)
+||.+.|+--||++..+.. .|+|++.+|+|||++.....+.-||+|+..=+++.+-. . ++.++++.++-
T Consensus 172 lLRTHTs~vq~R~l~~~~~---~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg 245 (335)
T COG0016 172 LLRTHTSPVQARTLAENAK---IPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFG 245 (335)
T ss_pred eecccCcHhhHHHHHhCCC---CCceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcC
Confidence 9999999999999988643 39999999999999988888999999999877776532 2 78888888873
No 69
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.5e-06 Score=85.29 Aligned_cols=108 Identities=20% Similarity=0.319 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.-.+.|.++...+|+.+..+||.||+||++-... .+-.++-+.-=.-+.|+-++|. ..|++-+.+.+-..
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkST------PEGARDfLVPSRv~~G~FYALP--QSPQlfKQLLMvsG-- 208 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKST------PEGARDFLVPSRVHPGKFYALP--QSPQLFKQLLMVAG-- 208 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccCC------CccccccccccccCCCceeecC--CCHHHHHHHHHHhc--
Confidence 3456788899999999999999999999996321 2211222211112368899997 67888887776543
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
--|||+|.+|||+|.....|.-||+|+++|.-=.+..+
T Consensus 209 --fdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~ed 246 (585)
T COG0173 209 --FDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEED 246 (585)
T ss_pred --ccceeeeeeeecccccccccCCcceeEeEEeecCCHHH
Confidence 35999999999999988889999999999987665543
No 70
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=98.41 E-value=4.6e-07 Score=84.08 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee----CCCCeEeeCCCChHHHHHHHHHcCCC
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED----RGNRRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D----~~G~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
+.+.++.+.+++.|.++||.||+||+++.... .+...+.|++.- ..++...|+----...=|.++...
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~------~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~-- 73 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPV------TDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGS-- 73 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCC------CCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccC--
Confidence 57889999999999999999999999986531 111223454321 123445555322222333344322
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCc
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA 202 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~ 202 (271)
-|+|+||+|||+|....-|.-||+++++|..+.+-
T Consensus 74 ----~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~~d~ 108 (304)
T TIGR00462 74 ----GPIFQICKVFRNGERGRRHNPEFTMLEWYRPGFDY 108 (304)
T ss_pred ----CCEEEEcCceeCCCCCCCcccHHHhHHHHHHcCCH
Confidence 49999999999998765578899999999877653
No 71
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.39 E-value=3.7e-06 Score=78.76 Aligned_cols=106 Identities=23% Similarity=0.277 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe----eCCCCeEeeCCCChHHHHHHHHHcC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE----DRGNRRVALRPELTPSLARLVIQKG 161 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~----D~~G~~laLRPD~T~~iAR~~a~~~ 161 (271)
-.+.+..|.+.+++.|...||.||.||++..... +. ..+.|.+. +--|+.+-|+.-.-...=++++..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~------~~-~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g- 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC------EG-GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG- 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS------SS-SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc------Cc-cccccccccchhhhcccceecCcChHHHHhhhcccc-
Confidence 4578899999999999999999999999975431 11 34577766 234567778765555555555542
Q ss_pred CCCCCCeEEEEEeceeecCCC-CCCCCcceEEeEEEEEecCcHH
Q 024194 162 KSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 162 ~~~~~P~K~yyig~VfR~e~~-~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|+||+|||+|.. ..-+..||+|+++|.-+.+...
T Consensus 93 -----~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~ 131 (335)
T PF00152_consen 93 -----LERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDD 131 (335)
T ss_dssp -----HSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHH
T ss_pred -----chhhhheecceeccCcccccchhhhhhhhhccccCcHHH
Confidence 2499999999999977 3336779999999999887654
No 72
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.38 E-value=2.4e-06 Score=85.62 Aligned_cols=104 Identities=21% Similarity=0.380 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHHHHcCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D--~~G~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
-.+.+..|...+++.|...||.||+||++-.... .|. .+ |.+.. ..|..+.|+ ..+++-.....-..
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~----eGa--r~--f~vp~~~~~~~~y~L~--qSpQlykq~l~v~G- 205 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP----EGA--RD--YLVPSRVHKGEFYALP--QSPQLFKQLLMVSG- 205 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC----CCC--cc--eeeeeecCCCceeecC--CCHHHHHHHHHhcc-
Confidence 4478899999999999999999999999974221 121 11 32222 256666777 44555443222111
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~ 203 (271)
--|+|+||+|||+|.....|..||+|+++|....+-.
T Consensus 206 ---~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~ 242 (583)
T TIGR00459 206 ---VDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQE 242 (583)
T ss_pred ---cCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHH
Confidence 2499999999999988888889999999999987643
No 73
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.32 E-value=7e-06 Score=77.03 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHH--HHHHHcCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLA--RLVIQKGK 162 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iA--R~~a~~~~ 162 (271)
-.+.+..+...+++.|...||.||+||++-... .|. ..+.|... +..|+...|+ ..+++. ++++..
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~-----~~~--~~~~f~~~~~~~~~~~yL~--~Spql~~k~ll~~g-- 75 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIA-----GGA--AARPFITHHNALDMDLYLR--IAPELYLKRLIVGG-- 75 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCC-----CCc--cceeEEeccCCCCcceeec--cCHHHHHHHHHhcC--
Confidence 357889999999999999999999999996432 111 12344432 2335666666 333443 233322
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCc
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA 202 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~ 202 (271)
--|+|+||+|||.|....-|.-||+|+++|..+.+-
T Consensus 76 ----~~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~ 111 (329)
T cd00775 76 ----FERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADY 111 (329)
T ss_pred ----CCcEEEEeccccCCCCCCCCCCceEEEEEeeecCCH
Confidence 249999999999998766678899999999888643
No 74
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=5.5e-06 Score=79.87 Aligned_cols=139 Identities=24% Similarity=0.321 Sum_probs=109.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
...++.-+.+..+++.+.+.+.+.++..++||.++.+|.+-..++... .|.. ..+++|++.|. .+.|=|.-..|
T Consensus 162 sGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~g-tgqlpkf~e~~y~v~~~---~~~LipTaEvp 237 (429)
T COG0172 162 SGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFG-TGQLPKFEEDLYKVEDP---DLYLIPTAEVP 237 (429)
T ss_pred CCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhc-cCCCCCCcccceEecCC---CEEEEecchhh
Confidence 567888899999999999999999999999999999999999998754 2432 36789998764 79999999999
Q ss_pred HHHHHHHcCCC-CCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCC
Q 024194 153 LARLVIQKGKS-VSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSI 215 (271)
Q Consensus 153 iAR~~a~~~~~-~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi 215 (271)
++-+++..--. .++|+|++-.++|||.|.-. +| |.-||.-+..=.|..+... ...++|+.|++
T Consensus 238 l~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeL 317 (429)
T COG0172 238 LTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELEL 317 (429)
T ss_pred hHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 99988765433 56899999999999999543 34 3446666555555544322 56788999999
Q ss_pred Cc
Q 024194 216 PE 217 (271)
Q Consensus 216 ~~ 217 (271)
+-
T Consensus 318 Py 319 (429)
T COG0172 318 PY 319 (429)
T ss_pred Cc
Confidence 84
No 75
>PLN02734 glycyl-tRNA synthetase
Probab=98.30 E-value=9.2e-07 Score=89.43 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=93.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHH-cCCeeecCCcccchHHhhhhhccc-------------------------
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRL-FGFEEVDFPVLESEALFIRKAGEE------------------------- 127 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~-~Gy~eI~tP~~E~~d~~~~~~g~~------------------------- 127 (271)
.-..|+.||.|.++.+++.|.+.|++.|.. .+.-+|++|++.+..+|..+ |+.
T Consensus 96 GGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kAS-GHvd~F~D~mv~~~~~~~~~RADhlie~ 174 (684)
T PLN02734 96 GGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKAS-GHVDKFTDLMVKDEKTGTCFRADHLLKD 174 (684)
T ss_pred CCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeec-CCcccccceeeEcCCCCcEecchHHHHH
Confidence 356799999999999999999999999954 45569999999997666432 321
Q ss_pred -ccc--------------------------------------------------------ccEEE-eeC-CCCeEeeCCC
Q 024194 128 -IRD--------------------------------------------------------QLYCF-EDR-GNRRVALRPE 148 (271)
Q Consensus 128 -~~~--------------------------------------------------------~~y~f-~D~-~G~~laLRPD 148 (271)
+.+ -||+. +-+ ++....|||+
T Consensus 175 ~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRPE 254 (684)
T PLN02734 175 FCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRPE 254 (684)
T ss_pred HHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceeccc
Confidence 000 01111 111 2346899999
Q ss_pred ChHH----HHHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCc
Q 024194 149 LTPS----LARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (271)
Q Consensus 149 ~T~~----iAR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~ 202 (271)
.... +-|.+-.+ ...+|+-..+||+.||+| .|..| |.|||+|+.+|.|-.++
T Consensus 255 TAQGiFvnFk~l~~~~--~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~ 313 (684)
T PLN02734 255 TAQGIFVNFRDLYYYN--GGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPE 313 (684)
T ss_pred ccchheeeHHHHHHhc--CCCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecCcc
Confidence 8775 45554433 346999999999999999 88888 89999999999997664
No 76
>PRK06462 asparagine synthetase A; Reviewed
Probab=98.27 E-value=4.1e-06 Score=78.76 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.-.+++..|.+.+++.|.+.||.||+||++-....=....|....-..+.+ |-.|+.+-|+.-.-.. -++++...
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~-~~~~~~~yL~~Spql~-k~ll~~g~--- 102 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISI-DFYGVEYYLADSMILH-KQLALRML--- 102 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCcccccc-ccCCCceeeccCHHHH-HHHHHhhc---
Confidence 456889999999999999999999999999754110000111100112222 2246777777554443 44444322
Q ss_pred CCCeEEEEEeceeecCCCCC---CCCcceEEeEEEEEecC
Q 024194 165 SLPLKWFAVGQCWRYERMTR---GRRREHYQWNMDIIGVP 201 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~---Gr~REf~Q~gvEiiG~~ 201 (271)
-|+|+||+|||+|.... -|.-||+++.+|..+.+
T Consensus 103 ---~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d 139 (335)
T PRK06462 103 ---GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGAD 139 (335)
T ss_pred ---CcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCC
Confidence 49999999999998766 57889999999998864
No 77
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=98.27 E-value=5.7e-06 Score=83.15 Aligned_cols=105 Identities=21% Similarity=0.367 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHHHHcCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D--~~G~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
-.+.+..+...+|+.|...||.||+||++-....- |. .+ |.... ..|..+.|+ ..+++......-..
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~e----ga--~~--f~v~~~~~~~~~~~L~--qSpql~kq~l~~~g- 208 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPE----GA--RD--YLVPSRVHPGKFYALP--QSPQLFKQLLMVAG- 208 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCCC----CC--cc--ceecccccCCceeecC--CCHHHHHHHHHhcc-
Confidence 44678999999999999999999999999753210 11 11 32221 256677776 44455443222111
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|++|+|||+|.....|.-||+|+++|.-+.+-.+
T Consensus 209 ---~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~d 246 (588)
T PRK00476 209 ---FDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQED 246 (588)
T ss_pred ---cCceEEEeceeecCCCCCCcCcccccceeeecCCCHHH
Confidence 24999999999999877677669999999999886543
No 78
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=98.24 E-value=9.8e-06 Score=78.65 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.-.+.+..|...+++.|.+.||.||+||++-.... +-..+.|.+. .-|+.+.|+--.-...=+.++..
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~-------eg~~~~f~v~-~~~~~~yL~~Spql~~q~li~~g---- 198 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT-------EGGTELFPIT-YFEREAFLGQSPQLYKQQLMAAG---- 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC-------CCCcceeeeE-ecCCcEEECcCHHHHHHHHHhcc----
Confidence 34578889999999999999999999999863221 1123355542 23455667633333222333332
Q ss_pred CCCeEEEEEeceeecCCCCCC-CCcceEEeEEEEEecCcHH
Q 024194 165 SLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|+||+|||+|..... +.-||+|+++|..+.+..+
T Consensus 199 --~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~d 237 (428)
T TIGR00458 199 --FERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHD 237 (428)
T ss_pred --cCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHH
Confidence 2499999999999977654 5689999999998875433
No 79
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=98.22 E-value=1.8e-05 Score=79.21 Aligned_cols=129 Identities=22% Similarity=0.242 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHH-hhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~-~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
.....+.+.+.+++.+...||.|+.|..|...+. +.. .+.......+++..+ +.+.-+||+-+++++.+.++.+. +
T Consensus 357 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~-~ 434 (552)
T PRK09616 357 RLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK-H 434 (552)
T ss_pred CCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhcc-C
Confidence 3445677788899999999999999999987754 432 222111136777776 77889999999999999998876 5
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCC
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~ 216 (271)
...|+|+|.+|+||+.+..+....+|+.+.++-+.|.+ +.. ++..+|..+|++
T Consensus 435 ~~~~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~lgi~ 492 (552)
T PRK09616 435 REYPQKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLRELGIE 492 (552)
T ss_pred CCCCeeEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHcCCe
Confidence 57899999999999875422224579999999999963 332 788888999984
No 80
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=98.22 E-value=9.1e-06 Score=79.33 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe--------eCCCCeEeeCCCChHHHHHH
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--------DRGNRRVALRPELTPSLARL 156 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~--------D~~G~~laLRPD~T~~iAR~ 156 (271)
.-.+.+..|...+++.|...||.||+||++..... + -..+.|.+. +--|..+.|+--...-. ++
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~------e-g~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~ 202 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDC------E-GAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EA 202 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCC------C-CCCCceEeecccccccccccCCCcccccCHHHHH-HH
Confidence 34578899999999999999999999999975421 1 123456552 22356666664443333 33
Q ss_pred HHHcCCCCCCCeEEEEEeceeecCCCCC-CCCcceEEeEEEEEecCcH
Q 024194 157 VIQKGKSVSLPLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 157 ~a~~~~~~~~P~K~yyig~VfR~e~~~~-Gr~REf~Q~gvEiiG~~~~ 203 (271)
++.. --|+|+|++|||+|.... -+.-||+|+++|..+.+-.
T Consensus 203 l~~g------~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~ 244 (450)
T PRK03932 203 YAMA------LGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLE 244 (450)
T ss_pred HHhc------cCCeEEeeeccccCCCCCccccccccccceEEeccCHH
Confidence 3322 249999999999997633 3568999999998877543
No 81
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=98.21 E-value=1.6e-05 Score=78.39 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEE-eeCCCCeEeeCCCChHHHH--HHHHHcC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLA--RLVIQKG 161 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f-~D~~G~~laLRPD~T~~iA--R~~a~~~ 161 (271)
.-.+.+..|...+++.|...||.||+||++.... .|. ....|.. .+--+....|+ ..+++. ++++..
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~Ga--~a~pF~t~~~~~~~~~yL~--~Spql~lk~l~v~g- 239 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GGA--AARPFITHHNALDIDLYLR--IAPELYLKRLIVGG- 239 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CCc--cceeeeeccccCCCceEec--cCHHHHHHHHHhcc-
Confidence 3457888999999999999999999999996321 121 1234443 23234555576 333333 333332
Q ss_pred CCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCc
Q 024194 162 KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA 202 (271)
Q Consensus 162 ~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~ 202 (271)
--|+|+||+|||+|....-|.-||+|+++|..+.+-
T Consensus 240 -----~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~ 275 (491)
T PRK00484 240 -----FERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADY 275 (491)
T ss_pred -----CCcEEEEecceecCCCCCCcCCceEEEEEEEecCCH
Confidence 249999999999998776678899999999887643
No 82
>PLN02903 aminoacyl-tRNA ligase
Probab=98.19 E-value=1e-05 Score=81.74 Aligned_cols=106 Identities=20% Similarity=0.356 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeCCCChHHHHHHHHHcCCC
Q 024194 86 DMRLRNWLFHNFQEVSRL-FGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~-~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D-~~G~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
-.+.+..+...+++.|.. .||.||+||++-.... . |. .+.+.... ..|..+.|+ .-+++-.....-..
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~--e--Ga---rdf~v~~~~~~g~~y~L~--qSPQlykQ~Lm~~G- 271 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP--E--GA---RDYLVPSRVQPGTFYALP--QSPQLFKQMLMVSG- 271 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC--C--CC---cccEEeeecCCCcccccC--CCHHHHHHHHHhcc-
Confidence 447788999999999996 9999999999974321 1 11 11211111 246666676 34444443222111
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|+||+|||+|.....|.-||+|+++|.-+.+-.+
T Consensus 272 ---~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d~~d 309 (652)
T PLN02903 272 ---FDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLED 309 (652)
T ss_pred ---CCcEEEEehhhccCCCCCCcccceeeeeeeecCCCHHH
Confidence 24999999999999887778899999999998876433
No 83
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=98.19 E-value=1.5e-05 Score=77.61 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.-.+.+..|...+++.|.+.||.||+||++-.... . | ..+.|.+. --|..+.|+--.-.-.=++++. .
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---e-g---~~~~f~~~-~~~~~~~L~~Spql~~q~l~~~-g--- 201 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT---E-G---GAELFPID-YFEKEAYLAQSPQLYKQMMVGA-G--- 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC---C-C---CcceEeEE-ecCCceEecCCHHHHHHHHHhc-C---
Confidence 45688999999999999999999999999953211 1 1 12345542 2456677764433333223322 1
Q ss_pred CCCeEEEEEeceeecCCCCCC-CCcceEEeEEEEEecCc
Q 024194 165 SLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPA 202 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEiiG~~~ 202 (271)
--|+|+|++|||+|..... +.-||+|+++|..+.++
T Consensus 202 --~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~ 238 (437)
T PRK05159 202 --FERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDD 238 (437)
T ss_pred --CCcEEEEeceeeCCCCCCcccchhhheeeeeeeeccc
Confidence 2499999999999987654 56799999999988763
No 84
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=98.17 E-value=1.4e-05 Score=81.49 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.-.+.+..+...+|+.|...||.||+||++-.... .|. ..-++...-..|..+.|+ ..+++-........
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~----eGA--r~~~~p~~~~~~~~y~L~--qSPQlykq~lm~~G-- 223 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP----EGA--RDYLVPSRIHPKEFYALP--QSPQLFKQLLMIAG-- 223 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC----CCC--cceEEeeecCCCcceecC--CCHHHHHHHHHhcc--
Confidence 34577889999999999999999999999974221 111 111111111245566666 44455443322111
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|+|++|||+|.....|.-||+|+++|.-+.+..+
T Consensus 224 --~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d~~d 261 (706)
T PRK12820 224 --FERYFQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEF 261 (706)
T ss_pred --CCcEEEEechhcCCCCCCCcCccccccceeeccCCHHH
Confidence 24999999999999877777789999999998876443
No 85
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.7e-05 Score=71.04 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEE--EeeC---CCCeEeeCCCChHHHHHHHHH
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYC--FEDR---GNRRVALRPELTPSLARLVIQ 159 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~--f~D~---~G~~laLRPD~T~~iAR~~a~ 159 (271)
+..-.+.+|...+|..|...||.||+||++...- +.+..-..|+ ++.+ ++..+-|.+----.+=|.+|.
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~------vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAa 87 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAP------VTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAA 87 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCC------CCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHc
Confidence 3467899999999999999999999999986422 2221111222 2222 356788877777778888886
Q ss_pred cCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchhh-HHHHHHhhh
Q 024194 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFGK-VCIIIDKIE 231 (271)
Q Consensus 160 ~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~~-v~~~ldkl~ 231 (271)
.. -++|++|+|||++..+.-+.-||+.+...-+|.+-.. ++..+++.-+.+...+++ ....+ .++
T Consensus 88 g~------~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~~E~ls~~eaF~r~~-gid 160 (322)
T COG2269 88 GS------GPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVEAERLSYQEAFLRYL-GID 160 (322)
T ss_pred cC------CcchhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCCcceeeHHHHHHHHh-CCC
Confidence 42 4799999999999765556779999999999887543 455555554543322221 11111 111
Q ss_pred c--CCHHHHHHHHHhCCCC---HHHHHHHHHHHh
Q 024194 232 K--LPLDVIKNDLKSAGMS---EAAIEELLRVLS 260 (271)
Q Consensus 232 ~--~~~~~i~~~L~~lgLs---~~~~~~L~~~l~ 260 (271)
. ...+.+++.++..|++ ++..+.|.+++-
T Consensus 161 ~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf 194 (322)
T COG2269 161 PLSADKTELREAAAKLGLSAATDEDWDTLLQLLF 194 (322)
T ss_pred cccccHHHHHHHHHhcCCCCCCccCHHHHHHHHH
Confidence 1 2356777777777775 444666666553
No 86
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=98.16 E-value=1.4e-05 Score=79.00 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEE-eeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f-~D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+++.|...||.||+||++... ..|.. ..-|.. .+.-+..+.||----..+=|+++...
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~-----~gGa~--a~pF~t~~~~~~~~~yL~~SpELylKrlivgG~--- 252 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGGAS--ARPFITHHNALDLDMYLRIAPELYLKRLVVGGF--- 252 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec-----CCCCc--ccceecccccCCcceeeecCHHHHHHHHHhccC---
Confidence 45788999999999999999999999999642 11221 112321 12234556676433334445554422
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCc
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA 202 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~ 202 (271)
-|+|+||+|||+|....-|.-||+|+++|.-+.+-
T Consensus 253 ---~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~ 287 (505)
T PRK12445 253 ---ERVFEINRNFRNEGISVRHNPEFTMMELYMAYADY 287 (505)
T ss_pred ---CcEEEEehhccCCCCCCCcCcccceeeeeeecCCH
Confidence 49999999999998766678899999999998753
No 87
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=98.09 E-value=2.8e-05 Score=78.70 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D-~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+++.|...||.||+||++.... ++. ....|.... ..+..+.||----..+=|+++..
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~------~ga-~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG---- 300 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA------SGA-NAKSFVTHHNANAMDLFLRVAPELHLKQCIVGG---- 300 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC------CCC-CccceEeecccCCCCEEecCChHHHHHHHhhcc----
Confidence 447889999999999999999999999995321 111 123454321 12445556633222333344332
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~ 203 (271)
--|+|+||+|||+|....-|.-||+|+++|..+.+-.
T Consensus 301 --~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~ 337 (659)
T PTZ00385 301 --MERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYE 337 (659)
T ss_pred --cCCEEEEeceecCCCCCCCccccccceeeeeecCCHH
Confidence 2499999999999977766788999999998877533
No 88
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=98.07 E-value=2.9e-05 Score=77.98 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+|+.|...||.||+||++.... + |.. ..-|... ..-+..+.||----..+=|+++...
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~----G-GA~--a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~--- 321 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA----G-GAN--ARPFITHHNDLDLDLYLRIATELPLKMLIVGGI--- 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC----C-ccc--ceeEEecccCCCcceEEeecHHHHHHHHHHhCC---
Confidence 447889999999999999999999999997541 1 221 1122210 1124556777433334445555432
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~ 201 (271)
-|+|+||+|||+|....-|.-||+|+.+|.-+.+
T Consensus 322 ---~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~d 355 (585)
T PTZ00417 322 ---DKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYAD 355 (585)
T ss_pred ---CCEEEEcccccCCCCCCCccceeeeeeeeeecCC
Confidence 4999999999999876667889999999988764
No 89
>PLN02502 lysyl-tRNA synthetase
Probab=98.04 E-value=2.6e-05 Score=77.89 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+++.|...||.||+||++.... + |. ....|... +.-+..+.||----..+=|+++...
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----g-GA--~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~--- 297 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA----G-GA--AARPFVTHHNDLNMDLYLRIATELHLKRLVVGGF--- 297 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC----C-Cc--cccceeeecccCCcceeeecCHHHHHHHHHHhcc---
Confidence 447888999999999999999999999996432 1 21 12234322 2235667776333333334454422
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~ 201 (271)
-|+|+||+|||+|....-|.-||+|+++|....+
T Consensus 298 ---~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d 331 (553)
T PLN02502 298 ---ERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYAD 331 (553)
T ss_pred ---CCEEEEcCeeeCCCCCCccccceeehhhhhhcCC
Confidence 4999999999999776667889999999988764
No 90
>PLN02850 aspartate-tRNA ligase
Probab=98.00 E-value=2.5e-05 Score=77.74 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
-.+++..|...+++.|...||.||+||++-.... . | ..+.|++ +-.|+...|+--...-.=+.++...
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~--e--g---ga~~F~v-~yf~~~~~L~qSpql~kq~li~~g~---- 291 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS--E--G---GSAVFRL-DYKGQPACLAQSPQLHKQMAICGDF---- 291 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC--c--c---ccceeee-ccCCcceecCCCHHHHHHHHHHhcC----
Confidence 3477889999999999999999999999943221 1 1 1235655 3357777787333332222333222
Q ss_pred CCeEEEEEeceeecCCCCCC-CCcceEEeEEE-EEecC
Q 024194 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMD-IIGVP 201 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvE-iiG~~ 201 (271)
-|+|+||+|||+|..... +.-||+|+++| -|+.+
T Consensus 292 --~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~ 327 (530)
T PLN02850 292 --RRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEH 327 (530)
T ss_pred --CceEEEecccccCCCCCCccchhhccchhhhhhhcC
Confidence 399999999999975333 56899999999 46643
No 91
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.98 E-value=4.4e-05 Score=74.66 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--------CCCCeEeeCCCChHHHHHHH
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--------RGNRRVALRPELTPSLARLV 157 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D--------~~G~~laLRPD~T~~iAR~~ 157 (271)
-.+.+..|...+++.|...||.||+||++-.... . | ..+.|.+.. --|+...|+--. ++-..+
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~--e--g---~~~~F~v~~~~~~~~~~~~~~~~yL~~Sp--ql~lq~ 205 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC--E--G---AGELFRVSTDGIDFSQDFFGKEAYLTVSG--QLYLET 205 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC--C--C---CCCceEecccccccchhccCCccccccCH--HHHHHH
Confidence 3578999999999999999999999999975331 1 1 133454431 124444454322 222222
Q ss_pred HHcCCCCCCCeEEEEEeceeecCCCCCC-CCcceEEeEEEEEecCc
Q 024194 158 IQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPA 202 (271)
Q Consensus 158 a~~~~~~~~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEiiG~~~ 202 (271)
.... --|+|+||+|||+|..... +.-||+|+++|.-+.+-
T Consensus 206 l~~g-----~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~ 246 (453)
T TIGR00457 206 YALA-----LSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANL 246 (453)
T ss_pred Hhhc-----ccCceEeeeccccCCCCCCcCcchhccceeeeecCCH
Confidence 2111 2499999999999977643 56899999999887753
No 92
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=97.97 E-value=5e-05 Score=65.94 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCeE
Q 024194 91 NWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (271)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K 169 (271)
+.+++.+++.+...||.|+.|..|...+.... .+.. .+...++.++ +.+.=+||+-+.+++.+.++.+.+....|+|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~-~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~ 80 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGG-LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLR 80 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCC-CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEe
Confidence 45678889999999999999999977644332 1211 2246788877 7778899999999999999988766668999
Q ss_pred EEEEeceeecCCCCCCCCcceEEeEEEEEecC------------cHH----HHHHHHHhCCC
Q 024194 170 WFAVGQCWRYERMTRGRRREHYQWNMDIIGVP------------AVT----VLQEVLRCHSI 215 (271)
Q Consensus 170 ~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~------------~~~----ll~~~L~~lGi 215 (271)
+|.+|+||..+.. ..+|..-+++-+-|.. +.. ++..+|..+|+
T Consensus 81 lFEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~ 139 (198)
T cd00769 81 LFEIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGI 139 (198)
T ss_pred EEEeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCC
Confidence 9999999976431 3457777777788853 211 77888888886
No 93
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.96 E-value=3.8e-05 Score=75.87 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+++.|...||.||+||++.... .|. .-+.|... +.-|..+.||----..+=|+++...
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga--~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~--- 240 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGA--NARPFITHHNALDMDLYLRIAPELYLKRLIVGGF--- 240 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCc--cceeEEeecccCCCceEEecCHHHHHHHHHhCCC---
Confidence 446888999999999999999999999996431 121 12234332 1234556677433333334544322
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~ 201 (271)
-|+|+||+|||+|....-|.-||+++.+|.-..+
T Consensus 241 ---~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 274 (496)
T TIGR00499 241 ---EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYAD 274 (496)
T ss_pred ---CceEEEecceecCCCCCcccchhheeehhhhcCC
Confidence 4999999999999776667889999999988764
No 94
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.90 E-value=0.00011 Score=73.70 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchH
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d 118 (271)
-.++|..+...+++.|...||.+|+||++-..+
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 558899999999999999999999999996544
No 95
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=3.2e-05 Score=75.06 Aligned_cols=105 Identities=22% Similarity=0.356 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHH-HHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 87 MRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf-~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
.+++..+...+++.| .++||.||+||++ |.+.-|.. .+-+.--..+.|..++|. ..++--+.+.+...
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtL-----FkrTPgGA-~EFvVPtr~~~g~FYaLp--QSPQQfKQlLMvsG--- 246 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTL-----FKRTPGGA-REFVVPTRTPRGKFYALP--QSPQQFKQLLMVSG--- 246 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcch-----hccCCCcc-ceeecccCCCCCceeecC--CCHHHHHHHHHHhc---
Confidence 366777888888887 5689999999997 33322221 222222222358888885 55665555554332
Q ss_pred CCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH
Q 024194 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~ 203 (271)
--|||+|++|||+|.....|.-||+|+++|.-=.+..
T Consensus 247 -idrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~~~ 283 (628)
T KOG2411|consen 247 -IDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTDQE 283 (628)
T ss_pred -hhhHHhHHhhhcccccCcccCCcceeeeeEEeccCHH
Confidence 4599999999999988888999999999999766553
No 96
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.82 E-value=5.8e-05 Score=73.38 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=65.0
Q ss_pred CCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCC-CCCCCCcceEEeEEEEEecCcH-H----HHHHHHHhC
Q 024194 140 NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER-MTRGRRREHYQWNMDIIGVPAV-T----VLQEVLRCH 213 (271)
Q Consensus 140 G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~-~~~Gr~REf~Q~gvEiiG~~~~-~----ll~~~L~~l 213 (271)
-..++||+.+|+...|.+.......+.|+|+|.+|+|||++. ....+..+|+|+.+=++|.+-. . ++..+|+.+
T Consensus 180 s~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 180 STTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred hhCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 456799999999999988752333468999999999999995 4667899999999999998642 2 888999999
Q ss_pred CCCccch
Q 024194 214 SIPEHLF 220 (271)
Q Consensus 214 Gi~~~~~ 220 (271)
|..+..|
T Consensus 260 G~~~vRF 266 (533)
T TIGR00470 260 GFTKFRF 266 (533)
T ss_pred CCceEEe
Confidence 9864333
No 97
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.79 E-value=8.3e-05 Score=74.25 Aligned_cols=102 Identities=20% Similarity=0.288 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
-.+.+..|...+++.|...||.||+||.+-.... . | ..+.|++ +--|+...|+ ..+++-..++....
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~--e--g---ga~~F~v-~yf~~~~~L~--qSpql~kq~li~~g--- 278 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS--E--G---GANVFKL-EYFNRFAYLA--QSPQLYKQMVLQGD--- 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC--C--c---ccccccc-ccCCCCeecC--CCHHHHHHHHHhcC---
Confidence 4477889999999999999999999999865331 1 1 1234554 2235666776 33444443332211
Q ss_pred CCeEEEEEeceeecCCCCCC-CCcceEEeEEEE-EecC
Q 024194 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDI-IGVP 201 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEi-iG~~ 201 (271)
--|+|+||+|||+|..... |.-||+|+++|+ |+.+
T Consensus 279 -~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~ 315 (550)
T PTZ00401 279 -VPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEH 315 (550)
T ss_pred -CCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCC
Confidence 2499999999999976533 567999999986 4543
No 98
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.73 E-value=0.0001 Score=79.03 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+++.|...||.||+||++...+ |+. .-+.|... +.-+..+.||----.-+=|+++..
T Consensus 769 ~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~------gGa-~a~pF~t~~~~~~~~~yLriSPELylKrLivgG---- 837 (1094)
T PRK02983 769 LLRARSAVVRAVRETLVARGFLEVETPILQQVH------GGA-NARPFVTHINAYDMDLYLRIAPELYLKRLCVGG---- 837 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC------CCc-ccceeEeeecCCCccchhhcChHHHHHHHHhcc----
Confidence 346788999999999999999999999996322 211 12335331 223444555532222333344332
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCc
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA 202 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~ 202 (271)
--|+|+||++||+|....-|.-||+++++|.-..+-
T Consensus 838 --~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy 873 (1094)
T PRK02983 838 --VERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADY 873 (1094)
T ss_pred --cCceEEEcceecCCCCCCCccccccchhhhhhcCCH
Confidence 249999999999997766678899999999887653
No 99
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00016 Score=69.30 Aligned_cols=137 Identities=17% Similarity=0.278 Sum_probs=101.4
Q ss_pred CCCCCC--ChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChHH
Q 024194 77 KGTRDF--PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 77 ~G~~d~--lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
.|-+-| .+..+.+-..+.+...+.+.+.||..|.||.|...|+.... |. ...++.|+.+|. |....|-..--.|
T Consensus 173 sG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~c-g~~~~~d~~~~y~ld~-~~~~~LiaTaE~p 250 (455)
T KOG2509|consen 173 SGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKC-GQLPRFDEEQYYVLDG-GDEKYLIATAEQP 250 (455)
T ss_pred ccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHh-ccCcCCCcceEEeecC-CccceeEeeccch
Confidence 455444 45677888899999999999999999999999999998754 42 235678888884 4666777777779
Q ss_pred HHHHHHHcC-CCCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcHH-----------HHHHHHHhC
Q 024194 153 LARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT-----------VLQEVLRCH 213 (271)
Q Consensus 153 iAR~~a~~~-~~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~~-----------ll~~~L~~l 213 (271)
+|-+.+... ...++|+|+.-.++|||.|.-. +| |.-||.- +|.|...+++ .-.+++++|
T Consensus 251 lAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~K--VE~Fvit~Pe~S~~~~eEmi~~~eef~qsL 328 (455)
T KOG2509|consen 251 LAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEK--VEQFVITGPEDSWEMLEEMINNQEEFYQSL 328 (455)
T ss_pred hhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeee--eEEEEecCcchhHHHHHHHHHHHHHHHHHh
Confidence 998877554 2357999999999999999532 34 3346655 5566555443 456789999
Q ss_pred CCCc
Q 024194 214 SIPE 217 (271)
Q Consensus 214 Gi~~ 217 (271)
||+-
T Consensus 329 gip~ 332 (455)
T KOG2509|consen 329 GLPY 332 (455)
T ss_pred CCce
Confidence 9985
No 100
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.70 E-value=0.00028 Score=70.63 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-------C--------------------
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-------G-------------------- 139 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-------~-------------------- 139 (271)
.+++..+...+++.|..+||.||+||++-..+.= | ..++|.+... +
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~E----G---A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~d 298 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDCE----G---AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQD 298 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCCC----c---cccCceeeeccccccccccccccccccCcccccccchh
Confidence 3778889999999999999999999999754321 1 2345544210 0
Q ss_pred --CC--eEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCC-CCcceEEeEEEEEecC
Q 024194 140 --NR--RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (271)
Q Consensus 140 --G~--~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEiiG~~ 201 (271)
|+ .|...|.+-..+ ++.. =-|+|++|++||.|..... +.-||||+++|+-..+
T Consensus 299 yF~~~~~LtvS~QL~~E~---~~~~------l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~d 356 (565)
T PLN02603 299 FFGKPAFLTVSGQLNGET---YATA------LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 356 (565)
T ss_pred hhCcceeeccCchHHHHH---HHhc------ccceEEEecceeCCCCCCccccccceeeeeeeecCC
Confidence 11 111111111121 1221 1489999999999987644 5689999999986654
No 101
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00022 Score=68.93 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCC-CeEeeCCCChHHHHHHHHHcCCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGN-RRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G-~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
.-++++..+...+++.|...||.+|.||.+-..+. +-..++|++.--+. --|+-.|.+-.+++- ...
T Consensus 132 Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~-------EGg~elF~v~yf~~~a~LtqS~QLyke~~~---~al-- 199 (435)
T COG0017 132 AVFKIRSSILRAIREFFYENGFTEVHTPIITASAT-------EGGGELFKVDYFDKEAYLTQSPQLYKEALA---AAL-- 199 (435)
T ss_pred HHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC-------CCCceeEEEeecCcceEEecCHHHHHHHHH---HHh--
Confidence 35688999999999999999999999999975443 12346777632211 223333333333322 112
Q ss_pred CCCCeEEEEEeceeecCCCCCC-CCcceEEeEEEEEecCc
Q 024194 164 VSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPA 202 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEiiG~~~ 202 (271)
-|+|.+|++||.|+.... +..|||++++|+-..+-
T Consensus 200 ----~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~ 235 (435)
T COG0017 200 ----ERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADL 235 (435)
T ss_pred ----CceEEecCceecCCCCCcchhhhHheecceeccCcH
Confidence 389999999999976544 48999999999998873
No 102
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.64 E-value=0.0005 Score=68.99 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchH
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d 118 (271)
-.+++..+...+++.|...||.||+||++-..+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 457888999999999999999999999996543
No 103
>PLN02788 phenylalanine-tRNA synthetase
Probab=97.61 E-value=0.00072 Score=65.07 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=91.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHc---CCeeec--CCcccchHHhhhh-hccc----cccccEEEeeCCCCeEeeCCCC
Q 024194 80 RDFPPEDMRLRNWLFHNFQEVSRLF---GFEEVD--FPVLESEALFIRK-AGEE----IRDQLYCFEDRGNRRVALRPEL 149 (271)
Q Consensus 80 ~d~lp~e~~~~~~i~~~l~~vf~~~---Gy~eI~--tP~~E~~d~~~~~-~g~~----~~~~~y~f~D~~G~~laLRPD~ 149 (271)
+.++.....-...+.+.+++.|... ||++++ .|+...+..|..- ...+ -....|-+. ...+||...
T Consensus 60 ~~l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~----~~~lLRTHT 135 (402)
T PLN02788 60 MQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD----AQTVLRCHT 135 (402)
T ss_pred ccCCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec----CCccccCCC
Confidence 4556666777888999999999887 999998 5666554444321 0111 123456552 358999999
Q ss_pred hHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC------c--------HH---HHHHHHHh
Q 024194 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP------A--------VT---VLQEVLRC 212 (271)
Q Consensus 150 T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~------~--------~~---ll~~~L~~ 212 (271)
|+--+|++.+. .| |++..|+|||++.....++-+|+|+..-+++.. + .. ++..++..
T Consensus 136 Sa~q~~~l~~~-----~~-~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~ 209 (402)
T PLN02788 136 SAHQAELLRAG-----HT-HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARH 209 (402)
T ss_pred cHHHHHHHHhC-----CC-cEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHH
Confidence 99999988752 13 999999999999888889999999998888621 1 11 67777777
Q ss_pred C-CCC
Q 024194 213 H-SIP 216 (271)
Q Consensus 213 l-Gi~ 216 (271)
+ |+.
T Consensus 210 lfg~~ 214 (402)
T PLN02788 210 LFGDV 214 (402)
T ss_pred hcCCC
Confidence 7 774
No 104
>PLN02532 asparagine-tRNA synthetase
Probab=97.59 E-value=0.00048 Score=69.61 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccch
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE 117 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~ 117 (271)
-.+.|..+...+++.|..+||.+|+||++-..
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s 265 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeccc
Confidence 45789999999999999999999999999654
No 105
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=4.1e-05 Score=71.91 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHh------hhhhccc--cccccEEEeeC---------------------
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALF------IRKAGEE--IRDQLYCFEDR--------------------- 138 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~------~~~~g~~--~~~~~y~f~D~--------------------- 138 (271)
.-+-++++.+|.+|-..||.|+-|--+-...-| ... .+. -...+|-+.|+
T Consensus 212 HPLmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQ-qHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G 290 (483)
T KOG2784|consen 212 HPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQ-QHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQG 290 (483)
T ss_pred chHHHHHHHHHHHHHHccccccccccchhhccccchhhcCcc-cCCccccccceEecChhhcccCCHHHHHHHHHHHhcC
Confidence 446778889999999999999977654332222 110 000 01123322221
Q ss_pred --------------CCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 139 --------------GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 139 --------------~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
..+..+||...|+--||++-...+..-.|.|+|.|.+|||+|.-...+.-||+|+..-|.+..-..
T Consensus 291 ~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltL 370 (483)
T KOG2784|consen 291 GYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTL 370 (483)
T ss_pred CcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcH
Confidence 124679999999999999876655556799999999999999888889999999987776654321
Q ss_pred -----HHHHHHHhCCCCccchh
Q 024194 205 -----VLQEVLRCHSIPEHLFG 221 (271)
Q Consensus 205 -----ll~~~L~~lGi~~~~~~ 221 (271)
++.+++.++|+++-.|.
T Consensus 371 gdLig~l~~ff~~lg~tnlrfK 392 (483)
T KOG2784|consen 371 GDLIGILMEFFTKLGATNLRFK 392 (483)
T ss_pred HHHHHHHHHHHhccCCcccccc
Confidence 78899999999985553
No 106
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=97.36 E-value=0.0024 Score=64.00 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHh-hhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALF-IRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKS 163 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~-~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~ 163 (271)
.....+.+.+.+++.+...||.|+.|-.|...+.. .. .+.. .++..++.++ +.+.=+||+-+.+++.+.++.+. +
T Consensus 360 ~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~-~~~~-~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~-~ 436 (551)
T TIGR00471 360 RLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR-MRIE-DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK-H 436 (551)
T ss_pred CcChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHH-hccC-CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc-c
Confidence 34456777888999999999999999988776432 32 2211 2245777776 77888999999999999998876 5
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCC
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~ 216 (271)
...|+|+|.+|+||..+....-..+++..+++-+.|.. +.. ++..+|..+|++
T Consensus 437 ~~~~~~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l~i~ 494 (551)
T TIGR00471 437 HELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARELGIE 494 (551)
T ss_pred CCCCeeEEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 67899999999999653211102334478888888843 333 788888999884
No 107
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=97.03 E-value=0.0038 Score=63.19 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHH-hhhhhccccc-cccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIR-DQLYCFEDR-GNRRVALRPELTPSLARLVIQKGK 162 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~-~~~~~g~~~~-~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~ 162 (271)
.....+++.+.+++.+...||.|+.|-+|-..+. +.. .+.... +...++.++ +.+.-+||+.+.+++...++.+..
T Consensus 395 ~~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~ 473 (597)
T PLN02265 395 KQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKD 473 (597)
T ss_pred CCCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhc
Confidence 3445678888999999999999999998877644 432 221111 135677776 677789999999999999988765
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCC
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~ 216 (271)
. +.|+|+|.+|+||-.+....-..+|..-+++-+.|.. +.+ ++..+|..+|++
T Consensus 474 ~-~~p~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 474 A-PKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred C-CCCeeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHcCCc
Confidence 3 4599999999999654221111257778888888854 333 788888999985
No 108
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.00034 Score=67.83 Aligned_cols=124 Identities=23% Similarity=0.301 Sum_probs=91.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHH-HHcCCeeecCCcccchHHhhhhhccc-----------ccccc-----------
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEE-----------IRDQL----------- 132 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf-~~~Gy~eI~tP~~E~~d~~~~~~g~~-----------~~~~~----------- 132 (271)
..|.+||.|.++.....|.+.||+.| -.-+--||+.|++.+++++... |+- ...+.
T Consensus 35 VsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaS-GHVdkF~D~mvkD~ktGecfRADHLvk~~~ 113 (599)
T KOG2298|consen 35 VSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKAS-GHVDKFADWMVKDEKTGECFRADHLVKDAE 113 (599)
T ss_pred cccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcc-cchhhhhHHHhcCccccceehhhHHHHHHH
Confidence 46999999999999999999999999 4478889999999998877542 431 00000
Q ss_pred ------------------------------------EEE----------------------eeC-CCCeEeeCCCChHH-
Q 024194 133 ------------------------------------YCF----------------------EDR-GNRRVALRPELTPS- 152 (271)
Q Consensus 133 ------------------------------------y~f----------------------~D~-~G~~laLRPD~T~~- 152 (271)
|.+ +.+ +|-..-|||+....
T Consensus 114 ~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~ 193 (599)
T KOG2298|consen 114 ERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQGQ 193 (599)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccccc
Confidence 111 122 33456799987664
Q ss_pred ---HHHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCc
Q 024194 153 ---LARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (271)
Q Consensus 153 ---iAR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~ 202 (271)
+-|++--+ ...+|+--.+||+.||+| .|..| |.|||+++.+|-|-.+.
T Consensus 194 FlNFkrlle~N--~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEHFvdP~ 247 (599)
T KOG2298|consen 194 FLNFKRLLEFN--QGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEHFVDPL 247 (599)
T ss_pred cccHHHHHHhc--CCCCcchHHHhchHhhhccCcccCceeEEEeehHHhhccCCCC
Confidence 45555433 346899999999999999 66667 88999999999997754
No 109
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0045 Score=60.70 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEE-eeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f-~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~ 166 (271)
..|.+|.+.+|+.+...||-||+||++..- .|... -.-|.. .+--.-.+.||=-...-+=|.+..-.
T Consensus 181 ~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~GGA~-ArPF~ThhNald~dlyLRIApELyLKRliVGG~----- 248 (502)
T COG1190 181 IKRSKIIRAIREFLDDRGFLEVETPMLQPI------PGGAA-ARPFITHHNALDMDLYLRIAPELYLKRLIVGGF----- 248 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCeEecccccccc------CCCcc-cccceeeecccCCceEEeeccHHHHHHHHhcCc-----
Confidence 567788999999999999999999999742 23221 222322 22234568888766677778776532
Q ss_pred CeEEEEEeceeecCCCCCCCCcceEEeEE
Q 024194 167 PLKWFAVGQCWRYERMTRGRRREHYQWNM 195 (271)
Q Consensus 167 P~K~yyig~VfR~e~~~~Gr~REf~Q~gv 195 (271)
-|+|.||++||+|.....+.-||+.+.+
T Consensus 249 -erVfEIgr~FRNEGid~tHNPEFTmlE~ 276 (502)
T COG1190 249 -ERVFEIGRNFRNEGIDTTHNPEFTMLEF 276 (502)
T ss_pred -hhheeeccccccCCCccccCcchhhHHH
Confidence 3999999999999766666667765543
No 110
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0013 Score=63.71 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D-~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-...|.+|+..+|+.+...||-||+||++.. ..|.... .-|-..+ .-+..|.||=---.-+-+++..-
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~------iaGGA~A-kPFIT~hndldm~LylRiAPEL~lK~LvVGG---- 292 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNM------IAGGATA-KPFITHHNDLDMDLYLRIAPELYLKMLVVGG---- 292 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhcc------ccCcccc-CceeecccccCcceeeeechHHHHHHHHhcc----
Confidence 3477889999999999999999999999863 2243322 2232222 23445777744444455555542
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEE
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMD 196 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvE 196 (271)
--|+|.||++||+|--...+--||+-|.+.
T Consensus 293 --ldrVYEIGr~FRNEGIDlTHNPEFTTcEfY 322 (560)
T KOG1885|consen 293 --LDRVYEIGRQFRNEGIDLTHNPEFTTCEFY 322 (560)
T ss_pred --HHHHHHHHHHhhhcCcccccCCCcchHHHH
Confidence 249999999999996666676677766543
No 111
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=96.19 E-value=0.035 Score=58.14 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEE
Q 024194 95 HNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAV 173 (271)
Q Consensus 95 ~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyi 173 (271)
+.+++.+..+||.|+.|-+|...+.+.. .+....+...++.++ +.+.=+||+-+.+++.+.++.+.+....++|+|.+
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEi 576 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEK-FNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEI 576 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHh-hcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 5788999999999999999977744332 232211125777776 66778999999999999999887666788999999
Q ss_pred eceeecCCCCCCCCcceEEeEEEEEecC------------cHH----HHHHHHHhCCCC
Q 024194 174 GQCWRYERMTRGRRREHYQWNMDIIGVP------------AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 174 g~VfR~e~~~~Gr~REf~Q~gvEiiG~~------------~~~----ll~~~L~~lGi~ 216 (271)
|.||..... . .+|...+++-+-|.. +.. ++..+|..+|+.
T Consensus 577 G~V~~~~~~--~-~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 577 GKVFAKDGL--G-VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred ecccCCCCC--C-cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 999954221 1 567777887787742 222 777888888875
No 112
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.0025 Score=60.52 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=62.6
Q ss_pred CCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCC-CCCCCCcceEEeEEEEEecCcH-----HHHHHHHHhC
Q 024194 140 NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER-MTRGRRREHYQWNMDIIGVPAV-----TVLQEVLRCH 213 (271)
Q Consensus 140 G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~-~~~Gr~REf~Q~gvEiiG~~~~-----~ll~~~L~~l 213 (271)
...+.||..||...--.+..-....+.|+|+|.|.+|||.|+ ....|.--++-+-+-+++.+-. .++..+|..+
T Consensus 180 s~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qf 259 (536)
T COG2024 180 SSTLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQF 259 (536)
T ss_pred CCceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHh
Confidence 457899999998765555554455679999999999999984 3455777788888888886532 2889999999
Q ss_pred CCCccch
Q 024194 214 SIPEHLF 220 (271)
Q Consensus 214 Gi~~~~~ 220 (271)
|+++..|
T Consensus 260 GFe~F~F 266 (536)
T COG2024 260 GFEKFRF 266 (536)
T ss_pred Cccceee
Confidence 9997555
No 113
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=96.02 E-value=0.046 Score=57.18 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.....+.+.+.+++.+...||.|+.|-.|...+.... .+.. ....++..+ +.+.=+||+-+.+++.+.++.+.+..
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~~~--~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~ 561 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FGLN--PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRG 561 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cCCC--CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCC
Confidence 3444566678889999999999999998877654432 2221 134667776 67778999999999999999887655
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-----------cHH----HHHHHHHhCCCC
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-----------AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-----------~~~----ll~~~L~~lGi~ 216 (271)
..++|+|.+|+||.... +..+|..-+++=+-|.. +.. ++..+|..+|++
T Consensus 562 ~~~i~lFEiG~Vf~~~~---~~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~ 625 (791)
T PRK00629 562 NKDVALFEIGRVFLPDG---DLPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEALGLP 625 (791)
T ss_pred CCCEeEEeeeeeeCCCC---CCCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 68999999999996531 23456667777777732 222 778888888885
No 114
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=95.95 E-value=0.05 Score=56.23 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.....+.+.+.+++.+...||.|+.|-.|-..+.+ ..+..++.++ +.+.=+||+-+.+++...++.+.+..
T Consensus 396 ~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~--------~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~ 467 (704)
T CHL00192 396 RLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF--------SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQG 467 (704)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEecccccChhhc--------CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445677888899999999999999888665432 1235777776 67788999999999999999887666
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-------------cHH----HHHHHHHhCCCC
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-------------AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-------------~~~----ll~~~L~~lGi~ 216 (271)
..++|+|.+|+||-.+.. ..+|...+++-+.|.. +.. ++..+|..+|++
T Consensus 468 ~~~~rlFEiG~Vf~~~~~---~~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l~i~ 533 (704)
T CHL00192 468 NSTLEGFEIGHVFNLDSS---SIIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKLNLP 533 (704)
T ss_pred CCCEeEEEeeeeEcCCCc---cccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHCCCc
Confidence 689999999999954321 1356677777788842 111 778888999873
No 115
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=95.90 E-value=0.059 Score=52.73 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHc--------CCeeecC--CcccchHHhhhh-hccc----cccccEEEeeCCCCeEeeCCCCh
Q 024194 86 DMRLRNWLFHNFQEVSRLF--------GFEEVDF--PVLESEALFIRK-AGEE----IRDQLYCFEDRGNRRVALRPELT 150 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~--------Gy~eI~t--P~~E~~d~~~~~-~g~~----~~~~~y~f~D~~G~~laLRPD~T 150 (271)
...-...+.+.+.+.|.+. ||+.++. |+...+..|..- ...+ .....|-+. +..+||...+
T Consensus 40 ~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~----~~~lLRTHTS 115 (460)
T TIGR00469 40 EDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYIN----EQHLLRAHTS 115 (460)
T ss_pred CCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEec----CCceeCCCCc
Confidence 3445667777888888776 8988887 855555555431 0111 123456552 4589999999
Q ss_pred HHHHHHHHHcCCCCCCCeE--EEEEeceeecCCCCCCCCcceEEeEEEEEec
Q 024194 151 PSLARLVIQKGKSVSLPLK--WFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (271)
Q Consensus 151 ~~iAR~~a~~~~~~~~P~K--~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~ 200 (271)
+--+|.+.+... ...|.| +...|.|||++.....++-.|+|+..=.+..
T Consensus 116 a~q~~~~~~~~~-~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 116 AHELECFQGGLD-DSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRK 166 (460)
T ss_pred HHHHHHHHhccc-cCCCcceeeEeecceeeCCCCccccCccceeeEEEEEec
Confidence 999998875432 125777 9999999999988888999999998555554
No 116
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.02 Score=54.65 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-------CCCeEeeCCCChHHHHH
Q 024194 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-------GNRRVALRPELTPSLAR 155 (271)
Q Consensus 83 lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-------~G~~laLRPD~T~~iAR 155 (271)
....++.+..+....++.|..+||..|.||++...|-- | ..++|.+... -|+..-|---.-..+--
T Consensus 128 ~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCE----G---aGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~ 200 (446)
T KOG0554|consen 128 VGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCE----G---AGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA 200 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCC----C---CcceEEEEecCcccccccCCceEEEEeceehHHH
Confidence 34577899999999999999999999999999876532 2 2456665421 14444433222223322
Q ss_pred HHHHcCCCCCCCeEEEEEeceeecCCCCCC-CCcceEEeEEEEEecCcHH
Q 024194 156 LVIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 156 ~~a~~~~~~~~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEiiG~~~~~ 204 (271)
+. ... -|.|..|+.||.|+.+.. +.-|||.+.+|+--.++.+
T Consensus 201 ~a-~~L------srvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~ 243 (446)
T KOG0554|consen 201 MA-CAL------SRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLD 243 (446)
T ss_pred HH-hhh------cceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHH
Confidence 22 221 389999999999987755 4789999999987766543
No 117
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.09 E-value=0.025 Score=54.31 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=71.6
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCC
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPEL 149 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~ 149 (271)
+++.+|.- +- -.++..-|...+++.+...||.||+||-+-... ++-..++|++.=. +.--|+=.|.+
T Consensus 217 lDLRtptn-qA----iFriq~gvc~~FRe~L~~kgF~EIhTpKli~as-------SEGGanvF~v~Yfk~~A~LAQSPQL 284 (533)
T KOG0556|consen 217 LDLRTPTN-QA----IFRIQAGVCFAFREYLRSKGFVEIHTPKLIGAS-------SEGGANVFRVSYFKQKAYLAQSPQL 284 (533)
T ss_pred eecccccc-hh----eeehHHHHHHHHHHHHHhcCcceeccccccccc-------CCCCceeEEEEeccCcchhhcChHH
Confidence 55666642 11 235667788889999999999999999875322 1223567776433 33446666666
Q ss_pred hHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCC-CCcceEEeEEEEE
Q 024194 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDII 198 (271)
Q Consensus 150 T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEii 198 (271)
--++|-. .. --|+|.||+|||.|.+.-. +.-||.-+++|.-
T Consensus 285 yKQMaI~--gd------f~rVyeIGpVfRAEdSnthRhltEFvGLD~EMa 326 (533)
T KOG0556|consen 285 YKQMAIC--GD------FERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMA 326 (533)
T ss_pred HHHHHHh--cc------hhheeeecceeeccccchhhhhHHhhCcchhhH
Confidence 6555432 11 2489999999999976543 4789988888763
No 118
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.49 E-value=0.095 Score=50.74 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=99.1
Q ss_pred cccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCC----
Q 024194 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGN---- 140 (271)
Q Consensus 67 ~~~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G---- 140 (271)
..+|+++.-.+|+.-+-|-...+++.|...+...+++.|-+....|+|-+...+...-.+ ...-++-.+ .+.|
T Consensus 78 k~emieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwV-Tr~G~seL 156 (551)
T KOG4163|consen 78 KGEMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWV-TRAGNSEL 156 (551)
T ss_pred hhhhheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEE-EecCCccc
Confidence 347899999999999999999999999999999999999999999999998887642111 112334333 3433
Q ss_pred -CeEeeCCC----ChHHHHHHHHHcCCCCCCCeEEEEEeceeecC--CCC-CCCCcceE-EeEEEEEec
Q 024194 141 -RRVALRPE----LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE--RMT-RGRRREHY-QWNMDIIGV 200 (271)
Q Consensus 141 -~~laLRPD----~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e--~~~-~Gr~REf~-Q~gvEiiG~ 200 (271)
+.+++||. |-+..++.+-++ +++|+|+=+.-+|-|.| .|+ .-|.|||. |-|=-.|-.
T Consensus 157 eepiaiRPTSETvmyp~yakWi~Sh---RDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat 222 (551)
T KOG4163|consen 157 EEPIAIRPTSETVMYPYYAKWIQSH---RDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT 222 (551)
T ss_pred ccceeeccCccceecHHHHHHHHhh---ccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCC
Confidence 46899996 456677776553 57999999999999998 233 33789984 877666644
No 119
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=94.37 E-value=0.063 Score=53.23 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCC-CCCCCcceEEeEEEEEecC-cHH----HHHHHHH
Q 024194 138 RGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVP-AVT----VLQEVLR 211 (271)
Q Consensus 138 ~~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~-~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~ 211 (271)
+.+..-+||+.+|+++...++.+.+....|+|+|.+|+|||.+.. ...+...+.+.....-+.+ +.. ++..+|.
T Consensus 179 p~~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~ 258 (529)
T PRK06253 179 PESSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLS 258 (529)
T ss_pred CccccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHH
Confidence 346778999999999999998877667889999999999987531 1112223333211100111 222 7889999
Q ss_pred hCCCC
Q 024194 212 CHSIP 216 (271)
Q Consensus 212 ~lGi~ 216 (271)
.+|++
T Consensus 259 ~LGI~ 263 (529)
T PRK06253 259 QFGFT 263 (529)
T ss_pred HcCCC
Confidence 99986
No 120
>PRK07080 hypothetical protein; Validated
Probab=92.98 E-value=1.2 Score=41.79 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=93.4
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcC----CeeecCCcccchHHhhhhhcc--ccccccEEEee---------
Q 024194 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG----FEEVDFPVLESEALFIRKAGE--EIRDQLYCFED--------- 137 (271)
Q Consensus 73 ~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~G----y~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D--------- 137 (271)
+-+|.|+.-++... ...+.+.+.+.+++.++| ++++.-|.+.+.+.|.+. +- ...+.++.+.-
T Consensus 30 ~~~~~g~~g~ygrs-~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~-~Y~ksFP~l~~~V~~~~g~~~e~~ 107 (317)
T PRK07080 30 LLIPTGVDGLYGRS-GLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERS-GYLKSFPQLAGTVHSFCGNEAEHR 107 (317)
T ss_pred ceeccCCCcccccc-HHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhc-ChhhhCcccceeecCCCCCCHHHH
Confidence 55677777776643 446666777777777777 999999998888887652 21 11222222211
Q ss_pred ---------------CCCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCC-CCCCcceEEeEEEEEecC
Q 024194 138 ---------------RGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVP 201 (271)
Q Consensus 138 ---------------~~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~-~Gr~REf~Q~gvEiiG~~ 201 (271)
.....++|.|-.+.|+-=.++....-...-..+=-.|.|||+|... ..|..||.+-.+=.+|.+
T Consensus 108 ~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~ 187 (317)
T PRK07080 108 RLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTP 187 (317)
T ss_pred HHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCH
Confidence 1234688999888888666654321111225566779999999643 237899999999999976
Q ss_pred cHH---------HHHHHHHhCCCCc
Q 024194 202 AVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 202 ~~~---------ll~~~L~~lGi~~ 217 (271)
... ....+++.+|++-
T Consensus 188 e~v~~~r~~w~e~~~~l~~~LgL~~ 212 (317)
T PRK07080 188 EQIVAFRQSWIERGTAMADALGLPV 212 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCce
Confidence 632 3456778888874
No 121
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=91.65 E-value=0.38 Score=49.38 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
....+...+.+++.+...||+|+.|-.|-..+......+. ..+..++..+ +-+.=+||+-+-+++...++.+.. .+
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~--~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~-r~ 426 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLE--NDEALELANPISEEYSVLRTSLLPGLLEALSYNKN-RK 426 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccC--CCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhc-cC
Confidence 3456677788999999999999999999888766543221 1225666665 566778999999999999887654 56
Q ss_pred CC-eEEEEEeceeecCCCCC-----------C-CCcceEEeEEEEEecCcHH-HHHHHHHhCCCC
Q 024194 166 LP-LKWFAVGQCWRYERMTR-----------G-RRREHYQWNMDIIGVPAVT-VLQEVLRCHSIP 216 (271)
Q Consensus 166 ~P-~K~yyig~VfR~e~~~~-----------G-r~REf~Q~gvEiiG~~~~~-ll~~~L~~lGi~ 216 (271)
.| +|+|.+|.||-.+.... | ...+.||-+ .-++..+.. ++..+|+.+|++
T Consensus 427 ~~~~~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~~~~w~~~-~~v~f~d~Kg~ve~ll~~lg~~ 490 (650)
T COG0072 427 NPDVRIFEIGDVFVKDEEAERETRHLAGLAAGLAGEESWQGK-RPVDFYDAKGDLEALLEALGVE 490 (650)
T ss_pred CCCeeEEEeeeeEecCCcccchhHHHHHHhhccccccccccC-CCcCHHHHHHHHHHHHHHhCCc
Confidence 78 99999999999863211 1 113333333 001111111 788999999954
No 122
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=84.53 E-value=5.8 Score=39.42 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=54.4
Q ss_pred CCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEece-eecCCCCCCCCcceEEeEEEEEecCcHH----HHHHHHHhC
Q 024194 139 GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQC-WRYERMTRGRRREHYQWNMDIIGVPAVT----VLQEVLRCH 213 (271)
Q Consensus 139 ~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~V-fR~e~~~~Gr~REf~Q~gvEiiG~~~~~----ll~~~L~~l 213 (271)
.-+--+.|..+-+.+.+.++.+. +.++|+|+|.++.| |.++....|-..|-.=+-+..=-.++.+ ++..+|+..
T Consensus 439 t~efqv~RtsLlPGllKTv~~N~-~~~lP~klFEisDvv~~D~~~e~ga~N~R~l~A~y~g~~~gfE~i~Glld~~l~~~ 517 (578)
T KOG2472|consen 439 TLEFQVVRTSLLPGLLKTVASNR-KMPLPIKLFEISDVVFKDSSTEVGARNERHLAAVYCGKTSGFEIIHGLLDQLLNVP 517 (578)
T ss_pred ceeeeeehhhhchHHHHHHHhcc-CCCCceeEEEeeeEEEecccccccccchheeeeeecCCCccHHHHHHHHHHHhcCC
Confidence 34566888899999999999875 46899999999986 4555556676667666665554445566 455555555
Q ss_pred CCCc
Q 024194 214 SIPE 217 (271)
Q Consensus 214 Gi~~ 217 (271)
++.+
T Consensus 518 ~~~~ 521 (578)
T KOG2472|consen 518 PIRD 521 (578)
T ss_pred cccc
Confidence 6554
No 123
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=80.81 E-value=4.7 Score=37.34 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=46.9
Q ss_pred CcHHHHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 024194 201 PAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 201 ~~~~ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~ 263 (271)
.+..++..+++.||+++.....++..+++ .+...+.+++...+++++.++.|..++..++
T Consensus 150 ~~~~il~~il~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g 209 (314)
T TIGR00443 150 GHVGLVRALLEEAGLPEEAREALREALAR---KDLVALEELLAELGLDPEVRERLLALPRLRG 209 (314)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHh---cCHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 45558899999999999777777777665 4555677778888999999999998887553
No 124
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.10 E-value=3.8 Score=39.72 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~ 166 (271)
.+.+..+.+.+++.|...||.||.+|++.-..+- + | .-+|++ |--|+.-. +|.+---++-+-. +-
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVE--G-G----sTLFkl-dYyGEeAy----LTQSSQLYLEtcl---pA 307 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQVE--G-G----STLFKL-DYYGEEAY----LTQSSQLYLETCL---PA 307 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEec--C-c----ceEEee-cccCchhh----ccchhHHHHHHhh---hh
Confidence 3667888899999999999999999988644331 1 2 336665 33344332 3444433443322 22
Q ss_pred CeEEEEEeceeecCCCC-CCCCcceEEeEEEEEec
Q 024194 167 PLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGV 200 (271)
Q Consensus 167 P~K~yyig~VfR~e~~~-~Gr~REf~Q~gvEiiG~ 200 (271)
--..|.|.+-||.|++. +-+..|++-+.+|+--.
T Consensus 308 lgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afl 342 (545)
T KOG0555|consen 308 LGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFL 342 (545)
T ss_pred cCceeEecHhhhhhhhhhhhhhhhheeeeeecccc
Confidence 35899999999999764 33578999999987544
No 125
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=72.30 E-value=5.6 Score=38.13 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 024194 201 PAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 201 ~~~~ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~ 263 (271)
.+..++..+|+.||+++.....++..+++. +...+.+++. +++++..+.|.+++..++
T Consensus 161 ~~~~i~~~il~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~--~l~~~~~~~l~~l~~~~g 218 (391)
T PRK12292 161 GHVGLFRALLEAAGLSEELEEVLRRALANK---DYVALEELVL--DLSEELRDALLALPRLRG 218 (391)
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CHHHHHHHHh--cCCHHHHHHHHHHHHhcC
Confidence 344588999999999987777777776654 4455555554 788888888888887654
No 126
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=69.42 E-value=14 Score=35.58 Aligned_cols=61 Identities=5% Similarity=0.115 Sum_probs=47.6
Q ss_pred cCcHHHHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 024194 200 VPAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 200 ~~~~~ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~ 263 (271)
..+..++..+++.+|+++.....+... +++.+...+.++++.++++++.++.|..++...+
T Consensus 163 ig~~~i~~~il~~l~l~~~~~~~l~~~---l~kk~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g 223 (392)
T PRK12421 163 LGHVGIFRRLAELAGLSPEEEEELFDL---LQRKALPELAEVCQNLGVGSDLRRMFYALARLNG 223 (392)
T ss_pred eCCHHHHHHHHHHcCCCHHHHHHHHHH---HHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 345558889999999998766555554 5567888888888889999998888888887653
No 127
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=65.64 E-value=9 Score=35.04 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 024194 202 AVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLS 260 (271)
Q Consensus 202 ~~~ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~ 260 (271)
+..++..+++.||+++.....++..+++ .++..+++++.+.+++.+..+.|..++.
T Consensus 153 h~~i~~~il~~~gl~~~~~~~l~~~l~~---~~~~~~~~~~~~~~l~~~~~~~l~~l~~ 208 (311)
T PF13393_consen 153 HTGILDAILEHLGLPEDLRRELLEALDK---KDLSELKELLSELGLSSESLEILDKLPE 208 (311)
T ss_dssp EHHHHHHHHHHTTHHHHHHHHHHHHHHH---THHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred CchhhHHHHhhcCCChhhhhhhhhheec---cccccchhhhcccccchhhhhhhhcccc
Confidence 4448889999999998776666666544 5677888999999999999998888774
No 128
>PLN02530 histidine-tRNA ligase
Probab=61.38 E-value=12 Score=37.10 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=29.0
Q ss_pred hhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhc---CCHhHHh
Q 024194 230 IEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI---KSLTELE 268 (271)
Q Consensus 230 l~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~---K~~~~l~ 268 (271)
++.+|...++.+|+.++++++..+.++.+++. ++.++++
T Consensus 226 i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~ 267 (487)
T PLN02530 226 IKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIE 267 (487)
T ss_pred EEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHH
Confidence 46789999999999999999887776555543 3445543
No 129
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=59.64 E-value=29 Score=33.22 Aligned_cols=33 Identities=6% Similarity=0.120 Sum_probs=24.2
Q ss_pred cCcHHHHHHHHHhCCCCccchhhHHHHHHhhhc
Q 024194 200 VPAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEK 232 (271)
Q Consensus 200 ~~~~~ll~~~L~~lGi~~~~~~~v~~~ldkl~~ 232 (271)
..+..++..+++.+|+++.....++..+|+.++
T Consensus 142 ig~~~il~~ll~~l~l~~~~~~~l~~~i~kk~~ 174 (373)
T PRK12295 142 LGDVGLFAALVDALGLPPGWKRRLLRHFGRPRS 174 (373)
T ss_pred eCCHHHHHHHHHHcCCCHHHHHHHHHHHhccch
Confidence 345558889999999998776677777766543
No 130
>PLN02972 Histidyl-tRNA synthetase
Probab=56.63 E-value=19 Score=37.82 Aligned_cols=38 Identities=5% Similarity=0.104 Sum_probs=31.1
Q ss_pred hhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHH
Q 024194 230 IEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 230 l~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l 267 (271)
++.+|...++.+|+.+|++++..+.++.+++.++...+
T Consensus 478 I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~l 515 (763)
T PLN02972 478 VKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSF 515 (763)
T ss_pred EEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhH
Confidence 46789999999999999999998888888876654433
No 131
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=55.99 E-value=32 Score=31.59 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=34.1
Q ss_pred CCCeEEEEEeceeecCCCCCC----CCcceEEeEEEEEecCc--HHHHHHHHHhCCCCcc
Q 024194 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPA--VTVLQEVLRCHSIPEH 218 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~G----r~REf~Q~gvEiiG~~~--~~ll~~~L~~lGi~~~ 218 (271)
+.|.+.+|+.++.|......| |...++|.-|-+==.+. .++..++|+.+||...
T Consensus 43 pepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQVilKPsP~niq~lYL~SL~~lGId~~ 102 (284)
T PF02091_consen 43 PEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQVILKPSPDNIQELYLESLEALGIDPK 102 (284)
T ss_dssp SS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEEEEEES--TTHHHHHHHHHHHCT--CC
T ss_pred CCCccccccccCCCCCCCccCCCchHhhhhheeEEEEcCCCccHHHHHHHHHHHhCCCcc
Confidence 579999999999998754444 56788898876543332 2388899999999753
No 132
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=54.94 E-value=47 Score=26.63 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024194 205 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVL 259 (271)
Q Consensus 205 ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l 259 (271)
-+..++...|+++. ++.+..+- .-...+.+.+++++++++++++.+++|+++-
T Consensus 58 pIQTvmRr~g~~~p-YE~LK~lT-Rg~~it~~~l~~fI~~L~ip~~~k~~L~~lt 110 (115)
T PF08328_consen 58 PIQTVMRRYGIPNP-YEKLKELT-RGKKITKEDLREFIESLDIPEEAKARLLALT 110 (115)
T ss_dssp HHHHHHHHTT-SSH-HHHHHHHH-TTS---HHHHHHHHHTSSS-HHHHHHHHH--
T ss_pred HHHHHHHHcCCCCH-HHHHHHHH-cCCCCCHHHHHHHHHhCCCCHHHHHHHHhcC
Confidence 45678899999884 22222211 1235678889999999999999999998763
No 133
>cd04750 Commd2 COMM_Domain containing protein 2. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=48.54 E-value=40 Score=28.51 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHhCCCCccchhhHHHHHHh------hhcCCHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 024194 201 PAVTVLQEVLRCHSIPEHLFGKVCIIIDK------IEKLPLDVIKNDLKSAGMSEAAIEELLRVLS 260 (271)
Q Consensus 201 ~~~~ll~~~L~~lGi~~~~~~~v~~~ldk------l~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~ 260 (271)
++..++..+.+.+|++.+..+.+...+-. -...+.+.+...|..+|++++.++.|.++..
T Consensus 14 ~n~~~~~~~A~~l~i~~~~vk~~v~aL~~ll~~a~K~~l~~~~~~~~L~~l~~~~e~~~~l~~~y~ 79 (166)
T cd04750 14 INQKKYEGAARKLEVEVETVQHGVEALVYLLIESTKLKLSERDFQDSIEFLGFSDDLNEILLQLYE 79 (166)
T ss_pred CChHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34447788889999987655422211111 1345677888889999999999999998554
No 134
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=43.49 E-value=26 Score=33.81 Aligned_cols=39 Identities=8% Similarity=0.176 Sum_probs=30.1
Q ss_pred hhcCCHHHHHHHHHhCCCCHHHHHHHHH---HHhcCCHhHHh
Q 024194 230 IEKLPLDVIKNDLKSAGMSEAAIEELLR---VLSIKSLTELE 268 (271)
Q Consensus 230 l~~~~~~~i~~~L~~lgLs~~~~~~L~~---~l~~K~~~~l~ 268 (271)
++.+|...+..+|+.+|++++..+.+.. .++.++.+++.
T Consensus 158 i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~ 199 (423)
T PRK12420 158 IQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVR 199 (423)
T ss_pred EEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHH
Confidence 4678999999999999999988777754 44556666554
No 135
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=39.82 E-value=45 Score=30.50 Aligned_cols=53 Identities=23% Similarity=0.191 Sum_probs=39.4
Q ss_pred CCCeEEEEEeceeecCCCCCC----CCcceEEeEEEEEecCc--HHHHHHHHHhCCCCc
Q 024194 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPA--VTVLQEVLRCHSIPE 217 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~G----r~REf~Q~gvEiiG~~~--~~ll~~~L~~lGi~~ 217 (271)
+.|.+..|+.++.|......| |...++|.-|-+==++. .++..++|+.+||+.
T Consensus 44 pepw~vAYVqPsrRP~DGRYGeNPNRLq~y~QfQViiKPsP~niQelYL~SL~~lGid~ 102 (279)
T cd00733 44 PEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLESLEALGINP 102 (279)
T ss_pred CCcceeccccCCCCCCCCCcCCCchhhhhheeeEEEECCCCccHHHHHHHHHHHhCCCc
Confidence 479999999999998754444 56678898865543332 228889999999985
No 136
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=38.73 E-value=48 Score=30.52 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=39.7
Q ss_pred CCCeEEEEEeceeecCCCCCC----CCcceEEeEEEEEecCc--HHHHHHHHHhCCCCc
Q 024194 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPA--VTVLQEVLRCHSIPE 217 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~G----r~REf~Q~gvEiiG~~~--~~ll~~~L~~lGi~~ 217 (271)
+.|.+..|+.++.|......| |...++|.-|-+==+++ .++..++|+.+||..
T Consensus 45 pepw~vAYVqPsRRP~DGRYGeNPNRLq~yyQfQVilKPsP~niQelYL~SL~~lGid~ 103 (293)
T TIGR00388 45 PEPWAVAYVEPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDSLRALGIDP 103 (293)
T ss_pred CCcceeccccCCCCCCCCCCCCCchhhhheeeeEEEECCCCccHHHHHHHHHHHhCCCc
Confidence 479999999999998754444 56778898875543332 228889999999985
No 137
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=38.36 E-value=47 Score=30.41 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=40.2
Q ss_pred CCCeEEEEEeceeecCCCCCC----CCcceEEeEEEEEecCc--HHHHHHHHHhCCCCcc
Q 024194 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPA--VTVLQEVLRCHSIPEH 218 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~G----r~REf~Q~gvEiiG~~~--~~ll~~~L~~lGi~~~ 218 (271)
+.|.+..|+.++.|......| |...++|.-|-+==+++ .++..++|+.+||...
T Consensus 48 pepw~vaYvqPsRRP~DGRYGeNPNRLq~y~QfQVilKPsP~niQelYL~SL~~lGid~~ 107 (283)
T PRK09348 48 PEPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQVILKPSPDNIQELYLGSLEALGIDPL 107 (283)
T ss_pred CCccccccccCCCCCCCCCcCCCchhhhhheeeEEEEcCCCccHHHHHHHHHHHhCCCcc
Confidence 479999999999998755444 56678898875543332 2288899999999864
No 138
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=37.95 E-value=71 Score=25.42 Aligned_cols=35 Identities=31% Similarity=0.357 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHhCC--CCHHHHHHHHHHHhcCCHhHH
Q 024194 233 LPLDVIKNDLKSAG--MSEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 233 ~~~~~i~~~L~~lg--Ls~~~~~~L~~~l~~K~~~~l 267 (271)
-+...++++|+..| ++.+.++.++..++.||+++|
T Consensus 18 psa~DikkIl~sVG~E~d~e~i~~visel~GK~i~El 54 (112)
T KOG3449|consen 18 PSASDIKKILESVGAEIDDERINLVLSELKGKDIEEL 54 (112)
T ss_pred CCHHHHHHHHHHhCcccCHHHHHHHHHHhcCCCHHHH
Confidence 35678888888766 468889999999999998876
No 139
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=37.71 E-value=89 Score=25.55 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=27.9
Q ss_pred HhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 024194 228 DKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLS 260 (271)
Q Consensus 228 dkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~ 260 (271)
+.+-..+-.+++.+|.+.|..+|...+|..++.
T Consensus 94 e~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~ 126 (129)
T PF13543_consen 94 EALLEMSDEELKEILNRCGAREEECRRLCRALS 126 (129)
T ss_pred HHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444557889999999999999999999988875
No 140
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=34.90 E-value=1e+02 Score=26.05 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=37.9
Q ss_pred HHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHH
Q 024194 206 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 258 (271)
Q Consensus 206 l~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~ 258 (271)
..+++..+|+.+.... .--..+++..++.-.+.|..+|+|++.+..|+.+
T Consensus 121 w~~l~~~~g~~~~~m~---~wh~~fe~~~p~~h~~~l~~~g~~~~~~~~ir~~ 170 (172)
T cd04790 121 WVAILKAAGMDEADMR---RWHIEFEKMEPEAHQEFLQSLGIPEDEIERIRAW 170 (172)
T ss_pred HHHHHHHcCCChHHHH---HHHHHHHHhCcHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4477888898875422 2223367788999999999999999999988754
No 141
>COG4388 Mu-like prophage I protein [General function prediction only]
Probab=34.79 E-value=99 Score=29.01 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=59.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHH---hhhhhccc----cccccEEEeeCCCCeEeeCCC
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL---FIRKAGEE----IRDQLYCFEDRGNRRVALRPE 148 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~---~~~~~g~~----~~~~~y~f~D~~G~~laLRPD 148 (271)
|.++..|+-.+....+-|. .+ .-...+++-.|+. +..+.|.. .--..|.|.|. +-+..+|.
T Consensus 40 ptdv~~W~i~~~~~q~ii~-~a---------~alnq~lvVDYeHqTL~k~k~g~~a~~a~~~~~~~f~de--rGl~~e~k 107 (357)
T COG4388 40 PTDVPHWTISADLAQQIIA-AA---------DALNQDLVVDYEHQTLKKAKTGQQAPAAGWISKYVFDDE--RGLMGEVK 107 (357)
T ss_pred CCCCcceeecHhHHHHHHH-HH---------HHhcCCeeeeccHHHHHhccCCCCCCccceeeeeEeccc--cCceeecc
Confidence 6666666654443332222 21 1345676666653 33333322 12236888776 56888999
Q ss_pred ChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeE
Q 024194 149 LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWN 194 (271)
Q Consensus 149 ~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~g 194 (271)
+|+.-.-++... -|-|+++||-|+.. |..+|...+-
T Consensus 108 WtpkA~~~i~~~--------Ey~ylSpVf~YDt~--G~~~elrmaA 143 (357)
T COG4388 108 WTPKAKDMIDSG--------EYRYLSPVFEYDTL--GNVRELRMAA 143 (357)
T ss_pred cChHHHHHHhcC--------CccccccccccCCC--CCchhhhhhh
Confidence 999988877542 35689999999864 7788877654
No 142
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=31.10 E-value=28 Score=24.30 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=35.1
Q ss_pred HHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhH
Q 024194 210 LRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTE 266 (271)
Q Consensus 210 L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~ 266 (271)
|+.+|+++.... +...+- ..+..-+.++-+.+|++...+...++-+..+++..
T Consensus 1 L~~~gLs~~E~~-vy~~Ll---~~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~ 53 (68)
T PF01978_consen 1 LEVLGLSENEAK-VYLALL---KNGPATAEEIAEELGISRSTVYRALKSLEEKGLVE 53 (68)
T ss_dssp HHHHCHHHHHHH-HHHHHH---HHCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE
T ss_pred CCcCCcCHHHHH-HHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 445677665444 333221 23445556667788999999999999998888654
No 143
>PLN03152 hypothetical protein; Provisional
Probab=30.84 E-value=53 Score=29.43 Aligned_cols=41 Identities=37% Similarity=0.336 Sum_probs=21.2
Q ss_pred cCCCCCCCCcccCcccccccchhhhhcccccccCCCCCCcccCCCCC
Q 024194 17 LSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSP 63 (271)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (271)
++.|..+.|+|. ++--.+|+.+.+.++-..++-.-..++.+
T Consensus 26 ~~~~~~~~r~~~------~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (241)
T PLN03152 26 LSRCGASRRDFI------LHTASLCASSLAAQNPLPPSLADPSKPSK 66 (241)
T ss_pred ccccccccccee------eehhHHHHhhhhcCCCCCccccCCCCCCC
Confidence 334444544444 45566777666665555555444444443
No 144
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=30.74 E-value=1.5e+02 Score=23.62 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhCCC--CHHHHHHHHHHHhcCCHhHH
Q 024194 233 LPLDVIKNDLKSAGM--SEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 233 ~~~~~i~~~L~~lgL--s~~~~~~L~~~l~~K~~~~l 267 (271)
...+.|+++|+..|+ +++..+.+.+.|..||+.+|
T Consensus 20 pTaddI~kIL~AaGveVd~~~~~l~~~~L~GKdI~EL 56 (112)
T PTZ00373 20 PTKKEVKNVLSAVNADVEDDVLDNFFKSLEGKTPHEL 56 (112)
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHH
Confidence 457888999987665 56678999999999998876
No 145
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.11 E-value=1.9e+02 Score=21.35 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=26.3
Q ss_pred HHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHH
Q 024194 206 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEE 254 (271)
Q Consensus 206 l~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~ 254 (271)
+-..+..+|++.++.+.+...+ -.+...+++..+++||+=..++.
T Consensus 32 AMa~i~qLGip~eKLQ~lm~~V----MqnP~LikeAv~ELgLDFsKve~ 76 (82)
T PF11212_consen 32 AMATIQQLGIPQEKLQQLMAQV----MQNPALIKEAVEELGLDFSKVEA 76 (82)
T ss_pred HHHHHHHcCCCHHHHHHHHHHH----hcChHHHHHHHHHhCCcHHHHHH
Confidence 3455666777766655433332 24566777777777776555444
No 146
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.40 E-value=2.4e+02 Score=20.88 Aligned_cols=53 Identities=8% Similarity=0.231 Sum_probs=34.8
Q ss_pred HHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 024194 206 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 262 (271)
Q Consensus 206 l~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K 262 (271)
+..+|+..+|.++++..+...+- .+.-..-..+..+|++++..+.|...+-..
T Consensus 4 Iia~LKehnvsd~qi~elFq~lT----~NPl~AMa~i~qLGip~eKLQ~lm~~VMqn 56 (82)
T PF11212_consen 4 IIAILKEHNVSDEQINELFQALT----QNPLAAMATIQQLGIPQEKLQQLMAQVMQN 56 (82)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHh----hCHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 35678888888877554444321 222233345678999999999988877654
No 147
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=28.50 E-value=62 Score=22.82 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred hhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHh
Q 024194 230 IEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLT 265 (271)
Q Consensus 230 l~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~ 265 (271)
+...+.--+..+...++++++.++.+++.+..|+..
T Consensus 9 l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I 44 (69)
T PF09012_consen 9 LRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYI 44 (69)
T ss_dssp HHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSC
T ss_pred HHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 344566667777889999999999999999998853
No 148
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=27.13 E-value=1.8e+02 Score=23.11 Aligned_cols=36 Identities=33% Similarity=0.339 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHhCCC--CHHHHHHHHHHHhcCCHhHHh
Q 024194 233 LPLDVIKNDLKSAGM--SEAAIEELLRVLSIKSLTELE 268 (271)
Q Consensus 233 ~~~~~i~~~L~~lgL--s~~~~~~L~~~l~~K~~~~l~ 268 (271)
...+.|+++|+..|+ +++....+.+.|+.||+.+|-
T Consensus 18 pta~dI~~IL~AaGvevd~~~~~~f~~~L~gK~i~eLI 55 (113)
T PLN00138 18 PSAEDLKDILGSVGADADDDRIELLLSEVKGKDITELI 55 (113)
T ss_pred CCHHHHHHHHHHcCCcccHHHHHHHHHHHcCCCHHHHH
Confidence 567888999987765 567788899999999988764
No 149
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=26.56 E-value=97 Score=24.07 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=34.6
Q ss_pred HHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCC--CCHHHHHHHHHHHh
Q 024194 206 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAG--MSEAAIEELLRVLS 260 (271)
Q Consensus 206 l~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lg--Ls~~~~~~L~~~l~ 260 (271)
+.+.|..+|+++.. ++.+++ +...+.++++.++.+++ ++++..+.|++++.
T Consensus 62 l~~~L~~~~L~~~E---~~qi~N-l~P~~~~El~~ii~~~~~r~~ee~l~~iL~~v~ 114 (117)
T PF03874_consen 62 LREELKKFGLTEFE---ILQIIN-LRPTTAVELRAIIESLESRFSEEDLEEILDLVS 114 (117)
T ss_dssp HHHHHTTSTS-HHH---HHHHHH-H--SSHHHHHHHSTTGTTTSTHHHHHHHHHHHH
T ss_pred HHHHHhcccCCHHH---HHHHhc-CCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 44566677776632 334333 66788999999998765 89999999998875
No 150
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=25.67 E-value=1.2e+02 Score=22.52 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHh
Q 024194 235 LDVIKNDLKSAGMSEAAIEELLRVLS 260 (271)
Q Consensus 235 ~~~i~~~L~~lgLs~~~~~~L~~~l~ 260 (271)
.++++..|...|+|++.++.|..+..
T Consensus 8 ~ee~kaEL~aAGmS~~aidgi~~i~~ 33 (82)
T PF14747_consen 8 EEEAKAELVAAGMSEKAIDGIVKIAE 33 (82)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57888888899999999999888764
No 151
>PF05379 Peptidase_C23: Carlavirus endopeptidase ; InterPro: IPR008041 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C23 (clan CA). The type example is Carlavirus (apple stem pitting virus) endopeptidase, this thought to play a role in the post-translational cleavage of the high molecular weight primary translation products of the virus.; GO: 0003968 RNA-directed RNA polymerase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=24.91 E-value=1.6e+02 Score=22.28 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 024194 205 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 205 ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~ 263 (271)
++.++-+.+|=...+ |..++. ++.+.+.++.+....|++-+..+.+.++++.+.
T Consensus 6 vi~AiA~aL~R~~~d---Vl~Vl~--~~~~~~~~~~l~~G~Gl~l~~le~~f~~F~I~A 59 (89)
T PF05379_consen 6 VIRAIAEALGRREQD---VLAVLS--RKCGEELLEELWSGEGLDLEDLEELFELFDICA 59 (89)
T ss_pred hhHHHHHHhCCCHHH---HHHHHH--hccCHHHHHHHHcCCCcCHHHHHHHHHHcCeEE
Confidence 345666777766532 444442 457788899999999999999999999988764
No 152
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=24.67 E-value=2.3e+02 Score=22.41 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHhCCC--CHHHHHHHHHHHhcCCHhHH
Q 024194 232 KLPLDVIKNDLKSAGM--SEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 232 ~~~~~~i~~~L~~lgL--s~~~~~~L~~~l~~K~~~~l 267 (271)
....+.|+++|+..|+ ++.....+.+.|..||+.+|
T Consensus 17 ~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~GKdi~eL 54 (109)
T cd05833 17 SPSAADVKKILGSVGVEVDDEKLNKVISELEGKDVEEL 54 (109)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHH
Confidence 3567788888887665 56668888888888888776
No 153
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=23.46 E-value=2.3e+02 Score=22.19 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHhCC--CCHHHHHHHHHHHhcCCHhHH
Q 024194 233 LPLDVIKNDLKSAG--MSEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 233 ~~~~~i~~~L~~lg--Ls~~~~~~L~~~l~~K~~~~l 267 (271)
...+.|+++|...| ++++....+.+.+..|++.++
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaGk~V~el 53 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNGKNIDEV 53 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcCCCHHHH
Confidence 46788888888765 467788889999998988765
No 154
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=22.34 E-value=2.4e+02 Score=21.87 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=38.5
Q ss_pred HHHHHHhCCCCccchhhHHHHHHh--------hhcCCHHHHHHHHHhCC-------CCHHHHHHHHHHHhc
Q 024194 206 LQEVLRCHSIPEHLFGKVCIIIDK--------IEKLPLDVIKNDLKSAG-------MSEAAIEELLRVLSI 261 (271)
Q Consensus 206 l~~~L~~lGi~~~~~~~v~~~ldk--------l~~~~~~~i~~~L~~lg-------Ls~~~~~~L~~~l~~ 261 (271)
+...+...||++..++++...+.. .+....+.+...|...| +++++.++|.+.+..
T Consensus 31 l~G~l~d~gI~d~~~~ev~~~L~~GssAl~~lv~~~~~d~v~~~l~~~gg~v~~t~ls~~~e~~L~~al~~ 101 (102)
T PF06897_consen 31 LAGALSDYGIDDEFIKEVGEALKPGSSALFLLVDEATEDKVDAALRKFGGKVLRTSLSEEDEDELQEALDE 101 (102)
T ss_pred HHhHHhhCCCCHHHHHHHHhhcCCCceEEEEEeccCCHHHHHHHHHhcCCEEEeccCCHHHHHHHHHHHhc
Confidence 344577788887544433332211 25667889999998777 899999999988753
No 155
>PF02556 SecB: Preprotein translocase subunit SecB; InterPro: IPR003708 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Recently, the tertiary structure of Haemophilus influenzae SecB (P44853 from SWISSPROT) was resolved by means of X-ray crystallography to 2.5A []. The chaperone comprises four chains, forming a tetramer, each chain of which has a simple alpha+beta fold arrangement. While one binding site on the homotetramer recognises unfolded polypeptides by hydrophobic interactions, the second binds to SecA through the latter's C-terminal 22 residues.; GO: 0051082 unfolded protein binding, 0015031 protein transport, 0051262 protein tetramerization; PDB: 1OZB_F 1FX3_A 1QYN_A.
Probab=22.17 E-value=1.3e+02 Score=24.53 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhh
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRK 123 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~ 123 (271)
+.++-++++.+..+-.+.||-.+..|++...++|...
T Consensus 107 ~iL~Py~R~~Is~lt~~~gfppl~LP~INf~~l~~~~ 143 (149)
T PF02556_consen 107 AILFPYLREIISSLTARAGFPPLILPPINFSELYEQQ 143 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTT-S--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeecCccCHHHHHHHH
Confidence 3667889999999999999999999999999998754
No 156
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=21.75 E-value=99 Score=33.67 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCe
Q 024194 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (271)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~P~ 168 (271)
..+.+...+.+....+||..+.+=-.|- +.|. | .-..+.|.+ .+.|.
T Consensus 6 ~~q~~i~~l~~~w~~~gc~~~qp~~~e~------gagt------~---------------~p~t~~~~l------~~~~~ 52 (1000)
T PRK14908 6 TMQDMLLALLRYWSEQGCIIHQGYDLEV------GAGT------F---------------NPATFLRVL------GPEPW 52 (1000)
T ss_pred cHHHHHHHHHHHHHHCCCEEECCccccc------ccCc------C---------------CHHHHHhhc------CCCCC
Confidence 3456666777777788887655433331 1121 1 112344433 24799
Q ss_pred EEEEEeceeecCCCCCC----CCcceEEeEEEEEecCc--HHHHHHHHHhCCCCc
Q 024194 169 KWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPA--VTVLQEVLRCHSIPE 217 (271)
Q Consensus 169 K~yyig~VfR~e~~~~G----r~REf~Q~gvEiiG~~~--~~ll~~~L~~lGi~~ 217 (271)
+.+|++++.|......| |...++|.-|-+==.+. .++...+|+.+||..
T Consensus 53 ~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~q~~yl~sl~~~gi~~ 107 (1000)
T PRK14908 53 RVAYVEPSRRPDDGRYGQNPNRLQTYTQFQVILKPVPGNPQELYLESLKAIGIDL 107 (1000)
T ss_pred cccccCCCCCCCCCCcCCCchhhhhheeeEEEECCCCccHHHHHHHHHHHcCCCc
Confidence 99999999998755544 56788998876543332 238889999999964
No 157
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=21.08 E-value=1.5e+02 Score=24.07 Aligned_cols=38 Identities=16% Similarity=0.040 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHhHHhcc
Q 024194 233 LPLDVIKNDLKSA-GMSEAAIEELLRVLSIKSLTELEGW 270 (271)
Q Consensus 233 ~~~~~i~~~L~~l-gLs~~~~~~L~~~l~~K~~~~l~~~ 270 (271)
|+.+.+..++..+ ..+++.++.+-++++..|+..++.+
T Consensus 44 GG~e~f~~i~~~~~~~~~~~~ea~~~Ai~~~dla~vk~~ 82 (123)
T PF05396_consen 44 GGEEGFAAIMSHAEANSPAAAEAFNEAIESGDLATVKAA 82 (123)
T ss_pred cCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 6778888887654 4599999999999999998877643
No 158
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=21.07 E-value=1.2e+02 Score=26.47 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 024194 233 LPLDVIKNDLKSAGMSEAAIEELLRVLSIK 262 (271)
Q Consensus 233 ~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K 262 (271)
.+.+.+.++|.+.|.+++.++++..++..+
T Consensus 87 ~hA~~~~~im~~~Gy~~~~i~rV~~lv~K~ 116 (185)
T PF13875_consen 87 RHAAIAAEIMREAGYDEEEIDRVAALVRKE 116 (185)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhc
Confidence 344555555555555555555555555443
No 159
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=20.31 E-value=1.9e+02 Score=21.11 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhCCC---------CHHHHHHHHHHHhcCCHhH
Q 024194 234 PLDVIKNDLKSAGM---------SEAAIEELLRVLSIKSLTE 266 (271)
Q Consensus 234 ~~~~i~~~L~~lgL---------s~~~~~~L~~~l~~K~~~~ 266 (271)
-...++..|..+|. +++..+.|..+....|+++
T Consensus 17 ~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~~~g~ENfE~ 58 (74)
T PF08823_consen 17 VAREVQEALKRLGYYKGEADGVWDEATEDALRAWAGTENFEE 58 (74)
T ss_pred HHHHHHHHHHHcCCccCCCCCcccHHHHHHHHHHHHHhhHHh
Confidence 35778888888888 7888888888888877653
Done!