Query 024194
Match_columns 271
No_of_seqs 218 out of 1642
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lc0_A Histidyl-tRNA synthetas 100.0 1.7E-41 5.8E-46 327.4 22.3 205 65-269 21-256 (456)
2 3od1_A ATP phosphoribosyltrans 100.0 8.9E-40 3E-44 310.7 21.2 187 71-268 8-201 (400)
3 3net_A Histidyl-tRNA synthetas 100.0 1.9E-39 6.3E-44 313.8 18.9 193 69-263 8-247 (465)
4 3rac_A Histidine-tRNA ligase; 100.0 1.2E-38 4.2E-43 300.4 16.8 187 72-269 22-223 (373)
5 4g85_A Histidine-tRNA ligase, 100.0 3.8E-38 1.3E-42 307.9 19.9 195 65-263 59-286 (517)
6 1z7m_A ATP phosphoribosyltrans 100.0 2E-38 7E-43 295.9 17.0 196 65-262 14-235 (344)
7 4g84_A Histidine--tRNA ligase, 100.0 9.5E-38 3.3E-42 300.1 19.4 193 66-262 7-232 (464)
8 1wu7_A Histidyl-tRNA synthetas 100.0 5.9E-36 2E-40 286.3 23.5 190 71-261 4-221 (434)
9 1h4v_B Histidyl-tRNA synthetas 100.0 2.1E-34 7.1E-39 274.0 18.5 146 72-217 2-158 (421)
10 1htt_A Histidyl-tRNA synthetas 100.0 2.4E-34 8.3E-39 273.7 17.6 147 71-217 2-159 (423)
11 4e51_A Histidine--tRNA ligase; 100.0 4.6E-34 1.6E-38 276.2 17.8 151 69-219 28-189 (467)
12 1qe0_A Histidyl-tRNA synthetas 100.0 1E-30 3.6E-35 248.3 14.2 145 73-217 2-158 (420)
13 2i4l_A Proline-tRNA ligase; al 99.9 1.6E-27 5.4E-32 229.8 12.5 164 50-216 26-211 (458)
14 1usy_A ATP phosphoribosyltrans 99.9 1.4E-27 4.7E-32 216.3 10.5 156 92-263 5-187 (275)
15 3a32_A Probable threonyl-tRNA 99.9 5.7E-27 2E-31 226.6 13.1 139 75-215 37-195 (471)
16 2j3l_A Prolyl-tRNA synthetase; 99.9 1.7E-26 5.9E-31 227.8 15.1 142 74-216 34-191 (572)
17 1nj8_A Proline-tRNA synthetase 99.9 1.2E-25 4.1E-30 217.0 16.5 148 69-216 19-188 (459)
18 1evl_A Threonyl-tRNA synthetas 99.9 6.9E-26 2.4E-30 214.6 14.1 142 74-217 17-174 (401)
19 1nyr_A Threonyl-tRNA synthetas 99.9 2.6E-26 8.9E-31 229.7 11.6 144 74-218 258-418 (645)
20 1hc7_A Prolyl-tRNA synthetase; 99.9 6.5E-26 2.2E-30 219.8 13.7 148 69-216 26-193 (477)
21 1qf6_A THRRS, threonyl-tRNA sy 99.9 1.4E-23 4.8E-28 209.9 13.0 142 74-217 258-415 (642)
22 1nj1_A PROR, proline-tRNA synt 99.9 2.9E-23 1E-27 202.2 14.2 147 69-216 52-220 (501)
23 3uh0_A Threonyl-tRNA synthetas 99.9 7.7E-23 2.6E-27 197.4 13.5 142 74-216 51-212 (460)
24 3ial_A Prolyl-tRNA synthetase; 99.9 2E-22 6.8E-27 196.7 14.4 148 69-216 36-205 (518)
25 4hvc_A Bifunctional glutamate/ 99.9 2.8E-21 9.7E-26 188.7 15.5 148 69-216 43-211 (519)
26 2zt5_A Glycyl-tRNA synthetase; 99.8 1.2E-20 4.1E-25 189.9 12.4 124 75-202 89-304 (693)
27 2dq3_A Seryl-tRNA synthetase; 99.8 4E-20 1.4E-24 176.8 10.4 137 76-216 161-316 (425)
28 1ati_A Glycyl-tRNA synthetase; 99.8 1.1E-19 3.7E-24 177.3 13.7 141 74-217 26-271 (505)
29 1ses_A Seryl-tRNA synthetase; 99.8 8E-19 2.7E-23 167.6 11.8 138 76-217 155-313 (421)
30 2dq0_A Seryl-tRNA synthetase; 99.7 3.8E-18 1.3E-22 164.3 11.2 138 75-216 181-337 (455)
31 3dsq_A Pyrrolysyl-tRNA synthet 99.7 7E-18 2.4E-22 153.7 10.9 128 89-217 72-206 (288)
32 2cja_A Seryl-tRNA synthetase; 99.7 2.1E-17 7.3E-22 161.2 10.3 144 71-216 215-407 (522)
33 3qtc_A Pyrrolysyl-tRNA synthet 99.7 7.2E-16 2.5E-20 140.2 14.4 123 90-216 79-209 (290)
34 3vbb_A Seryl-tRNA synthetase, 99.6 4.6E-15 1.6E-19 144.3 12.7 140 76-216 190-358 (522)
35 1wle_A Seryl-tRNA synthetase; 99.6 4.8E-15 1.6E-19 144.0 12.5 140 76-216 208-368 (501)
36 3lss_A Seryl-tRNA synthetase; 99.5 4.9E-14 1.7E-18 136.2 13.1 140 75-216 196-356 (484)
37 3qne_A Seryl-tRNA synthetase, 99.5 7.3E-14 2.5E-18 134.9 12.3 140 75-216 173-333 (485)
38 3err_A Fusion protein of micro 99.5 9.7E-14 3.3E-18 135.9 13.2 137 76-216 264-421 (536)
39 1nnh_A Asparaginyl-tRNA synthe 99.4 6.4E-13 2.2E-17 121.2 12.0 113 83-204 11-128 (294)
40 1x54_A Asparaginyl-tRNA synthe 99.3 1E-11 3.5E-16 118.9 11.2 103 85-204 133-238 (434)
41 1wyd_A Hypothetical aspartyl-t 99.2 2.3E-11 7.9E-16 116.3 10.9 102 86-204 133-237 (429)
42 1g5h_A Mitochondrial DNA polym 99.2 2E-12 7E-17 124.4 3.6 143 78-220 52-231 (454)
43 1n9w_A Aspartyl-tRNA synthetas 99.2 1.8E-11 6.1E-16 116.8 7.5 102 85-203 123-227 (422)
44 3mf2_A BLL0957 protein; aminoa 99.1 6.9E-10 2.4E-14 102.7 12.3 137 77-216 54-227 (346)
45 1eov_A ASPRS, aspartyl-tRNA sy 99.1 8.5E-10 2.9E-14 107.0 13.0 101 86-202 177-281 (487)
46 3ikl_A DNA polymerase subunit 99.0 4.5E-10 1.5E-14 107.9 8.8 129 77-220 93-241 (459)
47 3l4g_A Phenylalanyl-tRNA synth 99.0 3.1E-09 1.1E-13 103.1 13.5 134 84-217 221-402 (508)
48 3a74_A Lysyl-tRNA synthetase; 99.0 3.1E-09 1.1E-13 103.1 13.1 104 86-204 173-279 (493)
49 2du3_A O-phosphoseryl-tRNA syn 98.9 5.6E-09 1.9E-13 101.8 9.8 76 142-217 180-261 (534)
50 1e1o_A Lysyl-tRNA synthetase, 98.8 2.7E-08 9.2E-13 96.8 13.6 106 86-204 182-288 (504)
51 1b7y_A Phers, protein (phenyla 98.8 3.4E-08 1.2E-12 92.0 13.2 140 71-216 86-248 (350)
52 3a5y_A GENX, putative lysyl-tR 98.8 3E-08 1E-12 92.2 12.1 110 83-204 32-146 (345)
53 2du7_A O-phosphoseryl-tRNA syn 98.7 1E-07 3.5E-12 93.0 14.0 131 87-217 56-273 (549)
54 2rhq_A Phenylalanyl-tRNA synth 98.6 2.2E-07 7.5E-12 84.4 12.2 123 88-216 53-187 (294)
55 3nem_A Aspartyl-tRNA synthetas 98.6 3.2E-07 1.1E-11 87.8 12.6 104 86-203 136-240 (438)
56 2odr_B Phosphoseryl-tRNA synth 98.6 1.2E-06 4.2E-11 86.4 15.4 131 87-217 64-280 (648)
57 2xgt_A Asparaginyl-tRNA synthe 98.5 5.9E-07 2E-11 85.9 12.9 103 85-204 130-235 (435)
58 2odr_A Phosphoseryl-tRNA synth 98.5 1.3E-06 4.4E-11 86.4 15.4 131 87-217 64-280 (665)
59 2odr_D Phosphoseryl-tRNA synth 98.5 1.3E-06 4.6E-11 86.4 15.4 131 87-217 64-280 (685)
60 2odr_C Phosphoseryl-tRNA synth 98.5 1.5E-06 5E-11 86.3 15.2 131 87-217 64-280 (701)
61 3ica_A Phenylalanyl-tRNA synth 98.4 2.3E-06 7.9E-11 74.0 11.9 127 89-216 5-154 (213)
62 3ig2_A Phenylalanyl-tRNA synth 98.4 3.3E-06 1.1E-10 73.0 12.8 126 90-216 6-154 (213)
63 1c0a_A Aspartyl tRNA synthetas 98.4 2.6E-06 8.9E-11 84.3 13.1 102 87-204 138-243 (585)
64 1l0w_A Aspartyl-tRNA synthetas 98.4 2.9E-06 9.9E-11 83.8 12.8 104 87-204 144-249 (580)
65 3bju_A Lysyl-tRNA synthetase; 98.3 5.1E-06 1.8E-10 81.1 13.2 105 86-203 175-280 (521)
66 3l4g_B Phenylalanyl-tRNA synth 98.3 4.6E-06 1.6E-10 82.5 12.9 127 90-217 393-526 (589)
67 4ex5_A Lysine--tRNA ligase; st 98.3 5.4E-06 1.8E-10 81.0 13.2 105 86-203 203-308 (529)
68 3m4p_A Ehasnrs, asparaginyl-tR 98.2 7.1E-06 2.4E-10 78.8 11.7 103 86-203 155-258 (456)
69 4ah6_A Aspartate--tRNA ligase, 98.2 1.5E-05 5E-10 79.2 13.8 102 87-204 148-253 (617)
70 3i7f_A Aspartyl-tRNA synthetas 98.2 9.1E-06 3.1E-10 79.6 11.2 102 86-201 243-346 (548)
71 2rhq_B Phenylalanyl-tRNA synth 98.2 1.1E-05 3.7E-10 82.5 12.1 126 87-216 492-635 (795)
72 3pco_A Phenylalanyl-tRNA synth 98.0 4.7E-06 1.6E-10 76.8 6.1 133 70-213 91-234 (327)
73 1b7y_B Phers, protein (phenyla 97.8 6.3E-05 2.2E-09 76.7 10.8 118 88-216 489-623 (785)
74 3cmq_A Phenylalanyl-tRNA synth 97.2 0.00084 2.9E-08 63.7 8.9 102 86-198 46-163 (415)
75 3pco_B Phenylalanyl-tRNA synth 97.1 0.0015 5.1E-08 66.7 9.8 120 93-215 494-630 (795)
76 3od1_A ATP phosphoribosyltrans 68.9 4.5 0.00016 37.6 4.5 58 202-262 167-224 (400)
77 3net_A Histidyl-tRNA synthetas 64.2 4.4 0.00015 38.3 3.5 37 230-266 182-218 (465)
78 3rac_A Histidine-tRNA ligase; 53.0 6.2 0.00021 36.3 2.3 34 205-238 191-224 (373)
79 3rf1_A Glycyl-tRNA synthetase 52.5 35 0.0012 30.3 6.9 97 88-217 25-127 (311)
80 1j5w_A Glycyl-tRNA synthetase 48.4 36 0.0012 30.1 6.2 53 165-217 57-115 (298)
81 3lc0_A Histidyl-tRNA synthetas 45.2 12 0.00042 35.2 3.1 38 231-268 186-226 (456)
82 2lbf_B 60S acidic ribosomal pr 44.9 39 0.0013 23.5 4.9 36 232-267 18-55 (70)
83 3a1y_A 50S ribosomal protein P 40.7 59 0.002 21.6 5.1 35 233-267 17-53 (58)
84 2lz1_A Nuclear factor erythroi 37.9 48 0.0016 24.3 4.5 29 231-259 41-69 (90)
85 1sfx_A Conserved hypothetical 35.2 94 0.0032 21.5 6.0 56 206-265 9-64 (109)
86 4g84_A Histidine--tRNA ligase, 33.6 23 0.00078 32.8 2.9 33 231-263 168-200 (464)
87 2kz5_A Transcription factor NF 32.3 67 0.0023 23.6 4.5 29 230-258 40-68 (91)
88 1skn_P DNA-binding domain of S 31.6 70 0.0024 23.5 4.5 27 232-258 38-64 (92)
89 2k02_A Ferrous iron transport 31.5 37 0.0013 24.6 3.1 39 226-264 7-45 (87)
90 12as_A Asparagine synthetase; 31.3 64 0.0022 29.2 5.3 106 89-202 7-126 (330)
91 1xn7_A Hypothetical protein YH 29.4 35 0.0012 24.1 2.6 39 226-264 7-45 (78)
92 4g85_A Histidine-tRNA ligase, 29.2 36 0.0012 32.3 3.5 34 231-264 221-254 (517)
93 3fia_A Intersectin-1; EH 1 dom 27.6 94 0.0032 23.8 5.0 31 233-263 49-79 (121)
94 1usy_A ATP phosphoribosyltrans 24.9 66 0.0023 27.8 4.2 12 207-218 163-174 (275)
95 3izc_v 60S acidic ribosomal pr 23.1 1.1E+02 0.0037 23.0 4.5 35 233-267 17-53 (106)
96 2lbf_A 60S acidic ribosomal pr 23.0 81 0.0028 21.8 3.5 35 233-267 23-59 (69)
97 1x59_A Histidyl-tRNA synthetas 20.4 46 0.0016 23.2 1.8 16 67-82 57-72 (73)
98 3mva_O Transcription terminati 20.1 1.1E+02 0.0038 27.1 4.8 51 206-256 22-72 (343)
No 1
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=1.7e-41 Score=327.39 Aligned_cols=205 Identities=49% Similarity=0.923 Sum_probs=176.9
Q ss_pred CccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEe
Q 024194 65 SDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVA 144 (271)
Q Consensus 65 ~~~~~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~la 144 (271)
...+.|+.+++|+|++||+|.+++.+++|++.++++|++|||++|.||+||+.++|.+++|+++.++||+|.|++|+.++
T Consensus 21 ~~~~~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~ 100 (456)
T 3lc0_A 21 SMQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVA 100 (456)
T ss_dssp ----CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEE
T ss_pred chhhccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEe
Confidence 34556889999999999999999999999999999999999999999999999999887787778899999999999999
Q ss_pred eCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCC--
Q 024194 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSI-- 215 (271)
Q Consensus 145 LRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi-- 215 (271)
||||+|+++||+++++....++|+|+||+|+|||+++++.||+|||+|+|+|+||.+++. ++.++|+.+|+
T Consensus 101 LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~ 180 (456)
T 3lc0_A 101 LRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSS 180 (456)
T ss_dssp ECSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCT
T ss_pred cCCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCCCC
Confidence 999999999999999877678899999999999999999999999999999999998754 56677777777
Q ss_pred Cc----------------------cchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHHhc
Q 024194 216 PE----------------------HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG 269 (271)
Q Consensus 216 ~~----------------------~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~ 269 (271)
++ +....++.++|++++.+++.+++.|..+|++++.++.|.+++..++++.+.+
T Consensus 181 ~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~ 256 (456)
T 3lc0_A 181 KDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQ 256 (456)
T ss_dssp TTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHH
T ss_pred CceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHH
Confidence 32 2233567788999999999999999999999999999999998888776654
No 2
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=8.9e-40 Score=310.73 Aligned_cols=187 Identities=21% Similarity=0.302 Sum_probs=156.6
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T 150 (271)
+.+++|+|++||+|.+++.+++|++.++++|++|||++|.||+||+.++|.++ |+...++||+|.|++|+.++||||+|
T Consensus 8 ~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g~~~~~~my~f~D~~g~~l~LRpd~T 86 (400)
T 3od1_A 8 FMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-SAILDQQLFKLLDQQGNTLVLRPDMT 86 (400)
T ss_dssp CTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-SSSCGGGSCEEECTTSCEEEECSCSH
T ss_pred hcccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-CCccccceEEEECCCCCEEEECCCCH
Confidence 56899999999999999999999999999999999999999999999999876 66678999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchhhH
Q 024194 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFGKV 223 (271)
Q Consensus 151 ~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~~v 223 (271)
+++||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++. ++.++|+.+|+++..
T Consensus 87 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~~~~---- 162 (400)
T 3od1_A 87 APIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLSEFK---- 162 (400)
T ss_dssp HHHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCCSEE----
T ss_pred HHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCCceE----
Confidence 999999999876678999999999999999999999999999999999998865 678899999997633
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHHh
Q 024194 224 CIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE 268 (271)
Q Consensus 224 ~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~ 268 (271)
++.++...++.+++.+|++++..+.+.+++..+|..+++
T Consensus 163 ------i~l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~ 201 (400)
T 3od1_A 163 ------VAIGHVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYR 201 (400)
T ss_dssp ------EEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHH
T ss_pred ------EEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHH
Confidence 233555556666666666666666666666655554443
No 3
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=1.9e-39 Score=313.75 Aligned_cols=193 Identities=24% Similarity=0.463 Sum_probs=159.4
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccc-cEEEeeC---C-----
Q 024194 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQ-LYCFEDR---G----- 139 (271)
Q Consensus 69 ~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~-~y~f~D~---~----- 139 (271)
.++++++|+||+||+|+++..++++++.++++|++|||++|.||+||+.++|..+ | +..++ ||+|.|+ +
T Consensus 8 ~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~~~ke~m~~~~d~~~~g~~~~~ 85 (465)
T 3net_A 8 DKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-NQGDNIIYGLEPILPPNRQAEK 85 (465)
T ss_dssp -CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-CC--CBEEEEEEEC--------
T ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-CCCccceEEEeccccccccccc
Confidence 4577899999999999999999999999999999999999999999999999988 7 45677 9999998 3
Q ss_pred -------CCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH----H----
Q 024194 140 -------NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV----T---- 204 (271)
Q Consensus 140 -------G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~----~---- 204 (271)
|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++ +
T Consensus 86 ~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi 165 (465)
T 3net_A 86 DKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMP 165 (465)
T ss_dssp --------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHH
T ss_pred ccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHH
Confidence 8999999999999999999987666789999999999999999999999999999999998753 2
Q ss_pred -HHHHHHHhCCC----------------------CccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 024194 205 -VLQEVLRCHSI----------------------PEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI 261 (271)
Q Consensus 205 -ll~~~L~~lGi----------------------~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~ 261 (271)
++.++|+.+|+ ++.....++.++|++++.+++.++..|.+.|++++.++.+.+++..
T Consensus 166 ~l~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~ 245 (465)
T 3net_A 166 AIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKI 245 (465)
T ss_dssp HHHHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 33444455554 4433456778888888888999999999999999999999998875
Q ss_pred CC
Q 024194 262 KS 263 (271)
Q Consensus 262 K~ 263 (271)
.+
T Consensus 246 ~g 247 (465)
T 3net_A 246 DG 247 (465)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 4
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=1.2e-38 Score=300.40 Aligned_cols=187 Identities=22% Similarity=0.308 Sum_probs=164.9
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccc-cccEEEeeCCCCeEeeCCCCh
Q 024194 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR-DQLYCFEDRGNRRVALRPELT 150 (271)
Q Consensus 72 ~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~-~~~y~f~D~~G~~laLRPD~T 150 (271)
.+++|+|++||+|.+++.+++|++.++++|++|||++|.||+||+.++|..+ |+... ++||+|.|++|+.++||||+|
T Consensus 22 ~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~-g~~~~~~~my~~~D~~g~~l~LRpd~T 100 (373)
T 3rac_A 22 FADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRA-RSPESSRDWIRLFDGGGDAVALRPEMT 100 (373)
T ss_dssp CCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTT-SCTTSCCCCCBCCCCSSSCEEECSSSH
T ss_pred cCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhc-CCccchhceEEEECCCCCEEEECCcCH
Confidence 4689999999999999999999999999999999999999999999999876 65666 899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEEeceeecCCC------CCCCCcceEEeEEEEEecC-cHH-------HHHHHHHhCCCC
Q 024194 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERM------TRGRRREHYQWNMDIIGVP-AVT-------VLQEVLRCHSIP 216 (271)
Q Consensus 151 ~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~------~~Gr~REf~Q~gvEiiG~~-~~~-------ll~~~L~~lGi~ 216 (271)
+++||+++++....+.|+|+||+|+|||++++ +.||.|||+|+|+|+||.+ ++. ++.++|+.+|++
T Consensus 101 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 101 PSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999876556789999999999999999 8999999999999999998 654 778999999997
Q ss_pred ccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhHHhc
Q 024194 217 EHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG 269 (271)
Q Consensus 217 ~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~l~~ 269 (271)
+.. ++.++...++.+++.+|++++..+.+++++..+|..++++
T Consensus 181 ~~~----------i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~ 223 (373)
T 3rac_A 181 HHR----------IVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRE 223 (373)
T ss_dssp SCE----------EEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHH
T ss_pred ceE----------EEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHH
Confidence 633 3458889999999999999999999999999999877664
No 5
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=307.88 Aligned_cols=195 Identities=28% Similarity=0.503 Sum_probs=158.9
Q ss_pred CccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEe
Q 024194 65 SDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVA 144 (271)
Q Consensus 65 ~~~~~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~la 144 (271)
.+.++++.+++|+||+||+|.++..+++|++.++++|++|||++|.||+||+.++|.+++|+. .++||+|.|++|+.++
T Consensus 59 ~~~~~~~~l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~-~~~my~f~D~~g~~l~ 137 (517)
T 4g85_A 59 DESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQGGELLS 137 (517)
T ss_dssp ---CCCCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC-------CSCBBCCTTSCCEE
T ss_pred cccccceeeeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC-cceeEEEECCCCCEEE
Confidence 345667889999999999999999999999999999999999999999999999998887764 5779999999999999
Q ss_pred eCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCC--CCCCCcceEEeEEEEEecCcH---H-----HHHHHHHhCC
Q 024194 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPAV---T-----VLQEVLRCHS 214 (271)
Q Consensus 145 LRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~--~~Gr~REf~Q~gvEiiG~~~~---~-----ll~~~L~~lG 214 (271)
||||+|+|+||+++++. ..|+|+||+|+|||+|+| +.||+|||+|+|+|+||..+. + ++.++|+.+|
T Consensus 138 LRPd~T~~~aR~~~~~~---~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lg 214 (517)
T 4g85_A 138 LRYDLTVPFARYLAMNK---LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQ 214 (517)
T ss_dssp ECSCSHHHHHHHHHHTT---CSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHC
T ss_pred eCCcCcHHHHHHHHhCC---CCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhc
Confidence 99999999999999864 469999999999999988 579999999999999997542 1 4556666666
Q ss_pred CCc----------------------cchhhHHHHHHhhhcCCHHHHHHHH-HhCCCCHHHHHHHHHHHhcCC
Q 024194 215 IPE----------------------HLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 215 i~~----------------------~~~~~v~~~ldkl~~~~~~~i~~~L-~~lgLs~~~~~~L~~~l~~K~ 263 (271)
+.+ ..+..++..+|++++.+++.+...+ ...+++++..+.|.+++..++
T Consensus 215 l~~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g 286 (517)
T 4g85_A 215 IGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 286 (517)
T ss_dssp CCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCB
T ss_pred CCcccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 654 3344567788999999999887765 678999999999998887653
No 6
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=2e-38 Score=295.93 Aligned_cols=196 Identities=17% Similarity=0.281 Sum_probs=153.5
Q ss_pred CccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhh---hhccccccccEEEeeCCCC
Q 024194 65 SDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR---KAGEEIRDQLYCFEDRGNR 141 (271)
Q Consensus 65 ~~~~~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~---~~g~~~~~~~y~f~D~~G~ 141 (271)
+....+.++++|+|++||+|.+++.+++|++.++++|++|||++|.||+||+.++|.+ +.++...++||+|.|++|+
T Consensus 14 ~~~~~~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~ 93 (344)
T 1z7m_A 14 EGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQ 93 (344)
T ss_dssp --------CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCC
T ss_pred cchhhhccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCC
Confidence 4445667899999999999999999999999999999999999999999999999987 3344567899999999999
Q ss_pred eEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCC
Q 024194 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHS 214 (271)
Q Consensus 142 ~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lG 214 (271)
.++||||+|+++||+++++ ..+.|+|+||+|+|||+|+|+.||.|||+|+|+|+||.+++. ++.++|+.+|
T Consensus 94 ~l~LRpd~T~~~aR~~~~~--~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lg 171 (344)
T 1z7m_A 94 SITLRYDFTLPLVRLYSQI--KDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLG 171 (344)
T ss_dssp EEEECCCSHHHHHHHHHTC--CSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCcHHHHHHHHhc--CCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999987 456899999999999999999999999999999999998864 7789999999
Q ss_pred CCccchh--h--------------HHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 024194 215 IPEHLFG--K--------------VCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 262 (271)
Q Consensus 215 i~~~~~~--~--------------v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K 262 (271)
+++..+. . ...+.+.+++.+...+++.++..+++++..+.|.+++...
T Consensus 172 l~~~~i~l~~~gi~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~g 235 (344)
T 1z7m_A 172 LNKTVFEIGSAKFFQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITN 235 (344)
T ss_dssp CSSEEEEEEEHHHHHHHHHHTTTCHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCHHHHHHHhCCCHHHHHHHHHHHHhhCHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 9753221 0 0011122345556667777777889999999998888763
No 7
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=9.5e-38 Score=300.05 Aligned_cols=193 Identities=27% Similarity=0.494 Sum_probs=157.1
Q ss_pred ccccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEee
Q 024194 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL 145 (271)
Q Consensus 66 ~~~~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laL 145 (271)
..+..+.+++|+||+||+|.+++.+++|++.++++|++|||++|.||+||+.|+|.+++|+. .++||+|.|++|+.++|
T Consensus 7 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~-~~~~y~f~D~~g~~l~L 85 (464)
T 4g84_A 7 ELRRQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQGGELLSL 85 (464)
T ss_dssp ------CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-----CCCBBCCCSSCCEEE
T ss_pred hHhhccceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC-cceeEEEECCCCCEEEe
Confidence 34455788999999999999999999999999999999999999999999999998877754 57899999999999999
Q ss_pred CCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCC--CCCCCcceEEeEEEEEecCcH---H-----HHHHHHHhCCC
Q 024194 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPAV---T-----VLQEVLRCHSI 215 (271)
Q Consensus 146 RPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~--~~Gr~REf~Q~gvEiiG~~~~---~-----ll~~~L~~lGi 215 (271)
|||+|+|+||+++++. ..|+|+||+|+|||+|+| +.||+|||+|+|+|+||..+. + ++.++|+.+|+
T Consensus 86 RPd~T~~~aR~~~~~~---~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl 162 (464)
T 4g84_A 86 RYDLTVPFARYLAMNK---LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI 162 (464)
T ss_dssp CSCSHHHHHHHHHHTT---CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCcHHHHHHHHhcC---CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCC
Confidence 9999999999999864 479999999999999988 567999999999999996432 2 55667777777
Q ss_pred Cc----------------------cchhhHHHHHHhhhcCCHHHHHHHH-HhCCCCHHHHHHHHHHHhcC
Q 024194 216 PE----------------------HLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIK 262 (271)
Q Consensus 216 ~~----------------------~~~~~v~~~ldkl~~~~~~~i~~~L-~~lgLs~~~~~~L~~~l~~K 262 (271)
++ ..+..++..+|++++..++.+...+ ...+++++.++.|.+++..+
T Consensus 163 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 232 (464)
T 4g84_A 163 GDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQH 232 (464)
T ss_dssp CCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCE
T ss_pred CCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Confidence 54 3334567778889999998887765 67899999999998887654
No 8
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=5.9e-36 Score=286.26 Aligned_cols=190 Identities=36% Similarity=0.674 Sum_probs=167.6
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T 150 (271)
+++++|+|++||+|.+++.+++|++.++++|++|||+||.||+||+.++|..++|+...++||+|.|++|+.++||||+|
T Consensus 4 ~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t 83 (434)
T 1wu7_A 4 LQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEAT 83 (434)
T ss_dssp CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSH
T ss_pred cccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCCh
Confidence 55789999999999999999999999999999999999999999999999887787778899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCc-cch--
Q 024194 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPE-HLF-- 220 (271)
Q Consensus 151 ~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~-~~~-- 220 (271)
+++||+++++ +..++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++.. ++.++|+.||+++ ..+
T Consensus 84 ~~~aR~~~~~-~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~~~~~i~l 162 (434)
T 1wu7_A 84 PSTVRMVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRI 162 (434)
T ss_dssp HHHHHHHTTC-TTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred HHHHHHHHhc-CCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCCCceEEEE
Confidence 9999999987 4347899999999999999999999999999999999998864 6778999999964 211
Q ss_pred ---------------h---hHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 024194 221 ---------------G---KVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI 261 (271)
Q Consensus 221 ---------------~---~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~ 261 (271)
. .++..+++.++..++.++..|+..+++.+..+.+.+++..
T Consensus 163 ~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 221 (434)
T 1wu7_A 163 NSRKIMEEIIGGMTSSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSG 221 (434)
T ss_dssp EEHHHHHHHHHTTCSSCHHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred CChhhHHHHHHHhCcHhHHHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 1 1455566667777888888888889998888888888864
No 9
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=2.1e-34 Score=274.04 Aligned_cols=146 Identities=27% Similarity=0.498 Sum_probs=134.1
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeCCC
Q 024194 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPE 148 (271)
Q Consensus 72 ~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~---~~~~~y~f~D~~G~~laLRPD 148 (271)
++++|+|++||+|.+++.+++|++.++++|++|||++|.||+||+.++|..+.|++ ..++||+|.|++|+.++||||
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 81 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPE 81 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCc
Confidence 57899999999999999999999999999999999999999999999998766652 467999999999999999999
Q ss_pred ChHHHHHHHHHcC-CCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCc
Q 024194 149 LTPSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPE 217 (271)
Q Consensus 149 ~T~~iAR~~a~~~-~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~ 217 (271)
+|+++||+++++. ...++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++.. ++.++|+.+|+++
T Consensus 82 ~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~ 158 (421)
T 1h4v_B 82 GTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRR 158 (421)
T ss_pred chHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCCc
Confidence 9999999999763 3357899999999999999999999999999999999988754 6779999999985
No 10
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=2.4e-34 Score=273.73 Aligned_cols=147 Identities=25% Similarity=0.480 Sum_probs=135.2
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeCC
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRP 147 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~---~~~~~y~f~D~~G~~laLRP 147 (271)
+++++|+|++||+|.+++.+++|++.++++|++|||+||.||+||+.++|..+.|++ ..++||+|.|++|+.++|||
T Consensus 2 m~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrp 81 (423)
T 1htt_A 2 KNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRP 81 (423)
T ss_dssp -CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECS
T ss_pred CCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCC
Confidence 468999999999999999999999999999999999999999999999998766652 46799999999999999999
Q ss_pred CChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCC-Cc
Q 024194 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSI-PE 217 (271)
Q Consensus 148 D~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi-~~ 217 (271)
|+|+++||+++++....++|+|+||+|+|||+|+|+.||.|||+|+|+|+||.++.. ++.++|+.+|+ ++
T Consensus 82 d~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~~ 159 (423)
T 1htt_A 82 EGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH 159 (423)
T ss_dssp CSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred CchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 999999999998765557999999999999999999999999999999999998864 67789999999 64
No 11
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=4.6e-34 Score=276.22 Aligned_cols=151 Identities=25% Similarity=0.434 Sum_probs=134.9
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCC-CCeEe
Q 024194 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG-NRRVA 144 (271)
Q Consensus 69 ~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~---~~~~~y~f~D~~-G~~la 144 (271)
.|+++++|+|++||+|.+++.+++|++.++++|++|||++|.||+||+.++|..+.|+. ..++||+|.|++ |+.++
T Consensus 28 ~~~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~ 107 (467)
T 4e51_A 28 KLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLT 107 (467)
T ss_dssp --CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEE
T ss_pred hhcCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEE
Confidence 46789999999999999999999999999999999999999999999999998876762 468999999999 99999
Q ss_pred eCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCc
Q 024194 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPE 217 (271)
Q Consensus 145 LRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~ 217 (271)
||||+|+++||+++++....++|+|+||+|+|||+|+++.||.|||+|+|+|+||.+++. ++.++|+.+|+++
T Consensus 108 LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~~ 187 (467)
T 4e51_A 108 LRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTG 187 (467)
T ss_dssp ECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred eCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999998765557899999999999999999999999999999999998754 7789999999987
Q ss_pred cc
Q 024194 218 HL 219 (271)
Q Consensus 218 ~~ 219 (271)
..
T Consensus 188 ~~ 189 (467)
T 4e51_A 188 IK 189 (467)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 12
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.97 E-value=1e-30 Score=248.27 Aligned_cols=145 Identities=28% Similarity=0.630 Sum_probs=122.0
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeCCCC
Q 024194 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPEL 149 (271)
Q Consensus 73 ~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~---~~~~~y~f~D~~G~~laLRPD~ 149 (271)
+++|+|++||+|.+++.+++|++.++++|.+|||++|.||+||+.++|..+.|+. ..++||+|.|++|+.++||||+
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~ 81 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEG 81 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCC
Confidence 6899999999999999999999999999999999999999999999998764432 4678999999999999999999
Q ss_pred hHHHHHHHHHcCCC--CCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCc
Q 024194 150 TPSLARLVIQKGKS--VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPE 217 (271)
Q Consensus 150 T~~iAR~~a~~~~~--~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~ 217 (271)
|++++|+++++... .++|+|+||+|+|||+|+++.||.|||+|+|+|+||.++.. ++.++|+.+|+++
T Consensus 82 t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~~ 158 (420)
T 1qe0_A 82 TAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKH 158 (420)
T ss_dssp HHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCCc
Confidence 99999999976543 47899999999999999999999999999999999998864 6679999999985
No 13
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.94 E-value=1.6e-27 Score=229.83 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=137.9
Q ss_pred CCCCCCcccCCCCCCCccccc----cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhc
Q 024194 50 NGGRSGARSLSPSPVSDDLQK----IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG 125 (271)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~----~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g 125 (271)
...|+.+-++.++...+-..| +-.+.|+|++||+|.+++.+++|++.++++|.++||+||.||+|++.++|..+ |
T Consensus 26 ~~~~t~~~~~~~a~~~~h~ll~r~g~i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~s-g 104 (458)
T 2i4l_A 26 FFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRES-G 104 (458)
T ss_dssp SCCCCCSSCCTTCCSHHHHHHHHTTCEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHH-T
T ss_pred hhhhhhccChhhcCcchHHHHhhcCCeeccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhc-C
Confidence 455555555544442221111 33467999999999999999999999999999999999999999999999765 6
Q ss_pred c--ccccccEEEeeCCCCeEeeCC---CChHHHHHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEE
Q 024194 126 E--EIRDQLYCFEDRGNRRVALRP---ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDI 197 (271)
Q Consensus 126 ~--~~~~~~y~f~D~~G~~laLRP---D~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEi 197 (271)
+ ...++||+|.|++|+.++||| |+|++++|..+... .++|+|+||+|+|||+| +|+.| |.|||+|+|+|+
T Consensus 105 ~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~--~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~ 182 (458)
T 2i4l_A 105 RYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSY--KSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYS 182 (458)
T ss_dssp HHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBG--GGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEE
T ss_pred CccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhc--cccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEE
Confidence 5 357899999999999999999 89999999988754 36999999999999999 99999 999999999999
Q ss_pred EecCcHH----------HHHHHHHhCCCC
Q 024194 198 IGVPAVT----------VLQEVLRCHSIP 216 (271)
Q Consensus 198 iG~~~~~----------ll~~~L~~lGi~ 216 (271)
||.++.. ++.++|+.||++
T Consensus 183 f~~~~~~ad~e~~~~~~~~~~i~~~lGl~ 211 (458)
T 2i4l_A 183 FDVDEAGARKSYNKMFVAYLRTFARMGLK 211 (458)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9976543 377899999997
No 14
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.94 E-value=1.4e-27 Score=216.34 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=125.1
Q ss_pred HHHHHHH--HHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCC-CCe
Q 024194 92 WLFHNFQ--EVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS-LPL 168 (271)
Q Consensus 92 ~i~~~l~--~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~-~P~ 168 (271)
++++.++ ++|++|||++|.||+||+.++|.. + +|.|++|+.++||||+|+|+| +++....+ .|+
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-------d---~f~d~~g~~l~LRpd~T~~~a---~~~~~~~~~~p~ 71 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-------N---FFLDRKGNLFSIREDFTKTVL---NHRKRYSPDSQI 71 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-------S---CEEETTSCEEEECCCHHHHHH---HHHTTCTTCCCE
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc-------c---ccCCCCCCEEEeCCcChHHHH---HHHhhcCCCCce
Confidence 4566666 999999999999999999999954 2 668999999999999999999 44544556 899
Q ss_pred EEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCccchh--------hHH---------
Q 024194 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPEHLFG--------KVC--------- 224 (271)
Q Consensus 169 K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~~~~~--------~v~--------- 224 (271)
|+||+|+|||+++++. |||+|+|+|+||.+++. ++.++|+.+|+++..+. .+.
T Consensus 72 R~~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~~~~~~~~~~ 148 (275)
T 1usy_A 72 KVWYADFVYRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKEIPKDLHE 148 (275)
T ss_dssp EEECCEEEEEEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTHHHHHHTTSCGGGHH
T ss_pred EEEEeceEEecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCCCeEEEeCCHHHHHHHHHhCCHHHHH
Confidence 9999999999998876 99999999999998864 77899999999753221 011
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 024194 225 IIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 225 ~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~ 263 (271)
.+.+-+++.+...+++.++..+++++..+.+.+++..++
T Consensus 149 ~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g 187 (275)
T 1usy_A 149 KVLNLIDTKNLAEIEFLSHMKKIDLSRVEKIIEDSIYRR 187 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCCCTHHHHHHHHHHHCC
T ss_pred HHHHHHHccCHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Confidence 112224555666778888888898888888888888754
No 15
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.94 E-value=5.7e-27 Score=226.65 Aligned_cols=139 Identities=25% Similarity=0.320 Sum_probs=126.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChHH
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
+|+|++||+|.+++.+++|++.++++|.++||++|.||+|++.++|..+ |+ ...++||+| |++|+.++||||+|++
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~s-g~~~~~~~emy~~-d~~~~~l~LRP~~t~~ 114 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVS-GHIEFYRNNMYLF-DIEGHEFAVKPMNCPY 114 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHT-CCCTTGGGGSEEE-EETTEEEEECSCSHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhc-cCccccccceEEE-ecCCcEEEEccccHHH
Confidence 7999999999999999999999999999999999999999999999875 43 247899999 9999999999999999
Q ss_pred HHHHHHHcCC-CC---CCCeEEEEEeceeecCCCC--CC--CCcceEEeEEEEEecCcHH---------HHHHHHHh-CC
Q 024194 153 LARLVIQKGK-SV---SLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRC-HS 214 (271)
Q Consensus 153 iAR~~a~~~~-~~---~~P~K~yyig~VfR~e~~~--~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~-lG 214 (271)
++|+++.+.. .. ++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++.. ++.++|+. ||
T Consensus 115 i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lG 194 (471)
T 3a32_A 115 HILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFK 194 (471)
T ss_dssp HHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999988633 22 7999999999999999888 89 9999999999999987643 67789999 99
Q ss_pred C
Q 024194 215 I 215 (271)
Q Consensus 215 i 215 (271)
+
T Consensus 195 l 195 (471)
T 3a32_A 195 L 195 (471)
T ss_dssp C
T ss_pred C
Confidence 9
No 16
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.94 E-value=1.7e-26 Score=227.77 Aligned_cols=142 Identities=19% Similarity=0.262 Sum_probs=128.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
+.++|++||+|.+++.+++|++.++++|+++||++|.||+|++.++|..+ |+ ...++||+|.|++|+.++|||+.|+
T Consensus 34 ~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~s-G~~~~~~~~m~~~~d~~~~~~~LrP~~~~ 112 (572)
T 2j3l_A 34 QVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKES-GRYETYGPNLYRLKDRNDRDYILGPTHEE 112 (572)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHH-SHHHHSCTTSCEEECTTCCEEEECSCCHH
T ss_pred ccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhc-CCccccchheEEEecCCCCeEEEccccHH
Confidence 46899999999999999999999999999999999999999999999754 64 2578999999999999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeEEEEEeceeecCCC-CCC--CCcceEEeEEEEEecCcHH----------HHHHHHHhCCCC
Q 024194 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHYQWNMDIIGVPAVT----------VLQEVLRCHSIP 216 (271)
Q Consensus 152 ~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~-~~G--r~REf~Q~gvEiiG~~~~~----------ll~~~L~~lGi~ 216 (271)
+++|+++.... +.++|+|+||+|+|||+|++ +.| |.|||+|+|+|+||.+... ++.++|+.||++
T Consensus 113 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~ 191 (572)
T 2j3l_A 113 TFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLE 191 (572)
T ss_dssp HHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999998754 34799999999999999987 577 9999999999999996543 467899999997
No 17
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.93 E-value=1.2e-25 Score=216.96 Aligned_cols=148 Identities=25% Similarity=0.405 Sum_probs=131.5
Q ss_pred ccccc-CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCC----CC
Q 024194 69 QKIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRG----NR 141 (271)
Q Consensus 69 ~~~~~-~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~----G~ 141 (271)
.+++. ..++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.+++|+ ...++||+|.|++ |+
T Consensus 19 ~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~ 98 (459)
T 1nj8_A 19 EIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDV 98 (459)
T ss_dssp SSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEE
T ss_pred CCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCC
Confidence 34555 57899999999999999999999999999999999999999999999876674 3578999999986 89
Q ss_pred eEeeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCC-CCC--CCcceE-EeEEEEEecCcHH----------HH
Q 024194 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHY-QWNMDIIGVPAVT----------VL 206 (271)
Q Consensus 142 ~laLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~-~~G--r~REf~-Q~gvEiiG~~~~~----------ll 206 (271)
.++|||+.|++++|+++.+.. +.++|+|+||+|+|||+|.+ ++| |.|||+ |+|++++|.+... ++
T Consensus 99 ~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~ 178 (459)
T 1nj8_A 99 KLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIY 178 (459)
T ss_dssp EEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHH
Confidence 999999999999999987654 34799999999999999998 889 999999 9999999987543 56
Q ss_pred HHHHHhCCCC
Q 024194 207 QEVLRCHSIP 216 (271)
Q Consensus 207 ~~~L~~lGi~ 216 (271)
.++++.||++
T Consensus 179 ~~~~~~LGl~ 188 (459)
T 1nj8_A 179 KKFFDTLGIP 188 (459)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHCCCc
Confidence 6888999997
No 18
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.93 E-value=6.9e-26 Score=214.57 Aligned_cols=142 Identities=19% Similarity=0.279 Sum_probs=126.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
+.++|++||+|.+++.+++|++.++++|.++||++|.||+|++.++|.+ +|+. ..++||+ .|++|+.++|||+.|+
T Consensus 17 ~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~~~~~LrP~~~~ 94 (401)
T 1evl_A 17 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMNCP 94 (401)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETTEEEEECSCSHH
T ss_pred CCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCCceEEEcCCCCH
Confidence 4589999999999999999999999999999999999999999999987 4753 4688999 9999999999999999
Q ss_pred HHHHHHHHcCCC-CCCCeEEEEEeceeecCC--CCCC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCc
Q 024194 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYER--MTRG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 152 ~iAR~~a~~~~~-~~~P~K~yyig~VfR~e~--~~~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~ 217 (271)
+++|+++.+... .++|+|+||+|+|||+|. |+.| |.|||+|+|+|+||.+... ++.++|+.||+++
T Consensus 95 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~lgl~~ 174 (401)
T 1evl_A 95 GHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEK 174 (401)
T ss_dssp HHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999876443 478999999999999997 4889 9999999999999964311 5678999999965
No 19
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.93 E-value=2.6e-26 Score=229.72 Aligned_cols=144 Identities=19% Similarity=0.267 Sum_probs=130.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCC-CeEeeCCCCh
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGN-RRVALRPELT 150 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G-~~laLRPD~T 150 (271)
.+++|++||+|.+++++++|++.+++++.++||++|.||+|++.++|..+ |+. ..++||+|.|.+| +.++|||++|
T Consensus 258 ~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~s-G~~d~~~~~mf~~~d~~~~~~~~LrP~~~ 336 (645)
T 1nyr_A 258 LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTS-GHWDHYQEDMFPPMQLDETESMVLRPMNC 336 (645)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHH-THHHHCTTSSCCCEEETTTEEEEECSSSH
T ss_pred cCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhC-CCccccccCcceeEecCCCeEEEeCCCCC
Confidence 35899999999999999999999999999999999999999999999875 643 5789999999999 9999999999
Q ss_pred HHHHHHHHHcCCC-CCCCeEEEEEeceeecCCCC--CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCC
Q 024194 151 PSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIP 216 (271)
Q Consensus 151 ~~iAR~~a~~~~~-~~~P~K~yyig~VfR~e~~~--~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~ 216 (271)
++++|+++++... .++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++.. ++.++|+.||++
T Consensus 337 ~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~ 416 (645)
T 1nyr_A 337 PHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFE 416 (645)
T ss_dssp HHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999987653 47999999999999999876 67 9999999999999987643 677899999997
Q ss_pred cc
Q 024194 217 EH 218 (271)
Q Consensus 217 ~~ 218 (271)
+.
T Consensus 417 ~~ 418 (645)
T 1nyr_A 417 DY 418 (645)
T ss_dssp CE
T ss_pred eE
Confidence 53
No 20
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.93 E-value=6.5e-26 Score=219.76 Aligned_cols=148 Identities=17% Similarity=0.210 Sum_probs=126.7
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCC----CCe
Q 024194 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRG----NRR 142 (271)
Q Consensus 69 ~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~----G~~ 142 (271)
.++..+.++|++||+|.++.++++|++.++++|+++||++|.||+|++.++|.+.+|+ ...++||+|.|++ |+.
T Consensus 26 ~li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~ 105 (477)
T 1hc7_A 26 ELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEP 105 (477)
T ss_dssp TSEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEE
T ss_pred CCeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCe
Confidence 3456667899999999999999999999999999999999999999999999875564 2468999999987 899
Q ss_pred EeeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCCCCC--CCcceEEeEEEEEecCcHH----------HHHHH
Q 024194 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRG--RRREHYQWNMDIIGVPAVT----------VLQEV 209 (271)
Q Consensus 143 laLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~~~ 209 (271)
++|||+.|++++++++.... +.++|+|+||+|+|||+|.+.+| |.|||+|+|+|++|.+... ++.++
T Consensus 106 l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i 185 (477)
T 1hc7_A 106 LAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARL 185 (477)
T ss_dssp EEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 34799999999999999966669 9999999999999987654 36788
Q ss_pred H-HhCCCC
Q 024194 210 L-RCHSIP 216 (271)
Q Consensus 210 L-~~lGi~ 216 (271)
+ +.||++
T Consensus 186 ~~~~Lgl~ 193 (477)
T 1hc7_A 186 AREYAAIP 193 (477)
T ss_dssp HHHHHCCC
T ss_pred HHHhcCCe
Confidence 8 789996
No 21
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.90 E-value=1.4e-23 Score=209.95 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=127.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~ 151 (271)
+.++|++||+|.++++++.|++.+++++.++||++|.||+|++.++|.. +|+. ..++||+ .|.+|+.++|||+.|+
T Consensus 258 ~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~~~~~LrP~~~~ 335 (642)
T 1qf6_A 258 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMNCP 335 (642)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETTEEEEECSSSHH
T ss_pred cCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCCceEEecCCCCH
Confidence 4589999999999999999999999999999999999999999999987 4754 4688999 9999999999999999
Q ss_pred HHHHHHHHcCC-CCCCCeEEEEEeceeecCCC--CCC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCCc
Q 024194 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERM--TRG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIPE 217 (271)
Q Consensus 152 ~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~--~~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~~ 217 (271)
+++++++.+.. +.++|+|+||+|+|||+|.+ +.| |.|||+|.|+++||.+... ++..+|+.+|+++
T Consensus 336 ~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~~ 415 (642)
T 1qf6_A 336 GHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEK 415 (642)
T ss_dssp HHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCC
T ss_pred HHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999987643 34799999999999999976 788 9999999999999975421 5678999999965
No 22
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.89 E-value=2.9e-23 Score=202.24 Aligned_cols=147 Identities=27% Similarity=0.409 Sum_probs=129.3
Q ss_pred ccccc-CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCC----CC
Q 024194 69 QKIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NR 141 (271)
Q Consensus 69 ~~~~~-~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~----G~ 141 (271)
.+++. ..++|+.||+|.++++++.|++.+++++++ ||++|.||+|++.++|.+++|+. ..++||+|.|.+ |+
T Consensus 52 glid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~ 130 (501)
T 1nj1_A 52 EIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQR 130 (501)
T ss_dssp TCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEE
T ss_pred CCccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCC
Confidence 33455 567999999999999999999999999999 99999999999999998755642 468999999876 78
Q ss_pred eEeeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCC-CCC--CCcceE-EeEEEEEecCcHH----------HH
Q 024194 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHY-QWNMDIIGVPAVT----------VL 206 (271)
Q Consensus 142 ~laLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~-~~G--r~REf~-Q~gvEiiG~~~~~----------ll 206 (271)
.++|||+.|++++++++.... ..++|+|+||+|+|||+|.+ ++| |.|||+ |++++++|.+... ++
T Consensus 131 ~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~ 210 (501)
T 1nj1_A 131 KLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIY 210 (501)
T ss_dssp EEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHH
Confidence 999999999999999998754 44899999999999999988 889 999999 9999999876543 56
Q ss_pred HHHHHhCCCC
Q 024194 207 QEVLRCHSIP 216 (271)
Q Consensus 207 ~~~L~~lGi~ 216 (271)
.++|+.||++
T Consensus 211 ~~i~~~Lgl~ 220 (501)
T 1nj1_A 211 KEFFNSLGIP 220 (501)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHCCCe
Confidence 7889999997
No 23
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=99.89 E-value=7.7e-23 Score=197.39 Aligned_cols=142 Identities=22% Similarity=0.308 Sum_probs=123.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHH-HHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeC--CCCeEeeCCC
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--GNRRVALRPE 148 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf-~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~--~G~~laLRPD 148 (271)
+..+|++||+|.++.+++.|++.+++++ .++||++|.||+|++.++|... |+. ..++||+|.|. +|+.++|||+
T Consensus 51 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-Gh~~~~~~emy~~~d~~~~~~~l~LrPt 129 (460)
T 3uh0_A 51 PLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKS-GHWENYADDMFKVETTDEEKEEYGLKPM 129 (460)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHH-TCTTTSGGGSCEECC------CEEECSC
T ss_pred cCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhc-CCccccccceEEEecCCCCCceEEEccc
Confidence 3589999999999999999999999999 9999999999999999999864 653 46899999986 5899999999
Q ss_pred ChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCCC--CC--CCcceEEeEEEEEecCcHH---------HHHHHH-HhC
Q 024194 149 LTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVT---------VLQEVL-RCH 213 (271)
Q Consensus 149 ~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~--~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L-~~l 213 (271)
.|++++++++.... +.++|+|+||+|+|||+|.++ .| |.|||+|.|+++|+.++.. ++.+++ +.+
T Consensus 130 ~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~l 209 (460)
T 3uh0_A 130 NCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIF 209 (460)
T ss_dssp SHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999887643 357999999999999999875 88 9999999999999987521 567889 999
Q ss_pred CCC
Q 024194 214 SIP 216 (271)
Q Consensus 214 Gi~ 216 (271)
|++
T Consensus 210 Gl~ 212 (460)
T 3uh0_A 210 PFV 212 (460)
T ss_dssp CCC
T ss_pred CCC
Confidence 998
No 24
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.88 E-value=2e-22 Score=196.65 Aligned_cols=148 Identities=21% Similarity=0.291 Sum_probs=129.6
Q ss_pred ccccc-CCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCC----CC
Q 024194 69 QKIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NR 141 (271)
Q Consensus 69 ~~~~~-~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~----G~ 141 (271)
.++++ ..++|+.+|+|.++++++.|++.+++.+.++||++|.||+|++.++|.+.+|+. ..++||+|.|.+ |+
T Consensus 36 glid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~ 115 (518)
T 3ial_A 36 ELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEE 115 (518)
T ss_dssp TCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEE
T ss_pred CCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCc
Confidence 34565 688999999999999999999999999999999999999999999997544542 478999999975 68
Q ss_pred eEeeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHH
Q 024194 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQ 207 (271)
Q Consensus 142 ~laLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~ 207 (271)
.++|||+.|++++++++.... +.++|+|+||+|+|||+| +++.| |.|||+|.++++||.+... +..
T Consensus 116 ~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~ 195 (518)
T 3ial_A 116 RLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVID 195 (518)
T ss_dssp EEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 999999999999999987654 357999999999999999 78899 9999999999999865433 457
Q ss_pred HHH-HhCCCC
Q 024194 208 EVL-RCHSIP 216 (271)
Q Consensus 208 ~~L-~~lGi~ 216 (271)
+++ +.||++
T Consensus 196 ~i~~~~LGlp 205 (518)
T 3ial_A 196 TIFSDELCFK 205 (518)
T ss_dssp HHHTTTTCCC
T ss_pred HHHHHhcCCc
Confidence 889 899997
No 25
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=188.69 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=128.2
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCC----e
Q 024194 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNR----R 142 (271)
Q Consensus 69 ~~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~----~ 142 (271)
.++++...+|+.||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.+.+|+. ..++||.|.|.+++ .
T Consensus 43 ~lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~ 122 (519)
T 4hvc_A 43 EMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEP 122 (519)
T ss_dssp TCEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEE
T ss_pred CCeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccc
Confidence 34666678999999999999999999999999999999999999999999998645643 47899999997754 6
Q ss_pred EeeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH----------HHHH
Q 024194 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT----------VLQE 208 (271)
Q Consensus 143 laLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~----------ll~~ 208 (271)
++|||+.|++++++++.... +.++|+|+||+|+|||+| +++.| |.|||+|.++++++....+ +..+
T Consensus 123 l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~ 202 (519)
T 4hvc_A 123 IAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQ 202 (519)
T ss_dssp EEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654 357999999999999999 77889 9999999999998776543 5667
Q ss_pred HHHhC-CCC
Q 024194 209 VLRCH-SIP 216 (271)
Q Consensus 209 ~L~~l-Gi~ 216 (271)
+++.+ |++
T Consensus 203 i~~~ll~lp 211 (519)
T 4hvc_A 203 VYEELLAIP 211 (519)
T ss_dssp HHHTTSCCC
T ss_pred HHHHhcCCc
Confidence 88886 775
No 26
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.83 E-value=1.2e-20 Score=189.93 Aligned_cols=124 Identities=24% Similarity=0.325 Sum_probs=107.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc--cc---------cccEEEeeC----
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IR---------DQLYCFEDR---- 138 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~-~~Gy~eI~tP~~E~~d~~~~~~g~~--~~---------~~~y~f~D~---- 138 (271)
.++|++||+|.+++++++|++.|++.|. ..||.||.||++++.++|..+ |+. .. +++|++ |+
T Consensus 89 g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~S-GH~~~f~d~m~~~~~~~e~yr~-D~l~e~ 166 (693)
T 2zt5_A 89 GVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTS-GHVDKFADFMVKDVKNGECFRA-DHLLKA 166 (693)
T ss_dssp CCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHH-THHHHCEEEEEEBSSSCCEEEH-HHHHHH
T ss_pred CCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhc-CCcccccccceeeccCCceeec-cHhHHH
Confidence 3589999999999999999999999998 569999999999999999864 442 11 456665 33
Q ss_pred ---------------------------------------------------------------------CCCeEeeCCCC
Q 024194 139 ---------------------------------------------------------------------GNRRVALRPEL 149 (271)
Q Consensus 139 ---------------------------------------------------------------------~G~~laLRPD~ 149 (271)
+|+.+.||||+
T Consensus 167 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPEt 246 (693)
T 2zt5_A 167 HLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPET 246 (693)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSCS
T ss_pred HHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeecccc
Confidence 56899999999
Q ss_pred hHHH----HHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCc
Q 024194 150 TPSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (271)
Q Consensus 150 T~~i----AR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~ 202 (271)
|.++ +|.+..++ .++|+++||||++||+| +|+.| |.|||+|.++|+|+.++
T Consensus 247 aqg~f~~f~r~~~~~~--~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~ 304 (693)
T 2zt5_A 247 AQGIFLNFKRLLEFNQ--GKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPS 304 (693)
T ss_dssp HHHHHTTHHHHHHHTT--TCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTT
T ss_pred chHHHHHHHHHHHHhC--cCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcc
Confidence 9999 99887754 37999999999999999 99999 99999999999999643
No 27
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.81 E-value=4e-20 Score=176.81 Aligned_cols=137 Identities=23% Similarity=0.302 Sum_probs=119.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChHHH
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTPSL 153 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~--~~~~~~y~f~D~~G~~laLRPD~T~~i 153 (271)
.+|++||+|.++++++.|++.+++.+.++||++|.||+|++.++|... |+ ...++||++. ++.++|||+.|+++
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~---~~~l~LrPt~e~~i 236 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGT-GQLPKFEEDLYKCE---RDNLYLIPTAEVPL 236 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHH-SCTTTTGGGSCBCT---TTCCEECSSTHHHH
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhc-CCCCcChhhheEec---CCeEEEcCCCcHHH
Confidence 499999999999999999999999999999999999999999999764 64 2467899885 47899999999999
Q ss_pred HHHHHHcCC-CCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCC
Q 024194 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIP 216 (271)
Q Consensus 154 AR~~a~~~~-~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~ 216 (271)
+++++.... ..++|+|+||+|+|||+|.++ .| |.|||+|.++++|+.++.. ++.++|+.||++
T Consensus 237 ~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 237 TNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp HGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999987543 357899999999999999854 34 8999999999999987621 677899999997
No 28
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.81 E-value=1.1e-19 Score=177.25 Aligned_cols=141 Identities=19% Similarity=0.228 Sum_probs=116.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH--HcCCeeecCCcccchHHhhhhhccc--cccccEE---------------
Q 024194 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSR--LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYC--------------- 134 (271)
Q Consensus 74 ~~p~G~~d~lp~e~~~~~~i~~~l~~vf~--~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~--------------- 134 (271)
..++|+.||+|.++++++.|++.+++.+. ++||.||.||++++.++|..+ |+. ..+.||+
T Consensus 26 ~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~S-Gh~~~f~d~m~~~~~~~~~~r~d~l~~ 104 (505)
T 1ati_A 26 GGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYS-GHEATFADPMVDNRITKKRYRLDHLLK 104 (505)
T ss_dssp TCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHT-SHHHHCEEEEEEC--------------
T ss_pred CCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhc-CChhhcCccceeccccccccchhhhhh
Confidence 45789999999999999999999999999 999999999999999999864 432 1233333
Q ss_pred ----------------------E------e-----------------eCC-------------------------CCeEe
Q 024194 135 ----------------------F------E-----------------DRG-------------------------NRRVA 144 (271)
Q Consensus 135 ----------------------f------~-----------------D~~-------------------------G~~la 144 (271)
| . |.+ ++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~~ 184 (505)
T 1ati_A 105 EQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAY 184 (505)
T ss_dssp ------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEE
T ss_pred hhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCcccccccee
Confidence 3 1 222 46789
Q ss_pred eCCCChHHH----HHHHHHcCCCCCCCeEEEEEeceeecC-CCCCC--CCcceEEeEEEEEecCcHH---------HHHH
Q 024194 145 LRPELTPSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT---------VLQE 208 (271)
Q Consensus 145 LRPD~T~~i----AR~~a~~~~~~~~P~K~yyig~VfR~e-~~~~G--r~REf~Q~gvEiiG~~~~~---------ll~~ 208 (271)
|||+.|+++ +|.+.++.+ ++|+|+||+|+|||+| +|+.| |.|||+|.++++|+.++.. +...
T Consensus 185 LRPE~t~~i~~~~~~~~~sy~r--~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~ 262 (505)
T 1ati_A 185 LRPETAQGIFVNFKNVLDATSR--KLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLK 262 (505)
T ss_dssp ECSSSHHHHHHTHHHHHHHHTC--CSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHH
T ss_pred ecccchhHHHHHHHHHHHhcCC--CCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999 777766522 6999999999999999 88889 9999999999999987643 5678
Q ss_pred HHHhCCCCc
Q 024194 209 VLRCHSIPE 217 (271)
Q Consensus 209 ~L~~lGi~~ 217 (271)
+++.||++.
T Consensus 263 i~~~LGl~~ 271 (505)
T 1ati_A 263 WWQEMGLSR 271 (505)
T ss_dssp HHHHTTCCG
T ss_pred HHHHcCCCe
Confidence 899999986
No 29
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.78 E-value=8e-19 Score=167.59 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=120.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHH
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~i 153 (271)
.+|+.+|+|.++++++.|++.+++.+.++||++|.||.|++.++|... |+. ..++||++.| +.++|+|+.|+++
T Consensus 155 g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~d---~~l~L~Pt~e~~~ 230 (421)
T 1ses_A 155 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT-GHFPAYRDQVWAIAE---TDLYLTGTAEVVL 230 (421)
T ss_dssp CSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHH-TCTTTTGGGSCBBTT---SSEEECSSTHHHH
T ss_pred CCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhc-CCCCcCchhcEEEcC---CeEEEeecCcHHH
Confidence 479999999999999999999999999999999999999999999764 653 5788999864 6799999999999
Q ss_pred HHHHHHcCC-CCCCCeEEEEEeceeecC-----CCCCC--CCcceEEeEEEEEecC--c-HH--------HHHHHHHhCC
Q 024194 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYE-----RMTRG--RRREHYQWNMDIIGVP--A-VT--------VLQEVLRCHS 214 (271)
Q Consensus 154 AR~~a~~~~-~~~~P~K~yyig~VfR~e-----~~~~G--r~REf~Q~gvEiiG~~--~-~~--------ll~~~L~~lG 214 (271)
++++..... ..++|+|+|++|+|||+| +++.| |.|||+|.++..|..+ . .+ ++.++|+.||
T Consensus 231 ~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LG 310 (421)
T 1ses_A 231 NALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLE 310 (421)
T ss_dssp HHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999876432 347899999999999999 67889 9999999999999987 2 21 6778999999
Q ss_pred CCc
Q 024194 215 IPE 217 (271)
Q Consensus 215 i~~ 217 (271)
++-
T Consensus 311 L~~ 313 (421)
T 1ses_A 311 LPY 313 (421)
T ss_dssp CCE
T ss_pred Cce
Confidence 973
No 30
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.75 E-value=3.8e-18 Score=164.31 Aligned_cols=138 Identities=21% Similarity=0.177 Sum_probs=120.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
...|+.+|+|.++++++.|++.+++.+.++||++|.||.|++.++|... |+. ..++||++.| +.++|||+.|++
T Consensus 181 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~d---~~l~LrPt~e~~ 256 (455)
T 2dq0_A 181 SGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGS-TSFEDFEDVIYKVED---EDLYLIPTAEHP 256 (455)
T ss_dssp TCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTT-SCTTHHHHTCCBBTT---SSCEECSSTHHH
T ss_pred cCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhc-CCCCCChHhhCeecC---CcEEEcCcCcHH
Confidence 4579999999999999999999999999999999999999999999865 653 4678999864 679999999999
Q ss_pred HHHHHHHcCC-CCCCCeEEEEEeceeecCCCCCC-------CCcceEEeEEEEEecCcHH---------HHHHHHHhCCC
Q 024194 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRG-------RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSI 215 (271)
Q Consensus 153 iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~~G-------r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi 215 (271)
++++++.... ..++|+|+|++|+|||+|.++.| |.|||+|.++.+|+.+... ++.++|+.||+
T Consensus 257 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL 336 (455)
T 2dq0_A 257 LAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEI 336 (455)
T ss_dssp HHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999886543 45799999999999999987655 8999999999999877421 67789999999
Q ss_pred C
Q 024194 216 P 216 (271)
Q Consensus 216 ~ 216 (271)
+
T Consensus 337 ~ 337 (455)
T 2dq0_A 337 P 337 (455)
T ss_dssp C
T ss_pred c
Confidence 7
No 31
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.74 E-value=7e-18 Score=153.69 Aligned_cols=128 Identities=21% Similarity=0.261 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCe
Q 024194 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (271)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~P~ 168 (271)
..+.+++.++++|..+||.||.||.|+..++|... |.....++|++.++.++.++|||++++++++.+..+....+.|+
T Consensus 72 ~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~-g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Pl 150 (288)
T 3dsq_A 72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAKM-TIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPI 150 (288)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTT-SSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhc-CCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCE
Confidence 35889999999999999999999999999988753 43222256665554446689999999999987766544467899
Q ss_pred EEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-------HHHHHHHhCCCCc
Q 024194 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-------VLQEVLRCHSIPE 217 (271)
Q Consensus 169 K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-------ll~~~L~~lGi~~ 217 (271)
|+|++|+|||++.++.+|.+||+|++++++|.++.. ++..+|+.+|+++
T Consensus 151 rlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~~ 206 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIRE 206 (288)
T ss_dssp EEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCCC
Confidence 999999999999988899999999999999985421 7889999999964
No 32
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.71 E-value=2.1e-17 Score=161.16 Aligned_cols=144 Identities=18% Similarity=0.251 Sum_probs=120.3
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHH-HHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEe-----e-----
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQE-VSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFE-----D----- 137 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~-vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~-----D----- 137 (271)
+..-..+|+.||+|.++++++.|++.+++ ++.++||++|.||+|++.++|... |.. ..++||++. |
T Consensus 215 i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~S-Gh~~~F~demy~v~~~~~Rd~~~~e 293 (522)
T 2cja_A 215 LKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKS-GHAKGVYPEIYYVCPPQTRDPDYWE 293 (522)
T ss_dssp EEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHH-TGGGTCGGGCCEEECBSCCCHHHHH
T ss_pred eeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhc-CCcCccccceeeeecCCccchhhhh
Confidence 33347899999999999999999999996 589999999999999999999874 643 468899995 3
Q ss_pred --------------------CCCCeEeeCCCChHHHHHHHHHcC-CCCCCCeEEEE-EeceeecCCCC--C--CCCcceE
Q 024194 138 --------------------RGNRRVALRPELTPSLARLVIQKG-KSVSLPLKWFA-VGQCWRYERMT--R--GRRREHY 191 (271)
Q Consensus 138 --------------------~~G~~laLRPD~T~~iAR~~a~~~-~~~~~P~K~yy-ig~VfR~e~~~--~--Gr~REf~ 191 (271)
.+++.++|||+.|+++++++.... ...++|+|+|+ +|+|||+| ++ . +|.|||+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~ 372 (522)
T 2cja_A 294 EVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFH 372 (522)
T ss_dssp HHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEE
T ss_pred hhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEE
Confidence 147899999999999999887542 23568999999 99999999 76 5 4999999
Q ss_pred EeEEEEEecCcHH------HH----HHHHHhCCCC
Q 024194 192 QWNMDIIGVPAVT------VL----QEVLRCHSIP 216 (271)
Q Consensus 192 Q~gvEiiG~~~~~------ll----~~~L~~lGi~ 216 (271)
|.++++||.++.. ++ ..+++.||++
T Consensus 373 q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp 407 (522)
T 2cja_A 373 RIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE 407 (522)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred EeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999976533 23 4567899998
No 33
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.67 E-value=7.2e-16 Score=140.17 Aligned_cols=123 Identities=22% Similarity=0.340 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhh---ccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 024194 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA---GEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (271)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~---g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~ 166 (271)
+.++.+.++++|..+||.||.||+|+..+.+.... ++.+.+++|.| ++..+|||++++++.+.++.+......
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~----~~~~~LR~slsp~L~~~l~~n~~~~~~ 154 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV----DKNFCLRPMLTPNLYNYLRKLDRALPD 154 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE----TTTEEECSCSHHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee----CCCeeEcccChHHHHHHHHHhhccCCC
Confidence 67899999999999999999999999998775421 11234557766 257999999999999999886555678
Q ss_pred CeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH-----HHHHHHHhCCCC
Q 024194 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT-----VLQEVLRCHSIP 216 (271)
Q Consensus 167 P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~-----ll~~~L~~lGi~ 216 (271)
|.|+|++|+|||++..+.++.+||+|++++++|.+... ++..+|+.+|++
T Consensus 155 p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~lGl~ 209 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGID 209 (290)
T ss_dssp SEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999877789999999999999976432 788999999984
No 34
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.60 E-value=4.6e-15 Score=144.34 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=117.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeC--------CCCeEee
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--------GNRRVAL 145 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~--------~G~~laL 145 (271)
.+|+..|.|.++++.+.|++.+++.+.++||++|.||.|...++|.. +|.. ..++||++.|. .++.++|
T Consensus 190 Gsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~-sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQE-VAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp STTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HSCCC-CCSCCCEEC------------CCEEE
T ss_pred CcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhh-cCCcccCcccceEeecCCccccccccCcceeE
Confidence 47999999999999999999999999999999999999999999975 4643 46889999875 3678999
Q ss_pred CCCChHHHHHHHHHcC-CCCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcH---H--------HH
Q 024194 146 RPELTPSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV---T--------VL 206 (271)
Q Consensus 146 RPD~T~~iAR~~a~~~-~~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~---~--------ll 206 (271)
+|..+++++.++.... .+.++|+|+|++++|||+|... .| |.|||+|.++.+|..+.. + +.
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHH
Confidence 9999999998876542 3568999999999999999753 34 789999999999988753 2 56
Q ss_pred HHHHHhCCCC
Q 024194 207 QEVLRCHSIP 216 (271)
Q Consensus 207 ~~~L~~lGi~ 216 (271)
.++|+.||++
T Consensus 349 e~il~~LGLp 358 (522)
T 3vbb_A 349 EEFYQSLGIP 358 (522)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCc
Confidence 7899999997
No 35
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.59 E-value=4.8e-15 Score=144.03 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=120.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--ccc-ccEEEeeCCCCeEeeCCCChHH
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRD-QLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~-~~y~f~D~~G~~laLRPD~T~~ 152 (271)
..|+..|+|.++++.+.|++.+++.+.++||++|.||.|...++|... |.. ..+ +||++.|.+++.++|+|..+++
T Consensus 208 G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~s-G~~~~f~e~emf~v~~~~~~~l~L~PTaE~~ 286 (501)
T 1wle_A 208 GHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGC-GMTPNAKPSQIYNIDPSRFEDLNLAGTAEVG 286 (501)
T ss_dssp CTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHH-TCCSSSSSCSSCBBCTTTSSSCEECSSHHHH
T ss_pred cCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhh-cCCCccCccccEEEecCCCCeEEECCcCcHH
Confidence 378999999999999999999999999999999999999999999764 543 245 8999988777899999999999
Q ss_pred HHHHHHHcCC-CCCCCeEEEEEeceeecCCC----CCC--CCcceEEeEEEEEecCc--H-H--------HHHHHHHhCC
Q 024194 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERM----TRG--RRREHYQWNMDIIGVPA--V-T--------VLQEVLRCHS 214 (271)
Q Consensus 153 iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~----~~G--r~REf~Q~gvEiiG~~~--~-~--------ll~~~L~~lG 214 (271)
++.++..... +.++|+|+|++++|||+|.. ..| |.|||.|.++.+|..+. . + +..++|+.||
T Consensus 287 ~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~Lg 366 (501)
T 1wle_A 287 LAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELG 366 (501)
T ss_dssp HHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9998875432 45799999999999999954 455 78999999999999984 1 1 6778999999
Q ss_pred CC
Q 024194 215 IP 216 (271)
Q Consensus 215 i~ 216 (271)
++
T Consensus 367 Lp 368 (501)
T 1wle_A 367 LH 368 (501)
T ss_dssp CC
T ss_pred Cc
Confidence 97
No 36
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.53 E-value=4.9e-14 Score=136.17 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=119.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
...|+..|.|.++++.+.|.+.+++.+.++||+||.||.+...++|... |.. ..++||++.|. ++.++|+|...++
T Consensus 196 sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~s-G~~~~f~e~mf~v~~~-~~~~~L~PTaE~~ 273 (484)
T 3lss_A 196 AGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEV-AQLSQFDEELYQVSGD-GDKKYLIATSEMP 273 (484)
T ss_dssp HCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHH-SCHHHHHHTCCEEESS-SSCEEECSSTHHH
T ss_pred CCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhc-CCcccccccceEeecC-CcceEEeccCcHH
Confidence 4578899999999999999999999999999999999999999999753 643 35789999764 7789999999999
Q ss_pred HHHHHHHcC-CCCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcH--H---------HHHHHHHhC
Q 024194 153 LARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV--T---------VLQEVLRCH 213 (271)
Q Consensus 153 iAR~~a~~~-~~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~--~---------ll~~~L~~l 213 (271)
++-++.... .+.++|+|+|.+++|||+|... .| |.|||+|.++.+|..+.. . ...++|+.|
T Consensus 274 l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~L 353 (484)
T 3lss_A 274 IAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSL 353 (484)
T ss_dssp HHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 988766432 3568999999999999999632 44 789999999999998764 2 567899999
Q ss_pred CCC
Q 024194 214 SIP 216 (271)
Q Consensus 214 Gi~ 216 (271)
|++
T Consensus 354 GLp 356 (484)
T 3lss_A 354 GLP 356 (484)
T ss_dssp TCC
T ss_pred CCc
Confidence 997
No 37
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.51 E-value=7.3e-14 Score=134.91 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=118.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 024194 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (271)
Q Consensus 75 ~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~ 152 (271)
...|+..|.|.++++++.+.+.+++.+.++||++|.||.|...++|... |.. ..++||++.|. ++.+.|+|.+..|
T Consensus 173 sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~s-G~l~~f~eemf~v~~~-~~~~~LipTaE~p 250 (485)
T 3qne_A 173 VGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKT-AQLSQFDEELYKVIDG-EDEKYLIATSEQP 250 (485)
T ss_dssp HCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHH-SCHHHHTTTCCEEEET-TEEEEECSSTHHH
T ss_pred ccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-CCccccccceEEEeCC-CCeEEEeccccHH
Confidence 3569999999999999999999999999999999999999999999764 543 46789999875 6789999999999
Q ss_pred HHHHHHHcC-C--CCCCCeEEEEEeceeecCCCC-----CC--CCcceEEeEEEEEecCcHH---------HHHHHHHhC
Q 024194 153 LARLVIQKG-K--SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCH 213 (271)
Q Consensus 153 iAR~~a~~~-~--~~~~P~K~yyig~VfR~e~~~-----~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~l 213 (271)
++.++.... . +.++|+|+|++++|||+|... .| |.|||+|.++.+|..+... +..++|+.|
T Consensus 251 l~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~L 330 (485)
T 3qne_A 251 ISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSL 330 (485)
T ss_dssp HHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHC
Confidence 999876532 2 357999999999999999643 45 7899999999999876422 567899999
Q ss_pred CCC
Q 024194 214 SIP 216 (271)
Q Consensus 214 Gi~ 216 (271)
|++
T Consensus 331 gLp 333 (485)
T 3qne_A 331 GLP 333 (485)
T ss_dssp TCC
T ss_pred CCc
Confidence 997
No 38
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.51 E-value=9.7e-14 Score=135.94 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=117.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHH
Q 024194 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (271)
Q Consensus 76 p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~G~~laLRPD~T~~i 153 (271)
..|+..|+|.++++.+.+.+.+++.+.++||+||.||.+-..++|.. +|.. ..++||++.| +.++|+|...+++
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~-sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~ 339 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVVL 339 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGCCEETT---TTEEECSSTHHHH
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHh-cCCcccChhhceEecC---CCEEEccCCcHHH
Confidence 57999999999999999999999999999999999999999999976 3653 4588999865 6799999999999
Q ss_pred HHHHHHcC-CCCCCCeEEEEEeceeecCCC-----CCC--CCcceEEeEEEEEecCc--HH---------HHHHHHHhCC
Q 024194 154 ARLVIQKG-KSVSLPLKWFAVGQCWRYERM-----TRG--RRREHYQWNMDIIGVPA--VT---------VLQEVLRCHS 214 (271)
Q Consensus 154 AR~~a~~~-~~~~~P~K~yyig~VfR~e~~-----~~G--r~REf~Q~gvEiiG~~~--~~---------ll~~~L~~lG 214 (271)
+-++.... .+.++|+|+|.+|+|||+|.. ..| |.|||+|.++.+|..+. .. +..++|+.||
T Consensus 340 ~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~Lg 419 (536)
T 3err_A 340 NALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLE 419 (536)
T ss_dssp HHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 88766432 245799999999999999962 345 78999999999999887 22 5678999999
Q ss_pred CC
Q 024194 215 IP 216 (271)
Q Consensus 215 i~ 216 (271)
++
T Consensus 420 Lp 421 (536)
T 3err_A 420 LP 421 (536)
T ss_dssp CC
T ss_pred Cc
Confidence 97
No 39
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.43 E-value=6.4e-13 Score=121.16 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccch-HHhhhh-hccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHc
Q 024194 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRK-AGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQK 160 (271)
Q Consensus 83 lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~-d~~~~~-~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~ 160 (271)
.....+.+.++.+.++++|.++||.||+||+++.. +++..+ .|+. .++|.+. -.|+.+.||..-...+-+.++.
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~-~~~~~~~L~~Spe~~~~~l~~~- 86 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVE-IYGVKMRLTHSMILHKQLAIAM- 86 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEE-ETTEEEEECSCSHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEE-cCCCCEEeccChHHHHHHHhhc-
Confidence 56778999999999999999999999999999998 877765 4443 5677753 2456788874443333333322
Q ss_pred CCCCCCCeEEEEEeceeecCCCCC--CCCc-ceEEeEEEEEecCcHH
Q 024194 161 GKSVSLPLKWFAVGQCWRYERMTR--GRRR-EHYQWNMDIIGVPAVT 204 (271)
Q Consensus 161 ~~~~~~P~K~yyig~VfR~e~~~~--Gr~R-Ef~Q~gvEiiG~~~~~ 204 (271)
.+.|+||+|+|||+|+||. +|.+ ||+|+++|+.|.+..+
T Consensus 87 -----g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~ 128 (294)
T 1nnh_A 87 -----GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMED 128 (294)
T ss_dssp -----TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHH
T ss_pred -----CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHH
Confidence 2679999999999999764 6776 9999999999987554
No 40
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.29 E-value=1e-11 Score=118.90 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHcCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLR--PD~T~~iAR~~a~~~~ 162 (271)
...+.+..+.+.+++.|.++||.||+||+++... ++ -..++|.+ |..|+.+.|| |+++... ++ .
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~------~e-~~~~~f~~-~~~~~~~~Lr~Spel~~~~--~~-~--- 198 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTGA------VE-GGATLFKL-KYFDKYAYLSQSAQLYLEA--AI-F--- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC------SS-CGGGCCEE-EETTEEEEECSCSHHHHHH--HH-H---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeec------CC-CCceeEEE-eecCCcEEeccChHHHHHH--Hh-c---
Confidence 4557888999999999999999999999999541 11 23467776 4678899999 8877554 22 2
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCc-ceEEeEEEEEecCcHH
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVT 204 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~R-Ef~Q~gvEiiG~~~~~ 204 (271)
.+.|+||+|+|||+|+++.+|.+ ||+|+++|+.|.+..+
T Consensus 199 ---g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~d 238 (434)
T 1x54_A 199 ---GLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWD 238 (434)
T ss_dssp ---HHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHH
T ss_pred ---CccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHH
Confidence 16799999999999998888776 9999999999987544
No 41
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.25 E-value=2.3e-11 Score=116.25 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHcCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLR--PD~T~~iAR~~a~~~~~ 163 (271)
-.+.+..+.+.+++.|..+||.||+||+++... + +-..++|.+ +..|+.+.|| |+++ .-+ ++..
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~------~-e~~~~~f~~-~~~~~~~~L~~Spql~--~~~-~~~g--- 198 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIASA------T-EGGAQLFPV-IYFGKEAFLAQSPQLY--KEL-MAGV--- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------S-STTCCCCEE-EETTEEEEECSCCHHH--HHH-HHHH---
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeC------C-CCCceeEEE-ecCCceEEecCCcHHH--HHH-HHhC---
Confidence 457788999999999999999999999999641 1 123567877 4568889999 7766 344 3332
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCc-ceEEeEEEEEecCcHH
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVT 204 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~R-Ef~Q~gvEiiG~~~~~ 204 (271)
+.|+|++|+|||+|+++.+|.+ ||+|+++|+.|.+..+
T Consensus 199 ---~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~d 237 (429)
T 1wyd_A 199 ---VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYND 237 (429)
T ss_dssp ---HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHH
T ss_pred ---cCceEEEcccccccCCccccccceeeEeeeeecCCCHHH
Confidence 5699999999999998887766 9999999999987544
No 42
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.25 E-value=2e-12 Score=124.38 Aligned_cols=143 Identities=19% Similarity=0.131 Sum_probs=99.8
Q ss_pred CCC-CCChHHHHHHHHHHHHHHHHH--HHcCCeeecCCcccchHHhhhh-hcc-----cccc----------ccEEEe-e
Q 024194 78 GTR-DFPPEDMRLRNWLFHNFQEVS--RLFGFEEVDFPVLESEALFIRK-AGE-----EIRD----------QLYCFE-D 137 (271)
Q Consensus 78 G~~-d~lp~e~~~~~~i~~~l~~vf--~~~Gy~eI~tP~~E~~d~~~~~-~g~-----~~~~----------~~y~f~-D 137 (271)
|+. ||+|.++.+++.|++.+++.+ .+.||.+|.||++.+.++|... .|. .+.+ +|+.++ +
T Consensus 52 G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~ 131 (454)
T 1g5h_A 52 GCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLEN 131 (454)
T ss_dssp CCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHH
T ss_pred cceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 767 999999999999999888774 6899999999999888766431 122 1111 133221 1
Q ss_pred CCCCeEeeCCCChHHHHHHHHHcC--CCCCCCeEEEEEeceee---cC-CCCCC--CCcceEEeEEEEEecCcHH-----
Q 024194 138 RGNRRVALRPELTPSLARLVIQKG--KSVSLPLKWFAVGQCWR---YE-RMTRG--RRREHYQWNMDIIGVPAVT----- 204 (271)
Q Consensus 138 ~~G~~laLRPD~T~~iAR~~a~~~--~~~~~P~K~yyig~VfR---~e-~~~~G--r~REf~Q~gvEiiG~~~~~----- 204 (271)
..++.++|||+..+.+........ ...++|++++++|+||| +| .+..| |.|||+|.++++|..++..
T Consensus 132 ~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~ 211 (454)
T 1g5h_A 132 LLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLD 211 (454)
T ss_dssp HHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHH
T ss_pred hcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhhHHHHHH
Confidence 124578999988877776655432 12379999999999999 57 45555 8899999999999865432
Q ss_pred ----HHHHHHHhCCCCccch
Q 024194 205 ----VLQEVLRCHSIPEHLF 220 (271)
Q Consensus 205 ----ll~~~L~~lGi~~~~~ 220 (271)
....+++.+|++...+
T Consensus 212 ~~~~~~~~~~~~lgi~~~~~ 231 (454)
T 1g5h_A 212 FWLRHRLLWWRKFAMSPSNF 231 (454)
T ss_dssp HHHHHHHHHHHTTCSSGGGE
T ss_pred HHHHHHHHHHHHcCCCceeE
Confidence 4567889999986443
No 43
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.20 E-value=1.8e-11 Score=116.82 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHcCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLR--PD~T~~iAR~~a~~~~ 162 (271)
.-.+.+.++.+.+++.|..+||.||+||+++.... + -..++|.+ |..|+.+.|| |+++.. .++..
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~-----e--~~~~~f~~-~~~g~~~~L~~Spel~~~---~l~~g-- 189 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA-----E--GGSGLFGV-DYFEKRAYLAQSPQLYKQ---IMVGV-- 189 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHHHH---HHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCC-----C--CCceeEEE-eeCCCcEEeeeCHHHHHH---HHhhC--
Confidence 45588999999999999999999999999996521 1 12457776 4567889999 777743 33321
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCc-ceEEeEEEEEecCcH
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAV 203 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~R-Ef~Q~gvEiiG~~~~ 203 (271)
..|+||+|+|||+|+++.+|.+ ||+|+++|+.|.++.
T Consensus 190 ----~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~ 227 (422)
T 1n9w_A 190 ----FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADE 227 (422)
T ss_dssp ----HSEEEEEEEC-------------CCEEEEEEEESCSSH
T ss_pred ----CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCH
Confidence 3599999999999998888776 999999999998443
No 44
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.09 E-value=6.9e-10 Score=102.72 Aligned_cols=137 Identities=18% Similarity=0.192 Sum_probs=112.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCC---------------
Q 024194 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG--------------- 139 (271)
Q Consensus 77 ~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~--~~~~~y~f~D~~--------------- 139 (271)
+|+.-+-+..+++++.|++.+++ ...+||++|.+|.+-..++|... |.. ..++||....-.
T Consensus 54 ~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~S-Ghl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~ 131 (346)
T 3mf2_A 54 DGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKS-GYLKSFPNLLGCVCGLHGTEREINAAVSRFDA 131 (346)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHT-THHHHCGGGCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhc-CCcccChhhcceeecccccchhhhhhhhhhcc
Confidence 57888889999999999999999 88999999999999999999753 543 467899874322
Q ss_pred ---------CCeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCC--CCcceEEeEEEEEecCcHH----
Q 024194 140 ---------NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG--RRREHYQWNMDIIGVPAVT---- 204 (271)
Q Consensus 140 ---------G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~G--r~REf~Q~gvEiiG~~~~~---- 204 (271)
+..++|.|...+++.-++.....-...|+|+.-.|+|||+|.. .| |.++|+|..+-+|+.++..
T Consensus 132 ~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS-~GL~RvhqF~kvE~v~~~tpEqs~~e~ 210 (346)
T 3mf2_A 132 GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPS-KHLDRLQSFRMREYVCIGTPDDVSDFR 210 (346)
T ss_dssp TSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCC-SSTTSCSEEEEEEEEEEESHHHHHHHH
T ss_pred ccccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCC-CCCeeeeeeEEEEEEEEeCHHHHHHHH
Confidence 3479999999999999988531122459999999999999974 35 8999999999999976532
Q ss_pred -----HHHHHHHhCCCC
Q 024194 205 -----VLQEVLRCHSIP 216 (271)
Q Consensus 205 -----ll~~~L~~lGi~ 216 (271)
.+.++|+.||++
T Consensus 211 e~l~~~ae~il~~LgLp 227 (346)
T 3mf2_A 211 ERWMVRAQAIARDLGLT 227 (346)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 677899999997
No 45
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.07 E-value=8.5e-10 Score=106.99 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHcCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLR--PD~T~~iAR~~a~~~~~ 163 (271)
-.+.+..|.+.+++.|..+||.||+||+++..+. +. ..++|.+. ..|+.+.|| |++-. -++++.
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~-----~~--ga~~f~~~-~~~~~~~L~~Spql~~--k~l~~~---- 242 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAPS-----EG--GSSVFEVT-YFKGKAYLAQSPQFNK--QQLIVA---- 242 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS-----SS--SSCCCEEE-ETTEEEEECSCTHHHH--HHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecC-----CC--Ccccceec-cCCccEEcccChHHHH--HHHHhc----
Confidence 4578889999999999999999999999997541 21 23578775 468899999 77744 233333
Q ss_pred CCCCeEEEEEeceeecCCCCCCCCc-ceEEeEEEE-EecCc
Q 024194 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDI-IGVPA 202 (271)
Q Consensus 164 ~~~P~K~yyig~VfR~e~~~~Gr~R-Ef~Q~gvEi-iG~~~ 202 (271)
.+-|+||||+|||+|+++.+|.+ ||+|+++|+ ||.+.
T Consensus 243 --g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~ 281 (487)
T 1eov_A 243 --DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHY 281 (487)
T ss_dssp --TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCT
T ss_pred --CCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCH
Confidence 25699999999999998888877 999999998 77653
No 46
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.03 E-value=4.5e-10 Score=107.92 Aligned_cols=129 Identities=16% Similarity=0.112 Sum_probs=91.4
Q ss_pred CCCC-CCChHHHHHHHHHHHHHHHHHHH-cC-CeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHH
Q 024194 77 KGTR-DFPPEDMRLRNWLFHNFQEVSRL-FG-FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSL 153 (271)
Q Consensus 77 ~G~~-d~lp~e~~~~~~i~~~l~~vf~~-~G-y~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~i 153 (271)
.|.. ||+|.++.+++.|++.++..+.. .| +.+|+||+.+ +|.. +|+. .-|+ ++|||+..+.+
T Consensus 93 ~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~---~~~~-SGH~---d~~~--------~~LRPeTaqg~ 157 (459)
T 3ikl_A 93 SGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHK---PGPL-LPGD---SAFR--------GGLRENLLHGA 157 (459)
T ss_dssp TTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBC---CSCC-CSSC---SCCT--------TB-CSCSHHHH
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccccc---cccc-Ccch---hhhc--------ceECCCCChhH
Confidence 3444 99999999999999966666654 66 6669999944 3433 4653 1222 99999988887
Q ss_pred HHHHHHcCC--CCCCCeEEEEEeceeecCC----CCCC--CCcceEEeEEEEEecCcHH---------HHHHHHHhCCCC
Q 024194 154 ARLVIQKGK--SVSLPLKWFAVGQCWRYER----MTRG--RRREHYQWNMDIIGVPAVT---------VLQEVLRCHSIP 216 (271)
Q Consensus 154 AR~~a~~~~--~~~~P~K~yyig~VfR~e~----~~~G--r~REf~Q~gvEiiG~~~~~---------ll~~~L~~lGi~ 216 (271)
.-.+.+... ..++|++++++|+|||+|. +..| |.|||+|..+++|-.++.. ....+++.+|++
T Consensus 158 ~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~ 237 (459)
T 3ikl_A 158 LEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMS 237 (459)
T ss_dssp HHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 655433321 2379999999999999993 4455 7899999999999887643 455778999998
Q ss_pred ccch
Q 024194 217 EHLF 220 (271)
Q Consensus 217 ~~~~ 220 (271)
...+
T Consensus 238 ~~~~ 241 (459)
T 3ikl_A 238 PSNF 241 (459)
T ss_dssp GGGE
T ss_pred hhhE
Confidence 5443
No 47
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.00 E-value=3.1e-09 Score=103.12 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCeeecC-CcccchH-Hhhhh-hccc-c---ccccEEEeeC------------------
Q 024194 84 PEDMRLRNWLFHNFQEVSRLFGFEEVDF-PVLESEA-LFIRK-AGEE-I---RDQLYCFEDR------------------ 138 (271)
Q Consensus 84 p~e~~~~~~i~~~l~~vf~~~Gy~eI~t-P~~E~~d-~~~~~-~g~~-~---~~~~y~f~D~------------------ 138 (271)
+........+.+.++++|...||.|+.+ |.+|+.. .|..- ...+ . ....|.+.++
T Consensus 221 ~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~H 300 (508)
T 3l4g_A 221 SGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTH 300 (508)
T ss_dssp CCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhh
Confidence 3455678889999999999999999875 8777643 22211 0111 1 1223555443
Q ss_pred -----------------CCCeEeeCCCChHHHHHHHHHcCC-CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEec
Q 024194 139 -----------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (271)
Q Consensus 139 -----------------~G~~laLRPD~T~~iAR~~a~~~~-~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~ 200 (271)
.++..+||+.+|+..+|.+..+.. ....|+|+|++|+|||++.....+..+|+|++.-++|.
T Consensus 301 e~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~ 380 (508)
T 3l4g_A 301 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADH 380 (508)
T ss_dssp HTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEE
T ss_pred hccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECC
Confidence 125799999999999999987543 24579999999999999988888999999999999886
Q ss_pred Cc-HH----HHHHHHHhCCCCc
Q 024194 201 PA-VT----VLQEVLRCHSIPE 217 (271)
Q Consensus 201 ~~-~~----ll~~~L~~lGi~~ 217 (271)
+- .. ++..+++.+|+.+
T Consensus 381 ~v~f~dLKg~Le~~l~~lG~~~ 402 (508)
T 3l4g_A 381 GLTLGHLMGVLREFFTKLGITQ 402 (508)
T ss_dssp SCCHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCcc
Confidence 52 22 7889999999854
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.99 E-value=3.1e-09 Score=103.14 Aligned_cols=104 Identities=15% Similarity=0.243 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHH--HHHHHcCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLA--RLVIQKGK 162 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iA--R~~a~~~~ 162 (271)
-.+.+..|...+++.|..+||.||+||++.... .|. ..++|.+. |..|+.+.|| ..+++. ++++.
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~Ga--~a~~F~~~~~~~~~~~yLr--~SpqLylk~l~v~--- 240 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GGA--AARPFITHHNALDMTLYMR--IAIELHLKRLIVG--- 240 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SSCCCEEEETTTTEEEEEC--SCSHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CCC--cccceEecccCCCceeEEe--cCHHHHHHHHhhc---
Confidence 446788899999999999999999999998541 122 23678775 6678899999 334433 22332
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
..-|+|+||+|||+|..+..|..||||+++|..+.+-.+
T Consensus 241 ---G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~d 279 (493)
T 3a74_A 241 ---GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRD 279 (493)
T ss_dssp ---TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHH
T ss_pred ---ccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHH
Confidence 246999999999999888889999999999999987544
No 49
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.87 E-value=5.6e-09 Score=101.84 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=63.5
Q ss_pred eEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCC-CCCCCcceEEeEEEEEecCc-HH----HHHHHHHhCCC
Q 024194 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPA-VT----VLQEVLRCHSI 215 (271)
Q Consensus 142 ~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~-~~Gr~REf~Q~gvEiiG~~~-~~----ll~~~L~~lGi 215 (271)
..+||+.+++++...+..+......|+|+|++|+|||++.+ +.++.+||+|+++.+.|.+. .. ++..+|+.+|+
T Consensus 180 ~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~LGi 259 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGF 259 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGGTC
T ss_pred ccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 58999999998888877665555789999999999998766 66788999999999999743 22 78889999998
Q ss_pred Cc
Q 024194 216 PE 217 (271)
Q Consensus 216 ~~ 217 (271)
.+
T Consensus 260 ~~ 261 (534)
T 2du3_A 260 EN 261 (534)
T ss_dssp CE
T ss_pred Ce
Confidence 53
No 50
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.84 E-value=2.7e-08 Score=96.80 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+++.|..+||.||+||++... ..|. ..+.|.+. +..|..+.||----.-.=++++..
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~-----~~Ga--~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G---- 250 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGGA--SARPFITHHNALDLDMYLRIAPELYLKRLVVGG---- 250 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESS-----CCSS--CCCCCEEEETTTTEEEEECSCSHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEec-----CCCC--cccceEeccCCCCceEEeccCHHHHHHHHhhcC----
Confidence 34677889999999999999999999999843 1121 23567664 456888999933222333334332
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
.-|+|+||+|||+|.....|..||||+++|..+.+-.+
T Consensus 251 --~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d 288 (504)
T 1e1o_A 251 --FERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHD 288 (504)
T ss_dssp --CCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHH
T ss_pred --CCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHH
Confidence 35999999999999888889999999999999986544
No 51
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.83 E-value=3.4e-08 Score=91.98 Aligned_cols=140 Identities=19% Similarity=0.275 Sum_probs=98.9
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhh-hcccc----ccccEEEeeCCC----
Q 024194 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK-AGEEI----RDQLYCFEDRGN---- 140 (271)
Q Consensus 71 ~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d-~~~~~-~g~~~----~~~~y~f~D~~G---- 140 (271)
++..+|.... .+........+.+.++++|...||.|+.+|.++... .|..- ..... ....|.+.++..
T Consensus 86 i~~tlP~~~~--~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~ 163 (350)
T 1b7y_A 86 VDVSLPGASL--FSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEG 163 (350)
T ss_dssp CCTTSCCCCC--CCCBCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBC
T ss_pred CCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccc
Confidence 5555663222 222334577888999999999999999999998743 23221 11100 134566665432
Q ss_pred -------CeEeeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCc-HH----HHHH
Q 024194 141 -------RRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA-VT----VLQE 208 (271)
Q Consensus 141 -------~~laLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~-~~----ll~~ 208 (271)
+..+||+.+++..+|.++.+ ..|+|+|.+|+|||++.....+..||+|+..-++|.+. .. ++..
T Consensus 164 ~~~~~~~~~~vLRt~tsp~llr~l~~~----~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ 239 (350)
T 1b7y_A 164 PLGEEVEGRLLLRTHTSPMQVRYMVAH----TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYE 239 (350)
T ss_dssp TTSCBCCSCEEECSSSTHHHHHHHHHC----CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHH
T ss_pred cccccccccceeeccchHHHHHHHHhc----CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHH
Confidence 77899999999999998873 36999999999999875334467899999999999742 22 7788
Q ss_pred HHHhC-CCC
Q 024194 209 VLRCH-SIP 216 (271)
Q Consensus 209 ~L~~l-Gi~ 216 (271)
+++.+ |+.
T Consensus 240 ll~~lfG~~ 248 (350)
T 1b7y_A 240 LAQALFGPD 248 (350)
T ss_dssp HHHHHSCSS
T ss_pred HHHhhcCCC
Confidence 88887 863
No 52
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.81 E-value=3e-08 Score=92.19 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=78.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-----CCCeEeeCCCChHHHHHHH
Q 024194 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-----GNRRVALRPELTPSLARLV 157 (271)
Q Consensus 83 lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-----~G~~laLRPD~T~~iAR~~ 157 (271)
.-.-.+.+..|...+++.|...||.||+||++.... +++...+.|++.-- .+....|+----.-.-|.+
T Consensus 32 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~------~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT------VTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------CCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC------CCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 345679999999999999999999999999998533 22222345554211 1245667733333344445
Q ss_pred HHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 158 IQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 158 a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
+... -|+|+||+|||+|.....|..||||+++|.-+.+-.+
T Consensus 106 ~~g~------~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d 146 (345)
T 3a5y_A 106 VAGC------GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYR 146 (345)
T ss_dssp HTTC------CSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHH
T ss_pred HcCC------CcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHH
Confidence 5432 3999999999999887778999999999999986443
No 53
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=1e-07 Score=93.02 Aligned_cols=131 Identities=21% Similarity=0.280 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeC-------------------------
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDR------------------------- 138 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~---~~~~~y~f~D~------------------------- 138 (271)
..-...+.+.++++|...||+|+.+|.++...-.....|+. ..++.|.+.++
T Consensus 56 ~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~ 135 (549)
T 2du7_A 56 PHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEE 135 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCC
T ss_pred cCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccc
Confidence 45578889999999999999999999998644322222222 12225555432
Q ss_pred -------------CC----------------------------------------CeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 139 -------------GN----------------------------------------RRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 139 -------------~G----------------------------------------~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
.+ +..+||+.+++++...+..+.....
T Consensus 136 ~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~r~~ 215 (549)
T 2du7_A 136 KKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRK 215 (549)
T ss_dssp CSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTTTSC
T ss_pred hhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHHhcCC
Confidence 01 3679999999988887776655557
Q ss_pred CCeEEEEEeceeecCCC-CCCCCcceEEeEEEEEecCc-HH----HHHHHHHhCCCCc
Q 024194 166 LPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPA-VT----VLQEVLRCHSIPE 217 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~-~~Gr~REf~Q~gvEiiG~~~-~~----ll~~~L~~lGi~~ 217 (271)
.|+|+|.+|+|||.+.. ...+.+||+|+++-+.|.+. .. ++..+|+.+|+.+
T Consensus 216 ~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~LGi~~ 273 (549)
T 2du7_A 216 LPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTK 273 (549)
T ss_dssp SSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTCCC
T ss_pred CCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe
Confidence 89999999999997653 44577999999999999742 22 7888999899743
No 54
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.64 E-value=2.2e-07 Score=84.41 Aligned_cols=123 Identities=14% Similarity=0.156 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHH-hhhh-hcccc----ccccEEEeeCCCCeEeeCCCChHHHHHHHHHcC
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRK-AGEEI----RDQLYCFEDRGNRRVALRPELTPSLARLVIQKG 161 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~-~~~~-~g~~~----~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~ 161 (271)
.....+.+.+++.|...||.|+.+|.++.... |... ..... ..+.+.+. +..+||+.+++.+.|.++.+.
T Consensus 53 ~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~----e~~vLRtsl~p~ll~~l~~N~ 128 (294)
T 2rhq_A 53 HPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT----DEILMRTHTSPVQARTMEKRN 128 (294)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----SSEEECSSSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----CcceeeccCHHHHHHHHHhcC
Confidence 34677888999999999999999999887532 2221 11100 01134442 568999999999999998764
Q ss_pred CCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-cHH----HHHHHHHhC-CCC
Q 024194 162 KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCH-SIP 216 (271)
Q Consensus 162 ~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~l-Gi~ 216 (271)
...|+|+|.+|+|||++.....+..||+|+++-+.|.+ +.. ++..+++.+ |+.
T Consensus 129 --~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 129 --GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGAD 187 (294)
T ss_dssp --TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHCTT
T ss_pred --CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHhCCC
Confidence 35799999999999976422335679999999999964 222 777888887 864
No 55
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.60 E-value=3.2e-07 Score=87.76 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
-.+.+..+...+++.|...||.||+||++...+. . | ..++|.+.. -|+.+.|+--.....=++++..
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~--e--g---~~~~f~~~~-~~~~~yL~~Spql~~q~l~~~g----- 202 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT--E--G---GTELFPMKY-FEEDAFLAQSPQLYKQIMMASG----- 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS--S--C---SSSCCEEEE-TTEEEEECSCSHHHHHHGGGTT-----
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC--C--C---CccceeEee-CCccEEEecChHHHHHHHHhcC-----
Confidence 3477889999999999999999999999986532 1 2 134666543 4677889844444333444332
Q ss_pred CCeEEEEEeceeecCCCCCCC-CcceEEeEEEEEecCcH
Q 024194 166 LPLKWFAVGQCWRYERMTRGR-RREHYQWNMDIIGVPAV 203 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~Gr-~REf~Q~gvEiiG~~~~ 203 (271)
--|+|+||+|||+|....+| ..||+|+++|.-+.++.
T Consensus 203 -~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~ 240 (438)
T 3nem_A 203 -LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDE 240 (438)
T ss_dssp -CCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSH
T ss_pred -CCceEEEcceEECCCCCCcccccceeeeeeeeccCccH
Confidence 34999999999999876654 56999999999998843
No 56
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.55 E-value=1.2e-06 Score=86.43 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeC-------------------------
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDR------------------------- 138 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~---~~~~y~f~D~------------------------- 138 (271)
..-...+.+.++++|...||+|+.+|.++...-.....|+.. .++.|.+.++
T Consensus 64 ~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~ 143 (648)
T 2odr_B 64 THPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143 (648)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC-----------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchh
Confidence 355778899999999999999999999976432212222211 1224444421
Q ss_pred ----------------------------------------------------CCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 024194 139 ----------------------------------------------------GNRRVALRPELTPSLARLVIQKGKSVSL 166 (271)
Q Consensus 139 ----------------------------------------------------~G~~laLRPD~T~~iAR~~a~~~~~~~~ 166 (271)
..+..+||+.+++++...+..+......
T Consensus 144 ~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~~ 223 (648)
T 2odr_B 144 KESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL 223 (648)
T ss_dssp ----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCS
T ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCCC
Confidence 1135799999999888877776555578
Q ss_pred CeEEEEEeceeecCCC-CCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCCc
Q 024194 167 PLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIPE 217 (271)
Q Consensus 167 P~K~yyig~VfR~e~~-~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~~ 217 (271)
|+|+|.+|+|||.+.. ...+..||+|+++-+.|.+ +.. ++..+|+.+|+.+
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi~~ 280 (648)
T 2odr_B 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN 280 (648)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred CeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe
Confidence 9999999999997653 3345789999999999974 222 7888999999853
No 57
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.55 E-value=5.9e-07 Score=85.86 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHcCC
Q 024194 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (271)
Q Consensus 85 ~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLR--PD~T~~iAR~~a~~~~ 162 (271)
.-.+.+..|...+++.|...||.||+||++.....- |. .++|.+ +--|+.+.|+ |++-.+. .++.
T Consensus 130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~e----G~---~~~F~~-~~~g~~~~L~~SpqLylq~--l~~g--- 196 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVE----GG---STLFNL-DYFGEQSFLTQSSQLYLET--CIPT--- 196 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSS----CT---TSCCEE-EETTEEEEECSCSHHHHHH--HHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCC----Cc---hhceee-ccCCcccccCCChHHHHHH--hhhc---
Confidence 345778899999999999999999999999754321 21 235654 3357778887 5554443 3332
Q ss_pred CCCCCeEEEEEeceeecCCCCCCC-CcceEEeEEEEEecCcHH
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGR-RREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr-~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|+||+|||+|....+| .-||||+++|.-+.+-.+
T Consensus 197 ----~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d 235 (435)
T 2xgt_A 197 ----LGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDD 235 (435)
T ss_dssp ----HCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHH
T ss_pred ----cCceEEEecceecCCCCccccccceeEEEEEEecCCHHH
Confidence 13999999999999876655 459999999999986443
No 58
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.55 E-value=1.3e-06 Score=86.42 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeC-------------------------
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDR------------------------- 138 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~---~~~~y~f~D~------------------------- 138 (271)
..-...+.+.++++|...||+|+.+|.++...-.....|+.. .++.|.+.++
T Consensus 64 ~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~ 143 (665)
T 2odr_A 64 THPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143 (665)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC-----------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchh
Confidence 355778899999999999999999999976432212122211 1224444421
Q ss_pred ----------------------------------------------------CCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 024194 139 ----------------------------------------------------GNRRVALRPELTPSLARLVIQKGKSVSL 166 (271)
Q Consensus 139 ----------------------------------------------------~G~~laLRPD~T~~iAR~~a~~~~~~~~ 166 (271)
..+..+||+.+++++...+..+......
T Consensus 144 ~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~~R~~~ 223 (665)
T 2odr_A 144 KESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL 223 (665)
T ss_dssp ----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCS
T ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhcCCC
Confidence 1135799999999888877776555578
Q ss_pred CeEEEEEeceeecCCC-CCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCCc
Q 024194 167 PLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIPE 217 (271)
Q Consensus 167 P~K~yyig~VfR~e~~-~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~~ 217 (271)
|+|+|.+|+|||.+.. ...+..||+|+++-+.|.+ +.. ++..+|+.+|+.+
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi~~ 280 (665)
T 2odr_A 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN 280 (665)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred CeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe
Confidence 9999999999997653 3345689999999999974 222 7888999999853
No 59
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.54 E-value=1.3e-06 Score=86.42 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeC-------------------------
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDR------------------------- 138 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~---~~~~y~f~D~------------------------- 138 (271)
..-...+.+.++++|...||+|+.+|.++...-.....|+.. .++.|.+.++
T Consensus 64 ~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~ 143 (685)
T 2odr_D 64 THPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143 (685)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC-----------------------
T ss_pred cCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchh
Confidence 355778899999999999999999999976432212122211 1224444421
Q ss_pred ----------------------------------------------------CCCeEeeCCCChHHHHHHHHHcCCCCCC
Q 024194 139 ----------------------------------------------------GNRRVALRPELTPSLARLVIQKGKSVSL 166 (271)
Q Consensus 139 ----------------------------------------------------~G~~laLRPD~T~~iAR~~a~~~~~~~~ 166 (271)
..+..+||+.+++++...+..+......
T Consensus 144 ~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~ 223 (685)
T 2odr_D 144 KESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL 223 (685)
T ss_dssp ----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCS
T ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCC
Confidence 1135799999999888877776555578
Q ss_pred CeEEEEEeceeecCCC-CCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCCc
Q 024194 167 PLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIPE 217 (271)
Q Consensus 167 P~K~yyig~VfR~e~~-~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~~ 217 (271)
|+|+|.+|+|||.+.. ...+..||+|+++-+.|.+ +.. ++..+|+.+|+.+
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~LGi~~ 280 (685)
T 2odr_D 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN 280 (685)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred CeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe
Confidence 9999999999997653 3345789999999999974 222 7888999999853
No 60
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.53 E-value=1.5e-06 Score=86.33 Aligned_cols=131 Identities=20% Similarity=0.283 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCC------------------------
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRG------------------------ 139 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~---~~~~y~f~D~~------------------------ 139 (271)
..-...+.+.++++|...||+|+.+|.++...-.....|+.. .++.|.+.++.
T Consensus 64 ~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~~~~i~~~g~~is~~ 143 (701)
T 2odr_C 64 THPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143 (701)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC-----------------------
T ss_pred cCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchh
Confidence 355778899999999999999999999976432212222211 12245444311
Q ss_pred -------------C----------------------------------------CeEeeCCCChHHHHHHHHHcCCCCCC
Q 024194 140 -------------N----------------------------------------RRVALRPELTPSLARLVIQKGKSVSL 166 (271)
Q Consensus 140 -------------G----------------------------------------~~laLRPD~T~~iAR~~a~~~~~~~~ 166 (271)
| +..+||+.+++++...+..+......
T Consensus 144 ~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~ 223 (701)
T 2odr_C 144 KESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPL 223 (701)
T ss_dssp ----------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTTTSCS
T ss_pred hhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCC
Confidence 1 25799999999888877776555578
Q ss_pred CeEEEEEeceeecCCC-CCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCCc
Q 024194 167 PLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIPE 217 (271)
Q Consensus 167 P~K~yyig~VfR~e~~-~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~~ 217 (271)
|+|+|.+|+|||.+.. ...+..||+|+++-+.|.+ +.. ++..+|+.+|+.+
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~LGi~~ 280 (701)
T 2odr_C 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN 280 (701)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred CeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe
Confidence 9999999999997643 3345689999999999974 222 7888999999853
No 61
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=98.41 E-value=2.3e-06 Score=74.03 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCC
Q 024194 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLP 167 (271)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~~~P 167 (271)
..+++++.+++.+...||.|+.|-.|...+.+.. .+........++.++ +.+.-+||+.+.+++.+.++.+......+
T Consensus 5 ~~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~ 83 (213)
T 3ica_A 5 RRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLS 83 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCC
Confidence 3567889999999999999999999887765532 121112345667676 67789999999999999998776544456
Q ss_pred eEEEEEeceeecCCCC------CCCCcceEEeEEEEEecC------------cHH----HHHHHHHhCCCC
Q 024194 168 LKWFAVGQCWRYERMT------RGRRREHYQWNMDIIGVP------------AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 168 ~K~yyig~VfR~e~~~------~Gr~REf~Q~gvEiiG~~------------~~~----ll~~~L~~lGi~ 216 (271)
+|+|.+|+||+.+... .+...|...+++-+.|.. +.. ++..+|+.+|++
T Consensus 84 ~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~ 154 (213)
T 3ica_A 84 LYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIE 154 (213)
T ss_dssp EEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCC
T ss_pred eeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 9999999999976421 123578889999888852 122 788899999997
No 62
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=98.41 E-value=3.3e-06 Score=73.01 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCe
Q 024194 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (271)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~~~P~ 168 (271)
.+++++.+++.+...||.|+.|-.|...+.+.. .+.....+..++.++ +.+.-+||+.+.+++.+.++.+......++
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 457888999999999999999998877665432 121112356777776 677889999999999999988765545669
Q ss_pred EEEEEeceeecCCCC------CCCCcceEEeEEEEEecC----------cHH------HHHHHHHhCCCC
Q 024194 169 KWFAVGQCWRYERMT------RGRRREHYQWNMDIIGVP----------AVT------VLQEVLRCHSIP 216 (271)
Q Consensus 169 K~yyig~VfR~e~~~------~Gr~REf~Q~gvEiiG~~----------~~~------ll~~~L~~lGi~ 216 (271)
|+|.+|+||+.+... .+..+|...+++-+.|.. ... ++..+|+.+|++
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999976421 123578889999888841 111 788899999997
No 63
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=98.39 E-value=2.6e-06 Score=84.26 Aligned_cols=102 Identities=18% Similarity=0.312 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHH--HHHcCC
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARL--VIQKGK 162 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D--~~G~~laLRPD~T~~iAR~--~a~~~~ 162 (271)
.+.|..|...+|+.|...||.||+||++..... .|. .. |.+.. ..|..++|+ ..+++... ++..
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~----eGA---r~-F~v~~~~~~~~~y~L~--qSPQl~kq~Lmv~G-- 205 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATP----EGA---RD-YLVPSRVHKGKFYALP--QSPQLFKQLLMMSG-- 205 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SSS---CC-CEEECSSSTTCEEECC--SCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CCC---cc-ceecccccCCceEeCc--cCHHHHHHHHHhcC--
Confidence 456778899999999999999999999974321 121 22 44332 357777788 44444443 3321
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|+||+|||+|.....|.-||||+++|.-..+-.+
T Consensus 206 ----~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~d 243 (585)
T 1c0a_A 206 ----FDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQ 243 (585)
T ss_dssp ----CCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHH
T ss_pred ----CCceEEEeceeecCCCCCCcCcccceeeeeecCCCHHH
Confidence 24999999999999877666559999999999986433
No 64
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=98.37 E-value=2.9e-06 Score=83.83 Aligned_cols=104 Identities=19% Similarity=0.333 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D--~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
.+.+..+...+++.|...||.||+||++..... .|. .. |.+.. ..|..++|+ ..+++......-..
T Consensus 144 l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~----eGA---r~-F~v~~~~~~~~~y~L~--qSPQl~kq~Lmv~G-- 211 (580)
T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP----EGA---RD-FLVPYRHEPGLFYALP--QSPQLFKQMLMVAG-- 211 (580)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SSS---CC-CEEECTTSTTEEEECC--SCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CCC---CC-ccccccccCCceeECc--cCHHHHHHHHHHhc--
Confidence 466788899999999999999999999974321 121 12 44322 246667787 44454443221111
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|+||+|||+|.....|.-||||+++|.-+.+-.+
T Consensus 212 --~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d~~d 249 (580)
T 1l0w_A 212 --LDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVED 249 (580)
T ss_dssp --CSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHH
T ss_pred --cCCeEEEeceeeCCCCCCCcCCCccceeeeecCCCHHH
Confidence 24999999999999877766569999999999986433
No 65
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.32 E-value=5.1e-06 Score=81.07 Aligned_cols=105 Identities=12% Similarity=0.150 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~-D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+++.|...||.||+||++.... .|. ..+.|... +.-|..+.||----.-.=|+++..
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gGa--~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g---- 243 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GGA--VAKPFITYHNELDMNLYMRIAPELYHKMLVVGG---- 243 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SCCCCEEEETTTTEEEEECSCSHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CCc--cccceeeecccCCcceEeeCCHHHHHHHHHhcC----
Confidence 346777889999999999999999999997431 121 13455443 235778889843333333444432
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~ 203 (271)
--|+|+||+|||+|....-|.-||||+++|.-+.+-.
T Consensus 244 --~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~ 280 (521)
T 3bju_A 244 --IDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYH 280 (521)
T ss_dssp --CCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHH
T ss_pred --cCceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHH
Confidence 2499999999999977666788999999999987643
No 66
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.31 E-value=4.6e-06 Score=82.54 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc-cccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCC
Q 024194 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE-IRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLP 167 (271)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~-~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~~~P 167 (271)
.+++.+.+++.|...||.|+.|..|...+......+.. -....+++.++ +.+.-+||+.+.+++.+.++.+.+ .+.|
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~-~~~~ 471 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRK-MPLP 471 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTT-SCSC
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 45668889999999999999999998766322222211 01345666665 556789999999999999987754 3469
Q ss_pred eEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-cHH----HHHHHHHhCCCCc
Q 024194 168 LKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-AVT----VLQEVLRCHSIPE 217 (271)
Q Consensus 168 ~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-~~~----ll~~~L~~lGi~~ 217 (271)
+|+|.+|+||+.+.......+|+.|+++-+.|.. +.. ++..+++.+|++.
T Consensus 472 vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~lg~~~ 526 (589)
T 3l4g_B 472 LKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPP 526 (589)
T ss_dssp EEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHTTCCB
T ss_pred eEEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHcCCCc
Confidence 9999999999986433334679999999888864 333 6778899999863
No 67
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=98.31 E-value=5.4e-06 Score=80.98 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEE-eeCCCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f-~D~~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
-.+.+..|...+++.|...||.||+||++.... .|. ....|.. .+.-|..+.||----.-+=|.++..
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gGA--~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G---- 271 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GGA--AAKPFVTHHNALDMEMFLRIAPELYLKRLIVGG---- 271 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SSCCCEEEETTTTEEEEECSCSHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CCC--cccccccccccCCcceecccCHHHHHHHHHhcC----
Confidence 347788899999999999999999999997421 121 1234432 2334667788833333333445442
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcH
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~ 203 (271)
--|+|+||+|||+|....-|.-||||+++|.-..+-.
T Consensus 272 --~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~ 308 (529)
T 4ex5_A 272 --FERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYR 308 (529)
T ss_dssp --CSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHH
T ss_pred --CCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHH
Confidence 2499999999999977666788999999999987643
No 68
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=98.23 E-value=7.1e-06 Score=78.84 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
-.+.+..|...+++.|...||.||+||++...+.- |. .++|.+ |--|+.+.|+--...-.=++++. .
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~e----Gg---~~~f~~-~~~~~~~~L~~SpqL~lq~l~~g-~---- 221 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCE----GG---STLFKL-QYFNEPAYLTQSSQLYLESVIAS-L---- 221 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC-------------CCCCEE-EETTEEEEECSCCHHHHHTTHHH-H----
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCC----Cc---cccccc-cccCCCcccccCHHHHHHHHHhc-c----
Confidence 34778899999999999999999999999654321 21 234543 33466777775544444444442 2
Q ss_pred CCeEEEEEeceeecCCCCCC-CCcceEEeEEEEEecCcH
Q 024194 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPAV 203 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEiiG~~~~ 203 (271)
-|+|+||+|||+|..... +.-||+|+++|.-+.+-.
T Consensus 222 --~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~ 258 (456)
T 3m4p_A 222 --GKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFE 258 (456)
T ss_dssp --SSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHH
T ss_pred --CcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHH
Confidence 389999999999976543 457999999999998643
No 69
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=98.21 E-value=1.5e-05 Score=79.18 Aligned_cols=102 Identities=22% Similarity=0.382 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeCCCChHHHHH--HHHHcCC
Q 024194 87 MRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLAR--LVIQKGK 162 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~-~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D-~~G~~laLRPD~T~~iAR--~~a~~~~ 162 (271)
.+.+..+...+++.|. ..||.||+||++-... ..|. .-|.+.. ..|..+.|+- .+++.. .++..
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~GA----~~F~v~~~~~g~~~~L~q--Spql~kq~l~v~g-- 215 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGGA----KEFLVPSREPGKFYSLPQ--SPQQFKQLLMVGG-- 215 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSSS----CCCEEECSSTTCEEECCS--STTHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCCC----cCceeccccCCccccccc--CHHHHHHHHHhcc--
Confidence 3567788999999996 7999999999996421 1121 1244332 2577778873 333332 33332
Q ss_pred CCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCcHH
Q 024194 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVT 204 (271)
Q Consensus 163 ~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~~~ 204 (271)
--|+|+||+|||+|.....|..||||+++|.-+.+-.+
T Consensus 216 ----~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d 253 (617)
T 4ah6_A 216 ----LDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTG 253 (617)
T ss_dssp ----CSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHH
T ss_pred ----cCcEEEEEhheecccCCCCcCcceecceeeecCCCHHH
Confidence 24999999999999887778899999999999876543
No 70
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=98.17 E-value=9.1e-06 Score=79.60 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~ 165 (271)
-.+.+..+...+++.|...||.||+||++..... .. | .+.|.+ +--|..+.|+--.-.-.-+.++..
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--eg-g----a~~F~v-~~~~~~~yL~~Spql~~k~ll~~g----- 309 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS--EG-G----SNIFEV-KYFDRKAYLAQSPQLYKQMAIMGD----- 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCTHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC--CC-C----cceeEE-ecCCCceEeccCHHHHHHHHHhcC-----
Confidence 3477889999999999999999999999976542 11 1 234543 223445677733322333444432
Q ss_pred CCeEEEEEeceeecCCCCCC-CCcceEEeEEEE-EecC
Q 024194 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDI-IGVP 201 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~G-r~REf~Q~gvEi-iG~~ 201 (271)
--|+|+||+|||+|..... +.-||+|+++|. |+.+
T Consensus 310 -~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d 346 (548)
T 3i7f_A 310 -FRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVEN 346 (548)
T ss_dssp -CCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSC
T ss_pred -cCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcC
Confidence 3599999999999976433 567999999997 5533
No 71
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=98.16 E-value=1.1e-05 Score=82.50 Aligned_cols=126 Identities=12% Similarity=0.055 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccc-cEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCC
Q 024194 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQ-LYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV 164 (271)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~-~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~ 164 (271)
....+.+.+.+++.|...||.|+.|..|...+.+ ...+. ... .+++.++ +.+.-+||+.+.+++.+.++.+.+..
T Consensus 492 ~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~ 568 (795)
T 2rhq_B 492 LTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFAL--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARK 568 (795)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTCS--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhCC--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCC
Confidence 3446778888999999999999998887766544 22221 244 5777766 55677999999999999998875555
Q ss_pred CCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC------------cHH----HHHHHHHhCCCC
Q 024194 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP------------AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~------------~~~----ll~~~L~~lGi~ 216 (271)
..|+|+|.+|+|||.+....++ .|+.|+++=+.|.. +.. ++..+|+.+|++
T Consensus 569 ~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~ 635 (795)
T 2rhq_B 569 NKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLE 635 (795)
T ss_dssp CCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 6899999999999964322123 89999999999863 222 788888888984
No 72
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.05 E-value=4.7e-06 Score=76.84 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=90.6
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhh-hccc-c---ccccEEEeeCCCCeE
Q 024194 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK-AGEE-I---RDQLYCFEDRGNRRV 143 (271)
Q Consensus 70 ~~~~~~p~G~~d~lp~e~~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d-~~~~~-~g~~-~---~~~~y~f~D~~G~~l 143 (271)
.++..+|.+-.. +........+.+.++++|...||.++.+|.++... .|..- ...+ . ...+|.+. +..
T Consensus 91 ~id~TLP~~~~~--~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~----e~~ 164 (327)
T 3pco_A 91 TIDVSLPGRRIE--NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD----TTR 164 (327)
T ss_dssp CCCTTSCCCCCC--CCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS----SSC
T ss_pred CCCCcCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC----CCc
Confidence 355566654322 23335577888999999999999999999886522 22110 0000 0 02244442 457
Q ss_pred eeCCCChHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecCc-HH----HHHHHHHhC
Q 024194 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA-VT----VLQEVLRCH 213 (271)
Q Consensus 144 aLRPD~T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~-~~----ll~~~L~~l 213 (271)
+||..+++..+|.+..+ ..|+|+|.+|+|||.+ ....+..+|+|+..-++|.+- .. ++..+++.+
T Consensus 165 vLRThtsp~~lr~l~~~----~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 165 LLRTQTSGVQIRTMKAQ----QPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp EECSCTHHHHHHHHTTC----CSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred eecccCCHHHHHHHHhC----CCCeeEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988653 4699999999999987 345577899999877787542 22 667777776
No 73
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=97.85 E-value=6.3e-05 Score=76.70 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCC-C
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV-S 165 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~-~ 165 (271)
...+.+.+.+++.+...||.|+.|-.|...+.+ ...+. ....+++.++ +.+.-+||+.+.+++.+.++.+.+.. .
T Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~--~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~ 565 (785)
T 1b7y_B 489 EAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRL--DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRP 565 (785)
T ss_dssp THHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTC--CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcCC--CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCC
Confidence 346677888999999999999998777666544 22221 2345677765 56677999999999999998765444 5
Q ss_pred CCeEEEEEeceeecCCCCCCCCcceEEeEEEEEecC-----------cHH----HHHHHHHhCCCC
Q 024194 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP-----------AVT----VLQEVLRCHSIP 216 (271)
Q Consensus 166 ~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEiiG~~-----------~~~----ll~~~L~~lGi~ 216 (271)
.|+|+|.+|+||| + .|+.|+++=+.|.. +.. ++..+|+.+|++
T Consensus 566 ~~vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi~ 623 (785)
T 1b7y_B 566 ERALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLA 623 (785)
T ss_dssp SCEEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCCc
Confidence 7999999999999 2 79999999999974 332 778888888873
No 74
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.25 E-value=0.00084 Score=63.66 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHc--------CCeeecC-CcccchH-Hhhhhhcc--c--c--ccccEEEeeCCCCeEeeCCCC
Q 024194 86 DMRLRNWLFHNFQEVSRLF--------GFEEVDF-PVLESEA-LFIRKAGE--E--I--RDQLYCFEDRGNRRVALRPEL 149 (271)
Q Consensus 86 e~~~~~~i~~~l~~vf~~~--------Gy~eI~t-P~~E~~d-~~~~~~g~--~--~--~~~~y~f~D~~G~~laLRPD~ 149 (271)
...-...+.+.++++|... ||+++.+ |.++... .|.. .+- + . ....|.+. +..+||..+
T Consensus 46 ~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~-L~~p~dHpaR~~~Dtfyi~----~~~vLRTht 120 (415)
T 3cmq_A 46 QHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDS-LLIPADHPSRKKGDNYYLN----RTHMLRAHT 120 (415)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGG-GTCCTTCGGGCGGGSCBSS----SSEEECSSG
T ss_pred CCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHH-hCCCCCCCcccccceEEec----CCeEEcCCC
Confidence 3455677777788888776 9999998 6666543 3422 111 0 1 13345442 348999999
Q ss_pred hHHHHHHHHHcCCCCCCCeEEEEEeceeecCCCCCCCCcceEEeEEEEE
Q 024194 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDII 198 (271)
Q Consensus 150 T~~iAR~~a~~~~~~~~P~K~yyig~VfR~e~~~~Gr~REf~Q~gvEii 198 (271)
++..+|.+..+ .| |++.+|.|||.+.....++.+|+|...=.+
T Consensus 121 s~~~~~~l~~~-----~~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~l 163 (415)
T 3cmq_A 121 SAHQWDLLHAG-----LD-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRL 163 (415)
T ss_dssp GGGHHHHHHTT-----CS-EEEEEEEEECCCCCBTTBCSEEEEEEEEEE
T ss_pred cHHHHHHHHHC-----CC-CEEEeeeEEeccchhhhhhHHhcCCCcEEE
Confidence 99999998653 25 999999999999777788999998864333
No 75
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.12 E-value=0.0015 Score=66.75 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHcCCCCCCCeEEE
Q 024194 93 LFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLKWF 171 (271)
Q Consensus 93 i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~-~G~~laLRPD~T~~iAR~~a~~~~~~~~P~K~y 171 (271)
..+.+++.+...||.|+.|=.|...+.+..- +. .++..++.++ +.+.=+||+.+-+++...++.+.+....++|+|
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~-~~--~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lF 570 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMI-HP--GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIF 570 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHH-SS--SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhh-CC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEE
Confidence 4567788888999999999998877654332 21 2345666666 667789999999999999988766556789999
Q ss_pred EEeceeecCCCCCCCCcceEEeEEEEEecCc------------HH----HHHHHHHhCCC
Q 024194 172 AVGQCWRYERMTRGRRREHYQWNMDIIGVPA------------VT----VLQEVLRCHSI 215 (271)
Q Consensus 172 yig~VfR~e~~~~Gr~REf~Q~gvEiiG~~~------------~~----ll~~~L~~lGi 215 (271)
.+|+||..+.......+|...+++=+.|... .. ++..+|..+|+
T Consensus 571 EiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 571 ESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred EeeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999764333356788999998888531 22 77888898887
No 76
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=68.86 E-value=4.5 Score=37.57 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=46.4
Q ss_pred cHHHHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 024194 202 AVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 262 (271)
Q Consensus 202 ~~~ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K 262 (271)
+..++..+++.+|++++....++..+++ .+...+++.++.++++++.++.|.+++...
T Consensus 167 ~~~i~~~ll~~~~~~~~~~~~l~~~l~~---~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~ 224 (400)
T 3od1_A 167 HVGYVNALLMDVVGNEQRADRLRRFLYE---KNYVGYREHVKSLNLSTIDKSRLMNLLSLR 224 (400)
T ss_dssp EHHHHHHHHHHHHCCHHHHHHHHHHHHT---TCHHHHHHHHHHSSSCHHHHHHHHHGGGCE
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHh---cChhHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 4447889999999998776667666655 566778888889999999999999888654
No 77
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=64.25 E-value=4.4 Score=38.27 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=31.3
Q ss_pred hhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHhH
Q 024194 230 IEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTE 266 (271)
Q Consensus 230 l~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~~ 266 (271)
++.+|...++.+++.+|++++....++.+++.++..+
T Consensus 182 i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~ 218 (465)
T 3net_A 182 IRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIG 218 (465)
T ss_dssp EEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHH
T ss_pred EEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccC
Confidence 3668899999999999999998899999998766443
No 78
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=52.96 E-value=6.2 Score=36.29 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCccchhhHHHHHHhhhcCCHHHH
Q 024194 205 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVI 238 (271)
Q Consensus 205 ll~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i 238 (271)
++..+++.+|++++....++..+++.++..++.+
T Consensus 191 i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~~ 224 (373)
T 3rac_A 191 LVPRLLDALGISASLSRAFLACLTSGNYVQFREL 224 (373)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHHH
Confidence 7789999999998877778888877655444433
No 79
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=52.54 E-value=35 Score=30.33 Aligned_cols=97 Identities=16% Similarity=0.059 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHcCCCCCCC
Q 024194 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (271)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~~E~~d~~~~~~g~~~~~~~y~f~D~~G~~laLRPD~T~~iAR~~a~~~~~~~~P 167 (271)
...+.++-.+.+.....|+..+.+=-+|- +.|.. ....+.|.+ .+.|
T Consensus 25 ~~fQ~iIl~Lq~fWa~qGC~i~QPyD~Ev------GAGT~---------------------hPaTfLRal------GpeP 71 (311)
T 3rf1_A 25 MTFSQMILNLQNYWQEQGCAIMQPYDMPA------GAGTF---------------------HPATFLRSL------GKKP 71 (311)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCSSCC------SSGGG---------------------SHHHHTTTS------SSSC
T ss_pred CcHHHHHHHHHHHHHHCCCEEECCccccc------cCCCC---------------------CHHHHHHhc------CCCc
Confidence 44667777777777888887665443331 11211 011222221 3579
Q ss_pred eEEEEEeceeecCCCCCC----CCcceEEeEEEEEecCc--HHHHHHHHHhCCCCc
Q 024194 168 LKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPA--VTVLQEVLRCHSIPE 217 (271)
Q Consensus 168 ~K~yyig~VfR~e~~~~G----r~REf~Q~gvEiiG~~~--~~ll~~~L~~lGi~~ 217 (271)
.+..|+.++-|...-..| |...++|.-|-+==+++ .++..++|+.+||+.
T Consensus 72 w~~AYVqPsRRP~DGRYGeNPNRLq~yyQfQVilKPsP~niQeLYL~SL~alGId~ 127 (311)
T 3rf1_A 72 WAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDL 127 (311)
T ss_dssp EEEEEEEEEECGGGCCTTCCSSCCSEEEEEEEEEESCCTTHHHHHHHHHHHTTCCG
T ss_pred ceeeeeccCCCCCCCCcCCCchhhhhheeeEEEEcCCCccHHHHHHHHHHHhCCCc
Confidence 999999999998754444 66788998876654443 238889999999985
No 80
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=48.38 E-value=36 Score=30.08 Aligned_cols=53 Identities=23% Similarity=0.160 Sum_probs=38.8
Q ss_pred CCCeEEEEEeceeecCCCCCC----CCcceEEeEEEEEecCc--HHHHHHHHHhCCCCc
Q 024194 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPA--VTVLQEVLRCHSIPE 217 (271)
Q Consensus 165 ~~P~K~yyig~VfR~e~~~~G----r~REf~Q~gvEiiG~~~--~~ll~~~L~~lGi~~ 217 (271)
+.|.+..|+.++.|......| |...++|.-|-+==+++ .++..++|+.+||+.
T Consensus 57 pepw~~AYVqPsRRP~DGRYGeNPNRLq~y~QfQVilKPsP~niQeLYL~SL~alGid~ 115 (298)
T 1j5w_A 57 KGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINL 115 (298)
T ss_dssp SSCEEEEEEEEEECCC-----CCTTCCSEEEEEEEEEESCCSSHHHHHHHHHHHTTCCT
T ss_pred CCcceeeeeccCCCCCCCCcCCCchhhhhheeeEEEECCCCccHHHHHHHHHHHhCCCc
Confidence 579999999999998754433 67788998876654443 238889999999985
No 81
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=45.17 E-value=12 Score=35.20 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHhCCCCHHHHHHHHHHHhc---CCHhHHh
Q 024194 231 EKLPLDVIKNDLKSAGMSEAAIEELLRVLSI---KSLTELE 268 (271)
Q Consensus 231 ~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~---K~~~~l~ 268 (271)
+.++...++.+|+.+|++++....+..+++. ++.++++
T Consensus 186 ~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~ 226 (456)
T 3lc0_A 186 KVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVE 226 (456)
T ss_dssp EEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHH
T ss_pred EEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHH
Confidence 4567999999999999999888887777754 3444443
No 82
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=44.91 E-value=39 Score=23.54 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHhCCC--CHHHHHHHHHHHhcCCHhHH
Q 024194 232 KLPLDVIKNDLKSAGM--SEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 232 ~~~~~~i~~~L~~lgL--s~~~~~~L~~~l~~K~~~~l 267 (271)
....+.++.+|+..|+ +++..+.+.+.++.||+.++
T Consensus 18 ~~ta~~I~~il~aaGvevd~~~~~~~~~aL~gk~i~el 55 (70)
T 2lbf_B 18 SPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDV 55 (70)
T ss_dssp SCCHHHHHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHH
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHH
Confidence 4568889999987765 67779999999999998876
No 83
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=40.66 E-value=59 Score=21.63 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhCCC--CHHHHHHHHHHHhcCCHhHH
Q 024194 233 LPLDVIKNDLKSAGM--SEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 233 ~~~~~i~~~L~~lgL--s~~~~~~L~~~l~~K~~~~l 267 (271)
...+.++++|+..|+ ++.....+.+.++.||+.++
T Consensus 17 ~t~~~I~~il~aaGveve~~~~~~~~~~L~gk~i~el 53 (58)
T 3a1y_A 17 INEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEV 53 (58)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHH
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHH
Confidence 467889999988764 68889999999999998876
No 84
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=37.86 E-value=48 Score=24.30 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=25.3
Q ss_pred hcCCHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024194 231 EKLPLDVIKNDLKSAGMSEAAIEELLRVL 259 (271)
Q Consensus 231 ~~~~~~~i~~~L~~lgLs~~~~~~L~~~l 259 (271)
-..+.+.|+.+|+..+|++++.+.+.+.=
T Consensus 41 vnLpv~eFn~lL~~~~Lt~~Ql~lIrdiR 69 (90)
T 2lz1_A 41 INLPVVDFNEMMSKEQFNEAQLALIRDIR 69 (90)
T ss_dssp HHSCHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34789999999999999999999887754
No 85
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=35.21 E-value=94 Score=21.54 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHh
Q 024194 206 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLT 265 (271)
Q Consensus 206 l~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~~ 265 (271)
+...++.+|++...+. ++..+..-... -+.++.+.+|++...+....+-+..+++.
T Consensus 9 ~~~~l~~~~l~~~~~~-il~~l~~~~~~---s~~ela~~l~is~~tv~~~l~~L~~~glv 64 (109)
T 1sfx_A 9 LVKALEKLSFKPSDVR-IYSLLLERGGM---RVSEIARELDLSARFVRDRLKVLLKRGFV 64 (109)
T ss_dssp HHHHHHHTCCCHHHHH-HHHHHHHHCCB---CHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCHHHHH-HHHHHHHcCCC---CHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 4567889999876554 33444322222 34455566799999999999988888754
No 86
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=33.62 E-value=23 Score=32.83 Aligned_cols=33 Identities=6% Similarity=0.115 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 024194 231 EKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 231 ~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~ 263 (271)
+.++...+..+++.+|++++....+...++.++
T Consensus 168 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 200 (464)
T 4g84_A 168 KVNDRRILDGMFAICGVSDSKFRTICSSVDKLD 200 (464)
T ss_dssp EEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGG
T ss_pred eecchhhHHHHHHhhcCcHHHHHHHHHHHHHhc
Confidence 456788999999999999999999998887665
No 87
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=32.33 E-value=67 Score=23.57 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.7
Q ss_pred hhcCCHHHHHHHHHhCCCCHHHHHHHHHH
Q 024194 230 IEKLPLDVIKNDLKSAGMSEAAIEELLRV 258 (271)
Q Consensus 230 l~~~~~~~i~~~L~~lgLs~~~~~~L~~~ 258 (271)
+-..+.++|+.+|+..+|++++...|.+.
T Consensus 40 Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdi 68 (91)
T 2kz5_A 40 IVNLPVDDFNELLARYPLTESQLALVRDI 68 (91)
T ss_dssp HHHSCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33478999999999999999999887764
No 88
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=31.62 E-value=70 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHhCCCCHHHHHHHHHH
Q 024194 232 KLPLDVIKNDLKSAGMSEAAIEELLRV 258 (271)
Q Consensus 232 ~~~~~~i~~~L~~lgLs~~~~~~L~~~ 258 (271)
..+.++|+.+|...+|++++.+.+.+.
T Consensus 38 ~lpv~efn~lLk~~~Ls~~Ql~~ir~~ 64 (92)
T 1skn_P 38 EMSLSELQQVLKNESLSEYQRQLIRKI 64 (92)
T ss_dssp HSCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HCcHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 478999999999999999999887764
No 89
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=31.48 E-value=37 Score=24.63 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=30.4
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCH
Q 024194 226 IIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 264 (271)
Q Consensus 226 ~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~ 264 (271)
+++-+...+.-.+.++.+.+++|+.++.+.++.+..+++
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGK 45 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 334444556667777788899999999999999998874
No 90
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=31.31 E-value=64 Score=29.23 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHH-----HcCCeeecCCcccchHH-hhhh-hcccccccc--EEEeeCCCCeEeeCCCChHHHH---HH
Q 024194 89 LRNWLFHNFQEVSR-----LFGFEEVDFPVLESEAL-FIRK-AGEEIRDQL--YCFEDRGNRRVALRPELTPSLA---RL 156 (271)
Q Consensus 89 ~~~~i~~~l~~vf~-----~~Gy~eI~tP~~E~~d~-~~~~-~g~~~~~~~--y~f~D~~G~~laLRPD~T~~iA---R~ 156 (271)
.-+..+..+++.|+ ..|+.+|.+|+|-.... ++.. .|. +.- |.+.|-.|..+ +++-|+| |+
T Consensus 7 ~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~---ErpV~f~i~~~~~~~~----eivhSLaKWKR~ 79 (330)
T 12as_A 7 AKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGA---EKAVQVKVKALPDAQF----EVVHSLAKWKRQ 79 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTT---CCCCEECCSSSTTCCE----EECSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCc---eecceEecccCCCceE----EEeeeHHHHHHH
Confidence 34455566666666 89999999999876432 2111 111 122 33333334333 3344544 33
Q ss_pred HHHcCCCCCCCeEEEEEeceeecCCC--CCCCCcceEEeEEEEEecCc
Q 024194 157 VIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPA 202 (271)
Q Consensus 157 ~a~~~~~~~~P~K~yyig~VfR~e~~--~~Gr~REf~Q~gvEiiG~~~ 202 (271)
...++. -..--.+|..-+..|.+.. ..-+.-++.|+|.|.+....
T Consensus 80 aL~~y~-f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~ 126 (330)
T 12as_A 80 TLGQHD-FSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDG 126 (330)
T ss_dssp HHHHTT-CCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTT
T ss_pred HHHhCC-CCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEecccc
Confidence 333322 1233589999999998753 23367899999999998765
No 91
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.44 E-value=35 Score=24.09 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=29.5
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCH
Q 024194 226 IIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 264 (271)
Q Consensus 226 ~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~ 264 (271)
+++-+...+.-.+.++.+.+++|+..+.+-++.+..+++
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~ 45 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGK 45 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 334444555666777778899999999999999888764
No 92
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=29.18 E-value=36 Score=32.28 Aligned_cols=34 Identities=6% Similarity=0.091 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHhCCCCHHHHHHHHHHHhcCCH
Q 024194 231 EKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 264 (271)
Q Consensus 231 ~~~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~~ 264 (271)
..++...+..+++.+|++++....+...++.++.
T Consensus 221 ~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk 254 (517)
T 4g85_A 221 KVNDRRILDGMFAICGVSDSKFRTICSSVDKLDK 254 (517)
T ss_dssp EEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTT
T ss_pred cccchhhHHHHHHhhcchHHHHHHHHHHHhhhcc
Confidence 4567889999999999999999999998877653
No 93
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=27.55 E-value=94 Score=23.78 Aligned_cols=31 Identities=10% Similarity=0.282 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 024194 233 LPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 263 (271)
Q Consensus 233 ~~~~~i~~~L~~lgLs~~~~~~L~~~l~~K~ 263 (271)
.+.++++.++...||+.+..++|+++.+..+
T Consensus 49 Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~ 79 (121)
T 3fia_A 49 ITGDQARNFFFQSGLPQPVLAQIWALADMNN 79 (121)
T ss_dssp EEHHHHHHHHGGGCCCHHHHHHHHHHHCTTC
T ss_pred ECHHHHHHHHHHcCCCHHHHHHHHHHHcCCC
Confidence 3468899999999999999999999997653
No 94
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=24.92 E-value=66 Score=27.80 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=6.1
Q ss_pred HHHHHhCCCCcc
Q 024194 207 QEVLRCHSIPEH 218 (271)
Q Consensus 207 ~~~L~~lGi~~~ 218 (271)
.+.++..|+.+.
T Consensus 163 ~~~l~~~~l~~~ 174 (275)
T 1usy_A 163 EFLSHMKKIDLS 174 (275)
T ss_dssp HHHHHHTCCCCT
T ss_pred HHHHHhcCCCHH
Confidence 344555565543
No 95
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=23.07 E-value=1.1e+02 Score=23.02 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHhCC--CCHHHHHHHHHHHhcCCHhHH
Q 024194 233 LPLDVIKNDLKSAG--MSEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 233 ~~~~~i~~~L~~lg--Ls~~~~~~L~~~l~~K~~~~l 267 (271)
...+.|+.+|+..| .++.....+.+.+..||+.+|
T Consensus 17 ~tad~I~~ilkAaGveVe~~~~~~f~~aL~gkdI~eL 53 (106)
T 3izc_v 17 PDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDEL 53 (106)
T ss_dssp CTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCCHHHH
Confidence 55677888887655 467778888888888888765
No 96
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=23.00 E-value=81 Score=21.77 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhCC--CCHHHHHHHHHHHhcCCHhHH
Q 024194 233 LPLDVIKNDLKSAG--MSEAAIEELLRVLSIKSLTEL 267 (271)
Q Consensus 233 ~~~~~i~~~L~~lg--Ls~~~~~~L~~~l~~K~~~~l 267 (271)
...+.++.+|+..| .++.....+.+.++.||+.++
T Consensus 23 ~ta~~I~~il~AaGveve~~~~~lf~~aL~gk~I~el 59 (69)
T 2lbf_A 23 VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSL 59 (69)
T ss_dssp CCHHHHHHHHHHHTCCCCTHHHHHHHHHTTTSCGGGG
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHH
Confidence 46788999998766 567889999999999998775
No 97
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.45 E-value=46 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.2
Q ss_pred cccccccCCCCCCCCC
Q 024194 67 DLQKIDVNPPKGTRDF 82 (271)
Q Consensus 67 ~~~~~~~~~p~G~~d~ 82 (271)
.++.+.+++|+||+|-
T Consensus 57 ~k~kf~LKTPKGT~~~ 72 (73)
T 1x59_A 57 SKQKFVLKTPKSGPSS 72 (73)
T ss_dssp CSCCCCCCSTTCCCCC
T ss_pred cccceeeeCCCCCCCC
Confidence 3467899999999984
No 98
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=20.12 E-value=1.1e+02 Score=27.11 Aligned_cols=51 Identities=18% Similarity=0.009 Sum_probs=27.4
Q ss_pred HHHHHHhCCCCccchhhHHHHHHhhhcCCHHHHHHHHHhCCCCHHHHHHHH
Q 024194 206 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELL 256 (271)
Q Consensus 206 l~~~L~~lGi~~~~~~~v~~~ldkl~~~~~~~i~~~L~~lgLs~~~~~~L~ 256 (271)
....|..||++..+.....--+-.-+..+.+.+-..|.++|++.+++..+.
T Consensus 22 ~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv 72 (343)
T 3mva_O 22 LLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASII 72 (343)
T ss_dssp HHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHH
Confidence 345667788775432111111100133456777777777888777665554
Done!