RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024194
(271 letters)
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 236 bits (605), Expect = 8e-76
Identities = 103/231 (44%), Positives = 141/231 (61%), Gaps = 31/231 (13%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
++ P +G RDFPPE MR R LF F ++ FGFEE D PVLESE L+IRKAGEEI
Sbjct: 25 NMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEI 84
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
+Q++ F +G RVALRPE+TPSLARL++ KG+S+ LP KW+++ QCWRYE +TRGRRR
Sbjct: 85 TEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRR 144
Query: 189 EHYQWNMDIIGVPAVT-------------------------------VLQEVLRCHSIPE 217
EHYQWNMDI+GV +V+ VLQ V+ +
Sbjct: 145 EHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTS 204
Query: 218 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE 268
F VC+I+DK+EK+P + ++ L G+ ++ + LS+KS+ E+
Sbjct: 205 DKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIA 255
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 218 bits (557), Expect = 6e-69
Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 30/229 (13%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
++ + +G RDF PEDM + ++F +E + FGF +DFP LE L+ K+GEE+
Sbjct: 2 YRLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEEL 61
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
Q Y F D+G R V L PE TPS R+V + K + PL+W++ + WRYE GR R
Sbjct: 62 LQQTYSFVDKGGREVTLIPEATPSTVRMVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYR 120
Query: 189 EHYQWNMDIIGVP-----------AVTVLQEV-----------------LRCHSIPEHLF 220
EHYQ+N DI G A ++L + +
Sbjct: 121 EHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDP 180
Query: 221 GKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI-KSLTELE 268
V IID+ K+ + + L+SAG+ E + + + S + + E+
Sbjct: 181 FSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMA 229
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 212 bits (543), Expect = 1e-66
Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 45/243 (18%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE-- 126
KI+ + P G +F P + RL +L + V +GF ++ P +E + K +
Sbjct: 8 DKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGD 67
Query: 127 ------------EIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVG 174
+ + D G+ AL+ + T LA + + ++ P + +
Sbjct: 68 NIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMD 127
Query: 175 QCWRYERMTRGRRREHYQWNMDIIGVPAVT------------------------------ 204
+R ER GR R+ Q ++D++G ++
Sbjct: 128 VVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNR 187
Query: 205 -VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 263
VL + +I E IID +EK+ +K +L+ G++ ++++ + I
Sbjct: 188 KVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDG 247
Query: 264 LTE 266
+
Sbjct: 248 SVD 250
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 182 bits (463), Expect = 3e-55
Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 33/217 (15%)
Query: 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYC 134
P G RD PE + + + E L+G++ ++ P LE + QL+
Sbjct: 12 KPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETV-GVVSAILDQQLFK 70
Query: 135 FEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWN 194
D+ + LRP++T +ARLV K + PL+ +R ++ G+ E Q
Sbjct: 71 LLDQQGNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLG 130
Query: 195 MDIIGVPAVT-----------------------------VLQEVLRCHSIPEHLFGKVCI 225
+++IG + + +L E ++
Sbjct: 131 VELIGDGTASADGEVIALMIAALKRAGLSEFKVAIGHVGYVNALLMDVVGNEQRADRLRR 190
Query: 226 IIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 262
+ + + +KS +S L+ +LS++
Sbjct: 191 FLYEKNYVGYR---EHVKSLNLSTIDKSRLMNLLSLR 224
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 167 bits (426), Expect = 4e-50
Identities = 46/239 (19%), Positives = 83/239 (34%), Gaps = 29/239 (12%)
Query: 46 ASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG 105
++ NG RS + + V + P G +D P+ + R + G
Sbjct: 1 SNAMNGTRSAWGARAWEAVRGFADR-----PPGMQDGYPDFAKRRRAVETRLLSFVEDAG 55
Query: 106 FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165
+E V + E +R E D G VALRPE+TPS+AR+ + +
Sbjct: 56 YEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGR 115
Query: 166 LPLKWFAVGQCWRYER------MTRGRRREHYQWNMDIIGVPA--------VTVLQEVLR 211
P++W + +R G+ E Q ++ IG A + +L E
Sbjct: 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASA 175
Query: 212 CHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGW 270
+ I++ ++ L + G+S + L L+ + +
Sbjct: 176 AAGVRH-----HRIVVSHA-----RLVPRLLDALGISASLSRAFLACLTSGNYVQFREL 224
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 164 bits (416), Expect = 2e-49
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 15/196 (7%)
Query: 61 PSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLF---GFEEVDFPVLESE 117
P + ++ K + E+ N+L +E++R F GF E+ P+L
Sbjct: 49 GKPFRELESELLSRRKKDLQQIYAEERE--NYLGKLEREITRFFVDRGFLEIKSPILIPL 106
Query: 118 ALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCW 177
+ G + +L R ++ LRP LTP+L + + +++ P+K F +G C+
Sbjct: 107 EYI-ERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCY 165
Query: 178 RYERMTRGRRREHYQWNMDIIGVP-----AVTVLQEVLRCHSIPEHLFGKVCIII-DKIE 231
R E + E +G +++ + L I + G C++ D ++
Sbjct: 166 RKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLD 225
Query: 232 KLPLDVIKNDLKSAGM 247
+ D+ +L SA +
Sbjct: 226 VMHGDL---ELSSALV 238
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 136 bits (345), Expect = 2e-38
Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 53 RSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFP 112
R + ++KI+ P+ + + ++ + +++ L ++EV P
Sbjct: 2 RGSHHHHHHGSIEGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPP 61
Query: 113 VLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLK 169
E L+ +++++ F + + LR + T L RL Q S +
Sbjct: 62 SFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKD--STSAR 119
Query: 170 WFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTVLQEVLRCHSIPEHLFGKVCIIIDK 229
+ G+ +R E+ +GR E+YQ +++ G A E+L + +
Sbjct: 120 YSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEIL-------------SLALQV 166
Query: 230 IEKLPLDVIKNDLKSAG-------MSEAAIEELLRVLSIKSLTELE 268
IE+L L+ ++ SA +++ + E L +L K L+ L
Sbjct: 167 IEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLTELLLKKDLSGLN 212
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 115 bits (291), Expect = 5e-30
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE- 127
+ I +G D+ P + + + + V +G+ E+ P++E LF R GE
Sbjct: 2 KNI--QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVT 59
Query: 128 --IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG 185
+ ++Y FEDR + LRPE T R I+ G + + + +G +R+ER +G
Sbjct: 60 DVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKG 119
Query: 186 RRREHYQWNMDIIGVP 201
R R+ +Q ++ G+
Sbjct: 120 RYRQFHQLGCEVFGLQ 135
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 114 bits (289), Expect = 9e-30
Identities = 41/134 (30%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IR 129
+ P+GT+D PED + ++ + E+ + ++E+ P+ ES LF R G+ ++
Sbjct: 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQ 61
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKG--KSVSLPLKWFAVGQCWRYERMTRGRR 187
++Y F+D+G+R + LRPE T ++ R I+ + + P+K + G +RYER +GR
Sbjct: 62 KEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRY 121
Query: 188 REHYQWNMDIIGVP 201
R+ Q+ ++ IG
Sbjct: 122 RQFNQFGVEAIGAE 135
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 114 bits (287), Expect = 2e-29
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IR 129
+GT+D +++R+ + ++V G E+ P+ E +F + G +R
Sbjct: 3 ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVR 62
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMTRGRRR 188
+++ F+DRG R + LRPE T ++ R ++ G K P++ + G +R ER +GR R
Sbjct: 63 KEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYR 122
Query: 189 EHYQWNMDIIGVP 201
+ +Q N + +G
Sbjct: 123 QFHQVNYEALGSE 135
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 110 bits (278), Expect = 4e-28
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
Query: 55 GARSLSPSPVSDDLQKID-VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPV 113
A++ P +++ +K++ + KG D P+D L + + + R +G++ + P+
Sbjct: 13 EAQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPI 72
Query: 114 LESEALFIRKAGEE---IRDQLYCFEDRGN-RRVALRPELTPSLARLVIQKGKSVSLPLK 169
+E LF R GE + ++Y F D N + LRPE T ++ R I+ P +
Sbjct: 73 VEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKR 132
Query: 170 WFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201
+ +G +R+ER RGR R+ +Q ++ +G
Sbjct: 133 LWYIGPMFRHERPQRGRYRQFHQVGVEALGFA 164
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 106 bits (266), Expect = 1e-27
Identities = 30/190 (15%), Positives = 64/190 (33%), Gaps = 38/190 (20%)
Query: 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146
+ +F + + ++ GF P LE EE F DR ++R
Sbjct: 4 LDFEK-VFSFYSKATK-KGFSPFFVPALEK--------AEEP--AGNFFLDRKGNLFSIR 51
Query: 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTVL 206
+ T ++ + +K + +RY YQ ++ + ++
Sbjct: 52 EDFTKTVLNHRKRYSP--DSQIKVWYADFVYRYS---GSDLVAEYQLGLEKVPRNSLDDS 106
Query: 207 QEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAG--------MSEAAIEELLRV 258
EVL II++ + + ++ G + + E++L +
Sbjct: 107 LEVLE-------------IIVESASEFFEGPVIVEIGHTGVYEDLLKEIPKDLHEKVLNL 153
Query: 259 LSIKSLTELE 268
+ K+L E+E
Sbjct: 154 IDTKNLAEIE 163
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 55.6 bits (134), Expect = 3e-09
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 75 PPKGTRDFP----PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG---EE 127
+G R + L + GF +V P + +++ +
Sbjct: 54 MSQGKRHLEQLRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHP 113
Query: 128 IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRR 187
+ Q++ + + LRP L P+L L + + P++ F +G C+R E
Sbjct: 114 LFSQVFWLDGKK----CLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHL 169
Query: 188 REHYQWNMDIIGVP 201
E N+ +G P
Sbjct: 170 NEFTMLNLTELGTP 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 5e-08
Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 61/168 (36%)
Query: 17 LSNSSLFPRKFTV--PKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQ-KIDV 73
L N + V P P+SL L+ R D Q +I
Sbjct: 370 LVNG---AKNLVVSGP------PQSLYGLNLT---------LRKAKAPSGLD--QSRI-- 407
Query: 74 NP-----PKGTRDF-P---PEDMRLRNWLFHNFQEVSRLFG--FEEVDFPVLESEALFIR 122
P K + F P P FH S L + ++ ++++ F
Sbjct: 408 -PFSERKLKFSNRFLPVASP---------FH-----SHLLVPASDLINKDLVKNNVSF-- 450
Query: 123 KAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKW 170
++I+ +Y D + R L ++ + +I LP+KW
Sbjct: 451 -NAKDIQIPVYDTFDGSDLR-VLSGSISERIVDCII------RLPVKW 490
Score = 43.9 bits (103), Expect = 4e-05
Identities = 48/245 (19%), Positives = 82/245 (33%), Gaps = 71/245 (28%)
Query: 74 NPPKGTRDFPPEDMR-LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQL 132
NP T F E + +R N+ + FE + L++E +F ++ E
Sbjct: 1668 NPVNLTIHFGGEKGKRIR----ENYSAMI----FETIVDGKLKTEKIF-KEINEHSTS-- 1716
Query: 133 YCFE-DRG------NRRVALRPELTPSLARLVIQKGKSVSLPLKWFA---VGQCWRY--- 179
Y F ++G + AL A K K + FA +G+ Y
Sbjct: 1717 YTFRSEKGLLSATQFTQPAL---TLMEKAAFEDLKSKGLIPADATFAGHSLGE---YAAL 1770
Query: 180 ----ERMT----------RGR-------RREHYQWNMDIIGV-P---AVTVLQEVLR--C 212
+ M+ RG R E + N +I + P A + QE L+
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 213 HSIPEHLFGKVCI---------IIDKI--EKLPLDVIKNDLKSAGMSEAAIEELLRVLSI 261
+ + V I + + LD + N L + + I EL + LS+
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYV--AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 262 KSLTE 266
+ +
Sbjct: 1889 EEVEG 1893
Score = 36.2 bits (83), Expect = 0.011
Identities = 56/292 (19%), Positives = 91/292 (31%), Gaps = 115/292 (39%)
Query: 12 MKPLFLSNSSLFPRKFTVPKEY-LLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQK 70
+PL LS+ SL E+ LL P + AS Q + + K
Sbjct: 6 TRPLTLSHGSL---------EHVLLVPTAS--FFIAS-Q--------------LQEQFNK 39
Query: 71 IDVNPPKGTRDFPPED-----MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG 125
I P T F +D L V + G+ V V S+ +
Sbjct: 40 ILPEP---TEGFAADDEPTTPAEL----------VGKFLGY--VSSLVEPSKV---GQFD 81
Query: 126 EEIRDQLYCFED---RGN------------------------------RRVALRPELTPS 152
+ + L FE+ GN R +A RP S
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 153 LARLV--IQKGKSVSLPLKWFAV--GQ-----CWR-----YERMTRGRRREHYQWNM-DI 197
+ L + +G + + A+ GQ + Y+ Y + D+
Sbjct: 142 NSALFRAVGEGNA-----QLVAIFGGQGNTDDYFEELRDLYQ---------TYHVLVGDL 187
Query: 198 IGVPAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKND-LKSAGMS 248
I + L E++R E +F + I++ +E P + D L S +S
Sbjct: 188 IKF-SAETLSELIRTTLDAEKVFTQGLNILEWLEN-PSNTPDKDYLLSIPIS 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.012
Identities = 37/261 (14%), Positives = 69/261 (26%), Gaps = 85/261 (32%)
Query: 83 PPEDMRLRN--WLFHNFQE--VSRLFG-FEEVDFPVLES-------EALFIRKAGEEIRD 130
W + QE V + +++ L S + + + E RD
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 131 QLY----CFEDRGNRRVALRPELTPSLARL------VIQ----KGKSV-------SLPLK 169
+LY F R+ +L +L L +I GK+ S ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 170 --------WFAVGQC----------------------WRYERMTRGRRREH--YQWNMDI 197
W + C R + + + R H +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 198 IGVP----AVTVLQEVLRCHSIPEHL--FGKVC---------IIIDKIEKLPLDVIKNDL 242
+ + VL V + F C + D + I D
Sbjct: 238 LKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 243 KSAGMSEAAIEELL-RVLSIK 262
S ++ ++ LL + L +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCR 314
Score = 34.1 bits (77), Expect = 0.049
Identities = 37/279 (13%), Positives = 77/279 (27%), Gaps = 84/279 (30%)
Query: 5 HSSLSFYMKPLFLSNSSL--FPRKFTVPKEYLLNPRSLCALSSASNQNGGRS---GARSL 59
+S S + + L S+ R+ K Y L L + N + + L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 60 SPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL 119
+ Q D T + + E ++L
Sbjct: 270 L---TTRFKQVTDFLSAATTTHISLDHHSM---------------TLTPD-----EVKSL 306
Query: 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELT---PSLARLVIQKGKSVS-LPLKWFAVGQ 175
++ +D L E+ P +I +S+ W
Sbjct: 307 LLKYLDCRPQD--------------LPREVLTTNP-RRLSII--AESIRDGLATW----D 345
Query: 176 CWRY---ERMTRGRRREHYQWNMDIIGVPAVTVLQ-EVLRCHSIPEHLFGKVCIIIDKIE 231
W++ +++T II ++ VL+ R +F +
Sbjct: 346 NWKHVNCDKLTT------------IIES-SLNVLEPAEYR------KMF-DRLSVFPPSA 385
Query: 232 KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGW 270
+P ++ L + ++ + ++ L SL +E
Sbjct: 386 HIPTILLS--LIWFDVIKSDVMVVVNKLHKYSL--VEKQ 420
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 35.3 bits (81), Expect = 0.019
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 13/131 (9%)
Query: 63 PVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQ---EVSRLF---GFEEVDFPVLES 116
V D + P + ++ + + ++ +D L
Sbjct: 107 AVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVL 166
Query: 117 E---ALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPELTPSLARLVIQKGKSVSLPLK 169
E AL I + + D F+D + ++ LR +T V LP K
Sbjct: 167 EISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFK 226
Query: 170 WFAVGQCWRYE 180
F++ +C+R E
Sbjct: 227 LFSIDRCFRRE 237
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 34.2 bits (78), Expect = 0.043
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 98 QEVSRLFGFEEVDFPVLESE---ALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPELT 150
Q++ + +D L E AL I + + D F+D + ++ LR +T
Sbjct: 148 QKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYE 180
V LP K F++ +C+R E
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRRE 237
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 34.1 bits (78), Expect = 0.050
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLE---SEALFIRK--AGEEIRDQLYC 134
+ E + R QE+ + E+D L +E L + A + + +
Sbjct: 111 KIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPE 170
Query: 135 FEDRG--NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE 180
F++ + + LR +T + + LP+K F++ +C+R E
Sbjct: 171 FKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRRE 218
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 33.0 bits (75), Expect = 0.096
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 98 QEVSRLFGFEEVDFPVLESE---ALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPELT 150
Q++ + +D L E AL I + + D F+D + ++ LR +T
Sbjct: 148 QKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYE 180
V LP K F++ +C+R E
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRRE 237
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 32.6 bits (74), Expect = 0.14
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 98 QEVSRLFGFEEVDFPVLESE---ALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPELT 150
Q++ + +D L E AL I + + D F+D + ++ LR +T
Sbjct: 148 QKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYE 180
V LP K F++ +C+R E
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRRE 237
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 30.7 bits (69), Expect = 0.58
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 97 FQEVSRLFGFEEVDFPVLE---SEALFIRKA--GEEIRDQLYCFEDRG--NRRVALRPEL 149
+EV L+ +D L ++AL + + + F+D + + LR +
Sbjct: 140 LREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHM 199
Query: 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYE 180
T + K LPLK F++ +C+R E
Sbjct: 200 TSGWFITLSSLIKKRKLPLKLFSIDRCFRRE 230
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.4
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 16/40 (40%)
Query: 115 ESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLA 154
E +A ++K + +LY + P+LA
Sbjct: 18 EKQA--LKKL--QASLKLYA------------DDSAPALA 41
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 29.1 bits (65), Expect = 1.6
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 122 RKAGEEIRDQLYCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWRYE 180
+ G + Y ++ R+ LR T + AR L K P+K+F++ + +R E
Sbjct: 301 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNE 360
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural
genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens}
SCOP: b.1.18.1
Length = 95
Score = 26.4 bits (58), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 198 IGVPAVTVLQEVLRCHSIPEHLFGKV 223
I VPA + VLRC+ P H G V
Sbjct: 45 ISVPASLIQPGVLRCY-CPAHDTGLV 69
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 27.3 bits (60), Expect = 5.8
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 27/128 (21%)
Query: 93 LFHNFQEVSRLFGFEEVDFPVLESEALFIR------------------KAGEEIRDQLYC 134
R G E + FP + S A + EI +
Sbjct: 69 RLAALITSHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSR 128
Query: 135 FEDRGNRRVALRPE---LTPS----LARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRR 187
F+ G+ +L P L+P+ + + +G L++ C+R E ++
Sbjct: 129 FDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRRE-PSKHLD 187
Query: 188 REHYQWNM 195
R + M
Sbjct: 188 RLQ-SFRM 194
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 27.3 bits (61), Expect = 5.9
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 166 LPLKWFAVGQCWRYER------MTRGR 186
LP K F G+ RYE + R R
Sbjct: 132 LPFKVFEFGRVHRYEPSGSIYGLLRVR 158
>2de6_A Terminal oxygenase component of carbazole; electron transfer
complex, rieske non-heme iron oxygenase system, terminal
oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2
d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Length = 392
Score = 27.3 bits (60), Expect = 6.6
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 79 TRDFPPEDMRL-RNWLFHNFQEVSRLFGFEEVDFPVLES 116
+ ++ R F + + L GF D E+
Sbjct: 301 GKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREA 339
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 26.7 bits (59), Expect = 7.6
Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 8/80 (10%)
Query: 137 DRGNR---RVALR--PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHY 191
G V + L + +I P W + + GR+
Sbjct: 95 SHGCWVNIDVCEQLGAAR---LPKTIIIDWLLQPHPGFWQQLAEGQHPTEYVAGRQSFFD 151
Query: 192 QWNMDIIGVPAVTVLQEVLR 211
+W + L+ +
Sbjct: 152 EWAETTDNADVLNHLRNEMP 171
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 26.5 bits (59), Expect = 7.8
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
+L+ + PP R+ +D + W
Sbjct: 12 ELEDLQKKPPPYLRNLSSDDANVLVW 37
>2kd1_A DNA integration/recombination/invertion protein; protein structure
initiative, structural genomics, unknown function,
PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Length = 118
Score = 25.7 bits (57), Expect = 9.8
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 207 QEVLRCHSIPEHLFGKVCIIIDKIEKL-PLDVIK--NDLKSAGMSEAAIEELLRVLS 260
+ L IP G + K+ KL L + N L+ G+ IE++++V+
Sbjct: 32 KGYLNSRIIPS--LGNI-----KLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIR 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,342,287
Number of extensions: 270036
Number of successful extensions: 669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 42
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)