RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024194
(271 letters)
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 105 bits (263), Expect = 2e-27
Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 9/208 (4%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 1 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 60
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
++Y FEDR + LRPE T R I+ G + + + +G +R+ER +GR R
Sbjct: 61 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 120
Query: 189 EHYQWNMDIIGVPAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSA--- 245
+ +Q ++ G+ + E++ + G + ++ + + + + A
Sbjct: 121 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVA 180
Query: 246 ---GMSEAAIEELLRVLSIKSLTELEGW 270
E E+ R + L L+
Sbjct: 181 FLEQHKEKLDEDCKRRMYTNPLRVLDSK 208
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 103 bits (257), Expect = 2e-26
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
++ + +G RDF PEDM + ++F +E + FGF +DFP LE L+ K+GEE+
Sbjct: 1 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELL 60
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRRE 189
Q Y F D+G R V L PE TPS R+V + PL+W++ + WRYE GR RE
Sbjct: 61 QQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQR-PLRWYSFPKVWRYEEPQAGRYRE 119
Query: 190 HYQWNMDIIGVPAVTV-LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKS 244
HYQ+N DI G + + + SI + L + I + ++ I + S
Sbjct: 120 HYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTS 175
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 101 bits (251), Expect = 1e-25
Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQL 132
P+GT+D PED + ++ + E+ + ++E+ P+ ES LF R G+ ++ ++
Sbjct: 5 PRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEM 64
Query: 133 YCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL--PLKWFAVGQCWRYERMTRGRRREH 190
Y F+D+G+R + LRPE T ++ R I+ + P+K + G +RYER +GR R+
Sbjct: 65 YTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQF 124
Query: 191 YQWNMDIIG 199
Q+ ++ IG
Sbjct: 125 NQFGVEAIG 133
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 94.3 bits (233), Expect = 3e-23
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQ 131
+GT+D +++R+ + ++V G E+ P+ E +F + G +R +
Sbjct: 4 AVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKE 63
Query: 132 LYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLK-WFAVGQCWRYERMTRGRRREH 190
++ F+DRG R + LRPE T ++ R ++ G V + G +R ER +GR R+
Sbjct: 64 MFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQF 123
Query: 191 YQWNMDIIGVPAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAG 246
+Q N + +G P V ++ + +++L L +K L S G
Sbjct: 124 HQVNYEALG-------------SENPILDAEAVVLLYECLKELGLRRLKVKLSSVG 166
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 87.4 bits (215), Expect = 1e-20
Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQL 132
P+ + + ++ + +++ L ++EV P E L+ ++++
Sbjct: 4 PEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKM 63
Query: 133 YCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQ 192
+ F + + LR + T L RL Q S ++ G+ +R E+ +GR E+YQ
Sbjct: 64 FQFIKHEGQSITLRYDFTLPLVRLYSQIKDST--SARYSYFGKIFRKEKRHKGRSTENYQ 121
Query: 193 WNMDIIGVPAVTVLQEVLRCH 213
+++ G A E+L
Sbjct: 122 IGIELFGESADKSELEILSLA 142
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 82.1 bits (202), Expect = 4e-19
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 15/118 (12%)
Query: 95 HNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLA 154
+F + GF P LE EE F DR ++R + T ++
Sbjct: 10 FSFYSKATKKGFSPFFVPALEK--------AEEPAGNF--FLDRKGNLFSIREDFTKTVL 59
Query: 155 RLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTVLQEVLRC 212
+ +K + +RY YQ ++ + ++ EVL
Sbjct: 60 NHRKRYSP--DSQIKVWYADFVYRYS---GSDLVAEYQLGLEKVPRNSLDDSLEVLEI 112
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 45.6 bits (107), Expect = 2e-06
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 71 IDVNPP-KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG---- 125
DV P KG + P ++R + F + + G +E FP+L E L ++A
Sbjct: 18 YDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKG 77
Query: 126 --EEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERM 182
+E+ + + + + ++ALRP + ++ K LP+K + + +RYE
Sbjct: 78 FEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK 137
Query: 183 TRG---RRREHYQWNMDIIGVP 201
R RE +
Sbjct: 138 HTRPLIRLREIMTFKEAHTAHS 159
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 37.6 bits (86), Expect = 8e-04
Identities = 28/166 (16%), Positives = 50/166 (30%), Gaps = 9/166 (5%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA----- 124
D P +GT P + + + + G + FP+ + ++A
Sbjct: 23 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEG 82
Query: 125 -GEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERM 182
E+ + + +A+RP + + + +S LP G R+E
Sbjct: 83 FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR 142
Query: 183 --TRGRRREHYQWNMDIIGVPAVTVLQEVLRCHSIPEHLFGKVCII 226
R E +EV R SI L + I
Sbjct: 143 TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAI 188
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 32.8 bits (74), Expect = 0.033
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146
+RLR+ + + GF +V+ P L + E RD L + AL
Sbjct: 40 LRLRHRVIKAIWDFLDREGFVQVETPFL------TKSTPEGARDFLVPYRHEPGLFYALP 93
Query: 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201
L+ V+ ++F + +C+R E + R+ + Q ++++ V
Sbjct: 94 QSPQLFKQMLM------VAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE 142
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 31.7 bits (71), Expect = 0.096
Identities = 23/152 (15%), Positives = 55/152 (36%), Gaps = 19/152 (12%)
Query: 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146
++ R + + GF +++ P+L + E RD L + AL
Sbjct: 32 LKTRAKITSLVRRFMDDHGFLDIETPML------TKATPEGARDYLVPSRVHKGKFYALP 85
Query: 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTVL 206
L++ S +++ + +C+R E + R+ E Q +++ + A
Sbjct: 86 QSPQLFKQLLMM------SGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAP--- 136
Query: 207 QEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVI 238
+ + E L + + + ++ V+
Sbjct: 137 ----QVREVMEALVRHLWLEVKGVDLGDFPVM 164
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 31.2 bits (70), Expect = 0.11
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 6/153 (3%)
Query: 84 PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRV 143
+ + L + + + ++EV P + L+ + + NR
Sbjct: 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREY 86
Query: 144 ALRPELTPSLARLVIQKGKSVS-LPLKWFAVGQCWRYERMTRG----RRREHYQWNMDII 198
++P P ++ Q KS LPL+ G C R E R R Q + I
Sbjct: 87 CIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIF 146
Query: 199 GVPAVTVLQEVLRCHSIPEHLFGKVCIIIDKIE 231
+ EV C + ++ ++
Sbjct: 147 CTEE-QIRDEVNGCIRLVYDMYSTFGFEKIVVK 178
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 84
Score = 28.1 bits (63), Expect = 0.26
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 21 SLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDL 68
L ++ T P+ Y P +L AL A NQ R +L+ V L
Sbjct: 17 CLIEKQATNPETY---PLTLNALVIACNQKTSRDPVMNLTQGQVGQSL 61
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 29.7 bits (66), Expect = 0.36
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 25/145 (17%)
Query: 98 QEVSRLF---GFEEVDFPVLESE-----ALFIRK--AGEEIRDQLYCFEDRG-------- 139
+E+ +F G++ V+ P +ESE AL I + ++ D + +
Sbjct: 24 RELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGE 83
Query: 140 --NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDI 197
R+ LR +P R ++ P + G+ +R+E+ +Q +
Sbjct: 84 EVEGRLLLRTHTSPMQVRYMVAHTP----PFRIVVPGRVFRFEQTDATHEAVFHQLEGLV 139
Query: 198 IGVPAVTVLQEVLRCHSIPEHLFGK 222
+G + + + + + LFG
Sbjct: 140 VG-EGIAMAHLKGAIYELAQALFGP 163
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 29.7 bits (66), Expect = 0.37
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 135 FEDRGNRRVALRPELTPS--LARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQ 192
E+ LR L + + LP +G C+ + +
Sbjct: 105 LENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTR 164
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 28.7 bits (63), Expect = 0.82
Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 14/176 (7%)
Query: 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146
++R+ +F ++ GF E+ P + I A E + + +A
Sbjct: 34 FKIRSSVFKAVRDFFHENGFIEIHTPKI------IATATEGGTELFPMKYFEEDAFLAES 87
Query: 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTVL 206
P+L +++ G + + + +R E R +
Sbjct: 88 PQL---YKEIMMASGLD-----RVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEE 139
Query: 207 QEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 262
+ + +++ L ++ + L +S E+L L +
Sbjct: 140 VMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKE 195
>d1ji6a1 b.18.1.3 (A:503-652) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis, CRY3bb1 [TaxId: 1428]}
Length = 150
Score = 26.8 bits (59), Expect = 1.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 225 IIIDKIEKLPLDV 237
I IDKIE +P+ +
Sbjct: 138 IYIDKIEFIPVQL 150
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 25.9 bits (56), Expect = 4.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
+L+ + PP R+ +D + W
Sbjct: 8 ELEDLQKKPPPYLRNLSSDDANVLVW 33
>d1ciya1 b.18.1.3 (A:462-609) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Length = 148
Score = 25.5 bits (56), Expect = 5.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 225 IIIDKIEKLPLDV 237
+ ID+IE +P +V
Sbjct: 135 VYIDRIEFVPAEV 147
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 25.0 bits (54), Expect = 6.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
L +++ NP +G +D L W
Sbjct: 7 QLAELNKNPVEGFSAGLIDDNDLYRW 32
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 25.1 bits (54), Expect = 6.5
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
+L++I K R+ ++ L W
Sbjct: 7 ELEEIRKCGMKNFRNIQVDEANLLTW 32
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase
(SAMT) {Clarkia breweri [TaxId: 36903]}
Length = 359
Score = 25.3 bits (55), Expect = 8.7
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 116 SEALFIRKAGEEIRDQLYCFEDRGNRRVALRPE 148
+E L + GE I + ++ R + R
Sbjct: 312 AEPLLLDHFGEAIIEDVF---HRYKLLIIERMS 341
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 24.7 bits (53), Expect = 9.6
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 67 DLQKIDVNPPKGTRDFPPEDMRLRNW 92
L + P G +D + W
Sbjct: 8 QLADMRRVPVDGFSAGLVDDNDIYKW 33
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp.,
UC5319 [TaxId: 1931]}
Length = 311
Score = 25.1 bits (54), Expect = 9.6
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 177 WRYERMTRGRRREHYQWNMDIIGVPAVTVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLD 236
R+ ++ IGV L E +P +F ++ + ++ +D
Sbjct: 154 SRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFD--SAVMSAMLQIAVD 211
Query: 237 VI--KNDLKS 244
V ND+ S
Sbjct: 212 VNLLLNDIAS 221
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,074,179
Number of extensions: 53015
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 25
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)