Query 024195
Match_columns 271
No_of_seqs 180 out of 1488
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 7.3E-32 2.5E-36 224.2 16.3 179 38-242 2-181 (188)
2 4fvg_A Stomatin; mixed alpha-b 100.0 5.6E-28 1.9E-32 189.8 11.7 126 34-163 3-129 (133)
3 2rpb_A Hypothetical membrane p 99.9 1.1E-22 3.8E-27 155.1 9.1 110 45-156 3-113 (113)
4 1win_A Flotillin 2; BAND 7 dom 99.9 1.4E-22 4.9E-27 160.9 8.0 123 38-163 3-134 (143)
5 2zuo_A MVP, major vault protei 98.4 4.3E-05 1.5E-09 74.1 21.2 154 7-163 459-656 (861)
6 2xzm_4 40S ribosomal protein S 82.6 2.1 7.1E-05 36.2 5.6 92 59-155 129-228 (265)
7 3u5c_B RP10A, 40S ribosomal pr 81.2 1.5 5E-05 37.1 4.2 99 59-162 126-230 (255)
8 3v6i_B V-type ATP synthase, su 81.0 11 0.00039 26.8 8.1 20 170-189 31-50 (105)
9 3j20_A 30S ribosomal protein S 72.0 19 0.00064 29.1 8.2 80 59-152 108-189 (198)
10 2kk7_A V-type ATP synthase sub 62.7 22 0.00075 22.0 5.4 20 180-199 22-41 (52)
11 2k6i_A Uncharacterized protein 61.9 6.6 0.00023 24.9 2.8 26 172-197 21-46 (56)
12 2zuo_A MVP, major vault protei 60.1 72 0.0025 31.4 10.9 29 172-200 723-751 (861)
13 3bk6_A PH stomatin; archaea, t 54.9 11 0.00039 29.7 3.9 65 123-189 88-153 (188)
14 3v6i_A V-type ATP synthase sub 46.8 41 0.0014 26.4 6.0 12 241-254 117-128 (187)
15 3v6i_B V-type ATP synthase, su 44.8 80 0.0027 22.4 6.4 45 157-201 7-51 (105)
16 2acm_B Mucin-1; auto-catalytic 41.3 38 0.0013 21.2 3.8 24 134-157 30-53 (55)
17 2k6i_A Uncharacterized protein 40.4 38 0.0013 21.4 3.8 28 166-193 24-51 (56)
18 3v6i_A V-type ATP synthase sub 37.6 1E+02 0.0034 24.1 7.0 13 174-186 21-33 (187)
19 2kk7_A V-type ATP synthase sub 31.7 91 0.0031 19.1 5.5 20 171-190 26-45 (52)
20 4efa_E V-type proton ATPase su 26.4 2.3E+02 0.0078 22.8 7.6 11 154-164 10-20 (233)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.98 E-value=7.3e-32 Score=224.23 Aligned_cols=179 Identities=21% Similarity=0.293 Sum_probs=147.3
Q ss_pred CccceEeeeeeeeEEEecCCC-ccccCCCCEEEEEEEEEEEEcccchhhhhccCcChHHHHHHHHHHHHHhHccCCcHHH
Q 024195 38 CLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDA 116 (271)
Q Consensus 38 ~i~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~ 116 (271)
|+ +++ .++|+|.+++++++ +++|+|+++|.|+++++|||.| |.++++.+.|+...+.+++++++|+++|++++++
T Consensus 2 fi-~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IF-EKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CE-EEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ce-EEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence 45 677 68999999999988 7999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHhcHHHHHHHHHHHHHHHhhccCeEEEEEEeeecCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHH
Q 024195 117 TFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAI 196 (271)
Q Consensus 117 l~~~R~~i~~~i~~~l~~~~~~~Gi~v~~V~I~~i~~p~~v~~ai~~~~aek~~~i~~Ae~eae~~~~~Ae~~a~~~~~~ 196 (271)
++++|++|+..+++.+++.+++|||.|.+|.|++|.||+++.++|++. .+|+.++++.+++|+|++++.++.
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~--------~~Aere~~A~i~~Aege~~a~~~~ 149 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQ--------AEAERERRARITLAEAERQAAEKL 149 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999752 245566777777888887777777
Q ss_pred HhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhccCCCc
Q 024195 197 VDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTN 242 (271)
Q Consensus 197 a~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lea~~~~~~~~~~~ 242 (271)
+++.. .++.+ +.++++||||++.++++++|++
T Consensus 150 a~a~~----~~~~~----------~~~l~lr~le~~~~ia~~~~~~ 181 (188)
T 3bk6_A 150 REAAE----IISEH----------PMALQLRTLQTISDVAGDKSNL 181 (188)
T ss_dssp HHHHH----HHHHC----------TTHHHHHHTTC-----------
T ss_pred HHHHH----HHHhC----------HHHHHHHHHHHHHHHhcCCCCc
Confidence 76643 22222 3478999999999999876543
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.95 E-value=5.6e-28 Score=189.82 Aligned_cols=126 Identities=21% Similarity=0.315 Sum_probs=106.7
Q ss_pred eecCCccceEeeeeeeeEEEecCCC-ccccCCCCEEEEEEEEEEEEcccchhhhhccCcChHHHHHHHHHHHHHhHccCC
Q 024195 34 CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKL 112 (271)
Q Consensus 34 ~~~P~i~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~ 112 (271)
+..||+ +++ .++|+|.+.+++++ +++|+|++.|.|+++++|||.| |.+++|++.|++..+..++++++|+++|++
T Consensus 3 l~~P~i-d~v-~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPST-DSA-AKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCce-eEE-EEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 568999 677 58999999999988 7999999999999999999999 999999999999999999999999999999
Q ss_pred cHHHHHhcHHHHHHHHHHHHHHHhhccCeEEEEEEeeecCCChHHHHHHHH
Q 024195 113 DLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 163 (271)
Q Consensus 113 ~~~~l~~~R~~i~~~i~~~l~~~~~~~Gi~v~~V~I~~i~~p~~v~~ai~~ 163 (271)
++++++++|++|+..+++.+++.+++|||.|.+|.|+++.||+++.+||++
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~ 129 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAA 129 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999964
No 3
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.88 E-value=1.1e-22 Score=155.07 Aligned_cols=110 Identities=30% Similarity=0.436 Sum_probs=106.1
Q ss_pred eeeeeeEEEecCCC-ccccCCCCEEEEEEEEEEEEcccchhhhhccCcChHHHHHHHHHHHHHhHccCCcHHHHHhcHHH
Q 024195 45 GQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKND 123 (271)
Q Consensus 45 ~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~ 123 (271)
+++|+|.+.+++++ +++|+|+++|.|+++++|||.| |.++++++.|++..+.+.+++++|+++|++++++++++|++
T Consensus 3 ~~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~ 80 (113)
T 2rpb_A 3 DHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDI 80 (113)
T ss_dssp SCCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHH
T ss_pred eEEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHH
Confidence 36899999999998 8999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCeEEEEEEeeecCCChH
Q 024195 124 IAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (271)
Q Consensus 124 i~~~i~~~l~~~~~~~Gi~v~~V~I~~i~~p~~ 156 (271)
|++.+++.+++.+++|||.|.+|.|+++.||++
T Consensus 81 i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 81 INARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 999999999999999999999999999999974
No 4
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.87 E-value=1.4e-22 Score=160.86 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=109.2
Q ss_pred CccceEeeeeeeeEEEecCCC-ccccCCCCEEEEEEEEEEEEcccchhhhhccCcC--------hHHHHHHHHHHHHHhH
Q 024195 38 CLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSN--------TRSQIQAYVFDVIRAS 108 (271)
Q Consensus 38 ~i~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~~~~~~~~~~~~~~--------~~~~l~~~~~~~lr~~ 108 (271)
|+ +++ .++|+|++++++++ +++|+|++++.|+++++|||.++ |.++.+.+.+ .+..+.++++++||++
T Consensus 3 ~i-~~v-~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd-~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~v 79 (143)
T 1win_A 3 SG-SSG-QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTE-KELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSI 79 (143)
T ss_dssp CC-CCC-CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCC-SSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-eEE-EEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCC-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 45 577 58999999999998 69999999999999999999842 6665543322 3456888899999999
Q ss_pred ccCCcHHHHHhcHHHHHHHHHHHHHHHhhccCeEEEEEEeeecCCChHHHHHHHH
Q 024195 109 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNE 163 (271)
Q Consensus 109 i~~~~~~~l~~~R~~i~~~i~~~l~~~~~~~Gi~v~~V~I~~i~~p~~v~~ai~~ 163 (271)
+|++++++++++|++|++.+.+.+++.+++|||+|.+|+|+||.||+++.+||++
T Consensus 80 iG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~ 134 (143)
T 1win_A 80 LGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGK 134 (143)
T ss_dssp HHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.40 E-value=4.3e-05 Score=74.10 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=104.1
Q ss_pred EEEecCCceEEEEec--CeeeeeeCCcceeecCCccceEeeeeeee-----------EEEecCCC-------ccccCCCC
Q 024195 7 CIQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLR-----------VQQLDVRC-------ETKTKDNV 66 (271)
Q Consensus 7 ~~~V~~ge~~Vv~~~--G~~~~~l~pG~h~~~P~i~~~v~~~v~~r-----------~~~~~~~~-------~v~TkD~~ 66 (271)
.|.||.+.+.-|+.+ |+.+-+.||-+.++-|- +.+ ..+++. ...+...+ .|-|+|..
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd--E~f-tvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhA 535 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE--EQF-TVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHA 535 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS--CEE-CCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCC
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC--ccE-EEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCce
Confidence 356888888878765 55555889988777664 333 223321 11122222 37899999
Q ss_pred EEEEEEEEEEEEcc---cchh--hhhccCcChHHHHHHHHHHHHHhHccCCcHHHHHhcHHHH-HHHHHHH---------
Q 024195 67 FVNVVASVQYRALA---EKAS--DAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI-AKAVEEE--------- 131 (271)
Q Consensus 67 ~v~v~~~v~yrI~~---~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~R~~i-~~~i~~~--------- 131 (271)
.+.+..++.|+..- .+|. .-.|.+.|+-.-+=..+.+.+|..+++.+++++..+-..| ...++..
T Consensus 536 rL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~ 615 (861)
T 2zuo_A 536 RLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPD 615 (861)
T ss_dssp EEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC--------
T ss_pred EEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccc
Confidence 99999999999852 1233 5578899998777888899999999999999998765444 2222111
Q ss_pred ------HH--HHhhccCeEEEEEEeeecCCCh-HHHHHHHH
Q 024195 132 ------LE--KAMSHYGYEIVQTLIVDIEPDE-HVKRAMNE 163 (271)
Q Consensus 132 ------l~--~~~~~~Gi~v~~V~I~~i~~p~-~v~~ai~~ 163 (271)
.+ -.+..-|+.|.+|.|+++.|-+ ...+++++
T Consensus 616 ~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lqk 656 (861)
T 2zuo_A 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQR 656 (861)
T ss_dssp -----CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHHH
T ss_pred cccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHHH
Confidence 00 1245569999999999999765 35555544
No 6
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=82.62 E-value=2.1 Score=36.24 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=60.3
Q ss_pred ccccCCCCEEEEEEEEEEEEcc---cchhhhhccCcChHHHHHHHHHHHHHhHccCCcHHHHHh--cHHHHHHHHHHHHH
Q 024195 59 ETKTKDNVFVNVVASVQYRALA---EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELE 133 (271)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrI~~---~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~--~R~~i~~~i~~~l~ 133 (271)
+|.|+||..+.|-+..+-+-.. ....+..|.-..-...|+....+.+...++..++.+++. --+.|..+|....+
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k 208 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETK 208 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhh
Confidence 5889999999886665443322 112233343334456799999999999999999999997 34556666665555
Q ss_pred HHhhccCeEEEEEEeee---cCCCh
Q 024195 134 KAMSHYGYEIVQTLIVD---IEPDE 155 (271)
Q Consensus 134 ~~~~~~Gi~v~~V~I~~---i~~p~ 155 (271)
.. +.+.+|.|+. +..|.
T Consensus 209 ~I-----yPL~~V~IrKvKvLk~Pk 228 (265)
T 2xzm_4 209 NI-----FPLQNITIRKVKVLKRPK 228 (265)
T ss_dssp TT-----CCEEEEEEEEEEEEECCC
T ss_pred hc-----cccceEEEEEEEEEecCc
Confidence 44 4555666666 34454
No 7
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=81.23 E-value=1.5 Score=37.06 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=66.9
Q ss_pred ccccCCCCEEEEEEEEEEEEcccchhhhhccCcChHHHHHHHHHHHHHhHccCCcHHHHHhc--HHHHHHHHHHHHHHHh
Q 024195 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAM 136 (271)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~--R~~i~~~i~~~l~~~~ 136 (271)
+|.|+||..+.|-+..+-.-.+....+..|.-..-...|+....+.+...++..++.+++.. -+.|..+|..+.+..
T Consensus 126 dVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~I- 204 (255)
T 3u5c_B 126 TVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDI- 204 (255)
T ss_dssp EEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTT-
T ss_pred EEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccc-
Confidence 68999999998876654332221112223433344568999999999999999999999983 477888877777665
Q ss_pred hccCeEEEEEEeeecC---CCh-HHHHHHH
Q 024195 137 SHYGYEIVQTLIVDIE---PDE-HVKRAMN 162 (271)
Q Consensus 137 ~~~Gi~v~~V~I~~i~---~p~-~v~~ai~ 162 (271)
+.+.+|.|+.+. -|. ++..-|+
T Consensus 205 ----yPL~~V~IrKvKvLk~Pk~d~~kl~e 230 (255)
T 3u5c_B 205 ----FPLQNIHVRKVKLLKQPKFDVGALMA 230 (255)
T ss_dssp ----CCCEEEECCCEEEEECCCCCHHHHGG
T ss_pred ----cccceEEEEEEEEeecCcccHhHHHh
Confidence 345567666654 354 5555544
No 8
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=80.95 E-value=11 Score=26.79 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=9.3
Q ss_pred HHHHHHhhHHHHHHHhhhhh
Q 024195 170 LQIKRAEGEAESKYLAGLGI 189 (271)
Q Consensus 170 ~~i~~Ae~eae~~~~~Ae~~ 189 (271)
+.+..|++++.+...+|+..
T Consensus 31 ~~v~~AEAeA~ril~eAe~~ 50 (105)
T 3v6i_B 31 ERVKRAEAEAKALLEEAEAK 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444433
No 9
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.96 E-value=19 Score=29.10 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=57.7
Q ss_pred ccccCCCCEEEEEEEEEEEEcccchhhhhccCcChHHHHHHHHHHHHHhHccCCcHHHHHhc--HHHHHHHHHHHHHHHh
Q 024195 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAM 136 (271)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~l~~~--R~~i~~~i~~~l~~~~ 136 (271)
+|.|+||..+.|-+..+-. . +.-..-...|+....+.+...+++.++.+++.. -+.|+.+|..+.+..
T Consensus 108 dVkT~DGy~lRvf~i~fT~-k--------ra~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~I- 177 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAM-R--------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKI- 177 (198)
T ss_dssp EEECTTSCEEEEEEEEEEC-S--------SCCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHH-
T ss_pred EEEecCCCEEEEEEEEEEe-c--------cccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCcc-
Confidence 5889999988886664321 0 111234567999999999999999999999984 488888888888776
Q ss_pred hccCeEEEEEEeeecC
Q 024195 137 SHYGYEIVQTLIVDIE 152 (271)
Q Consensus 137 ~~~Gi~v~~V~I~~i~ 152 (271)
+.+.+|.|+.+.
T Consensus 178 ----yPl~~V~IrKvK 189 (198)
T 3j20_A 178 ----YPLRKAEIRKIK 189 (198)
T ss_dssp ----SCEEEEEEEEEE
T ss_pred ----cccceEEEEEEE
Confidence 344466665543
No 10
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=62.74 E-value=22 Score=22.01 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=7.6
Q ss_pred HHHHHhhhhhHHHHHHHHhh
Q 024195 180 ESKYLAGLGIARQRQAIVDG 199 (271)
Q Consensus 180 e~~~~~Ae~~a~~~~~~a~a 199 (271)
++..+.++|.+++..+++++
T Consensus 22 eA~~Il~eA~~eA~~Ii~eA 41 (52)
T 2kk7_A 22 EANKIISEAEAEKAKILEKA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444333
No 11
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=61.87 E-value=6.6 Score=24.91 Aligned_cols=26 Identities=27% Similarity=0.132 Sum_probs=12.9
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHH
Q 024195 172 IKRAEGEAESKYLAGLGIARQRQAIV 197 (271)
Q Consensus 172 i~~Ae~eae~~~~~Ae~~a~~~~~~a 197 (271)
|..||.+|+..+-+|+.++..+...|
T Consensus 21 IKeAE~~A~~iVeeA~~ea~~ii~eA 46 (56)
T 2k6i_A 21 VKLAEEQAVKEIEEAKNRAEQIKAEA 46 (56)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444333
No 12
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=60.06 E-value=72 Score=31.39 Aligned_cols=29 Identities=28% Similarity=0.286 Sum_probs=16.8
Q ss_pred HHHHhhHHHHHHHhhhhhHHHHHHHHhhH
Q 024195 172 IKRAEGEAESKYLAGLGIARQRQAIVDGL 200 (271)
Q Consensus 172 i~~Ae~eae~~~~~Ae~~a~~~~~~a~a~ 200 (271)
...|++.|++..+++|+.-++.+++|+|.
T Consensus 723 ~AeA~a~aea~~Ie~ea~v~~a~l~a~a~ 751 (861)
T 2zuo_A 723 KAEAESRAEAARIEGEGSVLQAKLKAQAL 751 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhHHH
Confidence 34555666666666666655555555543
No 13
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=54.87 E-value=11 Score=29.66 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHH-hhccCeEEEEEEeeecCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 024195 123 DIAKAVEEELEKA-MSHYGYEIVQTLIVDIEPDEHVKRAMNEINAEKILQIKRAEGEAESKYLAGLGI 189 (271)
Q Consensus 123 ~i~~~i~~~l~~~-~~~~Gi~v~~V~I~~i~~p~~v~~ai~~~~aek~~~i~~Ae~eae~~~~~Ae~~ 189 (271)
.+.+.+.+.+... +.=-.+.|.++.+.+ .+-+.+.+.++ .++++++.+.+|+|++++.++.|++.
T Consensus 88 ~i~~~l~~~~~~~GI~v~~v~I~~i~~p~-ev~~a~~~~~~-Aere~~A~i~~Aege~~a~~~~a~a~ 153 (188)
T 3bk6_A 88 QLQRIIDEATDPWGIKVTAVEIKDVELPA-GMQKAMARQAE-AERERRARITLAEAERQAAEKLREAA 153 (188)
T ss_dssp HHHHHHHHHTGGGTEEEEEEEEEEEEEET-THHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCeEEEEEEEEecCCCH-HHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555555543 222467888888753 45556665554 44577889999999999998887763
No 14
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=46.85 E-value=41 Score=26.43 Aligned_cols=12 Identities=8% Similarity=0.326 Sum_probs=5.3
Q ss_pred CcEEEEcCCCCchh
Q 024195 241 TNSVFIPHGPGAVK 254 (271)
Q Consensus 241 ~~~i~lp~~~~~~~ 254 (271)
..+++ .++.++.
T Consensus 117 ~~~vv--~~~~D~~ 128 (187)
T 3v6i_A 117 AKALV--ANPEDLP 128 (187)
T ss_dssp CCEEE--ECTTTHH
T ss_pred CCeEE--ECHHHHH
Confidence 34444 3455443
No 15
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=44.82 E-value=80 Score=22.44 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHhhHH
Q 024195 157 VKRAMNEINAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 201 (271)
Q Consensus 157 v~~ai~~~~aek~~~i~~Ae~eae~~~~~Ae~~a~~~~~~a~a~~ 201 (271)
+.+.+...+++-.+++..|+.++++.+.+|+++|.+....|+.-.
T Consensus 7 llk~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a 51 (105)
T 3v6i_B 7 LIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443334444567888888999988888888877655555443
No 16
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=41.31 E-value=38 Score=21.24 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=15.6
Q ss_pred HHhhccCeEEEEEEeeecCCChHH
Q 024195 134 KAMSHYGYEIVQTLIVDIEPDEHV 157 (271)
Q Consensus 134 ~~~~~~Gi~v~~V~I~~i~~p~~v 157 (271)
+....|.+.|.+|.++|+.+|..-
T Consensus 30 ~a~~~YnL~IS~vsV~dv~FPsSa 53 (55)
T 2acm_B 30 EAASRYNLTISDVSVSDVPFPFSA 53 (55)
T ss_dssp HHHHHHCCCEEEEEEECC------
T ss_pred hccccccceecceeEEeccCCCcC
Confidence 345689999999999999999653
No 17
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=40.37 E-value=38 Score=21.39 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhHHHH
Q 024195 166 AEKILQIKRAEGEAESKYLAGLGIARQR 193 (271)
Q Consensus 166 aek~~~i~~Ae~eae~~~~~Ae~~a~~~ 193 (271)
+|..+....++++.++..+.+++.+++.
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444455555544444444443
No 18
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=37.55 E-value=1e+02 Score=24.06 Aligned_cols=13 Identities=31% Similarity=0.251 Sum_probs=4.8
Q ss_pred HHhhHHHHHHHhh
Q 024195 174 RAEGEAESKYLAG 186 (271)
Q Consensus 174 ~Ae~eae~~~~~A 186 (271)
.|+.+++..+.+|
T Consensus 21 eA~~~a~~I~~eA 33 (187)
T 3v6i_A 21 EAEAKAEAVKREA 33 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 19
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=31.74 E-value=91 Score=19.10 Aligned_cols=20 Identities=25% Similarity=0.076 Sum_probs=9.7
Q ss_pred HHHHHhhHHHHHHHhhhhhH
Q 024195 171 QIKRAEGEAESKYLAGLGIA 190 (271)
Q Consensus 171 ~i~~Ae~eae~~~~~Ae~~a 190 (271)
-+..|+.+++..+.+|+.+|
T Consensus 26 Il~eA~~eA~~Ii~eA~~~A 45 (52)
T 2kk7_A 26 IISEAEAEKAKILEKAKEEA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444
No 20
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=26.39 E-value=2.3e+02 Score=22.83 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=6.7
Q ss_pred ChHHHHHHHHH
Q 024195 154 DEHVKRAMNEI 164 (271)
Q Consensus 154 p~~v~~ai~~~ 164 (271)
|.++.+-|++|
T Consensus 10 ~~~v~~~i~~m 20 (233)
T 4efa_E 10 PNQVNDELNKM 20 (233)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666666653
Done!