Query 024196
Match_columns 271
No_of_seqs 161 out of 345
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf7_B Protein (transcription 100.0 9.8E-36 3.3E-40 236.6 5.5 93 90-184 2-94 (95)
2 2aze_A Transcription factor DP 99.9 3.1E-27 1.1E-31 201.7 11.2 90 182-271 2-94 (155)
3 1cf7_A Protein (transcription 99.7 9.6E-18 3.3E-22 128.0 5.3 65 96-180 8-75 (76)
4 2aze_B Transcription factor E2 97.8 8.7E-05 3E-09 59.5 8.2 52 217-268 35-92 (106)
5 1sfx_A Conserved hypothetical 93.0 0.62 2.1E-05 33.6 8.5 51 98-169 16-66 (109)
6 3g3z_A NMB1585, transcriptiona 91.4 2 7E-05 32.8 10.1 51 98-169 27-77 (145)
7 1qbj_A Protein (double-strande 91.1 0.45 1.5E-05 35.8 5.8 55 104-179 12-70 (81)
8 1qgp_A Protein (double strande 90.7 0.52 1.8E-05 34.8 5.8 53 105-178 17-73 (77)
9 1ku9_A Hypothetical protein MJ 89.5 5.4 0.00019 30.0 11.0 61 98-179 22-87 (152)
10 3r0a_A Putative transcriptiona 89.2 2.5 8.6E-05 32.9 8.9 52 98-170 22-75 (123)
11 1oyi_A Double-stranded RNA-bin 88.2 0.54 1.8E-05 36.0 4.3 56 100-177 15-71 (82)
12 2oqg_A Possible transcriptiona 87.9 4.6 0.00016 29.9 9.3 43 105-169 24-66 (114)
13 2htj_A P fimbrial regulatory p 87.8 1.3 4.4E-05 31.9 6.0 53 105-178 3-59 (81)
14 1lj9_A Transcriptional regulat 87.8 7.3 0.00025 29.4 11.7 51 98-169 25-75 (144)
15 3bpv_A Transcriptional regulat 86.8 5.4 0.00019 29.8 9.3 51 98-169 25-75 (138)
16 2hr3_A Probable transcriptiona 86.2 4.3 0.00015 30.9 8.5 52 98-170 31-83 (147)
17 2a61_A Transcriptional regulat 86.1 8.6 0.00029 29.0 10.2 51 98-169 29-79 (145)
18 1ub9_A Hypothetical protein PH 85.3 1.9 6.6E-05 30.9 5.8 44 105-169 19-62 (100)
19 3cjn_A Transcriptional regulat 84.9 7.1 0.00024 30.3 9.4 51 98-169 48-98 (162)
20 3bj6_A Transcriptional regulat 84.6 11 0.00039 28.6 10.3 51 98-169 36-86 (152)
21 2qww_A Transcriptional regulat 84.6 3.3 0.00011 31.9 7.2 51 98-169 37-87 (154)
22 2nyx_A Probable transcriptiona 84.3 7.9 0.00027 30.6 9.6 51 98-169 41-91 (168)
23 3deu_A Transcriptional regulat 84.1 12 0.00041 29.7 10.6 62 98-180 49-115 (166)
24 3s2w_A Transcriptional regulat 84.1 9.6 0.00033 29.6 9.8 51 98-169 46-96 (159)
25 3ech_A MEXR, multidrug resista 83.9 7.5 0.00026 29.5 9.0 52 98-170 33-84 (142)
26 3bro_A Transcriptional regulat 83.8 10 0.00035 28.4 9.6 51 98-169 30-82 (141)
27 3kp7_A Transcriptional regulat 83.7 8.6 0.00029 29.5 9.3 52 98-171 34-85 (151)
28 3bja_A Transcriptional regulat 83.1 8.2 0.00028 28.8 8.8 51 98-169 29-79 (139)
29 3k0l_A Repressor protein; heli 82.4 15 0.0005 28.7 10.3 61 98-179 42-106 (162)
30 1okr_A MECI, methicillin resis 82.2 6.2 0.00021 29.5 7.8 65 98-179 6-72 (123)
31 1p6r_A Penicillinase repressor 82.0 3.8 0.00013 29.1 6.2 61 99-176 6-68 (82)
32 2fbh_A Transcriptional regulat 82.0 14 0.00048 27.7 10.9 52 98-170 33-85 (146)
33 2rdp_A Putative transcriptiona 81.9 12 0.00043 28.3 9.5 51 98-169 38-88 (150)
34 3cuo_A Uncharacterized HTH-typ 81.9 3.1 0.00011 29.8 5.7 44 105-169 27-70 (99)
35 3oop_A LIN2960 protein; protei 81.8 9.7 0.00033 28.9 8.9 51 98-169 33-83 (143)
36 1s3j_A YUSO protein; structura 81.6 9.4 0.00032 29.2 8.8 51 98-169 33-83 (155)
37 2nnn_A Probable transcriptiona 81.3 8.6 0.00029 28.7 8.3 50 99-169 35-84 (140)
38 2fu4_A Ferric uptake regulatio 81.2 2.4 8.4E-05 30.2 4.9 49 105-169 20-70 (83)
39 4hbl_A Transcriptional regulat 81.1 9.8 0.00034 29.3 8.8 61 98-179 37-101 (149)
40 2fa5_A Transcriptional regulat 80.9 11 0.00036 29.2 8.9 52 98-170 45-96 (162)
41 2eth_A Transcriptional regulat 80.6 11 0.00038 29.0 8.9 51 98-169 40-90 (154)
42 3nrv_A Putative transcriptiona 80.4 12 0.00042 28.4 9.0 52 98-170 36-87 (148)
43 2d1h_A ST1889, 109AA long hypo 79.7 12 0.00041 26.7 8.3 52 98-170 17-69 (109)
44 2fbi_A Probable transcriptiona 79.5 13 0.00043 27.8 8.7 51 98-169 32-82 (142)
45 3tgn_A ADC operon repressor AD 79.4 18 0.00061 27.3 11.1 52 96-169 32-83 (146)
46 2gxg_A 146AA long hypothetical 79.2 18 0.00061 27.2 10.8 50 98-169 33-82 (146)
47 1tbx_A ORF F-93, hypothetical 79.1 4.2 0.00014 29.6 5.7 55 98-169 4-58 (99)
48 3eco_A MEPR; mutlidrug efflux 78.4 19 0.00064 27.0 9.4 51 98-169 27-79 (139)
49 3jth_A Transcription activator 77.8 3.2 0.00011 30.3 4.7 49 106-176 27-77 (98)
50 3boq_A Transcriptional regulat 77.4 8.7 0.0003 29.6 7.4 52 98-170 43-95 (160)
51 2cfx_A HTH-type transcriptiona 76.6 4.8 0.00016 31.7 5.7 47 102-169 5-51 (144)
52 1jgs_A Multiple antibiotic res 76.1 13 0.00046 27.7 7.9 51 98-169 30-80 (138)
53 3e6m_A MARR family transcripti 75.3 12 0.0004 29.2 7.7 52 98-170 49-100 (161)
54 2p5v_A Transcriptional regulat 75.2 5.4 0.00018 31.9 5.8 49 100-169 8-56 (162)
55 2kko_A Possible transcriptiona 75.0 4.9 0.00017 30.4 5.2 50 106-177 29-80 (108)
56 3cdh_A Transcriptional regulat 74.7 6 0.0002 30.5 5.8 52 98-170 39-90 (155)
57 2bv6_A MGRA, HTH-type transcri 74.4 3.9 0.00013 31.0 4.5 51 98-169 33-83 (142)
58 3pqk_A Biofilm growth-associat 74.2 15 0.00053 26.8 7.7 50 106-177 27-78 (102)
59 3bdd_A Regulatory protein MARR 74.2 13 0.00043 27.8 7.4 50 99-169 28-77 (142)
60 1r1u_A CZRA, repressor protein 74.0 7.1 0.00024 29.1 5.8 50 106-177 30-81 (106)
61 2cg4_A Regulatory protein ASNC 73.7 6.3 0.00021 31.1 5.7 49 100-169 6-54 (152)
62 2dbb_A Putative HTH-type trans 73.1 5.2 0.00018 31.5 5.1 49 100-169 7-55 (151)
63 1u2w_A CADC repressor, cadmium 73.1 3.2 0.00011 32.1 3.8 43 106-169 46-88 (122)
64 1i1g_A Transcriptional regulat 72.7 5.7 0.00019 30.6 5.2 46 104-170 6-51 (141)
65 1y0u_A Arsenical resistance op 72.5 5.4 0.00019 29.2 4.8 44 106-172 35-78 (96)
66 2heo_A Z-DNA binding protein 1 71.7 8 0.00027 27.2 5.3 49 103-172 11-60 (67)
67 2ia0_A Putative HTH-type trans 71.7 7.3 0.00025 32.0 5.9 50 99-169 14-63 (171)
68 2pn6_A ST1022, 150AA long hypo 71.7 5.1 0.00017 31.4 4.7 45 104-169 5-49 (150)
69 2cyy_A Putative HTH-type trans 71.6 6.5 0.00022 31.1 5.4 49 100-169 5-53 (151)
70 2w25_A Probable transcriptiona 70.6 8.3 0.00028 30.3 5.8 49 100-169 5-53 (150)
71 2o03_A Probable zinc uptake re 70.1 6.9 0.00024 30.7 5.2 56 98-169 5-63 (131)
72 3hsr_A HTH-type transcriptiona 70.1 14 0.00048 28.1 6.9 52 98-170 32-83 (140)
73 3qph_A TRMB, A global transcri 69.9 3 0.0001 38.4 3.4 35 148-182 43-78 (342)
74 2fe3_A Peroxide operon regulat 69.2 9.7 0.00033 30.4 6.0 56 98-169 16-74 (145)
75 3jw4_A Transcriptional regulat 69.0 19 0.00064 27.5 7.4 52 98-170 37-90 (148)
76 2lkp_A Transcriptional regulat 68.7 17 0.00058 27.2 7.0 51 105-177 35-87 (119)
77 3eyy_A Putative iron uptake re 68.6 7.7 0.00026 31.1 5.3 56 98-169 13-70 (145)
78 3u2r_A Regulatory protein MARR 68.2 31 0.0011 26.9 8.7 51 98-169 42-94 (168)
79 2frh_A SARA, staphylococcal ac 67.6 17 0.00059 27.6 6.9 61 98-179 33-99 (127)
80 2fbk_A Transcriptional regulat 66.8 13 0.00045 29.7 6.3 52 98-170 65-119 (181)
81 1xmk_A Double-stranded RNA-spe 66.0 15 0.0005 27.5 6.0 59 99-177 8-67 (79)
82 1r7j_A Conserved hypothetical 66.0 26 0.00088 26.3 7.5 28 148-175 31-58 (95)
83 1j5y_A Transcriptional regulat 65.5 11 0.00037 31.2 5.7 52 106-178 25-78 (187)
84 1xn7_A Hypothetical protein YH 65.1 9.5 0.00032 28.3 4.7 45 105-170 5-49 (78)
85 2e1c_A Putative HTH-type trans 64.7 11 0.00037 31.0 5.5 50 99-169 24-73 (171)
86 2pg4_A Uncharacterized protein 64.5 14 0.00047 26.8 5.5 51 106-177 19-73 (95)
87 2jsc_A Transcriptional regulat 64.2 11 0.00038 28.8 5.2 50 106-177 25-76 (118)
88 1mzb_A Ferric uptake regulatio 64.1 12 0.0004 29.5 5.4 56 98-169 12-71 (136)
89 2wte_A CSA3; antiviral protein 63.7 10 0.00035 33.4 5.5 52 98-170 148-199 (244)
90 2k4b_A Transcriptional regulat 63.2 5.5 0.00019 30.6 3.2 62 98-176 31-94 (99)
91 2g9w_A Conserved hypothetical 62.7 51 0.0018 25.5 9.0 54 99-169 6-60 (138)
92 3mwm_A ZUR, putative metal upt 62.6 10 0.00036 30.1 4.9 58 96-169 6-66 (139)
93 2yy0_A C-MYC-binding protein; 62.5 16 0.00056 25.5 5.3 32 184-215 18-49 (53)
94 3i4p_A Transcriptional regulat 62.2 11 0.00038 30.3 5.1 46 103-169 4-49 (162)
95 1mkm_A ICLR transcriptional re 62.1 40 0.0014 28.8 8.9 50 105-175 11-62 (249)
96 2xig_A Ferric uptake regulatio 61.6 17 0.00059 29.2 6.1 56 98-169 21-79 (150)
97 3fm5_A Transcriptional regulat 61.5 51 0.0017 25.0 9.4 51 98-169 35-86 (150)
98 3f6o_A Probable transcriptiona 61.3 13 0.00043 28.3 5.0 51 105-177 21-73 (118)
99 2k02_A Ferrous iron transport 60.2 11 0.00036 28.8 4.3 45 105-170 5-49 (87)
100 3f3x_A Transcriptional regulat 59.9 28 0.00097 26.2 6.8 49 99-169 34-82 (144)
101 3nmd_A CGMP dependent protein 59.3 30 0.001 25.9 6.5 38 186-223 20-57 (72)
102 1on2_A Transcriptional regulat 58.8 20 0.00068 27.4 5.8 46 105-171 11-56 (142)
103 2x4h_A Hypothetical protein SS 58.6 18 0.00063 27.5 5.5 39 112-171 27-65 (139)
104 1ci6_A Transcription factor AT 58.5 33 0.0011 24.4 6.5 38 186-223 24-61 (63)
105 2fsw_A PG_0823 protein; alpha- 57.8 9.8 0.00034 28.5 3.8 43 106-169 29-71 (107)
106 2w57_A Ferric uptake regulatio 57.6 14 0.00047 29.8 4.9 56 98-169 11-70 (150)
107 2jt1_A PEFI protein; solution 56.7 15 0.0005 27.2 4.5 43 106-169 8-56 (77)
108 2pex_A Transcriptional regulat 56.3 22 0.00076 27.1 5.7 52 98-170 43-94 (153)
109 2xrn_A HTH-type transcriptiona 54.6 93 0.0032 26.4 9.9 46 105-171 9-55 (241)
110 1sd4_A Penicillinase repressor 54.5 63 0.0022 23.9 9.5 62 98-176 6-69 (126)
111 1r1t_A Transcriptional repress 54.4 26 0.00089 27.1 5.8 50 106-177 50-101 (122)
112 1fxk_C Protein (prefoldin); ar 53.6 40 0.0014 26.4 6.9 56 167-222 66-125 (133)
113 2r3s_A Uncharacterized protein 52.9 14 0.00049 31.9 4.5 48 106-175 30-77 (335)
114 3dp7_A SAM-dependent methyltra 52.8 19 0.00064 32.3 5.4 49 106-175 39-88 (363)
115 4ets_A Ferric uptake regulatio 52.4 26 0.00089 28.7 5.8 56 98-169 27-87 (162)
116 2hzt_A Putative HTH-type trans 52.2 18 0.0006 27.1 4.4 43 106-169 18-60 (107)
117 2f2e_A PA1607; transcription f 51.6 25 0.00087 27.9 5.5 43 105-169 27-69 (146)
118 2o0y_A Transcriptional regulat 51.0 30 0.001 29.9 6.2 45 107-172 28-73 (260)
119 3r4k_A Transcriptional regulat 49.8 39 0.0013 29.3 6.8 44 107-171 11-55 (260)
120 2p5k_A Arginine repressor; DNA 49.6 51 0.0018 21.7 6.0 43 107-169 10-52 (64)
121 3twe_A Alpha4H; unknown functi 49.3 30 0.001 21.2 4.1 22 187-208 3-24 (27)
122 3mq0_A Transcriptional repress 48.4 26 0.00088 30.8 5.5 54 98-172 24-80 (275)
123 2g7u_A Transcriptional regulat 47.9 17 0.00059 31.3 4.2 49 106-175 18-67 (257)
124 2h09_A Transcriptional regulat 47.9 41 0.0014 26.1 6.1 47 103-170 41-87 (155)
125 3nqo_A MARR-family transcripti 47.5 1.1E+02 0.0037 24.6 9.5 50 99-169 38-89 (189)
126 2kif_A O6-methylguanine-DNA me 47.1 11 0.00039 29.8 2.7 25 102-126 3-30 (108)
127 2zdi_C Prefoldin subunit alpha 46.6 46 0.0016 26.8 6.4 58 166-223 75-136 (151)
128 2ip2_A Probable phenazine-spec 46.6 32 0.0011 29.9 5.7 48 106-175 32-80 (334)
129 3gva_A Alkyltransferase-like p 46.2 12 0.0004 30.2 2.6 25 102-126 5-32 (116)
130 3i53_A O-methyltransferase; CO 45.5 35 0.0012 29.8 5.8 50 105-176 28-78 (332)
131 1zxa_A CGMP-dependent protein 45.3 38 0.0013 25.0 5.1 36 187-222 13-48 (67)
132 1z91_A Organic hydroperoxide r 45.3 17 0.00057 27.5 3.3 51 98-169 36-86 (147)
133 1x19_A CRTF-related protein; m 45.3 27 0.00092 30.9 5.1 49 105-175 54-102 (359)
134 4aik_A Transcriptional regulat 45.2 1.1E+02 0.0037 23.9 10.7 73 98-191 27-104 (151)
135 3nmd_A CGMP dependent protein 44.7 85 0.0029 23.5 6.9 41 184-224 21-65 (72)
136 3f6v_A Possible transcriptiona 43.6 44 0.0015 26.9 5.8 50 105-176 61-112 (151)
137 2k48_A Nucleoprotein; viral pr 43.4 30 0.001 27.8 4.6 44 172-215 22-65 (107)
138 2ia2_A Putative transcriptiona 43.4 19 0.00064 31.3 3.7 49 106-175 25-74 (265)
139 1z7u_A Hypothetical protein EF 42.7 32 0.0011 25.8 4.5 44 105-169 25-68 (112)
140 2p4w_A Transcriptional regulat 42.5 1.5E+02 0.0053 24.9 11.7 43 105-169 18-60 (202)
141 1qzz_A RDMB, aclacinomycin-10- 41.8 34 0.0012 30.1 5.2 46 105-172 39-85 (374)
142 1deq_A Fibrinogen (alpha chain 39.6 1.5E+02 0.0052 28.5 9.5 18 187-204 143-160 (390)
143 1t2k_D Cyclic-AMP-dependent tr 39.3 94 0.0032 21.5 6.5 36 187-222 24-59 (61)
144 2wt7_A Proto-oncogene protein 38.7 1E+02 0.0034 21.7 6.8 36 187-222 25-60 (63)
145 1q1h_A TFE, transcription fact 38.1 30 0.001 25.5 3.7 44 106-170 22-66 (110)
146 3b73_A PHIH1 repressor-like pr 37.9 30 0.001 27.1 3.8 55 100-173 11-65 (111)
147 4b8x_A SCO5413, possible MARR- 37.8 1.3E+02 0.0045 23.1 7.6 61 98-179 31-97 (147)
148 1yyv_A Putative transcriptiona 37.5 28 0.00097 27.3 3.6 42 107-169 40-81 (131)
149 1tw3_A COMT, carminomycin 4-O- 37.2 48 0.0016 29.1 5.4 48 106-175 43-91 (360)
150 2qvo_A Uncharacterized protein 36.8 32 0.0011 24.9 3.5 42 117-179 31-73 (95)
151 1wrj_A Methylated-DNA--protein 36.5 19 0.00065 30.2 2.5 29 98-126 67-98 (156)
152 1sfu_A 34L protein; protein/Z- 36.4 29 0.00098 26.1 3.2 52 105-177 15-70 (75)
153 2fxa_A Protease production reg 35.5 39 0.0013 28.1 4.3 52 98-170 44-95 (207)
154 2xdj_A Uncharacterized protein 34.2 1.3E+02 0.0044 22.7 6.6 31 185-215 27-57 (83)
155 3dv8_A Transcriptional regulat 34.2 79 0.0027 25.0 5.8 30 147-176 179-208 (220)
156 3k2z_A LEXA repressor; winged 34.0 48 0.0016 27.3 4.6 41 109-170 16-57 (196)
157 1uly_A Hypothetical protein PH 33.6 55 0.0019 27.4 5.0 44 105-170 23-66 (192)
158 3e97_A Transcriptional regulat 32.8 51 0.0018 26.5 4.5 33 144-176 182-214 (231)
159 2xvc_A ESCRT-III, SSO0910; cel 32.3 59 0.002 23.6 4.2 41 107-168 15-56 (59)
160 1wlq_A Geminin; coiled-coil; 2 32.2 1.2E+02 0.004 23.4 6.1 37 188-224 41-80 (83)
161 2zcw_A TTHA1359, transcription 31.9 48 0.0016 26.2 4.2 34 144-177 153-186 (202)
162 3dkw_A DNR protein; CRP-FNR, H 31.5 41 0.0014 26.8 3.7 35 142-176 183-217 (227)
163 4ev0_A Transcription regulator 31.5 50 0.0017 26.1 4.2 32 145-176 171-202 (216)
164 3e6c_C CPRK, cyclic nucleotide 30.7 56 0.0019 26.8 4.5 34 144-177 184-217 (250)
165 2oz6_A Virulence factor regula 30.7 53 0.0018 25.7 4.2 33 144-176 171-203 (207)
166 3mcz_A O-methyltransferase; ad 30.1 51 0.0017 28.8 4.4 46 107-175 49-94 (352)
167 4ham_A LMO2241 protein; struct 30.1 1.9E+02 0.0064 22.3 8.3 57 118-174 15-76 (134)
168 3iwz_A CAP-like, catabolite ac 30.0 54 0.0018 26.2 4.2 33 144-176 194-226 (230)
169 1bia_A BIRA bifunctional prote 29.8 82 0.0028 28.2 5.8 53 105-178 8-62 (321)
170 3ryp_A Catabolite gene activat 29.5 56 0.0019 25.6 4.2 32 144-175 174-205 (210)
171 4a5n_A Uncharacterized HTH-typ 29.5 60 0.0021 25.9 4.3 42 107-169 31-72 (131)
172 1mgt_A MGMT, protein (O6-methy 29.4 33 0.0011 29.3 2.9 29 98-126 87-119 (174)
173 2zkz_A Transcriptional repress 28.8 99 0.0034 22.6 5.2 50 106-177 31-82 (99)
174 1fp2_A Isoflavone O-methyltran 28.6 50 0.0017 29.1 4.1 47 106-170 40-87 (352)
175 2y75_A HTH-type transcriptiona 28.4 87 0.003 23.8 5.0 35 115-170 25-59 (129)
176 3d0s_A Transcriptional regulat 28.0 64 0.0022 25.8 4.3 34 144-177 184-217 (227)
177 3la7_A Global nitrogen regulat 28.0 62 0.0021 26.6 4.3 34 143-176 199-232 (243)
178 1zg3_A Isoflavanone 4'-O-methy 27.0 46 0.0016 29.4 3.6 48 105-170 33-81 (358)
179 2bgc_A PRFA; bacterial infecti 26.9 53 0.0018 26.8 3.7 28 148-175 180-208 (238)
180 3ghg_C Fibrinogen gamma chain; 26.5 87 0.003 30.2 5.5 31 190-220 89-119 (411)
181 3g2b_A Coenzyme PQQ synthesis 26.0 56 0.0019 24.8 3.4 56 98-168 39-94 (95)
182 3kcc_A Catabolite gene activat 25.9 72 0.0025 26.6 4.4 32 144-175 224-255 (260)
183 1sfe_A ADA O6-methylguanine-DN 25.9 32 0.0011 29.4 2.2 26 101-126 95-123 (180)
184 4etp_A Kinesin-like protein KA 25.9 1.4E+02 0.0048 28.1 6.8 33 185-217 10-42 (403)
185 4emc_A Monopolin complex subun 25.6 1.9E+02 0.0064 25.3 7.0 39 187-225 22-60 (190)
186 3lst_A CALO1 methyltransferase 24.7 71 0.0024 28.2 4.3 47 107-175 47-93 (348)
187 2l5g_B Putative uncharacterize 24.2 1.7E+02 0.0058 19.9 5.1 30 184-213 8-37 (42)
188 2o8x_A Probable RNA polymerase 24.2 80 0.0028 20.8 3.6 33 114-163 29-61 (70)
189 2gau_A Transcriptional regulat 23.9 68 0.0023 25.7 3.8 35 143-177 186-220 (232)
190 3hug_A RNA polymerase sigma fa 23.9 67 0.0023 23.0 3.4 33 114-163 51-83 (92)
191 2g7h_A Methylated-DNA--protein 23.3 37 0.0013 28.9 2.1 26 101-126 78-106 (167)
192 3b02_A Transcriptional regulat 23.3 54 0.0019 25.8 3.0 34 144-177 146-179 (195)
193 3tso_C RAB11 family-interactin 23.1 2E+02 0.0069 21.7 5.8 41 188-228 17-58 (75)
194 3neu_A LIN1836 protein; struct 22.7 2.6E+02 0.0088 21.3 8.1 32 144-175 44-76 (125)
195 1zyb_A Transcription regulator 22.7 83 0.0028 25.5 4.1 31 146-176 195-225 (232)
196 2k6x_A Sigma-A, RNA polymerase 22.4 95 0.0032 22.1 3.9 42 108-166 15-57 (72)
197 1eh6_A O6-alkylguanine-DNA alk 22.2 47 0.0016 29.0 2.6 25 102-126 93-121 (207)
198 2fmy_A COOA, carbon monoxide o 21.9 1.1E+02 0.0037 24.4 4.6 33 144-176 174-207 (220)
199 3rkx_A Biotin-[acetyl-COA-carb 21.8 2E+02 0.007 25.9 6.9 56 104-180 5-64 (323)
200 1hsj_A Fusion protein consisti 21.7 99 0.0034 28.2 4.8 34 149-182 432-469 (487)
201 1fxk_C Protein (prefoldin); ar 21.6 2.2E+02 0.0075 22.0 6.2 42 187-228 3-44 (133)
202 2wvr_A Geminin; DNA replicatio 21.6 2.1E+02 0.0073 25.3 6.6 37 187-223 117-156 (209)
203 1fp1_D Isoliquiritigenin 2'-O- 21.2 57 0.002 29.1 3.0 50 106-170 48-101 (372)
204 2p7v_B Sigma-70, RNA polymeras 21.1 74 0.0025 21.5 3.0 32 115-163 24-55 (68)
205 1fxk_A Prefoldin; archaeal pro 20.8 2.5E+02 0.0087 20.6 7.1 67 150-219 30-99 (107)
206 3ajw_A Flagellar FLIJ protein; 20.8 2.9E+02 0.0099 21.2 6.8 41 186-226 82-122 (150)
207 3he4_B Synzip5; heterodimeric 20.7 1.3E+02 0.0045 20.3 4.0 15 207-221 11-25 (46)
208 2dk5_A DNA-directed RNA polyme 20.4 2.3E+02 0.0077 21.1 5.8 51 98-169 16-68 (91)
209 2gqq_A Leucine-responsive regu 20.4 27 0.00093 27.9 0.6 49 100-169 11-59 (163)
210 1ft9_A Carbon monoxide oxidati 20.1 1.1E+02 0.0039 24.3 4.4 31 144-174 170-200 (222)
211 1ku3_A Sigma factor SIGA; heli 20.1 57 0.0019 22.4 2.2 31 115-162 29-59 (73)
No 1
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=100.00 E-value=9.8e-36 Score=236.65 Aligned_cols=93 Identities=69% Similarity=1.100 Sum_probs=78.2
Q ss_pred CCCCCccccccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 90 AGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 90 ~~~~~k~~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
..+++++++||||||++|||||++++.|||+|||++||+||..+.++. +.+++||++|+|||||||||||+|||||+|
T Consensus 2 ~~~~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~--~~~~~~d~~~~rRRvYD~~NVl~a~gii~K 79 (95)
T 1cf7_B 2 SKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISK 79 (95)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCC
T ss_pred CccccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccC--ccchhcccccchhhHHHHHHHHHHhcceec
Confidence 346799999999999999999999999999999999999999876554 567899999999999999999999999999
Q ss_pred cCCceEEecCCCCCh
Q 024196 170 DKKEIQWKGLPRTSL 184 (271)
Q Consensus 170 ~Kk~i~W~G~~~~s~ 184 (271)
+||.|+|+|++.++.
T Consensus 80 ~k~~i~W~g~~~~~~ 94 (95)
T 1cf7_B 80 EKKEIKWIGLPTNSA 94 (95)
T ss_dssp CSSCEEBCCCC----
T ss_pred CCCEEEEecCCcccc
Confidence 999999999988754
No 2
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=99.94 E-value=3.1e-27 Score=201.74 Aligned_cols=90 Identities=31% Similarity=0.459 Sum_probs=83.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCcccccEEEEEcCCCcEEEEee
Q 024196 182 TSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSG---NAPSGGVALPFILVQTRPHATVEVEI 258 (271)
Q Consensus 182 ~s~~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~RNk~l~~~~---~~~~~~i~LPFIvV~T~~~t~Iecei 258 (271)
++.++|+.|++|+.+++++|++|+++|+||+.|+++|+||++||+.++.++ .+++..|+||||||+|+++|+|+|+|
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~~~~~~~~~~I~LPFIlV~T~k~t~I~ceI 81 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSI 81 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCEeecCEEEEEcCCCCEEEEEE
Confidence 578999999999999999999999999999999999999999999998643 34567899999999999999999999
Q ss_pred cCCceEEEEeecC
Q 024196 259 SEDMQLVHFDFNR 271 (271)
Q Consensus 259 seD~~~~~F~F~~ 271 (271)
|||+++||||||+
T Consensus 82 SeD~~~~~F~F~~ 94 (155)
T 2aze_A 82 SNDKFEYLFNFDN 94 (155)
T ss_dssp CTTSSEEEEEESS
T ss_pred ecCccEEEEeCCC
Confidence 9999999999985
No 3
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.70 E-value=9.6e-18 Score=127.98 Aligned_cols=65 Identities=32% Similarity=0.539 Sum_probs=56.1
Q ss_pred cccccchhHHHHHHHHHh--cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCC
Q 024196 96 SGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKK 172 (271)
Q Consensus 96 ~~~GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk 172 (271)
..++|..++.+|++.+++ .+.++++++|++|. -+.|||||||+|||||+|||+| .||
T Consensus 8 ~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~--------------------v~~kRRiYDI~NVLe~igli~K~~k~ 67 (76)
T 1cf7_A 8 HEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLA--------------------VRQKRRIYDITNVLEGIGLIEKKSKN 67 (76)
T ss_dssp TTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTT--------------------TCCTHHHHHHHHHHHHHTSEEEEETT
T ss_pred ccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhC--------------------CccceehhhHHHHHhHhcceeecCCC
Confidence 347999999999999998 67899999999981 0279999999999999999999 899
Q ss_pred ceEEecCC
Q 024196 173 EIQWKGLP 180 (271)
Q Consensus 173 ~i~W~G~~ 180 (271)
.|+|+|++
T Consensus 68 ~~~W~G~~ 75 (76)
T 1cf7_A 68 SIQWKGVG 75 (76)
T ss_dssp EEEEC---
T ss_pred cEEEeCCC
Confidence 99999985
No 4
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=97.77 E-value=8.7e-05 Score=59.50 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHH--HHHHh-hcCC--CCCCCccc-ccEEEEEcCCCcEEEEeecCCceEEEEe
Q 024196 217 GLQNLIQ--RNERL-YSSG--NAPSGGVA-LPFILVQTRPHATVEVEISEDMQLVHFD 268 (271)
Q Consensus 217 ~lknLI~--RNk~l-~~~~--~~~~~~i~-LPFIvV~T~~~t~IeceiseD~~~~~F~ 268 (271)
.|+++.+ .|+.+ |++. ......|+ ..+|+|++|++|+++|+.+++....|++
T Consensus 35 ~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp~~~yqi~Lk 92 (106)
T 2aze_B 35 QLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSENFQISLK 92 (106)
T ss_dssp HHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEECSSCEEEEEE
T ss_pred HHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCCCcceEEEEE
Confidence 3444443 35443 5532 22234577 8899999999999999999987777664
No 5
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=93.04 E-value=0.62 Score=33.61 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=42.6
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
-||-..-..|+..+...+..|..|+|+.+ ..-+-.||.+++.|+.-|+|.+
T Consensus 16 ~~l~~~~~~il~~l~~~~~~s~~ela~~l---------------------~is~~tv~~~l~~L~~~glv~~ 66 (109)
T 1sfx_A 16 LSFKPSDVRIYSLLLERGGMRVSEIAREL---------------------DLSARFVRDRLKVLLKRGFVRR 66 (109)
T ss_dssp TCCCHHHHHHHHHHHHHCCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 45655567788888888889999999998 2457789999999999999999
No 6
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=91.35 E-value=2 Score=32.83 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=42.2
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.+|.+|+|+.+ ..-+-.|+-+++-|+.-|+|++
T Consensus 27 ~~lt~~q~~iL~~l~~~~~~t~~eLa~~l---------------------~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGSRTQKHIGEKW---------------------SLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCSBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEee
Confidence 56766667788888887889999999988 2346689999999999999998
No 7
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.13 E-value=0.45 Score=35.79 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcC---CCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCCceEEecC
Q 024196 104 SMKVCEKVESKG---RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGL 179 (271)
Q Consensus 104 S~KVcekVk~kg---~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~W~G~ 179 (271)
-.+|++.+++.+ .+|+.|+|.+| ..-|+-|...|.-|+.-|+|.+ .++.=.|.=.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L---------------------gvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~ 70 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL---------------------GTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEe
Confidence 367899999999 99999999999 2446777778888999999998 5555677533
No 8
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.73 E-value=0.52 Score=34.77 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=42.9
Q ss_pred HHHHHHHHhcC---CCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCCceEEec
Q 024196 105 MKVCEKVESKG---RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 178 (271)
Q Consensus 105 ~KVcekVk~kg---~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~W~G 178 (271)
.+|++.+++.+ .+|+.|+|..| ..-++.|.-.|.-|+.-|+|.+ ..+.=.|.=
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~L---------------------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i 73 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKL---------------------GTPKKEINRVLYSLAKKGKLQKEAGTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHH---------------------CCCHHHHHHHHHHHHHHTSEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 67888999998 99999999999 2446677777888999999999 455567753
No 9
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=89.46 E-value=5.4 Score=29.97 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=44.9
Q ss_pred cccchhHHHHHHHHH-hcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec----CC
Q 024196 98 RGLRQFSMKVCEKVE-SKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KK 172 (271)
Q Consensus 98 ~GLR~fS~KVcekVk-~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~----Kk 172 (271)
.||-.--.+|...+. ..+.+|..|+|+.+ ..-+-.|+.+++.|+..|+|++. .+
T Consensus 22 ~gl~~~~~~il~~L~~~~~~~t~~ela~~l---------------------~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 22 HGLNKSVGAVYAILYLSDKPLTISDIMEEL---------------------KISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp TTCCHHHHHHHHHHHHCSSCEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred cCCChhHHHHHHHHHHcCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 456555566666664 46788999999988 24466899999999999999983 24
Q ss_pred ceEEecC
Q 024196 173 EIQWKGL 179 (271)
Q Consensus 173 ~i~W~G~ 179 (271)
+..+...
T Consensus 81 r~~~~~~ 87 (152)
T 1ku9_A 81 KNYYEAV 87 (152)
T ss_dssp SCEEEEC
T ss_pred eEEEeec
Confidence 5566654
No 10
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.16 E-value=2.5 Score=32.92 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=42.7
Q ss_pred cccchhHHHHHHHHHhcCC--CcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGR--TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~--TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
-||-..-..|+..+...+. .|-.|+|+.| ..-+-.||.+++.|+..|+|.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l---------------------~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSL---------------------KLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEee
Confidence 4666666788888887665 8999999998 24578999999999999999983
No 11
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.22 E-value=0.54 Score=36.01 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCCceEEe
Q 024196 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 177 (271)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~W~ 177 (271)
......++++.++..+ .|+.|+|.+| ..-|.-|+-.|.-|+.-|+|.+ ..+--.|.
T Consensus 15 ~~~~~~~IL~lL~~~g-~sa~eLAk~L---------------------giSk~aVr~~L~~Le~eG~I~~~~~~PP~W~ 71 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG-ATAAQLTRQL---------------------NMEKREVNKALYDLQRSAMVYSSDDIPPRWF 71 (82)
T ss_dssp SHHHHHHHHHHHSSST-EEHHHHHHHS---------------------SSCHHHHHHHHHHHHHHTSSEECSSSSCEEE
T ss_pred hHHHHHHHHHHHHHcC-CCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEeCCCCCCcce
Confidence 3455678999999888 9999999998 1233444444556999999999 88889997
No 12
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=87.90 E-value=4.6 Score=29.87 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.+|...+ ..+..+..|+|+.| ..-+-.|+-.++.|+..|+|++
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~l---------------------~is~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATRL---------------------PVSRQAIAKHLNALQACGLVES 66 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHS---------------------SSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-HcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeeE
Confidence 4566777 56778999999887 2446779999999999999987
No 13
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.84 E-value=1.3 Score=31.90 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee----cCCceEEec
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK----DKKEIQWKG 178 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K----~Kk~i~W~G 178 (271)
.+|.+.+...+..|..|+|+.| ..-+..|+..|+.|+..|+|++ .+....|.-
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~l---------------------gvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l 59 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEAL---------------------AVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFL 59 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEE
Confidence 4577888888889999999998 2457789999999999999994 344556653
No 14
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=87.84 E-value=7.3 Score=29.42 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=41.8
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.+|..|+|+.| ..-+-.|+.+++-|+.-|+|.+
T Consensus 25 ~~lt~~~~~iL~~l~~~~~~t~~~la~~l---------------------~~s~~~vs~~l~~Le~~gli~r 75 (144)
T 1lj9_A 25 LSLTRGQYLYLVRVCENPGIIQEKIAELI---------------------KVDRTTAARAIKRLEEQGFIYR 75 (144)
T ss_dssp GTCTTTHHHHHHHHHHSTTEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCcCcCHHHHHHHH---------------------CCCHhHHHHHHHHHHHCCCEEe
Confidence 46665567778888888889999999998 2346689999999999999998
No 15
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=86.82 E-value=5.4 Score=29.84 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=42.7
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..+...+.+|..|+|+.+ ..-+-.|+.+++-|+.-|+|++
T Consensus 25 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l---------------------~~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 25 LNLTDAQVACLLRIHREPGIKQDELATFF---------------------HVDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp GTCCHHHHHHHHHHHHSTTCBHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEe
Confidence 56766667788888888999999999998 2346689999999999999998
No 16
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.20 E-value=4.3 Score=30.87 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=42.8
Q ss_pred cccchhHHHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||..--..|...+.. .+..|..++|+.+ ..-+-.|+.+++-|+.-|+|++.
T Consensus 31 ~~l~~~~~~iL~~l~~~~~~~~~~~la~~l---------------------~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 31 DPVQFSQLVVLGAIDRLGGDVTPSELAAAE---------------------RMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp CHHHHHHHHHHHHHHHTTSCBCHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHh---------------------CCChhhHHHHHHHHHHCCCEeeC
Confidence 5666666778888887 8889999999987 24567899999999999999983
No 17
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.10 E-value=8.6 Score=28.96 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=42.1
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..+...+..|..|+|+.+ ..-+-.|+.+++-|+.-|+|++
T Consensus 29 ~~l~~~~~~iL~~l~~~~~~~~~~la~~l---------------------~~s~~tvs~~l~~L~~~glv~r 79 (145)
T 2a61_A 29 FGITPAQFDILQKIYFEGPKRPGELSVLL---------------------GVAKSTVTGLVKRLEADGYLTR 79 (145)
T ss_dssp HTCCHHHHHHHHHHHHHCCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CCCchhHHHHHHHHHHCCCeee
Confidence 46666667788888888889999999988 2346689999999999999998
No 18
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=85.33 E-value=1.9 Score=30.92 Aligned_cols=44 Identities=7% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.+|+..+...+..+..|+|+.| ..-+-.||-.++.|+..|+|++
T Consensus 19 ~~iL~~L~~~~~~~~~ela~~l---------------------~is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVL---------------------DLTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhcCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEE
Confidence 4566667667789999999987 1345679999999999999997
No 19
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=84.85 E-value=7.1 Score=30.30 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=43.2
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+..+..|+|+.| ..-+-.|+-+++-|+.-|+|++
T Consensus 48 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l---------------------~is~~tvs~~l~~Le~~Gli~r 98 (162)
T 3cjn_A 48 LGLSTAKMRALAILSAKDGLPIGTLGIFA---------------------VVEQSTLSRALDGLQADGLVRR 98 (162)
T ss_dssp HTCCHHHHHHHHHHHHSCSEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHH---------------------CCChhHHHHHHHHHHHCCCEEe
Confidence 56766667888888888899999999998 2346679999999999999998
No 20
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=84.60 E-value=11 Score=28.62 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=41.9
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..+...+.+|..|+|+.+ ..-+-.|..+++-|+.-|+|++
T Consensus 36 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l---------------------~~~~~~vs~~l~~Le~~Glv~r 86 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSLTPGATAPQLGAAL---------------------QMKRQYISRILQEVQRAGLIER 86 (152)
T ss_dssp TTCCHHHHHHHHHHHHSTTEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCeee
Confidence 46666667788888888889999999988 2346688999999999999998
No 21
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=84.60 E-value=3.3 Score=31.86 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=41.4
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..+...+.+|..|+|+.+ ..-+-.|.-+++-|+.-|+|++
T Consensus 37 ~~lt~~~~~iL~~l~~~~~~t~~eLa~~l---------------------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 37 LGLTIQQLAMINVIYSTPGISVADLTKRL---------------------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HTCCHHHHHHHHHHHHSTTEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEe
Confidence 35655556788888888889999999988 1346688999999999999998
No 22
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=84.29 E-value=7.9 Score=30.63 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=42.6
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.+|..|+|+.| ..-+-.|+.+++-|+.-|+|+|
T Consensus 41 ~~lt~~~~~iL~~L~~~~~~t~~eLa~~l---------------------~is~~tvs~~l~~Le~~GlV~r 91 (168)
T 2nyx_A 41 ENITIPQFRTLVILSNHGPINLATLATLL---------------------GVQPSATGRMVDRLVGAELIDR 91 (168)
T ss_dssp SSCCHHHHHHHHHHHHHCSEEHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHh---------------------CCCHHHHHHHHHHHHHCCCEEe
Confidence 46776677788888888889999999988 2446678999999999999998
No 23
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=84.12 E-value=12 Score=29.71 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=44.7
Q ss_pred cccchhHHHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec----CC
Q 024196 98 RGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KK 172 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~----Kk 172 (271)
.||-.--..|+..+.. .+.+|..|+|+.| ..-+-.|.-+++-|+.-|+|+|. ..
T Consensus 49 ~glt~~q~~vL~~L~~~~~~~t~~eLa~~l---------------------~i~~~tvs~~l~~Le~~GlV~r~~~~~Dr 107 (166)
T 3deu_A 49 LELTQTHWVTLHNIHQLPPDQSQIQLAKAI---------------------GIEQPSLVRTLDQLEDKGLISRQTCASDR 107 (166)
T ss_dssp TTCCHHHHHHHHHHHHSCSSEEHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEEC------
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHH---------------------CCCHhhHHHHHHHHHHCCCEEeeCCCCCC
Confidence 4666666778888877 6779999999998 24467888999999999999993 33
Q ss_pred ceEEecCC
Q 024196 173 EIQWKGLP 180 (271)
Q Consensus 173 ~i~W~G~~ 180 (271)
+..+.-+.
T Consensus 108 R~~~l~LT 115 (166)
T 3deu_A 108 RAKRIKLT 115 (166)
T ss_dssp --CEEEEC
T ss_pred CeeEEEEC
Confidence 44444443
No 24
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=84.09 E-value=9.6 Score=29.61 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=42.0
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.+|..|+|+.+ ..-+-.|.-+++-|+.-|+|+|
T Consensus 46 ~~lt~~q~~vL~~l~~~~~~t~~eLa~~l---------------------~~~~~tvs~~l~~Le~~Glv~r 96 (159)
T 3s2w_A 46 YGIGSGQFPFLMRLYREDGINQESLSDYL---------------------KIDKGTTARAIQKLVDEGYVFR 96 (159)
T ss_dssp GTCCTTTHHHHHHHHHSCSEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 46666667788888888889999999998 2446778999999999999998
No 25
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=83.92 E-value=7.5 Score=29.54 Aligned_cols=52 Identities=6% Similarity=0.165 Sum_probs=42.1
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|...+...+.+|..|+|+.+ ..-+-.|.-+++-|+.-|+|+|.
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l---------------------~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQM---------------------CRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHH---------------------C---CHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHh---------------------CCCHHHHHHHHHHHHHCCCEeec
Confidence 57777778888999998999999999998 12345788899999999999993
No 26
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=83.76 E-value=10 Score=28.41 Aligned_cols=51 Identities=8% Similarity=0.086 Sum_probs=40.3
Q ss_pred cccchhHHHHHHHHHhcC--CCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKG--RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg--~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+ .+|..|+|+.+ ..-+-.|+.+++-|+.-|+|++
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~~ela~~l---------------------~~~~~tvs~~l~~Le~~Gli~r 82 (141)
T 3bro_A 30 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEF---------------------SIKSSTATVLLQRMEIKKLLYR 82 (141)
T ss_dssp TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHH---------------------CCCcchHHHHHHHHHHCCCEEe
Confidence 456555567777777766 78999999988 2346678999999999999998
No 27
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=83.68 E-value=8.6 Score=29.54 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=39.4
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecC
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~K 171 (271)
.||-.--..|...+ ..+.+|..|+|+.+ ..-+-.|.-+++-|+.-|+|++.+
T Consensus 34 ~~lt~~q~~iL~~l-~~~~~t~~eLa~~l---------------------~~~~~~vs~~l~~Le~~Glv~r~~ 85 (151)
T 3kp7_A 34 YGISAEQSHVLNML-SIEALTVGQITEKQ---------------------GVNKAAVSRRVKKLLNAELVKLEK 85 (151)
T ss_dssp HTCCHHHHHHHHHH-HHSCBCHHHHHHHH---------------------CSCSSHHHHHHHHHHHTTSEEC--
T ss_pred CCCCHHHHHHHHHH-HcCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEeeC
Confidence 35555556677778 88889999999998 133456788999999999999743
No 28
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=83.14 E-value=8.2 Score=28.78 Aligned_cols=51 Identities=4% Similarity=0.154 Sum_probs=41.7
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..+...+.++..|+|+.+ ..-+-.|+-+++-|+.-|+|++
T Consensus 29 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l---------------------~~~~~tvs~~l~~L~~~gli~r 79 (139)
T 3bja_A 29 YDISYVQFGVIQVLAKSGKVSMSKLIENM---------------------GCVPSNMTTMIQRMKRDGYVMT 79 (139)
T ss_dssp GTCCHHHHHHHHHHHHSCSEEHHHHHHHC---------------------SSCCTTHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHH---------------------CCChhHHHHHHHHHHHCCCeee
Confidence 56766667788888888899999999886 1235568889999999999998
No 29
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=82.45 E-value=15 Score=28.72 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=46.7
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec----CCc
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KKE 173 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~----Kk~ 173 (271)
.||-.--..|...+...+.+|..|+|+.+ ..-+-.|.-+++-|+.-|+|+|. ..+
T Consensus 42 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l---------------------~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 100 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERS---------------------FIKPQSANKILQDLLANGWIEKAPDPTHGR 100 (162)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHH---------------------TSCGGGHHHHHHHHHHTTSEEEEECCSSSC
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCcCeEecCCCCcCC
Confidence 46766667888888888899999999998 23455688899999999999982 345
Q ss_pred eEEecC
Q 024196 174 IQWKGL 179 (271)
Q Consensus 174 i~W~G~ 179 (271)
..+.-+
T Consensus 101 ~~~l~L 106 (162)
T 3k0l_A 101 RILVTV 106 (162)
T ss_dssp CEEEEE
T ss_pred eeEeEE
Confidence 555544
No 30
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=82.16 E-value=6.2 Score=29.50 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=49.3
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceE
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQ 175 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~ 175 (271)
.||-.--..|+..+...+..|-.|+|+.|-.+ ...-+-.||-+++.|+.-|+|++ ++.++.
T Consensus 6 ~~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~-----------------~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~ 68 (123)
T 1okr_A 6 YEISSAEWEVMNIIWMKKYASANNIIEEIQMQ-----------------KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQ 68 (123)
T ss_dssp CCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHH-----------------CCCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHhCCCcCHHHHHHHHhcc-----------------CCCcHhhHHHHHHHHHHCCCeEEEecCCeEE
Confidence 45666667788888888899999999998322 11346789999999999999999 456666
Q ss_pred EecC
Q 024196 176 WKGL 179 (271)
Q Consensus 176 W~G~ 179 (271)
+.-+
T Consensus 69 ~~~l 72 (123)
T 1okr_A 69 YYSL 72 (123)
T ss_dssp EEES
T ss_pred EEEe
Confidence 5544
No 31
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=82.05 E-value=3.8 Score=29.15 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEE
Q 024196 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (271)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W 176 (271)
+|-.--..|++.+...+..|-.|||+.|-.. ...-+-.||.+|+.|+.-|+|++ +++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~-----------------~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y 68 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKT-----------------STWSPKTIQTMLLRLIKKGALNHHKEGRVFVY 68 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHH-----------------SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhc-----------------CCccHHHHHHHHHHHHHCCCeEEEecCCEEEE
Confidence 4544556788888888999999999998321 01235679999999999999998 4555554
No 32
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.00 E-value=14 Score=27.69 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=41.7
Q ss_pred cccchhHHHHHHHH-HhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekV-k~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|+..+ ...+.+|..|+|+.+ ..-+-.|+.+++-|+.-|+|++.
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~~t~~~la~~l---------------------~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 33 LGLSQARWLVLLHLARHRDSPTQRELAQSV---------------------GVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp GCCTTTHHHHHHHHHHCSSCCBHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHh---------------------CCChhhHHHHHHHHHHCCCeeec
Confidence 45655556777778 778889999999988 24467899999999999999983
No 33
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=81.91 E-value=12 Score=28.30 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=41.7
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.+|..|+|+.| ..-+-.|+-+++.|+.-|+|++
T Consensus 38 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l---------------------~~~~~tvs~~l~~Le~~Glv~r 88 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEGDLTVGELSNKM---------------------YLACSTTTDLVDRMERNGLVAR 88 (150)
T ss_dssp SSSCHHHHHHHHHHHHHCSBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CCCchhHHHHHHHHHHCCCeee
Confidence 46666667777788778889999999987 2446779999999999999998
No 34
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=81.88 E-value=3.1 Score=29.83 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.+|...+...+..+..|+|+.| ..-+-.|+..++.|+..|+|++
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l---------------------~is~~tvs~~l~~L~~~glv~~ 70 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRIT---------------------GLSASATSQHLARMRDEGLIDS 70 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHH---------------------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEE
Confidence 4567777777789999999998 2346678999999999999998
No 35
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=81.84 E-value=9.7 Score=28.85 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=42.8
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.+|..|+|+.+ ..-+-.|+-+++-|+.-|+|+|
T Consensus 33 ~~lt~~~~~iL~~l~~~~~~t~~eLa~~l---------------------~~~~~~vs~~l~~L~~~Glv~r 83 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEANEPISQKEIALWT---------------------KKDTPTVNRIVDVLLRKELIVR 83 (143)
T ss_dssp SSSCHHHHHHHHHHHHHSSEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHH---------------------CCCHhhHHHHHHHHHHCCCeec
Confidence 56766667788888888999999999998 2346688999999999999998
No 36
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=81.63 E-value=9.4 Score=29.17 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=40.9
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..+...+..|..|+|+.| ..-+-.|+-+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l---------------------~~s~~tvs~~l~~Le~~glv~r 83 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKKHGSLKVSEIAERM---------------------EVKPSAVTLMADRLEQKNLIAR 83 (155)
T ss_dssp TTCCHHHHHHHHHHHHHSEEEHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEee
Confidence 35555556777788777888999999988 2446789999999999999998
No 37
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.29 E-value=8.6 Score=28.69 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=41.6
Q ss_pred ccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
||-.--..|+..+...+..|..|+|+.+ ..-+-.|+.+++-|+.-|+|++
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l---------------------~~~~~tvs~~l~~L~~~glv~r 84 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLT---------------------AMDAATIKGVVERLDKRGLIQR 84 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEe
Confidence 6666667788888888889999999887 2446689999999999999998
No 38
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=81.17 E-value=2.4 Score=30.18 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=37.6
Q ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 105 MKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 105 ~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
..|.+.+.+. +..|..||++.|-.... ..-+--||-.|+.|+..|+|.+
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~----------------~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGE----------------EIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTC----------------CCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCC----------------CCCHhhHHHHHHHHHHCCCeEE
Confidence 4577777664 68899999998844311 2346689999999999999998
No 39
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=81.07 E-value=9.8 Score=29.29 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=44.3
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec----CCc
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KKE 173 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~----Kk~ 173 (271)
.||-.--..|+..+...+.+|..|+|+.+ ..-+-.|..+++-|+.-|+|+|. ..+
T Consensus 37 ~~lt~~q~~iL~~l~~~~~~~~~eLa~~l---------------------~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R 95 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEENPQTLNSIGRHL---------------------DLSSNTLTPMLKRLEQSGWVKRERQQSDKR 95 (149)
T ss_dssp TTCCHHHHHHHHHHHHSSSEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHHTSEEC--------
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEeeCCCCCCcc
Confidence 46666667788888888889999999998 23466788999999999999983 244
Q ss_pred eEEecC
Q 024196 174 IQWKGL 179 (271)
Q Consensus 174 i~W~G~ 179 (271)
..+.-+
T Consensus 96 ~~~~~L 101 (149)
T 4hbl_A 96 QLIITL 101 (149)
T ss_dssp -CEEEE
T ss_pred eeeeeE
Confidence 445444
No 40
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=80.91 E-value=11 Score=29.19 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=42.2
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|...+...+..+..|+|+.| ..-+-.|+-+++-|+.-|+|++.
T Consensus 45 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l---------------------~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 45 YGMAIPEWRVITILALYPGSSASEVSDRT---------------------AMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HCCCHHHHHHHHHHHHSTTCCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEeee
Confidence 56766667788888888889999999887 23466799999999999999984
No 41
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.58 E-value=11 Score=29.05 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=42.0
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.+|..|+|+.| ..-+-.|+-+++.|+.-|+|++
T Consensus 40 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l---------------------~is~~tvs~~l~~Le~~Gli~r 90 (154)
T 2eth_A 40 SDMKTTELYAFLYVALFGPKKMKEIAEFL---------------------STTKSNVTNVVDSLEKRGLVVR 90 (154)
T ss_dssp HHSBHHHHHHHHHHHHHCCBCHHHHHHHT---------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEe
Confidence 46666667788888888889999999987 2346689999999999999998
No 42
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=80.37 E-value=12 Score=28.36 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=43.7
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
-||-.--..|...+...+.+|.+|+|+.+ ..-+-.|+-+++-|+.-|+|++.
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l---------------------~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSSASDCSVQKISDIL---------------------GLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp GTCCHHHHHHHHHHHHSSSBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHcCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEee
Confidence 47777778888999899999999999998 23466889999999999999984
No 43
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=79.68 E-value=12 Score=26.66 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=39.0
Q ss_pred cccchhHHHHHHHH-HhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekV-k~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||..-...+...+ ...+..|..|+|+.+ ..-+-.||.+++.|+..|+|++.
T Consensus 17 ~~l~~~~~~~l~~l~~~~~~~t~~ela~~l---------------------~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVEIEKPITSEELADIF---------------------KLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HTCCHHHHHHHHHHHHHCSCEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCHHHHHHHHHHHHcCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEee
Confidence 45555455554444 447889999999988 24578899999999999999983
No 44
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.55 E-value=13 Score=27.83 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=41.9
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.+|..|+|+.+ ..-+-.|+.+++-|+.-|+|++
T Consensus 32 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l---------------------~~s~~~vs~~l~~Le~~glv~r 82 (142)
T 2fbi_A 32 HGLTEQQWRVIRILRQQGEMESYQLANQA---------------------CILRPSMTGVLARLERDGIVRR 82 (142)
T ss_dssp HTCCHHHHHHHHHHHHHCSEEHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CCCHhHHHHHHHHHHHCCCEEe
Confidence 46666667788888888889999999987 2346689999999999999998
No 45
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=79.40 E-value=18 Score=27.27 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=44.2
Q ss_pred cccccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 96 SGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 96 ~~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
...||-.--..|...+...+ +|..|+|+.+ ..-+-.|.-+++-|+.-|+|++
T Consensus 32 ~~~~lt~~~~~iL~~l~~~~-~t~~eLa~~l---------------------~~s~~tvs~~l~~L~~~Glv~r 83 (146)
T 3tgn_A 32 SEVALTNTQEHILMLLSEES-LTNSELARRL---------------------NVSQAAVTKAIKSLVKEGMLET 83 (146)
T ss_dssp CSSCCCHHHHHHHHHHTTCC-CCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEC
T ss_pred hccCCCHHHHHHHHHHHhCC-CCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCeEe
Confidence 34678777788999999988 9999999998 2446678889999999999998
No 46
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=79.25 E-value=18 Score=27.18 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=39.1
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..+. .+..|..|+|+.+ ..-+-.|+-+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~-~~~~~~~ela~~l---------------------~~s~~tvs~~l~~Le~~glv~r 82 (146)
T 2gxg_A 33 LNLSYLDFLVLRATS-DGPKTMAYLANRY---------------------FVTQSAITASVDKLEEMGLVVR 82 (146)
T ss_dssp TTCCHHHHHHHHHHT-TSCBCHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHh-cCCcCHHHHHHHh---------------------CCCchhHHHHHHHHHHCCCEEe
Confidence 456555566777777 7788888888876 2446689999999999999998
No 47
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=79.07 E-value=4.2 Score=29.62 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=40.3
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+..+..|++..|... ...-+-.|+-+++-|+.-|+|+|
T Consensus 4 ~~lt~~q~~iL~~l~~~~~~~~~el~~~la~~-----------------l~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 4 TPFFYPEAIVLAYLYDNEGIATYDLYKKVNAE-----------------FPMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp CSSBCHHHHHHHHHTTCTTCBHHHHHHHHHTT-----------------SCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH-----------------cCCCHHHHHHHHHHHHHCCCEEE
Confidence 35555556777888778889999985554211 12446789999999999999999
No 48
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=78.38 E-value=19 Score=26.99 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=41.3
Q ss_pred cccchhHHHHHHHHHhcC--CCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKG--RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg--~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+ .+|..|+|+.+ ..-+-.|.-+++-|+.-|+|++
T Consensus 27 ~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l---------------------~~~~~tvs~~l~~Le~~Gli~r 79 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKAL---------------------QRTGPTVSNLLRNLERKKLIYR 79 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHh---------------------CCCcccHHHHHHHHHHCCCEee
Confidence 466666677778887765 88999999988 2346789999999999999998
No 49
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=77.84 E-value=3.2 Score=30.29 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEE
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W 176 (271)
+|...+.. +..+..|+|+.| ..-+..|+..|+.|+..|+|++ .++.+.|
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l---------------------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKL---------------------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred HHHHHHhc-CCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 45566655 888999999998 2346789999999999999987 3444444
No 50
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=77.36 E-value=8.7 Score=29.63 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=41.0
Q ss_pred cccchhHHHHHHHH-HhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekV-k~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|+..+ ...+.++..|+|+.| ..-+-.|.-+++-|+.-|+|++.
T Consensus 43 ~~l~~~~~~iL~~L~~~~~~~~~~ela~~l---------------------~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 43 TGLSLAKFDAMAQLARNPDGLSMGKLSGAL---------------------KVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HSCCHHHHHHHHHHHHCTTCEEHHHHHHHC---------------------SSCCSCHHHHHHHHHHHTSEEEC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHH---------------------CCChhhHHHHHHHHHHCCCEEee
Confidence 56776667788888 567889999999887 13345688899999999999983
No 51
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=76.62 E-value=4.8 Score=31.67 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 102 QFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 102 ~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.+-.++.+.++..+..++.|+|+.| ..-+..|...++-|+..|+|.+
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~l---------------------g~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKI---------------------KLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEE
Confidence 3456788999999999999999998 2446778888999999999987
No 52
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=76.07 E-value=13 Score=27.71 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=41.1
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+..+..++|+.+ ..-+-.|+.+++-|+.-|+|++
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~la~~l---------------------~~~~~tvs~~l~~L~~~gli~r 80 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAACITPVELKKVL---------------------SVDLGALTRMLDRLVCKGWVER 80 (138)
T ss_dssp TTSCHHHHHHHHHHHHHSSBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCHHHHHHHH---------------------CCChHHHHHHHHHHHHCCCEEe
Confidence 46666566777888777888999999877 2446689999999999999998
No 53
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=75.30 E-value=12 Score=29.22 Aligned_cols=52 Identities=10% Similarity=0.112 Sum_probs=41.4
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|+..+...+.+|..|+|+.+ ..-+-.|.-+++-|+.-|+|+|.
T Consensus 49 ~glt~~q~~vL~~l~~~~~~t~~eLa~~l---------------------~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYGELTVGQLATLG---------------------VMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp HTCCHHHHHHHHHHHHHSEEEHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEee
Confidence 45666666778888777888999999887 23466788899999999999983
No 54
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=75.21 E-value=5.4 Score=31.93 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=41.3
Q ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
|-..-.+++..++..+..++.|+|+.| ..-+..|+..++-|+.-|+|.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~l---------------------g~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERV---------------------ALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEee
Confidence 555667899999999999999999998 2346677888999999999997
No 55
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=74.95 E-value=4.9 Score=30.35 Aligned_cols=50 Identities=8% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEe
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
+|+..+. .+..+..|+|+.| ..-+..|+-.++.|+..|+|++ .++.+.|.
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~l---------------------gis~stvs~~L~~L~~~GlV~~~~~gr~~~y~ 80 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATAT---------------------GMNLTTASANLQALKSGGLVEARREGTRQYYR 80 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHHTSEEEEEETTEEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 4556665 4778999999888 2446789999999999999987 45545553
No 56
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=74.74 E-value=6 Score=30.50 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=41.4
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|...+...+.+|..|+|+.+ ..-+-.|+-+++-|+.-|+|++.
T Consensus 39 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l---------------------~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 39 QGLRVPEWRVLACLVDNDAMMITRLAKLS---------------------LMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp TTCCHHHHHHHHHHSSCSCBCHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEec
Confidence 46665566777888777888888888887 24467899999999999999983
No 57
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=74.40 E-value=3.9 Score=30.99 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=40.6
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..+...+.+|..|+|+.+ ..-+-.|+.+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l---------------------~~~~~tvs~~l~~L~~~gli~r 83 (142)
T 2bv6_A 33 YNLTYPQFLVLTILWDESPVNVKKVVTEL---------------------ALDTGTVSPLLKRMEQVDLIKR 83 (142)
T ss_dssp HTCCHHHHHHHHHHHHSSEEEHHHHHHHT---------------------TCCTTTHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHH---------------------CCChhhHHHHHHHHHHCCCEEe
Confidence 45655556788888888889999999987 1234578899999999999998
No 58
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=74.25 E-value=15 Score=26.80 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEe
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
+|...+. .+..+..|+|+.| ..-+-.|+..|..|+..|+|.+ .++.+.|.
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l---------------------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (102)
T 3pqk_A 27 MLVCTLV-EGEFSVGELEQQI---------------------GIGQPTLSQQLGVLRESGIVETRRNIKQIFYR 78 (102)
T ss_dssp HHHHHHH-TCCBCHHHHHHHH---------------------TCCTTHHHHHHHHHHHTTSEEEECSSSCCEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 4555564 4778999999988 1334578889999999999987 45555554
No 59
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=74.22 E-value=13 Score=27.81 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=40.7
Q ss_pred ccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
||-.--..|...+...+.+|..|+|+.+ ..-+-.|+.+++-|+.-|+|++
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l---------------------~is~~~vs~~l~~L~~~gli~~ 77 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERL---------------------QIDRAAVTRHLKLLEESGYIIR 77 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEe
Confidence 5555556777888888889999999987 2346678999999999999998
No 60
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=74.00 E-value=7.1 Score=29.14 Aligned_cols=50 Identities=10% Similarity=0.289 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEe
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
+|...+. .+..+..|+|+.| ..-+-.|+-.|+.|+..|+|.+ .++.+.|.
T Consensus 30 ~IL~~L~-~~~~~~~ela~~l---------------------~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~ 81 (106)
T 1r1u_A 30 RIMELLS-VSEASVGHISHQL---------------------NLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp HHHHHHH-HCCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 4555565 5778999999988 2346779999999999999987 45544543
No 61
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=73.73 E-value=6.3 Score=31.12 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
|-..-.++.+.++..+..++.|+|+.| ..-+..|+..++-|+.-|+|.+
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~l---------------------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQF---------------------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHH---------------------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHcCCcce
Confidence 555667889999999999999999998 2345667777899999999997
No 62
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.12 E-value=5.2 Score=31.49 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
|-..-.++...++..+..++.|+|+.| ..-+..|...++-|+.-|+|.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~l---------------------g~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADIL---------------------NTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHT---------------------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEE
Confidence 455567888999999999999999998 2346678888999999999986
No 63
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=73.12 E-value=3.2 Score=32.13 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
+|...+...+..+..|+|+.| ..-+-.|+-.|+.|+..|+|.+
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l---------------------~is~stvs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANIL---------------------GVTIANASHHLRTLYKQGVVNF 88 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEE
Confidence 566777767889999999998 2446789999999999999987
No 64
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=72.71 E-value=5.7 Score=30.65 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 104 SMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 104 S~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
-.++...++..+..++.|+|+.| ..-+..|+..++-|+..|+|.+.
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l---------------------g~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL---------------------GISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEecc
Confidence 35677888888999999999998 24467788889999999999874
No 65
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=72.51 E-value=5.4 Score=29.17 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCC
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk 172 (271)
+|.+.+ .+..+..|+|+.| ..-+-.||..|+.|+..|+|.+.+.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l---------------------~is~~tv~~~L~~L~~~Glv~~~~g 78 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTL---------------------SLSKKQLDYHLKVLEAGFCIERVGE 78 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHH--cCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEECC
Confidence 466666 5678888988887 2446779999999999999998444
No 66
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=71.75 E-value=8 Score=27.24 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhc-CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCC
Q 024196 103 FSMKVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172 (271)
Q Consensus 103 fS~KVcekVk~k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk 172 (271)
.-.+|.+.+... ...+..|+|+.| ..-|.-|+-+++.|+.-|+|...+.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~l---------------------glsr~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKC---------------------QVPKKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHH---------------------CSCHHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCcEecCCC
Confidence 345688888775 579999999998 2458889999999999999987433
No 67
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=71.71 E-value=7.3 Score=32.00 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=41.5
Q ss_pred ccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|-.+-.++...++..+..++.|+|+.| ..-+-.|...++-|+.-|+|.+
T Consensus 14 ~ld~~d~~IL~~L~~~~~~s~~eLA~~l---------------------glS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 14 HLDDLDRNILRLLKKDARLTISELSEQL---------------------KKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEe
Confidence 4566667899999999999999999998 2345667777899999999986
No 68
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=71.70 E-value=5.1 Score=31.43 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 104 SMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 104 S~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
-.+++..++..+..++.|+|+.| ..-+-.|+..++-|+..|+|.+
T Consensus 5 ~~~il~~L~~~~~~~~~ela~~l---------------------g~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 5 DLRILKILQYNAKYSLDEIAREI---------------------RIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCcEEE
Confidence 35678888889999999999998 2345677888999999999997
No 69
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=71.64 E-value=6.5 Score=31.05 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=40.4
Q ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
|-..-.++...++..+..++.|+|+.| ..-+..|+..++-|+..|+|.+
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~l---------------------g~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKIT---------------------GLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHH---------------------CSCHHHHHHHHHHHHHHTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEE
Confidence 445567888999999999999999998 2345667777899999999987
No 70
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=70.58 E-value=8.3 Score=30.33 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
|-..-.++...+...+..++.|+|+.| ..-+..|+..++-|+..|+|.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~l---------------------g~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRA---------------------GLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEE
Confidence 334456788889889999999999998 2345678888999999999975
No 71
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=70.09 E-value=6.9 Score=30.69 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=41.9
Q ss_pred cccchhH--HHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFS--MKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|||.-. ..|.+.+.+ .+..|-.||.+.|-.+.. ..-+--||..|+.|+..|+|.|
T Consensus 5 ~g~r~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~----------------~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 5 AGVRSTRQRAAISTLLETLDDFRSAQELHDELRRRGE----------------NIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp THHHHHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTC----------------CCCHHHHHHHHHHHHTTTSEEE
T ss_pred ccCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC----------------CCCHhhHHHHHHHHHHCCCEEE
Confidence 5677666 347788865 567888888888854421 2346789999999999999999
No 72
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=70.05 E-value=14 Score=28.06 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=41.6
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|+..+...+.+|.+|+|+.+ ..-+-.|.-+++-|+.-|+|+|.
T Consensus 32 ~glt~~q~~vL~~l~~~~~~t~~eLa~~l---------------------~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 32 YDLTYTGYIVLMAIENDEKLNIKKLGERV---------------------FLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp GTCCHHHHHHHHHSCTTCEEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHH---------------------CCChhhHHHHHHHHHHCCCeEec
Confidence 46665567777788778889999999988 23467888999999999999983
No 73
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=69.91 E-value=3 Score=38.41 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=28.6
Q ss_pred ccchhhhhhHHHHhhhccceee-cCCceEEecCCCC
Q 024196 148 KNIRRRVYDALNVLMAMDIISK-DKKEIQWKGLPRT 182 (271)
Q Consensus 148 K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~W~G~~~~ 182 (271)
..-+.+||++|+.|+..|+|++ ..+...|.-.++.
T Consensus 43 gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p~ 78 (342)
T 3qph_A 43 GIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYSPR 78 (342)
T ss_dssp TSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECCHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcCHH
Confidence 5668899999999999999999 6667777755543
No 74
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=69.22 E-value=9.7 Score=30.40 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=40.0
Q ss_pred cccchhH--HHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFS--MKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|||.-. ..|.+.+.+ .+..|-.||.+.|-.+. ...-+--||..|+.|+..|||.|
T Consensus 16 ~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~----------------~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 16 TGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKF----------------PNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGC----------------TTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC----------------CCCChhhHHHHHHHHHHCCCEEE
Confidence 4666555 347777765 56778778887773321 12336689999999999999999
No 75
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=68.95 E-value=19 Score=27.46 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=36.3
Q ss_pred cccchhHHHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|...+... +.+|..|+|+.+ ..-+-.|..+++-|+.-|+|+|.
T Consensus 37 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l---------------------~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFF---------------------GRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC---------------------------CHHHHHHHHHHTTSBCCC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHH---------------------CCChhHHHHHHHHHHHCCCEEee
Confidence 45655556677777665 788888888887 13345688899999999999984
No 76
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=68.69 E-value=17 Score=27.18 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEe
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
.+|...+.. +..+..|+|+.| ..-+--|+-.++.|+..|+|.+ .++.+.+.
T Consensus 35 ~~il~~L~~-~~~s~~ela~~l---------------------~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~ 87 (119)
T 2lkp_A 35 LMILTQLRN-GPLPVTDLAEAI---------------------GMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYS 87 (119)
T ss_dssp HHHHHHHHH-CCCCHHHHHHHH---------------------SSCHHHHHHHHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHH-CCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEE
Confidence 345555655 678899999988 2446788999999999999987 45555544
No 77
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=68.57 E-value=7.7 Score=31.12 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=39.4
Q ss_pred cccchhH--HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFS--MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS--~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|||.-. ..|.+.+.+.+..|-.||.+.|-.++ ...-+--||-.|+.|+..|||.|
T Consensus 13 ~g~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~----------------~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 13 RGYRLTPQRQLVLEAVDTLEHATPDDILGEVRKTA----------------SGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTC----------------TTCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhC----------------CCCCHhHHHHHHHHHHHCCcEEE
Confidence 5666555 34778777755777767777663221 12336689999999999999999
No 78
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=68.17 E-value=31 Score=26.92 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+... +.+|..|+|+.| ..-+-.|.-+++-|+.-|+|+|
T Consensus 42 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l---------------------~~~~~tvs~~l~~Le~~Glv~r 94 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVHPEGMATLQIADRL---------------------ISRAPDITRLIDRLDDRGLVLR 94 (168)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC------------------------CTHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHH---------------------CCChhhHHHHHHHHHHCCCEee
Confidence 45665556677777763 578888888886 1334578889999999999998
No 79
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=67.57 E-value=17 Score=27.61 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=43.5
Q ss_pred cccchhHHHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec----C
Q 024196 98 RGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----K 171 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~----K 171 (271)
.||-.--..|+..+... +..|-+|+|+.| ..-+-.|.-+++-|+.-|+|+|. .
T Consensus 33 ~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l---------------------~~~~~tvs~~l~~Le~~Glv~r~~~~~D 91 (127)
T 2frh_A 33 FSISFEEFAVLTYISENKEKEYYLKDIINHL---------------------NYKQPQVVKAVKILSQEDYFDKKRNEHD 91 (127)
T ss_dssp TCCCHHHHHHHHHHHHTCCSEEEHHHHHHHS---------------------SSHHHHHHHHHHHHHHTTSSCCBCCSSS
T ss_pred cCCCHHHHHHHHHHHhccCCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 45665556677777666 778888888876 24467889999999999999982 2
Q ss_pred CceEEecC
Q 024196 172 KEIQWKGL 179 (271)
Q Consensus 172 k~i~W~G~ 179 (271)
.+..+.-+
T Consensus 92 ~R~~~i~L 99 (127)
T 2frh_A 92 ERTVLILV 99 (127)
T ss_dssp SCCCEEEC
T ss_pred CCeeEEEE
Confidence 44444444
No 80
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=66.81 E-value=13 Score=29.70 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=39.6
Q ss_pred cccchhHHHHHHHHHhcCC---CcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGR---TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~---TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|+..+...+. +|..|+|+.| ..-+-.|+-+++-|+.-|+|++.
T Consensus 65 ~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l---------------------~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 65 SGLNAAGWDLLLTLYRSAPPEGLRPTELSALA---------------------AISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp TTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHC---------------------SCCSGGGSSHHHHHHHHTSEECC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCcCEEec
Confidence 4666666777777777654 8888888876 23455788899999999999994
No 81
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=65.98 E-value=15 Score=27.53 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=41.9
Q ss_pred ccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCCceEEe
Q 024196 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 177 (271)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~W~ 177 (271)
.......+||+.++..|..|-.|+|+.|= -.-.+.+|| .|..|+.-|+|++ .-++-.|.
T Consensus 8 ~~~~~~~~IL~~Lk~~g~~ta~eiA~~Lg----------------it~~~aVr~----hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 8 DMAEIKEKICDYLFNVSDSSALNLAKNIG----------------LTKARDINA----VLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHHHHTCCEEHHHHHHHHC----------------GGGHHHHHH----HHHHHHHTTSEEEECSSSCEEE
T ss_pred cchhHHHHHHHHHHHcCCcCHHHHHHHcC----------------CCcHHHHHH----HHHHHHHCCCEEecCCCCCCeE
Confidence 34455678999999999999999999980 111124455 4556999999997 44455775
No 82
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=65.98 E-value=26 Score=26.34 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=22.7
Q ss_pred ccchhhhhhHHHHhhhccceeecCCceE
Q 024196 148 KNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 148 K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
..--|.+-..++.|+.-|+|++..+.+.
T Consensus 31 ~ls~~~~~~~l~~L~~~GLI~~~~~~~~ 58 (95)
T 1r7j_A 31 NLSYALTGRYIKMLMDLEIIRQEGKQYM 58 (95)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CcCHHHHHHHHHHHHHCCCeEEECCeeE
Confidence 3457889999999999999999655544
No 83
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=65.53 E-value=11 Score=31.16 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=39.8
Q ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccc-eeecCCceEEec
Q 024196 106 KVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDI-ISKDKKEIQWKG 178 (271)
Q Consensus 106 KVcekVk~k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~l-I~K~Kk~i~W~G 178 (271)
++.+.+++. +..|..|+|++| ..-+|-||.-++.|+..|+ |.+....|.+..
T Consensus 25 ~Il~~L~~~~~~~s~~eLa~~l---------------------~vS~~Ti~rdi~~L~~~G~~I~~~~~Gy~l~~ 78 (187)
T 1j5y_A 25 SIVRILERSKEPVSGAQLAEEL---------------------SVSRQVIVQDIAYLRSLGYNIVATPRGYVLAG 78 (187)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHH---------------------TSCHHHHHHHHHHHHHHTCCCEEETTEEECCT
T ss_pred HHHHHHHHcCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEEEECCEEEECC
Confidence 466777764 559999999998 3567888888899999999 877555666554
No 84
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=65.07 E-value=9.5 Score=28.27 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.++.+.|++.|..+.+|+|++| ...+.+||| -|+.|+..|+|.|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l-----------------~VS~~TIRr----dL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTL-----------------NTPQPMINA----MLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHT-----------------TCCHHHHHH----HHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHH-----------------CcCHHHHHH----HHHHHHHCCCEEEe
Confidence 4578899999999999999998 112345655 57999999999985
No 85
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=64.66 E-value=11 Score=30.99 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=40.6
Q ss_pred ccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|-..-.++...++..+..++.|+|+.| ..-...|..-++-|+..|+|.+
T Consensus 24 ~ld~~d~~IL~~L~~~~~~s~~eLA~~l---------------------glS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKIT---------------------GLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEe
Confidence 3666677899999999999999999998 1334556666899999999987
No 86
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.46 E-value=14 Score=26.81 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=38.0
Q ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhh-hhhHHHHhhhccceee--cCCceEEe
Q 024196 106 KVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR-VYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 106 KVcekVk~kg-~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRR-VYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
.|...+...+ ..|..|+|+.+ ..-+-. |+.+++.|+.-|+|++ ...+..+.
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l---------------------~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~ 73 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKAS---------------------GVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTL 73 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHH---------------------CCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHH---------------------CCCchHHHHHHHHHHHHCCCeecCCCCCCeEEE
Confidence 3455666666 89999999998 244667 8999999999999986 23344444
No 87
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=64.25 E-value=11 Score=28.79 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEe
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
+|...+. .+..+..|+|+.| ..-+-.|+-.|+.|+..|+|++ .++.+.|.
T Consensus 25 ~IL~~L~-~~~~~~~eLa~~l---------------------gis~stvs~~L~~L~~~GlV~~~~~gr~~~y~ 76 (118)
T 2jsc_A 25 RILVALL-DGVCYPGQLAAHL---------------------GLTRSNVSNHLSCLRGCGLVVATYEGRQVRYA 76 (118)
T ss_dssp HHHHHHH-TTCCSTTTHHHHH---------------------SSCHHHHHHHHHHHTTTTSEEEEECSSSEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCceEEEEECCEEEEE
Confidence 4555555 4567788888887 2456789999999999999987 55555554
No 88
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=64.12 E-value=12 Score=29.52 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=40.6
Q ss_pred cccchhH--HHHHHHHHh-c-CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFS--MKVCEKVES-K-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS--~KVcekVk~-k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|||.-. ..|.+.+.+ . +..|-.||.+.|-.+.. ..-+--||..|+.|+..|+|.|
T Consensus 12 ~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~----------------~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 12 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGE----------------DVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTC----------------CCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCC----------------CCCHHHHHHHHHHHHHCCcEEE
Confidence 5666555 347788876 3 57888888888754421 1335689999999999999999
No 89
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=63.65 E-value=10 Score=33.39 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=44.3
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.....|.+.+.+.+.+|..|+|+.| ..-+-.|+.+++.|+..|+|++.
T Consensus 148 ~~L~~~~~~IL~~L~~~~~~s~~eLA~~l---------------------glsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 148 RDYSREEMKLLNVLYETKGTGITELAKML---------------------DKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp SCCCHHHHHHHHHHHHHTCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 36777778888888888889999999998 24577899999999999999995
No 90
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=63.17 E-value=5.5 Score=30.59 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=44.1
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceE
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQ 175 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~ 175 (271)
.||-.--..|.+.+-+.+..|-.|||+.|-. +...-+-.||-+|+-|+.-|+|+| +++.+.
T Consensus 31 ~~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~-----------------~~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~ 93 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWSLGEARVDEIYAQIPQ-----------------ELEWSLATVKTLLGRLVKKEMLSTEKEGRKFV 93 (99)
T ss_dssp CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCG-----------------GGCCCHHHHHHHHHHHHHTTSCEEEEETTEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHhc-----------------ccCCCHhhHHHHHHHHHHCCCEEEEeCCCEEE
Confidence 4454444667788888888999999988711 111235679999999999999999 455444
Q ss_pred E
Q 024196 176 W 176 (271)
Q Consensus 176 W 176 (271)
+
T Consensus 94 Y 94 (99)
T 2k4b_A 94 Y 94 (99)
T ss_dssp E
T ss_pred E
Confidence 3
No 91
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=62.66 E-value=51 Score=25.46 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=41.3
Q ss_pred ccchhHHHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 99 GLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 99 GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
||-.--..|+..+-. .+..|-.|||+.|-.+ ...-+-.||-+++-|+.-|+|.|
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~-----------------~~~~~~Tvt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSAR-----------------RDLAYTTVMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTT-----------------CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-----------------CCCCHHHHHHHHHHHHHCCCEEE
Confidence 455555678888887 5889999999998211 01235689999999999999999
No 92
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=62.58 E-value=10 Score=30.14 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=40.1
Q ss_pred cccccchhHH--HHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 96 SGRGLRQFSM--KVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 96 ~~~GLR~fS~--KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
...|||.-.. .|.+.+.+ .+..|-.||.+.|-.+.. ..-+--||..|+.|+..|+|.|
T Consensus 6 r~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~----------------~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 6 PPVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGD----------------AVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp ----CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTC----------------CCCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC----------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 3467777663 47787766 567888888888744321 1336689999999999999999
No 93
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.49 E-value=16 Score=25.52 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQF 215 (271)
Q Consensus 184 ~~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~ 215 (271)
..+++.|+.|...|+.++...+++++||..+.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999888888888877643
No 94
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=62.20 E-value=11 Score=30.31 Aligned_cols=46 Identities=7% Similarity=0.161 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 103 FSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 103 fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
+-.++.+.++..++.+|.|+|+.| ..-.-.|..-++-|+.-|+|.+
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l---------------------g~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV---------------------GLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeee
Confidence 346788999999999999999998 1234455556789999999986
No 95
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=62.12 E-value=40 Score=28.76 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=38.8
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec-CCceE
Q 024196 105 MKVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD-KKEIQ 175 (271)
Q Consensus 105 ~KVcekVk~kg-~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~-Kk~i~ 175 (271)
..|.+.+...+ ..|..|+|+.+ ..-|--||-+++.|+..|+|++. .+.|.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~---------------------gl~~stv~r~l~~L~~~G~v~~~~~~~Y~ 62 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKF---------------------NMSVSNAYKYMVVLEEKGFVLRKKDKRYV 62 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEECTTSCEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCcEEECCCCcEE
Confidence 45667776654 68999999997 24577899999999999999996 44443
No 96
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=61.56 E-value=17 Score=29.20 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=40.0
Q ss_pred cccchhH--HHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFS--MKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|||.-. ..|.+.+.+ .+..|-.||.+.|-.+.. ..-+--||..|+.|+..|+|.|
T Consensus 21 ~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~----------------~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 21 NGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDK----------------NTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp CC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHST----------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC----------------CCCHhhHHHHHHHHHHCCcEEE
Confidence 5666655 347777765 467888888888855421 1235689999999999999999
No 97
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=61.53 E-value=51 Score=25.02 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=37.7
Q ss_pred cccchhHHHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+.. .+.+|..|+|+.+ ..-+-.|.-+++-|+.-|+|+|
T Consensus 35 ~glt~~q~~vL~~l~~~~~~~t~~eLa~~l---------------------~i~~~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 35 TGLRVRSYSVLVLACEQAEGVNQRGVAATM---------------------GLDPSQIVGLVDELEERGLVVR 86 (150)
T ss_dssp GTCCHHHHHHHHHHHHSTTCCCSHHHHHHH---------------------TCCHHHHHHHHHHHHTTTSEEC
T ss_pred cCCCHHHHHHHHHHHhCCCCcCHHHHHHHH---------------------CCCHhHHHHHHHHHHHCCCEEe
Confidence 4555555666666654 3466888888887 2446778899999999999998
No 98
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=61.35 E-value=13 Score=28.35 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEe
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
.+|+..+. .+..+..|+|+.| ..-+-.|+-.|++|+..|||.+ .++.+.|.
T Consensus 21 ~~Il~~L~-~~~~~~~eLa~~l---------------------~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~ 73 (118)
T 3f6o_A 21 RAVLGRLS-RGPATVSELAKPF---------------------DMALPSFMKHIHFLEDSGWIRTHKQGRVRTCA 73 (118)
T ss_dssp HHHHHHHH-TCCEEHHHHHTTC---------------------CSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHh---------------------CcCHHHHHHHHHHHHHCCCeEEEecCCEEEEE
Confidence 44556665 5777888888776 2446778899999999999987 44444443
No 99
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=60.17 E-value=11 Score=28.85 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.+|.+.|++.|..+..|+|++| ...+.+||| -|+.|+..|+|.|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l-----------------~VS~~TIRr----DL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARL-----------------QTPQPLIDA----MLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHT-----------------TCCHHHHHH----HHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHH-----------------CcCHHHHHH----HHHHHHHCCCEEEE
Confidence 4578899999999999999998 112245555 57999999999983
No 100
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=59.94 E-value=28 Score=26.20 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=39.4
Q ss_pred ccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
||-.--..|...+...+. |.+|+|+.+ ..-+-.|.-+++-|+.-|+|+|
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l---------------------~~~~~tvs~~l~~Le~~Glv~r 82 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRY---------------------FVTQSAITAAVDKLEAKGLVRR 82 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHH---------------------CCChhHHHHHHHHHHHCCCEEe
Confidence 565556677788877777 899999887 2446678899999999999998
No 101
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.33 E-value=30 Score=25.95 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (271)
Q Consensus 186 ~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~ 223 (271)
.+.+|+..+.+..+.|++|...+.+|..+......+|.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665566666666666666555554444444
No 102
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=58.84 E-value=20 Score=27.44 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecC
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~K 171 (271)
..+...+...+..+..|+|+.| ..-+-.|..+++.|+.-|+|.+..
T Consensus 11 ~~i~~l~~~~~~~~~~ela~~l---------------------~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 11 EQIYMLIEEKGYARVSDIAEAL---------------------AVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhhcCCCCHHHHHHHh---------------------CCCHHHHHHHHHHHHHCCCEEEee
Confidence 3455566677889999999998 244677888999999999999954
No 103
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=58.63 E-value=18 Score=27.46 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=32.4
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecC
Q 024196 112 ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (271)
Q Consensus 112 k~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~K 171 (271)
+..+..+..|+|+.| ..-+-.|+.+++.|+.-|+|++..
T Consensus 27 ~~~~~~s~~ela~~l---------------------~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 27 DSGEGAKINRIAKDL---------------------KIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTTSCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred hcCCCcCHHHHHHHh---------------------CCChHHHHHHHHHHHHCCCEEecC
Confidence 346788999999998 244667899999999999999965
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.53 E-value=33 Score=24.39 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (271)
Q Consensus 186 ~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~ 223 (271)
.++.|..+...|...-...+..+..|......|++||.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777778888888888888874
No 105
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=57.83 E-value=9.8 Score=28.45 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|...+. .+..+++|+|+.|- ..-+..|+..|+.|+..|+|+|
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~--------------------gis~~~ls~~L~~Le~~GlV~r 71 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIP--------------------GISEKMLIDELKFLCGKGLIKK 71 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHST--------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-hCCcCHHHHHHHcc--------------------cCCHHHHHHHHHHHHHCCCEEE
Confidence 3444554 67889999998760 1346789999999999999998
No 106
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=57.62 E-value=14 Score=29.78 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=40.5
Q ss_pred cccchhH--HHHHHHHHh-c-CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFS--MKVCEKVES-K-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS--~KVcekVk~-k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|||.-. ..|.+.+.+ . +..|-.||.+.|-.++. ..-+--||..|+.|+..|||.|
T Consensus 11 ~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~----------------~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 11 AGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGE----------------EIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp TTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTC----------------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC----------------CCCHHHHHHHHHHHHHCCcEEE
Confidence 4666555 347777765 3 57888888888754421 1335679999999999999999
No 107
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=56.70 E-value=15 Score=27.20 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=32.6
Q ss_pred HHHHHHHhc------CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 106 KVCEKVESK------GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 106 KVcekVk~k------g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|++.|++. +..|..|+|+.| ..-.--|..-|+.|+.-|+|.+
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~l---------------------gvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAA---------------------GLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCcEEe
Confidence 455666655 899999999998 0112346678999999999999
No 108
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=56.30 E-value=22 Score=27.12 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=42.1
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|...+...+..|..|+|+.| ..-+-.|.-+++-|+.-|+|++.
T Consensus 43 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l---------------------~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 43 LDLTYPQYLVMLVLWETDERSVSEIGERL---------------------YLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp TTCCHHHHHHHHHHHHSCSEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHh---------------------CCCcccHHHHHHHHHHCCCEeec
Confidence 46665556778888888889999999988 23466788999999999999983
No 109
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=54.64 E-value=93 Score=26.43 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=36.4
Q ss_pred HHHHHHHHhc-CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecC
Q 024196 105 MKVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (271)
Q Consensus 105 ~KVcekVk~k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~K 171 (271)
..|.+.+... +..+..|+|+.+ ..-|-.||-+|+.|+..|+|+++.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~---------------------gl~~stv~r~l~~L~~~G~v~~~~ 55 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLV---------------------GLPRSTVQRIINALEEEFLVEALG 55 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHT---------------------TSCHHHHHHHHHHHHTTTSEEECG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEeC
Confidence 4456666554 468999999987 245778999999999999999953
No 110
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=54.51 E-value=63 Score=23.92 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=45.8
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceE
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQ 175 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~ 175 (271)
.||-.--..|...+-..+..|-.|||+.|-.. ...-+-.|+-+++-|+.-|+|+| ++....
T Consensus 6 ~~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~-----------------~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~ 68 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWDKKSVSANEIVVEIQKY-----------------KEVSDKTIRTLITRLYKKEIIKRYKSENIYF 68 (126)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTT-----------------SCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHhhc-----------------CCCChhhHHHHHHHHHHCCceEEEeCCCeEE
Confidence 45665567788888888999999999998211 01235679999999999999999 444433
Q ss_pred E
Q 024196 176 W 176 (271)
Q Consensus 176 W 176 (271)
+
T Consensus 69 ~ 69 (126)
T 1sd4_A 69 Y 69 (126)
T ss_dssp E
T ss_pred E
Confidence 3
No 111
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=54.43 E-value=26 Score=27.07 Aligned_cols=50 Identities=10% Similarity=0.231 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEe
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
+|...+. .+..+..|+|+.| ..-+-.|+-.++.|+..|+|.+ .++.+.|.
T Consensus 50 ~IL~~L~-~~~~s~~ela~~l---------------------gis~stvs~~L~~Le~~Glv~~~~~gr~~~y~ 101 (122)
T 1r1t_A 50 RLLSLLA-RSELCVGDLAQAI---------------------GVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQ 101 (122)
T ss_dssp HHHHHHT-TCCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 4555554 4678899999988 2446789999999999999987 44444443
No 112
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=53.56 E-value=40 Score=26.37 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=31.1
Q ss_pred eeecCCceEEecCCCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 167 ISKDKKEIQWKGLPRT----SLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLI 222 (271)
Q Consensus 167 I~K~Kk~i~W~G~~~~----s~~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI 222 (271)
|...++-+-|.|.+-. ...-++.|+..+..+.++++...+.+.++..+...+..-+
T Consensus 66 i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 66 LKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp CCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567889997522 2233444555555556666666666666665555444433
No 113
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=52.93 E-value=14 Score=31.93 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
.|.+.+.. +..|+.|+|+.+ ..-.++++.+|.+|.++|+++++...|.
T Consensus 30 ~i~~~l~~-~~~t~~ela~~~---------------------~~~~~~l~r~L~~L~~~g~l~~~~~~y~ 77 (335)
T 2r3s_A 30 NVFTAISQ-GIESSQSLAQKC---------------------QTSERGMRMLCDYLVIIGFMTKQAEGYR 77 (335)
T ss_dssp THHHHHTT-SEECHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred ChHHHHhc-CCCCHHHHHHHh---------------------CCCchHHHHHHHHHHhcCCeEecCCEEe
Confidence 45666654 789999999987 1226889999999999999998655554
No 114
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=52.82 E-value=19 Score=32.33 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=37.7
Q ss_pred HHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 106 KVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 106 KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
.|.+.+.. .+..|+.|+|..+ ..-.+.++.+|.+|.++|+++++...|.
T Consensus 39 gifd~L~~~~~~~t~~eLA~~~---------------------g~~~~~l~rlLr~l~~~g~l~~~~~~y~ 88 (363)
T 3dp7_A 39 GIFQLLSGKREGYTLQEISGRT---------------------GLTRYAAQVLLEASLTIGTILLEEDRYV 88 (363)
T ss_dssp THHHHHHTCTTCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred CHHHHHHhcCCCCCHHHHHHHh---------------------CcCHHHHHHHHHHHhhCCCeEecCCEEe
Confidence 36677776 5789999999987 1234668999999999999998654443
No 115
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=52.36 E-value=26 Score=28.68 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=39.7
Q ss_pred cccchhH--HHHHHHHHh-cCCCcHHHHHHHHHHH--hcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFS--MKVCEKVES-KGRTTYNEVADELVAE--FADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS--~KVcekVk~-kg~TTYnEVAdeLV~e--~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|||.-. ..|.+.+.+ .+..|-.||.+.|-.+ .. ..-+--||-.|+.|+..|+|.|
T Consensus 27 ~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~----------------~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 27 GGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDL----------------NVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGG----------------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC----------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 4666554 336777766 4677777887777443 21 1235689999999999999999
No 116
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=52.18 E-value=18 Score=27.08 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.|...+. .+..+++|+|+.|- ..-+..|+..|+.|+..|+|+|
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~l~--------------------~is~~tls~~L~~Le~~GlI~r 60 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRLMP--------------------NITQKMLTQQLRELEADGVINR 60 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHHCT--------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHhc--------------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 3445554 68889999988750 2446789999999999999998
No 117
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=51.60 E-value=25 Score=27.94 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
..|...+. .+.++++|+|+.| ..-+..|...|+.|+..|||+|
T Consensus 27 l~IL~~L~-~g~~~~~eLa~~l---------------------gis~~tls~~L~~Le~~GlI~r 69 (146)
T 2f2e_A 27 MLIVRDAF-EGLTRFGEFQKSL---------------------GLAKNILAARLRNLVEHGVMVA 69 (146)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHH---------------------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHh---------------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 34444454 6889999999998 2446778999999999999999
No 118
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=51.05 E-value=30 Score=29.94 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=35.3
Q ss_pred HHHHHH-hcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCC
Q 024196 107 VCEKVE-SKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172 (271)
Q Consensus 107 VcekVk-~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk 172 (271)
|.+.+. ..+..+..|+|+.+ ..-|--+|-+|+.|+..|+|+++..
T Consensus 28 iL~~l~~~~~~~~~~eia~~~---------------------gl~kstv~r~l~tL~~~G~v~~~~~ 73 (260)
T 2o0y_A 28 LLELFDAAHPTRSLKELVEGT---------------------KLPKTTVVRLVATMCARSVLTSRAD 73 (260)
T ss_dssp HHTTCBTTBSSBCHHHHHHHH---------------------CCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHhhCCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEECCC
Confidence 444443 25678999999998 2457889999999999999999544
No 119
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=49.83 E-value=39 Score=29.28 Aligned_cols=44 Identities=7% Similarity=0.082 Sum_probs=34.8
Q ss_pred HHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecC
Q 024196 107 VCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (271)
Q Consensus 107 VcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~K 171 (271)
|.+.+.. .+..|..|+|+.+ .--|=.+|.+|+.|+..|+|+++.
T Consensus 11 IL~~l~~~~~~lsl~eia~~l---------------------gl~ksT~~RlL~tL~~~G~v~~~~ 55 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLS---------------------GMNKATVYRLMSELQEAGFVEQVE 55 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHH---------------------CSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHhhCCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEcC
Confidence 4444443 5678999999998 245778999999999999999954
No 120
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=49.63 E-value=51 Score=21.70 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
+...+.+.+..|-.|+++.|-... ...-.+-||-.|+ .+|+| |
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~----------------~~vs~~Tv~R~L~---~lg~v-~ 52 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDG----------------YKVTQATVSRDIK---ELHLV-K 52 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTT----------------CCCCHHHHHHHHH---HHTCE-E
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC----------------CCcCHHHHHHHHH---HcCCE-E
Confidence 456677888999999999984331 1244677887777 55677 5
No 121
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=49.34 E-value=30 Score=21.21 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024196 187 IEELKAERLGLRNRIEKKTAYL 208 (271)
Q Consensus 187 ~~~Lk~E~~~l~e~I~~Kk~~L 208 (271)
.++|-.|+++|.+++++.++.|
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788888888877666655
No 122
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=48.45 E-value=26 Score=30.80 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=39.0
Q ss_pred cccchhH--HHHHHHHHhc-CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCC
Q 024196 98 RGLRQFS--MKVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172 (271)
Q Consensus 98 ~GLR~fS--~KVcekVk~k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk 172 (271)
.+.+-+. ..|.+.+... +..|..|||+.+ .--|=.+|.+|+.|+..|+|+++..
T Consensus 24 ~~v~sl~Ral~IL~~l~~~~~~ltl~eia~~l---------------------gl~ksTv~RlL~tL~~~G~v~~~~~ 80 (275)
T 3mq0_A 24 DTVPALRRAVRILDLVAGSPRDLTAAELTRFL---------------------DLPKSSAHGLLAVMTELDLLARSAD 80 (275)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCEEHHHHHHHH---------------------TCC--CHHHHHHHHHHTTSEEECTT
T ss_pred CcchHHHHHHHHHHHHhhCCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEECCC
Confidence 4444444 4566777654 468999999998 2346679999999999999999543
No 123
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=47.86 E-value=17 Score=31.33 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 106 KVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 106 KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
.|.+.+.. .+..+..|+|+.+ ..-|--||.+|+.|+..|+|+++.+.|.
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~---------------------gl~~stv~r~l~~L~~~G~v~~~~~~Y~ 67 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEA---------------------GLSRPAVRRILLTLQKLGYVAGSGGRWS 67 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEeCCCEEE
Confidence 44555543 4578999999998 2457889999999999999999655544
No 124
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=47.85 E-value=41 Score=26.07 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 103 FSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 103 fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
+-..++..+...+..+..++|+.| ..-+-.|..+++.|+.-|+|++.
T Consensus 41 ~~~~i~~~l~~~~~~~~~~la~~l---------------------~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 41 YVELISDLIREVGEARQVDMAARL---------------------GVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHh---------------------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 334445566667788899999988 24456677899999999999994
No 125
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=47.51 E-value=1.1e+02 Score=24.61 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHh--cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 99 GLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 99 GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
||-.--..|...+.. .+.+|-.++|+.+ ..-+-.|.-+++-|+.-|+|++
T Consensus 38 ~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l---------------------~is~~tvs~~l~~Le~~GlV~r 89 (189)
T 3nqo_A 38 ILTSRQYMTILSILHLPEEETTLNNIARKM---------------------GTSKQNINRLVANLEKNGYVDV 89 (189)
T ss_dssp SSCHHHHHHHHHHHHSCGGGCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHhccCCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEe
Confidence 355555667777765 6788999999888 2346678889999999999998
No 126
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=47.13 E-value=11 Score=29.80 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHh---cCCCcHHHHHHHH
Q 024196 102 QFSMKVCEKVES---KGRTTYNEVADEL 126 (271)
Q Consensus 102 ~fS~KVcekVk~---kg~TTYnEVAdeL 126 (271)
-|..+|.+.|.+ ..++||.+||..|
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~ 30 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMA 30 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHh
Confidence 477889999988 7789999999987
No 127
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=46.63 E-value=46 Score=26.82 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=34.7
Q ss_pred ceeecCCceEEecCCCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 166 IISKDKKEIQWKGLPRT----SLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (271)
Q Consensus 166 lI~K~Kk~i~W~G~~~~----s~~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~ 223 (271)
-|...++-+-|.|.+-- ...-++.|+..+..+...++...+.+.++..+...+..-++
T Consensus 75 ~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 75 VIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp ECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344667789987532 22334455555666666677777777777766665555443
No 128
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=46.56 E-value=32 Score=29.93 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec-CCceE
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD-KKEIQ 175 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~-Kk~i~ 175 (271)
.|.+.+. .+..|+.|+|+.+ ..-.+.++.+|.+|.++||+++. ...|.
T Consensus 32 gi~~~l~-~~~~t~~ela~~~---------------------~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~ 80 (334)
T 2ip2_A 32 GLADLIE-SGIDSDETLAAAV---------------------GSDAERIHRLMRLLVAFEIFQGDTRDGYA 80 (334)
T ss_dssp THHHHHH-TTCCSHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CcHHHHh-CCCCCHHHHHHHh---------------------CcCHHHHHHHHHHHHhCCceEecCCCeEe
Confidence 3556664 4789999999987 12347899999999999999984 44544
No 129
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=46.22 E-value=12 Score=30.18 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHh---cCCCcHHHHHHHH
Q 024196 102 QFSMKVCEKVES---KGRTTYNEVADEL 126 (271)
Q Consensus 102 ~fS~KVcekVk~---kg~TTYnEVAdeL 126 (271)
.|..+|.+.|.+ ..++||.+||..|
T Consensus 5 ~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~ 32 (116)
T 3gva_A 5 EFYTKVYDAVCEIPYGKVSTYGEIARYV 32 (116)
T ss_dssp HHHHHHHHHHTTSCTTCBBCHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCeEeHHHHHHHh
Confidence 478899999988 7899999999987
No 130
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=45.49 E-value=35 Score=29.80 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCCceEE
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQW 176 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~W 176 (271)
..|.+.+.. +..|+.|+|..+ ..-.+.++.++.+|.++||+.+ .+..|.-
T Consensus 28 lglf~~l~~-g~~t~~elA~~~---------------------~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~ 78 (332)
T 3i53_A 28 LRVADHIAA-GHRTAAEIASAA---------------------GAHADSLDRLLRHLVAVGLFTRDGQGVYGL 78 (332)
T ss_dssp HTHHHHHHT-TCCBHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEECTTSBEEE
T ss_pred cChHHHHhc-CCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHhCCcEEecCCCeEEc
Confidence 346777754 789999999987 1224578999999999999999 4565553
No 131
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.33 E-value=38 Score=24.99 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLI 222 (271)
Q Consensus 187 ~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI 222 (271)
.+++.+.+...+++|.+.+..|.+-......|++.+
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555444444444444444444
No 132
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=45.32 E-value=17 Score=27.47 Aligned_cols=51 Identities=8% Similarity=-0.007 Sum_probs=40.7
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|...+...+.++..|+|+.+ ..-+-.|+-+++-|+.-|+|++
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~~~~~la~~l---------------------~~~~~tvs~~l~~L~~~glv~r 86 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHETLTVKKMGEQL---------------------YLDSGTLTPMLKRMEQQGLITR 86 (147)
T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTT---------------------TCCHHHHHHHHHHHHHHTSEEC
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHH---------------------CCCcCcHHHHHHHHHHCCCEEe
Confidence 45655556777788777888999988876 2346779999999999999998
No 133
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=45.26 E-value=27 Score=30.93 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
..|.+.+.. +..|+.|+|..+ ..-.++++.+|.+|.++||+++....|.
T Consensus 54 lgif~~L~~-~~~t~~eLA~~~---------------------g~~~~~l~rlLr~L~~~gll~~~~~~y~ 102 (359)
T 1x19_A 54 LDLFSHMAE-GPKDLATLAADT---------------------GSVPPRLEMLLETLRQMRVINLEDGKWS 102 (359)
T ss_dssp HTHHHHHTT-CCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred cCcHHHHcC-CCCCHHHHHHHh---------------------CcChHHHHHHHHHHHhCCCeEeeCCeEe
Confidence 446677754 789999999987 1226789999999999999999555544
No 134
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=45.24 E-value=1.1e+02 Score=23.90 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=46.4
Q ss_pred cccchhHHHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee----cCC
Q 024196 98 RGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK----DKK 172 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K----~Kk 172 (271)
-||-.--..|.-.+.. .+.++-+|+|+.+ ..-+-.|--+++-|+.-|+|+| ..+
T Consensus 27 ~gLt~~q~~vL~~L~~~~~~~~~~eLa~~l---------------------~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 27 LELTQTHWVTLYNINRLPPEQSQIQLAKAI---------------------GIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp GCCCHHHHHHHHHHHHSCTTSCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCHHHHHHHHHHHHcCCCCcHHHHHHHH---------------------CcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 4555444555555543 4556667888877 2446678889999999999998 245
Q ss_pred ceEEecCCCCChhHHHHHH
Q 024196 173 EIQWKGLPRTSLNDIEELK 191 (271)
Q Consensus 173 ~i~W~G~~~~s~~~~~~Lk 191 (271)
+..+.-+......-++.+.
T Consensus 86 R~~~l~LT~~G~~~~~~~~ 104 (151)
T 4aik_A 86 RAKRIKLTEQSSPIIEQVD 104 (151)
T ss_dssp TCEEEEECGGGHHHHHHHH
T ss_pred cchhhhcCHHHHHHHHHHH
Confidence 6666666444333333333
No 135
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.67 E-value=85 Score=23.48 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=27.8
Q ss_pred hhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 184 LNDIEEL----KAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQR 224 (271)
Q Consensus 184 ~~~~~~L----k~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~R 224 (271)
..+++.+ -+|+...+++|+.+...|++.+.....|++-+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454443 3445566778888888888888888777776643
No 136
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=43.55 E-value=44 Score=26.93 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEE
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W 176 (271)
.+|...+. .+..+..|+|+.| ..-+-.|+--|.+|+..|||++ .++.+.|
T Consensus 61 ~~IL~~L~-~~~~t~~eLa~~l---------------------gls~stvs~hL~~L~~aGlV~~~~~Gr~~~y 112 (151)
T 3f6v_A 61 RRLVQLLT-SGEQTVNNLAAHF---------------------PASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp HHHHHHGG-GCCEEHHHHHTTS---------------------SSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 45566665 6778888888876 2346678999999999999987 4444444
No 137
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=43.40 E-value=30 Score=27.79 Aligned_cols=44 Identities=11% Similarity=0.306 Sum_probs=31.7
Q ss_pred CceEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQF 215 (271)
Q Consensus 172 k~i~W~G~~~~s~~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~ 215 (271)
..+.|.|+++..+.++++|++|+...+.+|---++.|++-+.++
T Consensus 22 ~~~~~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 22 ENLYFQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667888888899999999998877666655555555554443
No 138
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=43.39 E-value=19 Score=31.33 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=37.5
Q ss_pred HHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 106 KVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 106 KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
.|.+.+.. .+..+..|+|+.+ ..-|--||-+|+.|+..|+|+++.+.|.
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~---------------------gl~~stv~r~l~tL~~~G~v~~~~~~Y~ 74 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARAT---------------------DLTRATARRFLLTLVELGYVATDGSAFW 74 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHHTSEEESSSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 34444432 4678999999998 3457889999999999999999755554
No 139
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=42.66 E-value=32 Score=25.81 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
..|...+.. +.+++.|+|+.| + ..-+-.|+..++.|+..|+|++
T Consensus 25 ~~IL~~L~~-~~~~~~eLa~~l------~--------------~is~~tvs~~L~~Le~~GlI~r 68 (112)
T 1z7u_A 25 LSLMDELFQ-GTKRNGELMRAL------D--------------GITQRVLTDRLREMEKDGLVHR 68 (112)
T ss_dssp HHHHHHHHH-SCBCHHHHHHHS------T--------------TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHh-CCCCHHHHHHHh------c--------------cCCHHHHHHHHHHHHHCCCEEE
Confidence 345455554 778999998886 0 2446789999999999999998
No 140
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=42.47 E-value=1.5e+02 Score=24.93 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.+|+..+ ..+.++..|+|+.| ..-.--||-.|+.|+..|||.+
T Consensus 18 l~IL~~L-~~~~~s~~eLa~~l---------------------~is~stvs~hLk~Le~~GLV~~ 60 (202)
T 2p4w_A 18 RRILFLL-TKRPYFVSELSREL---------------------GVGQKAVLEHLRILEEAGLIES 60 (202)
T ss_dssp HHHHHHH-HHSCEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-HhCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCceEE
Confidence 3455666 35788999999998 1335679999999999999998
No 141
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=41.77 E-value=34 Score=30.15 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCC
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKK 172 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk 172 (271)
..|.+.+ ..+..|+.|+|..+ ..-.+.++.+|.+|.++||+++ ...
T Consensus 39 l~i~~~l-~~~~~t~~eLA~~~---------------------g~~~~~l~r~Lr~L~~~Gll~~~~~~ 85 (374)
T 1qzz_A 39 LRLVDHL-LAGADTLAGLADRT---------------------DTHPQALSRLVRHLTVVGVLEGGEKQ 85 (374)
T ss_dssp TTHHHHH-HTTCCSHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEECCCC-
T ss_pred cChHHHH-hCCCCCHHHHHHHh---------------------CcCHHHHHHHHHHHhhCCCEEEeCCC
Confidence 3467777 45789999999987 1224789999999999999998 444
No 142
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.60 E-value=1.5e+02 Score=28.53 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024196 187 IEELKAERLGLRNRIEKK 204 (271)
Q Consensus 187 ~~~Lk~E~~~l~e~I~~K 204 (271)
++.+..+..+|+..|+-|
T Consensus 143 l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 143 VRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444455555555443
No 143
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.27 E-value=94 Score=21.54 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLI 222 (271)
Q Consensus 187 ~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI 222 (271)
++.|+.+...|...-......+..|..+...|++++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554555555555555555555543
No 144
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.69 E-value=1e+02 Score=21.68 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLI 222 (271)
Q Consensus 187 ~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI 222 (271)
++.|+.+...|...-...+..+..|..+...|+.++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555555555555666666666666555
No 145
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=38.08 E-value=30 Score=25.52 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 106 KVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 106 KVcekVk~kg-~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
+|+..+...| ..|-.|+|+.| ..-+--|..+++.|+..|+|++.
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~l---------------------gvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQL---------------------NIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTT---------------------TSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 4445553333 67788887776 34567799999999999999875
No 146
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=37.94 E-value=30 Score=27.10 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=39.9
Q ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCc
Q 024196 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKE 173 (271)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~ 173 (271)
+-..-.+|.+.++..|..|..++|+.+ + ...-+-.|-.-+.+|+..|||++.+..
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l-------~------------~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRD-------E------------IRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTST-------T------------CCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHH-------h------------cCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 455568899999998999999999865 0 012234455567899999999995443
No 147
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=37.81 E-value=1.3e+02 Score=23.11 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=39.3
Q ss_pred cccchhHHHHHHHHH--hcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--c--C
Q 024196 98 RGLRQFSMKVCEKVE--SKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--D--K 171 (271)
Q Consensus 98 ~GLR~fS~KVcekVk--~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~--K 171 (271)
.||-.--..|.-.+. ..+.+|-+|+|+.| ..-+-.|--+++-|+.-|+|+| + .
T Consensus 31 ~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l---------------------~~~~~tvs~~v~~Le~~Glv~r~~~~~D 89 (147)
T 4b8x_A 31 YGLTFARYEALVLLTFSKSGELPMSKIGERL---------------------MVHPTSVTNTVDRLVRSGLVAKRPNPND 89 (147)
T ss_dssp GTCCHHHHHHHHHHHTSGGGEEEHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEEECC--
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHhCCCEEEeecCCc
Confidence 345443344444443 35678888888887 2345677889999999999998 2 3
Q ss_pred CceEEecC
Q 024196 172 KEIQWKGL 179 (271)
Q Consensus 172 k~i~W~G~ 179 (271)
++..+.-+
T Consensus 90 rR~~~l~L 97 (147)
T 4b8x_A 90 GRGTLATI 97 (147)
T ss_dssp --CEEEEE
T ss_pred CceeEEEE
Confidence 56666654
No 148
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=37.47 E-value=28 Score=27.33 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
|...+. .+..+++|+|+.|- ..-+..++..|+.|+..|||+|
T Consensus 40 IL~~L~-~g~~~~~eLa~~l~--------------------gis~~tls~~L~~Le~~GlV~r 81 (131)
T 1yyv_A 40 ILVALR-DGTHRFSDLRRXMG--------------------GVSEXMLAQSLQALEQDGFLNR 81 (131)
T ss_dssp HHHHGG-GCCEEHHHHHHHST--------------------TCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHH-cCCCCHHHHHHHhc--------------------cCCHHHHHHHHHHHHHCCcEEE
Confidence 444444 68899999998870 1346788999999999999998
No 149
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=37.20 E-value=48 Score=29.08 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCCceE
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQ 175 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~ 175 (271)
.|.+.+ ..+..|+.|+|+.+ ..-.+.++.+|.+|.+.||+++ ....|.
T Consensus 43 ~i~~~l-~~~~~t~~ela~~~---------------------~~~~~~l~r~L~~L~~~g~~~~~~~g~y~ 91 (360)
T 1tw3_A 43 RLVDHI-LAGARTVKALAART---------------------DTRPEALLRLIRHLVAIGLLEEDAPGEFV 91 (360)
T ss_dssp THHHHH-HTTCCBHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEEETTEEE
T ss_pred CHHHHH-hCCCCCHHHHHHHh---------------------CcCHHHHHHHHHHHHHCCCEEecCCCeEE
Confidence 466777 45789999999987 1235789999999999999998 544444
No 150
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=36.79 E-value=32 Score=24.95 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCCceEEecC
Q 024196 117 TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGL 179 (271)
Q Consensus 117 TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~W~G~ 179 (271)
.|-.|+|+.+ ..-+-.|+.+++.|+.-|+|.. ...+.++.-+
T Consensus 31 ~t~~eLa~~l---------------------~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~L 73 (95)
T 2qvo_A 31 VYIQYIASKV---------------------NSPHSYVWLIIKKFEEAKMVECELEGRTKIIRL 73 (95)
T ss_dssp EEHHHHHHHS---------------------SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred cCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEE
Confidence 8889999887 2446789999999999999954 3445544433
No 151
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=36.48 E-value=19 Score=30.18 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=25.5
Q ss_pred cccchhHHHHHHHHHh---cCCCcHHHHHHHH
Q 024196 98 RGLRQFSMKVCEKVES---KGRTTYNEVADEL 126 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~---kg~TTYnEVAdeL 126 (271)
.|+-.|..+|++.|.. ..++||.+||..+
T Consensus 67 ~g~t~fq~~V~~~l~~IP~G~~~tYg~iA~~~ 98 (156)
T 1wrj_A 67 KPFNEFRIRVFKEVMRIKWGEVRTYKQVADAV 98 (156)
T ss_dssp TTSCHHHHHHHHHHTTSCTTCCEEHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCceEcHHHHHHHh
Confidence 5667899999999988 7789999999987
No 152
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=36.36 E-value=29 Score=26.13 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=38.6
Q ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee-cCCceEEe
Q 024196 105 MKVCEKVES---KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 177 (271)
Q Consensus 105 ~KVcekVk~---kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~W~ 177 (271)
..|+..+.. .+.||-+++|.+| +.-|+-|=-+|.-|+.-|.|.+ ..+...|.
T Consensus 15 ~~v~~~i~~L~~~~~~Ta~~IAkkL---------------------g~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 15 SLVKKEVLSLNTNDYTTAISLSNRL---------------------KINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 345555544 5569999999998 3445556667777999999999 88999996
No 153
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.47 E-value=39 Score=28.10 Aligned_cols=52 Identities=8% Similarity=-0.100 Sum_probs=41.6
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.||-.--..|...+...+.+|..|+|+.+ ..-+-.|.-+++-|+.-|+|+|.
T Consensus 44 ~gLt~~q~~iL~~L~~~~~~t~~eLa~~l---------------------~i~~stvs~~l~~Le~~GlV~r~ 95 (207)
T 2fxa_A 44 YDLNINEHHILWIAYQLNGASISEIAKFG---------------------VMHVSTAFNFSKKLEERGYLRFS 95 (207)
T ss_dssp GTCCHHHHHHHHHHHHHTSEEHHHHHHHT---------------------TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEEe
Confidence 56666667777778777889999999887 23466788899999999999993
No 154
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.20 E-value=1.3e+02 Score=22.73 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQF 215 (271)
Q Consensus 185 ~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~ 215 (271)
+.++.|+.|+..|+..|++..-.|..|..++
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666655533
No 155
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=34.16 E-value=79 Score=24.96 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=26.1
Q ss_pred cccchhhhhhHHHHhhhccceeecCCceEE
Q 024196 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (271)
Q Consensus 147 ~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W 176 (271)
....|..|+-+++-|+.-|+|+..++.|.-
T Consensus 179 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 208 (220)
T 3dv8_A 179 LGSHREVITRMLRYFQVEGLVKLSRGKITI 208 (220)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 356789999999999999999998888773
No 156
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=34.04 E-value=48 Score=27.28 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=30.6
Q ss_pred HHHHhcC-CCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 109 EKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 109 ekVk~kg-~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
+.+++.| ..|+.|+|+.| ..-+--|+..|+.|+.-|+|.+.
T Consensus 16 ~~~~~~g~~~s~~eia~~l---------------------gl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 16 EFIEKNGYPPSVREIARRF---------------------RITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHSSCCCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHhCCCCCHHHHHHHc---------------------CCCcHHHHHHHHHHHHCCCEEec
Confidence 3444444 78999999998 11133688899999999999994
No 157
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=33.56 E-value=55 Score=27.44 Aligned_cols=44 Identities=11% Similarity=0.260 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.+++..+. .+..|+.|+|+.| ..-+-.|+-.++.|+..|+|.+.
T Consensus 23 ~~IL~~L~-~~~~s~~eLA~~l---------------------glS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR-NKEMTISQLSEIL---------------------GKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 46777887 6899999999998 23355677778999999999884
No 158
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=32.77 E-value=51 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=27.5
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceEE
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W 176 (271)
+.-....+..|.-+++-|..-|+|+..++.|.-
T Consensus 182 A~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 214 (231)
T 3e97_A 182 MARTSSSRETVSRVLKRLEAHNILEVSPRSVTL 214 (231)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEE
T ss_pred HHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 344456799999999999999999998888763
No 159
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=32.28 E-value=59 Score=23.61 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhcccee
Q 024196 107 VCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIIS 168 (271)
Q Consensus 107 VcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~ 168 (271)
+.+-+++ +|...-..+|..+ ..-|.-|||+|+=|+.=|||.
T Consensus 15 lL~yIr~sGGildI~~~a~ky---------------------gV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVY---------------------GVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHH---------------------CCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCEEeHHHHHHHh---------------------CCCHHHHHHHHHHHHHCCCee
Confidence 4444443 5666666666655 467889999999999999985
No 160
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.24 E-value=1.2e+02 Score=23.39 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 024196 188 EELKAERLGLRNRIEKK---TAYLQELEDQFVGLQNLIQR 224 (271)
Q Consensus 188 ~~Lk~E~~~l~e~I~~K---k~~LqEL~~Q~~~lknLI~R 224 (271)
+.|.+++..+++.|... ...|++|..+...+-.+|+|
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443222 33444455555555555544
No 161
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=31.94 E-value=48 Score=26.18 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=27.7
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceEEe
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWK 177 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W~ 177 (271)
+.-....|..|.-+++-|+.-|+|+..++.|.-.
T Consensus 153 A~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 186 (202)
T 2zcw_A 153 AAAVGSVRETVTKVIGELAREGYIRSGYGKIQLL 186 (202)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEe
Confidence 3334567899999999999999999988887743
No 162
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=31.48 E-value=41 Score=26.83 Aligned_cols=35 Identities=17% Similarity=0.006 Sum_probs=29.0
Q ss_pred hhhhccccchhhhhhHHHHhhhccceeecCCceEE
Q 024196 142 QQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (271)
Q Consensus 142 ~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W 176 (271)
+-+.-....|..|.-+++-|+.-|+|+..++.|.-
T Consensus 183 ~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 217 (227)
T 3dkw_A 183 LVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISI 217 (227)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 34555567799999999999999999998887763
No 163
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=31.47 E-value=50 Score=26.08 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=26.8
Q ss_pred hccccchhhhhhHHHHhhhccceeecCCceEE
Q 024196 145 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (271)
Q Consensus 145 ~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W 176 (271)
.-....+..|.-+++-|+.-|+|+..++.|.-
T Consensus 171 ~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 202 (216)
T 4ev0_A 171 ALAGTSRETVSRVLHALAEEGVVRLGPGTVEV 202 (216)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 33456789999999999999999998887763
No 164
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=30.72 E-value=56 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.052 Sum_probs=28.0
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceEEe
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWK 177 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W~ 177 (271)
+.-....|..|.-+++-|+.-|+|++.++.|.-.
T Consensus 184 A~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 217 (250)
T 3e6c_C 184 GEITGVHHVTVSRVLASLKRENILDKKKNKIIVY 217 (250)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEES
T ss_pred HHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEe
Confidence 3334567999999999999999999988887754
No 165
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=30.68 E-value=53 Score=25.74 Aligned_cols=33 Identities=15% Similarity=-0.005 Sum_probs=27.1
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceEE
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W 176 (271)
+.-....+..|.-+++-|+.-|+|++.++.|.-
T Consensus 171 A~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 203 (207)
T 2oz6_A 171 GRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVV 203 (207)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 334456788999999999999999998887764
No 166
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=30.07 E-value=51 Score=28.80 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
|.+.+.. ..|+.|+|..+ ..-.+.++-+|.+|.++||+++....|.
T Consensus 49 if~~l~~--~~t~~elA~~~---------------------~~~~~~l~rlLr~L~~~gll~~~~~~y~ 94 (352)
T 3mcz_A 49 LFDLTQT--GRTPAEVAASF---------------------GMVEGKAAILLHALAALGLLTKEGDAFR 94 (352)
T ss_dssp HHHHTTS--CBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred hHHHhCC--CCCHHHHHHHh---------------------CcChHHHHHHHHHHHHCCCeEecCCeee
Confidence 5556643 88999999887 1234568999999999999999655543
No 167
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=30.07 E-value=1.9e+02 Score=22.26 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHhcCCCCCCC----CCChhhhccccchhhhhhHHHHhhhccceee-cCCce
Q 024196 118 TYNEVADELVAEFADPSNSLA----TPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEI 174 (271)
Q Consensus 118 TYnEVAdeLV~e~~~~~~~~~----~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i 174 (271)
=|.+|++.|...+....-..+ +..+-+.....-|--|-.|+..|++-|+|+. .++..
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~ 76 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGT 76 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEE
Confidence 366777776665542211111 1113445556778889999999999999998 44433
No 168
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=29.99 E-value=54 Score=26.15 Aligned_cols=33 Identities=15% Similarity=0.002 Sum_probs=27.3
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceEE
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W 176 (271)
+.-....|..|.-+++-|+.-|+|+..++.|.-
T Consensus 194 A~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 226 (230)
T 3iwz_A 194 ARLVGCSREMAGRVLKKLQADGLLHARGKTVVL 226 (230)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHhCCcHHHHHHHHHHHHHCCCEEECCCEEEE
Confidence 334456789999999999999999998888763
No 169
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=29.81 E-value=82 Score=28.24 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEec
Q 024196 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWKG 178 (271)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~G 178 (271)
.++.+.+...+..|..|+|++| ..-++.||.-++.|+..|++.. .++.|...+
T Consensus 8 ~~Il~~L~~~~~~s~~eLa~~l---------------------~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~ 62 (321)
T 1bia_A 8 LKLIALLANGEFHSGEQLGETL---------------------GMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPE 62 (321)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTCCCEEETTTEEECSS
T ss_pred HHHHHHHHcCCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHhCCCcEEEecCCCcEEee
Confidence 4577888888899999999998 3567888888999999998753 555666543
No 170
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=29.54 E-value=56 Score=25.62 Aligned_cols=32 Identities=25% Similarity=0.137 Sum_probs=26.8
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
+.-....|..|.-+++-|+.-|+|+..++.|.
T Consensus 174 A~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~ 205 (210)
T 3ryp_A 174 GQIVGCSRETVGRILKMLEDQNLISAHGKTIV 205 (210)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHhCCcHHHHHHHHHHHHHCCcEEeCCCEEE
Confidence 33345678999999999999999999888776
No 171
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.46 E-value=60 Score=25.88 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
|..-+. .|..+|+|+++.| ...-..-+...|..|+.-|||+|
T Consensus 31 IL~~L~-~g~~rf~eL~~~l--------------------~gIs~~~Ls~~L~~Le~~GLV~R 72 (131)
T 4a5n_A 31 LFYHMI-DGKKRFNEFRRIC--------------------PSITQRMLTLQLRELEADGIVHR 72 (131)
T ss_dssp HHHHHT-TSCBCHHHHHHHC--------------------TTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHh-cCCcCHHHHHHHh--------------------cccCHHHHHHHHHHHHHCCCEEE
Confidence 333443 7889999988886 02346678889999999999999
No 172
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=29.44 E-value=33 Score=29.29 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=24.9
Q ss_pred cccchhHHHHHHHHH-h---cCCCcHHHHHHHH
Q 024196 98 RGLRQFSMKVCEKVE-S---KGRTTYNEVADEL 126 (271)
Q Consensus 98 ~GLR~fS~KVcekVk-~---kg~TTYnEVAdeL 126 (271)
.|+-.|-.+|++.|. . ..++||.+||..+
T Consensus 87 ~g~t~Fq~~V~~~l~~~IP~G~~~TYg~iA~~~ 119 (174)
T 1mgt_A 87 EGVTPFEKKVYEWLTKNVKRGSVITYGDLAKAL 119 (174)
T ss_dssp TTCCHHHHHHHHHHHHHSCTTCCEEHHHHHHHT
T ss_pred cCCChHHHHHHHHHHccCCCCceEeHHHHHHHh
Confidence 456789999999998 5 7789999999887
No 173
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=28.80 E-value=99 Score=22.56 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee--cCCceEEe
Q 024196 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (271)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K--~Kk~i~W~ 177 (271)
++...+...+..+..|+|+.| ..-+-.|+--+++|+.. +|.+ .++.+.|.
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l---------------------~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~ 82 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQIL---------------------KLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYS 82 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHH---------------------TCCHHHHHHHHHHHBTT-TBEEEEETTEEEEE
T ss_pred HHHHHHHHCCCcCHHHHHHHH---------------------CcCHHHHHHHHHHHHHH-hhhheEeCcEEEEE
Confidence 455444556789999999998 23355788889999999 9985 55555554
No 174
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=28.57 E-value=50 Score=29.14 Aligned_cols=47 Identities=6% Similarity=0.009 Sum_probs=34.9
Q ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 106 KVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 106 KVcekVk~k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.|.+.+... +..|+.|+|+.+= .+ ..-.++++.+|.+|.++|++++.
T Consensus 40 gif~~L~~~~~~~t~~ela~~~~------------~~------~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 40 NIPNIIQNHGKPISLSNLVSILQ------------VP------SSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp THHHHHHHHTSCEEHHHHHHHHT------------CC------GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ChhhhhhhcCCCccHHHHHHHhC------------cC------CCChHHHHHHHHHHHhCCeEEEe
Confidence 456777664 5899999999870 00 01257899999999999999986
No 175
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=28.42 E-value=87 Score=23.76 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 115 GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 115 g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
+..+-.|+|+.+ ..-++-|+.+++.|...|+|+..
T Consensus 25 ~~~s~~ela~~~---------------------~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 25 GPTSLKSIAQTN---------------------NLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp CCBCHHHHHHHT---------------------TSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CcCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCceEec
Confidence 467777777776 35688999999999999999874
No 176
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=27.99 E-value=64 Score=25.81 Aligned_cols=34 Identities=18% Similarity=0.034 Sum_probs=27.7
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceEEe
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWK 177 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W~ 177 (271)
+.-....|..|.-+++-|+.-|+|++.++.|.-.
T Consensus 184 A~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 217 (227)
T 3d0s_A 184 AQLVGASRETVNKALADFAHRGWIRLEGKSVLIS 217 (227)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred HHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEc
Confidence 3334567889999999999999999988887743
No 177
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=27.98 E-value=62 Score=26.59 Aligned_cols=34 Identities=26% Similarity=0.128 Sum_probs=28.1
Q ss_pred hhhccccchhhhhhHHHHhhhccceeecCCceEE
Q 024196 143 QQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (271)
Q Consensus 143 ~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W 176 (271)
-+.-....|..|.-+++-|+.-|+|+..++.|.-
T Consensus 199 lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 199 IAEAIGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 3444467799999999999999999998888763
No 178
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=26.99 E-value=46 Score=29.45 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=35.4
Q ss_pred HHHHHHHHhc-CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 105 MKVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 105 ~KVcekVk~k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
..|.+.+... +..|+.|+|+.+ + .+ ..-.++++.+|.+|.++||+++.
T Consensus 33 lgif~~L~~~~~~~t~~eLA~~~-----g-------~~------~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 33 LGIADAIHNHGKPMTLSELASSL-----K-------LH------PSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HTHHHHHHHHTSCEEHHHHHHHT-----T-------CC------TTTHHHHHHHHHHHHHTTSEEEE
T ss_pred CChHhHHhhcCCCcCHHHHHHhc-----C-------CC------CcchHHHHHHHHHHhhCCcEEEe
Confidence 3466777664 589999999887 0 00 01257899999999999999986
No 179
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.88 E-value=53 Score=26.80 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=23.9
Q ss_pred ccchh-hhhhHHHHhhhccceeecCCceE
Q 024196 148 KNIRR-RVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 148 K~ikR-RVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
...|| .|.-+++-|+.-|+|++.++.|.
T Consensus 180 G~sr~etvsR~l~~l~~~glI~~~~~~i~ 208 (238)
T 2bgc_A 180 GIAHSSAVSRIISKLKQEKVIVYKNSCFY 208 (238)
T ss_dssp TCCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCChHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 45564 89999999999999999888776
No 180
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.49 E-value=87 Score=30.20 Aligned_cols=31 Identities=10% Similarity=0.157 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 190 LKAERLGLRNRIEKKTAYLQELEDQFVGLQN 220 (271)
Q Consensus 190 Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lkn 220 (271)
.-+|+.+++..|......+.+|..+......
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 119 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQ 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544443333
No 181
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=25.96 E-value=56 Score=24.83 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=43.6
Q ss_pred cccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhcccee
Q 024196 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIIS 168 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~ 168 (271)
-.|...+.-|.+.+ -|..|-.+|+++|.++|..+ ...+..+|...|..|..-|+|+
T Consensus 39 i~Ln~~a~~Iw~l~--DG~rtv~eIv~~L~~~y~~~-------------~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 39 VELDDIALVVAQRY--DGTQSLAQIAQTLAAEFDAD-------------ASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp CCCCTHHHHHHHHC--CSSSCHHHHHHHHHHHTTCC-------------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred eecCHHHHHHHHHc--cCCCCHHHHHHHHHHHcCCc-------------HHHHHHHHHHHHHHHHHCcCEe
Confidence 34666777776654 67888999999999888652 2467889999999999988875
No 182
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=25.91 E-value=72 Score=26.61 Aligned_cols=32 Identities=25% Similarity=0.137 Sum_probs=26.7
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
+.-....|..|.-+++-|+.-|+|+..++.|.
T Consensus 224 A~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~ 255 (260)
T 3kcc_A 224 GQIVGCSRETVGRILKMLEDQNLISAHGKTIV 255 (260)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 33445678899999999999999999888775
No 183
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Probab=25.88 E-value=32 Score=29.36 Aligned_cols=26 Identities=15% Similarity=0.430 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHh---cCCCcHHHHHHHH
Q 024196 101 RQFSMKVCEKVES---KGRTTYNEVADEL 126 (271)
Q Consensus 101 R~fS~KVcekVk~---kg~TTYnEVAdeL 126 (271)
-.|..+|++.|.. ..++||.+||..|
T Consensus 95 t~Fq~~V~~~l~~IP~G~~~tYg~iA~~~ 123 (180)
T 1sfe_A 95 TAFQQQVWQALRTIPCGETVSYQQLANAI 123 (180)
T ss_dssp CHHHHHHHHHHTTSCTTCCEEHHHHHHHT
T ss_pred ChHHHHHHHHHhcCCCCCeEeHHHHHHHh
Confidence 4689999999988 7789999999887
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.87 E-value=1.4e+02 Score=28.06 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVG 217 (271)
Q Consensus 185 ~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~ 217 (271)
.+++.|+++...+++.|++.+..+.+|..+...
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777665543
No 185
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.56 E-value=1.9e+02 Score=25.31 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN 225 (271)
Q Consensus 187 ~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~RN 225 (271)
++.|..|...|.++++.+...+..|..|..++++-+.+|
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~ 60 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKEL 60 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455666555555555555555555555555555444444
No 186
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=24.75 E-value=71 Score=28.17 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCceE
Q 024196 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (271)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~ 175 (271)
|.+.+. .+..|+.|+|..+ ..-.+.++.+|.+|.++||+++....|.
T Consensus 47 lf~~l~-~g~~t~~elA~~~---------------------g~~~~~l~rlLr~l~~~g~l~~~~~~y~ 93 (348)
T 3lst_A 47 VADHLV-DGPRTPAELAAAT---------------------GTDADALRRVLRLLAVRDVVRESDGRFA 93 (348)
T ss_dssp GGGGGT-TSCBCHHHHHHHH---------------------TCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred chhHhh-CCCCCHHHHHHHh---------------------CcCHHHHHHHHHHHHhCCCEEecCCEEe
Confidence 444443 4688999999987 1234679999999999999999544443
No 187
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.21 E-value=1.7e+02 Score=19.87 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 184 LNDIEELKAERLGLRNRIEKKTAYLQELED 213 (271)
Q Consensus 184 ~~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~ 213 (271)
.+.++.+-.|..+-+++|...+..|.+|..
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777666677666666666653
No 188
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=24.15 E-value=80 Score=20.80 Aligned_cols=33 Identities=27% Similarity=0.232 Sum_probs=25.1
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhh
Q 024196 114 KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMA 163 (271)
Q Consensus 114 kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~a 163 (271)
-...||.|||+.| .....+++++++.++.-|..
T Consensus 29 ~~g~s~~eIA~~l-----------------gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 29 LLGLSYADAAAVC-----------------GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSCCCHHHHHHHH-----------------TSCHHHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHH-----------------CcCHHHHHHHHHHHHHHHHH
Confidence 3457999999998 11346889999999888764
No 189
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=23.94 E-value=68 Score=25.71 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=28.8
Q ss_pred hhhccccchhhhhhHHHHhhhccceeecCCceEEe
Q 024196 143 QQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWK 177 (271)
Q Consensus 143 ~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W~ 177 (271)
-+.-....|..|.-+++-|+.-|+|+..++.|.-.
T Consensus 186 lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 220 (232)
T 2gau_A 186 LATLSNMTVSNAIRTLSTFVSERMLALDGKRIKII 220 (232)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEe
Confidence 34445677999999999999999999988887744
No 190
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.87 E-value=67 Score=23.04 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.4
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhh
Q 024196 114 KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMA 163 (271)
Q Consensus 114 kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~a 163 (271)
-.-.||.|||+.| .....++|.|++-++.-|..
T Consensus 51 ~~g~s~~eIA~~l-----------------gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 51 YRGWSTAQIATDL-----------------GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCCCHHHHHHHH-----------------TSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-----------------CcCHHHHHHHHHHHHHHHHH
Confidence 4457899999998 12347899999999888764
No 191
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=23.33 E-value=37 Score=28.93 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHh---cCCCcHHHHHHHH
Q 024196 101 RQFSMKVCEKVES---KGRTTYNEVADEL 126 (271)
Q Consensus 101 R~fS~KVcekVk~---kg~TTYnEVAdeL 126 (271)
-.|-.+|++.|.. ..++||.+||..+
T Consensus 78 t~Fq~~Vw~~l~~IP~G~t~TYg~iA~~~ 106 (167)
T 2g7h_A 78 PEFTKKVLDIVKDIEFGKTLTYGDIAKKL 106 (167)
T ss_dssp SSCCHHHHHHHTTCCTTCCEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEeeHHHHHHHh
Confidence 4588999999988 7789999999998
No 192
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=23.27 E-value=54 Score=25.78 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=27.9
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCceEEe
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWK 177 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W~ 177 (271)
+.-....+..|.-+++-|+.-|+|++.++.|.-.
T Consensus 146 A~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 179 (195)
T 3b02_A 146 ADATASIRESVSKVLADLRREGLIATAYRRVYLL 179 (195)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEEC
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 4445667899999999999999999988877643
No 193
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=23.12 E-value=2e+02 Score=21.67 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 024196 188 EELKAERLGLRNRIEKKTAYLQELEDQFVG-LQNLIQRNERL 228 (271)
Q Consensus 188 ~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~-lknLI~RNk~l 228 (271)
++|-+.+.+++..|.+|..++.||.+=... |-..|+.+=.+
T Consensus 17 eELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~i 58 (75)
T 3tso_C 17 EEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSI 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 345555555666677777777777653332 23455565443
No 194
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.72 E-value=2.6e+02 Score=21.35 Aligned_cols=32 Identities=13% Similarity=-0.147 Sum_probs=24.3
Q ss_pred hhccccchhhhhhHHHHhhhccceee-cCCceE
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQ 175 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K-~Kk~i~ 175 (271)
+.....-|--|-.|+..|+.-|+|++ .++...
T Consensus 44 a~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
T 3neu_A 44 GVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 33345668889999999999999999 444443
No 195
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=22.69 E-value=83 Score=25.51 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=26.0
Q ss_pred ccccchhhhhhHHHHhhhccceeecCCceEE
Q 024196 146 DEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176 (271)
Q Consensus 146 d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W 176 (271)
-....|..|.-+++-|+.-|+|+..++.|.-
T Consensus 195 ~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I 225 (232)
T 1zyb_A 195 CLDDTRLNISKTLNELQDNGLIELHRKEILI 225 (232)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSCEEETTEEEE
T ss_pred HhCCChhHHHHHHHHHHHCCCEEecCCEEEE
Confidence 3356788999999999999999998877753
No 196
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=22.42 E-value=95 Score=22.14 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccc-cchhhhhhHHHHhhhccc
Q 024196 108 CEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEK-NIRRRVYDALNVLMAMDI 166 (271)
Q Consensus 108 cekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K-~ikRRVYD~lNVL~ai~l 166 (271)
.++-+++|..||.||.+.|-.. .. .--..+.+++..|+..||
T Consensus 15 i~~gK~~G~lTy~EI~d~l~~~-----------------~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 15 ISLGKKKGYITYEDIDKAFPPD-----------------FEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHSSCBHHHHHHHCSCS-----------------CSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHhHcCCccHHHHHHhCccc-----------------cccCCHHHHHHHHHHHHHCCC
Confidence 3444668899999997775100 00 112467777788886553
No 197
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1eh7_A 1eh8_A*
Probab=22.15 E-value=47 Score=29.02 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.7
Q ss_pred hhHHHH-HHHHHh---cCCCcHHHHHHHH
Q 024196 102 QFSMKV-CEKVES---KGRTTYNEVADEL 126 (271)
Q Consensus 102 ~fS~KV-cekVk~---kg~TTYnEVAdeL 126 (271)
.|..+| .+.|.. ..++||.+||..|
T Consensus 93 ~Fq~~V~~~~l~~IP~G~~~TYg~iA~~~ 121 (207)
T 1eh6_A 93 SFTRQVLWKLLKVVKFGEVISYQQLAALA 121 (207)
T ss_dssp CHHHHHHHHHHHHCCTTCCEEHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCCcEECHHHHHHHH
Confidence 588899 888877 8899999999887
No 198
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.90 E-value=1.1e+02 Score=24.36 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=27.0
Q ss_pred hhccccchhhhhhHHHHhhhccceeec-CCceEE
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKD-KKEIQW 176 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~-Kk~i~W 176 (271)
+.-....|..|.-+++-|+.-|+|++. ++.|.-
T Consensus 174 A~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i 207 (220)
T 2fmy_A 174 ALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLL 207 (220)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEE
T ss_pred HHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEE
Confidence 333467789999999999999999996 886664
No 199
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=21.83 E-value=2e+02 Score=25.91 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=44.3
Q ss_pred HHHHHHHHHh--cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccc-eee-cCCceEEecC
Q 024196 104 SMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDI-ISK-DKKEIQWKGL 179 (271)
Q Consensus 104 S~KVcekVk~--kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~l-I~K-~Kk~i~W~G~ 179 (271)
..++.+.+++ ....|-.|+|++| ..-|.-|+..++.|+..|+ |+. .++.|+....
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~l---------------------gvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESL---------------------NISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHH---------------------TSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHH---------------------CCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 4567888864 3478999999998 3668999999999999998 665 6778887764
Q ss_pred C
Q 024196 180 P 180 (271)
Q Consensus 180 ~ 180 (271)
+
T Consensus 64 ~ 64 (323)
T 3rkx_A 64 P 64 (323)
T ss_dssp C
T ss_pred c
Confidence 3
No 200
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=21.69 E-value=99 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=25.3
Q ss_pred cchhhhhhHHHHhhhccceee----cCCceEEecCCCC
Q 024196 149 NIRRRVYDALNVLMAMDIISK----DKKEIQWKGLPRT 182 (271)
Q Consensus 149 ~ikRRVYD~lNVL~ai~lI~K----~Kk~i~W~G~~~~ 182 (271)
.-+=.|=-+++-|+.-|+|+| ...+...+-+...
T Consensus 432 ~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~ 469 (487)
T 1hsj_A 432 FKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDT 469 (487)
T ss_dssp CCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSS
T ss_pred CCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHH
Confidence 446677889999999999998 3467777666443
No 201
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.60 E-value=2.2e+02 Score=22.01 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024196 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERL 228 (271)
Q Consensus 187 ~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~RNk~l 228 (271)
++.|.+....++..+.....++..|......++.+++-=+.+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666666666666555533333
No 202
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.55 E-value=2.1e+02 Score=25.31 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 024196 187 IEELKAERLGLRNRIEKKT---AYLQELEDQFVGLQNLIQ 223 (271)
Q Consensus 187 ~~~Lk~E~~~l~e~I~~Kk---~~LqEL~~Q~~~lknLI~ 223 (271)
.+.|..++..+++.|...+ ..|++|..+...|-++|+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~ 156 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIE 156 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433322 333344444444444444
No 203
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=21.17 E-value=57 Score=29.07 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHHhcC-C---CcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196 106 KVCEKVESKG-R---TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (271)
Q Consensus 106 KVcekVk~kg-~---TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~ 170 (271)
.|.+.+...+ . .|+.|+|..+=.+ . .. ..-.++++.+|.+|.++||+++.
T Consensus 48 gif~~L~~~g~pg~~~t~~eLA~~~~~~--~-----~~--------~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 48 NLFEIIAKATPPGAFMSPSEIASKLPAS--T-----QH--------SDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp THHHHHHTCSSTTCCBCHHHHHTTSCGG--G-----CC--------TTHHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHhcCCCCCCcCHHHHHHhcCCC--C-----CC--------CcChHHHHHHHHHHhhCCceEec
Confidence 4667777654 5 8888888775000 0 00 01357899999999999999985
No 204
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.14 E-value=74 Score=21.47 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhh
Q 024196 115 GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMA 163 (271)
Q Consensus 115 g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~a 163 (271)
...||.|||+.| .....+++++++-++.-|..
T Consensus 24 ~g~s~~eIA~~l-----------------gis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 24 TDYTLEEVGKQF-----------------DVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp SCCCHHHHHHHH-----------------TCCHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHH-----------------CcCHHHHHHHHHHHHHHHHH
Confidence 468999999998 11346889999998887764
No 205
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.82 E-value=2.5e+02 Score=20.55 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=33.3
Q ss_pred chhhhhhHHHHhhhccceeecCCceEEecCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 150 IRRRVYDALNVLMAMDIISKDKKEIQWKGLP---RTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQ 219 (271)
Q Consensus 150 ikRRVYD~lNVL~ai~lI~K~Kk~i~W~G~~---~~s~~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lk 219 (271)
..+..-+++.=| ..+.-+.+.++-+|-- .....-...|......+...|+....++..+..+...++
T Consensus 30 ~~~e~~~~~~EL---~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 30 QINETQKALEEL---SRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHH---HHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 4444455555556531 111223344555555566666666666666655554444
No 206
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=20.78 E-value=2.9e+02 Score=21.19 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024196 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNE 226 (271)
Q Consensus 186 ~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~RNk 226 (271)
.+...+.++..+...++.++..|.+-......|..|.+|-.
T Consensus 82 ~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~ 122 (150)
T 3ajw_A 82 AIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQT 122 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677778888888888888888888887543
No 207
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.66 E-value=1.3e+02 Score=20.28 Aligned_cols=15 Identities=53% Similarity=0.849 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 024196 207 YLQELEDQFVGLQNL 221 (271)
Q Consensus 207 ~LqEL~~Q~~~lknL 221 (271)
++|||...-..++||
T Consensus 11 yiqeleernaelknl 25 (46)
T 3he4_B 11 YIQELEERNAELKNL 25 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHhH
Confidence 334443333333333
No 208
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=20.41 E-value=2.3e+02 Score=21.10 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=41.5
Q ss_pred cccchhHHHHHHHHHh--cCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 98 RGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 98 ~GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
.||-.--..|+..|.+ ..-+|-.|+|+.+ ..-+.-|-=+|.-||.-|+|.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~---------------------~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKS---------------------NLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHT---------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHH---------------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 6777777889999998 4479999999987 2335668889999999999994
No 209
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=20.37 E-value=27 Score=27.89 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (271)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K 169 (271)
+..+-.++...++..+..++.|+|++| ..-+--|..++..|+.-|+|++
T Consensus 11 ~d~l~~~Il~~l~~~~~ls~~eLa~~l---------------------gvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRV---------------------GLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSS---------------------SCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHH---------------------CcCHHHHHHHHHHHHHCCcEEE
Confidence 556666777777777777887777776 2345556678899999999986
No 210
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=20.15 E-value=1.1e+02 Score=24.31 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=25.5
Q ss_pred hhccccchhhhhhHHHHhhhccceeecCCce
Q 024196 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEI 174 (271)
Q Consensus 144 ~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i 174 (271)
+.-....|..|.-+++-|+.-|+|+..++.|
T Consensus 170 A~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i 200 (222)
T 1ft9_A 170 ANLIGSSRQTTSTALNSLIKEGYISRQGRGH 200 (222)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTSSEECSTTC
T ss_pred HHHhCCcHHHHHHHHHHHHHCCcEEEcCCce
Confidence 3334567889999999999999999977774
No 211
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=20.07 E-value=57 Score=22.40 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhh
Q 024196 115 GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLM 162 (271)
Q Consensus 115 g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ 162 (271)
...||.|||+.| .....+++++++.|+.-|.
T Consensus 29 ~~~s~~eIA~~l-----------------~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYF-----------------GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHH-----------------TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-----------------CCCHHHHHHHHHHHHHHHH
Confidence 468999999998 1134688999999998886
Done!