Query 024197
Match_columns 271
No_of_seqs 59 out of 61
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 02:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2991 Splicing regulator [RN 100.0 3.4E-85 7.5E-90 599.7 22.9 256 9-271 6-261 (330)
2 KOG0999 Microtubule-associated 96.7 0.097 2.1E-06 54.3 16.7 181 65-266 39-221 (772)
3 TIGR02169 SMC_prok_A chromosom 96.3 0.13 2.8E-06 53.6 15.4 35 64-98 676-710 (1164)
4 PRK02224 chromosome segregatio 96.0 1.3 2.8E-05 46.0 20.9 49 119-167 252-300 (880)
5 PF00038 Filament: Intermediat 96.0 1.1 2.5E-05 40.8 18.1 43 60-102 52-94 (312)
6 PF04012 PspA_IM30: PspA/IM30 95.8 0.53 1.1E-05 41.3 14.8 174 63-260 31-217 (221)
7 PF08614 ATG16: Autophagy prot 95.2 0.027 5.9E-07 49.2 4.5 120 110-240 59-178 (194)
8 PF12128 DUF3584: Protein of u 95.2 0.52 1.1E-05 51.6 15.1 147 66-213 604-758 (1201)
9 TIGR01010 BexC_CtrB_KpsE polys 94.9 3.5 7.5E-05 38.8 18.6 165 90-269 113-301 (362)
10 TIGR02168 SMC_prok_B chromosom 94.8 4.3 9.3E-05 42.3 19.6 33 64-96 672-704 (1179)
11 KOG0161 Myosin class II heavy 94.7 2.6 5.7E-05 49.1 19.3 182 65-270 1332-1536(1930)
12 TIGR02169 SMC_prok_A chromosom 94.5 1.1 2.3E-05 47.0 14.6 29 68-96 673-701 (1164)
13 TIGR03007 pepcterm_ChnLen poly 94.4 5.4 0.00012 38.9 20.4 92 70-167 162-268 (498)
14 COG1196 Smc Chromosome segrega 94.3 1.7 3.8E-05 47.4 16.0 34 183-216 789-822 (1163)
15 PF00038 Filament: Intermediat 93.9 2 4.4E-05 39.2 13.5 76 131-206 3-94 (312)
16 TIGR03017 EpsF chain length de 93.8 6.6 0.00014 37.5 17.4 120 108-236 138-298 (444)
17 KOG0963 Transcription factor/C 93.7 7.4 0.00016 40.9 18.6 193 66-265 193-430 (629)
18 TIGR00606 rad50 rad50. This fa 93.6 5.9 0.00013 44.0 18.7 187 63-263 896-1092(1311)
19 PF15619 Lebercilin: Ciliary p 93.6 5.2 0.00011 35.9 16.6 165 67-243 17-187 (194)
20 KOG4677 Golgi integral membran 93.3 2.3 5E-05 43.5 13.8 42 122-163 214-255 (554)
21 TIGR00634 recN DNA repair prot 93.3 5 0.00011 40.5 16.2 87 176-265 260-365 (563)
22 PF09726 Macoilin: Transmembra 93.0 6.6 0.00014 41.5 17.2 180 78-263 420-632 (697)
23 cd09237 V_ScBro1_like Protein- 92.8 9 0.0002 36.5 18.1 202 56-269 67-284 (356)
24 PF13851 GAS: Growth-arrest sp 92.6 3.3 7.2E-05 37.0 12.6 97 129-240 31-127 (201)
25 PRK03918 chromosome segregatio 92.6 15 0.00032 38.2 21.1 50 119-168 232-281 (880)
26 COG1842 PspA Phage shock prote 92.6 6.9 0.00015 36.0 14.8 143 63-207 32-186 (225)
27 KOG0977 Nuclear envelope prote 92.2 9.1 0.0002 39.7 16.5 125 118-242 28-177 (546)
28 PF09730 BicD: Microtubule-ass 92.1 1.5 3.2E-05 46.6 11.2 114 134-265 22-147 (717)
29 PRK09841 cryptic autophosphory 92.1 13 0.00028 38.8 17.9 145 107-265 233-389 (726)
30 PF05701 WEMBL: Weak chloropla 92.1 6.4 0.00014 39.7 15.2 79 77-169 282-360 (522)
31 PHA02562 46 endonuclease subun 91.9 14 0.0003 36.3 20.4 16 150-165 303-318 (562)
32 KOG4593 Mitotic checkpoint pro 91.6 22 0.00047 38.1 18.9 186 75-267 68-269 (716)
33 COG1196 Smc Chromosome segrega 91.0 19 0.00041 39.6 18.4 29 64-92 676-704 (1163)
34 KOG0933 Structural maintenance 90.8 18 0.00039 40.4 17.6 136 122-270 795-937 (1174)
35 TIGR00606 rad50 rad50. This fa 90.7 6.3 0.00014 43.7 14.6 28 145-172 791-818 (1311)
36 PF09730 BicD: Microtubule-ass 90.6 7.8 0.00017 41.3 14.6 50 121-170 72-121 (717)
37 TIGR03007 pepcterm_ChnLen poly 90.5 3.8 8.1E-05 39.9 11.5 25 214-238 269-293 (498)
38 TIGR02977 phageshock_pspA phag 90.4 10 0.00022 33.9 13.2 170 63-261 32-216 (219)
39 TIGR01843 type_I_hlyD type I s 89.8 17 0.00036 33.8 16.1 15 77-91 82-96 (423)
40 PF04111 APG6: Autophagy prote 89.2 4.2 9.2E-05 38.6 10.5 124 73-210 5-129 (314)
41 PF13514 AAA_27: AAA domain 89.1 39 0.00085 37.0 21.1 97 67-171 678-775 (1111)
42 PF05911 DUF869: Plant protein 88.7 18 0.00039 38.9 15.6 148 117-269 595-756 (769)
43 COG4942 Membrane-bound metallo 88.4 27 0.00058 35.3 15.7 66 76-156 38-104 (420)
44 PF12325 TMF_TATA_bd: TATA ele 88.3 14 0.00031 31.0 13.0 105 54-169 8-112 (120)
45 PF09789 DUF2353: Uncharacteri 88.2 18 0.00039 35.2 14.0 155 63-270 73-227 (319)
46 PF08317 Spc7: Spc7 kinetochor 88.1 24 0.00052 33.4 16.9 54 189-247 218-271 (325)
47 KOG0933 Structural maintenance 88.0 18 0.00039 40.4 15.2 88 135-240 769-856 (1174)
48 PHA02562 46 endonuclease subun 87.9 29 0.00062 34.1 20.5 21 117-137 298-318 (562)
49 TIGR01005 eps_transp_fam exopo 87.5 22 0.00048 36.8 15.1 52 187-243 288-340 (754)
50 PRK09039 hypothetical protein; 87.1 30 0.00064 33.4 15.1 25 189-213 139-163 (343)
51 PF09726 Macoilin: Transmembra 86.8 47 0.001 35.4 17.9 55 115-169 429-483 (697)
52 KOG4674 Uncharacterized conser 86.4 78 0.0017 37.5 19.6 83 64-166 1259-1341(1822)
53 PRK10698 phage shock protein P 86.4 25 0.00055 31.9 13.9 171 62-262 31-217 (222)
54 KOG0161 Myosin class II heavy 86.3 75 0.0016 37.8 19.6 147 124-270 1142-1311(1930)
55 PRK11519 tyrosine kinase; Prov 86.3 46 0.001 34.8 18.0 147 108-267 234-391 (719)
56 PF06818 Fez1: Fez1; InterPro 86.0 16 0.00035 33.5 11.8 36 130-172 15-50 (202)
57 KOG0996 Structural maintenance 85.9 31 0.00068 39.1 15.7 146 66-216 402-550 (1293)
58 PRK09039 hypothetical protein; 85.5 7.6 0.00017 37.3 9.9 32 61-92 65-97 (343)
59 TIGR01000 bacteriocin_acc bact 85.4 39 0.00084 33.1 15.6 68 145-212 242-316 (457)
60 PRK03918 chromosome segregatio 84.8 54 0.0012 34.2 19.1 11 116-126 590-600 (880)
61 cd09238 V_Alix_like_1 Protein- 84.7 38 0.00081 32.4 18.6 195 59-270 76-275 (339)
62 KOG0977 Nuclear envelope prote 84.6 47 0.001 34.7 15.6 87 52-139 101-190 (546)
63 PF14662 CCDC155: Coiled-coil 84.6 32 0.0007 31.5 14.8 132 115-261 5-138 (193)
64 PRK10869 recombination and rep 84.6 50 0.0011 33.7 17.9 84 181-266 259-361 (553)
65 PF05557 MAD: Mitotic checkpoi 84.5 11 0.00024 39.2 11.3 56 188-243 511-582 (722)
66 TIGR02231 conserved hypothetic 84.5 9.6 0.00021 37.9 10.5 102 62-166 71-172 (525)
67 PRK04778 septation ring format 84.1 52 0.0011 33.5 18.7 82 185-266 402-489 (569)
68 PF15070 GOLGA2L5: Putative go 84.0 18 0.00038 37.9 12.5 74 127-204 31-104 (617)
69 PRK09841 cryptic autophosphory 83.3 36 0.00078 35.6 14.4 120 71-206 269-389 (726)
70 KOG0996 Structural maintenance 83.1 37 0.00079 38.6 14.8 148 117-268 826-978 (1293)
71 cd09236 V_AnPalA_UmRIM20_like 82.0 49 0.0011 31.7 17.9 193 62-269 78-288 (353)
72 PF05667 DUF812: Protein of un 81.5 74 0.0016 33.3 15.9 50 175-234 384-433 (594)
73 PF05911 DUF869: Plant protein 81.2 42 0.0009 36.3 14.1 115 123-267 587-701 (769)
74 PF03915 AIP3: Actin interacti 80.5 3.3 7E-05 41.5 5.5 175 56-267 60-260 (424)
75 KOG0946 ER-Golgi vesicle-tethe 79.9 36 0.00078 37.5 13.1 84 133-220 800-888 (970)
76 cd08915 V_Alix_like Protein-in 79.9 54 0.0012 30.8 18.2 191 63-269 78-277 (342)
77 PRK04863 mukB cell division pr 79.7 1.1E+02 0.0024 35.4 17.6 78 186-268 1019-1096(1486)
78 PRK02224 chromosome segregatio 79.7 85 0.0018 33.0 20.3 27 66-92 472-498 (880)
79 PRK10884 SH3 domain-containing 79.5 11 0.00024 34.2 8.0 17 191-207 143-159 (206)
80 KOG0971 Microtubule-associated 79.4 58 0.0013 36.5 14.5 149 81-243 901-1049(1243)
81 PF01576 Myosin_tail_1: Myosin 79.3 0.6 1.3E-05 49.8 0.0 40 64-103 273-312 (859)
82 TIGR01843 type_I_hlyD type I s 79.1 55 0.0012 30.4 16.0 30 186-215 245-274 (423)
83 PF07888 CALCOCO1: Calcium bin 78.6 90 0.002 32.7 18.8 47 116-162 190-236 (546)
84 TIGR03185 DNA_S_dndD DNA sulfu 78.4 86 0.0019 32.3 21.5 54 182-238 386-439 (650)
85 PF07888 CALCOCO1: Calcium bin 78.3 92 0.002 32.6 18.8 37 227-263 371-409 (546)
86 KOG0964 Structural maintenance 77.8 1.3E+02 0.0028 34.1 18.6 92 117-208 712-806 (1200)
87 PRK11519 tyrosine kinase; Prov 77.6 59 0.0013 34.0 13.7 123 69-206 267-389 (719)
88 PF12795 MscS_porin: Mechanose 76.8 57 0.0012 29.4 19.4 107 59-167 15-134 (240)
89 COG2433 Uncharacterized conser 76.3 42 0.00092 35.7 12.1 94 137-259 413-508 (652)
90 PF08826 DMPK_coil: DMPK coile 75.9 16 0.00035 27.6 6.8 46 115-160 15-60 (61)
91 PF10174 Cast: RIM-binding pro 75.8 1.2E+02 0.0027 32.8 20.3 42 60-101 126-167 (775)
92 PF11365 DUF3166: Protein of u 75.8 35 0.00076 28.0 9.2 43 126-169 2-45 (96)
93 PF06785 UPF0242: Uncharacteri 75.6 40 0.00087 33.7 11.1 90 150-265 96-185 (401)
94 PF09486 HrpB7: Bacterial type 75.5 33 0.00071 30.3 9.6 92 66-163 26-117 (158)
95 PF05701 WEMBL: Weak chloropla 75.5 98 0.0021 31.4 19.0 93 71-168 206-303 (522)
96 TIGR01005 eps_transp_fam exopo 74.7 1.1E+02 0.0024 31.8 19.9 27 71-97 196-222 (754)
97 PRK04778 septation ring format 74.6 94 0.002 31.7 14.0 172 57-240 312-496 (569)
98 KOG0978 E3 ubiquitin ligase in 74.2 48 0.001 35.6 12.1 110 120-247 512-621 (698)
99 PF09787 Golgin_A5: Golgin sub 73.8 1.1E+02 0.0023 31.0 16.9 89 75-163 108-204 (511)
100 PF06120 Phage_HK97_TLTM: Tail 73.0 94 0.002 30.1 12.8 72 57-134 69-140 (301)
101 PF05837 CENP-H: Centromere pr 72.5 50 0.0011 26.7 10.9 53 154-213 32-84 (106)
102 PRK04863 mukB cell division pr 72.4 2E+02 0.0043 33.6 19.4 20 192-211 440-459 (1486)
103 PRK10884 SH3 domain-containing 72.4 51 0.0011 30.0 10.3 84 177-266 83-166 (206)
104 PF10205 KLRAQ: Predicted coil 72.3 21 0.00046 29.7 7.2 72 153-242 5-76 (102)
105 cd09235 V_Alix Middle V-domain 72.0 94 0.002 29.7 17.4 193 60-270 74-275 (339)
106 PRK11281 hypothetical protein; 71.8 1.4E+02 0.003 33.8 15.3 134 134-270 75-216 (1113)
107 PF07106 TBPIP: Tat binding pr 71.8 48 0.001 28.2 9.6 53 185-240 77-129 (169)
108 PF15397 DUF4618: Domain of un 71.5 95 0.0021 29.5 18.4 173 63-269 36-223 (258)
109 PLN03229 acetyl-coenzyme A car 71.3 44 0.00095 36.2 11.0 140 62-235 369-519 (762)
110 PF10498 IFT57: Intra-flagella 70.9 1.1E+02 0.0024 30.0 13.1 105 122-240 242-348 (359)
111 PF06657 Cep57_MT_bd: Centroso 70.6 39 0.00084 26.4 8.0 60 184-243 14-73 (79)
112 PF11365 DUF3166: Protein of u 70.5 22 0.00047 29.2 6.9 64 185-253 13-90 (96)
113 PF05529 Bap31: B-cell recepto 70.5 42 0.00091 29.1 9.1 24 145-168 117-140 (192)
114 PF05557 MAD: Mitotic checkpoi 70.4 5.6 0.00012 41.4 4.3 89 76-168 305-393 (722)
115 KOG4593 Mitotic checkpoint pro 70.1 1.7E+02 0.0036 31.8 19.5 109 150-269 204-315 (716)
116 PF08317 Spc7: Spc7 kinetochor 70.1 1E+02 0.0022 29.3 13.4 26 187-212 209-234 (325)
117 PRK11637 AmiB activator; Provi 69.6 1.1E+02 0.0025 29.7 22.6 37 123-159 87-123 (428)
118 smart00787 Spc7 Spc7 kinetocho 69.5 94 0.002 29.9 12.0 50 189-243 213-262 (312)
119 PF12128 DUF3584: Protein of u 68.5 2E+02 0.0044 32.1 20.1 60 66-131 729-788 (1201)
120 PF02403 Seryl_tRNA_N: Seryl-t 68.3 56 0.0012 25.6 9.0 72 141-212 24-99 (108)
121 COG0419 SbcC ATPase involved i 68.0 1.8E+02 0.0039 31.3 20.5 36 116-151 584-619 (908)
122 TIGR01010 BexC_CtrB_KpsE polys 67.8 1.1E+02 0.0024 28.8 14.6 126 72-210 173-301 (362)
123 KOG4571 Activating transcripti 67.4 12 0.00026 36.2 5.5 42 222-268 250-291 (294)
124 PF08372 PRT_C: Plant phosphor 67.0 15 0.00033 32.3 5.7 60 26-100 31-90 (156)
125 TIGR02473 flagell_FliJ flagell 66.6 65 0.0014 25.8 12.1 83 126-210 14-98 (141)
126 smart00787 Spc7 Spc7 kinetocho 66.5 1.3E+02 0.0027 29.0 14.4 112 87-210 129-241 (312)
127 KOG2991 Splicing regulator [RN 66.0 91 0.002 30.4 11.0 93 109-210 208-301 (330)
128 KOG0999 Microtubule-associated 65.9 1.5E+02 0.0033 31.8 13.3 42 128-169 152-193 (772)
129 PF13949 ALIX_LYPXL_bnd: ALIX 65.5 1.1E+02 0.0023 27.7 19.0 190 63-269 30-227 (296)
130 PF07106 TBPIP: Tat binding pr 65.4 27 0.00059 29.7 6.8 49 149-208 89-137 (169)
131 PF06548 Kinesin-related: Kine 64.9 24 0.00053 36.2 7.3 98 152-270 228-333 (488)
132 smart00806 AIP3 Actin interact 64.9 91 0.002 31.7 11.3 98 153-268 155-265 (426)
133 PF02050 FliJ: Flagellar FliJ 64.7 57 0.0012 24.4 9.7 80 129-211 2-83 (123)
134 PF12729 4HB_MCP_1: Four helix 64.4 67 0.0015 25.1 12.5 96 148-243 70-173 (181)
135 PF07851 TMPIT: TMPIT-like pro 63.5 91 0.002 30.6 10.7 91 115-224 8-98 (330)
136 PF10267 Tmemb_cc2: Predicted 63.4 1.7E+02 0.0037 29.4 18.4 64 64-137 207-270 (395)
137 PF03962 Mnd1: Mnd1 family; I 63.1 94 0.002 27.6 10.0 51 144-210 108-158 (188)
138 PF01920 Prefoldin_2: Prefoldi 63.0 66 0.0014 24.5 8.8 80 130-209 3-84 (106)
139 PF04849 HAP1_N: HAP1 N-termin 62.2 1.6E+02 0.0035 28.7 16.0 71 186-261 212-284 (306)
140 PF11336 DUF3138: Protein of u 61.3 17 0.00037 37.3 5.5 37 186-222 82-118 (514)
141 PF12325 TMF_TATA_bd: TATA ele 60.9 43 0.00094 28.2 7.1 67 182-256 12-78 (120)
142 PRK11637 AmiB activator; Provi 60.5 1.7E+02 0.0037 28.5 21.1 50 118-167 75-124 (428)
143 PRK11281 hypothetical protein; 60.5 3E+02 0.0064 31.2 17.6 23 74-96 85-107 (1113)
144 PRK10929 putative mechanosensi 60.1 3E+02 0.0066 31.2 17.4 20 82-101 108-127 (1109)
145 PF10168 Nup88: Nuclear pore c 58.0 2.7E+02 0.0058 29.9 13.8 143 85-243 556-705 (717)
146 KOG2751 Beclin-like protein [S 57.6 2.3E+02 0.005 29.1 14.2 132 72-215 138-275 (447)
147 PF13514 AAA_27: AAA domain 57.1 3.1E+02 0.0066 30.3 25.1 43 59-101 723-768 (1111)
148 PF02601 Exonuc_VII_L: Exonucl 57.0 1.6E+02 0.0036 27.2 13.7 129 67-220 148-278 (319)
149 TIGR03017 EpsF chain length de 56.8 1.9E+02 0.0041 27.8 19.4 25 72-96 174-198 (444)
150 PF06005 DUF904: Protein of un 56.6 41 0.00089 26.0 5.8 39 225-268 16-54 (72)
151 KOG1962 B-cell receptor-associ 56.5 48 0.001 30.8 7.1 58 184-246 155-212 (216)
152 PF12240 Angiomotin_C: Angiomo 56.4 63 0.0014 30.0 7.8 83 119-213 1-83 (205)
153 COG5278 Predicted periplasmic 56.3 1.6E+02 0.0035 26.9 12.3 64 173-236 93-162 (207)
154 PF13334 DUF4094: Domain of un 56.0 20 0.00042 29.0 4.1 40 52-91 56-95 (95)
155 COG1730 GIM5 Predicted prefold 56.0 1.3E+02 0.0028 26.2 9.4 101 64-165 18-134 (145)
156 PF15290 Syntaphilin: Golgi-lo 55.5 1.6E+02 0.0035 28.8 10.7 56 108-167 48-103 (305)
157 cd00939 MetRS_RNA MetRS_RNA bi 55.3 28 0.00061 25.1 4.3 41 152-199 2-42 (45)
158 TIGR02449 conserved hypothetic 55.2 40 0.00087 25.9 5.5 40 224-268 11-50 (65)
159 PF10481 CENP-F_N: Cenp-F N-te 55.0 1.4E+02 0.0031 29.2 10.2 69 192-265 44-114 (307)
160 PF09304 Cortex-I_coil: Cortex 54.6 1.3E+02 0.0028 25.3 10.5 80 144-262 14-93 (107)
161 cd00890 Prefoldin Prefoldin is 54.3 1.1E+02 0.0023 24.2 8.8 32 136-167 91-122 (129)
162 PF05483 SCP-1: Synaptonemal c 53.2 3.4E+02 0.0074 29.8 13.5 42 129-170 517-558 (786)
163 PF10186 Atg14: UV radiation r 52.8 1.7E+02 0.0036 26.0 18.5 42 129-170 60-101 (302)
164 PF06248 Zw10: Centromere/kine 52.7 90 0.0019 31.8 9.1 60 181-242 8-68 (593)
165 PF04977 DivIC: Septum formati 52.5 26 0.00056 25.5 4.0 35 185-219 22-56 (80)
166 KOG0976 Rho/Rac1-interacting s 52.1 3E+02 0.0065 31.1 13.0 109 131-269 98-206 (1265)
167 TIGR03545 conserved hypothetic 51.7 1.5E+02 0.0033 30.8 10.6 83 119-211 159-243 (555)
168 COG1579 Zn-ribbon protein, pos 51.5 2.1E+02 0.0046 26.9 12.3 77 130-210 94-172 (239)
169 COG4372 Uncharacterized protei 51.3 3E+02 0.0064 28.5 19.3 26 245-270 258-283 (499)
170 PRK05431 seryl-tRNA synthetase 51.3 1E+02 0.0023 30.5 9.1 68 145-212 27-98 (425)
171 KOG0995 Centromere-associated 51.2 3.3E+02 0.0072 29.0 13.8 136 116-271 233-371 (581)
172 TIGR02977 phageshock_pspA phag 50.7 1.9E+02 0.004 25.9 16.6 51 112-162 24-75 (219)
173 PF05600 DUF773: Protein of un 50.3 3E+02 0.0065 28.2 15.9 49 190-243 449-498 (507)
174 PF00261 Tropomyosin: Tropomyo 49.7 2E+02 0.0043 26.0 12.9 193 64-267 3-218 (237)
175 PRK15178 Vi polysaccharide exp 49.6 3E+02 0.0065 28.0 12.1 55 144-211 284-338 (434)
176 PF11932 DUF3450: Protein of u 48.9 2.1E+02 0.0045 26.0 16.4 97 133-243 64-168 (251)
177 cd09234 V_HD-PTP_like Protein- 48.7 2.5E+02 0.0053 26.8 20.2 188 61-269 78-271 (337)
178 PF10498 IFT57: Intra-flagella 48.4 2.8E+02 0.0061 27.3 14.1 134 67-208 218-356 (359)
179 PRK09343 prefoldin subunit bet 48.3 1.6E+02 0.0034 24.4 10.0 74 193-270 30-109 (121)
180 PRK10929 putative mechanosensi 48.2 4.7E+02 0.01 29.8 17.9 29 72-100 61-89 (1109)
181 PF03961 DUF342: Protein of un 48.0 1.5E+02 0.0032 29.2 9.5 34 180-213 326-360 (451)
182 cd00938 HisRS_RNA HisRS_RNA bi 47.8 47 0.001 24.0 4.5 40 150-196 2-41 (45)
183 PRK03947 prefoldin subunit alp 47.3 1.6E+02 0.0035 24.2 8.8 40 130-169 11-50 (140)
184 PF07246 Phlebovirus_NSM: Phle 47.2 1.5E+02 0.0032 28.5 9.0 85 131-218 160-247 (264)
185 KOG0239 Kinesin (KAR3 subfamil 46.9 3.9E+02 0.0084 28.6 12.9 38 59-96 97-134 (670)
186 PF01576 Myosin_tail_1: Myosin 46.7 6.5 0.00014 42.2 0.0 72 200-271 179-254 (859)
187 PF06818 Fez1: Fez1; InterPro 45.8 1.4E+02 0.003 27.5 8.4 59 147-205 88-156 (202)
188 KOG4302 Microtubule-associated 45.8 2.3E+02 0.0049 30.5 10.9 44 129-172 100-143 (660)
189 TIGR00414 serS seryl-tRNA synt 45.2 1.8E+02 0.0039 28.8 9.6 69 144-212 28-101 (418)
190 PF14197 Cep57_CLD_2: Centroso 45.1 79 0.0017 24.2 5.7 57 188-244 6-64 (69)
191 PF06476 DUF1090: Protein of u 44.9 88 0.0019 26.1 6.4 95 71-211 19-113 (115)
192 KOG1899 LAR transmembrane tyro 44.3 1E+02 0.0022 33.4 8.1 31 189-222 190-220 (861)
193 PF04420 CHD5: CHD5-like prote 44.1 75 0.0016 27.4 6.1 35 189-223 68-102 (161)
194 TIGR01730 RND_mfp RND family e 44.0 1E+02 0.0023 27.4 7.2 35 67-101 62-96 (322)
195 PF03962 Mnd1: Mnd1 family; I 43.6 2.4E+02 0.0051 25.1 9.6 63 137-213 67-129 (188)
196 TIGR02971 heterocyst_DevB ABC 43.4 2.6E+02 0.0057 25.6 14.8 35 67-101 95-129 (327)
197 PF12808 Mto2_bdg: Micro-tubul 43.3 94 0.002 23.0 5.6 46 120-166 3-49 (52)
198 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.9 1.9E+02 0.0042 23.9 10.1 31 62-92 59-89 (132)
199 COG1322 Predicted nuclease of 42.8 3.9E+02 0.0083 27.3 14.1 109 119-243 71-180 (448)
200 PF06008 Laminin_I: Laminin Do 42.7 2.6E+02 0.0057 25.4 14.9 115 124-247 126-247 (264)
201 TIGR01461 greB transcription e 42.5 1.4E+02 0.0031 25.7 7.6 36 180-215 38-73 (156)
202 PRK01156 chromosome segregatio 42.4 4.5E+02 0.0097 28.0 17.6 22 192-213 641-662 (895)
203 COG2433 Uncharacterized conser 42.4 3.5E+02 0.0075 29.2 11.5 60 142-211 439-505 (652)
204 KOG0946 ER-Golgi vesicle-tethe 42.3 5.4E+02 0.012 28.9 17.1 104 60-164 662-776 (970)
205 PF12761 End3: Actin cytoskele 42.3 2.4E+02 0.0053 25.9 9.3 80 188-268 97-182 (195)
206 TIGR02680 conserved hypothetic 42.2 5.9E+02 0.013 29.3 18.0 192 63-269 743-944 (1353)
207 COG4717 Uncharacterized conser 42.2 5E+02 0.011 29.3 12.9 55 104-165 174-228 (984)
208 PF09728 Taxilin: Myosin-like 42.0 3.2E+02 0.0069 26.2 10.7 109 121-235 174-308 (309)
209 PF10044 Ret_tiss: Retinal tis 41.9 18 0.00039 29.6 1.9 29 205-240 50-78 (95)
210 PF14643 DUF4455: Domain of un 41.7 3.8E+02 0.0082 26.9 14.8 59 153-211 282-340 (473)
211 PF10562 CaM_bdg_C0: Calmoduli 41.5 31 0.00068 23.0 2.6 18 82-99 11-28 (29)
212 cd00584 Prefoldin_alpha Prefol 40.9 71 0.0015 25.8 5.2 96 71-166 18-121 (129)
213 PRK00153 hypothetical protein; 40.7 26 0.00057 28.1 2.6 32 189-220 5-36 (104)
214 PLN02678 seryl-tRNA synthetase 40.6 1.5E+02 0.0033 30.0 8.4 68 145-212 32-103 (448)
215 KOG4603 TBP-1 interacting prot 40.5 3E+02 0.0065 25.4 10.5 68 177-246 113-185 (201)
216 TIGR00219 mreC rod shape-deter 40.2 49 0.0011 31.0 4.7 12 232-243 96-107 (283)
217 TIGR02231 conserved hypothetic 39.9 1.5E+02 0.0033 29.6 8.4 82 183-269 67-168 (525)
218 PF12718 Tropomyosin_1: Tropom 39.9 2.4E+02 0.0052 24.1 15.8 87 123-212 16-105 (143)
219 COG1842 PspA Phage shock prote 39.7 3.1E+02 0.0067 25.3 15.8 150 107-259 21-204 (225)
220 PRK00286 xseA exodeoxyribonucl 39.7 3.7E+02 0.008 26.2 13.9 73 142-220 323-396 (438)
221 KOG4643 Uncharacterized coiled 39.6 6.4E+02 0.014 29.0 16.6 118 76-215 488-607 (1195)
222 PF10234 Cluap1: Clusterin-ass 39.5 3.5E+02 0.0076 25.9 10.6 72 115-199 166-237 (267)
223 PF04912 Dynamitin: Dynamitin 38.8 96 0.0021 30.0 6.6 26 112-137 88-113 (388)
224 TIGR01000 bacteriocin_acc bact 38.5 3.9E+02 0.0086 26.2 21.3 26 188-213 237-262 (457)
225 PF14193 DUF4315: Domain of un 38.3 1.1E+02 0.0025 24.3 5.8 48 189-250 3-50 (83)
226 PRK03947 prefoldin subunit alp 38.3 2.2E+02 0.0049 23.3 9.6 33 134-166 96-128 (140)
227 PF11559 ADIP: Afadin- and alp 37.9 2.4E+02 0.0051 23.5 11.7 11 186-196 139-149 (151)
228 PF03961 DUF342: Protein of un 37.7 1.4E+02 0.0029 29.5 7.5 23 146-168 341-363 (451)
229 KOG4809 Rab6 GTPase-interactin 37.5 5.5E+02 0.012 27.6 13.2 55 151-209 389-443 (654)
230 PF04420 CHD5: CHD5-like prote 37.5 1.5E+02 0.0032 25.6 6.9 57 190-248 36-94 (161)
231 PF04156 IncA: IncA protein; 37.1 2.6E+02 0.0057 23.8 11.9 17 227-243 151-167 (191)
232 PF10186 Atg14: UV radiation r 37.1 3E+02 0.0065 24.4 15.2 49 120-168 58-106 (302)
233 PF12004 DUF3498: Domain of un 36.9 11 0.00025 38.5 0.0 81 74-160 374-454 (495)
234 PRK11020 hypothetical protein; 36.4 1.1E+02 0.0023 26.3 5.6 73 117-191 4-76 (118)
235 PF10174 Cast: RIM-binding pro 36.2 6.1E+02 0.013 27.8 19.7 144 72-219 70-223 (775)
236 PRK10246 exonuclease subunit S 36.1 6.4E+02 0.014 28.0 20.7 21 188-208 778-798 (1047)
237 PF08657 DASH_Spc34: DASH comp 35.8 2.1E+02 0.0045 27.0 8.1 79 129-207 177-259 (259)
238 PF08581 Tup_N: Tup N-terminal 35.5 2.2E+02 0.0048 22.4 8.8 69 122-199 8-76 (79)
239 PF04899 MbeD_MobD: MbeD/MobD 35.4 2.1E+02 0.0046 22.2 7.2 44 122-165 25-68 (70)
240 PRK10361 DNA recombination pro 35.0 5.3E+02 0.011 26.7 16.5 50 186-243 139-188 (475)
241 PRK12704 phosphodiesterase; Pr 34.7 5.3E+02 0.011 26.6 13.4 45 124-168 92-139 (520)
242 PF15259 GTSE1_N: G-2 and S-ph 34.7 26 0.00057 30.7 1.9 37 6-52 4-41 (141)
243 KOG0964 Structural maintenance 34.5 7.7E+02 0.017 28.4 19.5 95 63-160 266-377 (1200)
244 KOG0612 Rho-associated, coiled 34.5 8.1E+02 0.018 28.7 17.8 49 120-168 474-523 (1317)
245 KOG3156 Uncharacterized membra 34.4 1.1E+02 0.0024 28.7 5.9 91 66-168 105-196 (220)
246 PF01544 CorA: CorA-like Mg2+ 34.3 2.2E+02 0.0047 25.0 7.6 95 117-211 121-216 (292)
247 smart00338 BRLZ basic region l 33.7 94 0.002 22.5 4.4 34 224-262 30-63 (65)
248 PF12018 DUF3508: Domain of un 33.3 4.1E+02 0.0089 24.9 11.2 60 75-134 8-68 (281)
249 PF02050 FliJ: Flagellar FliJ 33.2 2.1E+02 0.0044 21.4 7.6 45 57-101 40-88 (123)
250 PRK13922 rod shape-determining 33.2 74 0.0016 29.0 4.6 12 257-268 97-108 (276)
251 PF10796 Anti-adapt_IraP: Sigm 32.9 1.4E+02 0.003 24.1 5.6 51 144-198 8-58 (87)
252 PF08385 DHC_N1: Dynein heavy 32.8 4.9E+02 0.011 25.6 11.6 24 217-240 424-447 (579)
253 PF04111 APG6: Autophagy prote 32.6 4.5E+02 0.0098 25.1 10.2 44 125-168 43-86 (314)
254 PF12072 DUF3552: Domain of un 32.2 3.5E+02 0.0076 23.9 8.6 25 123-147 87-111 (201)
255 KOG0250 DNA repair protein RAD 32.1 8.2E+02 0.018 28.0 18.9 72 185-268 392-465 (1074)
256 PF12795 MscS_porin: Mechanose 32.0 3.8E+02 0.0082 24.1 14.4 35 134-168 33-67 (240)
257 KOG0250 DNA repair protein RAD 31.9 8.3E+02 0.018 28.0 17.3 31 70-100 690-720 (1074)
258 PF06476 DUF1090: Protein of u 31.9 3E+02 0.0066 22.9 8.7 50 188-240 64-113 (115)
259 KOG0972 Huntingtin interacting 31.8 4.1E+02 0.0088 26.6 9.5 64 133-197 260-325 (384)
260 KOG0018 Structural maintenance 31.8 4.6E+02 0.01 30.1 10.9 106 107-213 641-751 (1141)
261 PF06005 DUF904: Protein of un 31.6 2.4E+02 0.0053 21.7 7.2 27 140-166 12-38 (72)
262 PF09755 DUF2046: Uncharacteri 31.5 5.1E+02 0.011 25.5 19.9 73 174-246 159-248 (310)
263 smart00503 SynN Syntaxin N-ter 31.2 2.4E+02 0.0053 21.6 9.6 21 187-207 8-28 (117)
264 PF15120 DUF4561: Domain of un 31.2 75 0.0016 28.7 4.2 51 181-240 61-111 (171)
265 KOG4674 Uncharacterized conser 30.9 1E+03 0.023 28.8 19.5 157 69-243 654-821 (1822)
266 PF05377 FlaC_arch: Flagella a 30.8 37 0.0008 25.5 1.8 25 246-270 7-31 (55)
267 COG1579 Zn-ribbon protein, pos 30.5 4.7E+02 0.01 24.7 14.3 42 187-240 89-130 (239)
268 KOG4466 Component of histone d 30.1 5.4E+02 0.012 25.2 10.0 89 138-237 34-133 (291)
269 PF05667 DUF812: Protein of un 29.8 6.9E+02 0.015 26.4 16.1 68 186-253 453-521 (594)
270 PRK09578 periplasmic multidrug 29.7 3.9E+02 0.0084 25.4 8.9 35 67-101 99-133 (385)
271 TIGR00513 accA acetyl-CoA carb 29.7 1.1E+02 0.0024 29.8 5.3 54 149-214 6-59 (316)
272 CHL00198 accA acetyl-CoA carbo 29.3 1.1E+02 0.0024 29.9 5.3 53 150-214 10-62 (322)
273 PRK09413 IS2 repressor TnpA; R 29.2 2.5E+02 0.0055 22.7 6.7 30 75-104 29-58 (121)
274 PF00458 WHEP-TRS: WHEP-TRS do 29.1 1.8E+02 0.004 21.5 5.3 39 152-197 2-40 (56)
275 PF15200 KRTDAP: Keratinocyte 29.1 24 0.00052 28.1 0.6 15 91-105 28-42 (77)
276 PRK06975 bifunctional uroporph 29.0 2.1E+02 0.0046 30.0 7.6 111 66-179 343-468 (656)
277 KOG4403 Cell surface glycoprot 29.0 7E+02 0.015 26.2 14.2 111 150-268 256-376 (575)
278 PF07544 Med9: RNA polymerase 28.8 46 0.001 25.9 2.2 44 226-269 37-82 (83)
279 COG4026 Uncharacterized protei 28.8 5.4E+02 0.012 24.9 12.0 108 81-209 78-206 (290)
280 COG0216 PrfA Protein chain rel 28.4 2.7E+02 0.0059 28.0 7.8 67 152-222 42-111 (363)
281 KOG0837 Transcriptional activa 28.3 90 0.002 30.2 4.4 46 220-270 220-265 (279)
282 COG5481 Uncharacterized conser 28.2 2.5E+02 0.0055 21.8 6.0 51 146-210 11-61 (67)
283 PRK00226 greA transcription el 28.1 2.5E+02 0.0055 23.8 6.7 12 216-227 121-132 (157)
284 PLN02320 seryl-tRNA synthetase 27.9 3.5E+02 0.0075 28.1 8.8 67 145-211 92-161 (502)
285 COG1315 Uncharacterized conser 27.7 2.4E+02 0.0051 29.7 7.5 68 181-248 404-493 (543)
286 PF05769 DUF837: Protein of un 27.7 4.4E+02 0.0096 23.5 13.4 93 149-244 73-177 (181)
287 PF13600 DUF4140: N-terminal d 27.5 1.1E+02 0.0023 23.9 4.1 36 61-96 69-104 (104)
288 PF06705 SF-assemblin: SF-asse 27.4 4.7E+02 0.01 23.7 14.6 145 59-210 67-227 (247)
289 PF08580 KAR9: Yeast cortical 27.2 8E+02 0.017 26.3 16.9 196 61-258 35-280 (683)
290 PF10168 Nup88: Nuclear pore c 27.0 8.2E+02 0.018 26.4 16.9 107 135-261 561-668 (717)
291 PF10359 Fmp27_WPPW: RNA pol I 27.0 2.4E+02 0.0052 28.4 7.3 81 99-213 145-226 (475)
292 KOG0837 Transcriptional activa 27.0 2.7E+02 0.0058 27.1 7.3 101 83-206 167-267 (279)
293 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.0 3.6E+02 0.0079 22.3 13.6 34 178-211 50-83 (132)
294 PF05622 HOOK: HOOK protein; 27.0 47 0.001 34.7 2.5 40 224-265 288-327 (713)
295 PF07111 HCR: Alpha helical co 26.8 8.8E+02 0.019 26.7 14.2 119 67-213 526-665 (739)
296 COG3883 Uncharacterized protei 26.8 1.6E+02 0.0034 28.3 5.7 37 225-266 64-100 (265)
297 PHA03385 IX capsid protein IX, 26.8 92 0.002 27.2 3.8 30 142-171 103-132 (135)
298 PF13371 TPR_9: Tetratricopept 26.7 1.5E+02 0.0033 20.4 4.4 49 180-229 23-72 (73)
299 PF07160 DUF1395: Protein of u 26.7 3.1E+02 0.0067 25.5 7.5 64 174-239 9-72 (243)
300 KOG1029 Endocytic adaptor prot 26.7 3.6E+02 0.0078 30.3 8.8 128 129-271 434-574 (1118)
301 PF05483 SCP-1: Synaptonemal c 26.5 9E+02 0.02 26.7 17.7 46 223-268 488-535 (786)
302 PRK11546 zraP zinc resistance 26.5 2.7E+02 0.0058 24.4 6.6 53 144-202 59-111 (143)
303 PF14182 YgaB: YgaB-like prote 26.3 1.7E+02 0.0037 23.5 5.0 42 226-270 23-64 (79)
304 PF11802 CENP-K: Centromere-as 26.3 5.6E+02 0.012 24.8 9.2 81 190-270 19-120 (268)
305 PF01920 Prefoldin_2: Prefoldi 26.2 2.9E+02 0.0063 20.9 7.3 30 65-94 8-37 (106)
306 PF07321 YscO: Type III secret 26.2 4.4E+02 0.0096 23.0 8.6 87 78-164 27-120 (152)
307 COG3206 GumC Uncharacterized p 26.2 6.3E+02 0.014 24.8 18.8 30 67-96 193-222 (458)
308 PF09789 DUF2353: Uncharacteri 26.2 6.4E+02 0.014 24.8 17.5 122 134-266 74-206 (319)
309 KOG0804 Cytoplasmic Zn-finger 26.2 7.7E+02 0.017 25.8 11.6 87 131-219 367-453 (493)
310 smart00502 BBC B-Box C-termina 26.2 2.9E+02 0.0064 20.9 13.0 53 117-169 49-102 (127)
311 PF05791 Bacillus_HBL: Bacillu 26.0 4.2E+02 0.009 23.3 7.9 94 57-171 47-142 (184)
312 PF08397 IMD: IRSp53/MIM homol 25.9 4.7E+02 0.01 23.2 10.0 51 220-270 55-108 (219)
313 TIGR02338 gimC_beta prefoldin, 25.3 3.6E+02 0.0077 21.6 10.8 78 132-210 10-90 (110)
314 KOG3958 Putative dynamitin [Cy 25.3 3.8E+02 0.0081 26.8 8.0 66 152-226 100-165 (371)
315 PRK00106 hypothetical protein; 25.3 8E+02 0.017 25.7 12.2 22 239-260 285-306 (535)
316 KOG0993 Rab5 GTPase effector R 25.2 3.3E+02 0.0071 28.4 7.9 87 75-164 91-187 (542)
317 TIGR03752 conj_TIGR03752 integ 25.2 5.8E+02 0.013 26.5 9.7 79 76-168 59-138 (472)
318 KOG0978 E3 ubiquitin ligase in 25.0 9.3E+02 0.02 26.3 16.4 37 66-102 269-305 (698)
319 PF09832 DUF2059: Uncharacteri 25.0 1.2E+02 0.0026 21.6 3.7 29 218-246 30-59 (64)
320 KOG0979 Structural maintenance 24.6 1.1E+03 0.024 27.1 18.1 152 75-254 247-398 (1072)
321 cd09238 V_Alix_like_1 Protein- 24.4 6.3E+02 0.014 24.2 14.3 51 56-109 124-180 (339)
322 PF14257 DUF4349: Domain of un 24.2 3.1E+02 0.0067 24.8 7.0 56 117-172 138-195 (262)
323 COG0172 SerS Seryl-tRNA synthe 24.1 5.2E+02 0.011 26.4 9.1 71 141-211 24-99 (429)
324 PF07160 DUF1395: Protein of u 24.1 4.3E+02 0.0093 24.5 7.9 60 64-137 2-69 (243)
325 PF14988 DUF4515: Domain of un 24.0 5.5E+02 0.012 23.3 16.3 178 66-266 8-197 (206)
326 PRK11448 hsdR type I restricti 23.6 1E+03 0.023 27.0 12.0 34 63-96 150-183 (1123)
327 PRK05724 acetyl-CoA carboxylas 23.5 2.5E+02 0.0055 27.4 6.6 78 148-240 5-87 (319)
328 PLN03230 acetyl-coenzyme A car 23.5 1.5E+02 0.0032 30.3 5.1 63 151-225 78-145 (431)
329 PF06698 DUF1192: Protein of u 23.3 99 0.0021 23.4 3.0 38 59-97 12-49 (59)
330 KOG0018 Structural maintenance 23.3 1.2E+03 0.026 27.0 12.4 83 80-164 205-287 (1141)
331 PF03127 GAT: GAT domain; Int 23.1 3.7E+02 0.008 21.0 9.6 73 189-269 6-84 (100)
332 KOG1937 Uncharacterized conser 23.0 9E+02 0.019 25.4 15.6 105 148-263 257-362 (521)
333 PF15294 Leu_zip: Leucine zipp 23.0 7E+02 0.015 24.1 12.2 77 87-163 95-177 (278)
334 KOG2857 Predicted MYND Zn-fing 22.9 2E+02 0.0043 25.7 5.2 40 170-209 84-123 (157)
335 PRK15030 multidrug efflux syst 22.4 3.4E+02 0.0073 26.1 7.2 36 67-102 101-136 (397)
336 PF03993 DUF349: Domain of Unk 22.3 3.1E+02 0.0067 19.8 6.9 54 186-242 19-72 (77)
337 PRK14161 heat shock protein Gr 22.3 4.8E+02 0.01 23.3 7.6 48 143-210 16-63 (178)
338 PF15120 DUF4561: Domain of un 22.3 49 0.0011 29.8 1.4 61 60-120 65-125 (171)
339 PF05308 Mito_fiss_reg: Mitoch 22.2 1.1E+02 0.0023 28.8 3.7 26 144-169 120-145 (253)
340 PF05529 Bap31: B-cell recepto 22.1 4.5E+02 0.0097 22.7 7.3 41 225-270 152-192 (192)
341 KOG4673 Transcription factor T 22.1 1.1E+03 0.024 26.3 17.2 79 187-267 474-565 (961)
342 PF10267 Tmemb_cc2: Predicted 22.1 8.3E+02 0.018 24.7 15.7 46 60-105 210-259 (395)
343 PRK15178 Vi polysaccharide exp 22.0 8.6E+02 0.019 24.9 18.3 123 107-243 211-337 (434)
344 PF08651 DASH_Duo1: DASH compl 21.9 1.8E+02 0.004 22.7 4.3 38 62-99 15-52 (78)
345 PF14073 Cep57_CLD: Centrosome 21.9 6.1E+02 0.013 23.1 11.6 81 172-256 67-151 (178)
346 PF05008 V-SNARE: Vesicle tran 21.8 3.3E+02 0.0073 20.0 7.3 56 184-243 22-77 (79)
347 PRK10722 hypothetical protein; 21.5 4.9E+02 0.011 24.9 7.8 34 72-105 82-115 (247)
348 COG1570 XseA Exonuclease VII, 21.5 9E+02 0.02 24.9 14.9 127 66-220 265-392 (440)
349 PF02996 Prefoldin: Prefoldin 21.5 4E+02 0.0087 20.8 7.5 40 71-110 8-48 (120)
350 TIGR00255 conserved hypothetic 21.5 7.2E+02 0.016 23.8 13.3 71 185-270 218-288 (291)
351 PF05700 BCAS2: Breast carcino 21.4 5.7E+02 0.012 23.0 8.0 42 223-269 178-219 (221)
352 PRK14624 hypothetical protein; 21.0 1.1E+02 0.0023 25.8 3.0 37 181-219 2-38 (115)
353 PF02662 FlpD: Methyl-viologen 20.9 2.3E+02 0.0049 23.5 5.0 43 198-240 74-124 (124)
354 PF10234 Cluap1: Clusterin-ass 20.9 4.9E+02 0.011 24.9 7.8 74 141-239 164-237 (267)
355 PF04102 SlyX: SlyX; InterPro 20.4 1E+02 0.0022 23.2 2.6 24 245-268 3-26 (69)
356 PRK11546 zraP zinc resistance 20.3 5.9E+02 0.013 22.3 9.9 51 156-206 57-108 (143)
357 PF11221 Med21: Subunit 21 of 20.0 5.4E+02 0.012 21.7 12.1 52 187-243 69-120 (144)
No 1
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=100.00 E-value=3.4e-85 Score=599.68 Aligned_cols=256 Identities=45% Similarity=0.620 Sum_probs=251.6
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccccchhhhcCCCchhHHHHhhHHHHHhchhhhhhhHHHHHHH
Q 024197 9 DDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAA 88 (271)
Q Consensus 9 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a 88 (271)
-|+|||||-+..++.+.||+.|+|+|+.||+||+|++-- .||||-|||||++|-++-+||+.+++||..+..|
T Consensus 6 ~~~D~~~~~~~a~~t~~~~n~~s~~dl~d~e~d~~~s~~-------~A~~~~tGm~~~~~~~~p~pk~~~~seq~~~~~a 78 (330)
T KOG2991|consen 6 QDDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTT-------VAPGVRTGMILSMTNEEPLPKKVRLSEQDFKVMA 78 (330)
T ss_pred cccccCCccchhhcccCCcchhhccCccccccccccCCC-------CCCCCccchhhhhccCCCCchhhhhHHHHHHHHH
Confidence 388999999999999999999999999999999999865 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 89 KSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 89 ~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+.+|++|++.||||+|||++++++|+++++||+.||+||++|++|+++++|||++||||||+||||+|||+++|++||++
T Consensus 79 ~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~q 158 (330)
T KOG2991|consen 79 RDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQ 158 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccc
Q 024197 169 LKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGET 248 (271)
Q Consensus 169 ~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegri 248 (271)
++|++++||++|+|||||++|.|||.+|+++++|++++|++|+||+|||||++||+||||||+|++||+|||+++++|||
T Consensus 159 q~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gri 238 (330)
T KOG2991|consen 159 QQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRI 238 (330)
T ss_pred hCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcC
Q 024197 249 HQLSVKLALQKSLNAELKSQFEG 271 (271)
Q Consensus 249 a~LE~eLAlqK~~~eELrk~~ee 271 (271)
|+|+++||.||++++|||++++|
T Consensus 239 a~Le~eLAmQKs~seElkssq~e 261 (330)
T KOG2991|consen 239 AELEIELAMQKSQSEELKSSQEE 261 (330)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHH
Confidence 99999999999999999999875
No 2
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.097 Score=54.33 Aligned_cols=181 Identities=17% Similarity=0.182 Sum_probs=115.2
Q ss_pred HhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (271)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl 144 (271)
|+|=+-=...+-.++.++++++.++.||++-+.+|-.-....--.+.+..- -|++ =|+++.-||.-|
T Consensus 39 L~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e----------~Ees---LLqESaakE~~y 105 (772)
T KOG0999|consen 39 LELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEE----------REES---LLQESAAKEEYY 105 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh----------hHHH---HHHHHHHhHHHH
Confidence 444444455667788999999999999999998885532222222222211 1332 267999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHH--HHHHHHHHHHHHHHHHHHhhhhcccCCCchhH
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFR--RLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~--rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G 222 (271)
+.+|..+|-|+-.++..+...+.-. -...+--+-+.+.--+++.. |||.+|.+++-+-..+-.+++.. --....=
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~-erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSEL--EEENIsL 182 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEEN-ERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSEL--EEENISL 182 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchH
Confidence 9999999999988888777665442 22233334455544445544 56777877765554444444433 1122222
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 024197 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 223 KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELr 266 (271)
++.++-.|.=|-|-|-|. ..|.+||-++.+.+++++|.-
T Consensus 183 QKqVs~LR~sQVEyEglk-----heikRleEe~elln~q~ee~~ 221 (772)
T KOG0999|consen 183 QKQVSNLRQSQVEYEGLK-----HEIKRLEEETELLNSQLEEAI 221 (772)
T ss_pred HHHHHHHhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666665 446788889998888888754
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.34 E-value=0.13 Score=53.62 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHh
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSS 98 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~ 98 (271)
|.++...++.+...+..++.++..+..++......
T Consensus 676 l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~ 710 (1164)
T TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555555555433
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=96.04 E-value=1.3 Score=46.01 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=27.6
Q ss_pred HHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024197 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKA 167 (271)
Q Consensus 119 ~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~ 167 (271)
.+..+...-..+.+++.+...+-.-+...+...+..+.++...+..+..
T Consensus 252 ~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556566555555666666666666666655555533
No 5
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.99 E-value=1.1 Score=40.82 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=37.3
Q ss_pred hhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 024197 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE 102 (271)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e 102 (271)
-..-|=.||..|..+....+.++.++..++.++..|+.-+..+
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999998777766
No 6
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.84 E-value=0.53 Score=41.35 Aligned_cols=174 Identities=23% Similarity=0.369 Sum_probs=109.1
Q ss_pred HHHhhHHHHHhchhhhhh-------hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197 63 MILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~-------~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~ 135 (271)
+|-.+.+.|...+..+++ ++.++..+..++.+|....+-- +.+|...--+........+...=+.+++++.
T Consensus 31 ~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A--l~~g~edLAr~al~~k~~~e~~~~~l~~~~~ 108 (221)
T PF04012_consen 31 AIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA--LAAGREDLAREALQRKADLEEQAERLEQQLD 108 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666655 5667888899999999655433 4455333333344444455555567788999
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHH--Hhh----hChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024197 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR--RLL----LDPAIHEEFRRLKNLVEEKDKKVKELEEN 209 (271)
Q Consensus 136 e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR--~~L----lDPAVNlef~rLr~eLee~~~kle~aq~E 209 (271)
.......-|-..|...+..|.++++....|+.......++.. .++ ++ ...--|.||+..+...+.+.+-. .+
T Consensus 109 ~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~-~a~~~~er~e~ki~~~ea~a~a~-~e 186 (221)
T PF04012_consen 109 QAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVS-SAMDSFERMEEKIEEMEARAEAS-AE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 999999999999999999999999988888776543322221 111 22 23345677777777776665433 33
Q ss_pred hhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHH
Q 024197 210 IAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKS 260 (271)
Q Consensus 210 LsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~ 260 (271)
|.. ++.+ +..+.+++|..-.. . +.+|+.+|.
T Consensus 187 l~~---~~~~------------~e~~l~~~~~~~~~----~-~~~La~LK~ 217 (221)
T PF04012_consen 187 LAD---SDQD------------LEAELEELERDSSV----S-EDELAALKA 217 (221)
T ss_pred hcc---Cccc------------HHHHHHHhcCCCcc----h-HHHHHHHHh
Confidence 333 3332 67777777754322 2 666666654
No 7
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.23 E-value=0.027 Score=49.24 Aligned_cols=120 Identities=21% Similarity=0.327 Sum_probs=44.4
Q ss_pred CCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHH
Q 024197 110 SPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEF 189 (271)
Q Consensus 110 ~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef 189 (271)
++.+......+..+...=.++++.|.++.|.=.-+.-+|.....+++++...+......... ++.-. -.....+
T Consensus 59 ~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~----l~~~~--~~L~~~~ 132 (194)
T PF08614_consen 59 SESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAE----LEAEL--AQLEEKI 132 (194)
T ss_dssp -------------------------------------------------------HHHHHHH----HHHHH--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHH----HHHHH--HHHHHHH
Confidence 33333344455555555556666676666666556666665555555555544443222110 00000 0123456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 190 ~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
..|..+|.+..+-++.+++|+.+.+..-. .|=.|++.|+.||.+|=
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~-----~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLN-----MLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999876443 37889999999999984
No 8
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.21 E-value=0.52 Score=51.63 Aligned_cols=147 Identities=23% Similarity=0.359 Sum_probs=85.9
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcc-cCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHh-HHHH
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE-LFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKK-KEAA 143 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e-~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~kr-RE~v 143 (271)
.||+.++.+...|.+++...+++...+.+-+..++.- .-+ .-....-.-..+.++.|+.-...++.++.+.+. |=..
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREI-TQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888877777777766665555554433222220 000 000012223345777788877888877755444 3356
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhh------hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL------LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~L------lDPAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
+...++..+.++..+..++..+...+......++.-+ +.-.....+..++.++.+.+.+.+.-..+|..|
T Consensus 683 ~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~ 758 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQ 758 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888776654443333222 445555556666666666555555555555444
No 9
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=94.88 E-value=3.5 Score=38.82 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=101.6
Q ss_pred HHHHHHHHhhhcccCCC------CCCCCChhhhHHHHHhhHh-hHHHHHHHHHH--HHhHHHHHHHHHhhHHHHHHHHHH
Q 024197 90 SEIQKWHSSFQNELFIP------PGTSPEPRLVINYLQTLKS-SEEMLKEQLEK--AKKKEAAFIVTFAKREQEIAELKS 160 (271)
Q Consensus 90 ~ei~kW~~~fq~e~~i~------a~~~~~~~l~~~~l~~Lk~-sE~~LkeQl~e--~krRE~vlv~rLAtKEQEiqEl~s 160 (271)
.-+..|++.+.=+..-. .-.+.+|.....-+..+-. +|.-+.+ +.. .+..-..+-.++...++++.+...
T Consensus 113 ~~~~~~~~~v~v~~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~-~~~~~~~~a~~fl~~ql~~~~~~l~~ae~ 191 (362)
T TIGR01010 113 AFYRYYKKRLSVDVDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINR-LNERARKDTIAFAENEVKEAEQRLNATKA 191 (362)
T ss_pred HHHHHHHhceEEeecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677885543321110 2356788777666666644 4443333 222 222334677888888888888888
Q ss_pred HHHHHHHhcCCchHHHHHhhhChhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHH
Q 024197 161 AVRDLKAQLKPPLMQARRLLLDPAI-----HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEE 235 (271)
Q Consensus 161 qi~dlK~~~~ps~~qlR~~LlDPAV-----Nlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeE 235 (271)
.+.++|..+. ++||.. .-.+..|+.++.+.+.++..+.. .|+|+++.=+.|-++...|+..
T Consensus 192 ~l~~fr~~~~---------~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~-----~~~~~~P~v~~l~~~i~~l~~~ 257 (362)
T TIGR01010 192 ELLKYQIKNK---------VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS-----ITPEQNPQVPSLQARIKSLRKQ 257 (362)
T ss_pred HHHHHHHhCC---------CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCCCCchHHHHHHHHHHHHH
Confidence 8999988765 456643 34567777777777777665543 5788888888888888888877
Q ss_pred HHHHhhhhhcc----------cchhhhHHHHHHHHHHHHHHhhh
Q 024197 236 NDEIGRQNEEG----------ETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 236 NEELGr~lseg----------ria~LE~eLAlqK~~~eELrk~~ 269 (271)
..+.-+.+..+ ....|+.+....+..-+-+-..+
T Consensus 258 i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~ 301 (362)
T TIGR01010 258 IDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSL 301 (362)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76544433222 23456666666555555444443
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.81 E-value=4.3 Score=42.28 Aligned_cols=33 Identities=9% Similarity=0.275 Sum_probs=16.6
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHH
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWH 96 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~ 96 (271)
|..|...+......+..++.++..+..++....
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~ 704 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELR 704 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555444444
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.72 E-value=2.6 Score=49.07 Aligned_cols=182 Identities=20% Similarity=0.316 Sum_probs=96.2
Q ss_pred HhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (271)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl 144 (271)
..||+.++.--+.++.+.-.+-.|.+++.+|+.-|+.+ +...+..+.+.-.++.+.++++..+.-.+
T Consensus 1332 ~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~-------------~~~~~eelee~kk~l~~~lq~~qe~~e~~ 1398 (1930)
T KOG0161|consen 1332 DLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEE-------------VLQRLEELEELKKKLQQRLQELEEQIEAA 1398 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45788888888888899999999999999999777665 22223334444445555566666666555
Q ss_pred HHHHhhH-------HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---
Q 024197 145 IVTFAKR-------EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS--- 214 (271)
Q Consensus 145 v~rLAtK-------EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk--- 214 (271)
..+.+++ .||+-++...+...++....-.-+.+ =.|-.++ ..|...+....+++.++.++....
T Consensus 1399 ~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k--~f~k~l~----e~k~~~e~l~~Eld~aq~e~r~~~tel 1472 (1930)
T KOG0161|consen 1399 NAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQK--RFEKLLA----EWKKKLEKLQAELDAAQRELRQLSTEL 1472 (1930)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555 44444444444333322111000000 0111111 112222222222222222221110
Q ss_pred ----cCCC---------chhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 215 ----FTAN---------SKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 215 ----FTpd---------S~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
-.-+ -...+.|-+.|..|..-+.|+|+ ++|.|+..+...-....||+.+++
T Consensus 1473 ~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k-----~v~elek~~r~le~e~~elQ~aLe 1536 (1930)
T KOG0161|consen 1473 QKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGK-----RVHELEKEKRRLEQEKEELQAALE 1536 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 12345666666666666666664 458888888887777778777664
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.54 E-value=1.1 Score=46.98 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=15.6
Q ss_pred HHHHHhchhhhhhhHHHHHHHHHHHHHHH
Q 024197 68 RESLQNCKDTLATCQLELEAAKSEIQKWH 96 (271)
Q Consensus 68 r~~l~~~~~~~~~~~~~l~~a~~ei~kW~ 96 (271)
+..+.+....+..++.++.....++....
T Consensus 673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~ 701 (1164)
T TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIE 701 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444
No 13
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.39 E-value=5.4 Score=38.86 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHh
Q 024197 70 SLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFA 149 (271)
Q Consensus 70 ~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLA 149 (271)
+.+--...+...+.+|+.|..++..++. +|.-+.|.+ ...+.+.+..+...-..++.++...+.+=..+...++
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~--~~~~~~~~~----~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQ--ENGGILPDQ----EGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcccCccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455778889999999999988873 232223222 2345566666666666666666666665555554433
Q ss_pred ---------------hHHHHHHHHHHHHHHHHH
Q 024197 150 ---------------KREQEIAELKSAVRDLKA 167 (271)
Q Consensus 150 ---------------tKEQEiqEl~sqi~dlK~ 167 (271)
....++.++..++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 236 GEEPVLLAGSSVANSELDGRIEALEKQLDALRL 268 (498)
T ss_pred cCCCCcCcccccCCCchHHHHHHHHHHHHHHHH
Confidence 334445555555555543
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.25 E-value=1.7 Score=47.42 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 024197 183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFT 216 (271)
Q Consensus 183 PAVNlef~rLr~eLee~~~kle~aq~ELsAwkFT 216 (271)
+.+...+..+..++...+.++..+..++..|...
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1163)
T COG1196 789 QALQEELEELEEELEEAERRLDALERELESLEQR 822 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666443
No 15
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.85 E-value=2 Score=39.17 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=42.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCch-----------HHHHHhhhC-----hhHHHHHHHHHH
Q 024197 131 KEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL-----------MQARRLLLD-----PAIHEEFRRLKN 194 (271)
Q Consensus 131 keQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~-----------~qlR~~LlD-----PAVNlef~rLr~ 194 (271)
|++++...-|=..|+-+.-.+|++...+..+|..|+....+.+ ..+|..+-+ .-+-+.+..|+.
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 4567777777788888888888888888888888877743332 233333222 223344555555
Q ss_pred HHHHHHHHHHHH
Q 024197 195 LVEEKDKKVKEL 206 (271)
Q Consensus 195 eLee~~~kle~a 206 (271)
++..++.+++..
T Consensus 83 e~~~~r~k~e~e 94 (312)
T PF00038_consen 83 ELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 16
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.75 E-value=6.6 Score=37.53 Aligned_cols=120 Identities=16% Similarity=0.221 Sum_probs=70.2
Q ss_pred CCCCChhhhHHHHHhhHh--hHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC---ch------HH-
Q 024197 108 GTSPEPRLVINYLQTLKS--SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKP---PL------MQ- 175 (271)
Q Consensus 108 ~~~~~~~l~~~~l~~Lk~--sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~p---s~------~q- 175 (271)
-++++|.....-+..+-+ .+..+........+--..+-.+|...++++.+....+..+|..+.- +. .+
T Consensus 138 ~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l 217 (444)
T TIGR03017 138 FSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARL 217 (444)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHH
Confidence 456788776665554443 2223333344455556677788888888888888888888776632 10 00
Q ss_pred -----------------------------HHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHH
Q 024197 176 -----------------------------ARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALM 226 (271)
Q Consensus 176 -----------------------------lR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLm 226 (271)
+-.+..+| .|..|+.++.+.+.++..+. -+|+|+++.=+.|=
T Consensus 218 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~l~~~l~~le~~l~~l~-----~~y~~~hP~v~~l~ 288 (444)
T TIGR03017 218 NELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANP----IIQNLKTDIARAESKLAELS-----QRLGPNHPQYKRAQ 288 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcCh----HHHHHHHHHHHHHHHHHHHH-----HHhCCCCcHHHHHH
Confidence 00111222 23455555555555554442 35899998877777
Q ss_pred HHHHhHHHHH
Q 024197 227 AKCKTLQEEN 236 (271)
Q Consensus 227 aKCR~LqeEN 236 (271)
+++..|....
T Consensus 289 ~~i~~l~~~l 298 (444)
T TIGR03017 289 AEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHH
Confidence 7777777763
No 17
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.75 E-value=7.4 Score=40.93 Aligned_cols=193 Identities=27% Similarity=0.412 Sum_probs=109.6
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHh-------hHhhHHHHHHHHHHH-
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQT-------LKSSEEMLKEQLEKA- 137 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~-------Lk~sE~~LkeQl~e~- 137 (271)
++-+.++..+.++-++|..++....++--.++..+.| + ++......++..+|.. |..-=+.|++|+...
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee--~-~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEE--V-AAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555666666665555555544433333 2 3344455566655543 222334567777443
Q ss_pred --HhHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh--ChhHHHHHHHHHHHHHHHHHHH-----
Q 024197 138 --KKKE-----AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL--DPAIHEEFRRLKNLVEEKDKKV----- 203 (271)
Q Consensus 138 --krRE-----~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll--DPAVNlef~rLr~eLee~~~kl----- 203 (271)
++-. +..-+.|-.|+.+|+.|.+.|+.++.++.- +|.... =.+|+-.....+.+|++.+.++
T Consensus 270 ~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~----e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sD 345 (629)
T KOG0963|consen 270 SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVE----EREKHKAQISALEKELKAKISELEELKEKLNSRSD 345 (629)
T ss_pred hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2333 356677778999999999999888776532 221111 1233344444445555544443
Q ss_pred -HHHHHhh---hhcccC------CC----chhHHHHHHHHHhHHHHHHHHhhhhh--cccchh-------hhHHHHHHHH
Q 024197 204 -KELEENI---AAVSFT------AN----SKMGKALMAKCKTLQEENDEIGRQNE--EGETHQ-------LSVKLALQKS 260 (271)
Q Consensus 204 -e~aq~EL---sAwkFT------pd----S~~GKrLmaKCR~LqeENEELGr~ls--egria~-------LE~eLAlqK~ 260 (271)
+..+.+| .++.|. ++ .+.-.-|+.|=|.|+.||..|-...+ +|++.+ |+.+.+.+|.
T Consensus 346 YeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke 425 (629)
T KOG0963|consen 346 YEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKE 425 (629)
T ss_pred HHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHH
Confidence 3445554 567786 34 46778999999999999999976553 454444 3444444444
Q ss_pred HHHHH
Q 024197 261 LNAEL 265 (271)
Q Consensus 261 ~~eEL 265 (271)
-+..|
T Consensus 426 ~i~kl 430 (629)
T KOG0963|consen 426 LIAKL 430 (629)
T ss_pred HHHHH
Confidence 44443
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.62 E-value=5.9 Score=43.95 Aligned_cols=187 Identities=13% Similarity=0.168 Sum_probs=104.8
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHH------
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEK------ 136 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e------ 136 (271)
-|-.+++.++.++..|..+..+++.+.++..+-+.....+ . .-....-..+.+.+..|...-..++.+...
T Consensus 896 el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL 972 (1311)
T TIGR00606 896 EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS--N-KKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL 972 (1311)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3445555555556666666666666666554444333221 0 000111233334444444444444433321
Q ss_pred --HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197 137 --AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (271)
Q Consensus 137 --~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk 214 (271)
....=..+...+...+.++..+...+..++.........-|.+ .-|+-+.++..++.+.+.++..+..++....
T Consensus 973 ~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l----~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~ 1048 (1311)
T TIGR00606 973 KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWL----QDNLTLRKRENELKEVEEELKQHLKEMGQMQ 1048 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111112245566777777777777777766654433333322 4466666778888888888888888888776
Q ss_pred cCCCchhHHHHHHHHHhHHHHHHHHhhhhh--cccchhhhHHHHHHHHHHH
Q 024197 215 FTANSKMGKALMAKCKTLQEENDEIGRQNE--EGETHQLSVKLALQKSLNA 263 (271)
Q Consensus 215 FTpdS~~GKrLmaKCR~LqeENEELGr~ls--egria~LE~eLAlqK~~~e 263 (271)
| ..+-...+.|.++...|....+ .|.+.+|+.+++..+...+
T Consensus 1049 ~-------~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1049 V-------LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6 3455555666666666664433 3777888888877777663
No 19
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.62 E-value=5.2 Score=35.89 Aligned_cols=165 Identities=22% Similarity=0.340 Sum_probs=104.1
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHH
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIV 146 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~ 146 (271)
|+.-|..-...|..|..|...-+ .+++|+...-. -+....+--|.++...-..++ .|+++|..++.++..+-.
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk-~lq~Rq~kAL~--k~e~~e~~Lpqll~~h~eEvr----~Lr~~LR~~q~~~r~~~~ 89 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLK-QLQKRQEKALQ--KYEDTEAELPQLLQRHNEEVR----VLRERLRKSQEQERELER 89 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33334333344444444433222 34666532221 123555666777765544444 466688888999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhcccCCCc----h
Q 024197 147 TFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE--NIAAVSFTANS----K 220 (271)
Q Consensus 147 rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~--ELsAwkFTpdS----~ 220 (271)
++-.++.||+.+..++..|+.....-..-=|. ....-+..+..++++.+.++..+.. +|..-.|..+. .
T Consensus 90 klk~~~~el~k~~~~l~~L~~L~~dknL~eRe-----eL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~k 164 (194)
T PF15619_consen 90 KLKDKDEELLKTKDELKHLKKLSEDKNLAERE-----ELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKK 164 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999997764321111122 2245567777888888888877764 34444454443 3
Q ss_pred hHHHHHHHHHhHHHHHHHHhhhh
Q 024197 221 MGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 221 ~GKrLmaKCR~LqeENEELGr~l 243 (271)
-.+.++..|..|+.|++.|...+
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999988554
No 20
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.33 E-value=2.3 Score=43.52 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=26.4
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q 024197 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVR 163 (271)
Q Consensus 122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~ 163 (271)
.|+..++.++.|.....--=+++..|+-.+|-|++...-+++
T Consensus 214 ~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~ 255 (554)
T KOG4677|consen 214 KLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQ 255 (554)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344445555555544444456777888888888887665544
No 21
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.25 E-value=5 Score=40.49 Aligned_cols=87 Identities=15% Similarity=0.300 Sum_probs=61.1
Q ss_pred HHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc----------------hhH---HHHHHHHHhHHHHH
Q 024197 176 ARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS----------------KMG---KALMAKCKTLQEEN 236 (271)
Q Consensus 176 lR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS----------------~~G---KrLmaKCR~LqeEN 236 (271)
+..+ .||.+..+..+|.+-....+.-...++.-++...|+|+. +.| ..++.....++.|.
T Consensus 260 l~~~-~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL 338 (563)
T TIGR00634 260 LASV-IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEEL 338 (563)
T ss_pred HHHh-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4444 899988888888888877777777777777788888863 111 35677777777777
Q ss_pred HHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197 237 DEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (271)
Q Consensus 237 EELGr~lsegria~LE~eLAlqK~~~eEL 265 (271)
+.+. ..+..+..|+.++...++...++
T Consensus 339 ~~l~--~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 339 DQLD--DSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHh--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 7776 34456777777777666555443
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.04 E-value=6.6 Score=41.52 Aligned_cols=180 Identities=19% Similarity=0.275 Sum_probs=98.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcc----cCCCCCCCCChhhhHHHHHhhHhhHHHHHHHH---HHHHhHHHHHHHHHhh
Q 024197 78 LATCQLELEAAKSEIQKWHSSFQNE----LFIPPGTSPEPRLVINYLQTLKSSEEMLKEQL---EKAKKKEAAFIVTFAK 150 (271)
Q Consensus 78 ~~~~~~~l~~a~~ei~kW~~~fq~e----~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl---~e~krRE~vlv~rLAt 150 (271)
+..+.++++.-++||+.=| |.| ..|...++ ..+.+..+|+.||.--+.|+.-+ ..++..|.--+..|-.
T Consensus 420 ~~rLE~dvkkLraeLq~~R---q~E~ELRsqis~l~~-~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk 495 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSR---QSEQELRSQISSLTN-NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK 495 (697)
T ss_pred HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555444 222 11333333 34567777777777777776643 2334444433322222
Q ss_pred HHHHH----HHHHHHHHHHHHhcC--------C----------chHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 151 REQEI----AELKSAVRDLKAQLK--------P----------PLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE 208 (271)
Q Consensus 151 KEQEi----qEl~sqi~dlK~~~~--------p----------s~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ 208 (271)
+=.|. +.+-.||++-|.... | ...++|.-. --...++.+||.+|..++..+..++.
T Consensus 496 rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~--~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 496 RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRR--RQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21121 223334444433221 1 112222211 12235799999999999999999999
Q ss_pred hhhhcccC-CC-chhHHHHHHHHHhHHHHHHHHhhhhhc-ccch-hhhHHHHHHHHHHH
Q 024197 209 NIAAVSFT-AN-SKMGKALMAKCKTLQEENDEIGRQNEE-GETH-QLSVKLALQKSLNA 263 (271)
Q Consensus 209 ELsAwkFT-pd-S~~GKrLmaKCR~LqeENEELGr~lse-gria-~LE~eLAlqK~~~e 263 (271)
+++...-- -+ .+---.||+-...+|+.|.-|-+.++. .||. .|..-|.-.|.+.|
T Consensus 574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~e 632 (697)
T PF09726_consen 574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLE 632 (697)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88644332 33 356788999999999999999988864 4443 24444444444443
No 23
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=92.85 E-value=9 Score=36.49 Aligned_cols=202 Identities=16% Similarity=0.206 Sum_probs=123.7
Q ss_pred CCCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197 56 APGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (271)
Q Consensus 56 ~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~ 135 (271)
+.+..+..+-.|..-.++|...|..|...|+.=..++.+-+..|.. .+-..-...-+ ..|++-=.+++..|.
T Consensus 67 g~~~~~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~-~Wtr~~S~~~~-------~~l~~~~~k~~~~L~ 138 (356)
T cd09237 67 KSSSVDSQLELLRPQSASWVNEIDSSYNDLDEEMKEIEKMRKKILA-KWTQSPSSSLT-------ASLREDLVKLKKSLV 138 (356)
T ss_pred cCCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccchhhh-------HHHHHHHHHHHHHHH
Confidence 3445556788899999999999999999999999999888876665 23222222222 244555567777888
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc-CCchHHHHHhhhC----h---hHHHHHHHHHHHHH---HHHHHHH
Q 024197 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL-KPPLMQARRLLLD----P---AIHEEFRRLKNLVE---EKDKKVK 204 (271)
Q Consensus 136 e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~-~ps~~qlR~~LlD----P---AVNlef~rLr~eLe---e~~~kle 204 (271)
++..=.+.+...+..-+..|.-+......|.... .|+...-.-.++| + .|...+.+|+..+. ..+.+-.
T Consensus 139 ~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~ 218 (356)
T cd09237 139 EASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQ 218 (356)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888877767776643 2332111112333 2 47667777775544 3444444
Q ss_pred HHHHhhhhcccCCCchhHHHHHHHHHhHHH-HH----HHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 205 ELEENIAAVSFTANSKMGKALMAKCKTLQE-EN----DEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 205 ~aq~ELsAwkFTpdS~~GKrLmaKCR~Lqe-EN----EELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
..-.+|.. +-.-+.. ...||.--+.+.. +. +||++- ..-...|+..+..|.....+|+.++
T Consensus 219 ~~~~~Lk~-k~~~DDI-~~~ll~~~~~~~~~~e~lF~~eL~kf--~p~~~~l~~~~~~Q~~ll~el~~~~ 284 (356)
T cd09237 219 RVLKDLKQ-KIHNDDI-SDILILNSKSKSEIEKQLFPEELEKF--KPLQNRLEATIFKQSSLINELKIEL 284 (356)
T ss_pred HHHHHHHH-HHhccch-HHHHHHhcccccchHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444422 1122222 2334433322211 10 266652 2445677777888888888887754
No 24
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.60 E-value=3.3 Score=37.02 Aligned_cols=97 Identities=24% Similarity=0.360 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE 208 (271)
Q Consensus 129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ 208 (271)
+||+++.+.+++|.-.-..++...+|...+.-.|..+..- ...|+.-+. .|.+-+..|..++.++..++.
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e----~~eL~k~L~------~y~kdK~~L~~~k~rl~~~ek 100 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE----VEELRKQLK------NYEKDKQSLQNLKARLKELEK 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777766666666666666666555554322 223443332 255666666666666666666
Q ss_pred hhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 209 NIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 209 ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
+|...+.-.+. |-.+|..|+.|-++|-
T Consensus 101 ~l~~Lk~e~ev-----L~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 101 ELKDLKWEHEV-----LEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 66666554444 6666666666666665
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=92.56 E-value=15 Score=38.22 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=27.7
Q ss_pred HHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 119 ~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
.++.++.-...++.++.....+=.-+-..+...++++.++...+..+...
T Consensus 232 ~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~ 281 (880)
T PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555544455555667777777666666665443
No 26
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.56 E-value=6.9 Score=35.96 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=94.0
Q ss_pred HHHhhHHHHHhchhhhhh-------hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197 63 MILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~-------~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~ 135 (271)
.|-.....|...+.++|. ++.+++.+...+.+|.+..+-- +.+|....-+-+....+.|...=..++.++.
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A--l~~g~E~LAr~al~~~~~le~~~~~~~~~~~ 109 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA--LQAGNEDLAREALEEKQSLEDLAKALEAELQ 109 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666664 4667888999999999544433 5566655555555555555555555666676
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCch----HHHHHhhhCh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL----MQARRLLLDP-AIHEEFRRLKNLVEEKDKKVKELE 207 (271)
Q Consensus 136 e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~----~qlR~~LlDP-AVNlef~rLr~eLee~~~kle~aq 207 (271)
.+.--..-+-..+..+++.|.+++++...+++-..... +.-.....+| .--..|.+|+..+++.+.+..-..
T Consensus 110 ~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~ 186 (225)
T COG1842 110 QAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAA 186 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 66655556666778888888888888888876654432 2233445565 455678999999998887765544
No 27
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.19 E-value=9.1 Score=39.72 Aligned_cols=125 Identities=21% Similarity=0.280 Sum_probs=90.2
Q ss_pred HHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc-----------hHHHHHhhhCh---
Q 024197 118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP-----------LMQARRLLLDP--- 183 (271)
Q Consensus 118 ~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps-----------~~qlR~~LlDP--- 183 (271)
+....++.+-++=|+.+++..-|=+.|+-+.=.+|.|...|...|..+|..-... ...+|.++-+-
T Consensus 28 ~~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ 107 (546)
T KOG0977|consen 28 NAASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARE 107 (546)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHH
Confidence 3456678888888999999999999999999999999999999999998876333 35566665554
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhcccCCCchhH--HHHHHHHHhHHHHHHHHhhh
Q 024197 184 --AIHEEFRRLKNLVEEKDKKVKELE-------ENIAAVSFTANSKMG--KALMAKCKTLQEENDEIGRQ 242 (271)
Q Consensus 184 --AVNlef~rLr~eLee~~~kle~aq-------~ELsAwkFTpdS~~G--KrLmaKCR~LqeENEELGr~ 242 (271)
-+-..|.+|+.++++++.+++.++ +++.-|-+.+...-+ ..+-++.+.|.+|+..|.+.
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 245678888888888888888775 555666666665444 23334444555555554433
No 28
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.15 E-value=1.5 Score=46.56 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=91.9
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 134 l~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
|+++.-||.-|+.||..++.|+..++..+.-.++-.. -++.+.+.|+...+..+.....++++|.-.
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~-------------rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQELSNVQAENE-------------RLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998888776654422 245567788888888888888888999888
Q ss_pred ccCCCchhHHHHHHHHHhHHHHHHHHhhhhhccc------------chhhhHHHHHHHHHHHHH
Q 024197 214 SFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE------------THQLSVKLALQKSLNAEL 265 (271)
Q Consensus 214 kFTpdS~~GKrLmaKCR~LqeENEELGr~lsegr------------ia~LE~eLAlqK~~~eEL 265 (271)
||-- .|||+-+--|.+||=-|-|++|.=| |.+|+-++.+.+++++|+
T Consensus 89 K~rE-----~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 89 KFRE-----ARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8753 5699999999999999999998644 566777777777777765
No 29
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=92.12 E-value=13 Score=38.76 Aligned_cols=145 Identities=15% Similarity=0.257 Sum_probs=90.3
Q ss_pred CCCCCChhhhHHHHHhhHh--hHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChh
Q 024197 107 PGTSPEPRLVINYLQTLKS--SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPA 184 (271)
Q Consensus 107 a~~~~~~~l~~~~l~~Lk~--sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPA 184 (271)
.-++++|.....-+..|-+ .+..+.....++.+--..+-.+|...++++.+...+++++|..+.- +||.
T Consensus 233 s~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~---------~d~~ 303 (726)
T PRK09841 233 TMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS---------VDLN 303 (726)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CCCC
Confidence 3467888887765555433 2445555566666666778889999999999999999999988742 2322
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhc-----ccchhhhHH
Q 024197 185 IH-----EEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE-----GETHQLSVK 254 (271)
Q Consensus 185 VN-----lef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lse-----gria~LE~e 254 (271)
.. ..+..|+.++.+.+.+. .+|.+ .|+|+++.=+.|-++...|+++.+++-..+.. -...+|+.+
T Consensus 304 ~ea~~~l~~~~~l~~ql~~l~~~~----~~l~~-~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~ 378 (726)
T PRK09841 304 LEAKAVLEQIVNVDNQLNELTFRE----AEISQ-LYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRD 378 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 12233444444433322 44443 68999998888888888888888777655422 122344444
Q ss_pred HHHHHHHHHHH
Q 024197 255 LALQKSLNAEL 265 (271)
Q Consensus 255 LAlqK~~~eEL 265 (271)
....+..-+.|
T Consensus 379 ~~~~~~lY~~l 389 (726)
T PRK09841 379 VEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.05 E-value=6.4 Score=39.74 Aligned_cols=79 Identities=30% Similarity=0.365 Sum_probs=59.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q 024197 77 TLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIA 156 (271)
Q Consensus 77 ~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiq 156 (271)
.|.+...+|+.++..|++=+ . +-..+...+.+|+.-=++.|..+..++.|+...-..+++++-++.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k----~----------E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~ 347 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAK----E----------EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELN 347 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Confidence 36666777777777776655 1 224455667777777788888888999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 024197 157 ELKSAVRDLKAQL 169 (271)
Q Consensus 157 El~sqi~dlK~~~ 169 (271)
.++..|...+...
T Consensus 348 ~~r~eLea~~~~e 360 (522)
T PF05701_consen 348 KTRSELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHhhh
Confidence 9999887765543
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.87 E-value=14 Score=36.31 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 024197 150 KREQEIAELKSAVRDL 165 (271)
Q Consensus 150 tKEQEiqEl~sqi~dl 165 (271)
..+.++.++..++..+
T Consensus 303 ~l~d~i~~l~~~l~~l 318 (562)
T PHA02562 303 KIKDKLKELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 32
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.61 E-value=22 Score=38.12 Aligned_cols=186 Identities=22% Similarity=0.239 Sum_probs=102.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhc--ccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHH----hHHHHHHHHH
Q 024197 75 KDTLATCQLELEAAKSEIQKWHSSFQN--ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAK----KKEAAFIVTF 148 (271)
Q Consensus 75 ~~~~~~~~~~l~~a~~ei~kW~~~fq~--e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~k----rRE~vlv~rL 148 (271)
-+-++++|++.+.+..+..|=.+-... ++=+.-...-..++-..+ ..++.-|.++++|+.+.+ -+=......+
T Consensus 68 ~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~ 146 (716)
T KOG4593|consen 68 EDELMQLQNSHKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ-EALKGQEEKLQEQLERNRNQCQANLKKELELL 146 (716)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888777777665533322 222322222233444444 677888888888886554 2222223344
Q ss_pred hhHHHHHHHHHHHHHHHHHhc-----CCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHH
Q 024197 149 AKREQEIAELKSAVRDLKAQL-----KPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK 223 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~-----~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GK 223 (271)
-.++..++++.+.+.-+.... ..-.-..+-..++-.|+.+-.+++......+.++...++...+..=-.++
T Consensus 147 ~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~---- 222 (716)
T KOG4593|consen 147 REKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADH---- 222 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 556666666666655543332 11123345566788888888888887777777777766555433110000
Q ss_pred HHHHHHH-----hHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHh
Q 024197 224 ALMAKCK-----TLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267 (271)
Q Consensus 224 rLmaKCR-----~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk 267 (271)
.|+..- .+.+|.+.+.+... ..|+.|+-....+..+.+|+++
T Consensus 223 -~qq~a~~~~ql~~~~ele~i~~~~~-dqlqel~~l~~a~~q~~ee~~~ 269 (716)
T KOG4593|consen 223 -EQQNAELEQQLSLSEELEAINKNMK-DQLQELEELERALSQLREELAT 269 (716)
T ss_pred -HHHHhhHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111100 12335555555554 5666666666666666666653
No 33
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.98 E-value=19 Score=39.64 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=14.9
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHH
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEI 92 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei 92 (271)
|-.++..+..|...+.+.+.++..+...+
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1163)
T COG1196 676 LAELEAQLEKLEEELKSLKNELRSLEDLL 704 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444443
No 34
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.77 E-value=18 Score=40.44 Aligned_cols=136 Identities=20% Similarity=0.273 Sum_probs=91.2
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHH---HHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHH
Q 024197 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQ---EIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE 198 (271)
Q Consensus 122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQ---EiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee 198 (271)
.|+....++.++-.+..+||+.+..-...-|+ |+.-.+.++..+..... .+-.++..|+..+..
T Consensus 795 eik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~-------------~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 795 EIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQIS-------------SLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHh
Confidence 34555566666667778888877665554443 33333444443332211 133455667777777
Q ss_pred HHHHHHHHHHhhhhc--ccCCCchhHHHHHHHHHhHHHHHH--HHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 199 KDKKVKELEENIAAV--SFTANSKMGKALMAKCKTLQEEND--EIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 199 ~~~kle~aq~ELsAw--kFTpdS~~GKrLmaKCR~LqeENE--ELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
....++.++.+|.-. ++...++.=.-++..|.....|+. +|-+.-.++++..++++-+..++.++-|.+.|.
T Consensus 862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~ 937 (1174)
T KOG0933|consen 862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHE 937 (1174)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhcc
Confidence 777777777766443 455556555668999999999987 567778889999999999999999988877663
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.70 E-value=6.3 Score=43.72 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCc
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPP 172 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps 172 (271)
+..|....+++.++..+|.++.....+.
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~ 818 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGS 818 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444566788888888888887765543
No 36
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.62 E-value=7.8 Score=41.34 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=43.6
Q ss_pred HhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Q 024197 121 QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLK 170 (271)
Q Consensus 121 ~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ 170 (271)
..+..--..|+..+.+.+-||.-++.=.+.+|-|.--+.-+|+.||..+.
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv 121 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV 121 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444456788999999999999999999999999999999999999863
No 37
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.53 E-value=3.8 Score=39.95 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=17.7
Q ss_pred ccCCCchhHHHHHHHHHhHHHHHHH
Q 024197 214 SFTANSKMGKALMAKCKTLQEENDE 238 (271)
Q Consensus 214 kFTpdS~~GKrLmaKCR~LqeENEE 238 (271)
+|+|+.+.=+.|-++...|+....+
T Consensus 269 ~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 269 RYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HhcccChHHHHHHHHHHHHHHHHHh
Confidence 6788887777777777777766443
No 38
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=90.38 E-value=10 Score=33.94 Aligned_cols=170 Identities=17% Similarity=0.263 Sum_probs=93.2
Q ss_pred HHHhhHHHHHhchhhhhhh-------HHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhH---HHHHH
Q 024197 63 MILSLRESLQNCKDTLATC-------QLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSE---EMLKE 132 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~-------~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE---~~Lke 132 (271)
+|-.+++.|...+..+|.. +.+++.+...+.+|.+....- +..|. ..|-...|..-...+ ..|+.
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A--l~~G~---EdLAr~Al~~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELA--LSKGR---EDLARAALIEKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777765 557788889999999554433 44453 344444444333333 34555
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchH--HHHHhhh--C-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLM--QARRLLL--D-PAIHEEFRRLKNLVEEKDKKVKELE 207 (271)
Q Consensus 133 Ql~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~--qlR~~Ll--D-PAVNlef~rLr~eLee~~~kle~aq 207 (271)
|+...+.--.-|-.+|..++..|.++++.-..|..-...... +....+- | ..-...|.||...+...+...+..
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~- 185 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESY- 185 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 665555555556666666666666666654444332222211 1112211 1 122345677777766655443332
Q ss_pred HhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHH
Q 024197 208 ENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSL 261 (271)
Q Consensus 208 ~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~ 261 (271)
+. -++ ..|..+..+||. + ..++.+|+.+|..
T Consensus 186 ----~~-~~~------------~~l~~~l~~l~~----~--~~vd~eLa~LK~~ 216 (219)
T TIGR02977 186 ----DL-GRK------------PSLEDEFAELEA----D--DEIERELAALKAK 216 (219)
T ss_pred ----hc-cCC------------CCHHHHHHHhcC----C--ChHHHHHHHHHhh
Confidence 21 112 236666667762 1 4678888888764
No 39
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.81 E-value=17 Score=33.82 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHHHHH
Q 024197 77 TLATCQLELEAAKSE 91 (271)
Q Consensus 77 ~~~~~~~~l~~a~~e 91 (271)
.+.+++++++.++.+
T Consensus 82 ~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 82 DAAELESQVLRLEAE 96 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 40
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.23 E-value=4.2 Score=38.65 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=51.7
Q ss_pred hc-hhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhH
Q 024197 73 NC-KDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR 151 (271)
Q Consensus 73 ~~-~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtK 151 (271)
+| +..+..++.+++.+..|.+.+..-+..-.-. ...+.+-.-+..++..|+.-|+.+.++|.+..+-...+...|..+
T Consensus 5 eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~-~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 5 ECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEE-SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp --------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 4556778999999999999988544432200 111233345566777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL 210 (271)
+.|..++...-..+-.. -.........+..+....+..+..+++.|
T Consensus 84 e~e~~~l~~eE~~~~~~-------------~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 84 EEELEELDEEEEEYWRE-------------YNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666665533322111 12233444555566666666666666655
No 41
>PF13514 AAA_27: AAA domain
Probab=89.06 E-value=39 Score=37.01 Aligned_cols=97 Identities=24% Similarity=0.409 Sum_probs=59.6
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhccc-CCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHH
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNEL-FIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFI 145 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~-~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv 145 (271)
|.+.++.....+..++.++..+..++..|+..++.-- -++-.....|..+...+..++..-+.+++. . -+-
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~----~----~~~ 749 (1111)
T PF13514_consen 678 LEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEI----R----ELR 749 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----H----HHH
Confidence 4455566777778888888888888888887776411 121122234666666666666544433322 1 233
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCC
Q 024197 146 VTFAKREQEIAELKSAVRDLKAQLKP 171 (271)
Q Consensus 146 ~rLAtKEQEiqEl~sqi~dlK~~~~p 171 (271)
.+++..++++..+...++.|-....|
T Consensus 750 ~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 750 RRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 46777778888888888877655544
No 42
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.71 E-value=18 Score=38.93 Aligned_cols=148 Identities=23% Similarity=0.282 Sum_probs=79.9
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHh-hhChhHHHHHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRL-LLDPAIHEEFRRLKNL 195 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~-LlDPAVNlef~rLr~e 195 (271)
.+.+..|+..-+.|.-.|.+....=-.+.++|-..|+-|.++++++..++..-.-.-.++.+. -.-..+-.=+.-+..+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 344555555555555555555545455556666666666666666665543322222333322 1111111112234566
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcc-------------cchhhhHHHHHHHHHH
Q 024197 196 VEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG-------------ETHQLSVKLALQKSLN 262 (271)
Q Consensus 196 Lee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lseg-------------ria~LE~eLAlqK~~~ 262 (271)
+.....++..+..+|..-+...+- +.+||+.|+.+.+-..+..... -|+.-...||-+.+.+
T Consensus 675 ~~~l~~Ki~~Le~Ele~er~~~~e-----~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI 749 (769)
T PF05911_consen 675 AEELQSKISSLEEELEKERALSEE-----LEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETI 749 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchh-----hhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHH
Confidence 677777777777777766655444 8999999998877665432211 2223334455666666
Q ss_pred HHHHhhh
Q 024197 263 AELKSQF 269 (271)
Q Consensus 263 eELrk~~ 269 (271)
.=|-+++
T Consensus 750 ~sLGkQL 756 (769)
T PF05911_consen 750 ASLGKQL 756 (769)
T ss_pred HHHHHHH
Confidence 6665554
No 43
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.36 E-value=27 Score=35.31 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=32.7
Q ss_pred hhhhhhHHHHHHHHHHH-HHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Q 024197 76 DTLATCQLELEAAKSEI-QKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQE 154 (271)
Q Consensus 76 ~~~~~~~~~l~~a~~ei-~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQE 154 (271)
..|...+.++++-..+| ..|+. ..-+...|..++..=.++..|+.++...-..+-..|+..+..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~---------------~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQ---------------RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 44555566666655555 33431 122334444455555555555555555555555555554444
Q ss_pred HH
Q 024197 155 IA 156 (271)
Q Consensus 155 iq 156 (271)
+.
T Consensus 103 l~ 104 (420)
T COG4942 103 LN 104 (420)
T ss_pred HH
Confidence 43
No 44
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.33 E-value=14 Score=31.04 Aligned_cols=105 Identities=23% Similarity=0.346 Sum_probs=73.3
Q ss_pred hcCCCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHH
Q 024197 54 ETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQ 133 (271)
Q Consensus 54 ~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQ 133 (271)
..+.|..+++|=.|-..|..+..-+++++.++.....+=+.- ..| ++ ... -..+.+.....-=..|+.+
T Consensus 8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l----~~E-iv-~l~-----~~~e~~~~~~~~~~~L~~e 76 (120)
T PF12325_consen 8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDEL----REE-IV-KLM-----EENEELRALKKEVEELEQE 76 (120)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HH-HHH-----HHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888888888877776654432222 222 11 100 0112233344444578889
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 134 l~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
+.+...|...++--|-.|.-++.|++.-|.|+|.+-
T Consensus 77 l~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 77 LEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999873
No 45
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.19 E-value=18 Score=35.24 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=99.5
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHH
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEA 142 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~ 142 (271)
++-..|+.-..-+..+..++..|..|+++|.--+..+..-.....+.++.+.. .-.+.|=.||.+++
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---------~ere~lV~qLEk~~---- 139 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---------HEREDLVEQLEKLR---- 139 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---------hHHHHHHHHHHHHH----
Confidence 55567777778888999999999999999988887666543333333322211 11222222332222
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhH
Q 024197 143 AFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (271)
Q Consensus 143 vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G 222 (271)
..+..+. +|+++. --+...+..|-+.++.|+..++.||+.+=-.-.+
T Consensus 140 ----------~q~~qLe---~d~qs~-----------------lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~--- 186 (319)
T PF09789_consen 140 ----------EQIEQLE---RDLQSL-----------------LDEKEELVTERDAYKCKAHRLNHELNYILNGDEN--- 186 (319)
T ss_pred ----------HHHHHHH---HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---
Confidence 2222222 222222 2355777788889999999999999876433222
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 223 KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
+++ =+..|.-||-.|- -|+.+++.|..+.+..+.-.|+.++
T Consensus 187 -riv-DIDaLi~ENRyL~-----erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 187 -RIV-DIDALIMENRYLK-----ERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred -Ccc-cHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5788888998887 5668888888888888877776553
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.13 E-value=24 Score=33.41 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhccc
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE 247 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegr 247 (271)
+..+..+|...+.++.+++.++..++=.= ..+-++...++.+..++.+.....|
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i-----~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKI-----EELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555555555555555552111 2355566666667777766664443
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.03 E-value=18 Score=40.43 Aligned_cols=88 Identities=19% Similarity=0.313 Sum_probs=53.3
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197 135 EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (271)
Q Consensus 135 ~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk 214 (271)
.+.+.+|+-.----+.+|-++-++...|..+++-...++..+... -.+|.+|.-|+++.++.+.-.+..|..
T Consensus 769 ~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~------~~e~e~l~lE~e~l~~e~~~~k~~l~~-- 840 (1174)
T KOG0933|consen 769 DKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR------ENEYERLQLEHEELEKEISSLKQQLEQ-- 840 (1174)
T ss_pred HHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344556666665666667777777777666655544443333222 135666777777777666666666544
Q ss_pred cCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 215 FTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 215 FTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
+...|+.|..|+.+|-
T Consensus 841 ----------~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 841 ----------LEKQISSLKSELGNLE 856 (1174)
T ss_pred ----------HHHHHHHHHHHHHHHH
Confidence 4567777777777665
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.93 E-value=29 Score=34.10 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=9.8
Q ss_pred HHHHHhhHhhHHHHHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQLEKA 137 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e~ 137 (271)
.+.+..|...-..|+.|+.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l 318 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455444433
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.46 E-value=22 Score=36.78 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHH-HHHHhhhh
Q 024197 187 EEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEE-NDEIGRQN 243 (271)
Q Consensus 187 lef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeE-NEELGr~l 243 (271)
-.|+.||.++.+.+.++.++.. +|+|+.+.=+.|-+....|+.+ .+|+.+.+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~-----~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~ 340 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLST-----TMLANHPRVVAAKSSLADLDAQIRSELQKIT 340 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776666655443 5789888877777777777766 34555544
No 50
>PRK09039 hypothetical protein; Validated
Probab=87.11 E-value=30 Score=33.37 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAw 213 (271)
+.+|+++|+..+..+..++.+|.+.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666554
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.79 E-value=47 Score=35.35 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=40.0
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 115 l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
-+..+|+..|..|..|+.|+.-...=|..+-..|..+.+|..++.+-++.|-.+.
T Consensus 429 kLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR 483 (697)
T PF09726_consen 429 KLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR 483 (697)
T ss_pred HHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888766666666777777888888888888777775554
No 52
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.42 E-value=78 Score=37.52 Aligned_cols=83 Identities=30% Similarity=0.424 Sum_probs=55.5
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHH
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAA 143 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~v 143 (271)
|..|+..|..-+.-+-.|.+++.-.+.+.++|+-.+|. ++..-..++| +++.+|++-=.+|+..+.
T Consensus 1259 l~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~--L~~k~k~~d~----~~~~kL~~ei~~Lk~el~-------- 1324 (1822)
T KOG4674|consen 1259 LAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQD--LLEKYKDSDK----NDYEKLKSEISRLKEELE-------- 1324 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCH----HHHHHHHHHHHHHHHHHH--------
Confidence 45566666677777788888888999999999976665 2334445555 556666665455555543
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 024197 144 FIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK 166 (271)
.++-.|++|..-+..++
T Consensus 1325 ------~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1325 ------EKENLIAELKKELNRLQ 1341 (1822)
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 56666677776666666
No 53
>PRK10698 phage shock protein PspA; Provisional
Probab=86.39 E-value=25 Score=31.87 Aligned_cols=171 Identities=18% Similarity=0.258 Sum_probs=86.7
Q ss_pred HHHHhhHHHHHhchhhhhh-------hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHH---HHH
Q 024197 62 GMILSLRESLQNCKDTLAT-------CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEE---MLK 131 (271)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~-------~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~---~Lk 131 (271)
=+|-.+++.|.+.+..+|. ++.++..+...+.+|.....- -+.+|.. .|-...|..=+..++ .|+
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~--Al~~G~E---dLAr~AL~~K~~~~~~~~~l~ 105 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAEL--ALRKEKE---DLARAALIEKQKLTDLIATLE 105 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888877776 556788889999999854332 2545543 333332222222222 233
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc--hHHHHHhh----hChhHHHHHHHHHHHHHHHHHHHHH
Q 024197 132 EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP--LMQARRLL----LDPAIHEEFRRLKNLVEEKDKKVKE 205 (271)
Q Consensus 132 eQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps--~~qlR~~L----lDPAVNlef~rLr~eLee~~~kle~ 205 (271)
.|+.....--.-|-..+..++..|.+.++.-..|..-++.. ..+++.++ .+.++. .|.+|...|...+.+.+-
T Consensus 106 ~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~-~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 106 HEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMA-RFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHH-HHHHHHHHHHHHHHHHhH
Confidence 33333333333333444444444444444433332222111 11122222 233333 567777777777666654
Q ss_pred HHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 024197 206 LEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (271)
Q Consensus 206 aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~ 262 (271)
. ...+. ..|..|-.+|+. + ..++.+|+.+|..+
T Consensus 185 ~-------~~~~~-----------~~l~~e~~~le~----~--~~ve~ELa~LK~~~ 217 (222)
T PRK10698 185 H-------GFGKQ-----------KSLDQQFAELKA----D--DEISEQLAALKAKM 217 (222)
T ss_pred h-------hccCC-----------CCHHHHHHHhhc----c--chHHHHHHHHHHHh
Confidence 3 11111 236666666642 1 35888888888654
No 54
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=86.34 E-value=75 Score=37.85 Aligned_cols=147 Identities=24% Similarity=0.304 Sum_probs=83.3
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh-h----HHHHHHHHHHHHHH
Q 024197 124 KSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP-A----IHEEFRRLKNLVEE 198 (271)
Q Consensus 124 k~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDP-A----VNlef~rLr~eLee 198 (271)
.+.......|++--++||.=+..-=...|.+.-+..+++.++|..|..+...+...+.+- - +...-+.|..++..
T Consensus 1142 ee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~ 1221 (1930)
T KOG0161|consen 1142 EEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIAD 1221 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555556777766666677777777888888888888776665555333321 1 12222222222222
Q ss_pred HHHHHH--------------HHHHhhhhcccCCC--chhHHHHHHHHHhHHHHHHHHhhhhhc--ccchhhhHHHHHHHH
Q 024197 199 KDKKVK--------------ELEENIAAVSFTAN--SKMGKALMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKS 260 (271)
Q Consensus 199 ~~~kle--------------~aq~ELsAwkFTpd--S~~GKrLmaKCR~LqeENEELGr~lse--gria~LE~eLAlqK~ 260 (271)
....+. .+...|+..+.--+ ...-.-|++++-.|+.||.++.+++.+ ..+..+........+
T Consensus 1222 l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ 1301 (1930)
T KOG0161|consen 1222 LAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALES 1301 (1930)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 222222 22222222221100 111122788999999999999999864 455666677777777
Q ss_pred HHHHHHhhhc
Q 024197 261 LNAELKSQFE 270 (271)
Q Consensus 261 ~~eELrk~~e 270 (271)
+.++++++++
T Consensus 1302 qle~~k~qle 1311 (1930)
T KOG0161|consen 1302 QLEELKRQLE 1311 (1930)
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 55
>PRK11519 tyrosine kinase; Provisional
Probab=86.30 E-value=46 Score=34.79 Aligned_cols=147 Identities=14% Similarity=0.239 Sum_probs=83.1
Q ss_pred CCCCChhhhHHHHHhhHhhHHHHHHHH----HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc--hHHHHHhhh
Q 024197 108 GTSPEPRLVINYLQTLKSSEEMLKEQL----EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP--LMQARRLLL 181 (271)
Q Consensus 108 ~~~~~~~l~~~~l~~Lk~sE~~LkeQl----~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps--~~qlR~~Ll 181 (271)
-++++|.....-+..+ .+.=+.+++ .++.+--..+-.+|...++++.+....++++|..+.-- ..+++.
T Consensus 234 ~~~~dP~~Aa~iaN~l--~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~--- 308 (719)
T PRK11519 234 YTGEDREQIRDILNSI--TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKA--- 308 (719)
T ss_pred EEcCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---
Confidence 3577888777666555 333333333 22222334667788888888888888888888876531 111111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhc-----ccchhhhHHHH
Q 024197 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE-----GETHQLSVKLA 256 (271)
Q Consensus 182 DPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lse-----gria~LE~eLA 256 (271)
..-.+..++.++.+.+.+ ..+|+. +|+|+++.=+.|.++-+.|+.+.+++-..+.. -...+|+.+..
T Consensus 309 ---~l~~~~~l~~ql~~l~~~----~~~l~~-~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~ 380 (719)
T PRK11519 309 ---VLDSMVNIDAQLNELTFK----EAEISK-LYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVE 380 (719)
T ss_pred ---HHHHHHHHHHHHHHHHHH----HHHHHH-HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111123334444333222 233433 69999998888988888888887776544432 12334555555
Q ss_pred HHHHHHHHHHh
Q 024197 257 LQKSLNAELKS 267 (271)
Q Consensus 257 lqK~~~eELrk 267 (271)
..++.-+.|-+
T Consensus 381 ~~~~lY~~lL~ 391 (719)
T PRK11519 381 SGQQVYMQLLN 391 (719)
T ss_pred HHHHHHHHHHH
Confidence 54444444433
No 56
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.01 E-value=16 Score=33.51 Aligned_cols=36 Identities=31% Similarity=0.632 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc
Q 024197 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP 172 (271)
Q Consensus 130 LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps 172 (271)
||+||-++. .=++.|-.||--+++++.+.+......
T Consensus 15 LKqQLke~q-------~E~~~K~~Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 15 LKQQLKESQ-------AEVNQKDSEIVSLRAQLRELRAELRNK 50 (202)
T ss_pred HHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 677776654 457888899999999999998876554
No 57
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.85 E-value=31 Score=39.08 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=83.8
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhh-HhhHHHHHHHHHHHHhHHHHH
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTL-KSSEEMLKEQLEKAKKKEAAF 144 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~L-k~sE~~LkeQl~e~krRE~vl 144 (271)
..+|.|.+|...+-.+..+++.+..++.-.+++...- ...-+..-.-++.|..+ ..-+..|.+++.+++++=..+
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~----~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~ 477 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA----RIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGI 477 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4566677777777777777777766665554332221 01111122222233222 233455667777888887788
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh--ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL--DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFT 216 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll--DPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFT 216 (271)
..-+-.+|.++.....+++..|..++-+...|.-++. .-+++ =+..|+..|......+++-+.+|..|+=.
T Consensus 478 ~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~-~~e~lk~~L~~~~~~~~e~~~~l~~~k~~ 550 (1293)
T KOG0996|consen 478 REEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLK-KVEELKGKLLASSESLKEKKTELDDLKEE 550 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888777655333322211 11111 23456666666666666666666666443
No 58
>PRK09039 hypothetical protein; Validated
Probab=85.49 E-value=7.6 Score=37.33 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=17.1
Q ss_pred hHHHHhhHHH-HHhchhhhhhhHHHHHHHHHHH
Q 024197 61 TGMILSLRES-LQNCKDTLATCQLELEAAKSEI 92 (271)
Q Consensus 61 t~~il~lr~~-l~~~~~~~~~~~~~l~~a~~ei 92 (271)
+...|+|+.+ ...-...|+.+++.+++|+..-
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r 97 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAER 97 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555432 3344556666777666655443
No 59
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.44 E-value=39 Score=33.12 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCC-----chHHHHHhhhCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKP-----PLMQARRLLLDP--AIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~p-----s~~qlR~~LlDP--AVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
...++..+.+|.+...++..++..... ...++.++..+- .+...+...+.++...+..++.++..|.-
T Consensus 242 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555555555555554332211 012222222221 24455556666666666666666666543
No 60
>PRK03918 chromosome segregation protein; Provisional
Probab=84.81 E-value=54 Score=34.20 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.5
Q ss_pred hHHHHHhhHhh
Q 024197 116 VINYLQTLKSS 126 (271)
Q Consensus 116 ~~~~l~~Lk~s 126 (271)
+.+.+..|+..
T Consensus 590 ~~~~~~~l~~~ 600 (880)
T PRK03918 590 LEERLKELEPF 600 (880)
T ss_pred HHHHHHHhhhh
Confidence 33444444433
No 61
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=84.72 E-value=38 Score=32.36 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=115.3
Q ss_pred chhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHH
Q 024197 59 VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAK 138 (271)
Q Consensus 59 ~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~k 138 (271)
.-...+-.|.+-.++|...|..|+.-|..-..+-.+-+..|.. .+-...+. .+.. .|+.-=.+++..|..+.
T Consensus 76 ~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~-rWtr~pS~---~~~~----~l~~~i~~~r~~L~~A~ 147 (339)
T cd09238 76 ALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGT-AWTRPPSA---TLTK----NLWERLNRFRVNLEQAG 147 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCccH---HHHH----HHHHHHHHHHHHHHHHH
Confidence 3456777788888899999999999999999999888876655 33222211 1221 44555566677888888
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHh-hhChhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhcc
Q 024197 139 KKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRL-LLDPAIHEEFRRLK---NLVEEKDKKVKELEENIAAVS 214 (271)
Q Consensus 139 rRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~-LlDPAVNlef~rLr---~eLee~~~kle~aq~ELsAwk 214 (271)
.-...+..++..-+.-+.-+.. ..+... -|++.. .. .++|.++.++..|| ++|...+.+-....+.|...+
T Consensus 148 ~sD~~v~~k~~~~~~~l~~L~~--~~~~~~-~Ps~~~--~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~ 222 (339)
T cd09238 148 DSDESLRRRIEDAMDGMLILDD--EPAAAA-APTLRA--PMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALK 222 (339)
T ss_pred hhHHHHHHHHHHHHHHHHhcCc--HhhHhh-CCCCCC--cccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888777777776622 333333 444211 11 22344444555555 445555555555555554433
Q ss_pred cCCCchhHHHHHHHHHhHHH-HHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 215 FTANSKMGKALMAKCKTLQE-ENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 215 FTpdS~~GKrLmaKCR~Lqe-ENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
- .|....+ ||..-..+.. =++||++- ..-...++..+..|.....+|+.+++
T Consensus 223 ~-~DDI~~~-ll~~~~~~e~lF~~eL~kf--~~~~~~v~~~~~~Q~~ll~~i~~~n~ 275 (339)
T cd09238 223 R-NDNILAK-VMATTGSYDALFKEELKKY--DSVREAVSKNISSQDDLLSRLRALNE 275 (339)
T ss_pred h-cCCcHHH-HHHhhhhhHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333333 3333222222 12367652 34457777788888888888876553
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.61 E-value=47 Score=34.65 Aligned_cols=87 Identities=26% Similarity=0.346 Sum_probs=46.5
Q ss_pred hhhcCCCchhHH--HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc-ccCCCCCCCCChhhhHHHHHhhHhhHH
Q 024197 52 VEETAPGVATGM--ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEE 128 (271)
Q Consensus 52 ~~~~~~~~~t~~--il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~-e~~i~a~~~~~~~l~~~~l~~Lk~sE~ 128 (271)
+++++...+.-- |=-|++.+.+.+..+...+..+..|...+.-|-..+-+ ++-+ +.....-+.+.+++..|+..-.
T Consensus 101 l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~-~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 101 LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI-NTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 344444443322 33455555555555555555555555555555543332 1111 2223344567777888888888
Q ss_pred HHHHHHHHHHh
Q 024197 129 MLKEQLEKAKK 139 (271)
Q Consensus 129 ~LkeQl~e~kr 139 (271)
.|..+|..+++
T Consensus 180 rl~~~l~~~r~ 190 (546)
T KOG0977|consen 180 RLREELARARK 190 (546)
T ss_pred hhHHHHHHHHH
Confidence 88888877665
No 63
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.61 E-value=32 Score=31.50 Aligned_cols=132 Identities=23% Similarity=0.318 Sum_probs=66.1
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHH
Q 024197 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKN 194 (271)
Q Consensus 115 l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~ 194 (271)
-+..-|..|..+-.+|..+..+.++ .+-+-|...+.+...+.+||.+... .. ..+-.=-+|+.++..||.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~-------~ve~~ee~na~L~~e~~~L~~q~~s-~Q--qal~~aK~l~eEledLk~ 74 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQR-------SVETAEEGNAQLAEEITDLRKQLKS-LQ--QALQKAKALEEELEDLKT 74 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH
Confidence 3455677788888888887755443 3444455555555555555544221 11 011122355666666666
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhh--hhcccchhhhHHHHHHHHH
Q 024197 195 LVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQ--NEEGETHQLSVKLALQKSL 261 (271)
Q Consensus 195 eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~--lsegria~LE~eLAlqK~~ 261 (271)
.+...+.....+..+-.-..= --+.|.++.-+||+||..|-.. ...-++.+|-++.+..+.+
T Consensus 75 ~~~~lEE~~~~L~aq~rqlEk-----E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 75 LAKSLEEENRSLLAQARQLEK-----EQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 665555544444333222211 1134677777777777655321 1223445554444444333
No 64
>PRK10869 recombination and repair protein; Provisional
Probab=84.59 E-value=50 Score=33.72 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=59.4
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc----------------hhH---HHHHHHHHhHHHHHHHHhh
Q 024197 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS----------------KMG---KALMAKCKTLQEENDEIGR 241 (271)
Q Consensus 181 lDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS----------------~~G---KrLmaKCR~LqeENEELGr 241 (271)
.||.+.....+|.+-....+.-...+..-+....|+|+. +-| .-+++....+++|.++|.
T Consensus 259 ~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~- 337 (553)
T PRK10869 259 MDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD- 337 (553)
T ss_pred hCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-
Confidence 488887777777777777777777777777777888852 222 457777788888888887
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHH
Q 024197 242 QNEEGETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 242 ~lsegria~LE~eLAlqK~~~eELr 266 (271)
..+.++..|+.++...++...++-
T Consensus 338 -~~e~~l~~Le~e~~~l~~~l~~~A 361 (553)
T PRK10869 338 -DQEDDLETLALAVEKHHQQALETA 361 (553)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788887777766655543
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=84.53 E-value=11 Score=39.16 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh----cccCCCc---------hhHHH---HHHHHHhHHHHHHHHhhhh
Q 024197 188 EFRRLKNLVEEKDKKVKELEENIAA----VSFTANS---------KMGKA---LMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~ELsA----wkFTpdS---------~~GKr---LmaKCR~LqeENEELGr~l 243 (271)
.+..|..++.....++..+..+|.. -.|.|.. |+.+. -.+-...|+.||++|-..+
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555543 2455542 33322 3567888999999987666
No 66
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.53 E-value=9.6 Score=37.94 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=70.7
Q ss_pred HHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHH
Q 024197 62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKE 141 (271)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE 141 (271)
.-|-.|+..|+.-.+.++.+++++.++++.+.-|.+.-. ........ ........+..+.+.-.-+.+|+.+...+-
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIRE--GLTEPIKD-SAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhcccccc-ccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999988873321 11100000 000011234456677777778888888777
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 142 AAFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 142 ~vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
.-+-..+...++++.++..+++.+-
T Consensus 148 ~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 148 REAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7788888888888888888877663
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.11 E-value=52 Score=33.52 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----cCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhH--HHHHH
Q 024197 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVS----FTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSV--KLALQ 258 (271)
Q Consensus 185 VNlef~rLr~eLee~~~kle~aq~ELsAwk----FTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~--eLAlq 258 (271)
+...+..||..-.+++.++...+..|+.++ =..=+-+....+.-...+..+.+.|.+.+..|.|---.+ ++...
T Consensus 402 i~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~ 481 (569)
T PRK04778 402 LSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEA 481 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 445555666666666666666666555544 121222334466666677777777777777776543332 34444
Q ss_pred HHHHHHHH
Q 024197 259 KSLNAELK 266 (271)
Q Consensus 259 K~~~eELr 266 (271)
....+.|.
T Consensus 482 ~~~~~~L~ 489 (569)
T PRK04778 482 TEDVETLE 489 (569)
T ss_pred HHHHHHHH
Confidence 44444443
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.04 E-value=18 Score=37.92 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHH
Q 024197 127 EEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVK 204 (271)
Q Consensus 127 E~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle 204 (271)
-..|.+++...+.+..-.+.++-.+|-.|.++++++...... .|+. --.-.+=....++..|+.+++....++.
T Consensus 31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~-~~pa---~pse~E~~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP-EPPA---GPSEVEQQLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-cccc---cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888888888888887766422 2211 1111122334455566666666655544
No 69
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=83.26 E-value=36 Score=35.63 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=69.5
Q ss_pred HHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhh
Q 024197 71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAK 150 (271)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAt 150 (271)
++--...|..++.+|+.|..+++.++. ..-++... .+.....+.+ ..|+.|+.+++.++.-+..++..
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~---~~~~~d~~--~ea~~~l~~~-------~~l~~ql~~l~~~~~~l~~~~~~ 336 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQ---QRDSVDLN--LEAKAVLEQI-------VNVDNQLNELTFREAEISQLYKK 336 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCC--HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 444556777888888899888888883 33233211 1112222222 44566777777777666666655
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHH-HhhhChhHHHHHHHHHHHHHHHHHHHHHH
Q 024197 151 REQEIAELKSAVRDLKAQLKPPLMQAR-RLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (271)
Q Consensus 151 KEQEiqEl~sqi~dlK~~~~ps~~qlR-~~LlDPAVNlef~rLr~eLee~~~kle~a 206 (271)
.--.++.+..+++.|+... ..++ ++.--|..-.++.+|..+.+-.+.-+..+
T Consensus 337 ~hP~v~~l~~~~~~L~~~~----~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 337 DHPTYRALLEKRQTLEQER----KRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred cCchHHHHHHHHHHHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554332 1122 23334777777888887777776666543
No 70
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.09 E-value=37 Score=38.59 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=76.9
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHhH---HHHHHHHHhhHHHHHHHHHHHHHHHH-HhcCCc-hHHHHHhhhChhHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQLEKAKKK---EAAFIVTFAKREQEIAELKSAVRDLK-AQLKPP-LMQARRLLLDPAIHEEFRR 191 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e~krR---E~vlv~rLAtKEQEiqEl~sqi~dlK-~~~~ps-~~qlR~~LlDPAVNlef~r 191 (271)
.-.++++...++-|+.|+.+..++ ..+=..+|-.++..|.+++.++.++- .+.... ...| +.-+|-.-+..++.
T Consensus 826 ~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~l-q~~i~~i~~e~~q~ 904 (1293)
T KOG0996|consen 826 TASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKEL-QNKIDEIGGEKVQA 904 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHhhchhhHH
Confidence 345566666666677777665544 11112233334444555555555541 000000 0111 33466777788888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhh
Q 024197 192 LKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 192 Lr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~ 268 (271)
=+.+++....+++.+..+++-.++ ...+.-+.++||.....+.+.--+ ..++.+..|..++--.+....|+...
T Consensus 905 qk~kv~~~~~~~~~l~~~i~k~~~--~i~~s~~~i~k~q~~l~~le~~~~-~~e~e~~~L~e~~~~~~~k~~E~~~~ 978 (1293)
T KOG0996|consen 905 QKDKVEKINEQLDKLEADIAKLTV--AIKTSDRNIAKAQKKLSELEREIE-DTEKELDDLTEELKGLEEKAAELEKE 978 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHH--HHhcCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 889999999999999888877754 223333355666554444333221 22344444444444444444444433
No 71
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=81.97 E-value=49 Score=31.68 Aligned_cols=193 Identities=14% Similarity=0.187 Sum_probs=113.1
Q ss_pred HHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHH
Q 024197 62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKE 141 (271)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE 141 (271)
.++-.|.+-.++|...|..|+.-|..=..+-.+-+..|..+.+-...+ ..+. ..|+.-=.+++..|..+..=.
T Consensus 78 ~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S---~~~~----~~l~~~~~~~~~~L~~A~~sD 150 (353)
T cd09236 78 ASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDS---HEAN----PKLYTQAAEYEGYLKQAGASD 150 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCc---HHHH----HHHHHHHHHHHHHHHHHHhhH
Confidence 455666666777888888888888877787777776555433321111 1122 244555566777888888889
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHH---HHHHHHHHHHHHhhhhcccCCC
Q 024197 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLV---EEKDKKVKELEENIAAVSFTAN 218 (271)
Q Consensus 142 ~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eL---ee~~~kle~aq~ELsAwkFTpd 218 (271)
..+..++..-+.-|.-|.....+|.... |++ +...+.|.+.-.+.+||..+ ...+.+-...-.+|..- -..+
T Consensus 151 ~~v~~k~~~~~~~l~lL~~~~~~l~~~~-Ps~---~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k-~~~D 225 (353)
T cd09236 151 ELVRRKLDEWEDLIQILTGDERDLENFV-PSS---RRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTK-ARAD 225 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhC-CCC---CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 9999999888888888877777775553 543 23334678888888888544 44444444444444221 1222
Q ss_pred chhHHHHHHHHHhHHHH---------------HHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 219 SKMGKALMAKCKTLQEE---------------NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 219 S~~GKrLmaKCR~LqeE---------------NEELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
...+ .||.-...+... -+||++- ..-...|+..+..|.....+|+.++
T Consensus 226 DI~~-~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~kf--~~~~~~l~~~~~~Q~~ll~~i~~~n 288 (353)
T cd09236 226 DIRP-EILREAARLEREYPATEVAPAHFEDLFDKRLAKY--DKDLDAVSEEAQEQEEILQQIEVAN 288 (353)
T ss_pred CchH-HHHHHHHhhhcccccccccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 233322211111 0245442 2334666667777777777776554
No 72
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.46 E-value=74 Score=33.34 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=37.6
Q ss_pred HHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHH
Q 024197 175 QARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQE 234 (271)
Q Consensus 175 qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~Lqe 234 (271)
.+-.+|.||..|+ .+|..-++....++..++.+|...+= -|+.+.|.|..
T Consensus 384 k~~~lL~d~e~ni--~kL~~~v~~s~~rl~~L~~qWe~~R~--------pL~~e~r~lk~ 433 (594)
T PF05667_consen 384 KTVELLPDAEENI--AKLQALVEASEQRLVELAQQWEKHRA--------PLIEEYRRLKE 433 (594)
T ss_pred HHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHH
Confidence 3446789999998 89999999999999999988875542 35555555553
No 73
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.19 E-value=42 Score=36.30 Aligned_cols=115 Identities=21% Similarity=0.340 Sum_probs=76.8
Q ss_pred hHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 024197 123 LKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK 202 (271)
Q Consensus 123 Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~k 202 (271)
.......+++++....-=-.-+-+.|+.-.+++..++.+|++. ..-+..|+.+|...++.
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~--------------------E~~L~eLq~eL~~~keS 646 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKES--------------------EQKLEELQSELESAKES 646 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH
Confidence 3444445555665555444556677777777777777776555 23456777778877777
Q ss_pred HHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHh
Q 024197 203 VKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267 (271)
Q Consensus 203 le~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk 267 (271)
...+..+|.+-+..-.+ |-.++..++.|+.+|- .+|..|+.+|..-|...+|+-.
T Consensus 647 ~s~~E~ql~~~~e~~e~-----le~~~~~~e~E~~~l~-----~Ki~~Le~Ele~er~~~~e~~~ 701 (769)
T PF05911_consen 647 NSLAETQLKAMKESYES-----LETRLKDLEAEAEELQ-----SKISSLEEELEKERALSEELEA 701 (769)
T ss_pred HHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHhcchhhhh
Confidence 77777777777655554 6667777777888776 5667788888777777666543
No 74
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=80.46 E-value=3.3 Score=41.48 Aligned_cols=175 Identities=14% Similarity=0.166 Sum_probs=28.2
Q ss_pred CCCchhHHHHhhHHHH-----HhchhhhhhhHHHHHHHHHHHHHHHHhh-hcccCCC-------CCCCCChhhhHHHHHh
Q 024197 56 APGVATGMILSLRESL-----QNCKDTLATCQLELEAAKSEIQKWHSSF-QNELFIP-------PGTSPEPRLVINYLQT 122 (271)
Q Consensus 56 ~~~~~t~~il~lr~~l-----~~~~~~~~~~~~~l~~a~~ei~kW~~~f-q~e~~i~-------a~~~~~~~l~~~~l~~ 122 (271)
-++|--|.+|+|+.-- ...++.+.++...++.-+.+|....+.+ +.-+-++ +.....|..+. .
T Consensus 60 l~dikd~s~l~l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~ 135 (424)
T PF03915_consen 60 LSDIKDGSVLSLNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSS----A 135 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCeeEEEecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc----c
Confidence 3688888999988655 3567777888878888888887777665 3311110 11111111000 0
Q ss_pred hHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 024197 123 LKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK 202 (271)
Q Consensus 123 Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~k 202 (271)
.. -..... ....+.-+|++.++..|.-||+.+....... ...|..++.+
T Consensus 136 ~~--~~~~~~-------------~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~---------~~~i~~i~~k------- 184 (424)
T PF03915_consen 136 PS--SSSSPQ-------------STSKSDLKEVQSLRRELAVLRQLYSEFQSEV---------KESISSIREK------- 184 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc--cccCcC-------------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-------
Confidence 00 000000 0111117788889988888888876533222 2222333333
Q ss_pred HHHHHHhhhhcccCCCc-------------hhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHh
Q 024197 203 VKELEENIAAVSFTANS-------------KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKS 267 (271)
Q Consensus 203 le~aq~ELsAwkFTpdS-------------~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk 267 (271)
+...++ .+.+...++ .....|..|..-||.=.|+|.+-+..-++-+....+....+....+.+
T Consensus 185 i~~~k~--~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~ 260 (424)
T PF03915_consen 185 IKKVKS--ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASK 260 (424)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHH--hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHH
Confidence 222222 222222222 233567777888888888888888777776666665555444444433
No 75
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.92 E-value=36 Score=37.46 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=45.4
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChh-----HHHHHHHHHHHHHHHHHHHHHHH
Q 024197 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPA-----IHEEFRRLKNLVEEKDKKVKELE 207 (271)
Q Consensus 133 Ql~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPA-----VNlef~rLr~eLee~~~kle~aq 207 (271)
.+.+-..|.+=+..-+...+++++.+...+... +++...+-.+---|| |.-..+.|.++++.-.+.++..-
T Consensus 800 ~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~----a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~lt 875 (970)
T KOG0946|consen 800 NLSEESTRLQELQSELTQLKEQIQTLLERTSAA----ADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELT 875 (970)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHh
Confidence 366666777666666777777766655544433 222111111111111 22233446666666667777777
Q ss_pred HhhhhcccCCCch
Q 024197 208 ENIAAVSFTANSK 220 (271)
Q Consensus 208 ~ELsAwkFTpdS~ 220 (271)
+.+++..-+.+|.
T Consensus 876 Ek~~sl~~qadse 888 (970)
T KOG0946|consen 876 EKISSLEAQADSE 888 (970)
T ss_pred hhhhhHHHhhcch
Confidence 7777777666653
No 76
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=79.90 E-value=54 Score=30.85 Aligned_cols=191 Identities=18% Similarity=0.242 Sum_probs=106.8
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHH
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEA 142 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~ 142 (271)
.+-.|.+..++|...|..|+..|..-..+..+-+..|.....- .|.+..+. ..|++-=.+++..|..+..=-.
T Consensus 78 ~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~----~~~S~~~~---~~l~~~~~k~~~~L~~A~~sD~ 150 (342)
T cd08915 78 SFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWR----RPSSDEAA---KELYEKVTKLRGYLEQASNSDN 150 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCC----CCChHHHH---HHHHHHHHHHHHHHHHHHhhhH
Confidence 3445566667788888888888888888887777655443221 11111111 2445555667777778888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHH---HHHHHHHHHHhhhhcccCCCc
Q 024197 143 AFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE---KDKKVKELEENIAAVSFTANS 219 (271)
Q Consensus 143 vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee---~~~kle~aq~ELsAwkFTpdS 219 (271)
.+...+..-+.-+.-+..-..+|... -| .+....+|.+...+..||..|.+ .+.+-...-++|... -..+.
T Consensus 151 ~l~~~~~~~~~~l~lL~~~~~~l~~~-~P----s~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~-~~~dd 224 (342)
T cd08915 151 EVLQCYESIDPNLVLLCGGYKELKAF-IP----SPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIK-SRNND 224 (342)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHh-CC----CccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcC
Confidence 88777777666666665555555444 24 12224456777777777765543 344444444455222 12222
Q ss_pred hhHHHHHHHHHhHH----HHH--HHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 220 KMGKALMAKCKTLQ----EEN--DEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 220 ~~GKrLmaKCR~Lq----eEN--EELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
.+ ..||.--+... +.. +||++ =..-+..++..+..|.....+|+.++
T Consensus 225 I~-~~ll~~~~~~~~~~~e~lf~~eL~k--f~~~~~~i~~~~~~Q~~ll~~i~~~~ 277 (342)
T cd08915 225 IL-PKLITEYKKNGTTEFEDLFEEHLKK--FDKDLTYVEKTKKKQIELIKEIDAAN 277 (342)
T ss_pred Cc-HHHHHHhhccccchhHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 33443333221 111 24443 22344667777777777777777654
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.74 E-value=1.1e+02 Score=35.40 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (271)
Q Consensus 186 Nlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eEL 265 (271)
+-++..+++.+......+++++.+|...-+.+++-.-.++-++=..|++.. . .+-+|...|+..+...+..++.|
T Consensus 1019 ~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l---~--~~~~~~~~~~~~~~~re~EIe~L 1093 (1486)
T PRK04863 1019 NQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARL---S--ANRSRRNQLEKQLTFCEAEMDNL 1093 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHH---H--HhHHHHHHHHHHHHHHHHHHHHH
Confidence 334466677777888888888888888888888877777766644444332 2 23355566666666666655555
Q ss_pred Hhh
Q 024197 266 KSQ 268 (271)
Q Consensus 266 rk~ 268 (271)
.+.
T Consensus 1094 ~kk 1096 (1486)
T PRK04863 1094 TKK 1096 (1486)
T ss_pred HHH
Confidence 543
No 78
>PRK02224 chromosome segregation protein; Provisional
Probab=79.71 E-value=85 Score=32.97 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=11.2
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHH
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEI 92 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei 92 (271)
.+++.+......++++..+++.++..+
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~~~~~~~ 498 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERL 498 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 79
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.50 E-value=11 Score=34.21 Aligned_cols=17 Identities=35% Similarity=0.390 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024197 191 RLKNLVEEKDKKVKELE 207 (271)
Q Consensus 191 rLr~eLee~~~kle~aq 207 (271)
+|+.++...+++++.++
T Consensus 143 ~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 143 KLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334443333333333
No 80
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.36 E-value=58 Score=36.51 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q 024197 81 CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKS 160 (271)
Q Consensus 81 ~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~s 160 (271)
++..|+.+++.+..-....++-.|.-+.-++.|--+ ..--..+|.+++.+ +.|-..+..+|.||-+++-
T Consensus 901 lr~sleq~nstl~ll~~~~~~~Ey~~~~~ps~~~pl-------~~RA~~~K~~~eda----egL~~tle~re~eikeLkk 969 (1243)
T KOG0971|consen 901 LRQSLEQLNSTLNLLATAMQEGEYDAERPPSKPPPL-------ELRAAALKAEIEDA----EGLGLTLEDRETEIKELKK 969 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCCCcH-------HHHHHHHHHHHHhh----hhhhhhHHhhHHHHHHHHH
Confidence 445566667777777766777666533222222222 22234456666554 4677889999999999998
Q ss_pred HHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 161 AVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 161 qi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
+. -+|.. .-|-+++|--|...-.+..-..=...++..+.++++++..|.+..--=+ -+=-.|-++++.|+.||.||.
T Consensus 970 ~a-Kmkqe-elSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efe-etmdaLq~di~~lEsek~elK 1046 (1243)
T KOG0971|consen 970 SA-KMKQE-ELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFE-ETMDALQADIDQLESEKAELK 1046 (1243)
T ss_pred HH-HhhHH-HHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHH
Confidence 83 44444 6677888876665555533333334444455555555544433211000 112347889999999999998
Q ss_pred hhh
Q 024197 241 RQN 243 (271)
Q Consensus 241 r~l 243 (271)
-.+
T Consensus 1047 qrl 1049 (1243)
T KOG0971|consen 1047 QRL 1049 (1243)
T ss_pred HHh
Confidence 664
No 81
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.30 E-value=0.6 Score=49.75 Aligned_cols=40 Identities=20% Similarity=0.489 Sum_probs=0.0
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhccc
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNEL 103 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~ 103 (271)
+-.||+.|..=......++..|..++.+|..|+..|..+.
T Consensus 273 ~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~ 312 (859)
T PF01576_consen 273 LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA 312 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4467888877777788888999999999999998777663
No 82
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.07 E-value=55 Score=30.44 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 024197 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSF 215 (271)
Q Consensus 186 Nlef~rLr~eLee~~~kle~aq~ELsAwkF 215 (271)
...+..++.++...+.++..++..|.....
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i 274 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARDRLQRLII 274 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcEE
Confidence 345677778888888888888877765433
No 83
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.62 E-value=90 Score=32.67 Aligned_cols=47 Identities=26% Similarity=0.226 Sum_probs=26.9
Q ss_pred hHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q 024197 116 VINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAV 162 (271)
Q Consensus 116 ~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi 162 (271)
+......+..+.+.++........+-.-...||..+|++|..+....
T Consensus 190 L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 190 LKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555655555555555555566666666666665555
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.42 E-value=86 Score=32.32 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=30.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHH
Q 024197 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDE 238 (271)
Q Consensus 182 DPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEE 238 (271)
+|.....+..++.++.+.+.++..+...|+.. |+...-+.|-.+...+..+..+
T Consensus 386 ~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~---~~~e~i~~l~e~l~~l~~~l~~ 439 (650)
T TIGR03185 386 KRELQDAKSQLLKELRELEEELAEVDKKISTI---PSEEQIAQLLEELGEAQNELFR 439 (650)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHH
Confidence 44444556777777777777777777777765 3322334444444444444333
No 85
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.29 E-value=92 Score=32.60 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHhhhhhcccc--hhhhHHHHHHHHHHH
Q 024197 227 AKCKTLQEENDEIGRQNEEGET--HQLSVKLALQKSLNA 263 (271)
Q Consensus 227 aKCR~LqeENEELGr~lsegri--a~LE~eLAlqK~~~e 263 (271)
.++..|..|.+.+.+.+.+-+. +.|+.+|+..+.++.
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~ 409 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNR 409 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3455566665555554433332 456777766666665
No 86
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.81 E-value=1.3e+02 Score=34.06 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=66.5
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhh---hChhHHHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL---LDPAIHEEFRRLK 193 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~L---lDPAVNlef~rLr 193 (271)
.+.....+..-+.|++.+...+.-=..+...+--+..++.++++.++.+.+....-.+-+=+-| ++|-.-.-.+.|.
T Consensus 712 e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn 791 (1200)
T KOG0964|consen 712 ENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLN 791 (1200)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhh
Confidence 4455555666667777777777777778888889999999999999988776543333333333 6788888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 024197 194 NLVEEKDKKVKELEE 208 (271)
Q Consensus 194 ~eLee~~~kle~aq~ 208 (271)
.+|.+...++.....
T Consensus 792 ~eI~~l~~kl~~~~~ 806 (1200)
T KOG0964|consen 792 KEINKLSVKLRALRE 806 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888886653
No 87
>PRK11519 tyrosine kinase; Provisional
Probab=77.63 E-value=59 Score=34.04 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=59.5
Q ss_pred HHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 024197 69 ESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF 148 (271)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rL 148 (271)
.+++--+..|..++.+|+.|...++.++. ....+... .+-.. .++.+ ..++.|+.+.+.++.-+..++
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~---~~~~vd~~--~ea~~---~l~~~----~~l~~ql~~l~~~~~~l~~~y 334 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQ---DKDSVDLP--LEAKA---VLDSM----VNIDAQLNELTFKEAEISKLY 334 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCch--HHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 34555667788888999999999998883 33333211 11111 22222 345556666555555544333
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHH
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~a 206 (271)
...-=.++.+..+++.|.....-- -.++.-=|..-..|.+|..+.+-.+.-++.+
T Consensus 335 ~~~hP~v~~l~~~~~~L~~~~~~l---~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~l 389 (719)
T PRK11519 335 TKEHPAYRTLLEKRKALEDEKAKL---NGRVTAMPKTQQEIVRLTRDVESGQQVYMQL 389 (719)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHH---HHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222233332222222111000 0112223455566777777776666555443
No 88
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=76.79 E-value=57 Score=29.35 Aligned_cols=107 Identities=12% Similarity=0.171 Sum_probs=45.5
Q ss_pred chhHHHHhhHHHHHhc-------------hhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHh
Q 024197 59 VATGMILSLRESLQNC-------------KDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKS 125 (271)
Q Consensus 59 ~~t~~il~lr~~l~~~-------------~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~ 125 (271)
.-+..|=.|+.+|... ...|.+.+.+++.++.+|.+-+.. ..+..+...+-...=+...|.....
T Consensus 15 ~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~--~~~~~~~~~~~s~~eLeq~l~~~~~ 92 (240)
T PF12795_consen 15 EQKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ--DAPSKEILANLSLEELEQRLSQEQA 92 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc--ccccccCcccCCHHHHHHHHHHHHH
Confidence 3444555555555433 334555556666666666655533 2233333333333333333333333
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024197 126 SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKA 167 (271)
Q Consensus 126 sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~ 167 (271)
-=..++.++.....+=..+..+...-.+.|-+....+.++..
T Consensus 93 ~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~ 134 (240)
T PF12795_consen 93 QLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRN 134 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333333334444444444444444433
No 89
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.35 E-value=42 Score=35.67 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=56.5
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 024197 137 AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFT 216 (271)
Q Consensus 137 ~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFT 216 (271)
..+.+.++..++...+.-+..+..++++|+. ++.+|+.++++.+.+|+.+..++.
T Consensus 413 e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~--------------------~~ee~k~eie~L~~~l~~~~r~~~----- 467 (652)
T COG2433 413 ERREITVYEKRIKKLEETVERLEEENSELKR--------------------ELEELKREIEKLESELERFRREVR----- 467 (652)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444567777777777777777777777743 345666777777777777766654
Q ss_pred CCchhHHHHHHHHHhHHHHHHHHhhhhhc--ccchhhhHHHHHHH
Q 024197 217 ANSKMGKALMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQK 259 (271)
Q Consensus 217 pdS~~GKrLmaKCR~LqeENEELGr~lse--gria~LE~eLAlqK 259 (271)
...+ .=-+.+.++.+++.|-+.+.+ -++-+|+.+|+..+
T Consensus 468 --~~~~--~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 468 --DKVR--KDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred --HHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 122455566666666655543 34556666666655
No 90
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=75.88 E-value=16 Score=27.58 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=38.1
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q 024197 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKS 160 (271)
Q Consensus 115 l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~s 160 (271)
.+..+|+.++++--.+..+|+++-.|-.-|...|..++.+|-++++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567788999999999999999999988888888888888877654
No 91
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.80 E-value=1.2e+02 Score=32.82 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=37.3
Q ss_pred hhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
+..=+.-||..|+.....|.++|..|..+..+|.+-...++.
T Consensus 126 ~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~ 167 (775)
T PF10174_consen 126 LQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQS 167 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577789999999999999999999999999999988864
No 92
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=75.80 E-value=35 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhc
Q 024197 126 SEEMLKEQLEKAKKKEAAFIVT-FAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 126 sE~~LkeQl~e~krRE~vlv~r-LAtKEQEiqEl~sqi~dlK~~~ 169 (271)
+.+.|+.|| .+..-|..+|+| |+..|.+...+..+++-+|...
T Consensus 2 ~~aeLR~qL-qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 2 DSAELRRQL-QFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999 788888888875 8999999999999999998864
No 93
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.56 E-value=40 Score=33.72 Aligned_cols=90 Identities=29% Similarity=0.448 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q 024197 150 KREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKC 229 (271)
Q Consensus 150 tKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKC 229 (271)
..++|.++++++-+-|+.+. ..- --+|.+++++....+.-+..+.+|=.-..-.=|+ |+.-|
T Consensus 96 e~q~e~~qL~~qnqkL~nqL-----------~~~--~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~-----l~~e~ 157 (401)
T PF06785_consen 96 ERQQESEQLQSQNQKLKNQL-----------FHV--REVFMKTKGDIQHLEGLIRHLREENQCLQLQLDA-----LQQEC 157 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHH-----------HHH--HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHH
Confidence 34577788888877776652 211 2266677766666666655555554443333333 78899
Q ss_pred HhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197 230 KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (271)
Q Consensus 230 R~LqeENEELGr~lsegria~LE~eLAlqK~~~eEL 265 (271)
+.-.+|+.+|-|.+++. +|++...++|-
T Consensus 158 ~Ekeeesq~LnrELaE~--------layqq~L~~ey 185 (401)
T PF06785_consen 158 GEKEEESQTLNRELAEA--------LAYQQELNDEY 185 (401)
T ss_pred hHhHHHHHHHHHHHHHH--------HHHHHHHHHHh
Confidence 99999999998877664 56666555553
No 94
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=75.53 E-value=33 Score=30.28 Aligned_cols=92 Identities=25% Similarity=0.381 Sum_probs=45.3
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHH
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFI 145 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv 145 (271)
++|.-|+.|...++.|+...+++...+......+-.- . .|.+| +.++++..++..-..+..++..+.....-+-
T Consensus 26 ~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m--~-~gg~~---f~i~~~~~~~~~r~~l~~~~~~~e~~~a~l~ 99 (158)
T PF09486_consen 26 AQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAM--M-TGGAP---FSIDEYLALRRYRDVLEERVRAAEAELAALR 99 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--H-cCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555443332 1 23333 3466766666666655555554444444444
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 024197 146 VTFAKREQEIAELKSAVR 163 (271)
Q Consensus 146 ~rLAtKEQEiqEl~sqi~ 163 (271)
-.+..++.+|......|.
T Consensus 100 ~~l~~~~~~ia~~~raIa 117 (158)
T PF09486_consen 100 QALRAAEDEIAATRRAIA 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 95
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=75.47 E-value=98 Score=31.45 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=52.4
Q ss_pred HHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhH-----HHHHHHHHHHHhHHHHHH
Q 024197 71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSE-----EMLKEQLEKAKKKEAAFI 145 (271)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE-----~~LkeQl~e~krRE~vlv 145 (271)
+..+.....+|+.+|+.+..++..|+..+.. ...+...... ...+|..|+.-= .++.+.. ..++....+-
T Consensus 206 ~~~~~~~~~~~~~~leeae~~l~~L~~e~~~---~k~Le~kL~~-a~~~l~~Lq~El~~~~~~~l~~~~-~~~~~~~~~~ 280 (522)
T PF05701_consen 206 AAEREQDAEEWEKELEEAEEELEELKEELEA---AKDLESKLAE-ASAELESLQAELEAAKESKLEEEA-EAKEKSSELQ 280 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhH-HhhhhhhhHH
Confidence 3345567778999999999999999977622 2222111111 112222222110 0111111 2445566667
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHh
Q 024197 146 VTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 146 ~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+.|.....|+.+.+..|+..+.-
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E 303 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEE 303 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888887766543
No 96
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.66 E-value=1.1e+02 Score=31.76 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=22.5
Q ss_pred HHhchhhhhhhHHHHHHHHHHHHHHHH
Q 024197 71 LQNCKDTLATCQLELEAAKSEIQKWHS 97 (271)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~ei~kW~~ 97 (271)
.+--...|..++.+|++|..+++.++.
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788999999999999999993
No 97
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.64 E-value=94 Score=31.72 Aligned_cols=172 Identities=12% Similarity=0.193 Sum_probs=97.7
Q ss_pred CCchhHHHHhhHHHHHhchhhhhhhHHH----------HHHHHHHHHHHHHhhhc-ccCCCCCCCCChhhhHHHHHhhHh
Q 024197 57 PGVATGMILSLRESLQNCKDTLATCQLE----------LEAAKSEIQKWHSSFQN-ELFIPPGTSPEPRLVINYLQTLKS 125 (271)
Q Consensus 57 ~~~~t~~il~lr~~l~~~~~~~~~~~~~----------l~~a~~ei~kW~~~fq~-e~~i~a~~~~~~~l~~~~l~~Lk~ 125 (271)
....+..+-.+++..+.|...|..++.. ......+|....+.|.. +.-+.....++. .+++
T Consensus 312 ~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ys--------el~e 383 (569)
T PRK04778 312 SDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYS--------ELQE 383 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--------HHHH
Confidence 5567888899999999999988888877 66777777777766663 333434444433 2344
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHH
Q 024197 126 SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKE 205 (271)
Q Consensus 126 sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~ 205 (271)
.-+.+.+++.+......-+.-.|....++..+.+..|..|+.....-...++. .-=|.|-..|..+ +...+.+++.
T Consensus 384 ~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k-~~lpgip~~y~~~---~~~~~~~i~~ 459 (569)
T PRK04778 384 ELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEK-SNLPGLPEDYLEM---FFEVSDEIEA 459 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCcHHHHHH---HHHHHHHHHH
Confidence 44555556666666666666666666666666666666665543211111111 1124444444433 3455667777
Q ss_pred HHHhhhhcccCCCchhH--HHHHHHHHhHHHHHHHHh
Q 024197 206 LEENIAAVSFTANSKMG--KALMAKCKTLQEENDEIG 240 (271)
Q Consensus 206 aq~ELsAwkFTpdS~~G--KrLmaKCR~LqeENEELG 240 (271)
+..+|..-....+.... ...-.+...|..+-++|=
T Consensus 460 l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~ 496 (569)
T PRK04778 460 LAEELEEKPINMEAVNRLLEEATEDVETLEEETEELV 496 (569)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777775444444331 233344444444444443
No 98
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=74.24 E-value=48 Score=35.57 Aligned_cols=110 Identities=22% Similarity=0.280 Sum_probs=65.3
Q ss_pred HHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH
Q 024197 120 LQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (271)
Q Consensus 120 l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~ 199 (271)
+..|+.+...+.........+++.|......+.+|+--+...+...+.- -+| +.-.+..|+.+++..
T Consensus 512 i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~-----------~~e--~~~~~~~Lq~~~ek~ 578 (698)
T KOG0978|consen 512 ILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK-----------AQE--AKQSLEDLQIELEKS 578 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH-----------HHH--HHHHHHHHHHHHHHH
Confidence 3444445555554455555555555555555555554444444333221 222 334557788888888
Q ss_pred HHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhccc
Q 024197 200 DKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE 247 (271)
Q Consensus 200 ~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegr 247 (271)
..++++++..+++..- .=..+.-+-+.|++|++.|.+.+..++
T Consensus 579 ~~~le~i~~~~~e~~~-----ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 579 EAKLEQIQEQYAELEL-----ELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887766521 113355677888999998888886654
No 99
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=73.85 E-value=1.1e+02 Score=31.05 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=52.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhc----ccCCCCCCCCChhhhHHHHHhhH----hhHHHHHHHHHHHHhHHHHHHH
Q 024197 75 KDTLATCQLELEAAKSEIQKWHSSFQN----ELFIPPGTSPEPRLVINYLQTLK----SSEEMLKEQLEKAKKKEAAFIV 146 (271)
Q Consensus 75 ~~~~~~~~~~l~~a~~ei~kW~~~fq~----e~~i~a~~~~~~~l~~~~l~~Lk----~sE~~LkeQl~e~krRE~vlv~ 146 (271)
.+.++-.+.+|..+..|+.+-+..++. ...++.-...--++..+.+.+|+ ..+..++.+...+......|+.
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~ 187 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLK 187 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 345666666666666666544433322 23333333333344444445544 4555566666677788889999
Q ss_pred HHhhHHHHHHHHHHHHH
Q 024197 147 TFAKREQEIAELKSAVR 163 (271)
Q Consensus 147 rLAtKEQEiqEl~sqi~ 163 (271)
|+..+|.+.+++.....
T Consensus 188 rtl~~e~~~~~L~~~~~ 204 (511)
T PF09787_consen 188 RTLKKEIERQELEERPK 204 (511)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999977777765443
No 100
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.05 E-value=94 Score=30.11 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=50.1
Q ss_pred CCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHH
Q 024197 57 PGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQL 134 (271)
Q Consensus 57 ~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl 134 (271)
+--..++|=-+++||.+-++.|+.++.+++.++..|......+.+ .+.+..+ .+.|++..+.+..+++.+..
T Consensus 69 ~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~-----~~~~~~~-~~~n~~~~~~~~t~~la~~t 140 (301)
T PF06120_consen 69 STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE-----KGITENG-YIINHLMSQADATRKLAEAT 140 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCcch-HHHHHHHHHHHHHHHHHHHH
Confidence 334556889999999999999999999999999999766533222 2233333 34577777777666665543
No 101
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=72.45 E-value=50 Score=26.74 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 154 EIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 154 EiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
..+++..++.+++........ ||.....+.++..+++..+.+.+-.++=++|+
T Consensus 32 ~n~el~~el~~l~~~~~~~~~-------~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~l 84 (106)
T PF05837_consen 32 RNQELAQELLELAEKQKSQRE-------DEELSEKLEKLEKELKKSRQRWRVMKNVFQAL 84 (106)
T ss_pred HHHHHHHHHHHHHHHhhhhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666555443222 99999999999999999999999999888664
No 102
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.43 E-value=2e+02 Score=33.56 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024197 192 LKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 192 Lr~eLee~~~kle~aq~ELs 211 (271)
|...+.++..++++.+.++.
T Consensus 440 Le~~LenF~aklee~e~qL~ 459 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELL 459 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.37 E-value=51 Score=29.96 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=41.3
Q ss_pred HHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHH
Q 024197 177 RRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLA 256 (271)
Q Consensus 177 R~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLA 256 (271)
+.+.-.|.+...+..|.+++.+.+.++..+.++++.-+=.=+... ...=.....|.+||++|-.++ +.+..++.
T Consensus 83 ~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~L~~~n~~L~~~l-----~~~~~~~~ 156 (206)
T PRK10884 83 KQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV-AQSDSVINGLKEENQKLKNQL-----IVAQKKVD 156 (206)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 344455666666666666666666666666655331100000000 011122333777777776555 33444554
Q ss_pred HHHHHHHHHH
Q 024197 257 LQKSLNAELK 266 (271)
Q Consensus 257 lqK~~~eELr 266 (271)
.++..++.++
T Consensus 157 ~l~~~~~~~~ 166 (206)
T PRK10884 157 AANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHH
Confidence 4444454444
No 104
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=72.32 E-value=21 Score=29.67 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhH
Q 024197 153 QEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTL 232 (271)
Q Consensus 153 QEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~L 232 (271)
+|-..++++..-||.+ .+|--.+. ..|+..|...+..++.++.|+...+|--+ .|..|.-.|
T Consensus 5 ~eYsKLraQ~~vLKKa-----------VieEQ~k~--~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~-----QL~kRV~~L 66 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKA-----------VIEEQAKN--AELKEQLKEKEQALRKLEQENDSLTFRNQ-----QLTKRVEVL 66 (102)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 4566666666666544 44333332 58999999999999999999999999755 499999999
Q ss_pred HHHHHHHhhh
Q 024197 233 QEENDEIGRQ 242 (271)
Q Consensus 233 qeENEELGr~ 242 (271)
|+|.+..+..
T Consensus 67 Q~El~~~~~~ 76 (102)
T PF10205_consen 67 QEELEESEQK 76 (102)
T ss_pred HHHHHHhhcc
Confidence 9999976543
No 105
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=71.99 E-value=94 Score=29.65 Aligned_cols=193 Identities=17% Similarity=0.234 Sum_probs=118.1
Q ss_pred hhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHh
Q 024197 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKK 139 (271)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~kr 139 (271)
-..+|-.|.+..++|...|..|..-|..=..+-.+-+..|.. .+- .+|-..+. ..|+.-=.+++..|..+..
T Consensus 74 l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~-~Wt---r~pS~~~~----~~l~~~~~kyr~~L~~A~~ 145 (339)
T cd09235 74 IDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKE-RWT---RTPSNKLT----KPLRAEGSKYRTILDNAVQ 145 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCC-cCC---CCChHHHh----HHHHHHHHHHHHHHHHHHh
Confidence 345677778888888888888888888888888888866654 221 22222222 2456666677778888888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhcccC
Q 024197 140 KEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLK---NLVEEKDKKVKELEENIAAVSFT 216 (271)
Q Consensus 140 RE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr---~eLee~~~kle~aq~ELsAwkFT 216 (271)
=...+..++..-+--|.-|.....+|.... |++.. ...|.+...+..|| .+|...+.+-+....+|..-
T Consensus 146 sD~~v~~k~~~~~~~l~lLs~~~~~l~~~l-Pss~~----~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~--- 217 (339)
T cd09235 146 ADKIVREKYESHREGIELLSKPEEELANAI-PSASP----AKTLQGSEAVQELRQLMEQVETIKAEREVIESELKSA--- 217 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHhC-CCCCC----CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 888888888887777777766656664443 43311 12345555556665 45556666666667777554
Q ss_pred CCchhHHHHHHHH--HhHHH-H---HHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 217 ANSKMGKALMAKC--KTLQE-E---NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 217 pdS~~GKrLmaKC--R~Lqe-E---NEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
-+....+ ||+-. +.... | -+||++.-. .-...++..+..|.....+|+.++.
T Consensus 218 ~dDI~~~-ll~~~~~~~~~~~e~l~~~eL~k~f~-~~~~~i~~~~~~Q~~ll~~i~~~n~ 275 (339)
T cd09235 218 TFDMKSK-FLSALAQDGAINEEAISVEELDRVYG-PLQKQVQESLSRQESLLANIQVAHQ 275 (339)
T ss_pred ccccHHH-HHHHHHhcCCccHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333 33211 11111 1 236655221 2446777778888888888876653
No 106
>PRK11281 hypothetical protein; Provisional
Probab=71.83 E-value=1.4e+02 Score=33.77 Aligned_cols=134 Identities=11% Similarity=0.177 Sum_probs=72.5
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchH-HHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLM-QARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 134 l~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~-qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
..+.+.|=..|-.+++.-.+++.+....+..+|....++.. ......+ +..--.+..+...+.+.+..+..++.+|.+
T Consensus 75 i~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl-~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~ 153 (1113)
T PRK11281 75 IDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVS 153 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566678889999999999999999988865444321 1111111 122222233334444444444444444444
Q ss_pred cccCCCchhHHHHHHHHH-hHHHHHHHHhh------hhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 213 VSFTANSKMGKALMAKCK-TLQEENDEIGR------QNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 213 wkFTpdS~~GKrLmaKCR-~LqeENEELGr------~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
.+--|.. .+..|+..+ .+++=+..|.. .+++.+...|.+|+++.+..++-.+....
T Consensus 154 ~qT~PER--AQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 154 LQTQPER--AQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred hhcchHH--HHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333333 222333322 33333334432 23334567788999998888877776543
No 107
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.81 E-value=48 Score=28.24 Aligned_cols=53 Identities=28% Similarity=0.450 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 185 VNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
+...+..|+.++.+.+..+..++.+|+...=+|-. --|......|..|+++|.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~---~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTN---EELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHH
Confidence 35556677777777777777777777766444422 225555555555555554
No 108
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=71.51 E-value=95 Score=29.53 Aligned_cols=173 Identities=22% Similarity=0.324 Sum_probs=84.5
Q ss_pred HHHhhHHHHHhc---hhhhhh----hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197 63 MILSLRESLQNC---KDTLAT----CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (271)
Q Consensus 63 ~il~lr~~l~~~---~~~~~~----~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~ 135 (271)
+-+..|+.||.- ...+++ ....|+.|+++++.|.+.+... |..|...=+.|+..+.
T Consensus 36 t~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~-----------------l~~Lq~ql~~l~akI~ 98 (258)
T PF15397_consen 36 TALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESK-----------------LSKLQQQLEQLDAKIQ 98 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhH-----------------HHHHHHHHHHHHHHHH
Confidence 445566666542 222222 2456999999999999666543 2222222222222221
Q ss_pred HHHhHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 024197 136 KAKKKEAAFIVTFAKRE-----QEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK-DKKVKELEEN 209 (271)
Q Consensus 136 e~krRE~vlv~rLAtKE-----QEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~-~~kle~aq~E 209 (271)
. ...|=-++.+.-.+| =.|.++..+|..+|..+..-.. .++.++...+..+... ..+-+.....
T Consensus 99 k-~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEld---------el~e~~~~el~~l~~~~q~k~~~il~~ 168 (258)
T PF15397_consen 99 K-TQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELD---------ELNEMRQMELASLSRKIQEKKEEILSS 168 (258)
T ss_pred H-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122333333333222 2555666666666666542211 2333333333322221 1122222233
Q ss_pred hhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhc--ccchhhhHHHHHHHHHHHHHHhhh
Q 024197 210 IAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 210 LsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lse--gria~LE~eLAlqK~~~eELrk~~ 269 (271)
+..-.+.|-.+ .|+.+. .+|.-|.+.+.. .-|.+|+.++..++..++.|+..-
T Consensus 169 ~~~k~~~~~~~---~l~~~~----~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 169 AAEKTQSPMQP---ALLQRT----LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHhhchH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444443 343333 344444444433 346888888999999888887654
No 109
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=71.33 E-value=44 Score=36.22 Aligned_cols=140 Identities=21% Similarity=0.276 Sum_probs=84.4
Q ss_pred HHHHhhHHHHHhchhhhhhhHH-HHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhH
Q 024197 62 GMILSLRESLQNCKDTLATCQL-ELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK 140 (271)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~-~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krR 140 (271)
.|+-.|+..|..+-..|..+.. +|- ..-.+||+..= . +..|.+.+|.--. -.++|
T Consensus 369 ~~~~~l~~~i~~~L~~l~~~~~~~l~--~~R~~kfr~~G---~-~~e~~~~~~~~~~------------------~~~~~ 424 (762)
T PLN03229 369 WTSQQIKIAINENMDELGKMDTEELL--KHRMLKFRKIG---G-FQEGVPVDPERKV------------------NMKKR 424 (762)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHhC---C-cccCCCCChhhhc------------------ccchh
Confidence 3566777777666666555433 222 23456777332 2 2366677774333 34566
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHH----------HHHHHHHHHHhh
Q 024197 141 EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE----------KDKKVKELEENI 210 (271)
Q Consensus 141 E~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee----------~~~kle~aq~EL 210 (271)
|... .--.-+|-|+..++-+|...|... +.+.+|+.+..|.+|+.+++. .+.++.-++.|+
T Consensus 425 ~~~~-~~~~~Le~elekLk~eilKAk~s~--------~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~ 495 (762)
T PLN03229 425 EAVK-TPVRELEGEVEKLKEQILKAKESS--------SKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEF 495 (762)
T ss_pred ccCC-CCCccHHHHHHHHHHHHHhccccc--------CCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 6544 333456667777777766665332 247888888888888888764 467777888777
Q ss_pred hhcccCCCchhHHHHHHHHHhHHHH
Q 024197 211 AAVSFTANSKMGKALMAKCKTLQEE 235 (271)
Q Consensus 211 sAwkFTpdS~~GKrLmaKCR~LqeE 235 (271)
+-.+ ..+..+---|+.|..+|.+|
T Consensus 496 sKa~-~~~~~~~~~L~eK~~kLk~E 519 (762)
T PLN03229 496 SKAN-SQDQLMHPVLMEKIEKLKDE 519 (762)
T ss_pred Hhcc-cccccccHHHHHHHHHHHHH
Confidence 7664 33444445566666666655
No 110
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.86 E-value=1.1e+02 Score=30.05 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=70.9
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHH
Q 024197 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDK 201 (271)
Q Consensus 122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~ 201 (271)
.|......+...+.+...||+.+..+|...=+|.+..+..+++++...+- .+.-+..+..+|.+...
T Consensus 242 ~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~-------------~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 242 QLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ-------------ASEGVSERTRELAEISE 308 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHH
Confidence 34556677888999999999999999988888888888888887665432 12233566677777777
Q ss_pred HHHHHHHhhhhc--ccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 202 KVKELEENIAAV--SFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 202 kle~aq~ELsAw--kFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
++++.+.++..- +-|=.|++ .++=.-+.+|.+|+-+|.
T Consensus 309 eLe~vK~emeerg~~mtD~sPl-v~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 309 ELEQVKQEMEERGSSMTDGSPL-VKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHHHHHhh
Confidence 777777777554 22222322 223344566777777776
No 111
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=70.59 E-value=39 Score=26.36 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 184 AVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
+...++..|..|+...+-....++..++...=+++....+.|...++.|....|.=|.++
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999888888888999999999988888777665
No 112
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=70.50 E-value=22 Score=29.21 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC---Cc---------hhH--HHHHHHHHhHHHHHHHHhhhhhcccchh
Q 024197 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTA---NS---------KMG--KALMAKCKTLQEENDEIGRQNEEGETHQ 250 (271)
Q Consensus 185 VNlef~rLr~eLee~~~kle~aq~ELsAwkFTp---dS---------~~G--KrLmaKCR~LqeENEELGr~lsegria~ 250 (271)
|-.+-.-||..|-+..+..+.+..+|+-.+|-+ +| ++| --|....+.-..+..+|+ |||-+
T Consensus 13 vEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls-----~kv~e 87 (96)
T PF11365_consen 13 VEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS-----GKVME 87 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh-----hHHHH
Confidence 556667899999999999999999999888833 21 112 446666777777777777 56665
Q ss_pred hhH
Q 024197 251 LSV 253 (271)
Q Consensus 251 LE~ 253 (271)
|+-
T Consensus 88 Lq~ 90 (96)
T PF11365_consen 88 LQY 90 (96)
T ss_pred Hhh
Confidence 553
No 113
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.48 E-value=42 Score=29.11 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=11.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+.|+.+.-.++..+...+..++.+
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq 140 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQ 140 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444443
No 114
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.35 E-value=5.6 Score=41.35 Aligned_cols=89 Identities=25% Similarity=0.312 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Q 024197 76 DTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEI 155 (271)
Q Consensus 76 ~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEi 155 (271)
..|+.++.+...-..++..|.+..+..+. +...|.-|...|..|+--...|.+++-...-.=+-+-..+..++.|+
T Consensus 305 ~el~~lq~e~~~Le~el~sW~sl~~~~~~----~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~ 380 (722)
T PF05557_consen 305 EELAELQLENEKLEDELNSWESLLQDIGL----EFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEK 380 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 45566666667777788889876665421 44456778888888887777777766554444444444555666666
Q ss_pred HHHHHHHHHHHHh
Q 024197 156 AELKSAVRDLKAQ 168 (271)
Q Consensus 156 qEl~sqi~dlK~~ 168 (271)
.++...+..++..
T Consensus 381 ~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 381 EQLLKEIEELEAS 393 (722)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555544
No 115
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.14 E-value=1.7e+02 Score=31.78 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHH---HHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHH
Q 024197 150 KREQEIAELKSAVRDL---KAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALM 226 (271)
Q Consensus 150 tKEQEiqEl~sqi~dl---K~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLm 226 (271)
...|++++...++.++ +++...+--+++..--+-+||..|..=-+++++.+..+.+..++++..+=..
T Consensus 204 ~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~--------- 274 (716)
T KOG4593|consen 204 EENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENR--------- 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Confidence 3334444444433333 3333444567777778888999888666777777788888777776543222
Q ss_pred HHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 227 AKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 227 aKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
.-...|++|++-|-+-+ ||...|...+....-.|..|+..+
T Consensus 275 ~tv~~LqeE~e~Lqskl--~~~~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 275 ETVGLLQEELEGLQSKL--GRLEKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred hhhHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22456888888888777 777888888888888888777654
No 116
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.11 E-value=1e+02 Score=29.26 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 187 EEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 187 lef~rLr~eLee~~~kle~aq~ELsA 212 (271)
.++..+|.+|.+.+.+++..+.+|.-
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555543
No 117
>PRK11637 AmiB activator; Provisional
Probab=69.63 E-value=1.1e+02 Score=29.69 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=15.5
Q ss_pred hHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Q 024197 123 LKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELK 159 (271)
Q Consensus 123 Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~ 159 (271)
+...=..+++++.+...+=.-+...|+..+.+|....
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444433
No 118
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.52 E-value=94 Score=29.87 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
|..+..++..+.+++.+.+.+|+..+=.= ...-+++..++.+..++-+..
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~~l~~~I-----~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQELESKI-----EDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444431110 123344444555555554443
No 119
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.46 E-value=2e+02 Score=32.14 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=39.1
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHH
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLK 131 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~Lk 131 (271)
.+...+..++..++..+.+.++-..++++|. ++| + ++.+.||..+..+=+.+...+..|+
T Consensus 729 ~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~---~~e--L-~~~GvD~~~I~~l~~~i~~L~~~l~ 788 (1201)
T PF12128_consen 729 ELDEQIEQIKQEIAAAKQEAKEQLKELEQQY---NQE--L-AGKGVDPERIQQLKQEIEQLEKELK 788 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--H-HhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666777778887 566 5 8889999777655555554444443
No 120
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=68.34 E-value=56 Score=25.64 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=51.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC----hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 141 EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLD----PAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 141 E~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlD----PAVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
....+-.|-.+.++-..+..++..++..++--+.+.-...-. .........++.++...+..+..+..+|..
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888876655555444443 234455667778888888888888877754
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=68.02 E-value=1.8e+02 Score=31.31 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=22.6
Q ss_pred hHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhH
Q 024197 116 VINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR 151 (271)
Q Consensus 116 ~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtK 151 (271)
....++.+++-...++.++.+...++..+...+-..
T Consensus 584 ~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 584 RKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666666666666666666666655555
No 122
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=67.75 E-value=1.1e+02 Score=28.84 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=58.2
Q ss_pred HhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhH--H-HHHHHHH
Q 024197 72 QNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK--E-AAFIVTF 148 (271)
Q Consensus 72 ~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krR--E-~vlv~rL 148 (271)
+--+..+..++.+|+.|...+..|++ .-..+-+. .......+.+..|+.-...++.|+.+.+.+ + |= .+
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~---~~~~~d~~--~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P---~v 244 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQI---KNKVFDPK--AQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNP---QV 244 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC---ch
Confidence 34455667777777788877777773 22222100 012234444555555444444444433210 1 10 01
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL 210 (271)
-....++..+..+|.........+. ...+ |.....|.+|..+.+-.+..++.+-..+
T Consensus 245 ~~l~~~i~~l~~~i~~e~~~i~~~~---~~~l--~~~~~~~~~L~re~~~a~~~y~~~l~r~ 301 (362)
T TIGR01010 245 PSLQARIKSLRKQIDEQRNQLSGGL---GDSL--NEQTADYQRLVLQNELAQQQLKAALTSL 301 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC---CccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333333333333322111110 0112 4444577888888887777776655444
No 123
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=67.41 E-value=12 Score=36.19 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=37.1
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhh
Q 024197 222 GKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 222 GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~ 268 (271)
+..|+.-|.-|..+|++|..++ ..||.||.+.|..+.|+.++
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa-----~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQA-----SELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999999877 67999999999999998764
No 124
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=66.95 E-value=15 Score=32.26 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCCccccccccccchhhhcCCCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhh
Q 024197 26 SGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQ 100 (271)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq 100 (271)
|..--..+|..|+|.|-||++|.. -++|+-.+.-.+-..+.|+-+..+.+-..|-++.|.
T Consensus 31 s~~~~~~~deldEEfD~~ps~~~~---------------~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~alls 90 (156)
T PF08372_consen 31 SHADSAHPDELDEEFDTFPSSRPP---------------DSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLS 90 (156)
T ss_pred cccccCCcchhhhhhccccccccc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444567777788999988743 134555555555566667777777776666665543
No 125
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=66.62 E-value=65 Score=25.76 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHH--HhhhChhHHHHHHHHHHHHHHHHHHH
Q 024197 126 SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR--RLLLDPAIHEEFRRLKNLVEEKDKKV 203 (271)
Q Consensus 126 sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR--~~LlDPAVNlef~rLr~eLee~~~kl 203 (271)
.++..+.+|..+...-.....+|..+.....++..++...-... .+...++ ..++ ..++..|...+..|...+..+
T Consensus 14 ~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g-~~~~~l~~~~~f~-~~l~~~i~~q~~~l~~~~~~~ 91 (141)
T TIGR02473 14 EEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAG-TSALELSNYQRFI-RQLDQRIQQQQQELALLQQEV 91 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888888999999999999888877654443 2222222 2222 233333344444444444444
Q ss_pred HHHHHhh
Q 024197 204 KELEENI 210 (271)
Q Consensus 204 e~aq~EL 210 (271)
+.++..|
T Consensus 92 e~~r~~l 98 (141)
T TIGR02473 92 EAKRERL 98 (141)
T ss_pred HHHHHHH
Confidence 4444444
No 126
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.52 E-value=1.3e+02 Score=29.03 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 87 AAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 87 ~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
.|++.---||.....- +. ..+...+..|++-...|..+++....==-.+..+.+.+..|+..++....++.
T Consensus 129 ~ak~~WYeWR~klleg-Lk--------~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 129 EAKKMWYEWRMKLLEG-LK--------EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4667777788554321 11 12233444444444444444433332222233444444444444444444443
Q ss_pred HhcCCc-hHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 167 AQLKPP-LMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 167 ~~~~ps-~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL 210 (271)
.. +|. ..++|.-+. .++..+..+++++.+.+.++......+
T Consensus 200 ~~-d~~eL~~lk~~l~--~~~~ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 200 DC-DPTELDRAKEKLK--KLLQEIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred hC-CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 121 233332222 233444444444444444444444333
No 127
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.01 E-value=91 Score=30.43 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=56.4
Q ss_pred CCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh-hHHH
Q 024197 109 TSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP-AIHE 187 (271)
Q Consensus 109 ~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDP-AVNl 187 (271)
-++..+++.---..|..--+.|..|..+ -|||.+|-|+.=-+++-.++|..+.---..+-.+--|- -.+.
T Consensus 208 dS~tGK~LMAKCR~L~qENeElG~q~s~---------Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqs 278 (330)
T KOG2991|consen 208 DSKTGKMLMAKCRTLQQENEELGHQASE---------GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQS 278 (330)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhc---------ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchh
Confidence 4556677777777777777778877744 46888888888888888888777543111111111111 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 024197 188 EFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~EL 210 (271)
-|.=|-.+|+++++++..+...+
T Consensus 279 TiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 279 TILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777776666655444
No 128
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.87 E-value=1.5e+02 Score=31.75 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 128 EMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 128 ~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
-+|+..+-+.+-||.-|+.-.+.+|.|.--+.-+|+.||+.+
T Consensus 152 ~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQ 193 (772)
T KOG0999|consen 152 RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQ 193 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhh
Confidence 467888999999999999999999999999999999999886
No 129
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=65.46 E-value=1.1e+02 Score=27.74 Aligned_cols=190 Identities=21% Similarity=0.309 Sum_probs=104.8
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHH
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEA 142 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~ 142 (271)
++-.|....++|.++|..|...|+.-..+-..-+..|.. .+- .+|-..+.. .++..=.+++..|..++.=-.
T Consensus 30 ~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~-~W~---r~~S~~~~~----~l~~~l~~~~~~L~~A~~sD~ 101 (296)
T PF13949_consen 30 SLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGE-RWT---RPPSSELNA----SLRKELQKYREYLEQASESDS 101 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-TCG---SS-HHHHCH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCc---CCCcHhhHH----HHHHHHHHHHHHHHHHHhhHH
Confidence 445555566667777777777777777777777755522 111 112222222 556666677777888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhcccCCCc
Q 024197 143 AFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLK---NLVEEKDKKVKELEENIAAVSFTANS 219 (271)
Q Consensus 143 vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr---~eLee~~~kle~aq~ELsAwkFTpdS 219 (271)
.+...+..-..-|.-|.....+|.... |+..-. ..|.+...+..|+ .+|.+....-...-++|.. ++. +.
T Consensus 102 ~~~~~~~~~~~~l~~L~~~~~~L~~~l-p~~~~~----~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~-~~~-~d 174 (296)
T PF13949_consen 102 QLRSKLESIEENLELLSGPIEELEASL-PSSSPS----DSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE-KLQ-ND 174 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHHS---B-------SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHcCChhhHHhhC-CCCCcc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-hc
Confidence 888888887777776766666665543 433211 2344444444444 5566666666666777776 554 44
Q ss_pred hhHHHHHHHHH--hHH---HHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 220 KMGKALMAKCK--TLQ---EENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 220 ~~GKrLmaKCR--~Lq---eENEELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
.+.+.|+.--+ .-. -=.+||.+- ...+..+..-+..|.....+++..+
T Consensus 175 ~i~~~l~~~~~~~~~~~~~lf~~eL~k~--~~~~~~i~~~~~~Q~~ll~~i~~~~ 227 (296)
T PF13949_consen 175 DISKLLSELNKNGSADFEALFEEELKKF--DPLQNRIQQNLSKQEELLQEIQEAN 227 (296)
T ss_dssp HHHHHHHHHHHSSS--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhccCCccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555552111 000 001344441 1345667777777777777776654
No 130
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.39 E-value=27 Score=29.71 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE 208 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ 208 (271)
...++++..+.++++.|... | .+..+-..+..|+.++...+.++..++.
T Consensus 89 ~~l~~~~k~l~~eL~~L~~~--~---------t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 89 AELKKEVKSLEAELASLSSE--P---------TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHhcC--C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555333 3 4444556678888888888888888876
No 131
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=64.93 E-value=24 Score=36.21 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHH
Q 024197 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEF--------RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK 223 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef--------~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GK 223 (271)
-.|||+|+++++.+= ....++..+|..|+.+.+.+.= ..--.+|+.-+.++.++..+|-.
T Consensus 228 l~EIq~Lk~qL~~~~-~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIs----------- 295 (488)
T PF06548_consen 228 LEEIQDLKSQLQYYT-DSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWIS----------- 295 (488)
T ss_pred HHHHHHHHHHHHhcc-ccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhh-----------
Confidence 479999999999762 2244466777777776665432 12224455555555555544432
Q ss_pred HHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 224 rLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
|....|.=.+-| | -++-.++++|-..|++.+||.-+++
T Consensus 296 -LteeLR~dle~~----r----~~aek~~~EL~~Ek~c~eEL~~al~ 333 (488)
T PF06548_consen 296 -LTEELRVDLESS----R----SLAEKLEMELDSEKKCTEELDDALQ 333 (488)
T ss_pred -hHHHHHHHHHHH----H----HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 222222222211 1 2335678888888888888876653
No 132
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.87 E-value=91 Score=31.74 Aligned_cols=98 Identities=13% Similarity=0.223 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch------------
Q 024197 153 QEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSK------------ 220 (271)
Q Consensus 153 QEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~------------ 220 (271)
+||+.++..|.-||+.+.. .+..+..-+.....++...+. .+..+++++.
T Consensus 155 ~el~~lrrdLavlRQ~~~~----------------~~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~ 216 (426)
T smart00806 155 AELKSLQRELAVLRQTHNS----------------FFTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLS 216 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHH
Confidence 8899999999999888654 334444444444444444444 2344445542
Q ss_pred -hHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhh
Q 024197 221 -MGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 221 -~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~ 268 (271)
...+|++|..-||.=.|.|-+-+..-.+.++..+|..-.+-+...++.
T Consensus 217 ~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~ke 265 (426)
T smart00806 217 EDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKE 265 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 335788888999999999999999888888888777666655555443
No 133
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=64.68 E-value=57 Score=24.42 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHH--HhhhChhHHHHHHHHHHHHHHHHHHHHHH
Q 024197 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR--RLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (271)
Q Consensus 129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR--~~LlDPAVNlef~rLr~eLee~~~kle~a 206 (271)
.....|.++.+.-.-...+|..++.++.++...+.... . ..+...++ ..++ ..+...+..++..+...+..++.+
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~-~~l~~~i~~~~~~~~~~~~~~~~~ 78 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYI-SALEQAIQQQQQELERLEQEVEQA 78 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888888888877666654 2 22222222 2222 233334445555555555555555
Q ss_pred HHhhh
Q 024197 207 EENIA 211 (271)
Q Consensus 207 q~ELs 211 (271)
+..|.
T Consensus 79 r~~l~ 83 (123)
T PF02050_consen 79 REELQ 83 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 134
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=64.39 E-value=67 Score=25.09 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=61.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--------CCCc
Q 024197 148 FAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSF--------TANS 219 (271)
Q Consensus 148 LAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkF--------TpdS 219 (271)
++.-..+++++..++.+.+..-......++.+..+|.-...|..++.....+.....+.-.-..+-+. +.-.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 149 (181)
T PF12729_consen 70 LATDPEERQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILNGEAR 149 (181)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHH
Confidence 33555566666666666666555556667777788888888888888888887777666543333222 2222
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 220 KMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 220 ~~GKrLmaKCR~LqeENEELGr~l 243 (271)
+....+...+..|.+.|...+...
T Consensus 150 ~~~~~~~~~l~~l~~~~~~~a~~~ 173 (181)
T PF12729_consen 150 PAFDELRDALDELIEYNNQQAEQA 173 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665443
No 135
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=63.48 E-value=91 Score=30.62 Aligned_cols=91 Identities=19% Similarity=0.303 Sum_probs=65.2
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHH
Q 024197 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKN 194 (271)
Q Consensus 115 l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~ 194 (271)
-+.++-+.|+++=...++.+++..+-..-+...|+.-.+.+.++...+..++.. .++.-...+..|+.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~------------~~~e~~~~i~~L~~ 75 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS------------LSAEERELIEKLEE 75 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------CChhHHHHHHHHHH
Confidence 456777888888888888888888888888888888888887777776666433 34455566777777
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchhHHH
Q 024197 195 LVEEKDKKVKELEENIAAVSFTANSKMGKA 224 (271)
Q Consensus 195 eLee~~~kle~aq~ELsAwkFTpdS~~GKr 224 (271)
.+.+.+..+.+-+ .|.|.. .|..
T Consensus 76 ~Ik~r~~~l~DmE------a~LPkk-NGly 98 (330)
T PF07851_consen 76 DIKERRCQLFDME------AFLPKK-NGLY 98 (330)
T ss_pred HHHHHHhhHHHHH------hhCCCC-CCcc
Confidence 7777777666555 456665 5543
No 136
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.39 E-value=1.7e+02 Score=29.40 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=40.1
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHH
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKA 137 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~ 137 (271)
.-..+..|+...+.|...+.....-...++++++.|+.|- .+..+.|+.-|.--++|-+|+++.
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~----------~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREY----------QFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777888887777662 245555555555555555555544
No 137
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.11 E-value=94 Score=27.62 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=33.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL 210 (271)
++.++..+++++..++.++..+... ||. .|..|+.++......+..-.+++
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~~~~-------------Dp~---~i~~~~~~~~~~~~~anrwTDNI 158 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKYSEN-------------DPE---KIEKLKEEIKIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------------CHH---HHHHHHHHHHHHHHHHHHHHhhH
Confidence 6788888888888888888755332 664 45666666666655555554444
No 138
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.02 E-value=66 Score=24.53 Aligned_cols=80 Identities=15% Similarity=0.307 Sum_probs=48.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCch-H-HHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL-M-QARRLLLDPAIHEEFRRLKNLVEEKDKKVKELE 207 (271)
Q Consensus 130 LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~-~-qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq 207 (271)
+..+++....+=..+...+..++.++.++...+.+|...-.+.. - ..=.+|+--.+......|...++..+.+++.+.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888999999999999999999999977633210 0 000223333344444444444444444444444
Q ss_pred Hh
Q 024197 208 EN 209 (271)
Q Consensus 208 ~E 209 (271)
..
T Consensus 83 ~~ 84 (106)
T PF01920_consen 83 KQ 84 (106)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 139
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.18 E-value=1.6e+02 Score=28.74 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchh--hhHHHHHHHHH
Q 024197 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQ--LSVKLALQKSL 261 (271)
Q Consensus 186 Nlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~--LE~eLAlqK~~ 261 (271)
|.-|..|-.+|......+..-|+++.... .-..-|=.||+.+-.|||||+..+...|-.+ |.+++.-.+..
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~Ll-----sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLL-----SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777765541 1224466799999999999999887765443 44554444433
No 140
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=61.34 E-value=17 Score=37.31 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhH
Q 024197 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (271)
Q Consensus 186 Nlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G 222 (271)
|...+.||++|.....|++.+++...++-|--=|++|
T Consensus 82 ~d~~~~~~qqiAn~~lKv~~l~da~~t~~~kGLsITG 118 (514)
T PF11336_consen 82 NDDATEMRQQIANAQLKVESLEDAAETGGFKGLSITG 118 (514)
T ss_pred hHHHHHHHHHHHhhhhhHHHHhhHHhcCCcccceEee
Confidence 8889999999999999999999999998875555444
No 141
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.87 E-value=43 Score=28.16 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHH
Q 024197 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLA 256 (271)
Q Consensus 182 DPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLA 256 (271)
.|.|.+ +.+|.+.|...+.++..++.++.++.=+-+. |-.-.=.|..+|+++.... .++..|+.++.
T Consensus 12 ~~~~~~-ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~-----l~~Eiv~l~~~~e~~~~~~--~~~~~L~~el~ 78 (120)
T PF12325_consen 12 GPSVQL-VERLQSQLRRLEGELASLQEELARLEAERDE-----LREEIVKLMEENEELRALK--KEVEELEQELE 78 (120)
T ss_pred CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 455544 5899999999999999999999888554444 4444445666666664222 33344444443
No 142
>PRK11637 AmiB activator; Provisional
Probab=60.47 E-value=1.7e+02 Score=28.50 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=29.9
Q ss_pred HHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024197 118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKA 167 (271)
Q Consensus 118 ~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~ 167 (271)
..|..|...=..+.+++......=..+-..|+.++.+|.++...|...+.
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555566666666666666677777777776666666543
No 143
>PRK11281 hypothetical protein; Provisional
Probab=60.46 E-value=3e+02 Score=31.25 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=15.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHH
Q 024197 74 CKDTLATCQLELEAAKSEIQKWH 96 (271)
Q Consensus 74 ~~~~~~~~~~~l~~a~~ei~kW~ 96 (271)
-+.++++.+.+++.|+.++.+=+
T Consensus 85 L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 85 LKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhh
Confidence 44566667777777777777555
No 144
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.07 E-value=3e+02 Score=31.22 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 024197 82 QLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 82 ~~~l~~a~~ei~kW~~~fq~ 101 (271)
+..+.++.+.++.|++.++.
T Consensus 108 eq~l~~~~~~L~~~q~~l~~ 127 (1109)
T PRK10929 108 EQEILQVSSQLLEKSRQAQQ 127 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555544443
No 145
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.02 E-value=2.7e+02 Score=29.94 Aligned_cols=143 Identities=22% Similarity=0.290 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 024197 85 LEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRD 164 (271)
Q Consensus 85 l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~d 164 (271)
+..|+.+|++--..++.+.--+ -.+-.-+.+.+..|++.-++|.+.+.++..|-..|+.|+... ++-
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Q---l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v----------l~~ 622 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQ---LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV----------LQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 5667777777655554431100 011123445555566666666666655555555554444322 222
Q ss_pred HHHhcCCchHHHHHhh---hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch---hHHHHHHHHH-hHHHHHH
Q 024197 165 LKAQLKPPLMQARRLL---LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSK---MGKALMAKCK-TLQEEND 237 (271)
Q Consensus 165 lK~~~~ps~~qlR~~L---lDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~---~GKrLmaKCR-~LqeENE 237 (271)
+. .+.|....+-+-+ ++ .++..+..|+.-|++.+.+++..+..+. ++.++..+ .+..=+..++ .|.++.+
T Consensus 623 l~-~~~P~LS~AEr~~~~EL~-~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~ 699 (717)
T PF10168_consen 623 LN-SQLPVLSEAEREFKKELE-RMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSPKKKSIVLSESQKRTIKEILKQQGE 699 (717)
T ss_pred Hh-ccCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCccCCHHHHHHHHHHHHHHHH
Confidence 21 2234321111111 11 3444456666666666666666555555 66655432 3322222222 3455555
Q ss_pred HHhhhh
Q 024197 238 EIGRQN 243 (271)
Q Consensus 238 ELGr~l 243 (271)
+++.++
T Consensus 700 ~I~~~v 705 (717)
T PF10168_consen 700 EIDELV 705 (717)
T ss_pred HHHHHH
Confidence 555544
No 146
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=57.63 E-value=2.3e+02 Score=29.13 Aligned_cols=132 Identities=23% Similarity=0.312 Sum_probs=81.0
Q ss_pred Hhchh-hhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCC---CChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHH
Q 024197 72 QNCKD-TLATCQLELEAAKSEIQKWHSSFQNELFIPPGTS---PEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVT 147 (271)
Q Consensus 72 ~~~~~-~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~---~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~r 147 (271)
+.|-+ +++-+..+++-|..|++..+ +++.+. ...+ .+++++ -+++.|+..|++|=+|+.+..++|.-|---
T Consensus 138 ~eC~d~l~~~ld~e~~~~~~e~~~Y~---~~l~~L-e~~~~~~~~~~~~-~e~~~l~~eE~~L~q~lk~le~~~~~l~~~ 212 (447)
T KOG2751|consen 138 EECMDVLLNKLDKEVEDAEDEVDTYK---ACLQRL-EQQNQDVSEEDLL-KELKNLKEEEERLLQQLEELEKEEAELDHQ 212 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-hhcCcccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 45678899999999999888 443322 1222 334444 578899999999999999999999988777
Q ss_pred HhhHHHHHHHHHHH-HHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhccc
Q 024197 148 FAKREQEIAELKSA-VRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELE-ENIAAVSF 215 (271)
Q Consensus 148 LAtKEQEiqEl~sq-i~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq-~ELsAwkF 215 (271)
|..++.+-.++... .+.|+-. ....|+. |.-+-++..|..+++=...-++.+. ...-+|.|
T Consensus 213 l~e~~~~~~~~~e~~~~~~~ey----~~~~~q~---~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F 275 (447)
T KOG2751|consen 213 LKELEFKAERLNEEEDQYWREY----NNFQRQL---IEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATF 275 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHhh---hcccchHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 77666655444432 2223222 1122333 3334455555555555555554444 34567777
No 147
>PF13514 AAA_27: AAA domain
Probab=57.12 E-value=3.1e+02 Score=30.35 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=24.9
Q ss_pred chhHHHHhhHHHHHhch---hhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 59 VATGMILSLRESLQNCK---DTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 59 ~~t~~il~lr~~l~~~~---~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
+....+...-+.+..+. ..+..++..++....++..|...+..
T Consensus 723 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~ 768 (1111)
T PF13514_consen 723 ASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAA 768 (1111)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 55556666777777777777766554
No 148
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=57.02 E-value=1.6e+02 Score=27.20 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=69.8
Q ss_pred hHHHHHhchhhhhh-hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh-hhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197 67 LRESLQNCKDTLAT-CQLELEAAKSEIQKWHSSFQNELFIPPGTSPEP-RLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (271)
Q Consensus 67 lr~~l~~~~~~~~~-~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~-~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl 144 (271)
+.+.|.+....|.. .+..|...+..++.....+......- | +.+.+.-+.|...+.+|+ +.+
T Consensus 148 ~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~------p~~~l~~~~~~Ld~l~~rL~----------~~~ 211 (319)
T PF02601_consen 148 LLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRL------PERKLEQQQQRLDELKQRLK----------QAI 211 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 34444444444432 34555555555655554443321110 2 233333333443333333 355
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSK 220 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~ 220 (271)
..+|....+.+..+...+... .+...+.... -.++.+-.+|+..+...+.+++.+...|.+. +|..+
T Consensus 212 ~~~l~~~~~~L~~l~~~l~~~-----~~~~~l~~~~--~~~~~l~~~~~~~l~~~~~~l~~~~~~L~~l--sP~~~ 278 (319)
T PF02601_consen 212 QQKLQRKRQRLQNLSNRLKRQ-----SPQQKLNQQR--QQLQRLQKRLQRKLSQKRQRLERLEARLEAL--SPLKI 278 (319)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-----hhhhHHHHHH--HHhhhhhHHHhhhhHHHHHHHHHHHHHHHcC--CHHHH
Confidence 667777777777766443322 2222233322 5566666777788888899999999999887 77654
No 149
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=56.79 E-value=1.9e+02 Score=27.78 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=19.8
Q ss_pred HhchhhhhhhHHHHHHHHHHHHHHH
Q 024197 72 QNCKDTLATCQLELEAAKSEIQKWH 96 (271)
Q Consensus 72 ~~~~~~~~~~~~~l~~a~~ei~kW~ 96 (271)
.--.+.|+..+.+|++|...++.++
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345568888889999999999888
No 150
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.60 E-value=41 Score=25.98 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhh
Q 024197 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 225 LmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~ 268 (271)
++..+..|+.||++|.... ..|..+....+..|+.|+..
T Consensus 16 aveti~~Lq~e~eeLke~n-----~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKN-----NELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777544 44455666666666666543
No 151
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.46 E-value=48 Score=30.82 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcc
Q 024197 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG 246 (271)
Q Consensus 184 AVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lseg 246 (271)
..+.....|+.++++.+++++.++++--|.+=..+. +-.--..|-+||+.|+.++..|
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~-----~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG-----LQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHHhcc
Confidence 456778899999999999999999988888544443 4455566777777777776554
No 152
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=56.38 E-value=63 Score=29.97 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=51.0
Q ss_pred HHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHH
Q 024197 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE 198 (271)
Q Consensus 119 ~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee 198 (271)
||.++....--|-+-++...|||..=..-=+.+|+|+.-++.|=..- .++.. .+.. .-...|+..|.+
T Consensus 1 Yvekv~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~----~~~~~-------~~~~-~~~~~L~~~LrE 68 (205)
T PF12240_consen 1 YVEKVERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQG----NSSGS-------SSPS-NNASNLKELLRE 68 (205)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCCCC-------CCCC-CcHHHHHHHHHH
Confidence 34455555555666666788999887777788999998888773221 11111 0111 223556677777
Q ss_pred HHHHHHHHHHhhhhc
Q 024197 199 KDKKVKELEENIAAV 213 (271)
Q Consensus 199 ~~~kle~aq~ELsAw 213 (271)
++.++=.++.++.-|
T Consensus 69 kEErILaLEad~~kW 83 (205)
T PF12240_consen 69 KEERILALEADMTKW 83 (205)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666666555
No 153
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=56.34 E-value=1.6e+02 Score=26.95 Aligned_cols=64 Identities=27% Similarity=0.268 Sum_probs=47.3
Q ss_pred hHHHHHhhhC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-----chhHHHHHHHHHhHHHHH
Q 024197 173 LMQARRLLLD-PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTAN-----SKMGKALMAKCKTLQEEN 236 (271)
Q Consensus 173 ~~qlR~~LlD-PAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpd-----S~~GKrLmaKCR~LqeEN 236 (271)
..++|.++.| |.....+..|+.-+..+-...+++..--.+-+|.+- |..||.||+..|.--++.
T Consensus 93 ~~~l~~l~~d~p~~~~~l~~l~~~i~~~l~~~~~~i~~~r~~~~eaa~~ii~s~~Gk~lm~~ir~~l~~i 162 (207)
T COG5278 93 LEELRALTADDPELLESLDDLEPLIQWKLAEADETIPLRRDGKLEAAVQIISSDQGKVLMDAIRQYLQEI 162 (207)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4678888999 999988888888777766666666555555556554 368999999999765543
No 154
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=56.00 E-value=20 Score=29.03 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=32.4
Q ss_pred hhhcCCCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHH
Q 024197 52 VEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSE 91 (271)
Q Consensus 52 ~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~e 91 (271)
..+..++-..|-+..-.+.+|.-+.+|++++.||.+|+++
T Consensus 56 ~~~~~~~di~~eV~kTh~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 56 LKESDQRDIMGEVSKTHEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566677777777888999999999999999999864
No 155
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=55.98 E-value=1.3e+02 Score=26.24 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=56.5
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc--ccCCCCCCCCChhhhHHHH--------------HhhHhhH
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN--ELFIPPGTSPEPRLVINYL--------------QTLKSSE 127 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~--e~~i~a~~~~~~~l~~~~l--------------~~Lk~sE 127 (271)
|-+.=++|+.--+.|....+++..+...|..-+.. .+ |..||.|.+.+....+.+. .+.-+.-
T Consensus 18 l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~-~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAi 96 (145)
T COG1730 18 LQSQIESLQAQIAALNAAISELQTAIETLENLKGA-GEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAI 96 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHH
Confidence 33444566666666666677777777777666532 32 7888888887766555442 2234444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 024197 128 EMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDL 165 (271)
Q Consensus 128 ~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dl 165 (271)
+.|+....+..+.-.-+.--|+.+.+.+..+..+++.+
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444444455555554444444443
No 156
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.49 E-value=1.6e+02 Score=28.81 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=38.0
Q ss_pred CCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024197 108 GTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKA 167 (271)
Q Consensus 108 ~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~ 167 (271)
+-+..|---++||+.|+.-|.-+++=-...+ |. +.||-.+|-||.||++||.-||.
T Consensus 48 NHGikPP~PEQYLTPLQQKEV~iRHLkakLk--es--~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 48 NHGIKPPNPEQYLTPLQQKEVCIRHLKAKLK--ES--ENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred CCCCCCCCHHHhcChHHHHHHHHHHHHHHHH--HH--HHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444458999999999986655333332 22 34677789999999999887754
No 157
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=55.35 E-value=28 Score=25.14 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH
Q 024197 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~ 199 (271)
+.+|+.--.-|+.||+...+.. .+||+|+.+ ..|+.++...
T Consensus 2 ~~~I~~QGekVR~LKa~ka~k~------~i~~eV~~L-L~LK~~~k~~ 42 (45)
T cd00939 2 EKEVAEQGNKVRKLKASKADKS------VWQPEVNKL-LDLKKQLALA 42 (45)
T ss_pred hHHHHHHHHHHHHHHhccCcHH------HHHHHHHHH-HHHHHHHHHh
Confidence 4667777778899998865533 599999987 5677777654
No 158
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.25 E-value=40 Score=25.89 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhh
Q 024197 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 224 rLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~ 268 (271)
.|+.+|..|..||.-|-.+. +.+..+=+.....|+--|+.
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~-----~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQE-----KTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999988554 56666666665555544443
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.96 E-value=1.4e+02 Score=29.16 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhh--hhcccchhhhHHHHHHHHHHHHH
Q 024197 192 LKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQ--NEEGETHQLSVKLALQKSLNAEL 265 (271)
Q Consensus 192 Lr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~--lsegria~LE~eLAlqK~~~eEL 265 (271)
|-..|+.-+.+++..+.+.++++=--++ ||.-|..|..-++-|... +-++.|.-||++|+-.|+.++-|
T Consensus 44 lEAaLqKQKqK~e~ek~e~s~LkREnq~-----l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~L 114 (307)
T PF10481_consen 44 LEAALQKQKQKVEEEKNEYSALKRENQS-----LMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKL 114 (307)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777778888888888888766666 999999998888766553 45677888888888888777654
No 160
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.64 E-value=1.3e+02 Score=25.34 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=53.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHH
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK 223 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GK 223 (271)
+.++||+++.+|..++++.-+|-... .. |+.+.+.|.+- ..
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqk------------------------d~-------L~~~l~~L~~q--------~~ 54 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQK------------------------DQ-------LRNALQSLQAQ--------NA 54 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HH-------HHHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhH------------------------HH-------HHHHHHHHHHH--------HH
Confidence 56889999999999999988882221 11 22222222221 12
Q ss_pred HHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 024197 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (271)
Q Consensus 224 rLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~ 262 (271)
.+-.+|.-|+-+..|+-+.+..-|+|.++.+--+.|.+.
T Consensus 55 s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 256788888888888888888888888766666655543
No 161
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.32 E-value=1.1e+02 Score=24.22 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024197 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKA 167 (271)
Q Consensus 136 e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~ 167 (271)
-..+|-..+-.++...++++..+..+++.++.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666644
No 162
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=53.18 E-value=3.4e+02 Score=29.75 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Q 024197 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLK 170 (271)
Q Consensus 129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ 170 (271)
++++.+..+++.|--++..|..+|-.-..++..+.++|....
T Consensus 517 k~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~ 558 (786)
T PF05483_consen 517 KQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELK 558 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888888888888877766553
No 163
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.75 E-value=1.7e+02 Score=26.03 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Q 024197 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLK 170 (271)
Q Consensus 129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ 170 (271)
.++.+..+.+.|=..+-.++....++|.+.+..+.++|....
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777778888888887777766643
No 164
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=52.68 E-value=90 Score=31.76 Aligned_cols=60 Identities=18% Similarity=0.374 Sum_probs=48.3
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhh
Q 024197 181 LDPAIHEEFRRLKNLVEEKDKKVKEL-EENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQ 242 (271)
Q Consensus 181 lDPAVNlef~rLr~eLee~~~kle~a-q~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~ 242 (271)
--|.++..|.+|-..+++.+.++... +..+. .|.|.-...+-|+.+.+.|..|..++-..
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~--df~~~~~~~~~L~~~~~~l~~eI~d~l~~ 68 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYS--DFSPSLQSAKDLIERSKSLAREINDLLQS 68 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 34677888899999999998888755 34444 88999999999999999999999666544
No 165
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=52.46 E-value=26 Score=25.51 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 024197 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS 219 (271)
Q Consensus 185 VNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS 219 (271)
++..+..|..++++.+.+.+.++.++..++-+|+-
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ 56 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDY 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45667788888888888888888888888666654
No 166
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=52.07 E-value=3e+02 Score=31.05 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=66.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 131 KEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 131 keQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL 210 (271)
.+++.+.++-=.+|.-++..+|-|.|-+...++.+-.. +|. =+-+|+++..++..+..+|
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d-------~ke-------------~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDD-------KKE-------------NEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-------------HHHHHHhhHHHHHHHHHHH
Confidence 33443444444567778888888888887777666322 221 1246777777777778888
Q ss_pred hhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 211 AAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 211 sAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
+|-.-.-. -.|..|-.||-.|-+=|+++-- +..+.+-.++.++++-++|
T Consensus 158 sAk~~eIf-~~~~~L~nk~~~lt~~~~q~~t---------kl~e~~~en~~le~k~~k~ 206 (1265)
T KOG0976|consen 158 SAKAHDIF-MIGEDLHDKNEELNEFNMEFQT---------KLAEANREKKALEEKLEKF 206 (1265)
T ss_pred hhhhHHHH-HHHHHHhhhhhHHhHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 87643222 3688888899888877777643 3334444444444444433
No 167
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=51.70 E-value=1.5e+02 Score=30.76 Aligned_cols=83 Identities=22% Similarity=0.357 Sum_probs=46.1
Q ss_pred HHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhH--HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHH
Q 024197 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR--EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLV 196 (271)
Q Consensus 119 ~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtK--EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eL 196 (271)
.|++.+..|+ ++..+ +.++.-...++..+ .+++.+|+.+|..++..-=.+...+++ .-.+|.+|++++
T Consensus 159 ~L~T~~~~~~-~~~~~---k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~------~~~e~d~lk~e~ 228 (555)
T TIGR03545 159 DLKTVETAEE-IEKSL---KAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQK------IKEEFDKLKKEG 228 (555)
T ss_pred CCCcHHHHHH-HHHHH---HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHH------HHHHHHHHHHHH
Confidence 3444444433 33333 33444455555555 889999999999998752121222222 234566666666
Q ss_pred HHHHHHHHHHHHhhh
Q 024197 197 EEKDKKVKELEENIA 211 (271)
Q Consensus 197 ee~~~kle~aq~ELs 211 (271)
+..+.+++.++++|+
T Consensus 229 ~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 229 KADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555554
No 168
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.49 E-value=2.1e+02 Score=26.87 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLD--PAIHEEFRRLKNLVEEKDKKVKELE 207 (271)
Q Consensus 130 LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlD--PAVNlef~rLr~eLee~~~kle~aq 207 (271)
|....+.+++|.+-|..-|+....++..+..++.+++..+.. ++.-+.+ -.+-..+..++.+......+-+.+.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~----~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~ 169 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER----LEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555443321 2211111 2334445555555555555555555
Q ss_pred Hhh
Q 024197 208 ENI 210 (271)
Q Consensus 208 ~EL 210 (271)
.+|
T Consensus 170 ~~l 172 (239)
T COG1579 170 EKL 172 (239)
T ss_pred Hhc
Confidence 433
No 169
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=51.29 E-value=3e+02 Score=28.45 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 245 EGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 245 egria~LE~eLAlqK~~~eELrk~~e 270 (271)
+-+++.||.+.+...-.+++|-+.||
T Consensus 258 e~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 258 ERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999988876
No 170
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=51.29 E-value=1e+02 Score=30.48 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=40.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh----hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP----AIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDP----AVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
+-.|-.+.++..++..++..||..++--+.+......++ ++-.....|+++|.+.+.+++.+++++..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665544443333322222 34445577788888888888777766643
No 171
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.20 E-value=3.3e+02 Score=28.97 Aligned_cols=136 Identities=18% Similarity=0.294 Sum_probs=0.0
Q ss_pred hHHHHHhhHhhHHHHHHHHHHHHh---HHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHH
Q 024197 116 VINYLQTLKSSEEMLKEQLEKAKK---KEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRL 192 (271)
Q Consensus 116 ~~~~l~~Lk~sE~~LkeQl~e~kr---RE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rL 192 (271)
+.+++.+|+..-..|-+++++..+ |+..+=-+.++++--+..+.+++..++.- -|..--.+..|
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k-------------~~~~~~~l~~l 299 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK-------------KQHMEKKLEML 299 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh-------------hHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhcC
Q 024197 193 KNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG 271 (271)
Q Consensus 193 r~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~ee 271 (271)
+.++++.+.+++.++.+-...+-.=+-+ .-=.+-.+..-.|+++|-|.+ ..+.+++.-..+-+-+++..+++
T Consensus 300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--~iS~~dve~mn~Er~~l~r~l-----~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQKENDELKKQIELQ--GISGEDVERMNLERNKLKREL-----NKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHH
No 172
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.70 E-value=1.9e+02 Score=25.93 Aligned_cols=51 Identities=8% Similarity=0.214 Sum_probs=38.3
Q ss_pred Chh-hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q 024197 112 EPR-LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAV 162 (271)
Q Consensus 112 ~~~-l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi 162 (271)
||. ++..+++.++..-.+.+..+....-.+..+-..+...+..+.++..+.
T Consensus 24 DP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 24 DPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577 888888888887777777887777777777777777777777666543
No 173
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=50.28 E-value=3e+02 Score=28.25 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHH-Hhhhh
Q 024197 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDE-IGRQN 243 (271)
Q Consensus 190 ~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEE-LGr~l 243 (271)
.+|+..+.....|..+++++++... +.=..|++++|.|+.+.|. |.+..
T Consensus 449 ~k~~~~~~~l~~kr~e~~~e~~~l~-----pkL~~l~~~Tr~Lq~~iE~~ISk~y 498 (507)
T PF05600_consen 449 EKLRRKREDLEEKRQEAQEEQQELE-----PKLDALVERTRELQKQIEADISKRY 498 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666667777777777776552 2224589999999999886 66653
No 174
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=49.67 E-value=2e+02 Score=25.99 Aligned_cols=193 Identities=21% Similarity=0.280 Sum_probs=94.2
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHH-------Hhhhc-ccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWH-------SSFQN-ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~-------~~fq~-e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~ 135 (271)
|-.|+..|..-.+.+..++.+|+.+...+.+-- .-++. |.-+. ..+.++ ....+.|.+.+ ....
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le---~~eerL-~~~~~kL~~~e----~~~d 74 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELE---RAEERL-EEATEKLEEAE----KRAD 74 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHCCC-CHHHHHHHHHH----HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHH-HHHHHHHHHHH----HHHH
Confidence 445677776666666666666666555443332 22222 11110 000000 01112222222 3455
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHH----HHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 136 KAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQA----RRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 136 e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~ql----R~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
++.++=.+|-.|...-+--|..+-.++...+.....+-..+ |.+- .|--.+.+.-..++....++..++++|.
T Consensus 75 e~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~---~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 75 ESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLK---VLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 55566666666777777777777777776666543322111 1111 1333445555666666666777777666
Q ss_pred hcccCCCc------hh---HHHHHHHHHhHHHHHHHHhh--hhhcccchhhhHHHHHHHHHHHHHHh
Q 024197 212 AVSFTANS------KM---GKALMAKCKTLQEENDEIGR--QNEEGETHQLSVKLALQKSLNAELKS 267 (271)
Q Consensus 212 AwkFTpdS------~~---GKrLmaKCR~LqeENEELGr--~lsegria~LE~eLAlqK~~~eELrk 267 (271)
.+...=.| .. =-.+=.+++.|.+...+.-. ...+.++..|+..+.-........+.
T Consensus 152 ~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 152 SVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65332222 11 12344556666665554432 23345556666665555544444443
No 175
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=49.62 E-value=3e+02 Score=28.03 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
.+..|+++|.|+.+..+++..|+....|+. |.| ..|+..|...++.+...+..|.
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~s---------PqV----~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQN---------PLI----PRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---------Cch----hHHHHHHHHHHHHHHHHHHHhh
Confidence 456677788888888888777766545432 332 2344555555555555555554
No 176
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.94 E-value=2.1e+02 Score=25.95 Aligned_cols=97 Identities=20% Similarity=0.325 Sum_probs=58.5
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHH--------HHHHHHH
Q 024197 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVE--------EKDKKVK 204 (271)
Q Consensus 133 Ql~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLe--------e~~~kle 204 (271)
|+.-.+..-.-+-..+++.++++.++..++..+..... -+.|.+--++..|..-++ +-..+++
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~---------~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~ 134 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ---------ELVPLMEQMIDELEQFVELDLPFLLEERQERLA 134 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 33333333344555777888888888888887755533 467888888888877444 4556666
Q ss_pred HHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 205 ELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 205 ~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
.++..|.. |+-+.+-++-.=.-.++.|++ .|+.+
T Consensus 135 ~L~~~l~~----~dv~~~ek~r~vlea~~~E~~-yg~~i 168 (251)
T PF11932_consen 135 RLRAMLDD----ADVSLAEKFRRVLEAYQIEME-YGRTI 168 (251)
T ss_pred HHHHhhhc----cCCCHHHHHHHHHHHHHHHHH-hCCce
Confidence 66666654 444444444444445555653 45544
No 177
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=48.70 E-value=2.5e+02 Score=26.77 Aligned_cols=188 Identities=17% Similarity=0.194 Sum_probs=111.5
Q ss_pred hHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhH
Q 024197 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK 140 (271)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krR 140 (271)
...|=.|.+..++|...|..|..-|..=..+-.+.+..|.. . |.+.. ....|+.-=.+++..+..+..-
T Consensus 78 ~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~---~-----~~S~~---~~~~l~~~~~k~~~~L~~A~~s 146 (337)
T cd09234 78 VEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGK---R-----GSSIA---HVTELKRELKKYKEAHEKASQS 146 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCC---C-----CCchh---hHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677788888888888888888888888866652 1 22221 2345566667777788888888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhcccCC
Q 024197 141 EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLK---NLVEEKDKKVKELEENIAAVSFTA 217 (271)
Q Consensus 141 E~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr---~eLee~~~kle~aq~ELsAwkFTp 217 (271)
-..+-..+..-+.-|.-+.....+|... -|++.. +.+|.....+.+|| ++|...+..-...-++|..- -..
T Consensus 147 D~~l~~~~~~~~~~l~lL~~~~~~l~~~-iPs~~~----~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k-~~~ 220 (337)
T cd09234 147 NTELHKAMNLHIANLKLLAGPLDELQKK-LPSPSL----LDRPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDA-IHE 220 (337)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhh-CCCccc----cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc
Confidence 8888888887777777776667777555 454321 22344455555555 44555555555555666321 122
Q ss_pred CchhHHHHHHHH---HhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 218 NSKMGKALMAKC---KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 218 dS~~GKrLmaKC---R~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
+..+.+-|...- ..|. .+||++ =..-+..|+..++.|.....+|+.++
T Consensus 221 DDI~~~ll~~~~~~~e~lf--~~eL~k--~~~~~~~l~~~~~~Q~~ll~~i~~an 271 (337)
T cd09234 221 DDITSKLVTTTGGDMEDLF--KEELKK--HDQLVNLIEQNLAAQENILKALTEAN 271 (337)
T ss_pred CCchHHHHHhcchhHHHHH--HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333332221 1111 135655 22445667777777777777777655
No 178
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.37 E-value=2.8e+02 Score=27.32 Aligned_cols=134 Identities=21% Similarity=0.334 Sum_probs=66.4
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHH
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIV 146 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~ 146 (271)
-|.-|+..+.-..++...+..++..+.+-+..+..- +.--.+.+- .+-+-+..+-.-=...+.+|.+++.+=+-.--
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~--lekI~sREk-~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKT--LEKIESREK-YINNQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666677777776655333320 000000011 11111111111122233344444444455555
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhcCCchHHHH-HhhhC--h--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 147 TFAKREQEIAELKSAVRDLKAQLKPPLMQAR-RLLLD--P--AIHEEFRRLKNLVEEKDKKVKELEE 208 (271)
Q Consensus 147 rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR-~~LlD--P--AVNlef~rLr~eLee~~~kle~aq~ 208 (271)
.++.+-+++.++..++...|..-. =| +.|.| | -|.--+.+||+||.+++-+.--+++
T Consensus 295 ~V~~~t~~L~~IseeLe~vK~eme-----erg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 295 GVSERTRELAEISEELEQVKQEME-----ERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheehh
Confidence 566666666666666666655431 11 11222 4 3445678999999988877644443
No 179
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.31 E-value=1.6e+02 Score=24.39 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCc----hhHHHHHHHHHhHHHHHHHHhhh--hhcccchhhhHHHHHHHHHHHHHH
Q 024197 193 KNLVEEKDKKVKELEENIAAVSFTANS----KMGKALMAKCKTLQEENDEIGRQ--NEEGETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 193 r~eLee~~~kle~aq~ELsAwkFTpdS----~~GKrLmaKCR~LqeENEELGr~--lsegria~LE~eLAlqK~~~eELr 266 (271)
+..++....+++.+..||... .+++ .+|..|+-.= ..+-..+|... ..+.+|..||......++...++.
T Consensus 30 ~~~le~q~~e~~~~~~EL~~L--~~d~~VYk~VG~vlv~qd--~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 30 KSQIDLELREINKALEELEKL--PDDTPIYKIVGNLLVKVD--KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CCcchhHHHhhHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777777776 4665 4899988652 22222222221 233777888888888888888777
Q ss_pred hhhc
Q 024197 267 SQFE 270 (271)
Q Consensus 267 k~~e 270 (271)
+.++
T Consensus 106 ~~l~ 109 (121)
T PRK09343 106 AKIN 109 (121)
T ss_pred HHHH
Confidence 7654
No 180
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=48.18 E-value=4.7e+02 Score=29.82 Aligned_cols=29 Identities=3% Similarity=0.017 Sum_probs=15.0
Q ss_pred HhchhhhhhhHHHHHHHHHHHHHHHHhhh
Q 024197 72 QNCKDTLATCQLELEAAKSEIQKWHSSFQ 100 (271)
Q Consensus 72 ~~~~~~~~~~~~~l~~a~~ei~kW~~~fq 100 (271)
+.-+.....|+..++.|-.++..=+..+.
T Consensus 61 ~~~~~~~~~~~~~i~~ap~~~~~~~~~l~ 89 (1109)
T PRK10929 61 KGSLERAKQYQQVIDNFPKLSAELRQQLN 89 (1109)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344555555556555555555554444
No 181
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.95 E-value=1.5e+02 Score=29.22 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=29.6
Q ss_pred hhC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 180 LLD-PAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 180 LlD-PAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
-+| |.+...+..|+.++.+.+.+++.++..|.-+
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l 360 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKL 360 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468 9999999999999999999999999887555
No 182
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=47.83 E-value=47 Score=24.02 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHH
Q 024197 150 KREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLV 196 (271)
Q Consensus 150 tKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eL 196 (271)
.++.+|..--.-|+.||+.-.+.. .+||+|+.+ ..||.++
T Consensus 2 ~l~~~I~~QGe~VRkLKa~KA~k~------~i~~eV~~L-L~LKaql 41 (45)
T cd00938 2 KLEEAVKLQGELVRKLKAEKASKE------QIAEEVAKL-LELKAQL 41 (45)
T ss_pred cHHHHHHHHHHHHHHHHHccCCHH------HHHHHHHHH-HHHHHHh
Confidence 467778888888999998865543 599999987 4566543
No 183
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=47.29 E-value=1.6e+02 Score=24.20 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=30.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 130 LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
|.++++..+.-...+...+...+..+.++...+..++...
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456666677777888888888888888888887776654
No 184
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=47.15 E-value=1.5e+02 Score=28.48 Aligned_cols=85 Identities=12% Similarity=0.205 Sum_probs=44.6
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHH---HHHHHHHHHHHHHHHHHHHHH
Q 024197 131 KEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIH---EEFRRLKNLVEEKDKKVKELE 207 (271)
Q Consensus 131 keQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVN---lef~rLr~eLee~~~kle~aq 207 (271)
+-|+.+..+|+.++..++..++-++..+...+.-+ +..-+ ..++.-=++-.+. ..+..|+.++.+++.+....|
T Consensus 160 ~~~~~e~d~rnq~l~~~i~~l~~~l~~~~~~~~~~--~~~~~-~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~ 236 (264)
T PF07246_consen 160 KTQERENDRRNQILSHEISNLTNELSNLRNDIDKF--QERED-EKILHEELEARESGLRNESKWLEHELSDAKEDMIRLR 236 (264)
T ss_pred HhhchhhhhHHHHHHHHHHHhhhhHHHhhchhhhh--hhhhh-HHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556668889999888888888888777763222 11111 1111111111111 344455555555555555555
Q ss_pred HhhhhcccCCC
Q 024197 208 ENIAAVSFTAN 218 (271)
Q Consensus 208 ~ELsAwkFTpd 218 (271)
++....+-.|.
T Consensus 237 ~~~~~~~sv~~ 247 (264)
T PF07246_consen 237 NDISDFTSVPQ 247 (264)
T ss_pred hcccchhhHHH
Confidence 55554433333
No 185
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.93 E-value=3.9e+02 Score=28.60 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=34.0
Q ss_pred chhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHH
Q 024197 59 VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWH 96 (271)
Q Consensus 59 ~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~ 96 (271)
+..++.-.+|.-+..|..++..+...+....-.+.+|.
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~ 134 (670)
T KOG0239|consen 97 VVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAE 134 (670)
T ss_pred hHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhh
Confidence 45778888999999999999999999999999998887
No 186
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=46.67 E-value=6.5 Score=42.18 Aligned_cols=72 Identities=32% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhcccCCCchhH--HHHHHHHHhHHHHHHHHhhhhhc--ccchhhhHHHHHHHHHHHHHHhhhcC
Q 024197 200 DKKVKELEENIAAVSFTANSKMG--KALMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKSLNAELKSQFEG 271 (271)
Q Consensus 200 ~~kle~aq~ELsAwkFTpdS~~G--KrLmaKCR~LqeENEELGr~lse--gria~LE~eLAlqK~~~eELrk~~ee 271 (271)
++..+.+..+|+.++.--+...+ .-|.+....|+.||.+|.+.+.+ ..+..|........++++++++.+++
T Consensus 179 Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~lee 254 (859)
T PF01576_consen 179 EKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEE 254 (859)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 34444555566655544443333 45788888999999999998864 55667777777777888888877653
No 187
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=45.83 E-value=1.4e+02 Score=27.54 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHh-c------CCchHHHHHh---hhChhHHHHHHHHHHHHHHHHHHHHH
Q 024197 147 TFAKREQEIAELKSAVRDLKAQ-L------KPPLMQARRL---LLDPAIHEEFRRLKNLVEEKDKKVKE 205 (271)
Q Consensus 147 rLAtKEQEiqEl~sqi~dlK~~-~------~ps~~qlR~~---LlDPAVNlef~rLr~eLee~~~kle~ 205 (271)
.+..++.|+++++..+...... . ....+.++.. -.-+.......+|+.+|..-+...+.
T Consensus 88 kl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~ 156 (202)
T PF06818_consen 88 KLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREE 156 (202)
T ss_pred hhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHH
Confidence 3666777777777777775110 0 0111222221 12334556778899888876666553
No 188
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.78 E-value=2.3e+02 Score=30.52 Aligned_cols=44 Identities=32% Similarity=0.328 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc
Q 024197 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP 172 (271)
Q Consensus 129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps 172 (271)
.|++||.....=..-|..+...+-+|+.++..||+.|-.-..-+
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56666666666666667777888888889998888886655433
No 189
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.17 E-value=1.8e+02 Score=28.81 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhh---hCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL---LDP--AIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~L---lDP--AVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
.+-.|..+.++..++..++..||..++.-+.+..... -|| ++-.....|+.+|.+.+.+++.+++++..
T Consensus 28 ~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 28 DLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888877766554444321 221 33345677777888888888777766643
No 190
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.11 E-value=79 Score=24.20 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhH--HHHHHHHHhHHHHHHHHhhhhh
Q 024197 188 EFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG--KALMAKCKTLQEENDEIGRQNE 244 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G--KrLmaKCR~LqeENEELGr~ls 244 (271)
++..|+..|+....++.-.+.++..+.=--++-.. ......|..|..||+.|.+.+.
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777766666666666544444222 2255667778888888777643
No 191
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=44.89 E-value=88 Score=26.07 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=57.4
Q ss_pred HHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhh
Q 024197 71 LQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAK 150 (271)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAt 150 (271)
+.-|..-...++.+|+.|+.-=. ..-|.+|...=..++.......-+.- ....++.
T Consensus 19 ~~gC~~K~~~Ie~qI~~Ak~~gN-----------------------~~rv~GLe~AL~~v~~~Ctd~~l~~e-~q~ki~~ 74 (115)
T PF06476_consen 19 LTGCEAKEQAIEKQIEYAKAHGN-----------------------QHRVAGLEKALEEVKAHCTDEGLKAE-RQQKIAE 74 (115)
T ss_pred cCcHHHHHHHHHHHHHHHHHcCC-----------------------HHHHHHHHHHHHHHHhhcCCchhhHH-HHHHHHH
Confidence 55677777777777777764211 11223333333333333221111110 1345778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 151 REQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 151 KEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
+++++.+....|.+.+...+| .+|...++||.+++.+|.
T Consensus 75 ~~~kV~ere~eL~eA~~~G~~----------------------~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 75 KQQKVAEREAELKEAQAKGDS----------------------DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCH----------------------HHHHHHHHHHHHHHHHHh
Confidence 899999999999998888775 567777778888887775
No 192
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=44.27 E-value=1e+02 Score=33.37 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhH
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G 222 (271)
+..|-.+-.++++|++.+++.|+-++ ++++|
T Consensus 190 ltalEkeq~e~E~K~R~se~l~qevn---~~kv~ 220 (861)
T KOG1899|consen 190 LTALEKEQNETEKKLRLSENLMQEVN---QSKVG 220 (861)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHH---HHHHH
Confidence 34556777888999999999998887 66555
No 193
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=44.09 E-value=75 Score=27.41 Aligned_cols=35 Identities=9% Similarity=0.354 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHH
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK 223 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GK 223 (271)
+.+|+.++.+.+++++.+++++.+.+.+-+...++
T Consensus 68 waKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 68 WAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888887777666655443
No 194
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=43.99 E-value=1e+02 Score=27.39 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=28.3
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
++..+..-...+...+++++.|+.++++++..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~ 96 (322)
T TIGR01730 62 YQLALQAALAQLAAAEAQLELAQRSFERAERLVKR 96 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45556666778899999999999999999977654
No 195
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.57 E-value=2.4e+02 Score=25.11 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=43.6
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 137 AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 137 ~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
.+.+=.-|...+...+.++.++...|...+....++ .+=..|-.++.+.+.+++.++.+|...
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------------~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------------EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888888999999999998776554 222344467777777777788777744
No 196
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=43.37 E-value=2.6e+02 Score=25.58 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=27.1
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
+...+..-+..+...++.|..|+.++++++..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~ 129 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQREVDRYRSLFRD 129 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445566677888888999999999999977764
No 197
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=43.34 E-value=94 Score=22.99 Aligned_cols=46 Identities=26% Similarity=0.269 Sum_probs=34.9
Q ss_pred HHhhHhhHHHHHHHHHHHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 120 LQTLKSSEEMLKEQLEKAKKK-EAAFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 120 l~~Lk~sE~~LkeQl~e~krR-E~vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
+..|++.|-+++.+. +.... =+..-.+|+.++.|...|+++|.-++
T Consensus 3 ~~Rl~ELe~klkaer-E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 3 LLRLEELERKLKAER-EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHhH-HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888899988877 33332 34567789999999999999987664
No 198
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.91 E-value=1.9e+02 Score=23.89 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=20.0
Q ss_pred HHHHhhHHHHHhchhhhhhhHHHHHHHHHHH
Q 024197 62 GMILSLRESLQNCKDTLATCQLELEAAKSEI 92 (271)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei 92 (271)
-.|=.||+-++.++..+..++.+.+.|+.++
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666665
No 199
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=42.84 E-value=3.9e+02 Score=27.33 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=66.7
Q ss_pred HHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHH
Q 024197 119 YLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE 198 (271)
Q Consensus 119 ~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee 198 (271)
-.+.|......+++++..+.-..-.++..++..-.+++++...+.+=....-...++-..--+|--++.....++..+++
T Consensus 71 ~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~ 150 (448)
T COG1322 71 LIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQ 150 (448)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888887777777778888888888888888877776554433333233222333345555666655555
Q ss_pred -HHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 199 -KDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 199 -~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
+....++.. .+.+..+.++.+|.-|.+.+
T Consensus 151 ~~~~s~~~~~----------------~~~~~i~~~lg~~~~la~e~ 180 (448)
T COG1322 151 RIHESAEERS----------------TLLEEIDRLLGEIQQLAQEA 180 (448)
T ss_pred HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 333333332 25566677777766666544
No 200
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.67 E-value=2.6e+02 Score=25.40 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=63.9
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHH-------HHHHHHH
Q 024197 124 KSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEF-------RRLKNLV 196 (271)
Q Consensus 124 k~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef-------~rLr~eL 196 (271)
...-+..+.-|.+.++|- |.-+...-+.|+.+...-++..+..-.++....+.+. |.|..-+ ..|+..|
T Consensus 126 ~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~--~~i~~~L~~~~~kL~Dl~~~l 201 (264)
T PF06008_consen 126 QRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLA--EAIRDDLNDYNAKLQDLRDLL 201 (264)
T ss_pred HHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555788888994 6666666666666666666666555333333333221 1122222 3334444
Q ss_pred HHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhccc
Q 024197 197 EEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGE 247 (271)
Q Consensus 197 ee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegr 247 (271)
.++....+++..=..+. ...-..+-.|+..+.+.+.++...+..|+
T Consensus 202 ~eA~~~~~ea~~ln~~n-----~~~l~~~~~k~~~l~~~~~~~~~~L~~a~ 247 (264)
T PF06008_consen 202 NEAQNKTREAEDLNRAN-----QKNLEDLEKKKQELSEQQNEVSETLKEAE 247 (264)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443322222 12234577899999999999999988773
No 201
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=42.53 E-value=1.4e+02 Score=25.73 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=26.5
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 024197 180 LLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSF 215 (271)
Q Consensus 180 LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkF 215 (271)
.-|=+-|.+|..=|.++...+.++..++..|...+.
T Consensus 38 ~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A~i 73 (156)
T TIGR01461 38 LGDRSENADYQYGKKRLREIDRRVRFLTKRLENLKV 73 (156)
T ss_pred cCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcCEE
Confidence 446667788888888888888888888877765433
No 202
>PRK01156 chromosome segregation protein; Provisional
Probab=42.44 E-value=4.5e+02 Score=27.98 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 024197 192 LKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 192 Lr~eLee~~~kle~aq~ELsAw 213 (271)
++.++...+.+++.+..++...
T Consensus 641 ~~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 641 NKILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 203
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.36 E-value=3.5e+02 Score=29.19 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=34.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHH-------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIH-------EEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 142 ~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVN-------lef~rLr~eLee~~~kle~aq~ELs 211 (271)
..|-..+-.++.||..|.+.+..++.--. .+--++ ..|.+|+.+|.+.+.+.+++...|.
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r~~~----------~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRREVR----------DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777777777766654422 222233 3445666777777777777665553
No 204
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.34 E-value=5.4e+02 Score=28.90 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=63.4
Q ss_pred hhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHh---hhc-----ccCCCCCCCCChhhhHHHHHhhHhhHHHHH
Q 024197 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSS---FQN-----ELFIPPGTSPEPRLVINYLQTLKSSEEMLK 131 (271)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~---fq~-----e~~i~a~~~~~~~l~~~~l~~Lk~sE~~Lk 131 (271)
--|||-++--.+++|+...-+++.+-+.-+.+++...+. +.. ...++.-.+.-..+ .+..+..+.-.+.+.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~-~q~~e~~~t~~eel~ 740 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDL-LQGAEASKTQNEELN 740 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhH-HhHHHhccCChHHHH
Confidence 458999999999999999999999988888888766322 211 11233222222222 233344555566677
Q ss_pred HHHHHHHhHHH---HHHHHHhhHHHHHHHHHHHHHH
Q 024197 132 EQLEKAKKKEA---AFIVTFAKREQEIAELKSAVRD 164 (271)
Q Consensus 132 eQl~e~krRE~---vlv~rLAtKEQEiqEl~sqi~d 164 (271)
.++.+.++=+| .+...|..+.+=++..++...+
T Consensus 741 a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~ 776 (970)
T KOG0946|consen 741 AALSENKKLENDQELLTKELNKKNADIESFKATQRS 776 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 77766666553 3444455556666666665443
No 205
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.31 E-value=2.4e+02 Score=25.91 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc--hhHH----HHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHH
Q 024197 188 EFRRLKNLVEEKDKKVKELEENIAAVSFTANS--KMGK----ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSL 261 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~ELsAwkFTpdS--~~GK----rLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~ 261 (271)
+.-+||.+|.+.+.++..++.+-..-.-..++ .+=| .|+.--+.-..++++ |+......+..+.-.|...+.+
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~-~~~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE-GRSKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCHHHHHHHHHHHHHH
Confidence 66789999999999999999887763112222 2222 233312222223333 7777778888888888888888
Q ss_pred HHHHHhh
Q 024197 262 NAELKSQ 268 (271)
Q Consensus 262 ~eELrk~ 268 (271)
|..|..-
T Consensus 176 V~~Le~~ 182 (195)
T PF12761_consen 176 VDGLESH 182 (195)
T ss_pred HHHHHHH
Confidence 8887653
No 206
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.18 E-value=5.9e+02 Score=29.25 Aligned_cols=192 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHH
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEA 142 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~ 142 (271)
.|-.|.+-|..+...|+....++.+....+.... +.-..+|....-.| ....+...+..+.....+..+.+.
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~---~e~~~~Ps~~dL~~-----A~~~l~~A~~~~~~a~~~l~~a~~ 814 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALA---DELAGAPSDRSLRA-----AHRRAAEAERQAESAERELARAAR 814 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCc-hHHHHHhh---------hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 143 AFIVTFAKREQEIAELKSAVRDLKAQLKPP-LMQARRLL---------LDPAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 143 vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps-~~qlR~~L---------lDPAVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
.+-......++--+.+...-.++.....+. -.+++..+ +-++++.+... ...+......++.++.++..
T Consensus 815 ~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A-~~~~~~a~~~le~ae~~l~~ 893 (1353)
T TIGR02680 815 KAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHA-ATRAAEQRARAARAESDARE 893 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_pred cccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 213 VSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 213 wkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
....-.. +-.+...+..+.+.|-..+..- +..|..+|...+...+++.+.+
T Consensus 894 ~~~e~~~-----~~~e~~~a~~~l~~l~e~l~~~-~eel~a~L~e~r~rL~~l~~el 944 (1353)
T TIGR02680 894 AAEDAAE-----ARAEAEEASLRLRTLEESVGAM-VDEIRARLAETRAALASGGREL 944 (1353)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
No 207
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=42.16 E-value=5e+02 Score=29.27 Aligned_cols=55 Identities=25% Similarity=0.475 Sum_probs=30.8
Q ss_pred CCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 024197 104 FIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDL 165 (271)
Q Consensus 104 ~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dl 165 (271)
|-|.|.+|- +-+.+..||.... ++.++.+....|=.-|..+..+...+..-=+++
T Consensus 174 yKP~GrnP~---iNq~l~klkq~~~----ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~el 228 (984)
T COG4717 174 YKPSGRNPQ---INQLLEKLKQERN----EIDEAEKEYATYHKLLESRRAEHARLAELRSEL 228 (984)
T ss_pred cCCCCCChh---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567776653 3456677775554 455566666665555555555555444433333
No 208
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=42.03 E-value=3.2e+02 Score=26.17 Aligned_cols=109 Identities=26% Similarity=0.323 Sum_probs=0.0
Q ss_pred HhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCch---HHHHHhhhChhHHHHHHHHHHHHH
Q 024197 121 QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL---MQARRLLLDPAIHEEFRRLKNLVE 197 (271)
Q Consensus 121 ~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~---~qlR~~LlDPAVNlef~rLr~eLe 197 (271)
..|......+.+....+..-..+++-..+ .+..+..+-.+||.+.+.-+ .+.-.+|.-. |.+|...|.+++
T Consensus 174 AKl~q~~~~~~~e~~k~~~~~~~~l~~~~----~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kS--Ne~F~tfk~Eme 247 (309)
T PF09728_consen 174 AKLEQQQEEAEQEKEKAKQEKEILLEEAA----QVQTLKETEKELREQLNLYSEKFEEFQDTLNKS--NEVFETFKKEME 247 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhcccCCCc-----------------------hhHHHHHHHHHhHHHH
Q 024197 198 EKDKKVKELEENIAAVSFTANS-----------------------KMGKALMAKCKTLQEE 235 (271)
Q Consensus 198 e~~~kle~aq~ELsAwkFTpdS-----------------------~~GKrLmaKCR~LqeE 235 (271)
.+.++.+.+.-+-.+|+=--+. .-=.+|-.-||.||.|
T Consensus 248 km~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 248 KMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 209
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=41.89 E-value=18 Score=29.61 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=24.4
Q ss_pred HHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 205 ELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 205 ~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
..-++|+.. ||+. ||+++|.|+.+.+.||
T Consensus 50 ~~~~eLs~L--t~~~-----L~~~Ik~L~~~aYqLG 78 (95)
T PF10044_consen 50 EKMNELSSL--TPDQ-----LIEKIKKLQDEAYQLG 78 (95)
T ss_pred HHHHHHHcC--CHHH-----HHHHHHHHHHHHHHHh
Confidence 455677766 7776 9999999999999999
No 210
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=41.66 E-value=3.8e+02 Score=26.89 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 153 QEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 153 QEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
..++.|+.+|.+++.........+=+.-..|.|.......+.+|+.+.+.++.....+.
T Consensus 282 ~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~ 340 (473)
T PF14643_consen 282 ALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTE 340 (473)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777776642222334445555699999999999999999999988865553
No 211
>PF10562 CaM_bdg_C0: Calmodulin-binding domain C0 of NMDA receptor NR1 subunit; InterPro: IPR018882 This is a very short highly conserved domain that is C-terminal to the cytosolic transmembrane region IV of the NMDA-receptor 1. It has been shown to bind Calmodulin-Calcium with high affinity. The ionotropic N-methyl-D-aspartate receptor (NMDAR) is a major source of calcium flux into neurons in the brain and plays a critical role in learning, memory, neural development, and synaptic plasticity. Calmodulin (CaM) regulates NMDARs by binding tightly to the C0 and C1 regions of their NR1 subunit. The conserved tryptophan is considered to be the anchor residue [].
Probab=41.46 E-value=31 Score=22.99 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024197 82 QLELEAAKSEIQKWHSSF 99 (271)
Q Consensus 82 ~~~l~~a~~ei~kW~~~f 99 (271)
|-+++-|+..+++|+-.+
T Consensus 11 qk~~elAr~a~dkWR~~i 28 (29)
T PF10562_consen 11 QKQLELARHAADKWRGNI 28 (29)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 567899999999999654
No 212
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.87 E-value=71 Score=25.78 Aligned_cols=96 Identities=26% Similarity=0.282 Sum_probs=48.0
Q ss_pred HHhchhhhhhhHHHHHHHHHHHHHHHHh-hhcccCCCCCCCC-------ChhhhHHHHHhhHhhHHHHHHHHHHHHhHHH
Q 024197 71 LQNCKDTLATCQLELEAAKSEIQKWHSS-FQNELFIPPGTSP-------EPRLVINYLQTLKSSEEMLKEQLEKAKKKEA 142 (271)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~ei~kW~~~-fq~e~~i~a~~~~-------~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~ 142 (271)
|+..-+.|.....+++.+...|..-... -..+..||-|.+. +|.-+.=.|-.==-.|-++.+=..-..+|-.
T Consensus 18 l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~~r~~ 97 (129)
T cd00584 18 LQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIE 97 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHH
Confidence 3444444555556666667776666531 1224445544442 2211100000000012223333345667777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 143 AFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 143 vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
.+-..+...++++..+..++..+-
T Consensus 98 ~l~~~~~~l~~~l~~l~~~~~~~~ 121 (129)
T cd00584 98 ELTKQIEKLQKELAKLKDQINTLE 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888887777777663
No 213
>PRK00153 hypothetical protein; Validated
Probab=40.73 E-value=26 Score=28.06 Aligned_cols=32 Identities=13% Similarity=0.357 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCch
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSK 220 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~ 220 (271)
|..|-++.++.+.+++.+|.+|....|+..|.
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~s~ 36 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEGEAG 36 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEEC
Confidence 56778899999999999999999999988874
No 214
>PLN02678 seryl-tRNA synthetase
Probab=40.56 E-value=1.5e+02 Score=30.01 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=42.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhCh----hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDP----AIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDP----AVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
+-.|-.+.++..++..++..||..++--+.+......++ ++-.+...|+.++...+.+++.++++|..
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666555444443322222 23335677888888888888888877754
No 215
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.48 E-value=3e+02 Score=25.43 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=47.9
Q ss_pred HHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchh--H---HHHHHHHHhHHHHHHHHhhhhhcc
Q 024197 177 RRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKM--G---KALMAKCKTLQEENDEIGRQNEEG 246 (271)
Q Consensus 177 R~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~--G---KrLmaKCR~LqeENEELGr~lseg 246 (271)
-+.|.=|.+-..|..|+.++..++.+++..+.-.+-+ ||.-.- - .+-..-||+-..=--|+--.+++|
T Consensus 113 ~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v--tpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~ 185 (201)
T KOG4603|consen 113 SSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV--TPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEG 185 (201)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3457789999999999999999999999999887777 777532 2 333444555544444444455555
No 216
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=40.21 E-value=49 Score=31.05 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhh
Q 024197 232 LQEENDEIGRQN 243 (271)
Q Consensus 232 LqeENEELGr~l 243 (271)
|++||++|-+.+
T Consensus 96 l~~EN~rLr~LL 107 (283)
T TIGR00219 96 LKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 217
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.95 E-value=1.5e+02 Score=29.60 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--------C------------CCchhHHHHHHHHHhHHHHHHHHhhh
Q 024197 183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSF--------T------------ANSKMGKALMAKCKTLQEENDEIGRQ 242 (271)
Q Consensus 183 PAVNlef~rLr~eLee~~~kle~aq~ELsAwkF--------T------------pdS~~GKrLmaKCR~LqeENEELGr~ 242 (271)
..+...+..|+.+|.+.+.++..+++++.+..- . ++...-..+.+-.....++..++...
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777666666666655544321 0 00112234555555555566666533
Q ss_pred hhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 243 NEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 243 lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
+..|+.++..++....+|++++
T Consensus 147 -----~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 147 -----DREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655555543
No 218
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=39.88 E-value=2.4e+02 Score=24.07 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=51.2
Q ss_pred hHhhHHHHHHHHHHHHhHH---HHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH
Q 024197 123 LKSSEEMLKEQLEKAKKKE---AAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (271)
Q Consensus 123 Lk~sE~~LkeQl~e~krRE---~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~ 199 (271)
.-..++++|+-=+.....| .-|..++...|.++..+..+|.+++....-+.. .. .-.+ +.+.-|+-|=.+|+.+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~-~~-~~~E-~l~rriq~LEeele~a 92 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK-RK-SNAE-QLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HH-HhHH-HHHhhHHHHHHHHHHH
Confidence 3344444444333333333 346667788888888888888888776543321 11 1122 6666677777777777
Q ss_pred HHHHHHHHHhhhh
Q 024197 200 DKKVKELEENIAA 212 (271)
Q Consensus 200 ~~kle~aq~ELsA 212 (271)
+.+|..+...|.-
T Consensus 93 e~~L~e~~ekl~e 105 (143)
T PF12718_consen 93 EKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655543
No 219
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.70 E-value=3.1e+02 Score=25.33 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=80.9
Q ss_pred CCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCch-------------
Q 024197 107 PGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPL------------- 173 (271)
Q Consensus 107 a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~------------- 173 (271)
..+.|. +++..+|...++.=.++++.+...--+..-+-+++......+.++..+....-...+...
T Consensus 21 k~EDp~-~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~ 99 (225)
T COG1842 21 KAEDPE-KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLED 99 (225)
T ss_pred hhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334444 667777776666666666666666666666666666666666666655444333322221
Q ss_pred --HHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc----------------CCCchhHHHHHHHHHhHHHH
Q 024197 174 --MQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSF----------------TANSKMGKALMAKCKTLQEE 235 (271)
Q Consensus 174 --~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkF----------------TpdS~~GKrLmaKCR~LqeE 235 (271)
..++..+..- ..-..+||..+...+.++.+++..+.+++= ...|...-....+.+.-+++
T Consensus 100 ~~~~~~~~~~~~--~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee 177 (225)
T COG1842 100 LAKALEAELQQA--EEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEE 177 (225)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 1111111111 111234444444444444444433322221 22223445677788888888
Q ss_pred HHHHhhhhh---cccchhhhHHHHHHH
Q 024197 236 NDEIGRQNE---EGETHQLSVKLALQK 259 (271)
Q Consensus 236 NEELGr~ls---egria~LE~eLAlqK 259 (271)
-|.-+.... .+....|+.+++...
T Consensus 178 ~ea~a~~~~el~~~~~~dl~~e~a~~~ 204 (225)
T COG1842 178 REARAEAAAELAEGSGDDLDKEFAQAG 204 (225)
T ss_pred HHHHHHHhHHhhccCcccHHHHHHHhc
Confidence 777776666 577788888777654
No 220
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=39.67 E-value=3.7e+02 Score=26.24 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=48.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhcCCc-hHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch
Q 024197 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKPP-LMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSK 220 (271)
Q Consensus 142 ~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps-~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~ 220 (271)
..+..+|..+.+.+..+...+..+ .|. ...-...-+|-.-+.+-..++..|...+.+++.+...|.+. +|...
T Consensus 323 ~a~~~~L~~~~~~L~~l~~rL~~l----sP~~~L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~~l--sP~~~ 396 (438)
T PRK00286 323 RALERRLRLAKQRLERLSQRLQQQ----NPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEAL--SPLAT 396 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChhH
Confidence 345566777777777776665432 332 22223445555666677778888888999999999999887 77653
No 221
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.64 E-value=6.4e+02 Score=29.00 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=70.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Q 024197 76 DTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEI 155 (271)
Q Consensus 76 ~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEi 155 (271)
..|.+|..-|..+..++-+|++.|..+ ..+|.+ +..||.....+=..|-..+.+.|.|.
T Consensus 488 ~~iknlnk~L~~r~~elsrl~a~~~el-------------keQ~kt--------~~~qye~~~~k~eeLe~~l~~lE~EN 546 (1195)
T KOG4643|consen 488 NQIKNLNKSLNNRDLELSRLHALKNEL-------------KEQYKT--------CDIQYELLSNKLEELEELLGNLEEEN 546 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH--------HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345666677777777888888666432 122221 22234444444455666788999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhhhC-hhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccc
Q 024197 156 AELKSAVRDLKAQLKPPLMQARRLLLD-PAIHEEFRRLKNLVEEKDKKVKELEENI-AAVSF 215 (271)
Q Consensus 156 qEl~sqi~dlK~~~~ps~~qlR~~LlD-PAVNlef~rLr~eLee~~~kle~aq~EL-sAwkF 215 (271)
..|..+|+-|+.. .-..++|.+.+-| -.+|.+...+=..|.+.+...+.+..+. +-..|
T Consensus 547 a~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~ 607 (1195)
T KOG4643|consen 547 AHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLF 607 (1195)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999885 2233444444332 3445555666666666666666666554 44445
No 222
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=39.49 E-value=3.5e+02 Score=25.89 Aligned_cols=72 Identities=17% Similarity=0.337 Sum_probs=57.4
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHH
Q 024197 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKN 194 (271)
Q Consensus 115 l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~ 194 (271)
.+...|..+..-=+++++++.....-|+-|-..|-.|-+|+......++.|..+ -||.-.+|.+|-.
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v-------------RPAfmdEyEklE~ 232 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV-------------RPAFMDEYEKLEE 232 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ChHHHHHHHHHHH
Confidence 344455566666677888899999999999999999999999999998888544 4777788888888
Q ss_pred HHHHH
Q 024197 195 LVEEK 199 (271)
Q Consensus 195 eLee~ 199 (271)
+|...
T Consensus 233 EL~~l 237 (267)
T PF10234_consen 233 ELQKL 237 (267)
T ss_pred HHHHH
Confidence 87654
No 223
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=38.84 E-value=96 Score=30.05 Aligned_cols=26 Identities=42% Similarity=0.399 Sum_probs=16.0
Q ss_pred ChhhhHHHHHhhHhhHHHHHHHHHHH
Q 024197 112 EPRLVINYLQTLKSSEEMLKEQLEKA 137 (271)
Q Consensus 112 ~~~l~~~~l~~Lk~sE~~LkeQl~e~ 137 (271)
+.......+++|+--=+.|+++++..
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777766666666666443
No 224
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=38.53 E-value=3.9e+02 Score=26.22 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 188 EFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
....++.++...+..+.+++.++...
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666777777777776666553
No 225
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=38.29 E-value=1.1e+02 Score=24.31 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchh
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQ 250 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~ 250 (271)
+.+++.+|+.++.|....|..|..+ --+.-+.||.|+-.++.+-++.+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~L--------------e~qk~E~EN~EIv~~VR~~~mtp 50 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKEL--------------EAQKTEAENLEIVQMVRSMKMTP 50 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCH
Confidence 4678888888888888888766655 34556778888888887766654
No 226
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.29 E-value=2.2e+02 Score=23.33 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 134 l~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
.....+|-..+-..+...++++.++..++..+.
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555553
No 227
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.95 E-value=2.4e+02 Score=23.49 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 024197 186 HEEFRRLKNLV 196 (271)
Q Consensus 186 Nlef~rLr~eL 196 (271)
..+|.+|+..|
T Consensus 139 e~E~~kLk~rL 149 (151)
T PF11559_consen 139 EREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHh
Confidence 45666666544
No 228
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.72 E-value=1.4e+02 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=13.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHh
Q 024197 146 VTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 146 ~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
..+.....++.++...+..++..
T Consensus 341 ~~~~~~~~~l~~l~~~l~~l~~~ 363 (451)
T PF03961_consen 341 EELEELKEELEKLKKNLKKLKKL 363 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444456666666666666553
No 229
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.54 E-value=5.5e+02 Score=27.60 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024197 151 REQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEEN 209 (271)
Q Consensus 151 KEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~E 209 (271)
+||.-.+|-.--++|+.+|+- +..+.+||.....|..|-.+...+++.+..++.+
T Consensus 389 lEqkkEec~kme~qLkkAh~~----~ddar~~pe~~d~i~~le~e~~~y~de~~kaqae 443 (654)
T KOG4809|consen 389 LEQKKEECSKMEAQLKKAHNI----EDDARMNPEFADQIKQLEKEASYYRDECGKAQAE 443 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677777653 6788999999999999988888888888888743
No 230
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.52 E-value=1.5e+02 Score=25.59 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHH--HHHHHHHhHHHHHHHHhhhhhcccc
Q 024197 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK--ALMAKCKTLQEENDEIGRQNEEGET 248 (271)
Q Consensus 190 ~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GK--rLmaKCR~LqeENEELGr~lsegri 248 (271)
.....+..+.+.++.+++.|+++. +++..-.| +|=-|+.+|.+|.+++..+.+..+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI--SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888889999988 66665443 4677788889999998888776654
No 231
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.11 E-value=2.6e+02 Score=23.78 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=7.6
Q ss_pred HHHHhHHHHHHHHhhhh
Q 024197 227 AKCKTLQEENDEIGRQN 243 (271)
Q Consensus 227 aKCR~LqeENEELGr~l 243 (271)
..|+.++++-+++...+
T Consensus 151 ~~~~~~~~~~~~~~~~~ 167 (191)
T PF04156_consen 151 KELQDSREEVQELRSQL 167 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 232
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.09 E-value=3e+02 Score=24.43 Aligned_cols=49 Identities=20% Similarity=0.422 Sum_probs=27.7
Q ss_pred HHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 120 LQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 120 l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+..++.--+.++..+...+.+=.-+-.++..+..++.+++.+++..+..
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555444455556666666666666666666554
No 233
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=36.92 E-value=11 Score=38.53 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHH
Q 024197 74 CKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQ 153 (271)
Q Consensus 74 ~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQ 153 (271)
+...|+.+|..|......++. ||.-+-.-+-..-+++.+|=.+|-+||++|++|..+.-..=+-++.||-+-|-
T Consensus 374 YEqEI~~LkErL~~S~rkLeE------yErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEe 447 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEE------YERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEE 447 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhh
Confidence 445666666666665555543 33333344445668889999999999999999997766666677889998888
Q ss_pred HHHHHHH
Q 024197 154 EIAELKS 160 (271)
Q Consensus 154 EiqEl~s 160 (271)
|+..=+.
T Consensus 448 ELrre~~ 454 (495)
T PF12004_consen 448 ELRREHA 454 (495)
T ss_dssp -------
T ss_pred hhhhhHH
Confidence 8765444
No 234
>PRK11020 hypothetical protein; Provisional
Probab=36.38 E-value=1.1e+02 Score=26.34 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=54.4
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRR 191 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~r 191 (271)
-++|+.|-.-=..++.++..+..|...- .++...+|+..+...|+.+|..+.-..+.=++.+.|=..+..|++
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~--~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK 76 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAE--KYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITK 76 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccH
Confidence 4567777777777788887777776654 367778899999999999998877666666777777766666553
No 235
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=36.17 E-value=6.1e+02 Score=27.76 Aligned_cols=144 Identities=17% Similarity=0.287 Sum_probs=91.6
Q ss_pred HhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhH
Q 024197 72 QNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKR 151 (271)
Q Consensus 72 ~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtK 151 (271)
+.-..++..||.+| -+..++.+-+..+.+..+-..+... -+.....+.+|..--+.+.-.+..++..---+..++.+.
T Consensus 70 q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~ 147 (775)
T PF10174_consen 70 QKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQ 147 (775)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888999 8888888887766666554332223 555667777777766777777777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHhcC---Cc------hHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccCCCc
Q 024197 152 EQEIAELKSAVRDLKAQLK---PP------LMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI-AAVSFTANS 219 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~---ps------~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL-sAwkFTpdS 219 (271)
.+++...-..|.-|..+.. ++ .+....-+.|.. ..+.+|...++...+....++.+| ....-.|++
T Consensus 148 q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e--~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~ 223 (775)
T PF10174_consen 148 QQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAE--ARIMRLESLLERKEKEHMEAREQLHRRLQMERDD 223 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCc
Confidence 8888888777777766431 11 111111222322 233677777777777776555444 333445554
No 236
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=36.08 E-value=6.4e+02 Score=27.95 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024197 188 EFRRLKNLVEEKDKKVKELEE 208 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~ 208 (271)
.+..|+.+|..++..+..++.
T Consensus 778 ~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777776666655
No 237
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=35.84 E-value=2.1e+02 Score=27.01 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHH----HHHhhhChhHHHHHHHHHHHHHHHHHHHH
Q 024197 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQ----ARRLLLDPAIHEEFRRLKNLVEEKDKKVK 204 (271)
Q Consensus 129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~q----lR~~LlDPAVNlef~rLr~eLee~~~kle 204 (271)
..++.+.....|=+-+...|+..|.+|.+-..+|..+...+...+.. -+..-.+..|-..|.+=..||.+.+.+++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777778888999999999999999998885543222111 12223334677777877888888888777
Q ss_pred HHH
Q 024197 205 ELE 207 (271)
Q Consensus 205 ~aq 207 (271)
.+|
T Consensus 257 ~Lq 259 (259)
T PF08657_consen 257 ELQ 259 (259)
T ss_pred hcC
Confidence 653
No 238
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.50 E-value=2.2e+02 Score=22.42 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=46.7
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH
Q 024197 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (271)
Q Consensus 122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~ 199 (271)
.||.-=+.+-+++...+..-.-|-..+++--+||+.++..|-+|=..|. +++..+ -.+|.+||.+|+..
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~----kmK~~Y-----EeEI~rLr~eLe~r 76 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR----KMKQQY-----EEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHHhh
Confidence 3343334444444455555556667788889999999999999977765 345544 56888898888753
No 239
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=35.38 E-value=2.1e+02 Score=22.16 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=34.1
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 024197 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDL 165 (271)
Q Consensus 122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dl 165 (271)
..+++=..|+..+...+++++.|-++...+.+.+..+-.++..|
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444556777888888888888888888888888888887765
No 240
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=35.04 E-value=5.3e+02 Score=26.68 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 186 Nlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
..++.=||..|..+++++++...+=..-. -.|-..++.|.+-|..|+..+
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~--------~~L~~qi~~L~~~n~~i~~ea 188 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDSFGKEAQER--------HTLAHEIRNLQQLNAQMAQEA 188 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 45566688888888888887664322211 236666777777777666543
No 241
>PRK12704 phosphodiesterase; Provisional
Probab=34.73 E-value=5.3e+02 Score=26.55 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=20.1
Q ss_pred HhhHHHHHHHHHHHHhHHHHHHH---HHhhHHHHHHHHHHHHHHHHHh
Q 024197 124 KSSEEMLKEQLEKAKKKEAAFIV---TFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 124 k~sE~~LkeQl~e~krRE~vlv~---rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
..-|+.|.+......+||.-|.. .|..+++++.+....+..++..
T Consensus 92 ~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~ 139 (520)
T PRK12704 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444442 2344445555555554444433
No 242
>PF15259 GTSE1_N: G-2 and S-phase expressed 1
Probab=34.66 E-value=26 Score=30.67 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=20.8
Q ss_pred CCCCC-CCCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccccchh
Q 024197 6 HLDDD-DDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKV 52 (271)
Q Consensus 6 ~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (271)
.+.|+ |||++-++.. +..+.+|||+-.|++-+-+-+-
T Consensus 4 lL~DEkfDFDlslSps----------ss~e~eeddeVf~gPv~hkerc 41 (141)
T PF15259_consen 4 LLADEKFDFDLSLSPS----------SSNEEEEDDEVFFGPVGHKERC 41 (141)
T ss_pred cccccccccCcccCCc----------ccCCcccCcceeecCCCcccce
Confidence 34444 9998888733 1222255556667776655443
No 243
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.54 E-value=7.7e+02 Score=28.40 Aligned_cols=95 Identities=24% Similarity=0.301 Sum_probs=51.0
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHH---HHHHH-------HhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHH
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSE---IQKWH-------SSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKE 132 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~e---i~kW~-------~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~Lke 132 (271)
+|=.|-..+-....-|..+..+.++++.+ |-+-+ ..||.+ | ++....-..-...++.++.-...-++
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~--i-~~n~q~r~~~l~~l~~~~~ki~e~~~ 342 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQ--I-TGNEQQRNLALHVLQKVKDKIEEKKD 342 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH--h-hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45555555555555555566655555544 21111 223332 2 33333334444555555555544444
Q ss_pred HHH-------HHHhHHHHHHHHHhhHHHHHHHHHH
Q 024197 133 QLE-------KAKKKEAAFIVTFAKREQEIAELKS 160 (271)
Q Consensus 133 Ql~-------e~krRE~vlv~rLAtKEQEiqEl~s 160 (271)
.|. .....|+.+-.||+..+|+.+++-.
T Consensus 343 EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~ 377 (1200)
T KOG0964|consen 343 ELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLA 377 (1200)
T ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4455678888888888887766643
No 244
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=34.47 E-value=8.1e+02 Score=28.66 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=28.1
Q ss_pred HHhhHhhHHHHHH-HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 120 LQTLKSSEEMLKE-QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 120 l~~Lk~sE~~Lke-Ql~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+..++..+..|++ |..-++..=+....+++..+.+++++.+.+++++..
T Consensus 474 i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~ee 523 (1317)
T KOG0612|consen 474 IEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEE 523 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555552 433344444555556777777777777777766544
No 245
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=34.44 E-value=1.1e+02 Score=28.67 Aligned_cols=91 Identities=31% Similarity=0.439 Sum_probs=56.5
Q ss_pred hhHHHHHhc-hhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197 66 SLRESLQNC-KDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (271)
Q Consensus 66 ~lr~~l~~~-~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl 144 (271)
.+|.-|+.. +...+.+++|-|.-+.+|+|-|++|-.| + ...+.+-+|..| |.+.+.-++..-+-+ +.+|.-
T Consensus 105 kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~e--i-~~~~a~~rLdLN-LEkgr~~d~~~~~~l---~~~e~s- 176 (220)
T KOG3156|consen 105 KIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHE--I-SKTTAEFRLDLN-LEKGRIKDESSSHDL---QIKEIS- 176 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-Hhcchhceeecc-hhhccccchhhhcch---hHhHHH-
Confidence 445444443 2345667788888888888888888877 3 334455555443 334444444433333 223333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+..++||..++++|.+.|.+
T Consensus 177 ----~kId~Ev~~lk~qi~s~K~q 196 (220)
T KOG3156|consen 177 ----TKIDQEVTNLKTQIESVKTQ 196 (220)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999998876
No 246
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=34.31 E-value=2.2e+02 Score=24.99 Aligned_cols=95 Identities=17% Similarity=0.291 Sum_probs=51.0
Q ss_pred HHHHHhhHhhHHHHHHHHHH-HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQLEK-AKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNL 195 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e-~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~e 195 (271)
..+...+...+.++.+--.. .....+-.+.+|...+.++-.++..+...+.....-...-.....++.....|..+...
T Consensus 121 ~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (292)
T PF01544_consen 121 DDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDR 200 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 34444555555555443222 25566677778888888888877777776555310000001233444544556666666
Q ss_pred HHHHHHHHHHHHHhhh
Q 024197 196 VEEKDKKVKELEENIA 211 (271)
Q Consensus 196 Lee~~~kle~aq~ELs 211 (271)
+.......+..++.+.
T Consensus 201 ~~~~~~~~~~~~~~~~ 216 (292)
T PF01544_consen 201 IERLLERAESLRERLE 216 (292)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
No 247
>smart00338 BRLZ basic region leucin zipper.
Probab=33.68 E-value=94 Score=22.52 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=22.6
Q ss_pred HHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 024197 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (271)
Q Consensus 224 rLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~ 262 (271)
-|=.++..|..+|.+|...+ ..|+.++...+..+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~-----~~l~~e~~~lk~~~ 63 (65)
T smart00338 30 ELERKVEQLEAENERLKKEI-----ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 36667777888888877444 56666666666544
No 248
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=33.25 E-value=4.1e+02 Score=24.86 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=44.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC-hhhhHHHHHhhHhhHHHHHHHH
Q 024197 75 KDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPE-PRLVINYLQTLKSSEEMLKEQL 134 (271)
Q Consensus 75 ~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~-~~l~~~~l~~Lk~sE~~LkeQl 134 (271)
+.+-.....+|+.|..-+.+..+.|.+...-|..++.. +..+.+.|..++.-|.=|+--+
T Consensus 8 ~~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll 68 (281)
T PF12018_consen 8 PATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRILL 68 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888999999999998888876655555555 5778889999988887665433
No 249
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=33.22 E-value=2.1e+02 Score=21.37 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=33.5
Q ss_pred CCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHH----HHHHhhhc
Q 024197 57 PGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQ----KWHSSFQN 101 (271)
Q Consensus 57 ~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~----kW~~~fq~ 101 (271)
.||..+.+.+.+..+..-...|..++.++..+..++. .|..+++.
T Consensus 40 ~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 40 QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888888888888774 45544443
No 250
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.18 E-value=74 Score=28.95 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhh
Q 024197 257 LQKSLNAELKSQ 268 (271)
Q Consensus 257 lqK~~~eELrk~ 268 (271)
..+..+++||+.
T Consensus 97 ~l~~en~~L~~l 108 (276)
T PRK13922 97 QLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 251
>PF10796 Anti-adapt_IraP: Sigma-S stabilisation anti-adaptor protein ; InterPro: IPR019732 This entry is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions []. ; GO: 0005737 cytoplasm
Probab=32.86 E-value=1.4e+02 Score=24.14 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=34.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHH
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE 198 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee 198 (271)
++++||.+|.|-.++.+||..+...-. .+=+++-+..++.++.....-++.
T Consensus 8 lL~KlA~~e~esKeL~AqVEAleivit----ALL~~l~~~~~~~~i~~I~~Ai~~ 58 (87)
T PF10796_consen 8 LLAKLAEKEAESKELTAQVEALEIVIT----ALLRTLDQGGRQEMIESIEKAIED 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCcchHHHHHHHHHHHHHH
Confidence 688999999999999999998865521 233334555666655555444443
No 252
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=32.76 E-value=4.9e+02 Score=25.58 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCchhHHHHHHHHHhHHHHHHHHh
Q 024197 217 ANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 217 pdS~~GKrLmaKCR~LqeENEELG 240 (271)
++++.|+.++.+|..|.....+.-
T Consensus 424 ~~~~~~~~~~~~~~~l~~~l~~~e 447 (579)
T PF08385_consen 424 LDSPEGKELKQKYNELLKKLDEYE 447 (579)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777776666543
No 253
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.59 E-value=4.5e+02 Score=25.14 Aligned_cols=44 Identities=27% Similarity=0.439 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 125 SSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 125 ~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
.....+.+++....+-|..++..|-..|+|-.++..++..+...
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888999999999999999999999988887554
No 254
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=32.17 E-value=3.5e+02 Score=23.95 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=12.2
Q ss_pred hHhhHHHHHHHHHHHHhHHHHHHHH
Q 024197 123 LKSSEEMLKEQLEKAKKKEAAFIVT 147 (271)
Q Consensus 123 Lk~sE~~LkeQl~e~krRE~vlv~r 147 (271)
|..-|+.|........+||..|-.+
T Consensus 87 l~~rE~~L~~~~~~L~~~e~~l~~~ 111 (201)
T PF12072_consen 87 LQQREEQLDRRLEQLEKREEELEKK 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444
No 255
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=32.15 E-value=8.2e+02 Score=28.03 Aligned_cols=72 Identities=28% Similarity=0.343 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh--hcccchhhhHHHHHHHHHH
Q 024197 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN--EEGETHQLSVKLALQKSLN 262 (271)
Q Consensus 185 VNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l--segria~LE~eLAlqK~~~ 262 (271)
++-....+..+++..+.+++.+++.++. |-.+...+.++-.+.+... -+|++..|...+.......
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~------------L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINS------------LREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443332 4444444444444444333 4477788888888887777
Q ss_pred HHHHhh
Q 024197 263 AELKSQ 268 (271)
Q Consensus 263 eELrk~ 268 (271)
..|++.
T Consensus 460 ~~lk~~ 465 (1074)
T KOG0250|consen 460 KDLKKT 465 (1074)
T ss_pred HHHHhc
Confidence 777653
No 256
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=31.97 E-value=3.8e+02 Score=24.08 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=28.4
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 134 l~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
..+++.|=.-|-..|.+--+++.++...|..++..
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 55677777888888888888888888888888665
No 257
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.93 E-value=8.3e+02 Score=28.01 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=19.3
Q ss_pred HHHhchhhhhhhHHHHHHHHHHHHHHHHhhh
Q 024197 70 SLQNCKDTLATCQLELEAAKSEIQKWHSSFQ 100 (271)
Q Consensus 70 ~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq 100 (271)
-|.+-+..+-.|+..+.+.+..+.+|+.-+.
T Consensus 690 ~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~ 720 (1074)
T KOG0250|consen 690 NLEELEKKLRELSEHIEQIKRRIRKKRAEMT 720 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666777777777774433
No 258
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=31.89 E-value=3e+02 Score=22.91 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 188 EFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
++.....+|.+.+.++.+-+.+|..-+=+-++ .++--|=++|.+...||-
T Consensus 64 l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~---~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 64 LKAERQQKIAEKQQKVAEREAELKEAQAKGDS---DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHh
Confidence 45666777888888888888888666544444 455556677888888774
No 259
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=31.84 E-value=4.1e+02 Score=26.61 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=44.4
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC--CchHHHHHhhhChhHHHHHHHHHHHHH
Q 024197 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLK--PPLMQARRLLLDPAIHEEFRRLKNLVE 197 (271)
Q Consensus 133 Ql~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~--ps~~qlR~~LlDPAVNlef~rLr~eLe 197 (271)
-|.+..-||.-|...|+.+=|+..+...+++++|-..+ ...+.-|..++|- |-.++..+|++++
T Consensus 260 ~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~e-Vm~e~E~~KqemE 325 (384)
T KOG0972|consen 260 ALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDE-VMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 46777889999999999999999999999988865543 3345566666553 3334444444444
No 260
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.80 E-value=4.6e+02 Score=30.05 Aligned_cols=106 Identities=22% Similarity=0.294 Sum_probs=60.8
Q ss_pred CCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHH---HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHH--Hhhh
Q 024197 107 PGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAA---FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR--RLLL 181 (271)
Q Consensus 107 a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~v---lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR--~~Ll 181 (271)
.|++.+-+.-..++..|+..-++|.+||.+..+|.+- .-.++.-+|..|+-.+..+..+|....-.-+.++ ...+
T Consensus 641 sGG~s~~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i 720 (1141)
T KOG0018|consen 641 SGGSSGAKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEI 720 (1141)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677889999999999999999888777651 1123344455555444444444422111112222 1222
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 182 DPAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
| -+.-.++.+..+|+..+...+.++..++.+
T Consensus 721 ~-~~~p~i~~i~r~l~~~e~~~~~L~~~~n~v 751 (1141)
T KOG0018|consen 721 D-EFGPEISEIKRKLQNREGEMKELEERMNKV 751 (1141)
T ss_pred H-hhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233333345557777777777777666654
No 261
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.55 E-value=2.4e+02 Score=21.73 Aligned_cols=27 Identities=33% Similarity=0.257 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 140 KEAAFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 140 RE~vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
|=+-+|-+|+.++.|+.+++.....+.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334567788888888888888877765
No 262
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.54 E-value=5.1e+02 Score=25.47 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=42.6
Q ss_pred HHHHHhhhChhH------HHHHHHHHHHHHHHHHHHHHHHHhhhh-cc--cCCCch--------hHHHHHHHHHhHHHHH
Q 024197 174 MQARRLLLDPAI------HEEFRRLKNLVEEKDKKVKELEENIAA-VS--FTANSK--------MGKALMAKCKTLQEEN 236 (271)
Q Consensus 174 ~qlR~~LlDPAV------Nlef~rLr~eLee~~~kle~aq~ELsA-wk--FTpdS~--------~GKrLmaKCR~LqeEN 236 (271)
.+||.--+|-.- -.++-+|-+.+.....+-+.+|..|.. +. |+|... ++-.+++-++.|-+|-
T Consensus 159 e~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV 238 (310)
T PF09755_consen 159 ERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEV 238 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHH
Confidence 456655555221 112344444444445555555666642 22 333322 4578999999999999
Q ss_pred HHHhhhhhcc
Q 024197 237 DEIGRQNEEG 246 (271)
Q Consensus 237 EELGr~lseg 246 (271)
.-|-.++...
T Consensus 239 ~RLR~qL~~s 248 (310)
T PF09755_consen 239 SRLRQQLAAS 248 (310)
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 263
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=31.22 E-value=2.4e+02 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024197 187 EEFRRLKNLVEEKDKKVKELE 207 (271)
Q Consensus 187 lef~rLr~eLee~~~kle~aq 207 (271)
..+..++..|......+..++
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~ 28 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQ 28 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 264
>PF15120 DUF4561: Domain of unknown function (DUF4561)
Probab=31.15 E-value=75 Score=28.73 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=42.5
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 181 lDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
.|--|-.+|..+..+|.....+++... |....-..+|+|||.|.....++.
T Consensus 61 tDrril~~FL~iv~dL~~l~~~~~~~~---------~~~~~~~~~Le~ck~LL~~~nD~S 111 (171)
T PF15120_consen 61 TDRRILEMFLDIVRDLSRLCQQLESLI---------SGNETTNALLEKCKTLLNPSNDFS 111 (171)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHc---------cCChhHHHHHHHHHHHcCCccchH
Confidence 455777899999999999888887766 777888899999999988777665
No 265
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=30.86 E-value=1e+03 Score=28.84 Aligned_cols=157 Identities=20% Similarity=0.305 Sum_probs=84.5
Q ss_pred HHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 024197 69 ESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF 148 (271)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rL 148 (271)
+.+..+-..+..++.+..+-++++.+..+. ..+-...+..|...=+.+|.+..+...|-.-|...|
T Consensus 654 ~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~--------------~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i 719 (1822)
T KOG4674|consen 654 ENLKKLQEDFDSLQKEVTAIRSQLEKLKNE--------------LNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTI 719 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555444422 123344555666666777777777778888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCc---hHHHH--HhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc----
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPP---LMQAR--RLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS---- 219 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps---~~qlR--~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS---- 219 (271)
+..++.++.+...+..-..-+... ...|+ ..+ .-..+.+|..++...-.+...++..+.-.+|.-..
T Consensus 720 ~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~l----l~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s 795 (1822)
T KOG4674|consen 720 SKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLL----LKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEES 795 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777665544333221 11222 111 12234566666666666666666555554443322
Q ss_pred --hhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 220 --KMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 220 --~~GKrLmaKCR~LqeENEELGr~l 243 (271)
.+-.++=++...|..+...|.+-+
T Consensus 796 ~~~~k~~~e~~i~eL~~el~~lk~kl 821 (1822)
T KOG4674|consen 796 EMATKDKCESRIKELERELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334444455555555544443
No 266
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.84 E-value=37 Score=25.46 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=15.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 246 GETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 246 gria~LE~eLAlqK~~~eELrk~~e 270 (271)
+++..+++.++..|+.+++++.+.+
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666554
No 267
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.46 E-value=4.7e+02 Score=24.66 Aligned_cols=42 Identities=24% Similarity=0.480 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 187 EEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 187 lef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
.+|..|-.+++..+.+...+..+|.- ||.+...|+.+...+-
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~------------l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAE------------LMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 45666666666666666666666643 4555555555555544
No 268
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=30.07 E-value=5.4e+02 Score=25.22 Aligned_cols=89 Identities=24% Similarity=0.236 Sum_probs=56.8
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHhcCCc---hHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHH
Q 024197 138 KKKEAAFIVTFAKREQEIAELKS--------AVRDLKAQLKPP---LMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (271)
Q Consensus 138 krRE~vlv~rLAtKEQEiqEl~s--------qi~dlK~~~~ps---~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~a 206 (271)
-=+|+.|--+||.++.+++++.. .+..|..+.+-- .--.|..+++-+-+.+.-.+++.-++.+.+...+
T Consensus 34 elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lL 113 (291)
T KOG4466|consen 34 ELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKKLL 113 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999888886543 334443332211 1113456677777777777777777777777777
Q ss_pred HHhhhhcccCCCchhHHHHHHHHHhHHHHHH
Q 024197 207 EENIAAVSFTANSKMGKALMAKCKTLQEEND 237 (271)
Q Consensus 207 q~ELsAwkFTpdS~~GKrLmaKCR~LqeENE 237 (271)
++.|.+= |=.|.|+|++|--
T Consensus 114 ke~l~se-----------leeKkrkieeeR~ 133 (291)
T KOG4466|consen 114 KENLISE-----------LEEKKRKIEEERL 133 (291)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHh
Confidence 7777654 6667777766543
No 269
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.84 E-value=6.9e+02 Score=26.40 Aligned_cols=68 Identities=16% Similarity=0.328 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-chhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhH
Q 024197 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTAN-SKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSV 253 (271)
Q Consensus 186 Nlef~rLr~eLee~~~kle~aq~ELsAwkFTpd-S~~GKrLmaKCR~LqeENEELGr~lsegria~LE~ 253 (271)
...+..+-.++..++....++..++....=+.+ |.--+|++.=........+|+-|.+...|.-+.|+
T Consensus 453 r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 453 REEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666777777766644433 34568999999999999999999998776544443
No 270
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=29.69 E-value=3.9e+02 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=28.1
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
++..++..+..|+..++.|+.|+.+++||+..++.
T Consensus 99 ~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~ 133 (385)
T PRK09578 99 LKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRD 133 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556667778888899999999999999987764
No 271
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=29.65 E-value=1.1e+02 Score=29.77 Aligned_cols=54 Identities=31% Similarity=0.397 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk 214 (271)
-.-|+.|.++...|.+|+.....+ ++.+..++..|..++++.+++ .-..|++|.
T Consensus 6 ~~fe~~i~~l~~~~~~l~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~---~~~~l~~w~ 59 (316)
T TIGR00513 6 LDFEKPIAELEAKIESLRARSRDE---------DVDLSEEIERLEKRSVELTKK---IFSNLGAWQ 59 (316)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhcc---------cccHHHHHHHHHHHHHHHHHH---HHhcCCHHH
Confidence 357889999999999998864321 244666777777776666544 334667774
No 272
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=29.34 E-value=1.1e+02 Score=29.86 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197 150 KREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (271)
Q Consensus 150 tKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk 214 (271)
.-|+.|.|+...|.+|+.....+ +..+..++.+|..++.+..++. -..|++|.
T Consensus 10 ~fe~~i~el~~~i~~l~~~~~~~---------~~~~~~~i~~l~~~~~~~~~~~---~~~l~~w~ 62 (322)
T CHL00198 10 DFMKPLAELESQVEELSKLAPKN---------DKVINNKLKSFQRKLRILKKEI---FYSLTPLQ 62 (322)
T ss_pred chhhhHHHHHHHHHHHHhhhccc---------ccCHHHHHHHHHHHHHHHHHHH---HhcCCHHH
Confidence 56899999999999998864321 2446777888887777665543 34666664
No 273
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=29.21 E-value=2.5e+02 Score=22.67 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=23.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhcccC
Q 024197 75 KDTLATCQLELEAAKSEIQKWHSSFQNELF 104 (271)
Q Consensus 75 ~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~ 104 (271)
.-+++..-.++.-..+.|-+|+..|.....
T Consensus 29 g~sv~evA~e~gIs~~tl~~W~r~y~~~~~ 58 (121)
T PRK09413 29 GMTVSLVARQHGVAASQLFLWRKQYQEGSL 58 (121)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHhhccc
Confidence 346666667888899999999999986543
No 274
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=29.15 E-value=1.8e+02 Score=21.50 Aligned_cols=39 Identities=31% Similarity=0.306 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHH
Q 024197 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVE 197 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLe 197 (271)
+.+|...=..|+.||..-.+.. -+||+|+.+ ..||.++.
T Consensus 2 ~~~I~~QG~~VR~LKa~ka~k~------~i~~aV~~L-l~LK~~~~ 40 (56)
T PF00458_consen 2 EAQIAAQGDKVRKLKAEKADKE------EIDAAVAKL-LELKAELK 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHTT--HH------HHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccCCcHH------HHHHHHHHH-HHHHHHHH
Confidence 4567777788999998854422 689999875 55666554
No 275
>PF15200 KRTDAP: Keratinocyte differentiation-associated
Probab=29.08 E-value=24 Score=28.07 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.5
Q ss_pred HHHHHHHhhhcccCC
Q 024197 91 EIQKWHSSFQNELFI 105 (271)
Q Consensus 91 ei~kW~~~fq~e~~i 105 (271)
-|+||+++||.+.|+
T Consensus 28 Nvdklrsafk~~eFl 42 (77)
T PF15200_consen 28 NVDKLRSAFKSEEFL 42 (77)
T ss_pred cHHHHHHhhChHhhh
Confidence 369999999998775
No 276
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.03 E-value=2.1e+02 Score=29.97 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=56.3
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhH-----
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK----- 140 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krR----- 140 (271)
.++.-+..-...|+..+..+++...|...=....|. .+.. ....-..+...+...+..-..|++++++..+.
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~--~~~~-~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQA--SVHQ-LDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 445545555555666666666666655221111111 1101 11112345556666677777777777666554
Q ss_pred --HHHHHHHHhhHHHHHH-HHHHHHHHHHHh-------cCCchHHHHHh
Q 024197 141 --EAAFIVTFAKREQEIA-ELKSAVRDLKAQ-------LKPPLMQARRL 179 (271)
Q Consensus 141 --E~vlv~rLAtKEQEiq-El~sqi~dlK~~-------~~ps~~qlR~~ 179 (271)
|.=++.|+|...-.+. ++.+.+.-|+.+ .+|....+|++
T Consensus 420 laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~A 468 (656)
T PRK06975 420 IAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKA 468 (656)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4456667776655443 455555544433 24555555543
No 277
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=28.97 E-value=7e+02 Score=26.23 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCc---hHHHHHhhh------ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCc
Q 024197 150 KREQEIAELKSAVRDLKAQLKPP---LMQARRLLL------DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS-FTANS 219 (271)
Q Consensus 150 tKEQEiqEl~sqi~dlK~~~~ps---~~qlR~~Ll------DPAVNlef~rLr~eLee~~~kle~aq~ELsAwk-FTpdS 219 (271)
.-||+++++.-.+...|.-+... ...|++.+- .---.++-...|+||++.+..|+.|.-+|-+=. ..|-.
T Consensus 256 ~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS~wsaP~ 335 (575)
T KOG4403|consen 256 RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEANSSWSAPL 335 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcH
Confidence 34566666666665555443221 122333222 001123334555788888888888887774321 12222
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhh
Q 024197 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 220 ~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~ 268 (271)
.. +.++..---++-.+.+..|+. -|.++...|.-++-|||.
T Consensus 336 aL-Q~wLq~T~E~E~q~~~kkrqn-------aekql~~Ake~~eklkKK 376 (575)
T KOG4403|consen 336 AL-QKWLQLTHEVEVQYYNKKRQN-------AEKQLKEAKEMAEKLKKK 376 (575)
T ss_pred HH-HHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHh
Confidence 22 334444444455555666554 567888888888888874
No 278
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.83 E-value=46 Score=25.88 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=30.2
Q ss_pred HHHHHhHHHHHHHHhhhhh--cccchhhhHHHHHHHHHHHHHHhhh
Q 024197 226 MAKCKTLQEENDEIGRQNE--EGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 226 maKCR~LqeENEELGr~ls--egria~LE~eLAlqK~~~eELrk~~ 269 (271)
+.+||.+..++..+.+.+. +..|+.|+.++...+.....++...
T Consensus 37 lq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 37 LQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666665553 3567788888888888888887653
No 279
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.75 E-value=5.4e+02 Score=24.85 Aligned_cols=108 Identities=27% Similarity=0.383 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccCCCCC---CCCChhhhHHHHH------------------hhHhhHHHHHHHHHHHHh
Q 024197 81 CQLELEAAKSEIQKWHSSFQNELFIPPG---TSPEPRLVINYLQ------------------TLKSSEEMLKEQLEKAKK 139 (271)
Q Consensus 81 ~~~~l~~a~~ei~kW~~~fq~e~~i~a~---~~~~~~l~~~~l~------------------~Lk~sE~~LkeQl~e~kr 139 (271)
++.+|.---+-|.|-| +|-| +-.||.+|..+|. .+|+--+.+|+.+++..+
T Consensus 78 f~eeLrg~VGhiERmK--------~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~ 149 (290)
T COG4026 78 FFEELRGMVGHIERMK--------IPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQK 149 (290)
T ss_pred HHHHHHHhhhhhheec--------cCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666 5544 5578888876653 455666788888888888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024197 140 KEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEEN 209 (271)
Q Consensus 140 RE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~E 209 (271)
---.|+-++..+|-|..++...+..|+-- + .-.+.+|.+|-.+++..++++.++...
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E-~------------s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVE-N------------SRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 77788999999999999998888887543 1 124566666666666667766666543
No 280
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=28.36 E-value=2.7e+02 Score=27.96 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhh---ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhH
Q 024197 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLL---DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG 222 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll---DPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G 222 (271)
-.+++++.....+|+.... ....++.++- ||.+..++ +.||.+.+.++..+..+|.-.=..+|+.-+
T Consensus 42 ~a~l~~iv~~~~~~~~~~~-~l~~a~~~l~~~~D~em~ema---~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~ 111 (363)
T COG0216 42 YAELEPIVEKYREYKKAQE-DLEDAKEMLAEEKDPEMREMA---EEEIKELEAKIEELEEELKILLLPKDPNDD 111 (363)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3444444444444443321 1222333344 88877764 478999999999999999888777776543
No 281
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=28.29 E-value=90 Score=30.16 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 220 KMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 220 ~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
+-=+++|.++..|++--..|- ++-..|..+++..++.++|+|..+.
T Consensus 220 Kcr~rkLdrisrLEdkv~~lk-----~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 220 KCRKRKLDRISRLEDKVKTLK-----IYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhh-----hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334667777777777666665 3447888999999999999998764
No 282
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=28.22 E-value=2.5e+02 Score=21.79 Aligned_cols=51 Identities=27% Similarity=0.356 Sum_probs=33.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 146 VTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 146 ~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL 210 (271)
.+||.+-||-.++-+.|+.+-+..+ | -+-|+|||.+-=..+.++..+.+.+
T Consensus 11 l~~arLrqeH~D~DaaInAmi~~~c-----------D---~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 11 LTLARLRQEHADFDAAINAMIATGC-----------D---ALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhCC-----------c---HHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 4566666777777777666644322 1 1457889888777777777776654
No 283
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=28.11 E-value=2.5e+02 Score=23.77 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=7.0
Q ss_pred CCCchhHHHHHH
Q 024197 216 TANSKMGKALMA 227 (271)
Q Consensus 216 TpdS~~GKrLma 227 (271)
++.|++|+.||-
T Consensus 121 S~~SPlG~aLlG 132 (157)
T PRK00226 121 SIESPIARALIG 132 (157)
T ss_pred ccCChHHHHHhC
Confidence 444666666653
No 284
>PLN02320 seryl-tRNA synthetase
Probab=27.92 E-value=3.5e+02 Score=28.07 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLD---PAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlD---PAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
+-.|-.+.++...+..++..+|..++.-+.+....... .++-.+...|+.+|...+..+..++++|.
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888888887776655555431111 13334556777788888887777776664
No 285
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=2.4e+02 Score=29.74 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=0.0
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----------cCCCc-----------hhHHHHHHHHH-hHHHHHHH
Q 024197 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS----------FTANS-----------KMGKALMAKCK-TLQEENDE 238 (271)
Q Consensus 181 lDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk----------FTpdS-----------~~GKrLmaKCR-~LqeENEE 238 (271)
.||.+..-++.|.+++...+.+++.++..|.+.. |+|++ ..-+..|+|.+ .|..=+++
T Consensus 404 ~dpe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~ 483 (543)
T COG1315 404 MDPEIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEE 483 (543)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhcccc
Q 024197 239 IGRQNEEGET 248 (271)
Q Consensus 239 LGr~lsegri 248 (271)
|+.+..+|.|
T Consensus 484 le~~~~eg~V 493 (543)
T COG1315 484 LEVVGIEGSV 493 (543)
T ss_pred HhhhcccceE
No 286
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=27.67 E-value=4.4e+02 Score=23.48 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchHHHHH-----------hhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccC
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPPLMQARR-----------LLLDPAIHEEFRRLKNLVEEKDKKVKELEENI-AAVSFT 216 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~-----------~LlDPAVNlef~rLr~eLee~~~kle~aq~EL-sAwkFT 216 (271)
-.+.+|..+|+..+.+...+..--....|. ...+|... ....+..++.....++..-..=+ .|+.+.
T Consensus 73 ~~Lq~EN~eL~~~leEhq~alelIM~KyReq~~~l~~~~k~~~~~~~~~-~~~~~~~~~~~~~~kI~EM~~vM~~ai~~d 151 (181)
T PF05769_consen 73 RQLQQENRELRQSLEEHQSALELIMSKYREQMSQLMMASKFDDTEPYLE-ANEQLSKEVQSQAEKICEMAAVMRKAIELD 151 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 444555556666555554433222222221 22344443 23455566666666665544333 344444
Q ss_pred CCchhHHHHHHHHHhHHHHHHHHhhhhh
Q 024197 217 ANSKMGKALMAKCKTLQEENDEIGRQNE 244 (271)
Q Consensus 217 pdS~~GKrLmaKCR~LqeENEELGr~ls 244 (271)
-++ ....-.+...|..||++|-..++
T Consensus 152 e~~--~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 152 EEN--SQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred hhh--hHhHHHHHHHHHHHHHHHHHHHh
Confidence 433 34666777788889988887764
No 287
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.53 E-value=1.1e+02 Score=23.87 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=32.0
Q ss_pred hHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHH
Q 024197 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWH 96 (271)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~ 96 (271)
..-+-.|++.|+.+.+.++..+.++.+++..+.-|.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 346788999999999999999999999999998873
No 288
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=27.40 E-value=4.7e+02 Score=23.67 Aligned_cols=145 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred chhHHHHhhHHHHHhchhh-hhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHH
Q 024197 59 VATGMILSLRESLQNCKDT-LATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKA 137 (271)
Q Consensus 59 ~~t~~il~lr~~l~~~~~~-~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~ 137 (271)
+...+|-++.+.+++--.+ ....+..+..-...|..-+..+++| +.--....-.+...-...|....+.+..+-..-
T Consensus 67 ~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee--~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R 144 (247)
T PF06705_consen 67 KFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEE--KEERPQDIEELNQELVRELNELQEAFENERNER 144 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 024197 138 KKKEAAFIVTF---------------AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK 202 (271)
Q Consensus 138 krRE~vlv~rL---------------AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~k 202 (271)
..||..++.+| .++|+.+.++++.|.+++......--+.+..+++ +|..|+..|......
T Consensus 145 ~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~-----Ei~~lk~~l~~e~~~ 219 (247)
T PF06705_consen 145 EEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLE-----EIAALKNALALESQE 219 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh
Q 024197 203 VKELEENI 210 (271)
Q Consensus 203 le~aq~EL 210 (271)
-+.+.+++
T Consensus 220 R~~~Dd~I 227 (247)
T PF06705_consen 220 REQSDDDI 227 (247)
T ss_pred HHhhhhHH
No 289
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=27.23 E-value=8e+02 Score=26.34 Aligned_cols=196 Identities=18% Similarity=0.170 Sum_probs=125.3
Q ss_pred hHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCC----CC----h----hhhHHHHHhhHhhHH
Q 024197 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTS----PE----P----RLVINYLQTLKSSEE 128 (271)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~----~~----~----~l~~~~l~~Lk~sE~ 128 (271)
.|-+...+.-++.-++.|..+-.-|+.--+.|-+.-.-+. .||.+.+. .| + ..+.+-+..+|..=-
T Consensus 35 ~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe--~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~ 112 (683)
T PF08580_consen 35 SGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIE--VYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTLI 112 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hhccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666555444444444444433222 22222211 11 1 122223334666666
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc--CC-----ch---HHHHH------------------hh
Q 024197 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL--KP-----PL---MQARR------------------LL 180 (271)
Q Consensus 129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~--~p-----s~---~qlR~------------------~L 180 (271)
.+|.|+.-+=.=|-+...-|-+...||.+|...+-+|.... -| +. .++=. .-
T Consensus 113 ~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~ 192 (683)
T PF08580_consen 113 SVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSP 192 (683)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCcCCCCCCc
Confidence 78888888888899999999999999999999777765332 11 11 11111 12
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch----------hHHHHHHHHHhHHHHHHHHhhhhhcccchh
Q 024197 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSK----------MGKALMAKCKTLQEENDEIGRQNEEGETHQ 250 (271)
Q Consensus 181 lDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~----------~GKrLmaKCR~LqeENEELGr~lsegria~ 250 (271)
.|=+++..|..|.+.++=.+.-|+-+--.|..++.-..+. -=+.||.|-+.|+.|-++|.+.+-+-|-.-
T Consensus 193 ~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~ 272 (683)
T PF08580_consen 193 QDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNI 272 (683)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4566777888888888888888877777776665544432 126799999999999999999999999888
Q ss_pred hhHHHHHH
Q 024197 251 LSVKLALQ 258 (271)
Q Consensus 251 LE~eLAlq 258 (271)
+..-+.-|
T Consensus 273 vFr~l~~q 280 (683)
T PF08580_consen 273 VFRNLGRQ 280 (683)
T ss_pred HHHHHHHH
Confidence 87766544
No 290
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.05 E-value=8.2e+02 Score=26.38 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=51.7
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197 135 EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (271)
Q Consensus 135 ~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk 214 (271)
.+.++|-+.|.......-++++++...+..++.... ....=|.+.+..-+...++++..-..+.+-
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae-------------~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~- 626 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAE-------------KLAERYEEAKDKQEKLMKRVDRVLQLLNSQ- 626 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 466777777776666666666666666666643321 111223333344444444444433333322
Q ss_pred cCC-CchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHH
Q 024197 215 FTA-NSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSL 261 (271)
Q Consensus 215 FTp-dS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~ 261 (271)
.| -|..=+.++...+.+..+...|+ .+|.++-..+..|+.+
T Consensus 627 -~P~LS~AEr~~~~EL~~~~~~l~~l~-----~si~~lk~k~~~Q~~~ 668 (717)
T PF10168_consen 627 -LPVLSEAEREFKKELERMKDQLQDLK-----ASIEQLKKKLDYQQRQ 668 (717)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 23 33334555555555555554444 2334444444444443
No 291
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=27.01 E-value=2.4e+02 Score=28.39 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=60.2
Q ss_pred hhcccC-CCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 024197 99 FQNELF-IPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR 177 (271)
Q Consensus 99 fq~e~~-i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR 177 (271)
|.+|.. .|-....+|.-+ |. .++-.||..++.+|..+...+.++..
T Consensus 145 FG~E~tH~C~m~~~~p~~v----------------Q~-------~L~~~Rl~~L~~qi~~~~~~l~~~~~---------- 191 (475)
T PF10359_consen 145 FGNEPTHDCLMGDNDPRRV----------------QI-------ELIQERLDELEEQIEKHEEKLGELEL---------- 191 (475)
T ss_pred CCCCCceeeEeecCCcchH----------------HH-------HHHHHHHHHHHHHHHHHHHhhhcccc----------
Confidence 888776 444455566443 22 35667888889999988888888755
Q ss_pred HhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 178 RLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 178 ~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
.-.||.+...+..+...+...+.+++-++..|.-.
T Consensus 192 -~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 192 -NPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24688888899999999999999998888777544
No 292
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=27.00 E-value=2.7e+02 Score=27.06 Aligned_cols=101 Identities=24% Similarity=0.288 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q 024197 83 LELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAV 162 (271)
Q Consensus 83 ~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi 162 (271)
.++.--..|+.+|.....-| +|....|--.+....=..+|--..+++.-.+..+.| ...|-||+.+|...-.++.+.
T Consensus 167 ~~~g~~r~e~~~~e~~~v~e--~~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr-~rkLdrisrLEdkv~~lk~~n 243 (279)
T KOG0837|consen 167 REVGMTRKELEKDEPQTVAE--IPELKEPISPIDMEDQEKIKLERKRLRNREAASKCR-KRKLDRISRLEDKVKTLKIYN 243 (279)
T ss_pred cccccchHHHhhccchhhcc--CcccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHhhhhhhhhhh
Confidence 33433345677777443333 553333222233222223333333333333333333 235678888888777777777
Q ss_pred HHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHH
Q 024197 163 RDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (271)
Q Consensus 163 ~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~a 206 (271)
++|- -+..+|+..+.+.+.++...
T Consensus 244 ~~L~--------------------~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 244 RDLA--------------------SELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred hhHH--------------------HHHHHHHHHHHHHHHHHHHH
Confidence 6662 23355666666666665543
No 293
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.99 E-value=3.6e+02 Score=22.26 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=18.2
Q ss_pred HhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 178 RLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 178 ~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
.++.+-..--.+..||.++...+..+..++.+..
T Consensus 50 El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 50 ELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666666555555555555443
No 294
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=26.96 E-value=47 Score=34.70 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (271)
Q Consensus 224 rLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eEL 265 (271)
.....++.|..|..+|--. ..|+.+||.++...|+..+++
T Consensus 288 ~~A~~a~~LrDElD~lR~~--a~r~~klE~~ve~YKkKLed~ 327 (713)
T PF05622_consen 288 AEAREARALRDELDELREK--ADRADKLENEVEKYKKKLEDL 327 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888844 488999999888887766553
No 295
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=26.82 E-value=8.8e+02 Score=26.67 Aligned_cols=119 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHH-hHHHHHH
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAK-KKEAAFI 145 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~k-rRE~vlv 145 (271)
|+.+|+.-.+.++.|...|.+|....+-=. ++-+.|..+|..-+ .=+.+|.
T Consensus 526 LE~~Lq~~qe~la~l~~QL~~Ar~~lqes~----------------------------eea~~lR~EL~~QQ~~y~~alq 577 (739)
T PF07111_consen 526 LEQELQEKQESLAELEEQLEAARKSLQEST----------------------------EEAAELRRELTQQQEVYERALQ 577 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHH----HHHHHHHHHHHHHHHhcCCchHHHHHh----------------hhChhHHHHHHHHHHHHHHHHHHHHH
Q 024197 146 VTFAKRE----QEIAELKSAVRDLKAQLKPPLMQARRL----------------LLDPAIHEEFRRLKNLVEEKDKKVKE 205 (271)
Q Consensus 146 ~rLAtKE----QEiqEl~sqi~dlK~~~~ps~~qlR~~----------------LlDPAVNlef~rLr~eLee~~~kle~ 205 (271)
.+.+..| ..+.++-..+++.|.-|...+++||++ +.|-+-..+..+|+..+.+.+..-+.
T Consensus 578 ekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl 657 (739)
T PF07111_consen 578 EKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERDKNL 657 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHhhhhc
Q 024197 206 LEENIAAV 213 (271)
Q Consensus 206 aq~ELsAw 213 (271)
.-..|-|+
T Consensus 658 ~l~rl~~~ 665 (739)
T PF07111_consen 658 MLQRLLAV 665 (739)
T ss_pred HHHHHHHh
No 296
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77 E-value=1.6e+02 Score=28.29 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 024197 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 225 LmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELr 266 (271)
++.|...++.+|.+++.. +.+|+.+|+..++.+.+-.
T Consensus 64 ~~~k~~~~~~~i~~~~~e-----ik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 64 IQSKIDELQKEIDQSKAE-----IKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 678888888888888744 3666666666655554443
No 297
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=26.75 E-value=92 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=25.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhcCC
Q 024197 142 AAFIVTFAKREQEIAELKSAVRDLKAQLKP 171 (271)
Q Consensus 142 ~vlv~rLAtKEQEiqEl~sqi~dlK~~~~p 171 (271)
.+++.+|..+-|+++++..+|.+|+.+..+
T Consensus 103 ~~llaqLealsqqL~~ls~qv~~L~~~~~~ 132 (135)
T PHA03385 103 LVLLAQLEALSQQLQELSQQVAQLREQTQS 132 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence 467889999999999999999999876543
No 298
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=26.75 E-value=1.5e+02 Score=20.41 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=32.7
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccCCCchhHHHHHHHH
Q 024197 180 LLDPAIHEEFRRLKNLVEEKDKKVKELEENI-AAVSFTANSKMGKALMAKC 229 (271)
Q Consensus 180 LlDPAVNlef~rLr~eLee~~~kle~aq~EL-sAwkFTpdS~~GKrLmaKC 229 (271)
-+||. +..+-..+..+.....+...+...| .++...|+.+....++++.
T Consensus 23 ~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 23 ELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 34444 3344445566666666777777666 5668899999988888764
No 299
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=26.71 E-value=3.1e+02 Score=25.45 Aligned_cols=64 Identities=14% Similarity=0.282 Sum_probs=49.8
Q ss_pred HHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHH
Q 024197 174 MQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEI 239 (271)
Q Consensus 174 ~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEEL 239 (271)
.+||.+.-||++.-.++.+..++...+..+..++..|..-+ -.-+-.|.||..++..+..-.-|
T Consensus 9 ~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~--~~~~~lk~l~~~~~~~~~~l~hl 72 (243)
T PF07160_consen 9 LSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREE--EALPKLKELMESSEEQQKKLQHL 72 (243)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999998877664 23345577888777666554443
No 300
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.67 E-value=3.6e+02 Score=30.28 Aligned_cols=128 Identities=12% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 129 MLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE 208 (271)
Q Consensus 129 ~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ 208 (271)
.++.......-++..|.-.+-.+++-+||++.-|.--|.... .|+-....|++++.+...++++.|+
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie-------------~~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIE-------------EVTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHH-------------HhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhcccCCCch-hHHHHHHHHHhHHHHHH------------HHhhhhhcccchhhhHHHHHHHHHHHHHHhhhcC
Q 024197 209 NIAAVSFTANSK-MGKALMAKCKTLQEEND------------EIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG 271 (271)
Q Consensus 209 ELsAwkFTpdS~-~GKrLmaKCR~LqeENE------------ELGr~lsegria~LE~eLAlqK~~~eELrk~~ee 271 (271)
.|.-. +|+++ .+.+|-++--.+..++. ||-++.-...+-.|+.+.+--.+..+=+..+..|
T Consensus 501 kl~~l--~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlke 574 (1118)
T KOG1029|consen 501 KLQKL--APEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKE 574 (1118)
T ss_pred HHHhh--hhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
No 301
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=26.53 E-value=9e+02 Score=26.70 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=28.5
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhcccc--hhhhHHHHHHHHHHHHHHhh
Q 024197 223 KALMAKCKTLQEENDEIGRQNEEGET--HQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 223 KrLmaKCR~LqeENEELGr~lsegri--a~LE~eLAlqK~~~eELrk~ 268 (271)
.-|.++|..|+-||..|.-..+.+-+ ..+...+...|...+-+.++
T Consensus 488 ~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kq 535 (786)
T PF05483_consen 488 TELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQ 535 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999877766532 23334444444444444433
No 302
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.50 E-value=2.7e+02 Score=24.40 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK 202 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~k 202 (271)
|....+.+-++|..-+.+++.|-...+|.....+ ++.-+|..||.+|.+...+
T Consensus 59 f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~------aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 59 FYAQTSALRQQLVSKRYEYNALLTANPPDSSKIN------AVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777777777555566444443 2445677777777665543
No 303
>PF14182 YgaB: YgaB-like protein
Probab=26.30 E-value=1.7e+02 Score=23.50 Aligned_cols=42 Identities=24% Similarity=0.500 Sum_probs=34.8
Q ss_pred HHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 226 MAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 226 maKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
|.||.....|..+|.+.. +++.+-.+++..|...+++.+.|+
T Consensus 23 lERCqeIE~eL~~l~~ea---~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 23 LERCQEIEKELKELEREA---ELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999998765 567777889988888888888775
No 304
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=26.27 E-value=5.6e+02 Score=24.76 Aligned_cols=81 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc--ccCCCchhH-HHHHHHHHhHHHHHH------------------HHhhhhhcccc
Q 024197 190 RRLKNLVEEKDKKVKELEENIAAV--SFTANSKMG-KALMAKCKTLQEEND------------------EIGRQNEEGET 248 (271)
Q Consensus 190 ~rLr~eLee~~~kle~aq~ELsAw--kFTpdS~~G-KrLmaKCR~LqeENE------------------ELGr~lsegri 248 (271)
..|..+-++.=+.+++.|+.|+-. .+.|+|..- --||.+.+.|+.|.+ .||+.--.--+
T Consensus 19 ~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~ 98 (268)
T PF11802_consen 19 EELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLI 98 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHhhhc
Q 024197 249 HQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 249 a~LE~eLAlqK~~~eELrk~~e 270 (271)
+.|++-|...++.++.||..++
T Consensus 99 ~eLe~vLs~~q~KnekLke~Le 120 (268)
T PF11802_consen 99 SELEMVLSTVQSKNEKLKEDLE 120 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 305
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.22 E-value=2.9e+02 Score=20.92 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=17.8
Q ss_pred HhhHHHHHhchhhhhhhHHHHHHHHHHHHH
Q 024197 65 LSLRESLQNCKDTLATCQLELEAAKSEIQK 94 (271)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~ei~k 94 (271)
-.|+..++.+...+..+..++..+...+.-
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~~~~~e 37 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELELTLEE 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677766666666665555444433
No 306
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=26.20 E-value=4.4e+02 Score=23.00 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhccc--C-----CCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhh
Q 024197 78 LATCQLELEAAKSEIQKWHSSFQNEL--F-----IPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAK 150 (271)
Q Consensus 78 ~~~~~~~l~~a~~ei~kW~~~fq~e~--~-----i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAt 150 (271)
+......+..|..++..|+.--+.+. + .......+-+-+-..|..|+.-|..|.+++.++.++..-..-.|..
T Consensus 27 l~~a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~ 106 (152)
T PF07321_consen 27 LQEARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEE 106 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666654442223211 1 1133344445566778889999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHH
Q 024197 151 REQEIAELKSAVRD 164 (271)
Q Consensus 151 KEQEiqEl~sqi~d 164 (271)
..++++.+..+..-
T Consensus 107 a~~~~~~a~r~~eK 120 (152)
T PF07321_consen 107 ARKQLQQARRQQEK 120 (152)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877766444
No 307
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=26.19 E-value=6.3e+02 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.380 Sum_probs=23.5
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHH
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWH 96 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~ 96 (271)
+|.....-...|..++..+..|....+..+
T Consensus 193 ~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~ 222 (458)
T COG3206 193 FRRASDSLDERLEELRARLQEAEAQVEDFR 222 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667788888888888888888888
No 308
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.18 E-value=6.4e+02 Score=24.81 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=62.8
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHH
Q 024197 134 LEKAKKKEAAFIVTFAKREQEIAELKSA-------VRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKEL 206 (271)
Q Consensus 134 l~e~krRE~vlv~rLAtKEQEiqEl~sq-------i~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~a 206 (271)
+.+++.+=.-|..-+..+-|.+.|+.-. +...|..-.+.. . -.+| -+=..|-..|+....+.+++
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~--~---~~~~---~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG--A---RHFP---HEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc--c---cccc---hHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555554444 444443332211 1 1233 55577778888888899988
Q ss_pred HHhhhhcccCCCchhH--HHHHHHHHhHHHHHHHHhhhhhc--ccchhhhHHHHHHHHHHHHHH
Q 024197 207 EENIAAVSFTANSKMG--KALMAKCKTLQEENDEIGRQNEE--GETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 207 q~ELsAwkFTpdS~~G--KrLmaKCR~LqeENEELGr~lse--gria~LE~eLAlqK~~~eELr 266 (271)
+.+++++.=--+-.+- =..=-||-.| |.||--.+.. .||.-+++-+.-=|-.-+.|+
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~RL---N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~ 206 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAHRL---NHELNYILNGDENRIVDIDALIMENRYLKERLK 206 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 8888776321111111 1133466677 5666544433 465556665554444444443
No 309
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.16 E-value=7.7e+02 Score=25.79 Aligned_cols=87 Identities=14% Similarity=0.255 Sum_probs=53.3
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 131 KEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 131 keQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL 210 (271)
++.+..+..+..+...++....--+.++..++.++|..-. ....=-.+.. --+..+..+++..+..++.+...+|++|
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~-~l~knq~vw~-~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENK-KLIKNQDVWR-GKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666666666666653311 0000001122 2345667888999999999999999999
Q ss_pred hhcccCCCc
Q 024197 211 AAVSFTANS 219 (271)
Q Consensus 211 sAwkFTpdS 219 (271)
.-+-|.=++
T Consensus 445 rDlmf~le~ 453 (493)
T KOG0804|consen 445 RDLMFFLEA 453 (493)
T ss_pred HhHheehhh
Confidence 998886655
No 310
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.16 E-value=2.9e+02 Score=20.93 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=36.6
Q ss_pred HHHHHhhHhhHHHHHHHH-HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 117 INYLQTLKSSEEMLKEQL-EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl-~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
...+.-|.+-+..|-+++ .+...++..+...+...++.+..+...+.......
T Consensus 49 ~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 49 DELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777 44556667777777778888877777777765543
No 311
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=26.02 E-value=4.2e+02 Score=23.25 Aligned_cols=94 Identities=16% Similarity=0.308 Sum_probs=49.9
Q ss_pred CCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc--ccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHH
Q 024197 57 PGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN--ELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQL 134 (271)
Q Consensus 57 ~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~--e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl 134 (271)
+++-+.++-.....=.+|+.-+-+++-.+-.-.+.|-.+-..|++ ..++.+-..+ .-+.+++.+
T Consensus 47 ~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~id~~--------------~~~~~~~~i 112 (184)
T PF05791_consen 47 SDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAIDQK--------------DKEDLKEII 112 (184)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc--------------cHHHHHHHH
Confidence 445555666666666667766666666666666666666655543 1111111111 122222222
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC
Q 024197 135 EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKP 171 (271)
Q Consensus 135 ~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~p 171 (271)
..|.-.+...+.+++.+...|..+|.....
T Consensus 113 -------~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~ 142 (184)
T PF05791_consen 113 -------EDLQDQIQKNQDKVQALINELNDFKDKLQK 142 (184)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345666667777777777777665433
No 312
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=25.89 E-value=4.7e+02 Score=23.24 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=43.4
Q ss_pred hhHHHHHHHH---HhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 220 KMGKALMAKC---KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 220 ~~GKrLmaKC---R~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
-+|-.||.=| |.++.+.+++.+.+...=|.+|+..+..-++++..+.+.|+
T Consensus 55 ~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ 108 (219)
T PF08397_consen 55 ELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYE 108 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4787777655 77888889999999999999999999999999888887764
No 313
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.33 E-value=3.6e+02 Score=21.60 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=51.8
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHH---HhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 132 EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQAR---RLLLDPAIHEEFRRLKNLVEEKDKKVKELEE 208 (271)
Q Consensus 132 eQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR---~~LlDPAVNlef~rLr~eLee~~~kle~aq~ 208 (271)
.+++..+..=..+.+.+..++.++.+....+.+|... .|+..=.| .+|+--.+......|...++..+.+++.+..
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l-~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek 88 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL-PDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQR 88 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555677888999999999999999999776 34432233 4555555666666666666666666655554
Q ss_pred hh
Q 024197 209 NI 210 (271)
Q Consensus 209 EL 210 (271)
.+
T Consensus 89 ~~ 90 (110)
T TIGR02338 89 QE 90 (110)
T ss_pred HH
Confidence 44
No 314
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=25.29 E-value=3.8e+02 Score=26.83 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHH
Q 024197 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALM 226 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLm 226 (271)
--|++|+.+.+..+|.-.... ....+.+-.+.-++..||+.|....- +.+..-.-||++..-|+|+
T Consensus 100 l~Ev~eL~~eve~ik~dk~~a---~Eek~t~~l~A~vla~lkk~l~al~l------eq~lGk~atp~~~~vk~ll 165 (371)
T KOG3958|consen 100 LHEVQELTTEVEKIKTDKESA---TEEKLTPVLLAKVLAALKKQLVALHL------EQLLGKDATPDGALVKRLL 165 (371)
T ss_pred HHHHHHHHHHHHHHhhchhhh---hhhhcchHHHHHHHHHHHHHHHHHHH------HHHhCCCCCCcHHHHHHHH
Confidence 358999999999887763322 23445566677778888887765432 2344444489999888888
No 315
>PRK00106 hypothetical protein; Provisional
Probab=25.26 E-value=8e+02 Score=25.66 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=15.9
Q ss_pred HhhhhhcccchhhhHHHHHHHH
Q 024197 239 IGRQNEEGETHQLSVKLALQKS 260 (271)
Q Consensus 239 LGr~lsegria~LE~eLAlqK~ 260 (271)
|-+.+..|||||--++-.+.|.
T Consensus 285 le~Li~dgrIhp~rIEe~v~k~ 306 (535)
T PRK00106 285 LESLIKDGRIHPARIEELVEKN 306 (535)
T ss_pred HHHHHHcCCcCHHHHHHHHHHH
Confidence 5567889999998776655444
No 316
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.21 E-value=3.3e+02 Score=28.36 Aligned_cols=87 Identities=24% Similarity=0.203 Sum_probs=57.4
Q ss_pred hhhhhhhHHHHHH-HHHHHHHHHHhhhcccCC----C-----CCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197 75 KDTLATCQLELEA-AKSEIQKWHSSFQNELFI----P-----PGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (271)
Q Consensus 75 ~~~~~~~~~~l~~-a~~ei~kW~~~fq~e~~i----~-----a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl 144 (271)
|+++-||+...-+ -.-+...|. ||+.+. . ...+.+-.-+.|.+..-++-+++|++-..-.-+-=+.+
T Consensus 91 k~~~~~ye~q~~~~leqertq~q---q~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~el 167 (542)
T KOG0993|consen 91 KSPNPTYECQMCQNLEQERTQLQ---QNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINEL 167 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Confidence 5566666666554 556677888 775552 1 23344556678888888888888887665555555666
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 024197 145 IVTFAKREQEIAELKSAVRD 164 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~d 164 (271)
-..|+.-|+-|+++....++
T Consensus 168 k~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 168 KKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHhHHHHHHHHHhhhcc
Confidence 66778888888877754444
No 317
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.17 E-value=5.8e+02 Score=26.50 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHH-HHhhHHHH
Q 024197 76 DTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIV-TFAKREQE 154 (271)
Q Consensus 76 ~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~-rLAtKEQE 154 (271)
|||+|+=+++++-+.+++.-. .+-+-+..+-..|+.-|..+.+|++.+-..|.-=+. ....+..|
T Consensus 59 DTlrTlva~~k~~r~~~~~l~--------------~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLI--------------SENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q 024197 155 IAELKSAVRDLKAQ 168 (271)
Q Consensus 155 iqEl~sqi~dlK~~ 168 (271)
++.+...|.+|...
T Consensus 125 ~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 125 RQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHH
No 318
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=9.3e+02 Score=26.30 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=23.6
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE 102 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e 102 (271)
.|=.+|++-...+..+..++....+++.+-+..++..
T Consensus 269 ~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~ 305 (698)
T KOG0978|consen 269 HLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSA 305 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3445666666666666666666677776666666653
No 319
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=24.97 E-value=1.2e+02 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=22.5
Q ss_pred CchhHHHHHHHHHhHHHHHHH-Hhhhhhcc
Q 024197 218 NSKMGKALMAKCKTLQEENDE-IGRQNEEG 246 (271)
Q Consensus 218 dS~~GKrLmaKCR~LqeENEE-LGr~lseg 246 (271)
.|++|++++++--.+-.+--+ ++......
T Consensus 30 ~Sp~Gqk~~~~~~~~~~~~~~~~~~~~~~~ 59 (64)
T PF09832_consen 30 ESPLGQKIVAKEPALMQASMQPAMQAWMQD 59 (64)
T ss_dssp HSHHHHHHHHHHHHHHHHHHH-HHHHHHCT
T ss_pred CCHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 588999999999988888666 66655443
No 320
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.61 E-value=1.1e+03 Score=27.05 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=92.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Q 024197 75 KDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQE 154 (271)
Q Consensus 75 ~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQE 154 (271)
+.-.+.+...-+-|+.++.+-...+ .|-.....+ +.+.+..+.+-=..++..+.++..+=.-.+--|-..+++
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~-----~pi~~~~ee--Le~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~ 319 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEI-----KPIEDKKEE--LESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDE 319 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhhhhh--HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544333 222222221 222232233333334445666666666667777778888
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHH
Q 024197 155 IAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQE 234 (271)
Q Consensus 155 iqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~Lqe 234 (271)
+++...++..+|.... .++ ..+..+++.+..+|++|+-..-++++ .++.--.+-..++.
T Consensus 320 v~~~~~~le~lk~~~~-------------------~rq-~~i~~~~k~i~~~q~el~~~~~~e~~-~~~~~ei~~~~~~~ 378 (1072)
T KOG0979|consen 320 VEEKKNKLESLKKAAE-------------------KRQ-KRIEKAKKMILDAQAELQETEDPENP-VEEDQEIMKEVLQK 378 (1072)
T ss_pred HHHHHHHHHHHHHHHH-------------------HHH-HHHHHHHHHHHHHHhhhhhcCCcccc-chhHHHHHHHHHHH
Confidence 8888888888866532 222 56788888899999999887665554 56665566678888
Q ss_pred HHHHHhhhhhcccchhhhHH
Q 024197 235 ENDEIGRQNEEGETHQLSVK 254 (271)
Q Consensus 235 ENEELGr~lsegria~LE~e 254 (271)
.+..++...+.+-.-++.+.
T Consensus 379 ~~~~~~~~~~~id~~~~~~~ 398 (1072)
T KOG0979|consen 379 KSSKLRDSRQEIDAEQLKSQ 398 (1072)
T ss_pred HhhhhhhhhhhhhHHHHHHH
Confidence 88888887776655554443
No 321
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=24.42 E-value=6.3e+02 Score=24.16 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=24.1
Q ss_pred CCCchhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc------ccCCCCCC
Q 024197 56 APGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN------ELFIPPGT 109 (271)
Q Consensus 56 ~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~------e~~i~a~~ 109 (271)
.|..+|. .||..+.+..+.|..-...=..-...+..|+..|+- ++++|...
T Consensus 124 pS~~~~~---~l~~~i~~~r~~L~~A~~sD~~v~~k~~~~~~~l~~L~~~~~~~~~Ps~~ 180 (339)
T cd09238 124 PSATLTK---NLWERLNRFRVNLEQAGDSDESLRRRIEDAMDGMLILDDEPAAAAAPTLR 180 (339)
T ss_pred ccHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHhhHhhCCCCC
Confidence 3444443 566666666665554333323223333444443332 45566543
No 322
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.22 E-value=3.1e+02 Score=24.83 Aligned_cols=56 Identities=29% Similarity=0.342 Sum_probs=41.3
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHhHHHHH--HHHHhhHHHHHHHHHHHHHHHHHhcCCc
Q 024197 117 INYLQTLKSSEEMLKEQLEKAKKKEAAF--IVTFAKREQEIAELKSAVRDLKAQLKPP 172 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e~krRE~vl--v~rLAtKEQEiqEl~sqi~dlK~~~~ps 172 (271)
...|..++..+++|.+.+.+++.=|-++ -.+|+..+.||..+..+++.|...-+-+
T Consensus 138 ~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 138 EARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 3457778888888888888777666654 4578888888888888888886655433
No 323
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.10 E-value=5.2e+02 Score=26.38 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=48.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhh---hC--hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 141 EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL---LD--PAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 141 E~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~L---lD--PAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
-...+-.|-..+.+...+...+..|++.+++-+-++-..+ .| +.+-.+...|+.+|+..+.+++.++.+|.
T Consensus 24 ~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 24 DALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555777777777777777777777777666554443222 22 55556667778888888888888887773
No 324
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=24.08 E-value=4.3e+02 Score=24.52 Aligned_cols=60 Identities=33% Similarity=0.334 Sum_probs=44.1
Q ss_pred HHhhHHHH--------HhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197 64 ILSLRESL--------QNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (271)
Q Consensus 64 il~lr~~l--------~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~ 135 (271)
|-+||+.| .+-+++|...-.++.+...-++.|+..++++. ..+..+++..+.++.|+.
T Consensus 2 i~~~~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~--------------~~~~~lk~l~~~~~~~~~ 67 (243)
T PF07160_consen 2 ISELKELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREE--------------EALPKLKELMESSEEQQK 67 (243)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 44566666 67788899999999999999999998777762 234456666776766664
Q ss_pred HH
Q 024197 136 KA 137 (271)
Q Consensus 136 e~ 137 (271)
.+
T Consensus 68 ~l 69 (243)
T PF07160_consen 68 KL 69 (243)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 325
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=23.96 E-value=5.5e+02 Score=23.29 Aligned_cols=178 Identities=16% Similarity=0.208 Sum_probs=84.0
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHH
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFI 145 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv 145 (271)
-|+..-+.|...+.++...+..-..+|++=+..+... . +....-+...|..-..-...|+++|+..+. +-
T Consensus 8 yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~--y----~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~----~~ 77 (206)
T PF14988_consen 8 YLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSR--Y----AKQTSELQDQLLQKEKEQAKLQQELQALKE----FR 77 (206)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HH
Confidence 3677778899999999999999999987555211111 0 011111222222333334455555543321 11
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHH----HHHHHH------HHHHHHHHHhhhhccc
Q 024197 146 VTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLK----NLVEEK------DKKVKELEENIAAVSF 215 (271)
Q Consensus 146 ~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr----~eLee~------~~kle~aq~ELsAwkF 215 (271)
.+=..-+.||+.+.-++...+..|... +-.+..-|..=| .++.+. +..-..+.....||.
T Consensus 78 ~~k~~qe~eI~~Le~e~~~~~~e~~~~---------l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale- 147 (206)
T PF14988_consen 78 RLKEQQEREIQTLEEELEKMRAEHAEK---------LQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALE- 147 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHH-
Confidence 122334555555555555544443321 111222222212 222111 011111112223442
Q ss_pred CCCchhHHHHHHHHHhHHHHHHHHhhhhhcc--cchhhhHHHHHHHHHHHHHH
Q 024197 216 TANSKMGKALMAKCKTLQEENDEIGRQNEEG--ETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 216 TpdS~~GKrLmaKCR~LqeENEELGr~lseg--ria~LE~eLAlqK~~~eELr 266 (271)
...-+.+..-|+.+..||..|-+.+..- ....|+..-.-+......|+
T Consensus 148 ---~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 148 ---LAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234679999999999999998877321 22334444444444444433
No 326
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=23.57 E-value=1e+03 Score=27.00 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHH
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWH 96 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~ 96 (271)
=|..|++.|+.-....++++..+++...++..|.
T Consensus 150 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1123)
T PRK11448 150 EVLTLKQQLELQAREKAQSQALAEAQQQELVALE 183 (1123)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 3455566655555555566666666655655554
No 327
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=23.51 E-value=2.5e+02 Score=27.39 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=49.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---C--CCchhH
Q 024197 148 FAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSF---T--ANSKMG 222 (271)
Q Consensus 148 LAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkF---T--pdS~~G 222 (271)
.-.-|+.|.|+...|.+||..... -+.-+..++.+|..+++...++.- ..|++|.= . |+-+.-
T Consensus 5 ~l~fe~~i~~l~~~i~~l~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~---~~l~~w~~v~~ar~~~Rp~~ 72 (319)
T PRK05724 5 YLDFEKPIAELEAKIEELRAVAED---------SDVDLSEEIERLEKKLEELTKKIY---SNLTPWQKVQLARHPQRPYT 72 (319)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcc---------ccccHHHHHHHHHHHHHHHHHHHh---cCCCHHHhhhcccCCCCCCH
Confidence 346689999999999999886432 135667788888888777655443 45666643 3 333333
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 024197 223 KALMAKCKTLQEENDEIG 240 (271)
Q Consensus 223 KrLmaKCR~LqeENEELG 240 (271)
. .-+..|-.+--||.
T Consensus 73 ~---d~I~~l~d~f~El~ 87 (319)
T PRK05724 73 L---DYIELLFTDFTELH 87 (319)
T ss_pred H---HHHHHHhhHHHHHc
Confidence 2 44444555666664
No 328
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=23.47 E-value=1.5e+02 Score=30.35 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-----CCCchhHHHH
Q 024197 151 REQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSF-----TANSKMGKAL 225 (271)
Q Consensus 151 KEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkF-----TpdS~~GKrL 225 (271)
-|+.|.||...|.+||.....+ +.-+..++.+|..++.+..++ .-..|++|.= .|+-+...-+
T Consensus 78 fe~pi~ele~ki~el~~~~~~~---------~~~~~~ei~~l~~~~~~~~~~---i~~~Lt~wq~vq~aRhp~RP~~~d~ 145 (431)
T PLN03230 78 FEKPIVDLENRIDEVRELANKT---------GVDFSAQIAELEERYDQVRRE---LYSRLTPVQRLSVARHPNRPTFLDH 145 (431)
T ss_pred hhhHHHHHHHHHHHHHhhhhcc---------cccHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHhCCCCCCHHHH
Confidence 4677888888888887764321 233556677776666555443 3346777753 4555544333
No 329
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.34 E-value=99 Score=23.36 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=28.1
Q ss_pred chhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHH
Q 024197 59 VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHS 97 (271)
Q Consensus 59 ~~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~ 97 (271)
|..|-=|++ =|+.+..+.|+.+++|...++.+|.+=+.
T Consensus 12 ~~ig~dLs~-lSv~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 12 HEIGEDLSL-LSVEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred cccCCCchh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 37788889999999999999999877553
No 330
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.33 E-value=1.2e+03 Score=26.99 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Q 024197 80 TCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELK 159 (271)
Q Consensus 80 ~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~ 159 (271)
.++.++-+++.+..=|+ .|..|.-+ .-.+.+-.-...++.++...=+.--.++...++..+....-++..++.|.+..
T Consensus 205 ~lkde~~~~q~e~~L~q-LfhvE~~i-~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke 282 (1141)
T KOG0018|consen 205 RLKDEKGKAQKEQFLWE-LFHVEACI-EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKE 282 (1141)
T ss_pred HHHHHHHHHHHHHHHHH-HhhhhhhH-hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888887 55556544 22222333333444455544444444555555556677888888888888888
Q ss_pred HHHHH
Q 024197 160 SAVRD 164 (271)
Q Consensus 160 sqi~d 164 (271)
+.+.+
T Consensus 283 ~~l~e 287 (1141)
T KOG0018|consen 283 EKLAE 287 (1141)
T ss_pred HHHhh
Confidence 88777
No 331
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=23.14 E-value=3.7e+02 Score=21.03 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCch------hHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSK------MGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~------~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~ 262 (271)
..+++++|+..+..+..+.+=|.... |... +=+-|...||.++.-...|--...... -++-.=..|
T Consensus 6 ~~k~~~~l~~v~~~~~lL~emL~~~~--~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~dee------~l~~lL~~N 77 (100)
T PF03127_consen 6 VSKRRSELEKVKNNAKLLNEMLDNYD--PGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDEE------LLGELLQAN 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--TTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcHH------HHHHHHHHH
Confidence 46788999999999999999998884 4443 235678999999998887775544442 344444555
Q ss_pred HHHHhhh
Q 024197 263 AELKSQF 269 (271)
Q Consensus 263 eELrk~~ 269 (271)
++|-+++
T Consensus 78 D~L~~~l 84 (100)
T PF03127_consen 78 DELNQAL 84 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 332
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.02 E-value=9e+02 Score=25.45 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=63.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHH
Q 024197 148 FAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMA 227 (271)
Q Consensus 148 LAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLma 227 (271)
+..+|++--....+.+++-....- .-.+-.++-||.-|+ .+|-..|.++..+...+...+.-. -+-|.+
T Consensus 257 ~~ales~~sq~~e~~selE~llkl-kerl~e~l~dgeayL--aKL~~~l~~~~~~~~~ltqqwed~--------R~pll~ 325 (521)
T KOG1937|consen 257 YKALESKRSQFEEQNSELEKLLKL-KERLIEALDDGEAYL--AKLMGKLAELNKQMEELTQQWEDT--------RQPLLQ 325 (521)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHh-HHHHHHhcCChHhHH--HHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHH
Confidence 444444444444444444221110 112334566776665 678888888888887777665433 234778
Q ss_pred HHHhHHHHHHHHhhhhhc-ccchhhhHHHHHHHHHHH
Q 024197 228 KCKTLQEENDEIGRQNEE-GETHQLSVKLALQKSLNA 263 (271)
Q Consensus 228 KCR~LqeENEELGr~lse-gria~LE~eLAlqK~~~e 263 (271)
|-..|.++..-++-.-.+ .+|++||..|-...+..+
T Consensus 326 kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 326 KKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777766666 788888887765554443
No 333
>PF15294 Leu_zip: Leucine zipper
Probab=22.98 E-value=7e+02 Score=24.15 Aligned_cols=77 Identities=27% Similarity=0.331 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhhc--c----cCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q 024197 87 AAKSEIQKWHSSFQN--E----LFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKS 160 (271)
Q Consensus 87 ~a~~ei~kW~~~fq~--e----~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~s 160 (271)
.|+.|-+.|.+.+.. + -..|-.+...+.++..++.+|++--++||..+.....+=...+.-=...+.++.++..
T Consensus 95 i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 95 IAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666655511 1 1222223334567888999999999999999888887777776666666666666665
Q ss_pred HHH
Q 024197 161 AVR 163 (271)
Q Consensus 161 qi~ 163 (271)
...
T Consensus 175 ~~~ 177 (278)
T PF15294_consen 175 EQG 177 (278)
T ss_pred HHH
Confidence 333
No 334
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=22.91 E-value=2e+02 Score=25.74 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=27.2
Q ss_pred CCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024197 170 KPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEEN 209 (271)
Q Consensus 170 ~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~E 209 (271)
-|++.-||++|.||-+.-+|..+-.-+...+.-...-|++
T Consensus 84 l~ssseLrsll~dp~Lr~Li~sid~~~n~~kel~aamqee 123 (157)
T KOG2857|consen 84 LPSSSELRSLLEDPHLRNLIESIDELLNIMKELVAAMQEE 123 (157)
T ss_pred ccchHHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHhcch
Confidence 3777889999999998877777655555444444444444
No 335
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=22.42 E-value=3.4e+02 Score=26.12 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=29.1
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcc
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNE 102 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e 102 (271)
++..|+..+..|+..+++|+.|+.+++|++..++..
T Consensus 101 ~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g 136 (397)
T PRK15030 101 YQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQ 136 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456677778888888999999999999999776643
No 336
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=22.33 E-value=3.1e+02 Score=19.79 Aligned_cols=54 Identities=30% Similarity=0.255 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhh
Q 024197 186 HEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQ 242 (271)
Q Consensus 186 Nlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~ 242 (271)
+.+|..++.+..+--.+-+.+-+++.++.-+++ -+..+..++.|+++=.++|.+
T Consensus 19 ~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d---~~~~~~~~k~l~~~Wk~iG~v 72 (77)
T PF03993_consen 19 KEFFEEQDAEREENLEKKEALIEEAEALAESED---WKEAAEEIKELQQEWKEIGPV 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHcCCC
Confidence 345556666666555556666677888877776 577889999999999998864
No 337
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.26 E-value=4.8e+02 Score=23.28 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=34.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 143 AFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 143 vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~EL 210 (271)
++.-.+++.++++.++..++.+++. -+.|+.++.++++++.+.-.++.
T Consensus 16 ~~~~~~~~~~~ei~~l~~e~~elkd--------------------~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 16 IAEEIVETANPEITALKAEIEELKD--------------------KLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678888888888888887752 34677888888888777655544
No 338
>PF15120 DUF4561: Domain of unknown function (DUF4561)
Probab=22.25 E-value=49 Score=29.84 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=51.7
Q ss_pred hhHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHH
Q 024197 60 ATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYL 120 (271)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l 120 (271)
.-.|.|++=+-|.+--..+-++.+.-+.++.-+++|+..++.+.=+......+|+-+.|.|
T Consensus 65 il~~FL~iv~dL~~l~~~~~~~~~~~~~~~~~Le~ck~LL~~~nD~S~lra~yPhd~vNhL 125 (171)
T PF15120_consen 65 ILEMFLDIVRDLSRLCQQLESLISGNETTNALLEKCKTLLNPSNDFSSLRAKYPHDVVNHL 125 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCccchHHHhhcCCccccCCC
Confidence 4468899888888888888888888899999999999999887777788888888777766
No 339
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=22.18 E-value=1.1e+02 Score=28.83 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
.+-+|+.+|.|+..|++||+.+=.++
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999997775
No 340
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.11 E-value=4.5e+02 Score=22.74 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 225 LmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
+-.+-..+.+|.++|.+.+. ..+.++...|++++.|-+.|.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~-----~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELE-----KKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhcC
Confidence 44566778888888887774 478888899999999988873
No 341
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=22.11 E-value=1.1e+03 Score=26.26 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhhhcccCCCch--hHHHHHHHHHhHHHHH----HHHhhhhhcccchhhhH
Q 024197 187 EEFRRLKNLVEEKDK-------KVKELEENIAAVSFTANSK--MGKALMAKCKTLQEEN----DEIGRQNEEGETHQLSV 253 (271)
Q Consensus 187 lef~rLr~eLee~~~-------kle~aq~ELsAwkFTpdS~--~GKrLmaKCR~LqeEN----EELGr~lsegria~LE~ 253 (271)
..|.+||.++.+.++ ++..++.+++-++=.-.-+ +-|.+..-+.+++-|. +++| .+..+++.|+.
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~--~sr~~~~~le~ 551 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYS--NSRALAAALEA 551 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHH
Confidence 457888888777663 4445555555554221111 2233333333333332 2333 22356778888
Q ss_pred HHHHHHHHHHHHHh
Q 024197 254 KLALQKSLNAELKS 267 (271)
Q Consensus 254 eLAlqK~~~eELrk 267 (271)
.++.....+.++|+
T Consensus 552 ~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 552 QALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHhhhhhhh
Confidence 87777777777665
No 342
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.07 E-value=8.3e+02 Score=24.66 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=32.8
Q ss_pred hhHHHHhhHHHHHhchhhhhhhHHHHHHHHH----HHHHHHHhhhcccCC
Q 024197 60 ATGMILSLRESLQNCKDTLATCQLELEAAKS----EIQKWHSSFQNELFI 105 (271)
Q Consensus 60 ~t~~il~lr~~l~~~~~~~~~~~~~l~~a~~----ei~kW~~~fq~e~~i 105 (271)
..+.+-.+.+-|...+.....++.+++.-+. +++-..+++|+|.|.
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R 259 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYR 259 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455666777777777777777777766665 667778888888885
No 343
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=22.04 E-value=8.6e+02 Score=24.85 Aligned_cols=123 Identities=13% Similarity=0.169 Sum_probs=74.1
Q ss_pred CCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHH--HHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChh
Q 024197 107 PGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIV--TFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPA 184 (271)
Q Consensus 107 a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~--rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPA 184 (271)
|-.+.+...+.+.| |+.+|.-+. ++..-.+++.+-.. -+..-|+.+.+-+..+.++|..+. ++||.
T Consensus 211 AF~PedA~~ia~aL--L~~sE~~VN-~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~g---------vlDP~ 278 (434)
T PRK15178 211 ARSAKQAEFFAQRI--LSFAEQHVN-TVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQK---------DIDPK 278 (434)
T ss_pred ecCHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CcChH
Confidence 44444444455444 677776443 45555566654332 234444555566666666665544 89997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVS--FTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 185 VNlef~rLr~eLee~~~kle~aq~ELsAwk--FTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
--.. -+-..|-..+.++-.++.+|.+.. ++|+++--..|=++...|+.+.++.-..+
T Consensus 279 ~~a~--~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 279 ETIT--AIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 6542 233444455555555555555442 68999988899999999998888754444
No 344
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.89 E-value=1.8e+02 Score=22.71 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=32.6
Q ss_pred HHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhh
Q 024197 62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSF 99 (271)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~f 99 (271)
.||-++-++|+.+++.+.+.+.-.+.+..=+++|-.-+
T Consensus 15 ~~ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd~w~~Il 52 (78)
T PF08651_consen 15 PVIEGLIETLRSAKSNMNRVQETVESTNTLLDKWIRIL 52 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788889999999999999999999999999997433
No 345
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=21.87 E-value=6.1e+02 Score=23.07 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=46.8
Q ss_pred chHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhccc-CCCchhHHHHHHHHHhHHHHHHHHh--hhhhccc
Q 024197 172 PLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKE-LEENIAAVSF-TANSKMGKALMAKCKTLQEENDEIG--RQNEEGE 247 (271)
Q Consensus 172 s~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~-aq~ELsAwkF-TpdS~~GKrLmaKCR~LqeENEELG--r~lsegr 247 (271)
+.+..||.++.--.+. ||.-+..++.+-.. +......-+- +|++.-=+.=+.|...|..|---|- -.+++++
T Consensus 67 ~aAEtRCslLEKQLey----MRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~K 142 (178)
T PF14073_consen 67 SAAETRCSLLEKQLEY----MRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETK 142 (178)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777776655444 44444443322111 1111221111 4555555556778888888888775 3578899
Q ss_pred chhhhHHHH
Q 024197 248 THQLSVKLA 256 (271)
Q Consensus 248 ia~LE~eLA 256 (271)
|..||..|-
T Consensus 143 i~~LE~KL~ 151 (178)
T PF14073_consen 143 IKELEEKLQ 151 (178)
T ss_pred HHHHHHHHH
Confidence 999998774
No 346
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.76 E-value=3.3e+02 Score=20.01 Aligned_cols=56 Identities=11% Similarity=0.234 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 184 AVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
.-+..+.+....|++++.-+.+...|++.. | +..-..++.|++....+...|-+.+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~---p-~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL---P-PSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567788888899999999998888866 3 2455778899998888888776654
No 347
>PRK10722 hypothetical protein; Provisional
Probab=21.53 E-value=4.9e+02 Score=24.91 Aligned_cols=34 Identities=21% Similarity=0.548 Sum_probs=27.9
Q ss_pred HhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 024197 72 QNCKDTLATCQLELEAAKSEIQKWHSSFQNELFI 105 (271)
Q Consensus 72 ~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i 105 (271)
=.|-+.|..-++.-+++.-...-|.++|+.--.+
T Consensus 82 mdcAdRL~~~ear~ea~~~~~~~w~~afkq~ILL 115 (247)
T PRK10722 82 MDCADRLMPAQARAQAKRLPDDSWQNAFKQGILL 115 (247)
T ss_pred HHHHHhcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4799999998888888887789999999885444
No 348
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.52 E-value=9e+02 Score=24.90 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=70.6
Q ss_pred hhHHHHHhchhhhhhh-HHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197 66 SLRESLQNCKDTLATC-QLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~-~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl 144 (271)
.|...|+.+...|.+. ..-+...+..+..|...++.- .-+.++....+.+.+.+..|+..+...-.
T Consensus 265 el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~--------~p~~~l~~~~q~ld~~~~rL~~~l~~~~~----- 331 (440)
T COG1570 265 ELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFR--------SPERLLSEQQQRLDELAIRLRRALENQLA----- 331 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4677777777766554 455667777788888665531 12456667777777777777665544333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSK 220 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~ 220 (271)
.+.+-+..+...++..-.. .+. -+.-.-+.+-..|+..|+..+.++..+...|.+. +|..+
T Consensus 332 -----~~~~~~~~l~~rl~~~~~~-------~~~-~~~~l~~~l~~~~~~~l~~~~~~l~~l~~~L~~L--sp~~~ 392 (440)
T COG1570 332 -----LKKQRLERLTQRLNPQIQR-------QQQ-RLQQLERRLDKALRRQLKRKRERLEALVEQLESL--SPLAT 392 (440)
T ss_pred -----HHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Chhhh
Confidence 3333333333222222000 000 0111112233455667777777888888888877 67664
No 349
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.51 E-value=4e+02 Score=20.82 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=23.8
Q ss_pred HHhchhhhhhhHHHHHHHHHHHHHHHH-hhhcccCCCCCCC
Q 024197 71 LQNCKDTLATCQLELEAAKSEIQKWHS-SFQNELFIPPGTS 110 (271)
Q Consensus 71 l~~~~~~~~~~~~~l~~a~~ei~kW~~-~fq~e~~i~a~~~ 110 (271)
|+.--..|-....++..+...|..+.. .-..+.+||-|.+
T Consensus 8 l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~ 48 (120)
T PF02996_consen 8 LQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSG 48 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCC
Confidence 344444555556777888888888886 3344666664443
No 350
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=21.47 E-value=7.2e+02 Score=23.76 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHH
Q 024197 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264 (271)
Q Consensus 185 VNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eE 264 (271)
|+.++.||++=|..++.-+.. +.++||+|==-|+-+..|-.=||.-...-.|.++ .=-.|...+.
T Consensus 218 I~EEl~RL~sHl~~f~~~L~~------------~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~---vVe~K~eiEk 282 (291)
T TIGR00255 218 IAEEIDRLDSHVKEFYNILKK------------GEAVGRKLDFMMQELNRESNTLASKAIDADITNL---AVEMKVLIEK 282 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhc------------CCCcCcchhHHHHHHhHHHHHHHHccCcHHHHHH---HHHHHHHHHH
Confidence 778888888888877776652 3578999988888888888888865544434443 3446888888
Q ss_pred HHhhhc
Q 024197 265 LKSQFE 270 (271)
Q Consensus 265 Lrk~~e 270 (271)
+|-++|
T Consensus 283 iREQVQ 288 (291)
T TIGR00255 283 IKEQIQ 288 (291)
T ss_pred HHHHHh
Confidence 888776
No 351
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=21.42 E-value=5.7e+02 Score=23.01 Aligned_cols=42 Identities=29% Similarity=0.250 Sum_probs=30.4
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 223 KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
+.|=.+.+.+...|-+++..+ ..|+.++.-.|....+++...
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~-----~~Le~ei~~l~~~~~~~~~~~ 219 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVAC-----EELEQEIEQLKRKAAELKENQ 219 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccc
Confidence 357777888888888888665 677777777777776666544
No 352
>PRK14624 hypothetical protein; Provisional
Probab=20.97 E-value=1.1e+02 Score=25.82 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=31.9
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 024197 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS 219 (271)
Q Consensus 181 lDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS 219 (271)
.||-=| |..|-+..++.+.+.+.+|++|....|+..|
T Consensus 2 ~~~~~n--m~~~mkqAq~mQ~km~~~QeeL~~~~v~g~s 38 (115)
T PRK14624 2 FDKIKN--MSEALSNMGNIREKMEEVKKRIASIRVVGDA 38 (115)
T ss_pred cchHHh--HHHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 466556 6788889999999999999999999998887
No 353
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=20.94 E-value=2.3e+02 Score=23.50 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhhhcccCCC--------chhHHHHHHHHHhHHHHHHHHh
Q 024197 198 EKDKKVKELEENIAAVSFTAN--------SKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 198 e~~~kle~aq~ELsAwkFTpd--------S~~GKrLmaKCR~LqeENEELG 240 (271)
.++++++.++.-|..+-+.|+ +..|++|........++.++||
T Consensus 74 ~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 74 RAEKRVERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKELG 124 (124)
T ss_pred HHHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHHcC
Confidence 467788888888888888887 5789999999999999999987
No 354
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.91 E-value=4.9e+02 Score=24.91 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=38.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch
Q 024197 141 EAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSK 220 (271)
Q Consensus 141 E~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~ 220 (271)
|..+-..++...++++.+..++..+..-. .++..=|.+-|.+|+-.+++|..+|. + -|
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de-------------~~Le~KIekkk~ELER~qKRL~sLq~----v--RP--- 221 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDE-------------ANLEAKIEKKKQELERNQKRLQSLQS----V--RP--- 221 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHh----c--Ch---
Confidence 45555555566666666666665553321 12333345555555555555555441 1 22
Q ss_pred hHHHHHHHHHhHHHHHHHH
Q 024197 221 MGKALMAKCKTLQEENDEI 239 (271)
Q Consensus 221 ~GKrLmaKCR~LqeENEEL 239 (271)
..|+--.+|+.|..+|
T Consensus 222 ---AfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 222 ---AFMDEYEKLEEELQKL 237 (267)
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 2566666666666554
No 355
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.37 E-value=1e+02 Score=23.17 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=17.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHhh
Q 024197 245 EGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 245 egria~LE~eLAlqK~~~eELrk~ 268 (271)
+.||..||+.+|.|...+++|-..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~ 26 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDV 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888887777554
No 356
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.29 E-value=5.9e+02 Score=22.29 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhhhChhHHHH-HHHHHHHHHHHHHHHHHH
Q 024197 156 AELKSAVRDLKAQLKPPLMQARRLLLDPAIHEE-FRRLKNLVEEKDKKVKEL 206 (271)
Q Consensus 156 qEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNle-f~rLr~eLee~~~kle~a 206 (271)
+++.++...||.....-...|+.++.-|..-.. |..|.+||.....++.+.
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333344444444444333 455555555555555543
No 357
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.03 E-value=5.4e+02 Score=21.72 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 187 EEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 187 lef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
.-...|-.-|-.+.+..+-+-+.|=..--+++. =+.+.+.|++||++.+..+
T Consensus 69 ~~~~elA~dIi~kakqIe~LIdsLPg~~~see~-----Q~~~i~~L~~E~~~~~~el 120 (144)
T PF11221_consen 69 ENIKELATDIIRKAKQIEYLIDSLPGIEVSEEE-----QLKRIKELEEENEEAEEEL 120 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777666555554 5689999999999999554
Done!