Query 024197
Match_columns 271
No_of_seqs 59 out of 61
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 94.3 2.2 7.5E-05 40.2 16.7 34 64-97 458-491 (597)
2 1c1g_A Tropomyosin; contractIl 92.5 3.5 0.00012 33.1 20.8 8 85-92 43-50 (284)
3 3na7_A HP0958; flagellar bioge 90.8 7.8 0.00027 33.9 14.5 68 63-135 47-114 (256)
4 3oja_B Anopheles plasmodium-re 89.2 5.2 0.00018 37.7 12.7 74 185-270 507-582 (597)
5 3a7p_A Autophagy protein 16; c 87.6 2.2 7.6E-05 36.4 8.1 47 189-240 84-130 (152)
6 2v71_A Nuclear distribution pr 87.3 14 0.00049 32.2 16.3 156 69-259 10-174 (189)
7 1i84_S Smooth muscle myosin he 85.4 4.8 0.00016 42.5 11.0 20 192-211 974-993 (1184)
8 2dfs_A Myosin-5A; myosin-V, in 83.8 6.8 0.00023 41.5 11.2 84 150-244 957-1040(1080)
9 3ol1_A Vimentin; structural ge 83.1 11 0.00036 30.1 9.7 86 152-260 19-104 (119)
10 3na7_A HP0958; flagellar bioge 82.8 24 0.00081 30.8 14.7 80 122-212 36-115 (256)
11 3ol1_A Vimentin; structural ge 82.0 1.7 5.9E-05 34.7 4.7 89 61-170 19-107 (119)
12 1ci6_A Transcription factor AT 81.1 1.7 5.8E-05 31.3 4.0 39 222-265 25-63 (63)
13 2v71_A Nuclear distribution pr 78.6 33 0.0011 29.9 16.4 104 115-243 18-125 (189)
14 1c1g_A Tropomyosin; contractIl 77.4 25 0.00087 28.0 21.8 24 190-213 135-158 (284)
15 3s4r_A Vimentin; alpha-helix, 75.8 7.6 0.00026 29.9 6.5 70 131-208 8-77 (93)
16 2dfs_A Myosin-5A; myosin-V, in 71.1 34 0.0011 36.3 12.0 21 246-266 1023-1043(1080)
17 3nmd_A CGMP dependent protein 70.4 13 0.00046 28.0 6.5 46 123-168 21-69 (72)
18 1m1j_B Fibrinogen beta chain; 65.5 75 0.0026 31.0 12.3 49 118-166 100-148 (464)
19 3nmd_A CGMP dependent protein 60.6 28 0.00097 26.2 6.6 28 142-169 36-63 (72)
20 3q8t_A Beclin-1; autophagy, AT 59.5 58 0.002 25.0 11.2 56 112-167 5-61 (96)
21 2eqb_B RAB guanine nucleotide 59.3 64 0.0022 25.5 11.6 63 130-211 31-93 (97)
22 3hnw_A Uncharacterized protein 57.0 79 0.0027 25.8 9.5 67 132-211 68-134 (138)
23 1l8d_A DNA double-strand break 56.4 62 0.0021 24.4 9.2 65 142-210 20-87 (112)
24 3swk_A Vimentin; cytoskeleton, 54.5 64 0.0022 24.3 7.8 84 65-169 3-86 (86)
25 2lw1_A ABC transporter ATP-bin 54.2 65 0.0022 24.0 8.4 22 188-209 57-78 (89)
26 3k29_A Putative uncharacterize 54.2 99 0.0034 26.7 9.7 99 65-165 26-125 (169)
27 3qh9_A Liprin-beta-2; coiled-c 46.0 51 0.0017 25.4 6.0 55 152-212 25-79 (81)
28 3vkg_A Dynein heavy chain, cyt 44.7 4E+02 0.014 32.1 15.5 23 190-212 2010-2032(3245)
29 3vkg_A Dynein heavy chain, cyt 44.7 4.9E+02 0.017 31.4 20.2 19 225-243 2054-2072(3245)
30 3he5_A Synzip1; heterodimeric 43.2 32 0.0011 23.9 4.1 38 225-262 8-47 (49)
31 2dq0_A Seryl-tRNA synthetase; 42.0 1.4E+02 0.0047 28.6 9.7 70 144-213 29-102 (455)
32 1go4_E MAD1 (mitotic arrest de 41.3 1.3E+02 0.0045 23.8 8.0 62 182-243 7-91 (100)
33 2zqm_A Prefoldin beta subunit 41.2 1.1E+02 0.0038 22.9 9.0 40 130-169 11-50 (117)
34 4dk0_A Putative MACA; alpha-ha 39.7 1.2E+02 0.0041 26.5 8.4 36 66-101 74-109 (369)
35 2ykt_A Brain-specific angiogen 39.3 2E+02 0.007 25.4 11.0 105 53-161 94-217 (253)
36 1wt6_A Myotonin-protein kinase 39.1 82 0.0028 24.3 6.2 40 118-157 31-70 (81)
37 1wp7_A Fusion protein; fusion 39.1 1.2E+02 0.0041 23.8 7.2 40 62-101 6-45 (89)
38 1g6u_A Domain swapped dimer; d 39.0 94 0.0032 21.5 6.9 44 157-214 4-47 (48)
39 1nfn_A Apolipoprotein E3; lipi 37.9 1.8E+02 0.006 24.6 8.8 92 115-213 32-125 (191)
40 1hjb_A Ccaat/enhancer binding 37.9 95 0.0033 23.8 6.5 44 135-182 32-75 (87)
41 3mq9_A Bone marrow stromal ant 37.0 2.5E+02 0.0084 25.7 10.7 99 150-271 370-468 (471)
42 3lay_A Zinc resistance-associa 36.8 1.9E+02 0.0066 24.4 10.3 46 151-202 90-135 (175)
43 1wle_A Seryl-tRNA synthetase; 36.2 1.1E+02 0.0038 29.8 8.2 69 144-212 68-148 (501)
44 3ajw_A Flagellar FLIJ protein; 35.7 1.5E+02 0.0051 22.8 8.1 36 126-161 20-55 (150)
45 3ghg_A Fibrinogen alpha chain; 35.4 46 0.0016 33.5 5.4 103 150-264 54-163 (562)
46 1wrd_A TOM1, target of MYB pro 34.4 1.6E+02 0.0054 22.7 9.8 52 188-241 7-64 (103)
47 3fpp_A Macrolide-specific effl 34.1 1E+02 0.0036 26.7 7.0 37 65-101 72-108 (341)
48 1fxk_A Prefoldin; archaeal pro 34.0 1.4E+02 0.0048 22.0 9.3 38 132-169 8-45 (107)
49 3ok8_A Brain-specific angiogen 33.5 2.5E+02 0.0087 24.8 10.3 55 216-270 67-125 (222)
50 2p22_C Protein SRN2; endosome, 33.2 2.3E+02 0.0079 24.3 13.4 73 191-269 101-174 (192)
51 3u1c_A Tropomyosin alpha-1 cha 33.0 1.6E+02 0.0056 22.5 8.7 65 184-265 6-70 (101)
52 2xs1_A Programmed cell death 6 32.7 3.8E+02 0.013 26.6 21.4 192 64-269 443-639 (704)
53 2b5u_A Colicin E3; high resolu 32.2 4E+02 0.014 26.8 14.5 107 105-220 274-383 (551)
54 3mq7_A Bone marrow stromal ant 31.2 2.2E+02 0.0075 23.4 8.7 49 72-134 21-69 (121)
55 3htk_A Structural maintenance 30.4 1.1E+02 0.0037 20.8 5.2 32 68-99 25-56 (60)
56 3i00_A HIP-I, huntingtin-inter 30.4 1.6E+02 0.0055 23.6 7.0 13 229-241 70-82 (120)
57 4dzn_A Coiled-coil peptide CC- 30.3 65 0.0022 20.8 3.7 26 188-213 3-28 (33)
58 3tnu_B Keratin, type II cytosk 29.8 2E+02 0.0069 22.5 8.4 18 145-162 81-98 (129)
59 1zxa_A CGMP-dependent protein 29.5 70 0.0024 23.7 4.3 31 143-173 29-59 (67)
60 2wt7_A Proto-oncogene protein 29.0 99 0.0034 21.8 4.9 35 223-262 26-60 (63)
61 3rq9_A TSI2, type VI secretion 28.9 1.2E+02 0.004 23.4 5.6 50 221-270 4-56 (85)
62 3qne_A Seryl-tRNA synthetase, 28.9 1.9E+02 0.0066 28.2 8.5 69 145-213 32-104 (485)
63 2fyz_A Fusion protein, fusion 28.9 1.3E+02 0.0044 22.0 5.6 46 61-107 16-61 (63)
64 2dq3_A Seryl-tRNA synthetase; 28.8 1.2E+02 0.004 28.6 6.8 68 145-212 29-100 (425)
65 3r2p_A Apolipoprotein A-I; amp 28.4 75 0.0026 26.3 4.9 91 115-211 15-106 (185)
66 3uky_C Nuclear CAP-binding pro 28.3 23 0.0008 23.0 1.3 14 25-39 3-16 (32)
67 2lw1_A ABC transporter ATP-bin 28.0 1.8E+02 0.0063 21.5 7.2 53 187-239 22-75 (89)
68 2oku_A Acyl-COA dehydrogenase 27.9 28 0.00097 28.9 2.1 31 52-82 2-35 (131)
69 3va9_A Sensor histidine kinase 27.8 2.3E+02 0.0077 22.4 8.9 69 182-251 74-147 (164)
70 1nkp_B MAX protein, MYC proto- 27.4 1.1E+02 0.0037 22.3 5.1 32 117-148 46-77 (83)
71 1t6f_A Geminin; coiled-coil, c 27.3 83 0.0028 21.1 3.9 29 233-266 6-34 (37)
72 3euj_A Chromosome partition pr 26.4 40 0.0014 32.6 3.2 36 184-219 251-286 (483)
73 1gk4_A Vimentin; intermediate 25.9 2E+02 0.0069 21.2 7.0 45 119-163 2-50 (84)
74 2q73_A MAZG, hypothetical prot 25.7 1.2E+02 0.004 22.7 5.1 39 203-246 3-41 (100)
75 1fyj_A Multifunctional aminoac 25.4 1.7E+02 0.0058 20.2 5.9 44 149-199 3-46 (57)
76 3stq_A TSI2, putative uncharac 25.3 1.3E+02 0.0044 23.8 5.3 50 221-270 29-81 (102)
77 1nlw_A MAD protein, MAX dimeri 25.2 1.2E+02 0.004 22.5 5.0 32 117-148 46-77 (80)
78 1go4_E MAD1 (mitotic arrest de 25.2 2.3E+02 0.0077 22.4 6.8 43 170-213 52-94 (100)
79 1jnm_A Proto-oncogene C-JUN; B 25.0 57 0.0019 22.9 3.0 32 224-260 26-57 (62)
80 3u06_A Protein claret segregat 25.0 2.1E+02 0.0071 27.0 7.8 55 114-168 6-60 (412)
81 3ni0_A Bone marrow stromal ant 24.4 1.1E+02 0.0038 24.4 4.8 39 63-101 47-85 (99)
82 3opc_A Uncharacterized protein 24.4 2.6E+02 0.0089 22.0 12.0 55 114-168 11-66 (154)
83 2f1m_A Acriflavine resistance 24.3 3.1E+02 0.011 22.9 9.8 34 67-100 58-91 (277)
84 3t98_B Nucleoporin NUP58/NUP45 24.1 2.5E+02 0.0084 21.6 8.3 77 187-269 12-88 (93)
85 1nkp_A C-MYC, MYC proto-oncoge 23.7 1.5E+02 0.005 22.3 5.3 30 137-166 57-86 (88)
86 3tnu_A Keratin, type I cytoske 23.1 2.8E+02 0.0095 21.9 7.6 93 158-270 15-108 (131)
87 1gu4_A CAAT/enhancer binding p 22.9 2.1E+02 0.0071 21.4 5.9 44 134-181 31-74 (78)
88 1zza_A Stannin, AG8_1; helix, 22.9 80 0.0027 24.4 3.7 32 100-131 48-79 (90)
89 3efg_A Protein SLYX homolog; x 22.0 46 0.0016 24.9 2.1 24 245-268 13-36 (78)
90 3r4h_A Coiled coil helix CC-TE 21.8 1.1E+02 0.0039 19.7 3.7 26 189-214 4-29 (34)
91 4etp_A Kinesin-like protein KA 21.7 2.9E+02 0.0098 25.9 8.0 55 114-168 6-60 (403)
92 1ik9_A DNA repair protein XRCC 21.6 3.1E+02 0.01 23.8 7.6 26 186-211 174-199 (213)
93 2yfa_A MCPS, methyl-accepting 21.6 3.3E+02 0.011 22.2 16.0 98 147-245 80-196 (258)
94 3iyn_Q Protein IX, PIX, hexon- 21.3 96 0.0033 25.9 4.1 29 142-170 101-129 (140)
95 1ci6_A Transcription factor AT 20.9 2.3E+02 0.0077 20.0 6.6 23 143-165 27-49 (63)
96 1svf_A Protein (fusion glycopr 20.6 1.9E+02 0.0065 21.2 5.1 40 61-100 13-52 (64)
97 1uii_A Geminin; human, DNA rep 20.5 1.1E+02 0.0038 23.6 4.1 31 233-268 45-75 (83)
98 2q5z_A MAZG, hypothetical prot 20.4 1.8E+02 0.0063 22.3 5.4 38 204-246 24-61 (114)
99 2xus_A Breast cancer metastasi 20.4 64 0.0022 22.7 2.4 22 139-160 25-46 (49)
100 3mq7_A Bone marrow stromal ant 20.1 2.7E+02 0.0092 22.9 6.4 32 229-265 73-104 (121)
101 2djv_A Methionyl-tRNA syntheta 20.1 2.7E+02 0.0093 20.6 6.1 46 148-200 15-60 (79)
102 3cve_A Homer protein homolog 1 20.0 1.6E+02 0.0054 22.1 4.7 37 224-265 4-40 (72)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.26 E-value=2.2 Score=40.24 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=22.5
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHH
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHS 97 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~ 97 (271)
|-.++..++..+..+...+..+.....+|+.++.
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4445666666666666667777777777777663
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.49 E-value=3.5 Score=33.12 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 024197 85 LEAAKSEI 92 (271)
Q Consensus 85 l~~a~~ei 92 (271)
+..+..++
T Consensus 43 ~~~~~~~~ 50 (284)
T 1c1g_A 43 LVSLQKKL 50 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.83 E-value=7.8 Score=33.88 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=36.5
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHH
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLE 135 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~ 135 (271)
-|-.++..+...+..+.....+++.+..-|.+++..+.+. ..+.+-.-+..+|..++.--..+...+.
T Consensus 47 ~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-----~~~kE~~aL~kEie~~~~~i~~lE~eil 114 (256)
T 3na7_A 47 AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-----KSERELRSLNIEEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----SSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666777777777777555331 1344444444455444444444443333
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.20 E-value=5.2 Score=37.71 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcc--cchhhhHHHHHHHHHH
Q 024197 185 IHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG--ETHQLSVKLALQKSLN 262 (271)
Q Consensus 185 VNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lseg--ria~LE~eLAlqK~~~ 262 (271)
+..++..++........++...+.+. ..++..++.|++|+++|-+.+.+- ++.+|..+++..+...
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEA------------DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhh------------hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443 447888888888988888866543 4456666666777766
Q ss_pred HHHHhhhc
Q 024197 263 AELKSQFE 270 (271)
Q Consensus 263 eELrk~~e 270 (271)
++|-..++
T Consensus 575 ~~l~~~~~ 582 (597)
T 3oja_B 575 KQLEAKKN 582 (597)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 66655543
No 5
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.63 E-value=2.2 Score=36.36 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHh
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELG 240 (271)
+..|..+|.++.+-++..++|+.+.+..-+. +=.|.+.|+.||.+|=
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~-----lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNV-----LQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 4556677777777778888888777655444 6677888888887763
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.32 E-value=14 Score=32.20 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 024197 69 ESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF 148 (271)
Q Consensus 69 ~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rL 148 (271)
+-+.--|.....++..+..++.|+.-+. .+=++.|+.|-.+|..+.+|..-|..++
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFq------------------------esSrELE~ELE~eL~~~Ek~~~~L~~~~ 65 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQ------------------------EGSRELEAELEAQLVQAEQRNRDLQADN 65 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555556666666665554 3347789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH---HHHHHHHHHhh-hhcccCCCch--hH
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK---DKKVKELEENI-AAVSFTANSK--MG 222 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~---~~kle~aq~EL-sAwkFTpdS~--~G 222 (271)
+.+..|+..+++-+...+..+....+.|.. ++..|+...... -.++++++++| .+.+-+..|. ++
T Consensus 66 ~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~---------el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 66 QRLKYEVEALKEKLEHQYAQSYKQVSVLED---------DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 999999999998887776654433332221 223333332222 22334444444 1111122221 11
Q ss_pred ---HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHH
Q 024197 223 ---KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQK 259 (271)
Q Consensus 223 ---KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK 259 (271)
-..|-+.=.|+.|++| |....-.+++|--++.-+|
T Consensus 137 ~kln~aiEr~alLE~El~E--Ke~l~~~~QRLkdE~rDLk 174 (189)
T 2v71_A 137 QRLNQAIERNAFLESELDE--KESLLVSVQRLKDEARDLR 174 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 1246666677777776 4444555666655554443
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.43 E-value=4.8 Score=42.52 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024197 192 LKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 192 Lr~eLee~~~kle~aq~ELs 211 (271)
+..++...+.+++.++.++.
T Consensus 974 l~~e~~~le~~l~~l~~el~ 993 (1184)
T 1i84_S 974 LQLEKVTADGKIKKMEDDIL 993 (1184)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.78 E-value=6.8 Score=41.54 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q 024197 150 KREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKC 229 (271)
Q Consensus 150 tKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKC 229 (271)
.+++|+.+++..+.+++....- ..++... + -....++..|+.++....++.+.+++.+.-.+ ..|-.++
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e-~~~~~~~-v-~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~--------~~L~~kv 1025 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEE-AKNATNR-V-LSLQEEIAKLRKELHQTQTEKKTIEEWADKYK--------HETEQLV 1025 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHH-HHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 5667777777777777654211 1111100 0 01223334444444444444444444433222 3677888
Q ss_pred HhHHHHHHHHhhhhh
Q 024197 230 KTLQEENDEIGRQNE 244 (271)
Q Consensus 230 R~LqeENEELGr~ls 244 (271)
..|..||..|-.++.
T Consensus 1026 ~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1026 SELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999988887764
No 9
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.11 E-value=11 Score=30.07 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHh
Q 024197 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKT 231 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~ 231 (271)
+.+|.+++.+|-.+-.. --.+-+++..++..++.++.|++.-.+.-..+ ---+..-++.
T Consensus 19 e~~I~~LR~qid~~~~e-------------~a~l~leldn~~~~~edfk~KyE~E~~~r~~~--------E~di~~lrK~ 77 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTND-------------KARVEVERDNLAEDIMRLREKLQEEMLQREEA--------ENTLQSFRQD 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------HHHHHHhhhc
Confidence 45566666666555222 11245667777888888888776532211110 0011111111
Q ss_pred HHHHHHHHhhhhhcccchhhhHHHHHHHH
Q 024197 232 LQEENDEIGRQNEEGETHQLSVKLALQKS 260 (271)
Q Consensus 232 LqeENEELGr~lsegria~LE~eLAlqK~ 260 (271)
+ ...-|.|.=.+++|..|.-+|...|+
T Consensus 78 l--D~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 78 V--DNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23345555566677777777776654
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.75 E-value=24 Score=30.81 Aligned_cols=80 Identities=11% Similarity=0.237 Sum_probs=48.5
Q ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHH
Q 024197 122 TLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDK 201 (271)
Q Consensus 122 ~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~ 201 (271)
.|..--+.++.++...+..=.-+-..+..++.+|.++...+...+.... ++ .=|-+|..|..+|+..+.
T Consensus 36 ~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~-------~v----~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 36 KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS-------EI----KSERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HC----SSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cc----CCHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444555666777777777777766655432 11 135678888888888888
Q ss_pred HHHHHHHhhhh
Q 024197 202 KVKELEENIAA 212 (271)
Q Consensus 202 kle~aq~ELsA 212 (271)
+...+.+++..
T Consensus 105 ~i~~lE~eile 115 (256)
T 3na7_A 105 RSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.05 E-value=1.7 Score=34.72 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=59.1
Q ss_pred hHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhH
Q 024197 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKK 140 (271)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krR 140 (271)
-+.|=.||..|......=+.+..++..++..++.|+.-+.+|--. -..+.+++..||.- +
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~-------r~~~E~di~~lrK~-------l------ 78 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ-------REEAENTLQSFRQD-------V------ 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------H------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHhhhc-------c------
Confidence 357889999999998899999999999999999999877776221 22344555444421 1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Q 024197 141 EAAFIVTFAKREQEIAELKSAVRDLKAQLK 170 (271)
Q Consensus 141 E~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ 170 (271)
+...+ .-+.+|.+++-++-.|..||..+.
T Consensus 79 D~~~l-~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 79 DNASL-ARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 224566666666666666666554
No 12
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.08 E-value=1.7 Score=31.34 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=32.1
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197 222 GKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (271)
Q Consensus 222 GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eEL 265 (271)
...|..++..|..+|.+|.. +|..|+.++..+|..+.|+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~-----~i~~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKE-----RADSLAKEIQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhC
Confidence 35688899999999999995 4589999999998887653
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.61 E-value=33 Score=29.89 Aligned_cols=104 Identities=23% Similarity=0.371 Sum_probs=67.2
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHH
Q 024197 115 LVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKN 194 (271)
Q Consensus 115 l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~ 194 (271)
...++.+.+...+..|.+-...++-=|.-|-.-|...|+.+.++...+.-|+.- +..+|.
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E--------------------~e~~k~ 77 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYE--------------------VEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHH
Confidence 445677788888999998888888888777666666666666666665555332 233333
Q ss_pred HHHHHHHH----HHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhh
Q 024197 195 LVEEKDKK----VKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 195 eLee~~~k----le~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~l 243 (271)
++...... ...++.+++..+ ..-..|..+||.|.+.|..|-|..
T Consensus 78 K~~~~~~e~~~~~~~Lq~el~~l~-----~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 78 KLEHQYAQSYKQVSVLEDDLSQTR-----AIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33333333 333344444332 334568899999999999998765
No 14
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=77.43 E-value=25 Score=27.97 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 190 RRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 190 ~rLr~eLee~~~kle~aq~ELsAw 213 (271)
..+...+......+..++..+..+
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~~ 158 (284)
T 1c1g_A 135 QKDEEKMEIQEIQLKEAKHIAEDA 158 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 15
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.75 E-value=7.6 Score=29.93 Aligned_cols=70 Identities=24% Similarity=0.228 Sum_probs=51.1
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024197 131 KEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEE 208 (271)
Q Consensus 131 keQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ 208 (271)
|+|++...-|=+.|+-+.=.+||+...|.+.|..|+... | .-+.|...-+|..||..|+.....-..+.-
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~-~-------~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~ 77 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG-K-------SRLGDLYEEEMRELRRQVDQLTNDKARVEV 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777778888888889999999999999997642 2 135566677888888888877766544443
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.06 E-value=34 Score=36.33 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=12.5
Q ss_pred ccchhhhHHHHHHHHHHHHHH
Q 024197 246 GETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 246 gria~LE~eLAlqK~~~eELr 266 (271)
-++..|+.+.+.++.++++|.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665554
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.41 E-value=13 Score=28.02 Aligned_cols=46 Identities=15% Similarity=0.380 Sum_probs=27.9
Q ss_pred hHhhHHHHHHHHHHHHhHHHH---HHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 123 LKSSEEMLKEQLEKAKKKEAA---FIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 123 Lk~sE~~LkeQl~e~krRE~v---lv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+++.+.-|+.-..+.+.|+.. +..+|..|+.+|++|++++..+|++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 566666666666666666643 4455666666666666666555544
No 18
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=65.47 E-value=75 Score=31.04 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=24.2
Q ss_pred HHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 118 ~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
..|+.|+..-.+|.+.-.++..-...+...+..+++++.+....|++..
T Consensus 100 ~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~ 148 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 3344444444444444444444444455555555555555555555543
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.59 E-value=28 Score=26.25 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=22.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 142 AAFIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 142 ~vlv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
...-.+|..+|++|++.-..|+.|+...
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556689999999999999999887764
No 20
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=59.47 E-value=58 Score=25.05 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=43.2
Q ss_pred ChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH-HHHHHHH
Q 024197 112 EPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKS-AVRDLKA 167 (271)
Q Consensus 112 ~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~s-qi~dlK~ 167 (271)
+...+...|..|+.-|+.|-++|.+.-+-+..+-.-|...+.|...+.. .-..||.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~e 61 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQRE 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4456677888888888888888888888888888888888888887765 4455544
No 21
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.31 E-value=64 Score=25.50 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=38.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024197 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEEN 209 (271)
Q Consensus 130 LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~E 209 (271)
|++.|.+-+.+=...-......++|+.+|.++|=+ -| |.+...=|.+-..++.++++++.+
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe------------------EA-N~MVa~ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------------------EA-NNMVADARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444444445566778888888888876432 22 222222266667777788888777
Q ss_pred hh
Q 024197 210 IA 211 (271)
Q Consensus 210 Ls 211 (271)
|.
T Consensus 92 L~ 93 (97)
T 2eqb_B 92 LR 93 (97)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=57.03 E-value=79 Score=25.81 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 132 EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 132 eQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
..|-+.+++=.-|...+..++.|+.+++..+..++.... .+.-++..|+.++.+.+.++..++.+|.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e-------------~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE-------------SSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 23
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.45 E-value=62 Score=24.39 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH--hcCCchHHHHHhhhChh-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024197 142 AAFIVTFAKREQEIAELKSAVRDLKA--QLKPPLMQARRLLLDPA-IHEEFRRLKNLVEEKDKKVKELEENI 210 (271)
Q Consensus 142 ~vlv~rLAtKEQEiqEl~sqi~dlK~--~~~ps~~qlR~~LlDPA-VNlef~rLr~eLee~~~kle~aq~EL 210 (271)
.-|...++..+.++.++...+..+.. ..+|.= ...++|. .+..+.....++.+...++..+..++
T Consensus 20 ~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvC----gs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i 87 (112)
T 1l8d_A 20 NEITQRIGELKNKIGDLKTAIEELKKAKGKCPVC----GRELTDEHREELLSKYHLDLNNSKNTLAKLIDRK 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTT----CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC----CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677778888888888888854 225531 1234443 23455666666666666666555553
No 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=54.46 E-value=64 Score=24.32 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=60.8
Q ss_pred HhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHH
Q 024197 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAF 144 (271)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vl 144 (271)
=.||.-+......=+.+..++..++..++.|+.-+.+|-.. -..+.+++..||.-=. .+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~-------R~~~E~d~~~LrkdvD-------------~a~ 62 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ-------REEAENTLQSFRQDVD-------------NAS 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTTHH-------------HHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHH-------------HHH
Confidence 35888888888888899999999999999999888877433 2345666666654322 233
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
+.| +.+|..+.-++..|..||..|
T Consensus 63 l~r-~dLE~kvesL~eEl~fLkk~h 86 (86)
T 3swk_A 63 LAR-LDLERKVESLQEEIAFLKKLH 86 (86)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 333 678888888888888887654
No 25
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=54.25 E-value=65 Score=23.98 Aligned_cols=22 Identities=5% Similarity=0.142 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024197 188 EFRRLKNLVEEKDKKVKELEEN 209 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~E 209 (271)
.+..+-.++.+.+.+++.+-..
T Consensus 57 ~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 57 QTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555433
No 26
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=54.16 E-value=99 Score=26.72 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=75.4
Q ss_pred HhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChh-hhHHHHHhhHhhHHHHHHHHHHHHhHHHH
Q 024197 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPR-LVINYLQTLKSSEEMLKEQLEKAKKKEAA 143 (271)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~-l~~~~l~~Lk~sE~~LkeQl~e~krRE~v 143 (271)
-.-+..|+.-+..|+.|.+++...+..-..=-+.+.++ +--|+|++.- ..-.||.-|++-+..+.++..+..++-.+
T Consensus 26 ~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~--~d~gtt~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~ 103 (169)
T 3k29_A 26 KEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQ--LDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLA 103 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888999999999988887764435455555 3356655543 33468888999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 024197 144 FIVTFAKREQEIAELKSAVRDL 165 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dl 165 (271)
....|....++++..+-+..-+
T Consensus 104 e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 104 ASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877776655
No 27
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=45.97 E-value=51 Score=25.45 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 152 EQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 152 EQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
=|||-+++--|.+|=...--.--.|+++= .+|.-|+..|+..+..++.++.+|.+
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK------~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATK------AEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 35666666666666333322223344332 78899999999999999999998865
No 28
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.68 E-value=4e+02 Score=32.11 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024197 190 RRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 190 ~rLr~eLee~~~kle~aq~ELsA 212 (271)
.=+|.+|.+.+.+++.++.+|.+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~ 2032 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDE 2032 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554
No 29
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.66 E-value=4.9e+02 Score=31.37 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=9.5
Q ss_pred HHHHHHhHHHHHHHHhhhh
Q 024197 225 LMAKCKTLQEENDEIGRQN 243 (271)
Q Consensus 225 LmaKCR~LqeENEELGr~l 243 (271)
.+++...|+.|-+...+.+
T Consensus 2054 ~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2054 LIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544433
No 30
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=43.21 E-value=32 Score=23.90 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHHHhhhhhcc--cchhhhHHHHHHHHHH
Q 024197 225 LMAKCKTLQEENDEIGRQNEEG--ETHQLSVKLALQKSLN 262 (271)
Q Consensus 225 LmaKCR~LqeENEELGr~lseg--ria~LE~eLAlqK~~~ 262 (271)
|-...-.|..||+-|.+...-- -|+-||.++|..++.+
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4445567889999888765432 2455566665555444
No 31
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.00 E-value=1.4e+02 Score=28.58 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh---C-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL---D-PAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll---D-PAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
++-.|-.+.++-..+..++..|+..++.-+.+.-...- | .++-.....|+.+|.+.+.++..++++|...
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666555444333322211 1 3455566778888888888888888777543
No 32
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.31 E-value=1.3e+02 Score=23.77 Aligned_cols=62 Identities=21% Similarity=0.131 Sum_probs=38.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------cccCCCc------------hhHHHHHHHHHhHHHHHHH
Q 024197 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAA-----------VSFTANS------------KMGKALMAKCKTLQEENDE 238 (271)
Q Consensus 182 DPAVNlef~rLr~eLee~~~kle~aq~ELsA-----------wkFTpdS------------~~GKrLmaKCR~LqeENEE 238 (271)
.|.-+..+..||.+|+..+.+...+..+... =.|+|.. ..=+..-.....|+.|++-
T Consensus 7 ~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~er 86 (100)
T 1go4_E 7 FLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECER 86 (100)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888887777776666655432 3566642 1223445667788999998
Q ss_pred Hhhhh
Q 024197 239 IGRQN 243 (271)
Q Consensus 239 LGr~l 243 (271)
|-..+
T Consensus 87 Lr~~v 91 (100)
T 1go4_E 87 LRGLL 91 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87544
No 33
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.20 E-value=1.1e+02 Score=22.87 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 130 LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
+-.+++..+.+-..+...+..++.++.++...+.+|...-
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~ 50 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP 50 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4447788888889999999999999999999999997663
No 34
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=39.70 E-value=1.2e+02 Score=26.49 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=20.8
Q ss_pred hhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 66 SLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 66 ~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
.++..|...+..|+..+++++.|+.++++++..++.
T Consensus 74 ~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~ 109 (369)
T 4dk0_A 74 TRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQ 109 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455555555556666666666666777655543
No 35
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=39.30 E-value=2e+02 Score=25.41 Aligned_cols=105 Identities=12% Similarity=0.178 Sum_probs=63.8
Q ss_pred hhcCCCchhHHHHhhHHHHHhchhhhhhh-----------HHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHH
Q 024197 53 EETAPGVATGMILSLRESLQNCKDTLATC-----------QLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQ 121 (271)
Q Consensus 53 ~~~~~~~~t~~il~lr~~l~~~~~~~~~~-----------~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~ 121 (271)
++-........|..|...++..+..+.+. ..+|+-|.+++.||+.--+ -+-+.+++++.+..+++
T Consensus 94 ~~~~~~~~~~li~pL~~kie~d~K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k----~gk~~~~~~~~~~~~~e 169 (253)
T 2ykt_A 94 EEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQ----GSKNPQKYSDKELQYID 169 (253)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcc----CCCCcchhHHHHHHHHH
Confidence 33333344556788888888777666643 2456777788888873332 13344556677777887
Q ss_pred hhHhhH--------HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Q 024197 122 TLKSSE--------EMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSA 161 (271)
Q Consensus 122 ~Lk~sE--------~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sq 161 (271)
.+.+-+ ..++.=|.|-++|=-.||.++...=.....+..+
T Consensus 170 ~v~~~~~~le~~~~~~lr~aL~EERrRycflv~~~~~v~~~~~~~h~~ 217 (253)
T 2ykt_A 170 AISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSK 217 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764433 4566667777888777888777655555555544
No 36
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.13 E-value=82 Score=24.29 Aligned_cols=40 Identities=8% Similarity=0.235 Sum_probs=19.4
Q ss_pred HHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Q 024197 118 NYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAE 157 (271)
Q Consensus 118 ~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqE 157 (271)
.+|..+|+.--.+..+|.++..|=.-|+.-+-.++.+|.+
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555544444445555555554
No 37
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=39.06 E-value=1.2e+02 Score=23.77 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=30.2
Q ss_pred HHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 62 GMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 62 ~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
..|++|++|+++--..+-.++..+..-.-.|++-...+.+
T Consensus 6 anIlrLKeSI~~TNeAV~EVt~glsqlaVAIqaIQD~IN~ 45 (89)
T 1wp7_A 6 DNINKLKSSIESTNEAVVKLQETAEKTVYVLTALQDYGGS 45 (89)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999999988888888877778776643333
No 38
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.99 E-value=94 Score=21.46 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197 157 ELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVS 214 (271)
Q Consensus 157 El~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwk 214 (271)
-+++.++.+|...-+ | .++..|.++|+..++++..++..|+|.+
T Consensus 4 alkselqalkkegfs-----------p---eelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 4 ALKSELQALKKEGFS-----------P---EELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHTTCS-----------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCC-----------H---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666555332 2 4667888999999999999999998875
No 39
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=37.95 E-value=1.8e+02 Score=24.60 Aligned_cols=92 Identities=21% Similarity=0.319 Sum_probs=59.0
Q ss_pred hhHHHHHhhHhhHHHHHHHH--HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHH
Q 024197 115 LVINYLQTLKSSEEMLKEQL--EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRL 192 (271)
Q Consensus 115 l~~~~l~~Lk~sE~~LkeQl--~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rL 192 (271)
.+-.|+..++.+=.++.+|+ ....+-=+.+ +.+-+.++.+++.+++....|-+..++. -+-|.+..+-.+|
T Consensus 32 ~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l------~~e~~~~l~~~~~~l~~qL~P~~~e~~~-~l~~~~e~lr~~l 104 (191)
T 1nfn_A 32 RFWDYLRWVQTLSEQVQEELLSSQVTQELRAL------MDETMKELKAYKSELEEQLTPVAEETRA-RLSKELQAAQARL 104 (191)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHH------HHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH------HHHHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHH
Confidence 45567777777777777777 4444322222 2344556666788888888886555554 5678888888999
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 024197 193 KNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 193 r~eLee~~~kle~aq~ELsAw 213 (271)
+..+++.+.++.---++|.+.
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~ 125 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAM 125 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999998664
No 40
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.88 E-value=95 Score=23.79 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC
Q 024197 135 EKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLD 182 (271)
Q Consensus 135 ~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlD 182 (271)
...+.||..+..+...+++|...|+.+|..|+... ..||++|++
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~----~~Lr~ll~~ 75 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSREL----STLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 56777888888888888888888888888876552 345555543
No 41
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.96 E-value=2.5e+02 Score=25.68 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q 024197 150 KREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKC 229 (271)
Q Consensus 150 tKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKC 229 (271)
+-++-+.++..+++.+ +....-.=........|.++|.+.++.+-+++.+-+.++-| .|+-.
T Consensus 370 t~eeal~~~~~~i~~~----------l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 431 (471)
T 3mq9_A 370 TVDEALKDAQTRITAA----------RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHT--------VMALM 431 (471)
T ss_dssp CHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred CHHHHHHHHHHHHHHH----------HHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchh--------HHHHH
Q ss_pred HhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhcC
Q 024197 230 KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEG 271 (271)
Q Consensus 230 R~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~ee 271 (271)
..|..+-.. |-. ||+.||.++..+....++++-++++
T Consensus 432 ~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 432 ASLDAEKAQ-GQK----KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHH
No 42
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.79 E-value=1.9e+02 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 024197 151 REQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKK 202 (271)
Q Consensus 151 KEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~k 202 (271)
+-+++...+.+++.|-..-+|+.++++. +.-++..||.++.....+
T Consensus 90 Lr~ql~akr~EL~aL~~a~~~DeakI~a------L~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTASSPDTAKINA------VAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3566777788888887777777777663 455677777777665444
No 43
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.20 E-value=1.1e+02 Score=29.79 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh--C----------hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL--D----------PAIHEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll--D----------PAVNlef~rLr~eLee~~~kle~aq~ELs 211 (271)
.+-.|-.+.++-.++..++..|+..++.-+.+.-...- + .++-.+...|+.+|.+.+.++.+++++|.
T Consensus 68 ~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 68 DLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888887776554433332221 1 14445567777888888888888887774
Q ss_pred h
Q 024197 212 A 212 (271)
Q Consensus 212 A 212 (271)
.
T Consensus 148 ~ 148 (501)
T 1wle_A 148 L 148 (501)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=35.70 E-value=1.5e+02 Score=22.79 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Q 024197 126 SEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSA 161 (271)
Q Consensus 126 sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sq 161 (271)
.++..+.+|..+..+-.-...+|..++....++...
T Consensus 20 ~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~ 55 (150)
T 3ajw_A 20 EVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSN 55 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666665555555555555555555443
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.43 E-value=46 Score=33.48 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhcccCCCchhH
Q 024197 150 KREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVK-------ELEENIAAVSFTANSKMG 222 (271)
Q Consensus 150 tKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle-------~aq~ELsAwkFTpdS~~G 222 (271)
.+-+.-+++...|++||.....- +--+.-++-.++..+..||..+.....-.. +++..+..++-+=++++
T Consensus 54 lLdkqErDltkrINELKnqLEdl--sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl- 130 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEY--QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV- 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-
T ss_pred hHHhhcCcHHHHHHHHHHHHHHH--HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHH
Q 024197 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAE 264 (271)
Q Consensus 223 KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eE 264 (271)
+.++.||.=.+++- -+|++||..|..+-.++..
T Consensus 131 ----snIrvLQsnLedq~-----~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 131 ----QHIQLLQKNVRAQL-----VDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp ----HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccc
No 46
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=34.41 E-value=1.6e+02 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCch------hHHHHHHHHHhHHHHHHHHhh
Q 024197 188 EFRRLKNLVEEKDKKVKELEENIAAVSFTANSK------MGKALMAKCKTLQEENDEIGR 241 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~------~GKrLmaKCR~LqeENEELGr 241 (271)
-+.+++.+|+..+..++.+.+=|++. .|... +=+-|...||..+.-...|--
T Consensus 7 q~~k~~~el~~v~~n~~lL~EML~~~--~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~ 64 (103)
T 1wrd_A 7 QIGKLRSELEMVSGNVRVMSEMLTEL--VPTQAEPADLELLQELNRTCRAMQQRVLELIP 64 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHS--CTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999995 67543 337899999999988776654
No 47
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=34.08 E-value=1e+02 Score=26.67 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=23.5
Q ss_pred HhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 65 LSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 65 l~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
-.++..|...+..++..+++++.|+.++++.+..++.
T Consensus 72 ~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~ 108 (341)
T 3fpp_A 72 KEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQT 108 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555566666666677777777777777765554
No 48
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.95 E-value=1.4e+02 Score=21.97 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q 024197 132 EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQL 169 (271)
Q Consensus 132 eQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~ 169 (271)
.+++..+.+-..+...+..++.++.++...+.+|...-
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~ 45 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA 45 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677788888899999999999999999999997763
No 49
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=33.54 E-value=2.5e+02 Score=24.83 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=47.7
Q ss_pred CCCch-hHHHHHHHH---HhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 216 TANSK-MGKALMAKC---KTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 216 TpdS~-~GKrLmaKC---R~LqeENEELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
+|-|. +|.-||.=| |.++.+.++.-+.....=|++||..+.+-.+++....+.|+
T Consensus 67 S~~skeLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~ 125 (222)
T 3ok8_A 67 SSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYE 125 (222)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55565 898888766 89999999999999999999999999999999988887764
No 50
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=33.23 E-value=2.3e+02 Score=24.27 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchh-hhHHHHHHHHHHHHHHhhh
Q 024197 191 RLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQ-LSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 191 rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~-LE~eLAlqK~~~eELrk~~ 269 (271)
.++..-.++..+....+..|++ +|+|+. |.++.+....|.++-...+.+.=... =+++++.--....+.|+.|
T Consensus 101 ~~~~L~~~~~~k~q~~~~~ls~-~~sp~~-----L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~y 174 (192)
T 2p22_C 101 NARILESKYVASWQDYHSEFSK-KYGDIA-----LKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQY 174 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TSSHHH-----HHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 3333334444444444444433 678988 88888888888888887776654331 0345554444444445444
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.04 E-value=1.6e+02 Score=22.48 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHH
Q 024197 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNA 263 (271)
Q Consensus 184 AVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~e 263 (271)
+|.-=++.||.+.+.+..+.++++..+... -.+|..+.+|...|-| |++.||.++-.......
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~------------e~~~~~~E~Ei~sL~k-----k~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAA------------EERSKQLEDDIVQLEK-----QLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 355556677777777777777777666442 3445555555555443 33455555544444443
Q ss_pred HH
Q 024197 264 EL 265 (271)
Q Consensus 264 EL 265 (271)
+.
T Consensus 69 ea 70 (101)
T 3u1c_A 69 KS 70 (101)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 52
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=32.65 E-value=3.8e+02 Score=26.62 Aligned_cols=192 Identities=20% Similarity=0.272 Sum_probs=108.5
Q ss_pred HHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHH
Q 024197 64 ILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAA 143 (271)
Q Consensus 64 il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~v 143 (271)
+-.|.+..++|.+.|..|...|+.=..+-++-+..|... .. .+|-..+ ...|+..-.++++.+.++..=...
T Consensus 443 ~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~-w~---r~~S~~~----~~~l~~~~~~~~~~l~~A~~sD~~ 514 (704)
T 2xs1_A 443 IKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKER-WQ---RTPSNEL----YKPLRAEGTNFRTVLDKAVQADGQ 514 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-CC---SCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CC---CCCcHHH----HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344555556667777777777777777777777666542 11 1111112 345677777888888888888888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHH
Q 024197 144 FIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGK 223 (271)
Q Consensus 144 lv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GK 223 (271)
+...+..-+.-|+-|..-..+|... -|++...-..-.++.|.. +..+-.+|...+.+-+....+|.+.+ +..+.+
T Consensus 515 v~~~~~~~~~~l~~L~~~~~~l~~~-~p~~~~~~~~~~~~~~~~-L~~~l~~l~~l~~~R~~~~~~lk~~~---ddI~~~ 589 (704)
T 2xs1_A 515 VKECYQSHRDTIVLLCKPEPELNAA-IPSANPAKTMQGSEVVNV-LKSLLSNLDEVKKEREGLENDLKSVN---FDMTSK 589 (704)
T ss_dssp HHHHHHTTHHHHHHHTSCHHHHHHT-SCCCCCCGGGSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhh-CccCCCcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc---cCccHH
Confidence 8888888777777777666667654 233211111112333332 25555667777777777778887743 333333
Q ss_pred HHHHHHH-hH-HHH---HHHHhhhhhcccchhhhHHHHHHHHHHHHHHhhh
Q 024197 224 ALMAKCK-TL-QEE---NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF 269 (271)
Q Consensus 224 rLmaKCR-~L-qeE---NEELGr~lsegria~LE~eLAlqK~~~eELrk~~ 269 (271)
-|...-+ .. .+| .+||++... .-+..++..+..|.....+++..+
T Consensus 590 ll~~~~~~~~~~~e~lf~~eL~k~~~-~~~~~i~~~~~~Q~~ll~~i~~~~ 639 (704)
T 2xs1_A 590 FLTALAQDGVINEEALSVTELDRVYG-GLTTKVQESLKKQEGLLKNIQVSH 639 (704)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332211 01 111 134443221 223456666677777777776554
No 53
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=32.24 E-value=4e+02 Score=26.75 Aligned_cols=107 Identities=12% Similarity=0.254 Sum_probs=60.2
Q ss_pred CCCCCCCChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC
Q 024197 105 IPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVT--FAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLD 182 (271)
Q Consensus 105 i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~r--LAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlD 182 (271)
+|-+++-+|-.|+ |..+=. =+.+++|+.|.+||+.-...+ +..-|-|..+.++.|...-.. -...|-|. +
T Consensus 274 FPe~Sg~ePlYIS--vs~ilt-~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~--~a~~~er~---~ 345 (551)
T 2b5u_A 274 FPKDSGHNAVYVS--VSDVLS-PDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANED--VARNQERQ---A 345 (551)
T ss_dssp CCGGGCCCCEEEE--EEECCC-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---H
T ss_pred CCCCCCCCceEEE--EeecCC-HHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---H
Confidence 4555555554332 112222 245777777888877766544 334444444444444433000 00112221 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCch
Q 024197 183 PAIHEEFRRLKNLVEEKDKKVKELEENIAAVS-FTANSK 220 (271)
Q Consensus 183 PAVNlef~rLr~eLee~~~kle~aq~ELsAwk-FTpdS~ 220 (271)
-+| -+|..+|.+|++..+.+..+..+...+- |.++.-
T Consensus 346 ~t~-~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~ 383 (551)
T 2b5u_A 346 KAV-QVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPM 383 (551)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTT
T ss_pred HHH-HHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChh
Confidence 333 3568899999999999999998887776 777653
No 54
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.22 E-value=2.2e+02 Score=23.39 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=33.0
Q ss_pred HhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhhHHHHHhhHhhHHHHHHHH
Q 024197 72 QNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQL 134 (271)
Q Consensus 72 ~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~LkeQl 134 (271)
+.|.++---++.+|-.|+--+..|.... ..--+.|..|+.|=++.+-|-
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQA--------------aTCNqTV~tL~~SL~~ekaq~ 69 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQA--------------ATANHTVMALMASLDAEKAQG 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 6788877888999999998888887211 122345566777666655554
No 55
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.43 E-value=1.1e+02 Score=20.82 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=15.3
Q ss_pred HHHHHhchhhhhhhHHHHHHHHHHHHHHHHhh
Q 024197 68 RESLQNCKDTLATCQLELEAAKSEIQKWHSSF 99 (271)
Q Consensus 68 r~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~f 99 (271)
+..++.-+..+-..-.+|..+..+|.+|++..
T Consensus 25 ~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 25 TDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555555433
No 56
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.39 E-value=1.6e+02 Score=23.63 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=5.4
Q ss_pred HHhHHHHHHHHhh
Q 024197 229 CKTLQEENDEIGR 241 (271)
Q Consensus 229 CR~LqeENEELGr 241 (271)
|..|..|+++|-+
T Consensus 70 ~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 70 CEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 57
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.29 E-value=65 Score=20.78 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 188 EFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 188 ef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
+|..|++++...+++...++-++.|.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766666666654
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.78 E-value=2e+02 Score=22.54 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=10.5
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 024197 145 IVTFAKREQEIAELKSAV 162 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi 162 (271)
...|+.+|.+++.++..+
T Consensus 81 q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 345666666666665544
No 59
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.51 E-value=70 Score=23.71 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=18.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCch
Q 024197 143 AFIVTFAKREQEIAELKSAVRDLKAQLKPPL 173 (271)
Q Consensus 143 vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~ 173 (271)
.|-..|-.+..||++++.++.-++++..|++
T Consensus 29 eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~~ 59 (67)
T 1zxa_A 29 ELEKRLSEKEEEIQELKRKLHKCQSVLPVPS 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3445677788888999888888877766554
No 60
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.05 E-value=99 Score=21.76 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=22.9
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 024197 223 KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (271)
Q Consensus 223 KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~ 262 (271)
..|-.++..|..+|.+|-..+ ..|..+++..+...
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei-----~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEI-----ANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 346677778888888877554 56666666655543
No 61
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=28.90 E-value=1.2e+02 Score=23.44 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhHHHHHHHHhhhhhcccchh---hhHHHHHHHHHHHHHHhhhc
Q 024197 221 MGKALMAKCKTLQEENDEIGRQNEEGETHQ---LSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 221 ~GKrLmaKCR~LqeENEELGr~lsegria~---LE~eLAlqK~~~eELrk~~e 270 (271)
-|+.||--+.-.--|..+|-+.+.+.-... ||.-|---.-..++|+.+|+
T Consensus 4 KpqTLmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~fdlAAdDLk~AY~ 56 (85)
T 3rq9_A 4 KPQTLMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYDLAADDLKNAYE 56 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceehhhHHHHHHHHHHHHhccccccCCCcchhHHHHhhhHHhhHHHHHHHH
Confidence 378899988888999999999998887766 88877777777788888876
No 62
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.86 E-value=1.9e+02 Score=28.18 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhh---hC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL---LD-PAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~L---lD-PAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
+-.|-.+.++-.++..++..|+..++.-+.+.-... -| .++-.+...|+.+|.+.+.++.+++++|...
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444432221111111 11 2344566788888888888888888777543
No 63
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=28.85 E-value=1.3e+02 Score=22.00 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=35.1
Q ss_pred hHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhcccCCCC
Q 024197 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPP 107 (271)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~e~~i~a 107 (271)
...|++|++|+++--..+-.++..+..-.-.+++-+..+ |..++|+
T Consensus 16 A~~I~~LK~Si~~TNeAV~el~~g~~~lavAv~~iQd~I-N~~i~Pa 61 (63)
T 2fyz_A 16 ARAIAAMKNSIQATNRAVFEVKEGTQRLAIAVQAIQDHI-NTIMNTQ 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccc
Confidence 468999999999999999988888887777777776433 4445554
No 64
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.80 E-value=1.2e+02 Score=28.59 Aligned_cols=68 Identities=13% Similarity=0.277 Sum_probs=39.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh---C-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL---D-PAIHEEFRRLKNLVEEKDKKVKELEENIAA 212 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll---D-PAVNlef~rLr~eLee~~~kle~aq~ELsA 212 (271)
+-.|-.+.++-.++..++..|+..++.-+.+.-...- | .++-.....|+.+|.+.+.++..++++|..
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666665554433322222111 1 234455677888888888888888877643
No 65
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=28.41 E-value=75 Score=26.34 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=45.6
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHH-hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHH
Q 024197 115 LVINYLQTLKSSEEMLKEQLEKAK-KKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLK 193 (271)
Q Consensus 115 l~~~~l~~Lk~sE~~LkeQl~e~k-rRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr 193 (271)
.+-+||..|+.+=...-+|+..+. .+|-- ....+.+.++.+++.+++....|-+..++.- +.|....+-.+|.
T Consensus 15 ~~w~Y~~~l~~~a~~~ve~l~~seL~qqL~-----~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~-l~~~~~~Lr~~l~ 88 (185)
T 3r2p_A 15 LATVYVDVLKDSGRDYVSQFEGSALGKQLN-----LKLLDNWDSVTSTFSKLREQLGPVTQEFWDN-LEKETEGLRQEMS 88 (185)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHSHHHHHTT-----CCCCTTCSCSSCHHHHHHHHHCSCCHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHHHh
Confidence 345688888888777777776655 33320 1112222333444555555555654444432 2222333444444
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024197 194 NLVEEKDKKVKELEENIA 211 (271)
Q Consensus 194 ~eLee~~~kle~aq~ELs 211 (271)
..+++.+.++.-.-.++.
T Consensus 89 kdlee~r~~l~P~~~e~~ 106 (185)
T 3r2p_A 89 KDLEEVKAKVQPYLDDFQ 106 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 555555555554444443
No 66
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=28.27 E-value=23 Score=22.98 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=9.1
Q ss_pred cCCCCCCCCCCCCCC
Q 024197 25 RSGSKRSFGDIEDDE 39 (271)
Q Consensus 25 ~~~~~~~~~~~~~~~ 39 (271)
++|.|| .+|+||||
T Consensus 3 Mf~~KR-r~dfd~dd 16 (32)
T 3uky_C 3 MFNRKR-RGDFDEDE 16 (32)
T ss_pred cccccc-cccCcccc
Confidence 466666 47888754
No 67
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.04 E-value=1.8e+02 Score=21.46 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCchhHHHHHHHHHhHHHHHHHH
Q 024197 187 EEFRRLKNLVEEKDKKVKELEENIAAVSFT-ANSKMGKALMAKCKTLQEENDEI 239 (271)
Q Consensus 187 lef~rLr~eLee~~~kle~aq~ELsAwkFT-pdS~~GKrLmaKCR~LqeENEEL 239 (271)
.++..|=..|...+.++..++..|+.-.|- .+..--..|+++...++.+.+++
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888876653 23323344555555555555443
No 68
>2oku_A Acyl-COA dehydrogenase family protein; the acyl-COA dehydrogenase, PSI-2, structural genomics, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.48.5.1
Probab=27.88 E-value=28 Score=28.85 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=20.1
Q ss_pred hhhcCCCchhHHHHh-hHH-HH-HhchhhhhhhH
Q 024197 52 VEETAPGVATGMILS-LRE-SL-QNCKDTLATCQ 82 (271)
Q Consensus 52 ~~~~~~~~~t~~il~-lr~-~l-~~~~~~~~~~~ 82 (271)
|+++-.||++||-|+ +|+ -+ ..+++.+..++
T Consensus 2 VVAAIr~ItnGtyl~~irE~y~~~~~~~el~~l~ 35 (131)
T 2oku_A 2 VVAAIRHITTGTYIARIREEYQQTEVKPELQPMK 35 (131)
T ss_dssp HHHHTHHHHHTHHHHHHHHTGGGCCCCGGGHHHH
T ss_pred eeeeecccccccHHHHHHHHHHhccccHHHHHHH
Confidence 456677899999998 888 44 23344443333
No 69
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=27.78 E-value=2.3e+02 Score=22.45 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=37.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-----CCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhh
Q 024197 182 DPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFT-----ANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQL 251 (271)
Q Consensus 182 DPAVNlef~rLr~eLee~~~kle~aq~ELsAwkFT-----pdS~~GKrLmaKCR~LqeENEELGr~lsegria~L 251 (271)
+|.--.-+.+|+..+......++..-.-... .+. -.+..||.+|..+|.+..+...--+.+..-|.+..
T Consensus 74 np~Q~~~l~~l~~~~~~~~~~~~~~i~l~~~-~~~~a~~~~~~~~Gk~~md~iR~~~~~~~~~E~~lL~~R~~~~ 147 (164)
T 3va9_A 74 NPEQIAHIDELRLLTDMRMAQLGRVVELGPE-RMREALDILEQARVDRLTERIETSLSVLTRAEQALLIQRLSKH 147 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655555666666665554444332221111 110 02347899999999998887666555555554443
No 70
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.43 E-value=1.1e+02 Score=22.27 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF 148 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rL 148 (271)
++||..|+.-...|+++..+.+++=..|..+|
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766666666655544444444443
No 71
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=27.34 E-value=83 Score=21.07 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 024197 233 QEENDEIGRQNEEGETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 233 qeENEELGr~lsegria~LE~eLAlqK~~~eELr 266 (271)
.+||+-|-+.+ .+-..+||-.|+.|++|+
T Consensus 6 L~ENekLhk~i-----e~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEI-----EQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHhhHHHH
Confidence 46888888776 455788899999999886
No 72
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=26.41 E-value=40 Score=32.61 Aligned_cols=36 Identities=8% Similarity=0.292 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 024197 184 AIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANS 219 (271)
Q Consensus 184 AVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS 219 (271)
+.--+..+||..+++.+.+++.++..|....|.|+.
T Consensus 251 ~~~~~~~~Lr~~i~~~~~~i~~LN~~L~~~~Fg~~~ 286 (483)
T 3euj_A 251 SAESVANILRKTIQREQNRILQLNQGLQNIAFGQVK 286 (483)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGGSSCCBTTEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 445577999999999999999999999999999876
No 73
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.92 E-value=2e+02 Score=21.21 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=28.4
Q ss_pred HHHhhHhhHHHHHHHHHHHHhHHHH----HHHHHhhHHHHHHHHHHHHH
Q 024197 119 YLQTLKSSEEMLKEQLEKAKKKEAA----FIVTFAKREQEIAELKSAVR 163 (271)
Q Consensus 119 ~l~~Lk~sE~~LkeQl~e~krRE~v----lv~rLAtKEQEiqEl~sqi~ 163 (271)
+|++|+.--++|..++.+...|=.. +...|+.+|.++++++..+.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766655332 45566777777776666543
No 74
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=25.70 E-value=1.2e+02 Score=22.75 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=24.7
Q ss_pred HHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcc
Q 024197 203 VKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG 246 (271)
Q Consensus 203 le~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lseg 246 (271)
+..+|..+..|.|.+.++ +.++. .|.+|-.||...+..+
T Consensus 3 l~elQ~~v~~~~~~~~~~--~~~~~---kL~eE~gEl~e~~~~~ 41 (100)
T 2q73_A 3 LSELQSHIKEFDYAPEQS--EHYFF---KLIEEVGELSESIRKG 41 (100)
T ss_dssp HHHHHHHHHHHCCCGGGH--HHHHH---HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCh--HHHHH---HHHHHHHHHHHHHHhh
Confidence 345666666666666643 33333 6888888888776544
No 75
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=25.44 E-value=1.7e+02 Score=20.21 Aligned_cols=44 Identities=30% Similarity=0.265 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~ 199 (271)
+.+...|.+.-..|++||..-.+. .-+||+|..+ ..||.++...
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k------~~i~~aV~~L-l~lK~~~~~~ 46 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPK------EDVDAAVKQL-LSLKAEYKEK 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCH------HHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCH------HHHHHHHHHH-HHHHHHHHHH
Confidence 345667778888899999764432 3789999775 7777766554
No 76
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=25.33 E-value=1.3e+02 Score=23.82 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhHHHHHHHHhhhhhcccchh---hhHHHHHHHHHHHHHHhhhc
Q 024197 221 MGKALMAKCKTLQEENDEIGRQNEEGETHQ---LSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 221 ~GKrLmaKCR~LqeENEELGr~lsegria~---LE~eLAlqK~~~eELrk~~e 270 (271)
-|+.||--+.-.--|..+|-+.+.+.-... ||.-|---.-..++|+.+|+
T Consensus 29 KpqTLmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~fdlAAdDLk~AY~ 81 (102)
T 3stq_A 29 KPQTLMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYDLAADDLKNAYE 81 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeehhHHHHHHHHHHHHhccccccCCCcchhHHHhhhhHhhhHHHHHHHH
Confidence 579999999999999999999999887766 88877777777888888876
No 77
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.24 E-value=1.2e+02 Score=22.49 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=18.5
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQLEKAKKKEAAFIVTF 148 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rL 148 (271)
.+||..|+..+..+.++....+++=..|..+|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777766666644444433444443
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.18 E-value=2.3e+02 Score=22.39 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=30.2
Q ss_pred CCchHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 170 KPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 170 ~ps~~qlR~~LlDPAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
+|+....=.....|+.... ...+.+++..+.+++.++.-+.+.
T Consensus 52 ~~~~TKVlH~~~NPa~~a~-~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 52 DQSRTKVLHMSLNPTSVAR-QRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp CTTTEEEEEESSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccCeeeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555455566677887764 556788888888888888777665
No 79
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.04 E-value=57 Score=22.86 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=18.4
Q ss_pred HHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHH
Q 024197 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKS 260 (271)
Q Consensus 224 rLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~ 260 (271)
.|-.++..|..+|.+|...+ ..|..+++.++.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v-----~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTA-----NMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 35666777777777776433 555555554443
No 80
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.97 E-value=2.1e+02 Score=27.04 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=40.0
Q ss_pred hhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 114 RLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 114 ~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
.-+..+|..|++..++|+++....+..=.-+..+|-.-+.+-..|.+.|.++|..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4567777777777777777766665555555566677777888899999999754
No 81
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=24.42 E-value=1.1e+02 Score=24.36 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 024197 63 MILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQN 101 (271)
Q Consensus 63 ~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq~ 101 (271)
++..||+||..-|..--.-+...+.-.+||..|+..+|+
T Consensus 47 TV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 47 TVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 82
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=24.38 E-value=2.6e+02 Score=21.97 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=39.0
Q ss_pred hhhHHHHHhhHhhHHHHHHHHHHHHh-HHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 114 RLVINYLQTLKSSEEMLKEQLEKAKK-KEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 114 ~l~~~~l~~Lk~sE~~LkeQl~e~kr-RE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
.++..++..+.+...-|.++..-... |.---+..|+...+++..-..++..-|..
T Consensus 11 ~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~ 66 (154)
T 3opc_A 11 SCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDA 66 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888 88777777777776666655555554443
No 83
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=24.35 E-value=3.1e+02 Score=22.88 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=26.9
Q ss_pred hHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhh
Q 024197 67 LRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQ 100 (271)
Q Consensus 67 lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq 100 (271)
++..|+..+..|+..+++|+.|+.+++|.+..++
T Consensus 58 ~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~ 91 (277)
T 2f1m_A 58 YQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG 91 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888889999999999988885554
No 84
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.11 E-value=2.5e+02 Score=21.62 Aligned_cols=77 Identities=9% Similarity=0.148 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 024197 187 EEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELK 266 (271)
Q Consensus 187 lef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eELr 266 (271)
..+.++...|..++..+++++.-|.+.. .|.+-+=+-|..=.+.+.+=-= ...|+++.|-.++..+|+.---+|
T Consensus 12 ~lv~~fe~rL~~Yr~~IeelE~~L~s~s-~~~~~Tpq~L~~~l~~~h~~Fi-----aLAa~l~~lH~~V~~~Ke~Yl~~r 85 (93)
T 3t98_B 12 VLVQQFEVQLQQYRQQIEELENHLATQA-NNSHITPQDLSMAMQKIYQTFV-----ALAAQLQSIHENVKVLKEQYLSYR 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH-HHTTSCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888877642 3333232335544444443332 444888999999999999888888
Q ss_pred hhh
Q 024197 267 SQF 269 (271)
Q Consensus 267 k~~ 269 (271)
+.+
T Consensus 86 r~~ 88 (93)
T 3t98_B 86 KMF 88 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 85
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.67 E-value=1.5e+02 Score=22.28 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=15.2
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 137 AKKKEAAFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 137 ~krRE~vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
...++..+..-+..+.++.+.|..+|+.|+
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333344445566666666666553
No 86
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.12 E-value=2.8e+02 Score=21.85 Aligned_cols=93 Identities=6% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHhhhC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhHHHHH
Q 024197 158 LKSAVRDLKAQLKPPLMQARRLLLD-PAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEEN 236 (271)
Q Consensus 158 l~sqi~dlK~~~~ps~~qlR~~LlD-PAVNlef~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeEN 236 (271)
+.+.+.+++......+..++.+=.. -..+.-|++|..+|+..+.....+...|.-. +..
T Consensus 15 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~--------------------e~~ 74 (131)
T 3tnu_A 15 FFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEET--------------------KGR 74 (131)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------------HHH
Q ss_pred HHHhhhhhcccchhhhHHHHHHHHHHHHHHhhhc
Q 024197 237 DEIGRQNEEGETHQLSVKLALQKSLNAELKSQFE 270 (271)
Q Consensus 237 EELGr~lsegria~LE~eLAlqK~~~eELrk~~e 270 (271)
.++-..-..++|..||.+|+-.|......-+.|+
T Consensus 75 ~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 75 YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 87
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.95 E-value=2.1e+02 Score=21.42 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhh
Q 024197 134 LEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLL 181 (271)
Q Consensus 134 l~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~Ll 181 (271)
=...+.||.-+..+...+++|...|+.+|..|+.. ...||++|+
T Consensus 31 R~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E----~~~Lr~ll~ 74 (78)
T 1gu4_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE----LSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 34667778888888888888888888888877554 234555554
No 88
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=22.92 E-value=80 Score=24.41 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.3
Q ss_pred hcccCCCCCCCCChhhhHHHHHhhHhhHHHHH
Q 024197 100 QNELFIPPGTSPEPRLVINYLQTLKSSEEMLK 131 (271)
Q Consensus 100 q~e~~i~a~~~~~~~l~~~~l~~Lk~sE~~Lk 131 (271)
.+|++++.|++++|-+..+|-++---.|-+.|
T Consensus 48 deesivgegetkepfl~vqys~~~p~ve~k~k 79 (90)
T 1zza_A 48 DEESIVGDGETKEPFLLVQYSAKGPCVERKAK 79 (90)
T ss_dssp CCTTTTTTTSSSTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccCCccCCceEEEEEecCCCchhhhhh
Confidence 34889999999999999988877666665543
No 89
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.98 E-value=46 Score=24.88 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=18.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHhh
Q 024197 245 EGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 245 egria~LE~eLAlqK~~~eELrk~ 268 (271)
+.||..||+.+|.|...+++|-..
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~ 36 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEA 36 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888887554
No 90
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=21.85 E-value=1.1e+02 Score=19.74 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVS 214 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwk 214 (271)
+..++++|...++++...+-+|.|++
T Consensus 4 laaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 4 LAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776666666666664
No 91
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.67 E-value=2.9e+02 Score=25.87 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=40.6
Q ss_pred hhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 114 RLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 114 ~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+-+.+.|..|++.-++|.+.+.+++.+=.-+-.++...|++-..|.++++++|..
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445666667766677777777766666666777888888888999999999854
No 92
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.60 E-value=3.1e+02 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024197 186 HEEFRRLKNLVEEKDKKVKELEENIA 211 (271)
Q Consensus 186 Nlef~rLr~eLee~~~kle~aq~ELs 211 (271)
..+|.+-..-|.+++.|++.+|+.|.
T Consensus 174 ~~L~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 174 TDLYKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677888889999999999987664
No 93
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=21.55 E-value=3.3e+02 Score=22.18 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=53.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhC--hhHHHHHHHHHHHHHH-----------------HHHHHHHHH
Q 024197 147 TFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLD--PAIHEEFRRLKNLVEE-----------------KDKKVKELE 207 (271)
Q Consensus 147 rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlD--PAVNlef~rLr~eLee-----------------~~~kle~aq 207 (271)
.|....+.+.+|...+..+.....- ...+|..|.. |.+.-.+..|...+.. ....+-.++
T Consensus 80 ~l~~i~~~~~~Y~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~d~~~~~~~~~~~~l~~~ll~~R 158 (258)
T 2yfa_A 80 LLGELGDTISAYKLSLNKMRQGYDA-TRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVR 158 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777776554221 2234444331 2222233444333222 111122222
Q ss_pred HhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhc
Q 024197 208 ENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEE 245 (271)
Q Consensus 208 ~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lse 245 (271)
..-..+..+|+......+.............|...+..
T Consensus 159 ~~~~~fl~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~ 196 (258)
T 2yfa_A 159 IDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPS 196 (258)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 23333444777788888888888888888888777654
No 94
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=21.33 E-value=96 Score=25.93 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=25.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhcC
Q 024197 142 AAFIVTFAKREQEIAELKSAVRDLKAQLK 170 (271)
Q Consensus 142 ~vlv~rLAtKEQEiqEl~sqi~dlK~~~~ 170 (271)
.+++.+|.++-|+++++..+|.+|+.+..
T Consensus 101 ~~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 101 TALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999987754
No 95
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.95 E-value=2.3e+02 Score=20.00 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=10.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 024197 143 AFIVTFAKREQEIAELKSAVRDL 165 (271)
Q Consensus 143 vlv~rLAtKEQEiqEl~sqi~dl 165 (271)
-+......++++..+|...|..|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 96
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=20.59 E-value=1.9e+02 Score=21.15 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=31.9
Q ss_pred hHHHHhhHHHHHhchhhhhhhHHHHHHHHHHHHHHHHhhh
Q 024197 61 TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQ 100 (271)
Q Consensus 61 t~~il~lr~~l~~~~~~~~~~~~~l~~a~~ei~kW~~~fq 100 (271)
.+.|+.|++|++.--..+-.+...+..-...+++-+..+.
T Consensus 13 a~~I~~LK~Si~~TNeAV~el~~g~~~lavAv~~lQd~IN 52 (64)
T 1svf_A 13 AAAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHIN 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998888888777777777664333
No 97
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.50 E-value=1.1e+02 Score=23.59 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhh
Q 024197 233 QEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQ 268 (271)
Q Consensus 233 qeENEELGr~lsegria~LE~eLAlqK~~~eELrk~ 268 (271)
.+||+.|-..+ -.|+-+++..|+.+++||.-
T Consensus 45 L~EN~~Lh~~i-----e~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 45 LKENEKLHKEI-----EQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 46788887554 56888888888888888753
No 98
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=20.42 E-value=1.8e+02 Score=22.27 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=24.3
Q ss_pred HHHHHhhhhcccCCCchhHHHHHHHHHhHHHHHHHHhhhhhcc
Q 024197 204 KELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEG 246 (271)
Q Consensus 204 e~aq~ELsAwkFTpdS~~GKrLmaKCR~LqeENEELGr~lseg 246 (271)
.++|..+..|-|+|+.. .-+ ...|.+|-.||...+..+
T Consensus 24 ~elq~~i~~~~~~~~~~--~~~---~~kL~eE~gEl~e~i~~~ 61 (114)
T 2q5z_A 24 SELQSHIKEFDYAPEQS--EHY---FFKLIEEVGELSESIRKG 61 (114)
T ss_dssp HHHHHHHHHHSCCGGGH--HHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCch--HHH---HHHHHHHHHHHHHHHHhh
Confidence 34555666677777733 223 345888988888777544
No 99
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=20.38 E-value=64 Score=22.71 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH
Q 024197 139 KKEAAFIVTFAKREQEIAELKS 160 (271)
Q Consensus 139 rRE~vlv~rLAtKEQEiqEl~s 160 (271)
=||.+|--||+..+.+++++++
T Consensus 25 LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 25 LKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3688899999999999998864
No 100
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.07 E-value=2.7e+02 Score=22.86 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197 229 CKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (271)
Q Consensus 229 CR~LqeENEELGr~lsegria~LE~eLAlqK~~~eEL 265 (271)
...|+.|+..|-.. ++..+.++.-+++.+.++
T Consensus 73 vqeLqgEI~~Lnq~-----Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 73 VEELEGEITTLNHK-----LQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHhhchhh
Confidence 44455555555432 244455555555544443
No 101
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.06 E-value=2.7e+02 Score=20.65 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=31.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHHH
Q 024197 148 FAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKD 200 (271)
Q Consensus 148 LAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~~ 200 (271)
++.++..|.+.-..|+.||..-.+ ..-+||+|..+ ..||.++....
T Consensus 15 ~~~l~~~V~~QG~~VR~LKa~kA~------k~~i~~aV~~L-l~LKa~l~~~t 60 (79)
T 2djv_A 15 IQALMDEVTKQGNIVRELKAQKAD------KNEVAAEVAKL-LDLKKQLAVAE 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCc------HhHhhHHHHHH-HHHHHHHHHhc
Confidence 455667777778888999876444 23678999764 77777766553
No 102
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.03 E-value=1.6e+02 Score=22.06 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=27.9
Q ss_pred HHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH
Q 024197 224 ALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAEL 265 (271)
Q Consensus 224 rLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~eEL 265 (271)
.+.+|.+-++.+|.+|- ++|..|+..|.-.+..-+-+
T Consensus 4 ~~~~kLq~~E~~N~~Le-----~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLE-----GQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999987 66788888887766544433
Done!