Query 024197
Match_columns 271
No_of_seqs 59 out of 61
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 04:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024197.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024197hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fyja_ a.16.1.3 (A:) Multifun 51.5 21 0.0015 24.1 6.1 44 149-199 3-46 (57)
2 d1seta1 a.2.7.1 (A:1-110) Sery 44.6 28 0.0021 24.7 6.4 69 145-213 27-97 (110)
3 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 35.0 54 0.0039 22.7 6.2 52 92-149 8-64 (67)
4 d1wrda1 a.7.8.1 (A:215-307) Ta 32.1 76 0.0055 22.1 9.5 73 189-269 3-81 (93)
5 d1r6ta1 a.16.1.3 (A:7-60) N-te 29.9 71 0.0052 21.1 6.1 44 148-198 3-46 (54)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 27.1 96 0.007 21.7 9.4 36 133-168 9-44 (107)
7 d2fupa1 a.47.5.1 (A:1-130) Hyp 23.8 1.1E+02 0.0083 21.4 11.2 56 111-166 6-61 (130)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 22.4 1.2E+02 0.0091 21.4 9.2 42 68-109 14-58 (133)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 21.3 83 0.0061 21.3 5.3 18 117-134 51-68 (88)
10 d1gqea_ e.38.1.1 (A:) Polypept 20.7 2.4E+02 0.017 24.0 10.7 36 197-232 25-60 (362)
11 d1xb2b1 a.5.2.2 (B:56-111) Elo 20.1 24 0.0018 23.6 2.0 36 59-94 3-42 (56)
No 1
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.50 E-value=21 Score=24.13 Aligned_cols=44 Identities=30% Similarity=0.265 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHHH
Q 024197 149 AKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEK 199 (271)
Q Consensus 149 AtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee~ 199 (271)
+.++++|.+-=..|+.||..-.|.. -+||+|+.+ ..||.++.+.
T Consensus 3 ~~L~~~V~~QGd~VR~LK~~ka~k~------~i~~aV~~L-L~LK~~yk~~ 46 (57)
T d1fyja_ 3 LVLYNRVAVQGDVVRELKAKKAPKE------DVDAAVKQL-LSLKAEYKEK 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHH------HHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHH-HHHHHHHHHh
Confidence 4567788888889999999865532 589999986 5677666543
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=44.60 E-value=28 Score=24.66 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhh--hChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024197 145 IVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL--LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAV 213 (271)
Q Consensus 145 v~rLAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~L--lDPAVNlef~rLr~eLee~~~kle~aq~ELsAw 213 (271)
+-.|-.+.++..++..++..|++.++.-+-+....- -.+++-.....|+.+|...+.++..++.++...
T Consensus 27 ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666555433222221110 012334455667777888888887777777543
No 3
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.03 E-value=54 Score=22.72 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=32.6
Q ss_pred HHHHHHhhhcccCCCCCCCCChhh-----hHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHh
Q 024197 92 IQKWHSSFQNELFIPPGTSPEPRL-----VINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFA 149 (271)
Q Consensus 92 i~kW~~~fq~e~~i~a~~~~~~~l-----~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLA 149 (271)
+..|+..| |-.++|.+.+ ...+|.+-|.+=.+|++.+++-+=|=-.|...||
T Consensus 8 ~eaW~aqF------P~sepP~m~l~sV~diE~eLerCk~~irrLeqel~~ErF~~iYLQt~LA 64 (67)
T d1k1fa_ 8 AEAWKAQF------PDSEPPRMELRSVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLA 64 (67)
T ss_dssp HHHHHHHC------TTSCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC------CCCCCCcchhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56799665 4445555544 4566777777777777777666655555555554
No 4
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.12 E-value=76 Score=22.10 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhH------HHHHHHHHhHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 024197 189 FRRLKNLVEEKDKKVKELEENIAAVSFTANSKMG------KALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLN 262 (271)
Q Consensus 189 f~rLr~eLee~~~kle~aq~ELsAwkFTpdS~~G------KrLmaKCR~LqeENEELGr~lsegria~LE~eLAlqK~~~ 262 (271)
+.+++++|+..+..++.+.+=|...+ |....+ +-|...|+.++.-.-.|--.+.. |.-++-.=..|
T Consensus 3 ~~kl~~eLe~v~~n~~lL~eML~~~~--p~~~~~~d~eli~eL~~~C~~~q~~i~~li~~~~d------ee~l~~lL~~N 74 (93)
T d1wrda1 3 IGKLRSELEMVSGNVRVMSEMLTELV--PTQAEPADLELLQELNRTCRAMQQRVLELIPQIAN------EQLTEELLIVN 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCC------HHHHHHHHHHH
Confidence 47899999999999999999999874 554333 67999999999988777654421 33345555566
Q ss_pred HHHHhhh
Q 024197 263 AELKSQF 269 (271)
Q Consensus 263 eELrk~~ 269 (271)
++|-+.+
T Consensus 75 D~L~~vl 81 (93)
T d1wrda1 75 DNLNNVF 81 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 5
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.88 E-value=71 Score=21.09 Aligned_cols=44 Identities=25% Similarity=0.114 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhChhHHHHHHHHHHHHHH
Q 024197 148 FAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEE 198 (271)
Q Consensus 148 LAtKEQEiqEl~sqi~dlK~~~~ps~~qlR~~LlDPAVNlef~rLr~eLee 198 (271)
+..+.++|..-=..|++||..-.| . .-+||+|+.+ ..||.+..+
T Consensus 3 ~~eL~~~I~~QGd~VR~LKa~ka~-K-----~~id~aV~~L-L~LK~~yk~ 46 (54)
T d1r6ta1 3 LLELFNSIATQGELVRSLKAGNAS-K-----DEIDSAVKML-VSLKMSYKA 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-H-----HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCC-H-----HHHHHHHHHH-HHHHHHHHH
Confidence 345667777777889999988554 2 3689999986 566666554
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.09 E-value=96 Score=21.69 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=28.9
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 024197 133 QLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ 168 (271)
Q Consensus 133 Ql~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK~~ 168 (271)
+++..+..=..+...++.++.++.|....+.+|...
T Consensus 9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l 44 (107)
T d1fxka_ 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555555678899999999999999999999776
No 7
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.85 E-value=1.1e+02 Score=21.44 Aligned_cols=56 Identities=7% Similarity=0.107 Sum_probs=38.7
Q ss_pred CChhhhHHHHHhhHhhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024197 111 PEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLK 166 (271)
Q Consensus 111 ~~~~l~~~~l~~Lk~sE~~LkeQl~e~krRE~vlv~rLAtKEQEiqEl~sqi~dlK 166 (271)
.-..++.+++..+.+.-.=|.++..-..+|...-+..++..++.+-.-...+..-|
T Consensus 6 ~L~~~L~~e~~~~~~L~~LL~~e~~aL~~~d~~~Le~l~~~k~~ll~~l~~~~~~R 61 (130)
T d2fupa1 6 TLLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRAR 61 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888877777777777777776666655555444443
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.40 E-value=1.2e+02 Score=21.36 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=19.1
Q ss_pred HHHHHhchhhhhh---hHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 024197 68 RESLQNCKDTLAT---CQLELEAAKSEIQKWHSSFQNELFIPPGT 109 (271)
Q Consensus 68 r~~l~~~~~~~~~---~~~~l~~a~~ei~kW~~~fq~e~~i~a~~ 109 (271)
++-|+++...+.+ ..+++..+...|..-.+.-..+-+||-|.
T Consensus 14 ~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~ 58 (133)
T d1fxkc_ 14 QSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGA 58 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCC
Confidence 3334444433333 33455555555555544333354555333
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.31 E-value=83 Score=21.27 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=8.7
Q ss_pred HHHHHhhHhhHHHHHHHH
Q 024197 117 INYLQTLKSSEEMLKEQL 134 (271)
Q Consensus 117 ~~~l~~Lk~sE~~LkeQl 134 (271)
++||..|+.-...|..+.
T Consensus 51 ~~yI~~L~~~~~~l~~~~ 68 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555444444433
No 10
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=20.72 E-value=2.4e+02 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHhH
Q 024197 197 EEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTL 232 (271)
Q Consensus 197 ee~~~kle~aq~ELsAwkFTpdS~~GKrLmaKCR~L 232 (271)
+..+.+++++..+|+.=.|--|+...+.|+.+...|
T Consensus 25 d~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L 60 (362)
T d1gqea_ 25 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSL 60 (362)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHH
Confidence 445555666666666666655655555555444444
No 11
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=20.06 E-value=24 Score=23.63 Aligned_cols=36 Identities=36% Similarity=0.629 Sum_probs=28.6
Q ss_pred chhHHHHhhHH----HHHhchhhhhhhHHHHHHHHHHHHH
Q 024197 59 VATGMILSLRE----SLQNCKDTLATCQLELEAAKSEIQK 94 (271)
Q Consensus 59 ~~t~~il~lr~----~l~~~~~~~~~~~~~l~~a~~ei~k 94 (271)
+..-+|-.||+ ++-+||..|..+...++.|..-+.+
T Consensus 3 ~s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~Lrk 42 (56)
T d1xb2b1 3 SSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK 42 (56)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45568888997 4789999999999989888766654
Done!