BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024198
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55049|YMEL_STRLN Uncharacterized 17.2 kDa protein in melC2-rnhH intergenic region
OS=Streptomyces lincolnensis PE=4 SV=1
Length = 150
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 91 EIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPD-LSKWSLKYKAFGRDIEFSWLAR 149
E+ VPV AYN ++ E+ P+ F+S V+ +E + D L+ W ++ + A
Sbjct: 9 EVGVPVHTAYNQWTQFETFPQ---FMSGVERIEQRTDTLTHWVTSVNGVHKEFD----AE 61
Query: 150 NMQPIPNQKIHWRSLEGLPNRGAVRFFPK 178
+ IP++++ W ++ G + V F +
Sbjct: 62 ITEQIPDERVAWTTVGGEAEQAGVVTFHR 90
>sp|Q7VFF6|MQO_HELHP Probable malate:quinone oxidoreductase OS=Helicobacter hepaticus
(strain ATCC 51449 / 3B1) GN=mqo PE=3 SV=1
Length = 494
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 48 LRRQLLFGV-----PIPHGSFKRSSSIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNA 102
+R+Q+L G P+PH SF + P ++ + T+K D P+
Sbjct: 96 IRKQILKGAHTFLNPVPHLSFVVDDIV---------PYLKKRYETLK---DSPLFKNMIY 143
Query: 103 YSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQK 158
DRE I W P + LE + + K ++ Y A G D++F +AR +QK
Sbjct: 144 TEDREQIKEWAPLL-----LEGRGETQKMAVTYMAGGSDVDFGEIARQFGEKLSQK 194
>sp|P54761|EPHB4_MOUSE Ephrin type-B receptor 4 OS=Mus musculus GN=Ephb4 PE=1 SV=2
Length = 987
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 42/176 (23%)
Query: 130 KWSLKYKAFGRDIEFSWLARNMQPI----------PNQKIHWRSLEGLPNRGAVRFF--- 176
KW +A G+ E S L + P + HW +P RGAV +
Sbjct: 31 KWVTYPQAEGQWEELSGLDEEQHSVRTYEVCDMKRPGGQAHWLRTGWVPRRGAVHVYATI 90
Query: 177 ----------PKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK-- 224
P+ SC TV Y + PY+ VD +A +HL +
Sbjct: 91 RFTMMECLSLPRASRSCKETFTVFYYESEADTATAHTPAWMENPYIKVDTVAAEHLTRKR 150
Query: 225 ----AISRLNFRWSGLGNLIK-------------LQVIDFHCGYHFINWITIFLTF 263
A ++N + LG L K + ++ H Y +W+ LT+
Sbjct: 151 PGAEATGKVNIKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFYKKCSWLITNLTY 206
>sp|Q6EVZ5|NU1C_NYMAL NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nymphaea
alba GN=ndhA PE=3 SV=1
Length = 361
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAI 226
LP+RG +R F GPS +V + +SY V +P HL L WIA + +I
Sbjct: 87 LPSRGDIRLFSVGPSVAVVSILLSYSV----IPFGYHLVLTDLSIGVFLWIA----ISSI 138
Query: 227 SRLNFRWSGLGN 238
+ + SG G+
Sbjct: 139 APIGLLMSGYGS 150
>sp|A1XG10|NU1C_NUPAD NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nuphar
advena GN=ndhA PE=3 SV=2
Length = 361
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAI 226
LP+RG +R F GPS +V + +SY V +P HL L WIA + +I
Sbjct: 87 LPSRGDIRLFSVGPSIAVVSILLSYSV----IPFGHHLVLTDLSIGVSLWIA----ISSI 138
Query: 227 SRLNFRWSGLGN 238
+ + SG G+
Sbjct: 139 APIGLLMSGYGS 150
>sp|Q09WW3|NU1C_MORIN NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Morus
indica GN=ndhA PE=3 SV=1
Length = 363
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 168 PNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQH-----LNLFLKPYLDVDWIALQHL 222
P+RG R F GPS ++ + VSY V VP H LN+ + ++ + IA L
Sbjct: 90 PSRGETRLFSIGPSIAVISILVSYSV----VPFGSHLVLVDLNIGVFLWIAISSIAPIGL 145
Query: 223 LKAISRLNFRWSGLGNL 239
L + N ++S LG L
Sbjct: 146 LMSGYGSNNKYSFLGGL 162
>sp|Q06GL0|NU1C_PIPCE NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Piper
cenocladum GN=ndhA PE=3 SV=1
Length = 363
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 14/75 (18%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHL---NLFLKPYLDVDWIALQHLL 223
LP+RG +R F GPS ++ + +SY V +P HL +L + +L WIA +
Sbjct: 89 LPSRGDIRLFSIGPSIAVISIILSYSV----IPFSYHLVLADLGIGVFL---WIA----V 137
Query: 224 KAISRLNFRWSGLGN 238
+I+ + SG G+
Sbjct: 138 SSIAPIGLLMSGYGS 152
>sp|Q9MTH7|NU1C_OENEH NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
OS=Oenothera elata subsp. hookeri GN=ndhA PE=3 SV=2
Length = 363
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQH-----LNLFLKPYLDVDWIALQH 221
LP+RG R F GPS ++ + +SY V +P H LN+ + ++ V IA
Sbjct: 89 LPSRGDTRLFSIGPSIAVISILLSYSV----IPFSSHLVLSDLNIGVFLWIAVSSIAPIG 144
Query: 222 LLKAISRLNFRWSGLGNL 239
LL + N ++S LG L
Sbjct: 145 LLMSGYGSNNKYSFLGGL 162
>sp|Q332S2|NU1C_LACSA NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca
sativa GN=ndhA PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNL 206
LP+RG R F GPS ++ + +SY L++P HL L
Sbjct: 89 LPSRGDTRLFSIGPSIAVISILLSY----LVIPFSYHLVL 124
>sp|Q2QD36|NU1C_CUCSA NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis
sativus GN=ndhA PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQ-----H 221
LP+RG R F GPS ++ + +SY V +P L L P WIA+
Sbjct: 89 LPSRGDTRLFSIGPSIAVISILLSYSV----IPFGYRLVLADLPIGVFLWIAISSVAPIG 144
Query: 222 LLKAISRLNFRWSGLGNL 239
LL + N ++S LG L
Sbjct: 145 LLMSGYGSNNKYSFLGGL 162
>sp|Q68RV1|NU1C_PANGI NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Panax
ginseng GN=ndhA PE=3 SV=1
Length = 363
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQ-----H 221
LP+RG R F GPS + + +SY L++P HL L WIA+
Sbjct: 89 LPSRGDTRLFSIGPSVAVTSILLSY----LVIPFGYHLVLADLSIGVFLWIAISSIAPVG 144
Query: 222 LLKAISRLNFRWSGLGNL 239
LL + N ++S LG L
Sbjct: 145 LLMSGYGSNNKYSFLGGL 162
>sp|P96315|CR1AF_BACTU Pesticidal crystal protein cry1Af (Fragment) OS=Bacillus
thuringiensis GN=cry1Af PE=2 SV=1
Length = 911
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 34 SASTSIGRNLKPPSLRRQLLFGVPIPHGSFKRSSSIFTPSRHFFSPVMEWQDCTVKSEID 93
SA+ S GRNL+ SLR + F P +F SS+FT S H F+ E ++
Sbjct: 549 SATMSSGRNLQSGSLR-TVGFTTPF---NFSNGSSVFTLSAHVFNSGNEVYIDRIEF--- 601
Query: 94 VPVSVAYNAYSDRESIPRWMP--FISSVKI 121
VP V + A D E + + F SS +I
Sbjct: 602 VPAEVTFEAEYDLERAQKAVNELFTSSNQI 631
>sp|Q0ZIW3|NU1C_VITVI NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis
vinifera GN=ndhA PE=3 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQH-----LNLFLKPYLDVDWIALQH 221
LP+RG R F GPS ++ + +SY L++P + LN+ + ++ + IA
Sbjct: 89 LPSRGDTRLFSIGPSIAVISILLSY----LIIPFGSNLVLSDLNIGVFLWIAISSIAPIG 144
Query: 222 LLKAISRLNFRWSGLGNL 239
LL + N ++S LG L
Sbjct: 145 LLMSGYGSNNKYSFLGGL 162
>sp|Q49KU3|NU1C_EUCGG NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
OS=Eucalyptus globulus subsp. globulus GN=ndhA PE=3 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 168 PNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNL 206
P+RG R F GPS ++ + +SY V +P HL L
Sbjct: 90 PSRGDTRLFSIGPSIAVISILLSYSV----IPFSYHLVL 124
>sp|Q09FQ5|NU1C_NANDO NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nandina
domestica GN=ndhA PE=3 SV=1
Length = 366
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAI 226
LP+RG + F GPS ++ + +SY V +P HL L WIA + +I
Sbjct: 90 LPSRGDILLFSLGPSIAVISILLSYSV----IPFGYHLVLADLSIGVFLWIA----ISSI 141
Query: 227 SRLNFRWSGLGN 238
+ + SG G+
Sbjct: 142 APIGLLMSGYGS 153
>sp|A6MN00|NU1C_ILLOL NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Illicium
oligandrum GN=ndhA PE=3 SV=1
Length = 364
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEV 193
LP+RG +R F GPS ++ + +SY V
Sbjct: 89 LPSRGDIRLFSVGPSIAVISILLSYSV 115
>sp|Q7YJS9|NU1C_CALFG NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
OS=Calycanthus floridus var. glaucus GN=ndhA PE=3 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHL---NLFLKPYLDVDWIALQHLL 223
LP+RG +R F GPS ++ + +SY V +P L +L + +L WIA +
Sbjct: 89 LPSRGDIRLFSIGPSIAVISILLSYSV----IPFGYRLVLADLGIGVFL---WIA----I 137
Query: 224 KAISRLNFRWSGLGN 238
+I+ + SG G+
Sbjct: 138 SSIAPIGLLMSGYGS 152
>sp|A1XGT6|NU1C_RANMC NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
OS=Ranunculus macranthus GN=ndhA PE=3 SV=1
Length = 363
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAI 226
LP+RG + F GPS ++ + +SY L++P HL L WIA + +I
Sbjct: 89 LPSRGDIYLFSIGPSIAVIAILLSY----LVIPFGYHLVLADLSIGVFLWIA----ISSI 140
Query: 227 SRLNFRWSGLGN 238
+ + SG G+
Sbjct: 141 APIGLLMSGYGS 152
>sp|Q06GU1|NU1C_DRIGR NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Drimys
granadensis GN=ndhA PE=3 SV=1
Length = 363
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAI 226
LP+RG +R F GPS ++ + +SY V +P L L WIA + +I
Sbjct: 89 LPSRGDIRLFSIGPSIAVISILLSYSV----IPFGYRLVLADLSIGVFLWIA----ISSI 140
Query: 227 SRLNFRWSGLGN 238
+ + SG G+
Sbjct: 141 APIGLLMSGYGS 152
>sp|P92432|NU1C_HORVU NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Hordeum
vulgare GN=ndhA PE=2 SV=4
Length = 362
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVD---WIALQH-- 221
LP+RG + F GPS ++ + +S+ L++PL H F+ L + WIA+
Sbjct: 88 LPSRGDISLFSIGPSIAVISVLLSF----LVIPLGYH---FVLADLSIGVFLWIAISSIA 140
Query: 222 ---LLKAISRLNFRWSGLGNL 239
LL A N ++S LG L
Sbjct: 141 PIGLLMAGYSSNNKYSFLGGL 161
>sp|Q95H43|NU1C_WHEAT NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Triticum
aestivum GN=ndhA PE=2 SV=2
Length = 362
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVD---WIALQH-- 221
LP+RG + F GPS ++ + +S+ L++PL H F+ L + WIA+
Sbjct: 88 LPSRGDISLFSIGPSIAVISVLLSF----LVIPLGYH---FVLADLSIGVFLWIAISSIA 140
Query: 222 ---LLKAISRLNFRWSGLGNL 239
LL A N ++S LG L
Sbjct: 141 PIGLLMAGYSSNNKYSFLGGL 161
>sp|Q0G9G4|NU1C_LIRTU NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
OS=Liriodendron tulipifera GN=ndhA PE=3 SV=1
Length = 363
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAI 226
LP+RG +R F GPS ++ + +SY V +P L L WIA + +I
Sbjct: 89 LPSRGDIRLFSIGPSIAVISILLSYSV----IPFGYRLVLADLSIGVFLWIA----ISSI 140
Query: 227 SRLNFRWSGLGN 238
+ + SG G+
Sbjct: 141 APIGLLMSGYGS 152
>sp|P54760|EPHB4_HUMAN Ephrin type-B receptor 4 OS=Homo sapiens GN=EPHB4 PE=1 SV=2
Length = 987
Score = 31.2 bits (69), Expect = 8.0, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 30/116 (25%)
Query: 150 NMQPIPNQKIHWRSLEGLPNRGAVRFF-------------PKGPSSCIVELTVSY----- 191
++Q P Q HW +P RGAV + P+ SC TV Y
Sbjct: 62 DVQRAPGQA-HWLRTGWVPRRGAVHVYATLRFTMLECLSLPRAGRSCKETFTVFYYESDA 120
Query: 192 EVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK------AISRLNFRWSGLGNLIK 241
+ L P PY+ VD +A +HL + A ++N + LG L K
Sbjct: 121 DTATALTPAWME-----NPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSK 171
>sp|Q14FA3|NU1C_POPAL NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus
alba GN=ndhA PE=3 SV=1
Length = 365
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 168 PNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQH-----LNLFLKPYLDVDWIALQHL 222
P+RG R F GPS ++ +SY V +P H LN+ + ++ + IA L
Sbjct: 90 PSRGDTRLFSIGPSIAVISTLLSYSV----IPFGYHFVLADLNIGVFLWIAISSIAPIGL 145
Query: 223 LKAISRLNFRWSGLGNL 239
L + N ++S LG L
Sbjct: 146 LMSGYGSNNKYSFLGGL 162
>sp|A4GYX1|NU1C_POPTR NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus
trichocarpa GN=ndhA PE=3 SV=1
Length = 365
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 168 PNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQH-----LNLFLKPYLDVDWIALQHL 222
P+RG R F GPS ++ +SY V +P H LN+ + ++ + IA L
Sbjct: 90 PSRGDTRLFSIGPSIAVISTLLSYSV----IPFGYHFVLADLNIGVFLWIAISSIAPIGL 145
Query: 223 LKAISRLNFRWSGLGNL 239
L + N ++S LG L
Sbjct: 146 LMSGYGSNNKYSFLGGL 162
>sp|Q9BBN9|NU1C_LOTJA NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lotus
japonicus GN=ndhA PE=3 SV=1
Length = 363
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQH-----LNLFLKPYLDVDWIALQH 221
+P+RG +R F GPS ++ + ++Y L++P + LN+ + ++ + IA
Sbjct: 89 IPSRGDIRLFSIGPSISVISILITY----LVIPFSYNFVLSDLNIGVFLWIAISSIAPIG 144
Query: 222 LLKAISRLNFRWSGLGNL 239
LL + N ++S LG L
Sbjct: 145 LLMSGYGSNNKYSFLGGL 162
>sp|Q09FZ1|NU1C_PLAOC NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Platanus
occidentalis GN=ndhA PE=3 SV=1
Length = 363
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 167 LPNRGAVRFFPKGPSSCIVELTVSYEV 193
LP+RG R F GPS I+ + +SY V
Sbjct: 89 LPSRGDTRLFSIGPSIAIISILLSYSV 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,094,809
Number of Sequences: 539616
Number of extensions: 4337635
Number of successful extensions: 10550
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 10540
Number of HSP's gapped (non-prelim): 34
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)