Query 024198
Match_columns 271
No_of_seqs 150 out of 1099
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5637 Predicted integral mem 100.0 5.8E-30 1.3E-34 221.3 14.5 159 65-229 43-214 (217)
2 cd07813 COQ10p_like Coenzyme Q 99.9 4.1E-21 8.8E-26 156.7 16.9 134 87-225 2-137 (138)
3 cd07817 SRPBCC_8 Ligand-bindin 99.9 8E-21 1.7E-25 152.9 16.9 135 86-225 2-139 (139)
4 PRK10724 hypothetical protein; 99.9 3.1E-20 6.7E-25 158.7 17.3 140 85-229 16-157 (158)
5 COG2867 Oligoketide cyclase/li 99.8 1.2E-20 2.5E-25 158.8 12.6 140 86-229 4-145 (146)
6 cd08865 SRPBCC_10 Ligand-bindi 99.8 1E-18 2.2E-23 139.3 17.7 136 87-225 2-140 (140)
7 cd08860 TcmN_ARO-CYC_like N-te 99.8 1.8E-18 4E-23 145.5 16.9 137 87-226 4-145 (146)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.8 3.6E-18 7.7E-23 139.0 16.7 135 87-225 2-142 (142)
9 cd08862 SRPBCC_Smu440-like Lig 99.8 3.9E-18 8.4E-23 137.1 16.5 135 85-225 2-138 (138)
10 cd08866 SRPBCC_11 Ligand-bindi 99.8 1.3E-17 2.8E-22 136.0 18.5 137 87-225 2-144 (144)
11 cd07820 SRPBCC_3 Ligand-bindin 99.8 2E-17 4.3E-22 135.6 16.5 106 87-197 2-115 (137)
12 cd07818 SRPBCC_1 Ligand-bindin 99.8 2.9E-17 6.3E-22 135.0 16.2 135 85-225 3-150 (150)
13 PF10604 Polyketide_cyc2: Poly 99.8 1.1E-16 2.3E-21 128.1 18.4 133 85-224 3-139 (139)
14 cd07821 PYR_PYL_RCAR_like Pyra 99.7 1.7E-16 3.6E-21 126.8 17.0 132 86-224 3-140 (140)
15 cd07819 SRPBCC_2 Ligand-bindin 99.7 1.7E-16 3.7E-21 127.5 17.1 134 84-223 2-140 (140)
16 cd05018 CoxG Carbon monoxide d 99.7 1.5E-16 3.3E-21 128.4 16.3 137 85-224 2-144 (144)
17 cd07824 SRPBCC_6 Ligand-bindin 99.7 2.9E-16 6.4E-21 130.0 16.6 133 87-222 4-145 (146)
18 cd07823 SRPBCC_5 Ligand-bindin 99.7 3.7E-16 8E-21 129.4 15.8 135 88-225 3-146 (146)
19 PF03364 Polyketide_cyc: Polyk 99.7 4.9E-16 1.1E-20 124.8 13.6 124 92-220 1-130 (130)
20 cd07822 SRPBCC_4 Ligand-bindin 99.7 2.5E-15 5.4E-20 120.1 17.1 133 87-224 3-141 (141)
21 cd07825 SRPBCC_7 Ligand-bindin 99.6 8.3E-15 1.8E-19 119.4 14.5 135 87-224 3-144 (144)
22 cd07812 SRPBCC START/RHO_alpha 99.6 1.2E-13 2.5E-18 106.6 16.3 133 87-222 2-140 (141)
23 cd07814 SRPBCC_CalC_Aha1-like 99.6 6.2E-14 1.3E-18 112.5 15.2 132 87-225 3-139 (139)
24 PF06240 COXG: Carbon monoxide 99.4 2.7E-11 5.8E-16 100.7 16.3 129 89-223 2-135 (140)
25 COG3427 Carbon monoxide dehydr 99.3 2.4E-10 5.2E-15 96.9 15.5 135 85-223 2-143 (146)
26 cd08876 START_1 Uncharacterize 99.2 1.1E-09 2.5E-14 94.5 16.8 155 64-224 25-195 (195)
27 cd08893 SRPBCC_CalC_Aha1-like_ 99.2 6.5E-10 1.4E-14 89.1 12.8 127 86-225 2-136 (136)
28 cd08894 SRPBCC_CalC_Aha1-like_ 99.2 2.2E-09 4.8E-14 88.2 15.7 132 87-225 3-139 (139)
29 KOG3177 Oligoketide cyclase/li 99.1 4.2E-10 9.2E-15 100.0 10.0 163 59-232 48-217 (227)
30 cd07816 Bet_v1-like Ligand-bin 99.1 1.9E-08 4.1E-13 84.5 18.0 107 86-196 3-122 (148)
31 cd08899 SRPBCC_CalC_Aha1-like_ 99.1 1.8E-09 3.8E-14 91.0 11.7 126 86-227 13-139 (157)
32 cd08901 SRPBCC_CalC_Aha1-like_ 99.0 7.8E-09 1.7E-13 84.9 13.6 130 87-226 3-133 (136)
33 cd08897 SRPBCC_CalC_Aha1-like_ 99.0 1.2E-08 2.6E-13 83.2 14.4 127 86-225 2-133 (133)
34 cd08898 SRPBCC_CalC_Aha1-like_ 99.0 1.7E-08 3.6E-13 81.9 14.2 130 86-225 3-145 (145)
35 cd08895 SRPBCC_CalC_Aha1-like_ 98.9 1.1E-07 2.4E-12 78.7 15.3 129 87-225 3-146 (146)
36 cd08896 SRPBCC_CalC_Aha1-like_ 98.9 2.3E-07 5E-12 76.8 16.3 130 87-225 3-146 (146)
37 cd08900 SRPBCC_CalC_Aha1-like_ 98.8 3.5E-07 7.7E-12 75.3 16.3 129 88-225 4-143 (143)
38 PF08327 AHSA1: Activator of H 98.8 2.1E-07 4.5E-12 73.5 12.6 118 93-224 1-124 (124)
39 cd07826 SRPBCC_CalC_Aha1-like_ 98.7 8.9E-07 1.9E-11 73.3 16.4 131 87-224 3-141 (142)
40 cd08891 SRPBCC_CalC Ligand-bin 98.5 4.3E-06 9.2E-11 69.4 14.7 131 87-225 3-149 (149)
41 COG4276 Uncharacterized conser 98.5 2.6E-06 5.7E-11 71.6 12.7 107 89-196 7-120 (153)
42 cd08892 SRPBCC_Aha1 Putative h 98.5 3.7E-06 8E-11 68.3 13.5 117 87-224 3-125 (126)
43 COG3832 Uncharacterized conser 98.4 1.2E-05 2.6E-10 67.8 14.2 132 84-224 8-148 (149)
44 cd08877 START_2 Uncharacterize 98.1 4.3E-05 9.3E-10 67.7 12.8 140 85-225 47-214 (215)
45 PTZ00220 Activator of HSP-90 A 98.1 2.1E-05 4.6E-10 64.8 10.0 88 92-190 1-93 (132)
46 cd08874 START_STARD9-like C-te 98.1 0.00012 2.5E-09 65.5 14.9 126 64-196 30-178 (205)
47 PF00407 Bet_v_1: Pathogenesis 98.1 0.00014 2.9E-09 61.9 14.6 112 84-197 4-126 (151)
48 cd08906 START_STARD3-like Chol 98.1 0.00028 6E-09 62.9 16.3 136 87-225 52-208 (209)
49 cd08905 START_STARD1-like Chol 98.0 0.00012 2.7E-09 65.0 13.7 136 87-225 52-208 (209)
50 cd08911 START_STARD7-like Lipi 98.0 0.00046 1E-08 61.2 17.3 174 42-224 9-205 (207)
51 cd08870 START_STARD2_7-like Li 98.0 0.00055 1.2E-08 60.6 17.3 151 67-223 37-206 (209)
52 cd08873 START_STARD14_15-like 98.0 0.00029 6.4E-09 64.3 14.6 109 87-198 80-208 (235)
53 cd08868 START_STARD1_3_like Ch 98.0 0.0008 1.7E-08 59.3 16.9 152 66-225 35-207 (208)
54 cd08871 START_STARD10-like Lip 97.9 0.00053 1.1E-08 61.0 15.6 155 64-225 31-202 (222)
55 cd00177 START Lipid-binding ST 97.8 0.0039 8.5E-08 52.3 17.9 149 65-220 24-189 (193)
56 cd08910 START_STARD2-like Lipi 97.8 0.0013 2.8E-08 58.5 14.9 155 64-224 33-205 (207)
57 smart00234 START in StAR and p 97.7 0.0028 6.1E-08 54.9 16.5 137 87-225 48-202 (206)
58 cd08869 START_RhoGAP C-termina 97.7 0.0013 2.9E-08 57.8 13.4 128 88-221 48-192 (197)
59 cd08903 START_STARD5-like Lipi 97.6 0.0052 1.1E-07 54.6 16.5 135 88-225 50-207 (208)
60 cd08867 START_STARD4_5_6-like 97.5 0.015 3.2E-07 51.1 17.5 133 88-223 50-205 (206)
61 cd08914 START_STARD15-like Lip 97.4 0.0024 5.2E-08 58.5 12.4 125 64-198 64-209 (236)
62 cd08913 START_STARD14-like Lip 97.2 0.016 3.5E-07 53.1 14.9 109 87-196 84-211 (240)
63 PF01852 START: START domain; 97.2 0.083 1.8E-06 45.5 18.7 134 87-225 49-202 (206)
64 cd08872 START_STARD11-like Cer 97.2 0.01 2.2E-07 54.0 13.4 159 64-227 34-228 (235)
65 cd08908 START_STARD12-like C-t 97.2 0.014 3E-07 52.3 13.7 134 78-221 49-199 (204)
66 PF11687 DUF3284: Domain of un 96.8 0.033 7.1E-07 45.6 12.0 103 88-199 3-108 (120)
67 PF10698 DUF2505: Protein of u 96.3 0.12 2.6E-06 43.9 12.9 103 87-193 2-127 (159)
68 PF11485 DUF3211: Protein of u 95.9 0.35 7.5E-06 41.0 13.3 117 86-219 3-123 (136)
69 cd08909 START_STARD13-like C-t 95.1 1.8 3.9E-05 38.9 15.8 142 68-220 40-199 (205)
70 cd08904 START_STARD6-like Lipi 94.6 1.9 4E-05 38.6 14.8 126 88-220 50-196 (204)
71 cd08902 START_STARD4-like Lipi 92.0 9 0.0002 34.5 15.0 112 88-199 51-179 (202)
72 PF08982 DUF1857: Domain of un 91.9 3.5 7.6E-05 35.2 11.5 121 95-226 19-148 (149)
73 COG4891 Uncharacterized conser 88.8 1.6 3.4E-05 34.7 6.1 76 148-225 13-92 (93)
74 PF09366 DUF1997: Protein of u 84.6 24 0.00051 29.9 13.1 120 100-223 5-144 (158)
75 KOG2936 Uncharacterized conser 84.2 3.8 8.3E-05 39.0 7.2 92 86-190 175-271 (301)
76 cd08863 SRPBCC_DUF1857 DUF1857 83.2 28 0.0006 29.7 14.8 93 95-196 18-112 (141)
77 KOG2761 START domain-containin 78.5 54 0.0012 30.0 12.9 162 60-224 33-217 (219)
78 PLN00188 enhanced disease resi 69.9 1.6E+02 0.0035 31.5 14.8 116 77-198 225-365 (719)
79 cd00680 RHO_alpha_C C-terminal 47.9 1.1E+02 0.0023 24.9 7.6 27 168-194 97-123 (188)
80 cd08907 START_STARD8-like C-te 44.2 2.5E+02 0.0053 25.5 12.9 144 68-220 40-199 (205)
81 PF10571 UPF0547: Uncharacteri 31.8 16 0.00035 22.2 0.1 8 247-254 18-25 (26)
82 COG2033 Desulfoferrodoxin [Ene 29.9 25 0.00053 29.4 0.9 20 251-270 67-86 (126)
83 PF11127 DUF2892: Protein of u 26.9 7.9 0.00017 27.9 -2.3 19 68-87 43-61 (66)
84 cd08864 SRPBCC_DUF3074 DUF3074 21.4 5.8E+02 0.013 22.7 10.3 114 106-223 62-206 (208)
85 cd06153 YjgF_YER057c_UK114_lik 20.9 1.7E+02 0.0038 23.3 4.3 38 207-245 33-70 (114)
No 1
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.97 E-value=5.8e-30 Score=221.32 Aligned_cols=159 Identities=28% Similarity=0.490 Sum_probs=145.6
Q ss_pred ccceeeeccCCCCCcccc---------cceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEe
Q 024198 65 RSSSIFTPSRHFFSPVME---------WQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKY 135 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~---------~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i 135 (271)
-++|+|-++|| -+|+++ |++++++++|++|+|+||+||.|+|++|.||.++.||++++++ +++|++..
T Consensus 43 gggliy~aatg-q~p~~~a~~~~g~~~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddk--rSrW~~~a 119 (217)
T COG5637 43 GGGLIYVAATG-QNPLATALKIEGMAKPIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDK--RSRWKANA 119 (217)
T ss_pred CceEEEEeecC-CChHHHHHHhhcccCceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCC--ccceeEcC
Confidence 46799999999 899864 8889999999999999999999999999999999999999997 69999999
Q ss_pred cccCeeEEEEEeEEEeeecCCeEEEEEEecC--CCceEEEEEEECCCCceEEEEEEEEEeCcchHH--HHHHhhhhHHHH
Q 024198 136 KAFGRDIEFSWLARNMQPIPNQKIHWRSLEG--LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVP--LHQHLNLFLKPY 211 (271)
Q Consensus 136 ~~~G~~~eftW~aeVTe~~P~~rI~w~sveG--~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~--~a~ll~~~~~r~ 211 (271)
+ +| .+++|+++||+.+|+++|.|++++| ++|.|.++|.+.+++.|+|.++++|.+||++.. .+++++..++++
T Consensus 120 p-~g--~~v~Wea~it~d~~~e~I~W~Sl~Ga~v~NsG~VrF~~~pg~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqq 196 (217)
T COG5637 120 P-LG--LEVEWEAEITKDIPGERIQWESLPGARVENSGAVRFYDAPGDSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQ 196 (217)
T ss_pred C-CC--ceEEEeehhhccCCCcEEeeecCCCCcCCCCccEEeeeCCCCceEEEEEEEecCCccHHHHHHHHHhccchHHH
Confidence 7 35 4777999999999999999999999 999999999999988999999999999999763 467788999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 024198 212 LDVDWIALQHLLKAISRL 229 (271)
Q Consensus 212 vr~~L~aFK~~aE~~~~~ 229 (271)
++.+|++||...|..+.+
T Consensus 197 I~~DL~RFk~~~e~~q~s 214 (217)
T COG5637 197 IQDDLERFKEYQENGQPS 214 (217)
T ss_pred HHHHHHHHHHHHHccCcc
Confidence 999999999999985543
No 2
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.87 E-value=4.1e-21 Score=156.74 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=112.6
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEecC
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLEG 166 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sveG 166 (271)
+.+++|++|+++||++++|+++||+|+|+|.+++++++++....++..++..|...+ |.++++ ..|++++.|++.+|
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~~~~g 78 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGGIRES--FTSRVT-LVPPESIEAELVDG 78 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeeccccEE--EEEEEE-ecCCCEEEEEecCC
Confidence 578999999999999999999999999999999999887665555555544465445 447776 45788999999999
Q ss_pred --CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 167 --LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 167 --~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
....|.|+|+|.++++|+|++.++|++++.+.. .+++.++++..+++|++|+++++.
T Consensus 79 ~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~--~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 79 PFKHLEGEWRFKPLGENACKVEFDLEFEFKSRLLE--ALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred ChhhceeEEEEEECCCCCEEEEEEEEEEECCHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999988999999999999876543 556788999999999999999975
No 3
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.87 E-value=8e-21 Score=152.94 Aligned_cols=135 Identities=33% Similarity=0.545 Sum_probs=115.7
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEec
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLE 165 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sve 165 (271)
.+.+++|+||+++||++++|++++|+|++++.+++++++. ..+|++..+. |... +|..++++.+|++++.|....
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~-g~~~--~~~~~v~~~~~~~~i~~~~~~ 76 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT--RSHWKAKGPA-GLSV--EWDAEITEQVPNERIAWRSVE 76 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC--ceEEEEecCC-CCcE--EEEEEEeccCCCCEEEEEECC
Confidence 3578999999999999999999999999999999998753 5778876542 5434 466999999999999999988
Q ss_pred CC-CceEEEEEEECCCCceEEEEEEEEEeCcchHH--HHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 166 GL-PNRGAVRFFPKGPSSCIVELTVSYEVPQLLVP--LHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 166 G~-~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~--~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
|. ...+.|+|+|.++++|+|+++++|++++.+.. ++.+++..+++.+++.|++||+.||.
T Consensus 77 ~~~~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE~ 139 (139)
T cd07817 77 GADPNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVET 139 (139)
T ss_pred CCCCcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhhC
Confidence 85 78999999998877899999999999877642 35667889999999999999999984
No 4
>PRK10724 hypothetical protein; Provisional
Probab=99.85 E-value=3.1e-20 Score=158.74 Aligned_cols=140 Identities=18% Similarity=0.267 Sum_probs=120.2
Q ss_pred eeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEe
Q 024198 85 DCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSL 164 (271)
Q Consensus 85 ~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sv 164 (271)
..+.++.|++|+++||++++|+++||+|+|+|.++++++..++.....+.+++.|...+ |+++++- .|+++|.|.++
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~~~~--f~srv~~-~~~~~I~~~~~ 92 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGISKT--FTTRNQL-TSNQSILMQLV 92 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCccEE--EEEEEEe-cCCCEEEEEec
Confidence 35577899999999999999999999999999999999877666666666666675455 5588877 47779999999
Q ss_pred cC--CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc
Q 024198 165 EG--LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAISRL 229 (271)
Q Consensus 165 eG--~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~~~~~ 229 (271)
+| ....|.|+|+|.++++|+|++.++|+++..+.. .+++..++...++++++|+++|++.|+.
T Consensus 93 ~GpF~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l~~--~~~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 93 DGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIE--LAFGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred CCChhhccceEEEEECCCCCEEEEEEEEEEEchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99 578999999999877899999999999887654 5677899999999999999999999874
No 5
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=99.85 E-value=1.2e-20 Score=158.83 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=126.2
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEec
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLE 165 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sve 165 (271)
.+.+..|+++|+++|++++|++.||+|+|||...++++.++.....++.+++.|.+..|+ ++|+-..+.+.|....++
T Consensus 4 ~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~e~F~--Trv~~~~~~~~I~~~l~~ 81 (146)
T COG2867 4 IERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIRETFT--TRVTLKPTARSIDMKLID 81 (146)
T ss_pred eEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhheeeeee--eeeeecCchhhhhhhhhc
Confidence 457789999999999999999999999999999999999888889999998889888877 888876444599999999
Q ss_pred C--CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc
Q 024198 166 G--LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAISRL 229 (271)
Q Consensus 166 G--~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~~~~~ 229 (271)
| ....|.|+|+|+++++|+|++.++|++.+.+.. +++++++++...+++++|.++|+..|+.
T Consensus 82 GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ll~--~~~g~~f~~~a~~mv~aF~kRA~~~y~~ 145 (146)
T COG2867 82 GPFKYLKGGWQFTPLSEDACKVEFFLDFEFKSRLLG--ALIGPVFKRLASKMVEAFEKRAKEVYGL 145 (146)
T ss_pred CChhhhcCceEEEECCCCceEEEEEEEeeehhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9 678999999999889999999999999987654 6788999999999999999999998864
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.82 E-value=1e-18 Score=139.33 Aligned_cols=136 Identities=23% Similarity=0.308 Sum_probs=112.1
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC--CEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEe
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP--DLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSL 164 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p--~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sv 164 (271)
+.++.|++|+++||++++|++++++|++++.+++.+++++ .++.|++.....|.... ++.++++.+|++++.|...
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~v~~~~p~~~~~~~~~ 79 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIE--LTYEITEYEPGRRVVFRGS 79 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEE--EEEEEEEecCCcEEEEEec
Confidence 4678999999999999999999999999999999886553 24667666544454444 5689999999999999988
Q ss_pred cC-CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 165 EG-LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 165 eG-~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
.| ....+.|+|+|.++ +|+|+++++|++++.+..+..++...+++.+++.|++||+.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 80 SGPFPYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred CCCcceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 77 77899999999874 79999999999854433345567788999999999999999985
No 7
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.81 E-value=1.8e-18 Score=145.47 Aligned_cols=137 Identities=13% Similarity=0.154 Sum_probs=108.2
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCE--EEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEE-
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDL--SKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRS- 163 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~--s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~s- 163 (271)
+.+++|++|+++||++++|+++||+|.|+|++++++++++.+ .+.++.....|. ..+|+++++...+..++..+.
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~--~~~w~s~~~~~~~~~~i~~~~~ 81 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGT--VWSWVSERTLDPVNRTVRARRV 81 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCE--EEEEEEEEEecCCCcEEEEEEe
Confidence 478999999999999999999999999999999999877654 444445533454 555778888776666777743
Q ss_pred ecC--CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhhc
Q 024198 164 LEG--LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAI 226 (271)
Q Consensus 164 veG--~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~~ 226 (271)
.+| ....+.|+|+|.++ ||+|++.++|+++++....+.++...+++..+..|++||++||..
T Consensus 82 ~~~p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~ 145 (146)
T cd08860 82 ETGPFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA 145 (146)
T ss_pred cCCCcceeeeeEEEEECCC-CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 344 57799999999975 599999999998864433345566678889999999999999973
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.80 E-value=3.6e-18 Score=139.01 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=103.4
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEE-EEecccCeeEEEEEeEEEeeecC-CeEEEEEEe
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWS-LKYKAFGRDIEFSWLARNMQPIP-NQKIHWRSL 164 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~-l~i~~~G~~~eftW~aeVTe~~P-~~rI~w~sv 164 (271)
+.+++|++|+++||++++|+++||+|+|+ .++++++.++...... ...+..|. .+.|+. .++.+| +++|.|...
T Consensus 2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~-~~~~~~~~~~i~~~~~ 77 (142)
T cd08861 2 EHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGS--VHTWTS-RRVLDPEGRRIVFRQE 77 (142)
T ss_pred eEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCc--EEEEEE-EEEEcCCCCEEEEEEe
Confidence 57899999999999999999999999999 8888777544332333 12222243 334544 334556 789999998
Q ss_pred c--C--CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 165 E--G--LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 165 e--G--~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
+ | ....|.|+|+|.++++|+|++.++|++++.+.....++...+++.+..+|++||+++|.
T Consensus 78 ~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 78 EPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred eCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 6 4 36799999999987789999999999886544344566778889999999999999984
No 9
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.80 E-value=3.9e-18 Score=137.11 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=108.8
Q ss_pred eeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecC-CCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEE
Q 024198 85 DCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDK-PDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRS 163 (271)
Q Consensus 85 ~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~-p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~s 163 (271)
+.+.+++|+||+++||++++|++++|+|++++.+++..++. ..+.+|++..+. + ..+. .+|++.+|+++++|+.
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~-~--~~~~--~~i~~~~p~~~~~~~~ 76 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPG-L--VRST--FTVTELRPGHSFTWTG 76 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCC-C--CceE--EEEEEecCCCEEEEEe
Confidence 35688999999999999999999999999999999998865 446777776642 2 3434 6789999999999998
Q ss_pred ecC-CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 164 LEG-LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 164 veG-~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
... ....++|+|+|.++++|+++++.+|..|.... ...++...+++.+++.|++||+.+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 77 PAPGISAVHRHEFEAKPDGGVRVTTSESLSGPLAFL-FGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred cCCCEEEEEEEEEEEcCCCcEEEEEEEEeecchHHH-HHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 764 66788999999876799999988777543211 23456778899999999999999984
No 10
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.79 E-value=1.3e-17 Score=136.02 Aligned_cols=137 Identities=12% Similarity=0.182 Sum_probs=103.1
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEE--EEEEecccCeeEEEEEeEEEeeecC-CeEEEEEE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSK--WSLKYKAFGRDIEFSWLARNMQPIP-NQKIHWRS 163 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~--w~l~i~~~G~~~eftW~aeVTe~~P-~~rI~w~s 163 (271)
+.++.|++|+++||++++|+++||+|+|+|.+++++++.+.... +....+..+....-..+.++++..+ ++++.++.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~ 81 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFEM 81 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEEE
Confidence 46899999999999999999999999999999999976544432 2211111110011111234455443 78999999
Q ss_pred ecC--CCceEEEEEEECCC-CceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 164 LEG--LPNRGAVRFFPKGP-SSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 164 veG--~~~~g~~~Fep~gd-ggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
++| ....|+|+|+|.++ ++|+|+++++++|.+++.. .+++..+++.+...|++||++||+
T Consensus 82 ~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~--~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 82 VEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPV--FLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred cCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCH--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 998 45699999999987 6899999999998765432 556678999999999999999985
No 11
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.77 E-value=2e-17 Score=135.65 Aligned_cols=106 Identities=19% Similarity=0.303 Sum_probs=88.8
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC------CEEEEEEEecccCeeEEEEEeEEEeeecCCeEEE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP------DLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIH 160 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p------~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~ 160 (271)
+.+++|++|+|+||++++|++|+|+|+|.+.+++++++.+ ....|++.. +|. .+.|++++|+++|++++.
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~--~~~--~~~w~~~it~~~p~~~f~ 77 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH--FGI--PQRWTTEITEVEPPRRFV 77 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe--cCC--ceEEEEEEEEEcCCCeEE
Confidence 4788999999999999999999999999999999986432 234555544 354 356999999999999999
Q ss_pred EEEecC-C-CceEEEEEEECCCCceEEEEEEEEEeCcch
Q 024198 161 WRSLEG-L-PNRGAVRFFPKGPSSCIVELTVSYEVPQLL 197 (271)
Q Consensus 161 w~sveG-~-~~~g~~~Fep~gdggTrVtl~ieye~pg~L 197 (271)
|++.+| . ...++++|+|.++ ||+|+.+++|++|+++
T Consensus 78 ~~~~~G~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p~g~ 115 (137)
T cd07820 78 DEQVSGPFRSWRHTHRFEAIGG-GTLMTDRVEYRLPLGP 115 (137)
T ss_pred EEeccCCchhCEEEEEEEECCC-ceEEEEEEEEeCCchh
Confidence 999998 3 4788999999875 7999999999998654
No 12
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.76 E-value=2.9e-17 Score=135.03 Aligned_cols=135 Identities=17% Similarity=0.219 Sum_probs=103.5
Q ss_pred eeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEee----cC--CCEEEEEEEecc-cCeeEEEEEeEEEeeecCCe
Q 024198 85 DCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILE----DK--PDLSKWSLKYKA-FGRDIEFSWLARNMQPIPNQ 157 (271)
Q Consensus 85 ~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~----d~--p~~s~w~l~i~~-~G~~~eftW~aeVTe~~P~~ 157 (271)
..+.+++|++|+++||++++|+++||+|+|++..++.+. +. +.+.++...... .| ... .++++.+|++
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~--~~v~~~~p~~ 77 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG---EGE--MEITESVPNE 77 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc---ceE--EEEEecCCCc
Confidence 356889999999999999999999999999988754431 11 123433433321 12 112 5678899999
Q ss_pred EEEEEEec-C-C--CceEEEEEEECCCCceEEEEEEEEEeCcchH--HHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 158 KIHWRSLE-G-L--PNRGAVRFFPKGPSSCIVELTVSYEVPQLLV--PLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 158 rI~w~sve-G-~--~~~g~~~Fep~gdggTrVtl~ieye~pg~L~--~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
+++|+... | . ...+.|+|+|.+ +||+|+++++|++|+... .++.++...+++.+++.|++||+++|+
T Consensus 78 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 78 RIEYELRFIKPFEATNDVEFTLEPVG-GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEEEEEecCCccccceEEEEEEEcC-CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999974 4 3 679999999995 689999999999987643 345667788899999999999999985
No 13
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.76 E-value=1.1e-16 Score=128.07 Aligned_cols=133 Identities=26% Similarity=0.351 Sum_probs=106.9
Q ss_pred eeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecC-CeEEEEEE
Q 024198 85 DCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIP-NQKIHWRS 163 (271)
Q Consensus 85 ~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P-~~rI~w~s 163 (271)
+.+.+++|++|+++||++++|++++++|.|.+.+++.+++++....+.+... |+ ..+. .++++.+| ++.+.|+.
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--g~-~~~~--~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVA--GR-GTVR--EEITEYDPEPRRITWRF 77 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEEC--SC-SEEE--EEEEEEETTTTEEEEEE
T ss_pred EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEec--cc-ccee--EEEEEecCCCcEEEEEE
Confidence 4578899999999999999999999999999999999984434666777765 53 3434 67888888 89999999
Q ss_pred e-cC-CCceEEEEEEECCCCceEEEEEEEEEeCcchHHH-HHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 164 L-EG-LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPL-HQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 164 v-eG-~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~-a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
. .| ....++|+|+|.++ ||+|++++++++ +....+ ..++.+.+++.+++.|++||+.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 78 VPSGFTNGTGRWRFEPVGD-GTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp ESSSSCEEEEEEEEEEETT-TEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecceeEEEEEEEEEEcCC-CEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5 44 56799999999884 599999999997 222222 345677899999999999999998
No 14
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.74 E-value=1.7e-16 Score=126.83 Aligned_cols=132 Identities=22% Similarity=0.321 Sum_probs=107.6
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC-CEEEEEEEecccCeeEEEEEeEEEeeecCC-eEEEEEE
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP-DLSKWSLKYKAFGRDIEFSWLARNMQPIPN-QKIHWRS 163 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p-~~s~w~l~i~~~G~~~eftW~aeVTe~~P~-~rI~w~s 163 (271)
.+.+++|++|+++||++++|++++++|++++.+++..++++ .++.+.+.... | ..+ ..++++.+|+ +++.|+.
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~-g--~~~--~~~i~~~~~~~~~i~~~~ 77 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKD-G--GTV--RERLLALDDAERRYSYRI 77 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCC-C--CEE--EEEehhcCccCCEEEEEe
Confidence 46789999999999999999999999999999999887643 35666666642 3 233 3778888888 9999999
Q ss_pred ecC----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 164 LEG----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 164 veG----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
.+| ....+.|+|+|.++++|+|+++++|++++.+ .+.+++..++..++..|++||+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 78 VEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGL--TDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred cCCCCCcccceEEEEEEECCCCccEEEEEEEEecCCCc--chHHHHHHHHHHHHHHHHHHHHhhC
Confidence 976 3568999999998778999999999988752 2244566788999999999999875
No 15
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.74 E-value=1.7e-16 Score=127.54 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=100.4
Q ss_pred ceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC--CEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEE
Q 024198 84 QDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP--DLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHW 161 (271)
Q Consensus 84 ~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p--~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w 161 (271)
++.+.+++|+||+++||++++|++++|+|+|+|.+++++++++ ....+++..+..+...+ |.++++... +.++.|
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~i~~ 78 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGIKDT--YALEYTWDG-AGSVSW 78 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeEEEE--EEEEEEEcC-CCcEEE
Confidence 4678899999999999999999999999999999999976543 12334444433233333 446766654 678999
Q ss_pred EEecC---CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 024198 162 RSLEG---LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLL 223 (271)
Q Consensus 162 ~sveG---~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~a 223 (271)
+..+| ....+.|+|+|.++ +|+|++++++++.+.+.. .+++.+.++.....+++|+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 79 TLVEGEGNRSQEGSYTLTPKGD-GTRVTFDLTVELTVPLPG--FLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EEecccceeEEEEEEEEEECCC-CEEEEEEEEEEecCCCCH--HHHHHhhhHHHHHHHHhHhhhC
Confidence 99887 35689999999986 899999999998665432 3344566777778888888764
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.74 E-value=1.5e-16 Score=128.45 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=103.4
Q ss_pred eeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEe
Q 024198 85 DCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSL 164 (271)
Q Consensus 85 ~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sv 164 (271)
+.+.++.|++|+++||++++|++++++|+|++.++++++++ ...+.++.+.++...+++...++++.+|++++.+...
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPN--EYEATVKLKVGPVKGTFKGKVELSDLDPPESYTITGE 79 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCC--eEEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEEE
Confidence 45678999999999999999999999999999999988765 3444444332232334444578888888888888876
Q ss_pred c-C----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHH-HHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 165 E-G----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPL-HQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 165 e-G----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~-a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
. + ....+.|+|+|. +++|+|+++++++++|.+..+ +.+++...++.+...++++|+.++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 80 GKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred EcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3 2 356899999998 578999999999988765333 344566777777777777877663
No 17
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.72 E-value=2.9e-16 Score=129.98 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=97.8
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeec-CC--CEEEEEEEe-cccCeeEEEEEeEEEeeecCCeEEEEE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILED-KP--DLSKWSLKY-KAFGRDIEFSWLARNMQPIPNQKIHWR 162 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d-~p--~~s~w~l~i-~~~G~~~eftW~aeVTe~~P~~rI~w~ 162 (271)
..+.+|++|+|+||++++|+++||+|++++.++++++. ++ .+.+|++.. +..|.. ++++.++++.+|++++.|.
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~v~~~~p~~~~~~~ 81 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYR--LRFELRVTRIEPLSLLEVR 81 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcE--EEEEEEEEeecCCcEEEEE
Confidence 35679999999999999999999999999999999872 22 346676543 222433 4455889999999999998
Q ss_pred EecCCCceEEEEEEECCCCceEEEEEEEEEeCcchHH-HHHHhh----hhHHHHHHHHHHHHHHH
Q 024198 163 SLEGLPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVP-LHQHLN----LFLKPYLDVDWIALQHL 222 (271)
Q Consensus 163 sveG~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~-~a~ll~----~~~~r~vr~~L~aFK~~ 222 (271)
...+....++|+|+|.+ +||+|+++.++++++.+.. ++.+++ ...++.++..+++||++
T Consensus 82 ~~g~~~~~~~~~~~~~~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 82 ASGDLEGVGRWTLAPDG-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEeeeEEEEEEEEEcC-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 64336778999999965 5799999999999875322 233334 44555555555666654
No 18
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.71 E-value=3.7e-16 Score=129.37 Aligned_cols=135 Identities=16% Similarity=0.096 Sum_probs=105.7
Q ss_pred EEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeec-CCeEEEEEEec-
Q 024198 88 VKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPI-PNQKIHWRSLE- 165 (271)
Q Consensus 88 vSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~-P~~rI~w~sve- 165 (271)
.+++|++|+++||++++|+++++.|+|++++++.++++ ...|++++..++....|+.+.++++.+ |++++.+....
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDD--EYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATGK 80 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCC--eEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEEe
Confidence 46789999999999999999999999999999987754 576776665545555655457788887 88888876543
Q ss_pred -----C-CCceEEEEEEECCCCceEEEEEEEEEeCcchHHH-HHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 166 -----G-LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPL-HQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 166 -----G-~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~-a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
| ......+++.| ++++|+|++++++++.|.+..+ ..+++...++.++..+++||+++|.
T Consensus 81 ~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e~ 146 (146)
T cd07823 81 DARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLAA 146 (146)
T ss_pred cCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 24566899999 5578999999999998877654 3456777788888888888888874
No 19
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.69 E-value=4.9e-16 Score=124.82 Aligned_cols=124 Identities=23% Similarity=0.344 Sum_probs=94.9
Q ss_pred EcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEecC--CCc
Q 024198 92 IDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLEG--LPN 169 (271)
Q Consensus 92 I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sveG--~~~ 169 (271)
|+||+++||++++|+++||+|+|.|.+++++++.+.+.....++...+.... |.+++++..++. +.....+| ...
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~~~ 77 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGIKRS--WTSRVTEDPPER-IRFEQISGPFKSF 77 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTTCEE--EEEEEEEECTTT-EEEESSETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCEEEE--EEEEEEEEEeee-eeeeecCCCchhc
Confidence 7899999999999999999999999999999887654333334444454444 668998887766 88888888 678
Q ss_pred eEEEEEEECCC----CceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHH
Q 024198 170 RGAVRFFPKGP----SSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQ 220 (271)
Q Consensus 170 ~g~~~Fep~gd----ggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK 220 (271)
.|.|+|+|.++ .+|+|++.+++++++.+.. .+++.++++.+++.+++||
T Consensus 78 ~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 78 EGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPG--FLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEETTECCEEEEEEEEEEEEETSSSSHH--HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHH--HHHHHHHHHHHHHHHHhhC
Confidence 99999999984 3466777766666665533 4556778888888888886
No 20
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.69 E-value=2.5e-15 Score=120.11 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=101.5
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEee-cCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEec
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILE-DKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLE 165 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~-d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sve 165 (271)
+.+++|++|+++||++++|++++|+|++++.+++..+ +.+.+..+....+ .|.... +..++++.+|++++.|+...
T Consensus 3 ~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~--~~~~v~~~~p~~~~~~~~~~ 79 (141)
T cd07822 3 STEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLP-GGPPRS--FKPRVTEVEPPRRLAWRGGL 79 (141)
T ss_pred EEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCC-CCCcEE--EEEEEEEEcCCCEeEEEecC
Confidence 5788999999999999999999999999998887652 2223455555443 123334 45899999999999999987
Q ss_pred C-C---CceEEEEEEECCCCceEEEEEEEEEeCcchHH-HHHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 166 G-L---PNRGAVRFFPKGPSSCIVELTVSYEVPQLLVP-LHQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 166 G-~---~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~-~a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
+ . ...+.|+|+|.++++|+|+++..|.. .+.. .+..+.+.+.+..++.+++||+.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 80 PFPGLLDGEHSFELEPLGDGGTRFVHRETFSG--LLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred CCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEE--EEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 7 2 36788999998668999999876653 3332 2345667788888888999998886
No 21
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.63 E-value=8.3e-15 Score=119.42 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=96.3
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEee-c--CCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILE-D--KPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRS 163 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~-d--~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~s 163 (271)
+.+++|+||+++||++++|++++|+|++......... + ...+.++++.....|.... +..++++.+|++++.|+.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~--~~~~v~~~~p~~~l~~~~ 80 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGPYR--ITNHVVAFEENRLIAWRP 80 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCceE--EEEEEEEECCCCEEEEEc
Confidence 5789999999999999999999999997533221211 1 1123444444332243344 448899999999999997
Q ss_pred e-cC---CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 164 L-EG---LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 164 v-eG---~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
. .+ .....+++|+|.++++|+|+++.+|..++.+.... .+....++..+..|++||+++|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~-~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 81 GPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELL-GFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred cCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhcc-ccCCCCHHHHHHHHHHHHHHhC
Confidence 5 22 34567899999887889999998888665433221 1334578899999999999986
No 22
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.59 E-value=1.2e-13 Score=106.61 Aligned_cols=133 Identities=25% Similarity=0.290 Sum_probs=98.8
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCC--EEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEe
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPD--LSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSL 164 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~--~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sv 164 (271)
+.++.|++|+++||++++|++++++|++++.+++.+.+++. ...+..... .+.... +..++++..|+..+.|...
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~ 78 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRK-GGRRLT--LTSEVTEVDPPRPGRFRVT 78 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEec-CCcccc--ceEEEEEecCCCceEEEEe
Confidence 46789999999999999999999999999999998876532 233333321 132233 5588999888888888888
Q ss_pred cC-C--CceEEEEEEECCCCceEEEEEEEEEeCcchH-HHHHHhhhhHHHHHHHHHHHHHHH
Q 024198 165 EG-L--PNRGAVRFFPKGPSSCIVELTVSYEVPQLLV-PLHQHLNLFLKPYLDVDWIALQHL 222 (271)
Q Consensus 165 eG-~--~~~g~~~Fep~gdggTrVtl~ieye~pg~L~-~~a~ll~~~~~r~vr~~L~aFK~~ 222 (271)
.+ . ...+.|.|++.++++|+|+++.++++++... ....++...+++.+.+.+++||+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 79 GGGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred cCCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 76 2 6799999999886689999999999887654 122344555666666666666653
No 23
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.59 E-value=6.2e-14 Score=112.49 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=96.9
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEecC
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLEG 166 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sveG 166 (271)
+.+++|++|+++||++++|++++|+|++.+..++.....++...+.... ..|.... +..++++.+|++++.|+...+
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~-~~g~~~~--~~~~i~~~~~~~~i~~~~~~~ 79 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTG-PDGEEGW--VSGEVLEVEPPRRLVFTWAFS 79 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEEC-CCCCEEe--ccEEEEEEcCCCeEEEEeccc
Confidence 4788999999999999999999999999733333222211122322222 2233344 348899999999999988874
Q ss_pred -----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 167 -----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 167 -----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
......|+|+|.+ ++|+|+++.++.+++.. +..+....++..+..|++||+++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 80 DETPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA---EQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred CCCCCCceEEEEEEEECC-CCEEEEEEEEccChHhH---HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 5679999999988 68999999999976432 2334456778888999999999985
No 24
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=99.38 E-value=2.7e-11 Score=100.69 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=95.3
Q ss_pred EEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEE--EEEecC
Q 024198 89 KSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIH--WRSLEG 166 (271)
Q Consensus 89 Si~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~--w~sveG 166 (271)
+.+|++|+++||+++.|++++-.-+|+|.+++.++ + ...|+++++.++.+.+|+-+.++++.+++.... .+..+.
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~--~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~~~~~g~g~ 78 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-D--EYKGKVKVKVGPIKGTFDGEVRITEIDPPESYTLEFEGRGR 78 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-T--EEEEEEEEESCCCEEEEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-c--EEEEEEEEEeccEEEEEEEEEEEEEcCCCcceEeeeeccCC
Confidence 57899999999999999999999999999999998 5 899999887777778888889999988887744 444332
Q ss_pred ---CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 024198 167 ---LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLL 223 (271)
Q Consensus 167 ---~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~a 223 (271)
....+..++...++++|+|++..++++.|.+..++. ++++..+++.++.|-+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~---~~i~~~~~~l~~~f~~~l 135 (140)
T PF06240_consen 79 GGGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQ---RLIESVARRLIEQFFENL 135 (140)
T ss_dssp TCCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-H---HHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 333556666666656699999999999887655442 344555555555444433
No 25
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.26 E-value=2.4e-10 Score=96.93 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=102.2
Q ss_pred eeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEee-ecCCeEEEEEE
Q 024198 85 DCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQ-PIPNQKIHWRS 163 (271)
Q Consensus 85 ~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe-~~P~~rI~w~s 163 (271)
+.+.+..|++|+++||++++|||.+.+-+|+|.+++..++ ...++++...+-.+.+|.-+.+..+ .+|++.++...
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~---e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g 78 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGD---EYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITING 78 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeecCC---eEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEe
Confidence 4567899999999999999999999999999999998886 6777776554344456665567777 67888999888
Q ss_pred ecC-----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHH-HHhhhhHHHHHHHHHHHHHHHH
Q 024198 164 LEG-----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLH-QHLNLFLKPYLDVDWIALQHLL 223 (271)
Q Consensus 164 veG-----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a-~ll~~~~~r~vr~~L~aFK~~a 223 (271)
..| ......+..+|.+++ |+|.+..+-+.-|.+..++ ++++...++.+++..++|+..+
T Consensus 79 ~G~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l 143 (146)
T COG3427 79 SGGGAAGFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSEL 143 (146)
T ss_pred ecccccceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 873 466788889997754 9999999888765555554 3455555666666666665543
No 26
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.20 E-value=1.1e-09 Score=94.52 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=102.4
Q ss_pred cccceeeeccCCCCCcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCC---EEEEEEEecccCe
Q 024198 64 KRSSSIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPD---LSKWSLKYKAFGR 140 (271)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~---~s~w~l~i~~~G~ 140 (271)
+.+.-+|+.-.+ .+++ ....++.+|++|+++||+++.|++.+|+|.+++.+.++++..+. .....+..+..-.
T Consensus 25 ~~~v~v~~~~~~-~~~~---~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs 100 (195)
T cd08876 25 KDGIKVYTRDVE-GSPL---KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVK 100 (195)
T ss_pred CCCeEEEEEECC-CCCe---EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccC
Confidence 445455554333 2332 23457778999999999999999999999999999999976543 2333333331001
Q ss_pred eEEEEEeEEEeeecCCeE--EEEEEecC-----------CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhh
Q 024198 141 DIEFSWLARNMQPIPNQK--IHWRSLEG-----------LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLF 207 (271)
Q Consensus 141 ~~eftW~aeVTe~~P~~r--I~w~sveG-----------~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~ 207 (271)
..+|....+.....++.. +.+.+.+. ....+.|.|+|.++++|+|++.+.++|.|.+-. .+++..
T Consensus 101 ~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~--~lv~~~ 178 (195)
T cd08876 101 DRDMVLRSTTEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPG--WLANAF 178 (195)
T ss_pred CceEEEEEEEEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCH--HHHHHH
Confidence 234442122211111333 45554421 245778999999888999999999998776543 345567
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024198 208 LKPYLDVDWIALQHLLK 224 (271)
Q Consensus 208 ~~r~vr~~L~aFK~~aE 224 (271)
.++.+.+.+++||++|.
T Consensus 179 ~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 179 AKDAPYNTLENLRKQLK 195 (195)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 78899999999999873
No 27
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=99.17 E-value=6.5e-10 Score=89.11 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=85.7
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEec
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLE 165 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sve 165 (271)
-+.++.|++|+++||+.++|++++++|..... + ..+-..+.+|....+.. ....+. .++++.+|++++.|+-..
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~--~~~~~~G~~~~~~~~~~-~~~~~~--~~v~~~~~~~~l~~~~~~ 75 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-V--ESDWKVGSAFEYRRGDD-GTVDVE--GEVLESDPPRRLVHTWRA 75 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecccc-c--ccCCcCCCeEEEEeCCC-cccccc--eEEEEecCCCeEEEEEec
Confidence 35789999999999999999999999988732 1 11111234555554311 122333 778888999998766542
Q ss_pred C--------CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 166 G--------LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 166 G--------~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
+ .....++.|+|.+ ++|+++++.+..+++.. +....++-....|++||+++|+
T Consensus 76 ~~~~~~~~~~~~~v~~~l~~~~-~~t~l~~~~~~~~~~~~------~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 76 VWDPEMAAEPPSRVTFEIEPVG-DVVKLTVTHDGFPPGSP------TLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred CCCcccCCCCCEEEEEEEEecC-CcEEEEEEecCCCCchh------HHHhhhcCHHHHHHHHHHHhcC
Confidence 2 2457889999976 58999888765444321 1224456677789999999984
No 28
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.16 E-value=2.2e-09 Score=88.20 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=88.6
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhccc--CCceEE-EeecCCCEEEEEEEe-cccCeeEEEEEeEEEeeecCCeEEEEE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMP--FISSVK-ILEDKPDLSKWSLKY-KAFGRDIEFSWLARNMQPIPNQKIHWR 162 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmp--gv~sVe-vl~d~p~~s~w~l~i-~~~G~~~eftW~aeVTe~~P~~rI~w~ 162 (271)
+.+.+|++|+++||+.++|++.+.+|+. ++.... ..+.. .+..|++.. ...|..... ..++++.+|+++|.+.
T Consensus 3 ~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~-~GG~~~~~~~~~~g~~~~~--~g~v~e~~p~~~l~~t 79 (139)
T cd08894 3 VTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLR-PGGRWRFVMHGPDGTDYPN--RIVFLEIEPPERIVYD 79 (139)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEec-CCCEEEEEEECCCCCEecc--eEEEEEEcCCCEEEEE
Confidence 5778999999999999999999999974 221111 11111 123455433 112433332 3789999999999988
Q ss_pred EecC-CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 163 SLEG-LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 163 sveG-~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
-..+ .....+++|+|.+ ++|+|+++..|..+. .....+...+.......|++|++++|.
T Consensus 80 ~~~~~~~~~v~~~~~~~~-~gT~ltl~~~~~~~~---~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 80 HGSGPPRFRLTVTFEEQG-GKTRLTWRQVFPTAA---ERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred eccCCCcEEEEEEEEECC-CCEEEEEEEEcCCHH---HHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 7654 5567889999976 789999997654221 111222345667778889999998873
No 29
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=99.11 E-value=4.2e-10 Score=99.98 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=124.4
Q ss_pred CCCcccccceeeeccCCCCCcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC-CEEEEEEEecc
Q 024198 59 PHGSFKRSSSIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP-DLSKWSLKYKA 137 (271)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p-~~s~w~l~i~~ 137 (271)
|-...+|+++.+.+ + -.-.-..++....|.+++++||+.++|++.|-+|.|+|++..+.+.+| ......+.+++
T Consensus 48 ~~~p~~R~f~~~~~--~---~~~r~k~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGF 122 (227)
T KOG3177|consen 48 PGLPLRRSFFGFSA--P---FTNREKAYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGF 122 (227)
T ss_pred CCcchhhheeeecC--C---cchHHHHHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecC
Confidence 33336888777764 2 111223344567899999999999999999999999999999998875 34677888877
Q ss_pred cCeeEEEEEeEEEeeecCCeEEEEEEecC---CCceEEEEEEECC--CCceEEEEEEEEEeCcchH-HHHHHhhhhHHHH
Q 024198 138 FGRDIEFSWLARNMQPIPNQKIHWRSLEG---LPNRGAVRFFPKG--PSSCIVELTVSYEVPQLLV-PLHQHLNLFLKPY 211 (271)
Q Consensus 138 ~G~~~eftW~aeVTe~~P~~rI~w~sveG---~~~~g~~~Fep~g--dggTrVtl~ieye~pg~L~-~~a~ll~~~~~r~ 211 (271)
.+...+|+ +.||-. ++..+.-.-.+| -.....|+|.|.. ++.|.|.+.++||+.+.+= .++. -+++..
T Consensus 123 k~l~E~y~--S~Vt~~-~p~l~kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~lhs~va~---~Ffd~V 196 (227)
T KOG3177|consen 123 KPLDERYT--SNVTCV-KPHLTKTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSLLHSQVAT---IFFDEV 196 (227)
T ss_pred cccchhhe--eeeEEe-cccceEEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEehhHHHHHHHH---HHHHHH
Confidence 67777877 777765 555665556666 3568999999987 6789999999999987653 3333 367889
Q ss_pred HHHHHHHHHHHHhhcccccce
Q 024198 212 LDVDWIALQHLLKAISRLNFR 232 (271)
Q Consensus 212 vr~~L~aFK~~aE~~~~~~~~ 232 (271)
++.++.+|.++|+..++....
T Consensus 197 ~~~~v~AF~~ra~~~~gp~~~ 217 (227)
T KOG3177|consen 197 VKQMVNAFEQRARKLYGPESL 217 (227)
T ss_pred HHHHHHHHHHHHHHhhCcccc
Confidence 999999999999999876543
No 30
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.07 E-value=1.9e-08 Score=84.50 Aligned_cols=107 Identities=23% Similarity=0.342 Sum_probs=82.4
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCC-c-hhcccCCceEEEeecC-CCE--EEEEEEecccCeeEEEEEeEEEeeecC-CeEE
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRES-I-PRWMPFISSVKILEDK-PDL--SKWSLKYKAFGRDIEFSWLARNMQPIP-NQKI 159 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en-~-P~wmpgv~sVevl~d~-p~~--s~w~l~i~~~G~~~eftW~aeVTe~~P-~~rI 159 (271)
.+.+++|++|+|+||+++.|+++ + +.|.|.+.+++.++++ ..+ ..|.+.. ++.... +..+++..++ ++.+
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~--~~~~~~--~kE~l~~~D~~~~~~ 78 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP--GGKVKY--VKERIDAVDEENKTY 78 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC--CCcceE--EEEEEEEEcccccEE
Confidence 46789999999999999999994 5 5689999999988643 223 3455433 232122 4588888877 6899
Q ss_pred EEEEecC-CC------ceEEEEEEECCCCceEEEEEEEEEeCcc
Q 024198 160 HWRSLEG-LP------NRGAVRFFPKGPSSCIVELTVSYEVPQL 196 (271)
Q Consensus 160 ~w~sveG-~~------~~g~~~Fep~gdggTrVtl~ieye~pg~ 196 (271)
.|+.++| .. ..++++|.|.++++|.|+++++|++...
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Confidence 9999998 32 3789999999878999999999998665
No 31
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.07 E-value=1.8e-09 Score=91.02 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=90.8
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEec
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLE 165 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sve 165 (271)
-+.+++|++|+++||+.++|++++++|.+.. ..+. . .+..++......+ .+.+..++++.+|++++.|+...
T Consensus 13 i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~-~~~~-~---~G~~~~~~~~~~~---~~~~~~~v~e~~p~~~l~~~~~~ 84 (157)
T cd08899 13 LRFERLLPAPIEDVWAALTDPERLARWFAPG-TGDL-R---VGGRVEFVMDDEE---GPNATGTILACEPPRLLAFTWGE 84 (157)
T ss_pred EEEEEecCCCHHHHHHHHcCHHHHHhhcCCC-CCCc-c---cCceEEEEecCCC---CCccceEEEEEcCCcEEEEEecC
Confidence 4588999999999999999999999999843 2211 1 1234444432111 22344889999999999888775
Q ss_pred C-CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc
Q 024198 166 G-LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAIS 227 (271)
Q Consensus 166 G-~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~~~ 227 (271)
+ .....+++|++.+ ++|+|++..++.+.. .. ...........|++||+++|.+.
T Consensus 85 ~~~~~~~~~~l~~~~-~gT~v~~~~~~~~~~---~~----~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 85 GGGESEVRFELAPEG-DGTRLTLTHRLLDER---FG----AGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred CCCCceEEEEEEEcC-CCEEEEEEEeccCch---hh----hhhhcccHHHHHHHHHHHHcCCC
Confidence 5 6678899999976 689999998776433 11 12345677788999999999876
No 32
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.03 E-value=7.8e-09 Score=84.89 Aligned_cols=130 Identities=18% Similarity=0.115 Sum_probs=89.1
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEecC
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLEG 166 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sveG 166 (271)
+.++.|+||+++||+.++|++.+.+|...-.+.+...+ +...|..... +. .+. .++++.+|++++.++-..+
T Consensus 3 ~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~~G--g~~~~~~~~~--~~--~~~--g~~~~~~p~~~l~~~w~~~ 74 (136)
T cd08901 3 KTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLEEG--KTVTWDWEMY--GA--SVP--VNVLEIEPNKRIVIEWGDP 74 (136)
T ss_pred eEEEEecCCHHHHHHHhcCHHHhccccccCCCccccCC--CEEEEEEEcc--CC--ceE--EEEEEEcCCCEEEEEecCC
Confidence 57899999999999999999999998555444443222 2556666543 32 333 6889999999998776553
Q ss_pred -CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhhc
Q 024198 167 -LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAI 226 (271)
Q Consensus 167 -~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~~ 226 (271)
.....+++|++.++++|+++++-.. +|..-....... ..........|++||+++|.+
T Consensus 75 ~~~s~v~~~l~~~~~ggT~ltl~~~~-~~~~~~~~~~~~-~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 75 GEPTTVEWTFEELDDGRTFVTITESG-FPGTDDEGLKQA-LGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred CCCEEEEEEEEECCCCcEEEEEEECC-CCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHhcC
Confidence 5567899999987678999999643 343221110100 012355667789999999975
No 33
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.02 E-value=1.2e-08 Score=83.18 Aligned_cols=127 Identities=15% Similarity=0.216 Sum_probs=83.9
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCCchhcccCCce-----EEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEE
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRESIPRWMPFISS-----VKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIH 160 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~s-----Vevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~ 160 (271)
-+.++.|+||+++||+.|+|++.+.+|+..... .+..-..++...+.+... .|. ..+....++.+.+|++++.
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~-~g~-~~~~~~g~~~ei~p~~~l~ 79 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAK-DGS-MGFDFEGTYTEVEPHKLIE 79 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcC-CCC-cccccceEEEEECCCCEEE
Confidence 357899999999999999999999999765322 211111112344444322 121 1222348899999999999
Q ss_pred EEEecCCCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 161 WRSLEGLPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 161 w~sveG~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
++..++ ...+++|+|.+ ++|+++++ +..... .. ......--...|++||+++|.
T Consensus 80 ~~~~~~--~~v~~~l~~~~-~gT~l~l~--~~~~~~--~~----~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 80 YTMEDG--REVEVEFTEEG-DGTKVVET--FDAENE--NP----VEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEcCCC--CEEEEEEEECC-CCEEEEEE--ECCCCC--Cc----HHHHHHHHHHHHHHHHHHhhC
Confidence 987654 56899999976 78999987 332111 00 113456667889999999874
No 34
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.99 E-value=1.7e-08 Score=81.91 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=84.5
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCee-EEEEEeEEEeeecCCeEEEEEEe
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRD-IEFSWLARNMQPIPNQKIHWRSL 164 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~-~eftW~aeVTe~~P~~rI~w~sv 164 (271)
.+.+++|+||+++||+.++|++.+++|.+... .. ...+ .+...++... |.. .. +..++++.+|++++.|+..
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~-~~~~-~~~~g~~~~~--~~~~~~--~~~~i~~~~p~~~l~~~~~ 75 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEHFGQWFGVKL-GP-FVVG-EGATGEITYP--GYEHGV--FPVTVVEVDPPRRFSFRWH 75 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhhhhhcccccC-CC-cccC-CcceeEEecC--CCCccc--eEEEEEEeCCCcEEEEEec
Confidence 35789999999999999999999999998653 11 1111 1222233332 211 23 3478999999999988764
Q ss_pred cC-----------CCceEEEEEEECCCCceEEEEEEE-EEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 165 EG-----------LPNRGAVRFFPKGPSSCIVELTVS-YEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 165 eG-----------~~~~g~~~Fep~gdggTrVtl~ie-ye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
.+ .....+++|+|.+ ++|+|+++.. +...+--... . .......-....|+.||+++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~~-~-~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 76 PPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERRA-E-AYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred CCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHHH-H-HHHhhhhhHHHHHHHHHHHhcC
Confidence 32 2346789999986 6799999865 2211100010 1 1224566777889999999874
No 35
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.88 E-value=1.1e-07 Score=78.65 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=83.7
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCc-e--EEEeecCC-CEEEEEEEecc------cCeeEEEEEeEEEeeecCC
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFIS-S--VKILEDKP-DLSKWSLKYKA------FGRDIEFSWLARNMQPIPN 156 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~-s--Vevl~d~p-~~s~w~l~i~~------~G~~~eftW~aeVTe~~P~ 156 (271)
+.+..|+||+++||++|+|++.+.+|.+.-. . +...+..+ ......+.... .|.... ...++++.+|+
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~--~~g~v~~v~p~ 80 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDV--FGGRFLELVPN 80 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEee--eEEEEEEEcCC
Confidence 4678999999999999999999999976322 1 11122211 12333333211 122223 34789999999
Q ss_pred eEEEEEEe--cC---CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 157 QKIHWRSL--EG---LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 157 ~rI~w~sv--eG---~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
++|.++.. ++ .....+++|++.+ ++|+|+++...- +.... ...........|++|++++|+
T Consensus 81 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~T~lt~~~~~~-~~~~~------~~~~~~GW~~~l~~L~~~le~ 146 (146)
T cd08895 81 ERIVYTDVFDDPSLSGEMTMTWTLSPVS-GGTDVTIVQSGI-PDGIP------PEDCELGWQESLANLAALVEA 146 (146)
T ss_pred CEEEEEEEecCCCCCceEEEEEEEEecC-CCEEEEEEEeCC-Cchhh------hhHHHHHHHHHHHHHHHHhcC
Confidence 99888753 22 2336889999976 789999987532 22211 124567778889999998874
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.85 E-value=2.3e-07 Score=76.79 Aligned_cols=130 Identities=12% Similarity=0.170 Sum_probs=82.6
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccC----Cc--eEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPF----IS--SVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIH 160 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpg----v~--sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~ 160 (271)
+.+..|+||+++||+.|+|++.+.+|... +. +++...+ +..++.+..+ .|.... ...++.+.+|+++|.
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~G--G~~~~~~~~~-~g~~~~--~~g~v~~i~p~~~l~ 77 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPG--GAFRTVMRGP-DGEEFP--NPGCFLEVVPGERLV 77 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecC--cEEEEEEECC-CCCEec--ceEEEEEEeCCCEEE
Confidence 46789999999999999999999999762 11 2222221 2333333322 243333 337899999999988
Q ss_pred EEEe--cC-C----C-ceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 161 WRSL--EG-L----P-NRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 161 w~sv--eG-~----~-~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
++-. ++ . . ...+++|+|.+ ++|+++++..+..+... . ......+..-....|++||+++|+
T Consensus 78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~~~~~-~--~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 78 FTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWTEADR-K--QHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCCHHHH-H--HHHHcCHHHHHHHHHHHHHHHHhC
Confidence 7632 22 1 1 35789999976 78999987544321111 1 111122456677889999998874
No 37
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.82 E-value=3.5e-07 Score=75.30 Aligned_cols=129 Identities=17% Similarity=0.081 Sum_probs=81.7
Q ss_pred EEEEEcCCHHHHHHHHhCCCCchhcccC-----CceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEE
Q 024198 88 VKSEIDVPVSVAYNAYSDRESIPRWMPF-----ISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWR 162 (271)
Q Consensus 88 vSi~I~AP~e~VfdlvsD~en~P~wmpg-----v~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~ 162 (271)
.+..|++|+++||+.++|++.+.+|+.. +..++.--..++.....+... .|.... ...++++.+|+++|.++
T Consensus 4 i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~-~g~~~~--~~g~~~~~~p~~~l~~t 80 (143)
T cd08900 4 LERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPK-GGPEIT--VEARYHDIVPDERIVYT 80 (143)
T ss_pred EEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECC-CCCEEe--eeEEEEEecCCceEEEE
Confidence 5578999999999999999999999864 122221111112334444322 343334 34899999999998655
Q ss_pred E--ecC----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 163 S--LEG----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 163 s--veG----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
- ..+ .....+++|+|.+ ++|++++.-.+-........ .....--...|++|++++|.
T Consensus 81 ~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~~~-----~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 81 YTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFLDGDDDP-----AGREQGTAALLDNLAAELER 143 (143)
T ss_pred EeeccCCccccceEEEEEEEECC-CCEEEEEEEEEecccccchh-----hhHHHHHHHHHHHHHHHHhC
Confidence 3 322 2346789999976 68999998765321111111 12345666778888888863
No 38
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.76 E-value=2.1e-07 Score=73.50 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=80.1
Q ss_pred cCCHHHHHHHHhCCCCchhc-ccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEecC-----
Q 024198 93 DVPVSVAYNAYSDRESIPRW-MPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLEG----- 166 (271)
Q Consensus 93 ~AP~e~VfdlvsD~en~P~w-mpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sveG----- 166 (271)
+||+++||+.++|++.+.+| ......+.. . + +..+++.. ..|.... +..++++.+|+++|.|+...+
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~~~--~-~-Gg~~~~~~-~~g~~~~--~~~~v~~~~p~~~i~~~~~~~~~~~~ 73 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAEMDF--R-P-GGSFRFMD-PDGGEFG--FDGTVLEVEPPERIVFTWRMPDDPDG 73 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEEEEC--S-T-TEEEEEEE-TTSEEEE--EEEEEEEEETTTEEEEEEEEETSSSC
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCcceeee--e-c-CCEEEEEe-cCCCCce--eeEEEEEEeCCEEEEEEEEccCCCCC
Confidence 68999999999999999999 222222221 2 1 23444422 3354444 458899999999998885422
Q ss_pred CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 167 LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 167 ~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
.....++.|++ .+++|+|+++.+-..+..... .......+..|++||+++|
T Consensus 74 ~~~~v~~~~~~-~~~~T~l~~~~~~~~~~~~~~------~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 74 PESRVTFEFEE-EGGGTRLTLTHSGFPDDDEEE------EGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEEEEEHSHHHHH------HCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEE-cCCcEEEEEEEEcCCccHHHH------HHHHHHHHHHHHHHHHHhC
Confidence 35688899999 568999999984443322111 1167888888999999987
No 39
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.74 E-value=8.9e-07 Score=73.26 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=83.9
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCc-eEEEe--ecCCCEEEEEEEec-ccCeeEEEEEeEEEeeecCCeEEEEE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFIS-SVKIL--EDKPDLSKWSLKYK-AFGRDIEFSWLARNMQPIPNQKIHWR 162 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~-sVevl--~d~p~~s~w~l~i~-~~G~~~eftW~aeVTe~~P~~rI~w~ 162 (271)
+.+.++++|+++||+.|+|++.+.+|...-. .+... +-. .+..|++... ..|....+ ..++.+.+|+++|.+.
T Consensus 3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r-~GG~~~~~~~~~~g~~~~~--~g~~~ei~p~~~l~~t 79 (142)
T cd07826 3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIR-VGGSYRYVHRAPDGEEMGF--HGVYHEVTPPERIVQT 79 (142)
T ss_pred EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEecc-CCCEEEEEEECCCCCEecc--eEEEEEEcCCCEEEEE
Confidence 4678999999999999999999999976431 11111 111 1233444331 12333343 3889999999998765
Q ss_pred Ee-cC---CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 163 SL-EG---LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 163 sv-eG---~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
-. ++ .....+++|+|.+ ++|+++++..+ +.. ..........+..--...|++|+++++
T Consensus 80 ~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~~--~~~-~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 80 EEFEGLPDGVALETVTFTELG-GRTRLTATSRY--PSK-EARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred eEecCCCCCceEEEEEEEECC-CCEEEEEEEEe--CCH-HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 43 22 3457789999976 78999998554 332 111112233456677778888888875
No 40
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.53 E-value=4.3e-06 Score=69.42 Aligned_cols=131 Identities=14% Similarity=0.104 Sum_probs=79.2
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCC--------ceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFI--------SSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQK 158 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv--------~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~r 158 (271)
+.+++|+||+++||+.|+| .+.+|...- ..++ ++-.+ +-.|....+ .|. .+.+ .++.+.+|+++
T Consensus 3 ~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~-~d~~~-GG~~~~~~~-~g~--~~~~-g~v~~v~p~~~ 74 (149)
T cd08891 3 RKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVV-FEPRA-GGRWYEIGE-DGT--ECEW-GTVLAWEPPSR 74 (149)
T ss_pred EEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEE-EcccC-CcEEEEecC-CCc--Eece-EEEEEEcCCCE
Confidence 4789999999999999999 488886531 1122 22111 223443322 243 2222 78999999999
Q ss_pred EEEEEe--c-C-----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 159 IHWRSL--E-G-----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 159 I~w~sv--e-G-----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
|.++-. . + .....+++|+|.++++|+|+++-..-.+..-.............--...|++|++++|+
T Consensus 75 l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 75 LVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred EEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 866543 1 1 13578899999764789999987654322100000111112345566778999998874
No 41
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=2.6e-06 Score=71.58 Aligned_cols=107 Identities=21% Similarity=0.346 Sum_probs=83.3
Q ss_pred EEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecC-CCEEEEEEEecccCeeEEEEEeEEEee--ecCCeEEEEEEec
Q 024198 89 KSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDK-PDLSKWSLKYKAFGRDIEFSWLARNMQ--PIPNQKIHWRSLE 165 (271)
Q Consensus 89 Si~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~-p~~s~w~l~i~~~G~~~eftW~aeVTe--~~P~~rI~w~sve 165 (271)
..+|++|.|.||++.+.++++..-.|...-|...++. ..+++..+.....|....++|.+++++ ++++.++....+.
T Consensus 7 ~~~i~aP~E~VWafhsrpd~lq~LTppw~VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~~~FtDv~i~ 86 (153)
T COG4276 7 RTTITAPHEMVWAFHSRPDALQRLTPPWIVVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNGSRFTDVCIT 86 (153)
T ss_pred eeEecCCHHHHhhhhcCccHHHhcCCCcEEeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCcceeeeeeec
Confidence 3578999999999999999998888777644333311 123555555544565556789999999 8999999999999
Q ss_pred C-CC---ceEEEEEEECCCCceEEEEEEEEEeCcc
Q 024198 166 G-LP---NRGAVRFFPKGPSSCIVELTVSYEVPQL 196 (271)
Q Consensus 166 G-~~---~~g~~~Fep~gdggTrVtl~ieye~pg~ 196 (271)
| .+ =+.+..|.+.+ ++|.+.-++.|++|++
T Consensus 87 gPfp~~~WrHtH~F~~eg-g~TvliD~Vsye~p~g 120 (153)
T COG4276 87 GPFPALNWRHTHNFVDEG-GGTVLIDSVSYELPAG 120 (153)
T ss_pred CCccceeeEEEeeeecCC-CcEEEEeeEEeeccCc
Confidence 9 33 37788999865 7899999999999987
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.51 E-value=3.7e-06 Score=68.31 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=77.5
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEE--EEEe
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIH--WRSL 164 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~--w~sv 164 (271)
+.+..|+||+++||+.++|++.+.+|.....+++...+ ..|.+.. | .+. .++.+.+|++++. |...
T Consensus 3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~G----G~~~~~~---g---~~~--g~~~~i~p~~~l~~~w~~~ 70 (126)
T cd08892 3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAKVG----GKFSLFG---G---NIT--GEFVELVPGKKIVQKWRFK 70 (126)
T ss_pred EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCCCC----CEEEEeC---C---ceE--EEEEEEcCCCEEEEEEEcC
Confidence 46789999999999999999999999765444433222 2344321 3 223 6788999999986 4433
Q ss_pred cC---CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHH-HHHHHHHHHHh
Q 024198 165 EG---LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLD-VDWIALQHLLK 224 (271)
Q Consensus 165 eG---~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr-~~L~aFK~~aE 224 (271)
+. .....+++|++.+ ++|+|+++-+.-++.... ..+.--. ..+++||+.+|
T Consensus 71 ~~~~~~~s~v~~~l~~~~-~gT~ltl~~~g~~~~~~~--------~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 71 SWPEGHYSTVTLTFTEKD-DETELKLTQTGVPAGEEE--------RTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCCCCCcEEEEEEEEECC-CCEEEEEEEECCCCchHH--------HHHhhHHHHHHHHHHHHhC
Confidence 21 3467889999974 789999997655443111 1223333 46778887765
No 43
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.2e-05 Score=67.76 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=80.6
Q ss_pred ceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCce--EEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEE
Q 024198 84 QDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISS--VKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHW 161 (271)
Q Consensus 84 ~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~s--Vevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w 161 (271)
.+-+.+.+|++|+++||+.|+|++.+++|.. -.. .....++..+.+|....+ .. +.+..++.+.+|+++|.+
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g---~~--~~~~~~~~~v~p~~rIv~ 81 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDG---PV--HSFEGEYLEVVPPERIVF 81 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCC---Ce--eecceEEEEEcCCcEEEE
Confidence 4456788999999999999999999999987 321 222222212344444332 21 335589999999998775
Q ss_pred EEe--cC----CCceEEEEEEECCCCc-eEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 162 RSL--EG----LPNRGAVRFFPKGPSS-CIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 162 ~sv--eG----~~~~g~~~Fep~gdgg-TrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
+-. ++ .....+++|.|..+++ |+......+. .+.......+..+..-....+++|++.++
T Consensus 82 tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 82 TWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGGG---FLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeecc---ccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 554 33 2578889999976543 3333332221 12111111222346667777888888776
No 44
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.15 E-value=4.3e-05 Score=67.67 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=93.2
Q ss_pred eeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC---CEEEEEEEecccCeeEEEEEeEEEee-ecCCeE--
Q 024198 85 DCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP---DLSKWSLKYKAFGRDIEFSWLARNMQ-PIPNQK-- 158 (271)
Q Consensus 85 ~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p---~~s~w~l~i~~~G~~~eftW~aeVTe-~~P~~r-- 158 (271)
.......|++|++.+.+++.|.+.+|+|.|.|.+.+.+.... ....++++.+.....+++.-.+...+ .+.+..
T Consensus 47 ~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~ 126 (215)
T cd08877 47 SLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIV 126 (215)
T ss_pred EEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEE
Confidence 344667899999999999999999999999999998885532 12445555543122334431111111 212322
Q ss_pred EEEEEec------------------C----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHH
Q 024198 159 IHWRSLE------------------G----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDW 216 (271)
Q Consensus 159 I~w~sve------------------G----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L 216 (271)
+...+++ | ....+.|.|+|.+++.|+|++.+..+|.|.+.+. .+++-+.+.+....+
T Consensus 127 i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~-~liN~~~k~~~~~~~ 205 (215)
T cd08877 127 ILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK-SLLNFVARKFAGLLF 205 (215)
T ss_pred EEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH-HHHHHHHHHHHHHHH
Confidence 3334332 2 1236789999999899999999999976652321 345557788888999
Q ss_pred HHHHHHHhh
Q 024198 217 IALQHLLKA 225 (271)
Q Consensus 217 ~aFK~~aE~ 225 (271)
++|++.++.
T Consensus 206 ~~l~k~~~~ 214 (215)
T cd08877 206 EKIQKAAKN 214 (215)
T ss_pred HHHHHHHhc
Confidence 999998875
No 45
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=98.14 E-value=2.1e-05 Score=64.82 Aligned_cols=88 Identities=20% Similarity=0.198 Sum_probs=59.9
Q ss_pred EcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEe--c---C
Q 024198 92 IDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSL--E---G 166 (271)
Q Consensus 92 I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sv--e---G 166 (271)
++||+++||+.|+|++.+.+|..+. ..+ ++-. .+..|++.. | .++ .++.+.+|+++|.++-. + +
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~-~~~-~d~~-~GG~f~~~~---~---~~~--G~~~ev~pp~rlv~tw~~~~~~~~ 69 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGS-PAE-MDAK-VGGKFSLFN---G---SVE--GEFTELEKPKKIVQKWRFRDWEED 69 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCC-Ccc-ccCC-cCCEEEEec---C---ceE--EEEEEEcCCCEEEEEEecCCCCCC
Confidence 4799999999999999999995331 111 1211 123344432 2 223 68889999998775543 2 1
Q ss_pred CCceEEEEEEECCCCceEEEEEEE
Q 024198 167 LPNRGAVRFFPKGPSSCIVELTVS 190 (271)
Q Consensus 167 ~~~~g~~~Fep~gdggTrVtl~ie 190 (271)
.....+++|+|.++++|+++++..
T Consensus 70 ~~s~vt~~~~~~~~g~T~lt~~~~ 93 (132)
T PTZ00220 70 VYSKVTIEFRAVEEDHTELKLTQT 93 (132)
T ss_pred CceEEEEEEEeCCCCcEEEEEEEe
Confidence 346788999997667899999976
No 46
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.12 E-value=0.00012 Score=65.45 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=80.1
Q ss_pred cccceeeeccCCCCCcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC-C--EEEEEEEecccC-
Q 024198 64 KRSSSIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP-D--LSKWSLKYKAFG- 139 (271)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p-~--~s~w~l~i~~~G- 139 (271)
+.+-.+|+..-.. ...+ .....+|++|+++||+++.|.++.++|.+.+++.++++.-. + ...++...+...
T Consensus 30 ~~gI~Vy~k~~~~-~~~~----~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~ 104 (205)
T cd08874 30 EKDVVIYYKVFNG-TYHG----FLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLL 104 (205)
T ss_pred CCCEEEEEecCCC-Ccce----EEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCC
Confidence 4445666653221 2222 12455889999999999999999999999999999986432 1 244444433212
Q ss_pred -eeEEEEEeEEEeee-cCCe-EEEEEEecC-------------CCceEEEEEEEC---CCCceEEEEEEEEEeCcc
Q 024198 140 -RDIEFSWLARNMQP-IPNQ-KIHWRSLEG-------------LPNRGAVRFFPK---GPSSCIVELTVSYEVPQL 196 (271)
Q Consensus 140 -~~~eftW~aeVTe~-~P~~-rI~w~sveG-------------~~~~g~~~Fep~---gdggTrVtl~ieye~pg~ 196 (271)
..++|. ...+.. ..+. .+..++++- ....+.|.++|. +++.|+|++.+..+|.|+
T Consensus 105 ~~~RDfV--~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg 178 (205)
T cd08874 105 KQPRDFC--CLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGP 178 (205)
T ss_pred CCCCeEE--EEEEEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCC
Confidence 445664 222222 2222 344444432 224678999999 777899999999997644
No 47
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=98.11 E-value=0.00014 Score=61.93 Aligned_cols=112 Identities=21% Similarity=0.328 Sum_probs=78.1
Q ss_pred ceeEEEEEEcCCHHHHHHHHh-CCCCchhcccC-CceEEEeecCC--CEEEEEEEecccCeeEEEEEeEEEeeecCC-eE
Q 024198 84 QDCTVKSEIDVPVSVAYNAYS-DRESIPRWMPF-ISSVKILEDKP--DLSKWSLKYKAFGRDIEFSWLARNMQPIPN-QK 158 (271)
Q Consensus 84 ~~~tvSi~I~AP~e~Vfdlvs-D~en~P~wmpg-v~sVevl~d~p--~~s~w~l~i~~~G~~~eftW~aeVTe~~P~-~r 158 (271)
.+.+..+.+.+|++++|+.+. ....+|+-+|+ +.+++++++++ .++.-.+++..+|....+ ..++...+.. +.
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~--Kekve~~D~~~~~ 81 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYV--KEKVEAIDEENKT 81 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEE--EEEEEEEETTTTE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCccee--EEEEEeecCCCcE
Confidence 345678899999999999999 45558888876 56788886532 224434444333533232 3677776555 89
Q ss_pred EEEEEecC--C----CceEEEEEEECCCCceEEEEEEEEEeCcch
Q 024198 159 IHWRSLEG--L----PNRGAVRFFPKGPSSCIVELTVSYEVPQLL 197 (271)
Q Consensus 159 I~w~sveG--~----~~~g~~~Fep~gdggTrVtl~ieye~pg~L 197 (271)
+.+..++| + .......+.|.++++|.+.++++|++.+.-
T Consensus 82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~ 126 (151)
T PF00407_consen 82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGED 126 (151)
T ss_dssp EEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTS
T ss_pred EEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCC
Confidence 99999998 2 346677777888888999999999986643
No 48
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.06 E-value=0.00028 Score=62.92 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=85.3
Q ss_pred EEEEEEcCCHHHHH-HHHhCCCCchhcccCCceEEEeecCC--CEEEEEEEeccc---CeeEEEEEeEEEeeecCCeEEE
Q 024198 87 TVKSEIDVPVSVAY-NAYSDRESIPRWMPFISSVKILEDKP--DLSKWSLKYKAF---GRDIEFSWLARNMQPIPNQKIH 160 (271)
Q Consensus 87 tvSi~I~AP~e~Vf-dlvsD~en~P~wmpgv~sVevl~d~p--~~s~w~l~i~~~---G~~~eftW~aeVTe~~P~~rI~ 160 (271)
.....|++|++++| +++.|++++++|.+.+.++++++... ....+.+..+.. -..++|.-. +-.....+..+.
T Consensus 52 k~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~-r~~~~~~~~~i~ 130 (209)
T cd08906 52 ILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNV-RRIERRRDRYVS 130 (209)
T ss_pred EEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEE-EEEEecCCcEEE
Confidence 47788999999998 68999999999999999998886532 122334443321 123444311 111222222222
Q ss_pred E-EEe--------cC----C-CceEEEEEEE-CCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 161 W-RSL--------EG----L-PNRGAVRFFP-KGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 161 w-~sv--------eG----~-~~~g~~~Fep-~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
. .++ +| . ...|.|.+.+ .++++|++++.+..+|.|.+-. -+++..+....-..+++||++++.
T Consensus 131 ~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~--~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 131 AGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPR--YLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 111 11 1 2345565554 4667899999999997665533 344556677777889999999875
No 49
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.05 E-value=0.00012 Score=65.01 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=86.5
Q ss_pred EEEEEEcCCHHHHH-HHHhCCCCchhcccCCceEEEeecCC--CEEEEEEEeccc-C--eeEEEEEeEEEeeecCCeEEE
Q 024198 87 TVKSEIDVPVSVAY-NAYSDRESIPRWMPFISSVKILEDKP--DLSKWSLKYKAF-G--RDIEFSWLARNMQPIPNQKIH 160 (271)
Q Consensus 87 tvSi~I~AP~e~Vf-dlvsD~en~P~wmpgv~sVevl~d~p--~~s~w~l~i~~~-G--~~~eftW~aeVTe~~P~~rI~ 160 (271)
.....|++|+++++ .++.|.+++++|.+.|.++++++... ....+....+.. + ..++|.- .+......+..+.
T Consensus 52 k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~-~~~~~~~~~~~~~ 130 (209)
T cd08905 52 RLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVS-VRCAKRRGSTCVL 130 (209)
T ss_pred EEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEE-EEEEEEcCCcEEE
Confidence 37789999999999 88889999999999999988875432 112222322210 1 1234431 1222222222221
Q ss_pred -EEEe--------cC----CCceEEEEEEECCC--CceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 161 -WRSL--------EG----LPNRGAVRFFPKGP--SSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 161 -w~sv--------eG----~~~~g~~~Fep~gd--ggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
-.+. +| ....|.|.|+|.++ +.|+|++.+..+|.|.+-. .++..++.+..-..+++||+++++
T Consensus 131 ~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~--~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 131 AGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPK--SIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCCH--HHHHHHhHHhHHHHHHHHHHHHhc
Confidence 1111 11 12467899999965 7899999999997666543 334556667777889999998874
No 50
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=98.05 E-value=0.00046 Score=61.18 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=110.1
Q ss_pred CCCCCccccccccCeecCCCcccccceeeeccCCCCCcccccceeEEEEEE-cCCHHHHHHHHhCCCCchhcccCCceEE
Q 024198 42 NLKPPSLRRQLLFGVPIPHGSFKRSSSIFTPSRHFFSPVMEWQDCTVKSEI-DVPVSVAYNAYSDRESIPRWMPFISSVK 120 (271)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvSi~I-~AP~e~VfdlvsD~en~P~wmpgv~sVe 120 (271)
+-+++...|+...+-..-+ .+.+..+|+.-.. -+++.+ ..+..++ ++|++++++++.|.+..++|.+.+.+.+
T Consensus 9 ~~~~~~~~~~~~~~W~l~~--~~~~i~Vy~r~~~-~s~~~~---~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~ 82 (207)
T cd08911 9 NADTSSINNQEPDGWEPFI--EKKDMLVWRREHP-GTGLYE---YKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELE 82 (207)
T ss_pred CcCccccccccCCCcEEEE--EcCceEEEEeccC-CCCcEE---EEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEE
Confidence 3466677777665543332 2566788887666 366553 3343445 9999999999999999999999999999
Q ss_pred EeecCC----CEEEEEEEecccCeeEEEEEeEEEeeecCC-eE--EEEEEec--------C----CCceEEEEEEECC--
Q 024198 121 ILEDKP----DLSKWSLKYKAFGRDIEFSWLARNMQPIPN-QK--IHWRSLE--------G----LPNRGAVRFFPKG-- 179 (271)
Q Consensus 121 vl~d~p----~~s~w~l~i~~~G~~~eftW~aeVTe~~P~-~r--I~w~sve--------G----~~~~g~~~Fep~g-- 179 (271)
+++... ....|.++.+..-..++|.-..+. ...++ .. +...+++ | ....+.|.++|.+
T Consensus 83 ~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~-~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~ 161 (207)
T cd08911 83 VVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRY-IIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF 161 (207)
T ss_pred EEEccCCCCCEEEEEEEECCCCCCCccEEEEEEE-EEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC
Confidence 997531 236777776632223344422222 22222 22 3344443 2 1247889999983
Q ss_pred -CCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 180 -PSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 180 -dggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
+++|++++...-+ |||.... .+++.+.++..-+.|++|++-+.
T Consensus 162 ~~~~~~~~~~~~~d-PgG~IP~-~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 162 DEPGFEFVLTYFDN-PGVNIPS-YITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred CCCCeEEEEEEEeC-CCCccCH-HHHHHHHHhhccHHHHHHHHHHh
Confidence 5689999887555 5553321 33455667777778888877653
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.02 E-value=0.00055 Score=60.57 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=96.0
Q ss_pred ceeeeccCCCCCcccccceeEEEEEE-cCCHHHHHHHHhCCCCchhcccCCceEEEeecCC----CEEEEEEEecccCee
Q 024198 67 SSIFTPSRHFFSPVMEWQDCTVKSEI-DVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP----DLSKWSLKYKAFGRD 141 (271)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~tvSi~I-~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p----~~s~w~l~i~~~G~~ 141 (271)
..+|+.-..+ +++. +..+..++ ++|++++++++.|.+..++|...+.+.++++..+ ....|..+.+..-..
T Consensus 37 i~vy~r~~~~-s~~~---~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~ 112 (209)
T cd08870 37 YQAWRRKPKG-TGLY---EYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSD 112 (209)
T ss_pred EEEEecccCC-CCce---EEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCC
Confidence 6777765442 3443 34455677 6799999999999999999999999999986543 236777777642334
Q ss_pred EEEEEeEEEeeecCCe-EEEEEEec-------C----CCceEEEEEEEC--CCCceEEEEEEEEEeCcchHHHHHHhhhh
Q 024198 142 IEFSWLARNMQPIPNQ-KIHWRSLE-------G----LPNRGAVRFFPK--GPSSCIVELTVSYEVPQLLVPLHQHLNLF 207 (271)
Q Consensus 142 ~eftW~aeVTe~~P~~-rI~w~sve-------G----~~~~g~~~Fep~--gdggTrVtl~ieye~pg~L~~~a~ll~~~ 207 (271)
++|.-..+..+...+. .+...+++ | ....+.|.++|. ++++|+++++..-+|.|.+-. -+++.+
T Consensus 113 RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~--wlvN~~ 190 (209)
T cd08870 113 REYVIARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPR--ELAKLA 190 (209)
T ss_pred ceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCH--HHHHHH
Confidence 5654211121211221 23333332 3 124778999999 677899999987775444322 233445
Q ss_pred HHHHHHHHHHHHHHHH
Q 024198 208 LKPYLDVDWIALQHLL 223 (271)
Q Consensus 208 ~~r~vr~~L~aFK~~a 223 (271)
..+.+-..|++|++.+
T Consensus 191 ~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 191 VKRGMPGFLKKLENAL 206 (209)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 5666667777776655
No 52
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.96 E-value=0.00029 Score=64.34 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=74.0
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC--CE-EEEEEEecccCeeEEEEEeEEEeee--cCC---eE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP--DL-SKWSLKYKAFGRDIEFSWLARNMQP--IPN---QK 158 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p--~~-s~w~l~i~~~G~~~eftW~aeVTe~--~P~---~r 158 (271)
.+...|++|++++|+++.|.++.++|.+.+.+.++++.-. .. ..+++..+..-...+|. ....-. .++ -.
T Consensus 80 k~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV--~~~s~~~~~~~~~~~~ 157 (235)
T cd08873 80 CVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFV--LLVSRRKPATDGDPYK 157 (235)
T ss_pred EEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEE--EEEEEEeccCCCCeEE
Confidence 3556799999999999999999999999999999987422 12 34444442112334554 222211 122 23
Q ss_pred EEEEEec--------C----CCceEEEEEEECCCCceEEEEEEEEEeCcchH
Q 024198 159 IHWRSLE--------G----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLV 198 (271)
Q Consensus 159 I~w~sve--------G----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~ 198 (271)
|..+++. | ....|.|.+.|.++++|+|++.+..+ ||.+.
T Consensus 158 I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d-Pg~~~ 208 (235)
T cd08873 158 VAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN-PKLLS 208 (235)
T ss_pred EEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC-CCccc
Confidence 5566655 2 23578899999988899999999888 56543
No 53
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=97.95 E-value=0.0008 Score=59.28 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=93.9
Q ss_pred cceeeeccCCCCCcccccceeEEEEEEcCCHHHHHH-HHhCCCCchhcccCCceEEEeecCC--CEEEEEEEeccc-C--
Q 024198 66 SSSIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYN-AYSDRESIPRWMPFISSVKILEDKP--DLSKWSLKYKAF-G-- 139 (271)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~Vfd-lvsD~en~P~wmpgv~sVevl~d~p--~~s~w~l~i~~~-G-- 139 (271)
+.-+|.....+...+ ..+...|++|+++||+ ++.|.+..++|.+.+.++++++.-. ....+....+.. +
T Consensus 35 ~i~i~~r~~~~~~~~-----~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~v 109 (208)
T cd08868 35 GDVVYSRNVPGVGKV-----FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLV 109 (208)
T ss_pred CCEEEEEEcCCCceE-----EEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcc
Confidence 556666544421112 3366789999999986 6789999999999999998886432 223343332111 1
Q ss_pred eeEEEEEeEEEeeecCCe-EEEEEEec--------C----CCceEEEEEEECCC--CceEEEEEEEEEeCcchHHHHHHh
Q 024198 140 RDIEFSWLARNMQPIPNQ-KIHWRSLE--------G----LPNRGAVRFFPKGP--SSCIVELTVSYEVPQLLVPLHQHL 204 (271)
Q Consensus 140 ~~~eftW~aeVTe~~P~~-rI~w~sve--------G----~~~~g~~~Fep~gd--ggTrVtl~ieye~pg~L~~~a~ll 204 (271)
..++|.- .+.....++. .+...+++ | ....+.|.|+|.++ ++|.|++.+..+|.|.+-. -++
T Consensus 110 s~RDfV~-~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~--~lv 186 (208)
T cd08868 110 SPRDFVS-LRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQ--YLV 186 (208)
T ss_pred cccceEE-EEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcc--eee
Confidence 1234431 1222223332 23344433 2 12468899999864 5799999999997665432 234
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 024198 205 NLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 205 ~~~~~r~vr~~L~aFK~~aE~ 225 (271)
+.......-..+++|++.+++
T Consensus 187 N~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 187 DQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred ehhhHHHHHHHHHHHHHHHhh
Confidence 445677777888899988875
No 54
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.94 E-value=0.00053 Score=61.03 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=92.0
Q ss_pred cccceeeeccCCCCCcccccceeEEEEEE-cCCHHHHHHHHhCCCCchhcccCCceEEEeecCC---CEEEEEEEecccC
Q 024198 64 KRSSSIFTPSRHFFSPVMEWQDCTVKSEI-DVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP---DLSKWSLKYKAFG 139 (271)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~tvSi~I-~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p---~~s~w~l~i~~~G 139 (271)
+.+..+|+.-.. -+++. ...+..+| ++|++++++++.|.+..++|.+.+.+.++++.-. ....+.++.+..-
T Consensus 31 ~~gi~iy~r~~~-~~~~~---~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pv 106 (222)
T cd08871 31 KNNVKVWTKNPE-NSSIK---MIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPL 106 (222)
T ss_pred CCCeEEEEeeCC-CCceE---EEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCC
Confidence 445566664433 13332 22344555 7999999999999999999999999988875432 2345555544322
Q ss_pred eeEEEEEeEEEeeecCCeE-EEEEEe--------cC----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhh
Q 024198 140 RDIEFSWLARNMQPIPNQK-IHWRSL--------EG----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNL 206 (271)
Q Consensus 140 ~~~eftW~aeVTe~~P~~r-I~w~sv--------eG----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~ 206 (271)
..++|.- .+.+...++.. +.-.++ +| ....+.|.++|.++++|+|++....+|.|.+-. -+++.
T Consensus 107 s~RDfV~-~r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~IP~--~lvN~ 183 (222)
T cd08871 107 KNRDFVN-LRSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSLPK--WVVNK 183 (222)
T ss_pred CCCeEEE-EEEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCcCH--HHHHH
Confidence 3345542 22223333332 222222 12 113567899999888999999998997665432 22333
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 024198 207 FLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 207 ~~~r~vr~~L~aFK~~aE~ 225 (271)
+...+.-..|++|++.++.
T Consensus 184 ~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 184 ATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 4455555666666665554
No 55
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=97.79 E-value=0.0039 Score=52.34 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=88.6
Q ss_pred ccceeeeccCCCCCcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCC--E-EEEEEEecccCee
Q 024198 65 RSSSIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPD--L-SKWSLKYKAFGRD 141 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~--~-s~w~l~i~~~G~~ 141 (271)
.+.-+|+...+ .+++ .......+|++|+++|++++.|+++.++|-+.+.+.++++.-.. . ....++.+..-..
T Consensus 24 ~~v~vy~~~~~-~~~~---~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~ 99 (193)
T cd00177 24 DGVKIYTKPYE-DSGL---KLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSP 99 (193)
T ss_pred CcEEEEEecCC-CCCc---eeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCC
Confidence 34556665444 3322 23346778999999999999999999999999999999976432 2 2333333321122
Q ss_pred EEEEEeEEEeeecC-Ce-EEEEEEecC---------C---CceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhh
Q 024198 142 IEFSWLARNMQPIP-NQ-KIHWRSLEG---------L---PNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLF 207 (271)
Q Consensus 142 ~eftW~aeVTe~~P-~~-rI~w~sveG---------~---~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~ 207 (271)
++|.. .+.+...+ +. .+...+++. . ...+.|.|+|.++++|+|++....++.|.+-. .++...
T Consensus 100 Rdfv~-~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP~--~~~~~~ 176 (193)
T cd00177 100 RDFVY-LRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIPK--SLVNSA 176 (193)
T ss_pred ccEEE-EEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCccH--HHHHhh
Confidence 34432 22222233 32 233444422 1 12466899999888999999999997665432 222333
Q ss_pred HHHHHHHHHHHHH
Q 024198 208 LKPYLDVDWIALQ 220 (271)
Q Consensus 208 ~~r~vr~~L~aFK 220 (271)
...+....++.++
T Consensus 177 ~~~~~~~~~~~~~ 189 (193)
T cd00177 177 AKKQLASFLKDLR 189 (193)
T ss_pred hhhccHHHHHHHH
Confidence 3444444444443
No 56
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.75 E-value=0.0013 Score=58.49 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=94.5
Q ss_pred cccceeeeccCCCCCcccccceeEEEEEEc-CCHHHHHHHHhCCCCchhcccCCceEEEe-ecCCCEEEEEEEecccCee
Q 024198 64 KRSSSIFTPSRHFFSPVMEWQDCTVKSEID-VPVSVAYNAYSDRESIPRWMPFISSVKIL-EDKPDLSKWSLKYKAFGRD 141 (271)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~tvSi~I~-AP~e~VfdlvsD~en~P~wmpgv~sVevl-~d~p~~s~w~l~i~~~G~~ 141 (271)
+.+..+|+.-.. -+++. +..+..+++ ++++++++++.|.+..++|.+.+.++... +++.....|.++.+..-..
T Consensus 33 ~~~i~Vy~r~~~-~s~~~---~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~~~i~y~~~k~PwPvs~ 108 (207)
T cd08910 33 SSGISIYRLLDE-QSGLY---EYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDGETVIYWEVKYPFPLSN 108 (207)
T ss_pred cCCeEEEEeccC-CCCcE---EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCCCEEEEEEEEcCCCCCC
Confidence 455677775333 24444 344566777 79999999999999999999999886332 2222346777776532223
Q ss_pred EEEEEeEEEeeec-CCeEE---EEEEe--------cC----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhh
Q 024198 142 IEFSWLARNMQPI-PNQKI---HWRSL--------EG----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLN 205 (271)
Q Consensus 142 ~eftW~aeVTe~~-P~~rI---~w~sv--------eG----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~ 205 (271)
++|.......+.. ++..+ ..+++ +| ....+.|.|+|.++++|++++...-+|.|.+-. -+++
T Consensus 109 RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~IP~--wlvN 186 (207)
T cd08910 109 RDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGMIPS--WLIN 186 (207)
T ss_pred ceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCcchH--HHHH
Confidence 4443111111111 12211 11222 12 125788999998878899999998885443322 3345
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 024198 206 LFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 206 ~~~~r~vr~~L~aFK~~aE 224 (271)
.+.++.....|++|++-+.
T Consensus 187 ~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 187 WAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred HHHHHhhHHHHHHHHHHHh
Confidence 5667777788888877653
No 57
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=97.74 E-value=0.0028 Score=54.88 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=86.0
Q ss_pred EEEEEEcCCHHH-HHHHHhCCCCchhcccCCceEEEeecCC---CEEEEEEEecc-cCeeEEEEEeEEEeeecCCe-EEE
Q 024198 87 TVKSEIDVPVSV-AYNAYSDRESIPRWMPFISSVKILEDKP---DLSKWSLKYKA-FGRDIEFSWLARNMQPIPNQ-KIH 160 (271)
Q Consensus 87 tvSi~I~AP~e~-VfdlvsD~en~P~wmpgv~sVevl~d~p---~~s~w~l~i~~-~G~~~eftW~aeVTe~~P~~-rI~ 160 (271)
.....|++++++ +-+++.|.+..++|.+.+.++++++.-. ....+..+.+. .-..++|.-.......+.+. .+.
T Consensus 48 k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~ 127 (206)
T smart00234 48 RAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVV 127 (206)
T ss_pred EEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEE
Confidence 366788889986 6689999999999999999988875432 23444444432 11224553222222222332 233
Q ss_pred EEEecC------------CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 161 WRSLEG------------LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 161 w~sveG------------~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
.++++. ....+.|.++|.+++.|+|++....+|.|.+-. .+++.+.+...-..++++++.++.
T Consensus 128 ~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~--~lvn~~~~~~~~~~~~~~~~~~~~ 202 (206)
T smart00234 128 DVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPH--WLVRSLIKSGLAEFAKTWVATLQK 202 (206)
T ss_pred EEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccc--eeehhhhhhhHHHHHHHHHHHHHH
Confidence 444432 124677999999888899999999997665422 233445566666666767666543
No 58
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=97.65 E-value=0.0013 Score=57.78 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=79.0
Q ss_pred EEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC---CEEEEEEEecccCeeEEEEEeEEEeee-cCCe--EEEE
Q 024198 88 VKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP---DLSKWSLKYKAFGRDIEFSWLARNMQP-IPNQ--KIHW 161 (271)
Q Consensus 88 vSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p---~~s~w~l~i~~~G~~~eftW~aeVTe~-~P~~--rI~w 161 (271)
++.+|++|+++|++.+-|.. ++|.+.+.+.++++.-. ......+..+......+|.-. +.... .++. .+..
T Consensus 48 ~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~-r~~~~~~~~g~~~i~~ 124 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVL-RTWRTDLPKGACVLVE 124 (197)
T ss_pred EEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEE-EEEEecCCCCcEEEEE
Confidence 67789999999999888864 99999999998886532 223444443322234555311 12221 1222 3455
Q ss_pred EEec-------C----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHH
Q 024198 162 RSLE-------G----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQH 221 (271)
Q Consensus 162 ~sve-------G----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~ 221 (271)
++++ | ....+.|.++|.++++|+|++.+..+|.|.+-. -+.......+-+.|++|+.
T Consensus 125 ~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP~---wl~N~~~~~~~~~~~~l~~ 192 (197)
T cd08869 125 TSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSPE---WYNKVYGHLCARELLRIRD 192 (197)
T ss_pred ECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCCc---eeecchHhHHHHHHHHHHh
Confidence 5552 3 224688999999888999999999997665432 1122333444455555554
No 59
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=97.60 E-value=0.0052 Score=54.56 Aligned_cols=135 Identities=10% Similarity=0.094 Sum_probs=81.1
Q ss_pred EEEEEcCCHHHHHHHHhCCCCc--hhcccCCceEEEeecCC-CE--EEEEEEecccC--eeEEEEEeEEEeeecCCeEEE
Q 024198 88 VKSEIDVPVSVAYNAYSDRESI--PRWMPFISSVKILEDKP-DL--SKWSLKYKAFG--RDIEFSWLARNMQPIPNQKIH 160 (271)
Q Consensus 88 vSi~I~AP~e~VfdlvsD~en~--P~wmpgv~sVevl~d~p-~~--s~w~l~i~~~G--~~~eftW~aeVTe~~P~~rI~ 160 (271)
...+|+++++++|+++.|.++. ++|.+.|.++++++.-. +. .+....-+..+ ..++|.- .+..+...+..+.
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~~vs~RDfV~-~~~~~~~~d~~i~ 128 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMKIISPRDFVD-VVLVKRYEDGTIS 128 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCCCcCCCceEE-EEEEEecCCceEE
Confidence 7778999999999999999887 99999999999886532 22 22212111011 1234431 1222222333333
Q ss_pred E--EEecC---C----------C-ceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 024198 161 W--RSLEG---L----------P-NRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 161 w--~sveG---~----------~-~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE 224 (271)
. .+++- + . ..+.|...|.++++|+|++.+..+|.|.+-. .++..++.+.....+.+|++.+.
T Consensus 129 i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP~--~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 129 SNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLPQ--TVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcCH--HHHHHHhhHHHHHHHHHHHHHHh
Confidence 2 22221 0 0 2344544444567899999999998766543 33444555666677888888875
Q ss_pred h
Q 024198 225 A 225 (271)
Q Consensus 225 ~ 225 (271)
+
T Consensus 207 ~ 207 (208)
T cd08903 207 A 207 (208)
T ss_pred h
Confidence 4
No 60
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=97.47 E-value=0.015 Score=51.14 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=82.5
Q ss_pred EEEEEcCCHHHHHHHHhC--CCCchhcccCCceEEEeecCCCEEEEEE-Eecc--cC--eeEEEEEeEEEee-ecCCe-E
Q 024198 88 VKSEIDVPVSVAYNAYSD--RESIPRWMPFISSVKILEDKPDLSKWSL-KYKA--FG--RDIEFSWLARNMQ-PIPNQ-K 158 (271)
Q Consensus 88 vSi~I~AP~e~VfdlvsD--~en~P~wmpgv~sVevl~d~p~~s~w~l-~i~~--~G--~~~eftW~aeVTe-~~P~~-r 158 (271)
...+|++++++|++++.| .+..++|.+.+.+.++++.-.....+.. ..+. .+ ..++|.- .+.+. .+.+. .
T Consensus 50 ~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~-~~~~~~~~~~~~~ 128 (206)
T cd08867 50 AEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVD-LVYVKRYEDNQWS 128 (206)
T ss_pred EEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccCCcceEE-EEEEEEeCCCeEE
Confidence 778999999999999999 8899999999999988865322222221 2211 11 2234431 11112 22222 2
Q ss_pred EEEEEe--------cC----CCceEEEEEEECC--CCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 024198 159 IHWRSL--------EG----LPNRGAVRFFPKG--PSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLL 223 (271)
Q Consensus 159 I~w~sv--------eG----~~~~g~~~Fep~g--dggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~a 223 (271)
+...++ +| ....+.|.++|.+ +++|++++.+..+|.|.+-. .++...+.+.....+++|++++
T Consensus 129 i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP~--~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 129 SSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIPQ--SLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCcH--HHHHhhhhhhHHHHHHHHHHhc
Confidence 344555 23 1235668888874 46799999999998776543 3344455666666677777664
No 61
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.44 E-value=0.0024 Score=58.46 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=78.0
Q ss_pred cccceeeeccCCCCCcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC-CEEEEEEE-ecc-cCe
Q 024198 64 KRSSSIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP-DLSKWSLK-YKA-FGR 140 (271)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p-~~s~w~l~-i~~-~G~ 140 (271)
|.+.-+|+.- + +.+ +.-.+...+++|++++++++.|+++.++|.+.+.+.++++.-. ....+... .+. .-.
T Consensus 64 kdgIkVytr~-~--s~~---l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~vY~~~~pPw~Pvk 137 (236)
T cd08914 64 VEKIKIYTLE-E--HDV---LSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQIYHITCPIVNNDK 137 (236)
T ss_pred cCCEEEEEec-C--CCc---EEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcCEEEEecCCCCCCC
Confidence 4455566642 3 332 2344666889999999999999999999999999999886532 11123332 221 123
Q ss_pred eEEEEEeEEEee--ec-CC--eEEEEEEecC------------CC-ceEEEEEEECCCCceEEEEEEEEEeCcchH
Q 024198 141 DIEFSWLARNMQ--PI-PN--QKIHWRSLEG------------LP-NRGAVRFFPKGPSSCIVELTVSYEVPQLLV 198 (271)
Q Consensus 141 ~~eftW~aeVTe--~~-P~--~rI~w~sveG------------~~-~~g~~~Fep~gdggTrVtl~ieye~pg~L~ 198 (271)
..+|. ...+. .. .+ -.|..+++.. .. ..|. .+.|.++++|+|++.+..+| |.+-
T Consensus 138 ~RD~V--~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP-g~lp 209 (236)
T cd08914 138 PKDLV--VLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA-SILP 209 (236)
T ss_pred CceEE--EEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC-ccch
Confidence 35554 33332 12 12 1245555433 11 3455 89999888999999999886 6654
No 62
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.19 E-value=0.016 Score=53.07 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=68.1
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC-CEEEEEEEeccc---CeeEEEEEeEEEeeecCCe---EE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP-DLSKWSLKYKAF---GRDIEFSWLARNMQPIPNQ---KI 159 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p-~~s~w~l~i~~~---G~~~eftW~aeVTe~~P~~---rI 159 (271)
.+...|++|++++|+++.|+++.++|.+.+.+.++++... +...+....+.. -...+|.-.........+. .+
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii 163 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVI 163 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEE
Confidence 3556889999999999999999999999999999986532 222343332211 1334554111111111121 13
Q ss_pred EEEEe--cC----------CCceEEEEEEECCCCceEEEEEEEEEeCcc
Q 024198 160 HWRSL--EG----------LPNRGAVRFFPKGPSSCIVELTVSYEVPQL 196 (271)
Q Consensus 160 ~w~sv--eG----------~~~~g~~~Fep~gdggTrVtl~ieye~pg~ 196 (271)
..+++ .+ ....|.|.+.|.+++.|+|++...-+ ||.
T Consensus 164 ~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d-PG~ 211 (240)
T cd08913 164 ALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT-PGV 211 (240)
T ss_pred EEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC-Ccc
Confidence 33332 22 23478899999988899999987544 673
No 63
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=97.19 E-value=0.083 Score=45.46 Aligned_cols=134 Identities=15% Similarity=0.134 Sum_probs=86.3
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecC-C--CEEEEEEEecc--cCeeEEEEEeEEEeee-cCCe-EE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDK-P--DLSKWSLKYKA--FGRDIEFSWLARNMQP-IPNQ-KI 159 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~-p--~~s~w~l~i~~--~G~~~eftW~aeVTe~-~P~~-rI 159 (271)
.....|++++++++..+.|... +|.+.+.++++++.- + ....+..+.+. .-..++|.. .+.... ..+. .+
T Consensus 49 k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~-~~~~~~~~~~~~~i 125 (206)
T PF01852_consen 49 KAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVF-LRSWRKDEDGTYVI 125 (206)
T ss_dssp EEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEE-EEEEEECTTSEEEE
T ss_pred EEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEE-EEEEEEeccceEEE
Confidence 4678999999977777766666 999999999888652 2 23444455543 123456643 233333 3333 34
Q ss_pred EEEEecC---CC----------ceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 024198 160 HWRSLEG---LP----------NRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKA 225 (271)
Q Consensus 160 ~w~sveG---~~----------~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~ 225 (271)
..++++. .. ..+.|.|+|.+++.|+|++...-+|.|.+.. .+++.+.+.+.-..++.+++.++.
T Consensus 126 ~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~--~~~n~~~~~~~~~~~~~~~~~~~~ 202 (206)
T PF01852_consen 126 VSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPS--WLVNMVVKSQPPNFLKNLRKALKK 202 (206)
T ss_dssp EEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChH--HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556533 21 2577999999987899999999998776543 344556666676777777776664
No 64
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.18 E-value=0.01 Score=54.01 Aligned_cols=159 Identities=8% Similarity=0.027 Sum_probs=92.7
Q ss_pred cccceeeeccCCCCCcccccceeEEEEEEc-CCHHHHHHHHhCCCCchhcccCCceEEEeecCC---CEEEEEEEecccC
Q 024198 64 KRSSSIFTPSRHFFSPVMEWQDCTVKSEID-VPVSVAYNAYSDRESIPRWMPFISSVKILEDKP---DLSKWSLKYKAFG 139 (271)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~tvSi~I~-AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p---~~s~w~l~i~~~G 139 (271)
+.+.-+|+.-.. -+.+. .....+..+|+ +|++++++++.|.+..++|...+.+.++++... ....+.++.+..-
T Consensus 34 ~~gikVy~r~~~-~sg~~-~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPv 111 (235)
T cd08872 34 EGEMKVYRREVE-EDGVV-LDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPA 111 (235)
T ss_pred CCceEEEEEECC-CCCce-eeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCC
Confidence 445567775444 22221 11233666777 999999999999999999999999998875432 2234444433111
Q ss_pred eeEEEEEeEEEeeec-----------------------CC--eEEEEEEec----C---CCceEEEEEEECCCCceEEEE
Q 024198 140 RDIEFSWLARNMQPI-----------------------PN--QKIHWRSLE----G---LPNRGAVRFFPKGPSSCIVEL 187 (271)
Q Consensus 140 ~~~eftW~aeVTe~~-----------------------P~--~rI~w~sve----G---~~~~g~~~Fep~gdggTrVtl 187 (271)
..++|.........+ |+ ..+...... + ....|.|.|.| ++++|++++
T Consensus 112 s~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity 190 (235)
T cd08872 112 AQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITY 190 (235)
T ss_pred CCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEE
Confidence 123332111111111 11 122222211 1 11125577777 567899999
Q ss_pred EEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc
Q 024198 188 TVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLLKAIS 227 (271)
Q Consensus 188 ~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~aE~~~ 227 (271)
....+|.|.+-. -+++.+.++.+-+.|+.|-+++....
T Consensus 191 ~~~~dPgG~iP~--wvvn~~~k~~~P~~l~~~~~~~~~~~ 228 (235)
T cd08872 191 VANVNPGGWAPA--SVLRAVYKREYPKFLKRFTSYVQEKT 228 (235)
T ss_pred EEEeCCCCCccH--HHHHHHHHhhchHHHHHHHHHHHHhc
Confidence 998885443322 34556778888899999988887643
No 65
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.15 E-value=0.014 Score=52.31 Aligned_cols=134 Identities=9% Similarity=0.084 Sum_probs=78.4
Q ss_pred CcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC---CEEEEEEEecccCeeEEEEEe-EEEeee
Q 024198 78 SPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP---DLSKWSLKYKAFGRDIEFSWL-ARNMQP 153 (271)
Q Consensus 78 ~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p---~~s~w~l~i~~~G~~~eftW~-aeVTe~ 153 (271)
+|+-.| .++++|++++++|.+.+-|. .++|...+.+.++++.-. ......++.+......+|.-. ...+.
T Consensus 49 s~l~~~---r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~- 122 (204)
T cd08908 49 PPLRLW---RTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTN- 122 (204)
T ss_pred CCcEEE---EEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEe-
Confidence 565433 36779999999999999888 899999999988886432 223333333221223344210 00111
Q ss_pred cCCeE--EEEEEe----------cCCCceEEEEEEECCCCceEEEEEEEEEeCcchH-HHHHHhhhhHHHHHHHHHHHHH
Q 024198 154 IPNQK--IHWRSL----------EGLPNRGAVRFFPKGPSSCIVELTVSYEVPQLLV-PLHQHLNLFLKPYLDVDWIALQ 220 (271)
Q Consensus 154 ~P~~r--I~w~sv----------eG~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~-~~a~ll~~~~~r~vr~~L~aFK 220 (271)
.++.. |...|+ -+....+.|.++|.++++|+|++....+|.|-+- -++. .+...+.+.|.+++
T Consensus 123 ~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~iP~W~~N----~~g~~~~~~~~~~r 198 (204)
T cd08908 123 LPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHMPEWYTK----SFGHLCAAEVVKIR 198 (204)
T ss_pred CCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCCcHHHHh----hHHHHHHHHHHHHH
Confidence 12222 222211 1234578899999988899999999999755543 2223 33344444444444
Q ss_pred H
Q 024198 221 H 221 (271)
Q Consensus 221 ~ 221 (271)
.
T Consensus 199 ~ 199 (204)
T cd08908 199 D 199 (204)
T ss_pred h
Confidence 3
No 66
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=96.79 E-value=0.033 Score=45.62 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=71.0
Q ss_pred EEEEEcCCHHHHHHHHhCCCC--chhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEec
Q 024198 88 VKSEIDVPVSVAYNAYSDRES--IPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLE 165 (271)
Q Consensus 88 vSi~I~AP~e~VfdlvsD~en--~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sve 165 (271)
++..+++|++++|+++.|--- +.+....-..+.-+ . +..+.=..+- + .+.+ .+||+++||+........
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~---G~~Y~K~~~~-~--~~~~--v~It~~~~~~~Y~~~~~s 73 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-K---GFSYQKKFKN-K--REAK--VKITEYEPNKRYAATFSS 73 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-C---CcEEEEEcCC-C--CEEE--EEEEEEcCCCEEEEEEEe
Confidence 677899999999999876322 22222222222222 2 3444444431 2 2434 889999999998888876
Q ss_pred C-CCceEEEEEEECCCCceEEEEEEEEEeCcchHH
Q 024198 166 G-LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVP 199 (271)
Q Consensus 166 G-~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~ 199 (271)
. -....+|.++|.+++.|+|+++=+++..+.+..
T Consensus 74 ~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~~~~~ 108 (120)
T PF11687_consen 74 SRGTFTISYEIEPLDDGSIEVTYEEEYESKGFFQK 108 (120)
T ss_pred cCCCEEEEEEEEECCCCcEEEEEEEEEccCCHHHH
Confidence 5 678999999999988899999998887665443
No 67
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.34 E-value=0.12 Score=43.94 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=58.3
Q ss_pred EEEEEEcCCHHHHHHHHhCCCCchhcccCCce----EEEeecCCCEEEEEEE--ecc----------cCeeEEEEEeEEE
Q 024198 87 TVKSEIDVPVSVAYNAYSDRESIPRWMPFISS----VKILEDKPDLSKWSLK--YKA----------FGRDIEFSWLARN 150 (271)
Q Consensus 87 tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~s----Vevl~d~p~~s~w~l~--i~~----------~G~~~eftW~aeV 150 (271)
+.++++++|+|+||+.+.|.+-+..=+..+.. ++-.+.++++..-.+. ++. .|..+.++ +.
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~---~~ 78 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVT---RT 78 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEE---EE
Confidence 36789999999999999999887775444433 3333322222222221 111 11122222 11
Q ss_pred eeecC--CeEEEEEE---ecC--CCceEEEEEEECCCCceEEEEEEEEEe
Q 024198 151 MQPIP--NQKIHWRS---LEG--LPNRGAVRFFPKGPSSCIVELTVSYEV 193 (271)
Q Consensus 151 Te~~P--~~rI~w~s---veG--~~~~g~~~Fep~gdggTrVtl~ieye~ 193 (271)
..+.| +....... +.| ....|+.++.|. +++|+++++.+.+.
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~-~~gt~~~~~g~v~v 127 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAPVSISGTMRLRPD-GGGTRLTVEGEVKV 127 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCceEEEEEEEEEecC-CCCEEEEEEEEEEE
Confidence 11222 23333322 234 567999999994 47899998888875
No 68
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=95.89 E-value=0.35 Score=40.97 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=69.4
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCC-chhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEE--EE
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRES-IPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIH--WR 162 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en-~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~--w~ 162 (271)
.+.++....+++.|...++||+. +|+..|.+++++ .+++ .......+ ++.... ...+.+.-...+. +.
T Consensus 3 ~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p~ik~v~-~~~~--sF~~~g~~--~~~~~~----~~G~vy~s~~~ItYvf~ 73 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTILSDPEFVLPRLFPPIKSVK-VEEN--SFRAEGKF--GGFPFE----MKGNVYVSSNEITYVFN 73 (136)
T ss_dssp EEEEEE-SS-HHHHHHHHT-HHHHHHHHSTTEEEEE--STT--EEEEEEEE--TTEEEE----EEEEEEEETTEEEEEEE
T ss_pred EEEEeccCCChHheEEEecCCccEecccCCceEEEE-ecCC--EEEEEEEE--eeEEEE----EEEEEEEccceEEEEEE
Confidence 46778889999999999999998 799999999998 4433 44444444 343333 4455554444544 44
Q ss_pred EecC-CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHH
Q 024198 163 SLEG-LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIAL 219 (271)
Q Consensus 163 sveG-~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aF 219 (271)
...| ....|..+|.... + .|.+.++|+ |.+..+. +..+++.+.+-.++|
T Consensus 74 ~~~g~~~g~GkL~i~~~~-~--~i~l~~eye--g~~e~~~---~~~i~~~i~~f~~~l 123 (136)
T PF11485_consen 74 LAGGGPNGNGKLTIQLEN-G--KIKLIFEYE--GWMESLS---GFFISKWIEKFKKNL 123 (136)
T ss_dssp ----ETTEEEEEEEEEET-T--EEEEEEEES---HHHHHH---HHHHHHHHHHHHHHH
T ss_pred eeccCCCCcEEEEEEecC-C--EEEEEEEcc--cchHhhh---HHHHHHHHHHHHhhh
Confidence 4565 6778999888843 2 788888887 4444322 234444444444444
No 69
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=95.07 E-value=1.8 Score=38.90 Aligned_cols=142 Identities=14% Similarity=0.170 Sum_probs=82.6
Q ss_pred eeeeccCCCCCcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecC---CCEEEEEEEecccCeeEEE
Q 024198 68 SIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDK---PDLSKWSLKYKAFGRDIEF 144 (271)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~---p~~s~w~l~i~~~G~~~ef 144 (271)
+.|....+ -+|+-.|. ++++|++|+++|.+.+.+ ..++|-..+.+.++++.- .+...+.++....-...+|
T Consensus 40 ~~ykK~~d-~~~lk~~r---~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD~ 113 (205)
T cd08909 40 LAYKKVGD-GNPLRLWK---VSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRDF 113 (205)
T ss_pred EEEecCCC-CCceEEEE---EEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCEE
Confidence 34444444 47776554 578999999999887766 699999999998777643 2334555443210012233
Q ss_pred EEeEEEee-ecCCe--EEEEEEecC-----------CCceEEEEEEECCCCceEEEEEEEEEeCcchHH-HHHHhhhhHH
Q 024198 145 SWLARNMQ-PIPNQ--KIHWRSLEG-----------LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVP-LHQHLNLFLK 209 (271)
Q Consensus 145 tW~aeVTe-~~P~~--rI~w~sveG-----------~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~-~a~ll~~~~~ 209 (271)
.- .+... ..+.. .|...+++. ....+.|.++|.++++|+|++....++.|.+-. ..+.++
T Consensus 114 v~-~R~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~~P~W~~n~~g---- 188 (205)
T cd08909 114 VV-LRSWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGHSPEWYNKGFG---- 188 (205)
T ss_pred EE-EEEEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCCChHHHHHhHH----
Confidence 20 11111 11222 233444332 123567999999888899999999998776543 233333
Q ss_pred HHHHHHHHHHH
Q 024198 210 PYLDVDWIALQ 220 (271)
Q Consensus 210 r~vr~~L~aFK 220 (271)
..+.+.|.+++
T Consensus 189 ~~~~~~~~~~r 199 (205)
T cd08909 189 HLCAAEAARIR 199 (205)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 70
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=94.65 E-value=1.9 Score=38.61 Aligned_cols=126 Identities=14% Similarity=0.060 Sum_probs=73.7
Q ss_pred EEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeec---CCCEEEEEEEecccC--eeEEEEEeEEEeee-cCCeEEE-
Q 024198 88 VKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILED---KPDLSKWSLKYKAFG--RDIEFSWLARNMQP-IPNQKIH- 160 (271)
Q Consensus 88 vSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d---~p~~s~w~l~i~~~G--~~~eftW~aeVTe~-~P~~rI~- 160 (271)
.+.+|++++++||+++.|.+...+|-+.|.+.++++. +....+.+..-...| ..++|.- .+.... +.+..+.
T Consensus 50 ~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~-vr~~~r~~~~~~ii~ 128 (204)
T cd08904 50 VEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVD-LVHIKRYEGNMNIVS 128 (204)
T ss_pred EEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccCceEEE-EEEEEEeCCCEEEEE
Confidence 7789999999999999999999999999999888854 212233222211111 1234331 122222 2222211
Q ss_pred EEEec--C-C---------CceEEEEEEECCC--CceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHH
Q 024198 161 WRSLE--G-L---------PNRGAVRFFPKGP--SSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQ 220 (271)
Q Consensus 161 w~sve--G-~---------~~~g~~~Fep~gd--ggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK 220 (271)
-.+++ . + -.-+-|-+.|+++ ++|.+++-+-.++.|.+-.. .+++.+...|-+|-
T Consensus 129 ~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~------vv~~~~~~~~~~f~ 196 (204)
T cd08904 129 SVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRS------VIEKTMPTNLVNLI 196 (204)
T ss_pred EEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHH------HHHHHhHHHHHHHH
Confidence 22221 1 1 1235578889865 37999999999998876542 23444444444443
No 71
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=91.99 E-value=9 Score=34.51 Aligned_cols=112 Identities=10% Similarity=0.055 Sum_probs=66.8
Q ss_pred EEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC---CEEEEEEEecccC--eeEEEEEeEEEeeecCCeEEEEE
Q 024198 88 VKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP---DLSKWSLKYKAFG--RDIEFSWLARNMQPIPNQKIHWR 162 (271)
Q Consensus 88 vSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p---~~s~w~l~i~~~G--~~~eftW~aeVTe~~P~~rI~w~ 162 (271)
.+..|+.-++++++++.+.....+|-+.++++++++.-. ...+..-.-.++| -.++|.=-..+..++.+-...-.
T Consensus 51 ~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~s~gv 130 (202)
T cd08902 51 AQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLLSCGV 130 (202)
T ss_pred EEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCeEEEEe
Confidence 667788999999999999999999999999999886422 1223322111112 12344311233334333222222
Q ss_pred EecC----------CCceEEEEEEECCCC--ceEEEEEEEEEeCcchHH
Q 024198 163 SLEG----------LPNRGAVRFFPKGPS--SCIVELTVSYEVPQLLVP 199 (271)
Q Consensus 163 sveG----------~~~~g~~~Fep~gdg--gTrVtl~ieye~pg~L~~ 199 (271)
+++. .-+=+-|-..|.+++ .|.++.-+..++.|.+-+
T Consensus 131 s~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPq 179 (202)
T cd08902 131 SIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQ 179 (202)
T ss_pred eecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCCccH
Confidence 2221 112345788998644 577777888888877654
No 72
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=91.89 E-value=3.5 Score=35.20 Aligned_cols=121 Identities=16% Similarity=0.229 Sum_probs=62.5
Q ss_pred CHHHHHHHHhCCCCchh-cccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEecCCCceEEE
Q 024198 95 PVSVAYNAYSDRESIPR-WMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLEGLPNRGAV 173 (271)
Q Consensus 95 P~e~VfdlvsD~en~P~-wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sveG~~~~g~~ 173 (271)
..++||+=+..-..-|+ |+|++.+.+++++.+....=++.++ +. .+. .+++. .|+.++.+....|.......
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg--~~--~v~--E~v~~-~~~~~V~f~~~~Gs~lt~~I 91 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFG--GA--TVR--ERVTL-YPPERVDFAQHDGSSLTNII 91 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEET--TE--EEE--EEEEE-ETTTEEEESSSBEEEEEEEE
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEEC--Cc--EEE--EEEEE-eCCcEEEEEcCCCCEEEEEE
Confidence 45789986665555555 9999999999998766666666664 53 332 45554 47788988555553333333
Q ss_pred EEEECCCCceEEEEEEEEE--eCcchH---H---HHHHhhhhHHHHHHHHHHHHHHHHhhc
Q 024198 174 RFFPKGPSSCIVELTVSYE--VPQLLV---P---LHQHLNLFLKPYLDVDWIALQHLLKAI 226 (271)
Q Consensus 174 ~Fep~gdggTrVtl~ieye--~pg~L~---~---~a~ll~~~~~r~vr~~L~aFK~~aE~~ 226 (271)
. +| +++ .+-++..|+ .|+.-. . ........-+.+....++..+++++++
T Consensus 92 ~-e~-~~g--~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~G 148 (149)
T PF08982_consen 92 S-EP-EPG--DLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKEG 148 (149)
T ss_dssp E-EE-ETT--EEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred e-cC-CCC--cEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 34 223 445555455 343211 1 112233345556666677777777654
No 73
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=1.6 Score=34.71 Aligned_cols=76 Identities=16% Similarity=0.079 Sum_probs=49.9
Q ss_pred EEEeeecCCeEEEEEEecC----CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 024198 148 ARNMQPIPNQKIHWRSLEG----LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLL 223 (271)
Q Consensus 148 aeVTe~~P~~rI~w~sveG----~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~a 223 (271)
-.|...+|.+.++|..--. +...-....++++++.|++.-..+|. |.+.++...+.+-........=.++|+++
T Consensus 13 P~il~~~P~reL~W~~~~~~~~l~~~~~~~~le~~~~~~t~~~q~e~F~--Gvlv~fv~~lr~~~~~~f~~~n~alr~ra 90 (93)
T COG4891 13 PVILGLEPLRELTWLGNVRFPGLLDGERYFELEALWGGRTRFAQGESFS--GVLVPFVSELRRGLTASFENMNPALRARA 90 (93)
T ss_pred eEEEecccchheeeecccccceEEeeEEEEEEeecCCccceeeccceec--ceeeccchhhhccchhhhhhhCHHHHhhh
Confidence 5566678889999988644 34455566677777889888877665 55555433233344445555557788888
Q ss_pred hh
Q 024198 224 KA 225 (271)
Q Consensus 224 E~ 225 (271)
|+
T Consensus 91 E~ 92 (93)
T COG4891 91 EA 92 (93)
T ss_pred hc
Confidence 85
No 74
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=84.62 E-value=24 Score=29.93 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=58.5
Q ss_pred HHHHhCCCCchhcccCCceEEEeecCCCEEEEEEE-ecccCeeEEEEEeEEEeeecCC---eEEEEEEecC---C-----
Q 024198 100 YNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLK-YKAFGRDIEFSWLARNMQPIPN---QKIHWRSLEG---L----- 167 (271)
Q Consensus 100 fdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~-i~~~G~~~eftW~aeVTe~~P~---~rI~w~sveG---~----- 167 (271)
=+|++|++++=.-+..-..++.++++ +.+..+. +++++..++=+-..++...+.+ +...++. .| .
T Consensus 5 ~~YL~~~~r~~~~~~d~~~ie~l~~~--~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l-~G~~~~~~~~~ 81 (158)
T PF09366_consen 5 AEYLSDPQRWFSALFDPMRIEPLGDN--TYRLKMRPFQFFGFEVEPVVDLRVWPQDDGLTIRSLDCEL-RGSPLVEQNDG 81 (158)
T ss_pred HHHHhCchhHHHHhcCHHHcEEcCCC--eEEEEEcCccEEEEEEEEEEEEEEEEcCCCeEEEEEEEEE-eCCCccccCCc
Confidence 47888888877766666778888864 4554442 3333333332223444443333 1122222 23 1
Q ss_pred ---CceEEEEEEECCCCceEEEEEEE----EEeCcchHHH-HHHhhhhHHHHHHHHHHHHHHHH
Q 024198 168 ---PNRGAVRFFPKGPSSCIVELTVS----YEVPQLLVPL-HQHLNLFLKPYLDVDWIALQHLL 223 (271)
Q Consensus 168 ---~~~g~~~Fep~gdggTrVtl~ie----ye~pg~L~~~-a~ll~~~~~r~vr~~L~aFK~~a 223 (271)
..++..+..+ +++.|.|...++ .++|..+..+ -.++...-+..++..++.++.++
T Consensus 82 f~l~~~~~l~~~~-~~~~t~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~ 144 (158)
T PF09366_consen 82 FSLDLQASLYPEE-PPGRTRLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRF 144 (158)
T ss_pred EEEEEEEEEEEec-CCCceEEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355555544 335666655544 4456654322 12333344444555555444443
No 75
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.24 E-value=3.8 Score=38.95 Aligned_cols=92 Identities=17% Similarity=0.304 Sum_probs=60.0
Q ss_pred eEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEE--EEE
Q 024198 86 CTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIH--WRS 163 (271)
Q Consensus 86 ~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~--w~s 163 (271)
-+.+.++++|++++|+.+.|++.+..|...-...+.-.+ -.+.+- .| ..+ .+.++.++++.|. |+.
T Consensus 175 i~l~~tfn~~~~eLy~~fld~~rv~~wt~S~a~l~~~~~----g~f~lf---~G---nVt--g~~~~~e~~K~Iv~kWrl 242 (301)
T KOG2936|consen 175 ISLSATFNCRVDELYEIFLDPERVKAWTRSPAELEADPG----GKFSLF---DG---NVT--GEFLELEKNKKIVMKWRL 242 (301)
T ss_pred ceehhhcCCCHHHHHHHHhcHHHHHHhcCChhhcccCCC----CceEEe---cc---cce--eeeeeecCCCeEEEEEec
Confidence 346778999999999999999999999884333332221 122221 13 222 4666778888754 887
Q ss_pred ec---CCCceEEEEEEECCCCceEEEEEEE
Q 024198 164 LE---GLPNRGAVRFFPKGPSSCIVELTVS 190 (271)
Q Consensus 164 ve---G~~~~g~~~Fep~gdggTrVtl~ie 190 (271)
.+ |...+...+|...+ +.|.+.+...
T Consensus 243 ~~Wp~~~~atI~~~f~~~~-~~t~l~~~~k 271 (301)
T KOG2936|consen 243 KSWPDGHDATITLTFYESQ-GETKLQVKQK 271 (301)
T ss_pred ccCCCCccceEEEEEecCC-CceEEEEEec
Confidence 64 34556666666644 6788887763
No 76
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=83.24 E-value=28 Score=29.66 Aligned_cols=93 Identities=10% Similarity=0.178 Sum_probs=54.1
Q ss_pred CHHHHHHHHhCC-CCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEEEeEEEeeecCCeEEEEEEec-CCCceEE
Q 024198 95 PVSVAYNAYSDR-ESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFSWLARNMQPIPNQKIHWRSLE-GLPNRGA 172 (271)
Q Consensus 95 P~e~VfdlvsD~-en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eftW~aeVTe~~P~~rI~w~sve-G~~~~g~ 172 (271)
..+|+|.=+--- ++--.|.|++.+.+++++.+....=++.++ +..+ . .+++ ..|+.++++.... | ...+
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l~Rel~f~--~~~v--~--e~vt-~~~~~~v~f~~~~~g--~~l~ 88 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVLERELTFG--PAKI--R--ETVT-LEPPSRVHFLQADAG--GTLT 88 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccccceEEEEecCCCEEEEEEEEC--CceE--E--EEEE-ecCCcEEEEEecCCC--CeEE
Confidence 467898755544 444459999999999998754444445554 3222 2 3444 4578899998887 5 2222
Q ss_pred EEEEECCCCceEEEEEEEEEeCcc
Q 024198 173 VRFFPKGPSSCIVELTVSYEVPQL 196 (271)
Q Consensus 173 ~~Fep~gdggTrVtl~ieye~pg~ 196 (271)
...+.-.++.=-+++..+...|+.
T Consensus 89 ~~iee~~~g~L~lrf~ye~~~p~~ 112 (141)
T cd08863 89 NTIEEPEDGALYLRFVYETTLPEV 112 (141)
T ss_pred EEeccCCCCcEEEEEEEEecCCCc
Confidence 222332344444455544445653
No 77
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=78.46 E-value=54 Score=29.99 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=89.2
Q ss_pred CCcccccceeeeccCCCCCcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCC----CEEEEEEEe
Q 024198 60 HGSFKRSSSIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKP----DLSKWSLKY 135 (271)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p----~~s~w~l~i 135 (271)
....|.+-.+++-.+. -+++++ +++ ..+-=|++|+.|+|+..|-+-=++|=..+.+.+.++..+ ...+|..+.
T Consensus 33 ~~~~k~~~~i~~q~~~-~~g~~~-Yk~-~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kf 109 (219)
T KOG2761|consen 33 LVMDKSTPSIWRQRRP-KTGLYE-YKS-RTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKF 109 (219)
T ss_pred hhcccCCceEEEEccc-CCCCEE-EEE-EEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeC
Confidence 3344445455553333 233443 222 234458999999999999999999999999998887653 357899998
Q ss_pred cccCeeEEEEEeEEEeeec-CCeEEEEEEecC---CCc---------eEEEE----EEECCCCceEEEEEEEEEeCcchH
Q 024198 136 KAFGRDIEFSWLARNMQPI-PNQKIHWRSLEG---LPN---------RGAVR----FFPKGPSSCIVELTVSYEVPQLLV 198 (271)
Q Consensus 136 ~~~G~~~eftW~aeVTe~~-P~~rI~w~sveG---~~~---------~g~~~----Fep~gdggTrVtl~ieye~pg~L~ 198 (271)
++.-...+|..--++.+.. ....+.-+++.- +.+ ...|. +...++.+|.+.+..--.+.|++-
T Consensus 110 P~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~~~iP 189 (219)
T KOG2761|consen 110 PFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNPGGGIP 189 (219)
T ss_pred CcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECCCCCCc
Confidence 7544445554322333322 112222222211 111 11122 222345689998888556555543
Q ss_pred -HHHHH-hhhhHHHHHHHHHHHHHHHHh
Q 024198 199 -PLHQH-LNLFLKPYLDVDWIALQHLLK 224 (271)
Q Consensus 199 -~~a~l-l~~~~~r~vr~~L~aFK~~aE 224 (271)
.++++ .+..+-..++++-.++++..+
T Consensus 190 ~~~v~~~~~~gmp~~vkKm~~a~~~Y~~ 217 (219)
T KOG2761|consen 190 KWVVKLAVRKGMPGAVKKMEKALLAYQE 217 (219)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhhh
Confidence 33332 223344455555555555544
No 78
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=69.90 E-value=1.6e+02 Score=31.49 Aligned_cols=116 Identities=12% Similarity=0.120 Sum_probs=70.1
Q ss_pred CCcccccceeEEEEEEcCCHHHHHHHHhCCC-CchhcccCCceEEEeecCC---CEEEEEEEeccc-C--eeEEEEEeEE
Q 024198 77 FSPVMEWQDCTVKSEIDVPVSVAYNAYSDRE-SIPRWMPFISSVKILEDKP---DLSKWSLKYKAF-G--RDIEFSWLAR 149 (271)
Q Consensus 77 ~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~e-n~P~wmpgv~sVevl~d~p---~~s~w~l~i~~~-G--~~~eftW~ae 149 (271)
.+++|. +.-+|++++|+||+++.++. .-.+|-..+.+.++++.-. .....+++-+.+ + ...+|.- .+
T Consensus 225 ~~~~mK-----avGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~-~R 298 (719)
T PLN00188 225 CSRAMK-----AVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCY-VR 298 (719)
T ss_pred CCceeE-----EEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEE-EE
Confidence 456665 77799999999999998777 7788988888887775421 222233331111 1 1234331 22
Q ss_pred EeeecCCeE--EEEEEecC---C---------CceEEEEEEECC----CCceEEEEEEEEEeCcchH
Q 024198 150 NMQPIPNQK--IHWRSLEG---L---------PNRGAVRFFPKG----PSSCIVELTVSYEVPQLLV 198 (271)
Q Consensus 150 VTe~~P~~r--I~w~sveG---~---------~~~g~~~Fep~g----dggTrVtl~ieye~pg~L~ 198 (271)
.....++.. +...+++= . -.-|-|...|+. ..+|.|+.-+..++.|...
T Consensus 299 ywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 299 YWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 233333332 22333321 1 124678888963 2479999999999988654
No 79
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=47.90 E-value=1.1e+02 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=20.9
Q ss_pred CceEEEEEEECCCCceEEEEEEEEEeC
Q 024198 168 PNRGAVRFFPKGPSSCIVELTVSYEVP 194 (271)
Q Consensus 168 ~~~g~~~Fep~gdggTrVtl~ieye~p 194 (271)
..-..+.+.|.+++.|++...+-+..+
T Consensus 97 ~~~~~~~~~P~~~~~t~~~~~~~~~~~ 123 (188)
T cd00680 97 DSLQVQQFVPIGPNKTRLEVRLYRPKD 123 (188)
T ss_pred CEEEEEEEEecCCCcEEEEEEEEEecc
Confidence 345678899999889999999755543
No 80
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=44.25 E-value=2.5e+02 Score=25.47 Aligned_cols=144 Identities=10% Similarity=0.081 Sum_probs=76.1
Q ss_pred eeeeccCCCCCcccccceeEEEEEEcCCHHHHHHHHhCCCCchhcccCCceEEEeecCCCEEEEEEEecccCeeEEEE--
Q 024198 68 SIFTPSRHFFSPVMEWQDCTVKSEIDVPVSVAYNAYSDRESIPRWMPFISSVKILEDKPDLSKWSLKYKAFGRDIEFS-- 145 (271)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~tvSi~I~AP~e~VfdlvsD~en~P~wmpgv~sVevl~d~p~~s~w~l~i~~~G~~~eft-- 145 (271)
+.|..+.. =+|+--|. ++..+ =+-|++.+++++.|...|-.=|-.-..++.++++.+...+.++.+..-...+|.
T Consensus 40 v~~kk~~d-~~~l~lwk-~s~ei-~~~p~~vl~rvL~dR~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~RDfv~l 116 (205)
T cd08907 40 LACKKVGD-GHPLRLWK-VSTEV-EAPPSVVLQRVLRERHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHPRRDFVVL 116 (205)
T ss_pred EEEEeCCC-CCceEEEE-EEEEe-cCCCHHHHHHHhhchhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCCCceEEEE
Confidence 55555554 36665343 33322 355667789999995555555555666777776555555555432111122322
Q ss_pred --EeEEEeeecCC-eEEEEEEec--------C---CCceEEEEEEECCCCceEEEEEEEEEeCcchHHHHHHhhhhHHHH
Q 024198 146 --WLARNMQPIPN-QKIHWRSLE--------G---LPNRGAVRFFPKGPSSCIVELTVSYEVPQLLVPLHQHLNLFLKPY 211 (271)
Q Consensus 146 --W~aeVTe~~P~-~rI~w~sve--------G---~~~~g~~~Fep~gdggTrVtl~ieye~pg~L~~~a~ll~~~~~r~ 211 (271)
|... ...+ -.|.=.+++ | ......|-.+|.+.++|+|++-..-++.|.+-.-. ...+...
T Consensus 117 RsW~~~---l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~~P~Wy---nk~~g~~ 190 (205)
T cd08907 117 RMWRSD---LPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGRSPDWY---NKVFGHL 190 (205)
T ss_pred EEEccC---CCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCCCcHHH---HHhHHHH
Confidence 3111 1111 122222222 1 22344577889888899999999998877654321 2233444
Q ss_pred HHHHHHHHH
Q 024198 212 LDVDWIALQ 220 (271)
Q Consensus 212 vr~~L~aFK 220 (271)
+.+.|.+++
T Consensus 191 ~a~~l~~ir 199 (205)
T cd08907 191 CAMEVARIR 199 (205)
T ss_pred HHHHHHHHH
Confidence 444454444
No 81
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.78 E-value=16 Score=22.22 Aligned_cols=8 Identities=63% Similarity=1.364 Sum_probs=6.0
Q ss_pred eeccceeh
Q 024198 247 FHCGYHFI 254 (271)
Q Consensus 247 ~~~~~~~~ 254 (271)
-||||.|.
T Consensus 18 p~CG~~F~ 25 (26)
T PF10571_consen 18 PHCGYDFE 25 (26)
T ss_pred CCCCCCCc
Confidence 47888875
No 82
>COG2033 Desulfoferrodoxin [Energy production and conversion]
Probab=29.94 E-value=25 Score=29.40 Aligned_cols=20 Identities=35% Similarity=0.762 Sum_probs=17.1
Q ss_pred ceeheeeeeeeeeecccccC
Q 024198 251 YHFINWITIFLTFDCIARHE 270 (271)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~ 270 (271)
-|+|.||-.+..=||+.|-|
T Consensus 67 eHhI~WIel~~~~d~v~r~e 86 (126)
T COG2033 67 EHHIAWIELYFGPDLVGRKE 86 (126)
T ss_pred ceeEEEEEEEeCCCeEEEEe
Confidence 59999999998888988854
No 83
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=26.92 E-value=7.9 Score=27.94 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.1
Q ss_pred eeeeccCCCCCcccccceeE
Q 024198 68 SIFTPSRHFFSPVMEWQDCT 87 (271)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~t 87 (271)
+++++.+| |||++++++.+
T Consensus 43 ll~~g~~g-~Cp~~~llgi~ 61 (66)
T PF11127_consen 43 LLVTGITG-FCPLYALLGIN 61 (66)
T ss_pred HHHHHHHC-cCHhHHHhCCC
Confidence 67889999 99999988743
No 84
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=21.44 E-value=5.8e+02 Score=22.67 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=58.1
Q ss_pred CCCchhcccCCc--eEEEeecCC-CE----EEEEEEecccC--eeEEEEEeEEEe--eecC--CeEEEEEEe--c-----
Q 024198 106 RESIPRWMPFIS--SVKILEDKP-DL----SKWSLKYKAFG--RDIEFSWLARNM--QPIP--NQKIHWRSL--E----- 165 (271)
Q Consensus 106 ~en~P~wmpgv~--sVevl~d~p-~~----s~w~l~i~~~G--~~~eftW~aeVT--e~~P--~~rI~w~sv--e----- 165 (271)
.++-++|++.|. ++++++..+ .. ..+.+...+.. ..++|. ..+. ...+ +..+..... .
T Consensus 62 ~~~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv--~l~~~~~~~~~~~~~i~vs~p~~~~~~p~ 139 (208)
T cd08864 62 TEYEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFPLSPRVFN--ELVHIKSDLDPASEFMVVSLPITPPLVES 139 (208)
T ss_pred HhhhhhchhhhccceeEEeeecCCCccceEEEEEEEEECCCCCCCcEEE--EEEEeeccCCCCCeEEEEEEEecCCcCCc
Confidence 455668999999 788876532 12 22333332212 334554 2222 2223 333333321 1
Q ss_pred ---C----CCceE-EEEEEECC-CCceEEEEEE--EEEeCcchHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 024198 166 ---G----LPNRG-AVRFFPKG-PSSCIVELTV--SYEVPQLLVPLHQHLNLFLKPYLDVDWIALQHLL 223 (271)
Q Consensus 166 ---G----~~~~g-~~~Fep~g-dggTrVtl~i--eye~pg~L~~~a~ll~~~~~r~vr~~L~aFK~~a 223 (271)
| ....+ .|++.|.+ ++.+.|++.+ .-+|-|.+-.. +.+..+.+++-++...|-.-+
T Consensus 140 ~~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~w--l~n~~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 140 LYENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRW--LTKLTIPKAIAKDVPLFLDWI 206 (208)
T ss_pred cCCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHH--HHhccCchHHHHhHHHHHHHh
Confidence 1 12355 67777875 4567888887 77753333221 122345566667777665443
No 85
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.93 E-value=1.7e+02 Score=23.32 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccceeecccceeEEEEE
Q 024198 207 FLKPYLDVDWIALQHLLKAISRLNFRWSGLGNLIKLQVI 245 (271)
Q Consensus 207 ~~~r~vr~~L~aFK~~aE~~~~~~~~~~~~~~~~~~~~~ 245 (271)
-++.|.+..|+++++.+|+...+.+ =+|..+++|+++.
T Consensus 33 d~~~Q~~~~l~ni~~~L~~aG~~~~-~~~~~dVvk~~vy 70 (114)
T cd06153 33 DVEAQTRETLENIEALLEAAGRGGG-AQFLADLLRLKVY 70 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCC-ccchhheeEEEEE
Confidence 4678999999999999998765433 4589999999875
Done!