Query 024200
Match_columns 271
No_of_seqs 238 out of 782
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 2E-44 4.4E-49 297.0 7.2 117 114-231 1-118 (118)
2 KOG1609 Protein involved in mR 99.8 1.1E-20 2.3E-25 171.7 2.1 188 52-240 70-266 (323)
3 PHA02825 LAP/PHD finger-like p 99.8 2.2E-19 4.7E-24 154.8 3.3 66 57-125 5-70 (162)
4 PHA02862 5L protein; Provision 99.7 2.1E-17 4.5E-22 140.9 3.8 54 60-115 2-55 (156)
5 smart00744 RINGv The RING-vari 99.7 2.5E-17 5.5E-22 116.6 2.9 48 62-109 1-49 (49)
6 PF12906 RINGv: RING-variant d 99.6 3.9E-17 8.4E-22 114.8 1.3 46 63-108 1-47 (47)
7 KOG3053 Uncharacterized conser 99.5 1.2E-14 2.6E-19 133.8 4.0 64 57-120 17-89 (293)
8 COG5183 SSM4 Protein involved 99.5 3.1E-14 6.7E-19 146.3 4.6 58 60-117 12-72 (1175)
9 PF13639 zf-RING_2: Ring finge 97.5 4.9E-05 1.1E-09 51.6 1.6 41 62-109 2-44 (44)
10 KOG4628 Predicted E3 ubiquitin 97.0 0.00071 1.5E-08 65.5 4.4 48 61-114 230-279 (348)
11 PLN03208 E3 ubiquitin-protein 96.9 0.0011 2.4E-08 59.6 3.9 50 58-113 16-79 (193)
12 cd00162 RING RING-finger (Real 96.8 0.00098 2.1E-08 43.1 2.6 44 62-111 1-44 (45)
13 PHA02929 N1R/p28-like protein; 96.7 0.0013 2.9E-08 60.6 3.2 48 59-113 173-227 (238)
14 COG5540 RING-finger-containing 96.6 0.0017 3.7E-08 62.3 3.3 49 58-113 321-372 (374)
15 COG5243 HRD1 HRD ubiquitin lig 96.4 0.0047 1E-07 60.7 5.0 48 58-112 285-344 (491)
16 PF00097 zf-C3HC4: Zinc finger 96.1 0.0033 7.1E-08 41.6 1.6 41 63-108 1-41 (41)
17 smart00184 RING Ring finger. E 96.1 0.0056 1.2E-07 38.0 2.5 39 63-108 1-39 (39)
18 PF13920 zf-C3HC4_3: Zinc fing 96.0 0.0038 8.2E-08 43.5 1.5 46 60-113 2-48 (50)
19 PF12678 zf-rbx1: RING-H2 zinc 95.8 0.0052 1.1E-07 46.6 1.9 41 62-109 21-73 (73)
20 PF11793 FANCL_C: FANCL C-term 95.7 0.0039 8.5E-08 47.1 0.7 52 60-114 2-67 (70)
21 KOG0317 Predicted E3 ubiquitin 95.6 0.029 6.2E-07 53.3 6.3 55 53-115 232-286 (293)
22 KOG0802 E3 ubiquitin ligase [P 95.4 0.011 2.4E-07 59.7 2.9 47 59-112 290-340 (543)
23 PF12861 zf-Apc11: Anaphase-pr 95.3 0.013 2.8E-07 46.5 2.4 51 60-114 21-83 (85)
24 PHA02926 zinc finger-like prot 95.2 0.018 3.9E-07 53.2 3.4 60 57-123 167-238 (242)
25 smart00504 Ubox Modified RING 93.9 0.066 1.4E-06 38.0 3.2 45 61-113 2-46 (63)
26 KOG0828 Predicted E3 ubiquitin 93.7 0.054 1.2E-06 55.1 3.3 55 53-113 564-634 (636)
27 PF13923 zf-C3HC4_2: Zinc fing 93.7 0.029 6.3E-07 37.1 0.9 38 63-108 1-39 (39)
28 COG5219 Uncharacterized conser 91.8 0.049 1.1E-06 59.0 0.0 53 58-113 1467-1523(1525)
29 KOG0823 Predicted E3 ubiquitin 91.7 0.24 5.2E-06 45.8 4.3 52 56-113 43-95 (230)
30 PF14634 zf-RING_5: zinc-RING 90.7 0.17 3.8E-06 34.4 1.9 42 62-110 1-44 (44)
31 TIGR00599 rad18 DNA repair pro 89.6 0.25 5.3E-06 49.0 2.6 49 58-114 24-72 (397)
32 KOG0827 Predicted E3 ubiquitin 89.4 0.29 6.3E-06 48.7 2.9 45 60-109 4-52 (465)
33 KOG1493 Anaphase-promoting com 89.1 0.13 2.8E-06 40.5 0.2 49 62-114 22-82 (84)
34 COG5194 APC11 Component of SCF 85.7 0.49 1.1E-05 37.6 1.7 27 86-114 56-82 (88)
35 KOG0804 Cytoplasmic Zn-finger 85.2 0.31 6.7E-06 49.1 0.5 47 57-112 172-221 (493)
36 PF05883 Baculo_RING: Baculovi 84.1 0.57 1.2E-05 40.1 1.5 41 58-100 24-69 (134)
37 KOG1785 Tyrosine kinase negati 84.0 0.4 8.7E-06 48.0 0.6 48 60-113 369-416 (563)
38 PF05290 Baculo_IE-1: Baculovi 83.7 0.8 1.7E-05 39.5 2.2 55 59-114 79-133 (140)
39 PLN02189 cellulose synthase 83.1 0.82 1.8E-05 50.2 2.6 51 59-113 33-87 (1040)
40 PF06210 DUF1003: Protein of u 81.4 6.6 0.00014 32.3 6.7 48 180-227 6-56 (108)
41 PF14570 zf-RING_4: RING/Ubox 80.7 1.3 2.8E-05 31.8 2.1 45 63-113 1-48 (48)
42 PLN02436 cellulose synthase A 79.4 1.3 2.8E-05 48.9 2.5 51 59-113 35-89 (1094)
43 KOG4265 Predicted E3 ubiquitin 78.2 2.6 5.7E-05 41.3 4.0 50 57-113 287-336 (349)
44 COG4420 Predicted membrane pro 77.4 6.1 0.00013 35.8 5.8 49 179-227 59-110 (191)
45 KOG0825 PHD Zn-finger protein 75.4 2.8 6.1E-05 45.3 3.5 31 76-113 141-171 (1134)
46 KOG4445 Uncharacterized conser 71.4 2.1 4.5E-05 41.6 1.4 50 60-114 115-187 (368)
47 KOG2930 SCF ubiquitin ligase, 71.0 2.8 6.2E-05 34.8 1.9 26 86-113 83-108 (114)
48 PF15227 zf-C3HC4_4: zinc fing 71.0 2 4.3E-05 29.3 0.8 40 63-108 1-42 (42)
49 PF13445 zf-RING_UBOX: RING-ty 69.0 2.5 5.3E-05 29.3 1.0 39 63-106 1-43 (43)
50 KOG2177 Predicted E3 ubiquitin 68.1 2.5 5.3E-05 36.1 1.0 45 58-110 11-55 (386)
51 PLN02638 cellulose synthase A 67.6 6.3 0.00014 43.8 4.1 52 59-113 16-70 (1079)
52 PF04564 U-box: U-box domain; 66.5 3.1 6.8E-05 31.1 1.2 47 61-114 5-51 (73)
53 TIGR00570 cdk7 CDK-activating 64.3 6.6 0.00014 37.9 3.2 49 61-115 4-56 (309)
54 KOG1002 Nucleotide excision re 63.2 4.6 0.0001 42.0 2.0 56 58-119 534-592 (791)
55 KOG1645 RING-finger-containing 60.2 7.3 0.00016 39.2 2.7 49 60-112 4-55 (463)
56 COG5432 RAD18 RING-finger-cont 60.0 4.1 8.8E-05 39.6 0.9 47 59-113 24-70 (391)
57 PF10367 Vps39_2: Vacuolar sor 59.9 3.1 6.8E-05 32.0 0.1 32 59-95 77-109 (109)
58 PLN02195 cellulose synthase A 59.6 8.1 0.00018 42.5 3.2 52 59-113 5-59 (977)
59 KOG1734 Predicted RING-contain 59.3 3.5 7.6E-05 39.5 0.4 51 58-113 222-281 (328)
60 PF12273 RCR: Chitin synthesis 55.3 16 0.00035 30.2 3.7 18 223-240 12-29 (130)
61 PLN02400 cellulose synthase 55.2 9.2 0.0002 42.5 2.7 52 59-113 35-89 (1085)
62 PF08746 zf-RING-like: RING-li 52.3 7.9 0.00017 26.6 1.1 22 87-108 22-43 (43)
63 PF10272 Tmpp129: Putative tra 52.0 13 0.00028 36.7 2.9 35 76-113 306-351 (358)
64 PF14569 zf-UDP: Zinc-binding 51.0 17 0.00037 28.8 2.9 53 59-114 8-63 (80)
65 PLN02915 cellulose synthase A 50.6 15 0.00033 40.8 3.5 54 57-113 12-68 (1044)
66 KOG0287 Postreplication repair 50.3 6 0.00013 39.1 0.4 47 59-113 22-68 (442)
67 KOG0320 Predicted E3 ubiquitin 44.8 34 0.00074 31.0 4.2 51 55-112 126-177 (187)
68 KOG1039 Predicted E3 ubiquitin 41.7 21 0.00045 35.0 2.6 50 58-112 159-220 (344)
69 PF05191 ADK_lid: Adenylate ki 41.3 11 0.00025 25.1 0.5 18 103-120 2-19 (36)
70 KOG1941 Acetylcholine receptor 41.0 14 0.0003 37.3 1.3 47 59-110 364-413 (518)
71 PF06679 DUF1180: Protein of u 40.5 31 0.00068 30.4 3.3 23 220-242 107-131 (163)
72 KOG2927 Membrane component of 40.1 58 0.0013 32.3 5.3 20 208-228 232-251 (372)
73 KOG1952 Transcription factor N 38.0 30 0.00066 37.9 3.3 53 57-113 188-247 (950)
74 KOG2164 Predicted E3 ubiquitin 37.3 29 0.00064 35.7 3.0 49 60-114 186-237 (513)
75 KOG3970 Predicted E3 ubiquitin 36.2 72 0.0016 30.2 5.1 50 58-112 48-104 (299)
76 smart00249 PHD PHD zinc finger 35.8 11 0.00024 24.1 -0.2 29 63-94 2-30 (47)
77 COG5574 PEX10 RING-finger-cont 35.2 42 0.0009 32.0 3.4 52 56-114 211-263 (271)
78 PF11874 DUF3394: Domain of un 31.3 30 0.00064 31.1 1.7 21 220-240 162-182 (183)
79 PF12768 Rax2: Cortical protei 29.9 92 0.002 29.5 4.8 16 206-221 236-251 (281)
80 PF13894 zf-C2H2_4: C2H2-type 29.4 21 0.00046 19.7 0.3 11 104-114 2-12 (24)
81 PF09788 Tmemb_55A: Transmembr 29.0 46 0.001 31.5 2.6 67 165-231 182-249 (256)
82 PF07800 DUF1644: Protein of u 28.9 77 0.0017 28.2 3.8 39 60-100 2-49 (162)
83 COG5416 Uncharacterized integr 27.6 3.5E+02 0.0076 22.3 7.5 62 174-237 26-89 (98)
84 COG2322 Predicted membrane pro 27.6 1.6E+02 0.0034 26.6 5.5 55 179-233 84-144 (177)
85 COG1983 PspC Putative stress-r 26.9 70 0.0015 24.7 2.8 15 216-230 45-59 (70)
86 PF04532 DUF587: Protein of un 26.8 21 0.00047 32.7 0.0 27 66-92 93-122 (215)
87 PF07301 DUF1453: Protein of u 26.3 97 0.0021 27.1 3.9 52 180-237 95-146 (148)
88 KOG1428 Inhibitor of type V ad 26.3 62 0.0013 38.3 3.3 53 58-113 3484-3544(3738)
89 KOG3899 Uncharacterized conser 25.5 46 0.00099 32.6 1.9 27 87-113 328-365 (381)
90 KOG0824 Predicted E3 ubiquitin 25.0 78 0.0017 30.9 3.4 52 58-118 5-58 (324)
91 KOG0956 PHD finger protein AF1 24.5 38 0.00082 36.5 1.3 57 58-114 115-183 (900)
92 PF10571 UPF0547: Uncharacteri 24.3 37 0.0008 21.2 0.8 13 101-113 13-25 (26)
93 PF00096 zf-C2H2: Zinc finger, 24.1 28 0.00062 19.7 0.2 11 104-114 2-12 (23)
94 cd00730 rubredoxin Rubredoxin; 24.0 53 0.0011 23.5 1.6 15 103-117 2-16 (50)
95 COG5175 MOT2 Transcriptional r 24.0 72 0.0016 31.9 3.0 47 61-113 15-64 (480)
96 KOG0802 E3 ubiquitin ligase [P 23.0 57 0.0012 33.3 2.2 46 57-114 476-521 (543)
97 COG4846 CcdC Membrane protein 23.0 1.2E+02 0.0026 26.6 3.8 44 181-225 97-140 (163)
98 PF14941 OAF: Transcriptional 22.8 38 0.00082 31.7 0.8 50 74-123 180-235 (240)
99 PF04423 Rad50_zn_hook: Rad50 22.7 58 0.0013 22.9 1.6 23 92-114 8-32 (54)
100 PRK10747 putative protoheme IX 22.5 2.9E+02 0.0062 26.6 6.8 8 223-230 55-62 (398)
101 COG5236 Uncharacterized conser 21.1 1.3E+02 0.0029 30.2 4.2 51 58-114 59-109 (493)
102 PF04641 Rtf2: Rtf2 RING-finge 21.0 88 0.0019 28.9 2.9 49 58-114 111-162 (260)
103 PF13153 DUF3985: Protein of u 20.8 3E+02 0.0066 19.3 4.7 35 179-227 3-37 (44)
104 PHA03375 hypothetical protein; 20.7 34 0.00073 36.9 0.1 27 66-92 99-128 (844)
105 KOG0801 Predicted E3 ubiquitin 20.5 46 0.00099 30.0 0.8 23 59-81 176-200 (205)
106 PF13994 PgaD: PgaD-like prote 20.5 2.5E+02 0.0055 23.4 5.3 28 204-231 57-84 (138)
107 PF05210 Sprouty: Sprouty prot 20.5 70 0.0015 26.6 1.9 19 76-99 59-77 (108)
108 COG2738 Predicted Zn-dependent 20.3 2.2E+02 0.0048 26.5 5.2 34 185-218 110-144 (226)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=2e-44 Score=296.99 Aligned_cols=117 Identities=56% Similarity=1.077 Sum_probs=114.2
Q ss_pred ccccCCCCcccccccccccccCcccccccccCCceE-EEecccccCCCCccchhcccCCCchhhHHHHHHHHHHHHHHHh
Q 024200 114 PGYTAPPPLFQFGNIPMNFRGNWEISRRELNNPRII-MVAADHSFLQSPTYEEYSASNTRSMICCRSIALIFVFLLILRH 192 (271)
Q Consensus 114 ~~yt~p~~~~~~~~~~~~~r~~~~i~~~dl~~~~~i-~~~~~~~~~~~~~yd~~~~~~~~~~~~cRs~aii~m~lLllrh 192 (271)
|+||+|||+++.+++++++|++|+++++|+++++++ |+++|++|+++ +|+||+.+|++|++||||+|||||+||||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~d~~~~~~~a~~~ae~~~l~~-~y~e~~~~~~~~a~~CRsvAli~m~LLllRh 79 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRRDLRDPRFLAMAAAERQFLES-EYDEYAASNTRGAACCRSVALIFMVLLLLRH 79 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccccCccchhhhhhhhhhhhcccc-ccccccccCCCceeHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999 99999999999 5999999999999999999999999999999
Q ss_pred hhceeecCCCCCchHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024200 193 TLPVILSRTNDYSFPIFLQLFLRTAGIVLPIYVMVKAVT 231 (271)
Q Consensus 193 ~l~~~~~~~~~~s~~lf~l~~Lr~aGillP~yi~~~ai~ 231 (271)
+++++++|+++|+|++||+++||+||||||||||+|+|+
T Consensus 80 al~l~~~~~~~~s~~lftl~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 80 ALALVTGGAEDYSFTLFTLLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999974
No 2
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.80 E-value=1.1e-20 Score=171.73 Aligned_cols=188 Identities=26% Similarity=0.361 Sum_probs=144.8
Q ss_pred CCCCCCCCCCeeeEeccCCCCC---CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccccCCCCccccccc
Q 024200 52 GDISTPRKLVECRICQDEDADS---NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPLFQFGNI 128 (271)
Q Consensus 52 ~~~~~~~~~~~CRIC~e~~~~~---~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~yt~p~~~~~~~~~ 128 (271)
+..+.+.....||||+++.+.. .++.||.|+|+++|||+.|+++|+..|++..||+|++.|.+.++.+++...+...
T Consensus 70 ~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~ 149 (323)
T KOG1609|consen 70 SLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKV 149 (323)
T ss_pred ccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhh
Confidence 3445566679999999986533 5999999999999999999999999999999999999999999988888777665
Q ss_pred ccccccCccccc-ccccCCceE-EEecccccCCCCccchhcccCCCchhhHHHHH-HHHHHHHHHHhhhceeecC---CC
Q 024200 129 PMNFRGNWEISR-RELNNPRII-MVAADHSFLQSPTYEEYSASNTRSMICCRSIA-LIFVFLLILRHTLPVILSR---TN 202 (271)
Q Consensus 129 ~~~~r~~~~i~~-~dl~~~~~i-~~~~~~~~~~~~~yd~~~~~~~~~~~~cRs~a-ii~m~lLllrh~l~~~~~~---~~ 202 (271)
+....+.|.... ..++.+..+ +..+.+.++.. .++++....+..+..++.++ +.++++.++++.+.+.... ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (323)
T KOG1609|consen 150 RSGALSERTLSGMILLKVALLVAIIVSVLPLLLG-LLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIF 228 (323)
T ss_pred hhHhhhheeeehhhhhhhhhhheeeEEeehhhhh-hhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHH
Confidence 554444454443 244445454 44456666666 47888877777788899888 8889999999988776432 22
Q ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 024200 203 DYSFPIFLQLFLRTAGIVLPIYVMVKAVTALQRHRYQQ 240 (271)
Q Consensus 203 ~~s~~lf~l~~Lr~aGillP~yi~~~ai~~~q~~r~~~ 240 (271)
.+..+.+.+.++|+.++.++.+++++++-..|.++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (323)
T KOG1609|consen 229 ILKSLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRL 266 (323)
T ss_pred HHHHHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcc
Confidence 45566677789999999999999986677677776665
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.76 E-value=2.2e-19 Score=154.83 Aligned_cols=66 Identities=24% Similarity=0.549 Sum_probs=55.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccccCCCCcccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPLFQF 125 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~yt~p~~~~~~ 125 (271)
+...+.||||+++++ .+.+||+|+||+||||++||++|++.+++..||+|+++|.... ..+|+.+|
T Consensus 5 s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~-~~kpl~~W 70 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK-NYKKCTKW 70 (162)
T ss_pred CCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE-ecCCCccc
Confidence 456789999998864 4679999999999999999999999999999999999998763 33444444
No 4
>PHA02862 5L protein; Provisional
Probab=99.67 E-value=2.1e-17 Score=140.91 Aligned_cols=54 Identities=26% Similarity=0.660 Sum_probs=48.8
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
...||||++++++. .+||+|+||+||||++||++|++.+++..||+|+++|..+
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 35899999997544 6999999999999999999999999999999999999753
No 5
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.67 E-value=2.5e-17 Score=116.65 Aligned_cols=48 Identities=58% Similarity=1.318 Sum_probs=43.8
Q ss_pred eeeEeccC-CCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 024200 62 ECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 109 (271)
Q Consensus 62 ~CRIC~e~-~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk 109 (271)
+||||+++ +++++|+.||+|+|+++|||++||++|+.++++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999983 3456899999999999999999999999999999999996
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.64 E-value=3.9e-17 Score=114.80 Aligned_cols=46 Identities=50% Similarity=1.279 Sum_probs=37.7
Q ss_pred eeEeccCCCC-CCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 024200 63 CRICQDEDAD-SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108 (271)
Q Consensus 63 CRIC~e~~~~-~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEIC 108 (271)
||||++++++ ++|++||+|+|+++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999998754 469999999999999999999999999999999998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.2e-14 Score=133.81 Aligned_cols=64 Identities=30% Similarity=0.697 Sum_probs=55.6
Q ss_pred CCCCCeeeEeccCCCCC---CcccccccCCCCccccHHHHHHHHHHhC------CcccccccccccccccCCC
Q 024200 57 PRKLVECRICQDEDADS---NMETPCSCCGSLKYAHRRCVQRWCNEKG------NTTCEICQQQFKPGYTAPP 120 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~---~Li~PC~C~GSlk~vH~~CL~rWi~~kg------~~~CEICk~~y~~~yt~p~ 120 (271)
.+.++.||||+..++|+ .++.||.|+|+.||||+.||.+|+++|. ...|.+|+++|...|+...
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~ 89 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLG 89 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccC
Confidence 34678999999998876 4899999999999999999999999973 5799999999998876543
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.46 E-value=3.1e-14 Score=146.25 Aligned_cols=58 Identities=41% Similarity=1.015 Sum_probs=52.5
Q ss_pred CCeeeEeccCC-CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc--cccc
Q 024200 60 LVECRICQDED-ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK--PGYT 117 (271)
Q Consensus 60 ~~~CRIC~e~~-~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~--~~yt 117 (271)
...||||+.++ .+++|.+||+|+||.||+|++||..|...+++++|+|||++|+ ..|+
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~ 72 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYK 72 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecc
Confidence 47999999886 6789999999999999999999999999999999999999874 4564
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.49 E-value=4.9e-05 Score=51.61 Aligned_cols=41 Identities=32% Similarity=0.970 Sum_probs=31.5
Q ss_pred eeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 024200 62 ECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 109 (271)
Q Consensus 62 ~CRIC~e~~~--~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk 109 (271)
.|-||+++.. +.....||. +..|.+|+++|++.++ +|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 6889999853 334566653 8999999999998864 999995
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00071 Score=65.52 Aligned_cols=48 Identities=25% Similarity=0.744 Sum_probs=40.0
Q ss_pred CeeeEeccCCCCCC--cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 61 VECRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 61 ~~CRIC~e~~~~~~--Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
..|-||+|+..++. -+.||+ +..|..|+..|+... .+.|++||+.-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 79999999976543 479998 789999999999987 4679999996543
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.85 E-value=0.0011 Score=59.60 Aligned_cols=50 Identities=20% Similarity=0.611 Sum_probs=39.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--------------hCCccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--------------KGNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--------------kg~~~CEICk~~y~ 113 (271)
++...|-||++... .+.+++|. +.....||.+|+.. ++...|++|+..+.
T Consensus 16 ~~~~~CpICld~~~-dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVR-DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCC-CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 45689999998764 47788886 78899999999863 23568999999874
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.83 E-value=0.00098 Score=43.11 Aligned_cols=44 Identities=32% Similarity=0.882 Sum_probs=33.3
Q ss_pred eeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccc
Q 024200 62 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ 111 (271)
Q Consensus 62 ~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~ 111 (271)
.|-||++...+.....||. +..|..|+.+|+.. +...|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4789988764333455676 57899999999986 66789999875
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.67 E-value=0.0013 Score=60.62 Aligned_cols=48 Identities=31% Similarity=0.726 Sum_probs=36.7
Q ss_pred CCCeeeEeccCCCCCC-------cccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDADSN-------METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~-------Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
...+|-||++...+.+ ...||. +..|..|+.+|+..+ .+|++|+.+|.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEee
Confidence 4579999999743321 345665 789999999998754 58999999885
No 14
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0017 Score=62.27 Aligned_cols=49 Identities=31% Similarity=0.657 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHH-HhCCccccccccccc
Q 024200 58 RKLVECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCN-EKGNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~--~~~~Li~PC~C~GSlk~vH~~CL~rWi~-~kg~~~CEICk~~y~ 113 (271)
...++|-||.+.. .+.-++.||+ +-.|..|+.+|+. .|. +|+.|+.+..
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~~--~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYSN--KCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhcc--cCCccCCCCC
Confidence 4569999998875 2346799998 7899999999998 443 8999998764
No 15
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0047 Score=60.73 Aligned_cols=48 Identities=31% Similarity=0.765 Sum_probs=37.9
Q ss_pred CCCCeeeEeccCCC--C----------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024200 58 RKLVECRICQDEDA--D----------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (271)
Q Consensus 58 ~~~~~CRIC~e~~~--~----------~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (271)
+....|-||.++.- + .+-..||. +..|..||+.|+..++ +|+||+.+.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCcc
Confidence 45679999998831 1 13467887 7899999999998766 899999884
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.08 E-value=0.0033 Score=41.61 Aligned_cols=41 Identities=29% Similarity=0.873 Sum_probs=34.5
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 024200 63 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108 (271)
Q Consensus 63 CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEIC 108 (271)
|.||++...+.....||. +.+...|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 778988776544589987 78999999999998888899987
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.06 E-value=0.0056 Score=38.04 Aligned_cols=39 Identities=38% Similarity=0.997 Sum_probs=30.0
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 024200 63 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108 (271)
Q Consensus 63 CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEIC 108 (271)
|.||++.. ......||. +..|..|+.+|++ ++...|++|
T Consensus 1 C~iC~~~~-~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888773 346678877 5689999999998 556678876
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.95 E-value=0.0038 Score=43.47 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=35.9
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
...|.||++... ..+..||+ +. +-..|+.+|.+ +...|++|+++++
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC-ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 357999998754 36788997 45 88999999999 6679999998875
No 19
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.84 E-value=0.0052 Score=46.57 Aligned_cols=41 Identities=29% Similarity=0.891 Sum_probs=29.0
Q ss_pred eeeEeccCCCC-----------CC-cccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 024200 62 ECRICQDEDAD-----------SN-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 109 (271)
Q Consensus 62 ~CRIC~e~~~~-----------~~-Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk 109 (271)
.|-||+++..+ -+ ...+|+ +..|..||.+|++.+. +|++|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 49999887521 11 234664 7899999999997655 999995
No 20
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.68 E-value=0.0039 Score=47.06 Aligned_cols=52 Identities=25% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCeeeEeccCCC-CC-C---cccccccCCCCccccHHHHHHHHHHh-C--------Ccccccccccccc
Q 024200 60 LVECRICQDEDA-DS-N---METPCSCCGSLKYAHRRCVQRWCNEK-G--------NTTCEICQQQFKP 114 (271)
Q Consensus 60 ~~~CRIC~e~~~-~~-~---Li~PC~C~GSlk~vH~~CL~rWi~~k-g--------~~~CEICk~~y~~ 114 (271)
...|.||++... ++ . +-..+.|. +..|..||.+|+... + .-.|+.|+.+.+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 457999987642 21 1 23335674 789999999999863 1 1369999988764
No 21
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.029 Score=53.32 Aligned_cols=55 Identities=29% Similarity=0.845 Sum_probs=44.5
Q ss_pred CCCCCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 53 DISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 53 ~~~~~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
+...+.....|-+|++.-. ++-.+||. +..=-.|++.|+++|.. |++|+.+++|.
T Consensus 232 ~~~i~~a~~kC~LCLe~~~-~pSaTpCG-----HiFCWsCI~~w~~ek~e--CPlCR~~~~ps 286 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRS-NPSATPCG-----HIFCWSCILEWCSEKAE--CPLCREKFQPS 286 (293)
T ss_pred CccCCCCCCceEEEecCCC-CCCcCcCc-----chHHHHHHHHHHccccC--CCcccccCCCc
Confidence 4456677799999998864 36689998 56667999999999874 99999999763
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.011 Score=59.71 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=38.7
Q ss_pred CCCeeeEeccCCCCC----CcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024200 59 KLVECRICQDEDADS----NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~----~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (271)
....|.||.|+.... +-..||. +..|..||++|++.+ .+|++|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhhh
Confidence 467999999986443 5678887 799999999999984 4999999944
No 23
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.28 E-value=0.013 Score=46.54 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=35.6
Q ss_pred CCeeeEeccCCC-----------CCCcccccccCCCCccccHHHHHHHHHHh-CCcccccccccccc
Q 024200 60 LVECRICQDEDA-----------DSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKP 114 (271)
Q Consensus 60 ~~~CRIC~e~~~-----------~~~Li~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEICk~~y~~ 114 (271)
...|-||....+ +-+++ =+.|. +..|..|+.+|++.. .+..|++|+++|+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 346777766543 22222 24563 789999999999974 46799999999864
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=95.17 E-value=0.018 Score=53.19 Aligned_cols=60 Identities=22% Similarity=0.567 Sum_probs=43.4
Q ss_pred CCCCCeeeEeccCCC------C--CCcccccccCCCCccccHHHHHHHHHHh----CCcccccccccccccccCCCCcc
Q 024200 57 PRKLVECRICQDEDA------D--SNMETPCSCCGSLKYAHRRCVQRWCNEK----GNTTCEICQQQFKPGYTAPPPLF 123 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~------~--~~Li~PC~C~GSlk~vH~~CL~rWi~~k----g~~~CEICk~~y~~~yt~p~~~~ 123 (271)
.+...+|-||+|.-- + -.+..+|. +.....|+.+|.+.+ ....|++|+..|. +..|.+.|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSrf~ 238 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSKFY 238 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccccce
Confidence 356789999998732 1 13566776 778999999999864 2467999999986 44555554
No 25
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.88 E-value=0.066 Score=37.99 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=36.3
Q ss_pred CeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 61 VECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 61 ~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
-.|.||.+...+ +...||. +..-+.|+.+|++. +.+|++|+.++.
T Consensus 2 ~~Cpi~~~~~~~-Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD-PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC-CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 368899887654 7888874 67899999999987 458999998874
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.054 Score=55.05 Aligned_cols=55 Identities=25% Similarity=0.593 Sum_probs=40.9
Q ss_pred CCCCCCCCCeeeEeccCCC----------------CCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 53 DISTPRKLVECRICQDEDA----------------DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 53 ~~~~~~~~~~CRIC~e~~~----------------~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
++...+....|-||...-+ .+.+.+||. +..|+.||++|.+.-+ ..|+.|+.+..
T Consensus 564 ~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLP 634 (636)
T KOG0828|consen 564 LEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLP 634 (636)
T ss_pred ccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence 3444566789999976521 135778998 7899999999998432 68999987764
No 27
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=93.66 E-value=0.029 Score=37.13 Aligned_cols=38 Identities=34% Similarity=0.922 Sum_probs=29.0
Q ss_pred eeEeccCCCCCC-cccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 024200 63 CRICQDEDADSN-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 108 (271)
Q Consensus 63 CRIC~e~~~~~~-Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEIC 108 (271)
|-||++...+ + ...||. +...+.|+++|++. +.+|++|
T Consensus 1 C~iC~~~~~~-~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC-cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 6789877654 5 578887 78999999999987 3689887
No 28
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.79 E-value=0.049 Score=59.01 Aligned_cols=53 Identities=25% Similarity=0.715 Sum_probs=38.0
Q ss_pred CCCCeeeEeccCCC--CCCc-ccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 58 RKLVECRICQDEDA--DSNM-ETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~~--~~~L-i~PC~-C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
+...+|-||..--. +..+ -.-|. |+ .-.|-.||-+|++++++..|++|+.++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45689999975421 2222 12332 33 4689999999999999999999997764
No 29
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.24 Score=45.82 Aligned_cols=52 Identities=21% Similarity=0.616 Sum_probs=41.7
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhC-Cccccccccccc
Q 024200 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKG-NTTCEICQQQFK 113 (271)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg-~~~CEICk~~y~ 113 (271)
.++..-.|-||++...| +.+++|. +..==.||-+|+..+. ...|++||....
T Consensus 43 ~~~~~FdCNICLd~akd-PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD-PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCCceeeeeeccccCC-CEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccc
Confidence 45678899999998765 8999997 4555589999998865 567899998764
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=90.74 E-value=0.17 Score=34.36 Aligned_cols=42 Identities=21% Similarity=0.610 Sum_probs=34.2
Q ss_pred eeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 024200 62 ECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 110 (271)
Q Consensus 62 ~CRIC~e~~--~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~ 110 (271)
.|-||++.. +..+++.+|. +.+..+|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 377898886 3346899997 789999999998 66789999974
No 31
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.59 E-value=0.25 Score=48.97 Aligned_cols=49 Identities=22% Similarity=0.530 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.....|.||++... .+.+.||. +.....|+.+|+..+ ..|++|+..+..
T Consensus 24 e~~l~C~IC~d~~~-~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD-VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh-CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 45679999988764 46778987 678889999999764 389999998753
No 32
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=0.29 Score=48.66 Aligned_cols=45 Identities=31% Similarity=0.827 Sum_probs=32.2
Q ss_pred CCeeeEeccCCC-CCCc--ccccccCCCCccccHHHHHHHHHHhCC-ccccccc
Q 024200 60 LVECRICQDEDA-DSNM--ETPCSCCGSLKYAHRRCVQRWCNEKGN-TTCEICQ 109 (271)
Q Consensus 60 ~~~CRIC~e~~~-~~~L--i~PC~C~GSlk~vH~~CL~rWi~~kg~-~~CEICk 109 (271)
...|.||-+... +.++ +.-|. +..|..||++|+..-.. +.|+||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 568999944332 2233 33344 68999999999987654 7999999
No 33
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.06 E-value=0.13 Score=40.52 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=35.7
Q ss_pred eeeEeccCCC-----------CCCcccccccCCCCccccHHHHHHHHHHhC-Ccccccccccccc
Q 024200 62 ECRICQDEDA-----------DSNMETPCSCCGSLKYAHRRCVQRWCNEKG-NTTCEICQQQFKP 114 (271)
Q Consensus 62 ~CRIC~e~~~-----------~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg-~~~CEICk~~y~~ 114 (271)
.|-||..+.+ +-+|+-- .| .+..|..|+.+|++.+. ...|++|+++|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C---~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YC---LHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HH---HHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 7778876542 2355433 44 37899999999999864 4689999999864
No 34
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=85.66 E-value=0.49 Score=37.61 Aligned_cols=27 Identities=30% Similarity=0.728 Sum_probs=24.1
Q ss_pred ccccHHHHHHHHHHhCCcccccccccccc
Q 024200 86 KYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 86 k~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+..|..|+.||++.++ .|++++++|+.
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 6789999999999977 89999999863
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.20 E-value=0.31 Score=49.09 Aligned_cols=47 Identities=19% Similarity=0.617 Sum_probs=34.2
Q ss_pred CCCCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024200 57 PRKLVECRICQDEDAD---SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~---~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (271)
..+.+.|-+|+|..++ +.+-.+|. +-.|-.|+++|-+. +|++|++--
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q 221 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQ 221 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhc
Confidence 4678999999998543 34556665 67899999999765 566665443
No 36
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=84.12 E-value=0.57 Score=40.14 Aligned_cols=41 Identities=34% Similarity=0.611 Sum_probs=28.7
Q ss_pred CCCCeeeEeccCCCC--CCcccccccCCCC---ccccHHHHHHHHHHh
Q 024200 58 RKLVECRICQDEDAD--SNMETPCSCCGSL---KYAHRRCVQRWCNEK 100 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~--~~Li~PC~C~GSl---k~vH~~CL~rWi~~k 100 (271)
....+|+||++.-.+ +-..-+|. |.+ |..|..|++||-+++
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~--g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDG--GTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecC--CeehHHHHHHHHHHHHHHhhc
Confidence 346799999988443 44555554 443 569999999996554
No 37
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=83.95 E-value=0.4 Score=47.99 Aligned_cols=48 Identities=27% Similarity=0.750 Sum_probs=38.9
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
-..|.||-|.+.+ .-+-||. +..-..||-.|..+.+...|+.|+.+.+
T Consensus 369 FeLCKICaendKd-vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKD-VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCC-ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 4689999777654 4478987 5666799999999988899999998875
No 38
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.66 E-value=0.8 Score=39.45 Aligned_cols=55 Identities=29% Similarity=0.694 Sum_probs=44.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
..-+|-||+|.+.|..+..|=.|-|. +.---=|.+-|--.+---.|++||+.|+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 56799999999888889999999883 34444567888877777899999999975
No 39
>PLN02189 cellulose synthase
Probab=83.11 E-value=0.82 Score=50.21 Aligned_cols=51 Identities=27% Similarity=0.664 Sum_probs=38.1
Q ss_pred CCCeeeEeccCC---CCCCcccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDED---ADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~---~~~~Li~PC~-C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
....|+||-++- .++.+.-.|+ |. --|=+.|. ..-.+.|+..|+.||++|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 445999998873 3566777887 62 33778998 4445568899999999997
No 40
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=81.37 E-value=6.6 Score=32.27 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhceee---cCCCCCchHHHHHHHHHHhhhHHHHHHHH
Q 024200 180 IALIFVFLLILRHTLPVIL---SRTNDYSFPIFLQLFLRTAGIVLPIYVMV 227 (271)
Q Consensus 180 ~aii~m~lLllrh~l~~~~---~~~~~~s~~lf~l~~Lr~aGillP~yi~~ 227 (271)
..++++++++++-++.+.. ..-|-|+|.++++++-=.|.+.-|+..|.
T Consensus 6 Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 6 FIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555543 24588999999988888888888775554
No 41
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=80.71 E-value=1.3 Score=31.75 Aligned_cols=45 Identities=22% Similarity=0.598 Sum_probs=20.0
Q ss_pred eeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHh--CCccccccccccc
Q 024200 63 CRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEICQQQFK 113 (271)
Q Consensus 63 CRIC~e~~~-~~~Li~PC~C~GSlk~vH~~CL~rWi~~k--g~~~CEICk~~y~ 113 (271)
|.+|-++.+ ...-..||.|. ++-|+.=|.+-+ ++-.|+-|+.+|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 456665542 23457899994 346666676654 4789999999984
No 42
>PLN02436 cellulose synthase A
Probab=79.40 E-value=1.3 Score=48.86 Aligned_cols=51 Identities=29% Similarity=0.701 Sum_probs=38.1
Q ss_pred CCCeeeEeccC---CCCCCcccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDE---DADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~---~~~~~Li~PC~-C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
...+|+||-++ ..++.+.--|+ |. --|=+.|. ..-.+.|+..|+.||++|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 44699999887 34567777777 52 23778998 4445568899999999997
No 43
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.20 E-value=2.6 Score=41.26 Aligned_cols=50 Identities=26% Similarity=0.551 Sum_probs=32.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
++..++|=||+.+..+ -++.||+= -..=..|.+...- +...|+||++.+.
T Consensus 287 ~~~gkeCVIClse~rd-t~vLPCRH----LCLCs~Ca~~Lr~--q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 287 SESGKECVICLSESRD-TVVLPCRH----LCLCSGCAKSLRY--QTNNCPICRQPIE 336 (349)
T ss_pred ccCCCeeEEEecCCcc-eEEecchh----hehhHhHHHHHHH--hhcCCCccccchH
Confidence 3568999999988754 56677651 1122357665542 3458999999875
No 44
>COG4420 Predicted membrane protein [Function unknown]
Probab=77.36 E-value=6.1 Score=35.80 Aligned_cols=49 Identities=29% Similarity=0.437 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhhceee---cCCCCCchHHHHHHHHHHhhhHHHHHHHH
Q 024200 179 SIALIFVFLLILRHTLPVIL---SRTNDYSFPIFLQLFLRTAGIVLPIYVMV 227 (271)
Q Consensus 179 s~aii~m~lLllrh~l~~~~---~~~~~~s~~lf~l~~Lr~aGillP~yi~~ 227 (271)
...+.|.++|+++-.+.+.+ ..-+.|+|.++-+++.-.|.|--|+..|.
T Consensus 59 ~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 59 AFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 55677888888888888753 23488999999999888899988887665
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.39 E-value=2.8 Score=45.28 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=25.2
Q ss_pred ccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 76 ETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 76 i~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
..+|.| |.|..|+..|.+.-+ +|++|..+|-
T Consensus 141 ~k~c~H-----~FC~~Ci~sWsR~aq--TCPiDR~EF~ 171 (1134)
T KOG0825|consen 141 EKHTAH-----YFCEECVGSWSRCAQ--TCPVDRGEFG 171 (1134)
T ss_pred cccccc-----ccHHHHhhhhhhhcc--cCchhhhhhh
Confidence 345665 999999999987655 8999999994
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.38 E-value=2.1 Score=41.56 Aligned_cols=50 Identities=30% Similarity=0.579 Sum_probs=35.2
Q ss_pred CCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHh---------------------CCcccccccccccc
Q 024200 60 LVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEK---------------------GNTTCEICQQQFKP 114 (271)
Q Consensus 60 ~~~CRIC~e~~~~~--~Li~PC~C~GSlk~vH~~CL~rWi~~k---------------------g~~~CEICk~~y~~ 114 (271)
...|-||+-..-++ -.+++|- +|.|-.||.|++++- -...|++|....+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35666666554333 4578887 899999999998641 14579999987653
No 47
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=71.05 E-value=2.8 Score=34.83 Aligned_cols=26 Identities=19% Similarity=0.666 Sum_probs=23.0
Q ss_pred ccccHHHHHHHHHHhCCccccccccccc
Q 024200 86 KYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 86 k~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
+-.|.-|+.||++.++ .|++|.+++.
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCccee
Confidence 6789999999998876 8999999875
No 48
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=71.04 E-value=2 Score=29.28 Aligned_cols=40 Identities=30% Similarity=0.687 Sum_probs=26.2
Q ss_pred eeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCC--cccccc
Q 024200 63 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGN--TTCEIC 108 (271)
Q Consensus 63 CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~--~~CEIC 108 (271)
|-||++-.. ++...+|. +-.=+.||.+|.++.+. ..|++|
T Consensus 1 CpiC~~~~~-~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 667876654 47778886 56778999999987654 588887
No 49
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=68.98 E-value=2.5 Score=29.30 Aligned_cols=39 Identities=23% Similarity=0.670 Sum_probs=20.7
Q ss_pred eeEeccCCC-C-CCcccccccCCCCccccHHHHHHHHHHh--CCcccc
Q 024200 63 CRICQDEDA-D-SNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCE 106 (271)
Q Consensus 63 CRIC~e~~~-~-~~Li~PC~C~GSlk~vH~~CL~rWi~~k--g~~~CE 106 (271)
|-||.+-.+ + .+++.||. +-+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 567777322 2 26889977 578899999999975 456663
No 50
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.12 E-value=2.5 Score=36.10 Aligned_cols=45 Identities=24% Similarity=0.654 Sum_probs=36.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 110 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~ 110 (271)
.+...|.||++...+. .+.||. +..=+.|+..|.. ....|+.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p-~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP-VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC-cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4678999999987653 788887 6677799999988 7789999994
No 51
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=67.56 E-value=6.3 Score=43.76 Aligned_cols=52 Identities=27% Similarity=0.607 Sum_probs=33.8
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~---~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
....|+||-++- .++.+.--|+=.| --|=+.|.+- =...|+..|+.||++|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCYEY-Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCYEY-ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC--Cccccchhhh-hhhcCCccCCccCCchh
Confidence 445999998873 3455443443211 2366788743 23358899999999997
No 52
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=66.54 E-value=3.1 Score=31.13 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=31.2
Q ss_pred CeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 61 VECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 61 ~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
-.|-|+.+-.. .+.+.||. +..=+.|+++|++. +...|++|+.....
T Consensus 5 f~CpIt~~lM~-dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 5 FLCPITGELMR-DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GB-TTTSSB-S-SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred cCCcCcCcHhh-CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 35667765554 37777754 68899999999997 55799999877653
No 53
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.35 E-value=6.6 Score=37.93 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=35.2
Q ss_pred CeeeEeccCCCCC----CcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 61 VECRICQDEDADS----NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 61 ~~CRIC~e~~~~~----~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
..|-+|....-.+ -++++|. +-.=..|+.+.+. ++...|+.|+..++..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccchh
Confidence 4799998864222 2677775 5566799999764 3667999999888653
No 54
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=63.22 E-value=4.6 Score=42.02 Aligned_cols=56 Identities=27% Similarity=0.700 Sum_probs=44.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccccccccCC
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKPGYTAP 119 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y~~~yt~p 119 (271)
.+..+|-+|+++.++ .+++-|+ +-.-+.|+..++.. +.+.+|+.|.-.....-+.|
T Consensus 534 k~~~~C~lc~d~aed-~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED-YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred cCceeecccCChhhh-hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 457899999998764 7788887 45667899999875 45799999998887766555
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.19 E-value=7.3 Score=39.24 Aligned_cols=49 Identities=20% Similarity=0.610 Sum_probs=35.9
Q ss_pred CCeeeEeccCCC---CCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024200 60 LVECRICQDEDA---DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (271)
Q Consensus 60 ~~~CRIC~e~~~---~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (271)
...|-||+++-. +..++.| .| -+.....|+++|+-.+-...|++|+.+-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl-~c---ghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSL-QC---GHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeee-cc---cccccHHHHHHHHhhhhhhhCcccCChh
Confidence 458999999842 3346655 33 2578899999999755677899998763
No 56
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=60.03 E-value=4.1 Score=39.57 Aligned_cols=47 Identities=23% Similarity=0.561 Sum_probs=35.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
..-.||||.+--. -++++||. +-.-.-|+.+.++... .|++|.+++.
T Consensus 24 s~lrC~IC~~~i~-ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRIS-IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheee-cceecccc-----cchhHHHHHHHhcCCC--CCccccccHH
Confidence 4678999977653 47889987 3455678888887654 8999998874
No 57
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=59.91 E-value=3.1 Score=32.02 Aligned_cols=32 Identities=25% Similarity=0.680 Sum_probs=23.6
Q ss_pred CCCeeeEeccCCCCCC-cccccccCCCCccccHHHHHH
Q 024200 59 KLVECRICQDEDADSN-METPCSCCGSLKYAHRRCVQR 95 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~-Li~PC~C~GSlk~vH~~CL~r 95 (271)
....|.+|...-..+. .+.||. ..+|..|++|
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 3457999988865444 467875 6899999864
No 58
>PLN02195 cellulose synthase A
Probab=59.61 E-value=8.1 Score=42.53 Aligned_cols=52 Identities=17% Similarity=0.452 Sum_probs=33.3
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~---~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
....|+||-++- .++.+---|+=.| --|=+.|.+- =+..|+..|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~--~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS--YPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC--Cccccchhhh-hhhcCCccCCccCCccc
Confidence 345899998763 2344433343211 2366788743 33458899999999998
No 59
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.25 E-value=3.5 Score=39.54 Aligned_cols=51 Identities=20% Similarity=0.622 Sum_probs=37.2
Q ss_pred CCCCeeeEeccCC-----CCC----CcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 58 RKLVECRICQDED-----ADS----NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~-----~~~----~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
.+...|-+|-..- +++ .-..-|+ +-.|+-|+.-|+--.+..+|+-||.+-.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4556899996541 222 2234454 6899999999999888889999998764
No 60
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=55.29 E-value=16 Score=30.16 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024200 223 IYVMVKAVTALQRHRYQQ 240 (271)
Q Consensus 223 ~yi~~~ai~~~q~~r~~~ 240 (271)
++|++-.+..+-|||+|.
T Consensus 12 i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 12 ILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333333333344444443
No 61
>PLN02400 cellulose synthase
Probab=55.18 E-value=9.2 Score=42.55 Aligned_cols=52 Identities=21% Similarity=0.576 Sum_probs=32.9
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~---~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
...+|+||-++- .++.+.--|+=.| --|=+.|.+- =..-|+..|+.||++|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCYEY-ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCYEY-ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC--Cccccchhhe-ecccCCccCcccCCccc
Confidence 456999998873 3455433343111 2266688632 23347899999999998
No 62
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=52.28 E-value=7.9 Score=26.65 Aligned_cols=22 Identities=23% Similarity=0.742 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHHhCCcccccc
Q 024200 87 YAHRRCVQRWCNEKGNTTCEIC 108 (271)
Q Consensus 87 ~vH~~CL~rWi~~kg~~~CEIC 108 (271)
-.|..|++++++.+.+.+|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3999999999998877789877
No 63
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=51.95 E-value=13 Score=36.67 Aligned_cols=35 Identities=23% Similarity=0.704 Sum_probs=26.6
Q ss_pred ccccccCCCCccccHHHHHHHHHHh-----------CCccccccccccc
Q 024200 76 ETPCSCCGSLKYAHRRCVQRWCNEK-----------GNTTCEICQQQFK 113 (271)
Q Consensus 76 i~PC~C~GSlk~vH~~CL~rWi~~k-----------g~~~CEICk~~y~ 113 (271)
-.+|.|+- --=..|+-||+.++ |+-.|+.|+.+|=
T Consensus 306 C~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 306 CQQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred Cccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 56788862 33468999999875 4678999999884
No 64
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=51.02 E-value=17 Score=28.77 Aligned_cols=53 Identities=25% Similarity=0.552 Sum_probs=22.1
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~---~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
....|.||-+.- .++.+..-|.=- ---+=+.|.+-=.+ -|+..|..||++|+-
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC--~fPvCr~CyEYErk-eg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHEC--AFPVCRPCYEYERK-EGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHHH-TS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEccc--CCccchhHHHHHhh-cCcccccccCCCccc
Confidence 467899998773 344444444321 13477888776554 377899999999974
No 65
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=50.59 E-value=15 Score=40.75 Aligned_cols=54 Identities=28% Similarity=0.690 Sum_probs=34.7
Q ss_pred CCCCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 57 PRKLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 57 ~~~~~~CRIC~e~~---~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
+-...+|.||-++- .++.+.--|+=.| --|=+.|.+ .=...|+..|+.||++|+
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~--fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCG--FPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCC--Cccccchhh-hhhhcCCccCCccCCchh
Confidence 34567999998773 2344433343211 236678873 333458899999999998
No 66
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=50.31 E-value=6 Score=39.13 Aligned_cols=47 Identities=28% Similarity=0.565 Sum_probs=36.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
..-.|-||++=.. -+++.||. +-.-.-|+...++.+. .|+.|..+|.
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCs-----HtfCSlCIR~~L~~~p--~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCS-----HTFCSLCIRKFLSYKP--QCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc-Cceecccc-----chHHHHHHHHHhccCC--CCCceecccc
Confidence 3468999988764 48999986 3455678888887754 8999998875
No 67
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.75 E-value=34 Score=30.96 Aligned_cols=51 Identities=18% Similarity=0.510 Sum_probs=34.2
Q ss_pred CCCCCCCeeeEeccCCCCC-CcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024200 55 STPRKLVECRICQDEDADS-NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (271)
Q Consensus 55 ~~~~~~~~CRIC~e~~~~~-~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (271)
...+...-|-||++...+. +.-+-|. +..=.+|++.-++ ...+|++|+.+.
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk--~~~~CP~C~kkI 177 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALK--NTNKCPTCRKKI 177 (187)
T ss_pred cccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHH--hCCCCCCccccc
Confidence 3445558899999987643 3335554 4555688777664 456999999754
No 68
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=21 Score=35.04 Aligned_cols=50 Identities=18% Similarity=0.549 Sum_probs=35.3
Q ss_pred CCCCeeeEeccCCCCCC-----c-c-cccccCCCCccccHHHHHHHHHHhC-----Ccccccccccc
Q 024200 58 RKLVECRICQDEDADSN-----M-E-TPCSCCGSLKYAHRRCVQRWCNEKG-----NTTCEICQQQF 112 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~-----L-i-~PC~C~GSlk~vH~~CL~rWi~~kg-----~~~CEICk~~y 112 (271)
...+.|=||.+...+.. + + .+|. +..=.+|+.+|-..+. ...|++|+..-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45789999998854322 2 2 3455 4455689999997665 68999998653
No 69
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=41.31 E-value=11 Score=25.11 Aligned_cols=18 Identities=17% Similarity=0.619 Sum_probs=13.6
Q ss_pred cccccccccccccccCCC
Q 024200 103 TTCEICQQQFKPGYTAPP 120 (271)
Q Consensus 103 ~~CEICk~~y~~~yt~p~ 120 (271)
+.|+.|+..|...|..|+
T Consensus 2 r~C~~Cg~~Yh~~~~pP~ 19 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPK 19 (36)
T ss_dssp EEETTTTEEEETTTB--S
T ss_pred cCcCCCCCccccccCCCC
Confidence 479999999998776654
No 70
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=40.96 E-value=14 Score=37.30 Aligned_cols=47 Identities=26% Similarity=0.697 Sum_probs=37.6
Q ss_pred CCCeeeEeccCCC--CCCc-ccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 024200 59 KLVECRICQDEDA--DSNM-ETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 110 (271)
Q Consensus 59 ~~~~CRIC~e~~~--~~~L-i~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~ 110 (271)
.+-.|-.|-+.-. ++.| -.||+ +..|.+|++..+..++++.|+-|+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4567889976632 2344 68998 7999999999999899999999993
No 71
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=40.50 E-value=31 Score=30.45 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HhhcC
Q 024200 220 VLPIYVMVKAVTALQRHR--YQQVS 242 (271)
Q Consensus 220 llP~yi~~~ai~~~q~~r--~~~~~ 242 (271)
++-.|+++|+++.-.+.| |+|+.
T Consensus 107 l~i~yfvir~~R~r~~~rktRkYgv 131 (163)
T PF06679_consen 107 LAILYFVIRTFRLRRRNRKTRKYGV 131 (163)
T ss_pred HHHHHHHHHHHhhccccccceeecc
Confidence 444899999987554323 45543
No 72
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.13 E-value=58 Score=32.35 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q 024200 208 IFLQLFLRTAGIVLPIYVMVK 228 (271)
Q Consensus 208 lf~l~~Lr~aGillP~yi~~~ 228 (271)
+|.|.++|++.|+| +||+..
T Consensus 232 IlvLaIvRlILF~I-~~il~~ 251 (372)
T KOG2927|consen 232 ILVLAIVRLILFGI-TWILTG 251 (372)
T ss_pred HHHHHHHHHHHHHH-HHHHhC
Confidence 45566888887766 666655
No 73
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=38.04 E-value=30 Score=37.85 Aligned_cols=53 Identities=25% Similarity=0.579 Sum_probs=39.0
Q ss_pred CCCCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHHHh-----CCccccccccccc
Q 024200 57 PRKLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCNEK-----GNTTCEICQQQFK 113 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~--~~~Li~PC~C~GSlk~vH~~CL~rWi~~k-----g~~~CEICk~~y~ 113 (271)
.+...+|-||.+.-. ...| +|+.=.+..|..|+++|-..+ ..+.|+-|++.++
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 356689999998853 2333 233335789999999999764 3689999997775
No 74
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.28 E-value=29 Score=35.75 Aligned_cols=49 Identities=24% Similarity=0.600 Sum_probs=34.5
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKP 114 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y~~ 114 (271)
...|-||+++..- +..+-|. +..=-.||.+..+. ++-..|+||...+.+
T Consensus 186 ~~~CPICL~~~~~-p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc-ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6899999998754 3333354 44555788777665 367899999988765
No 75
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.21 E-value=72 Score=30.23 Aligned_cols=50 Identities=20% Similarity=0.516 Sum_probs=34.7
Q ss_pred CCCCeeeEeccCCCCCC-cccccccCCCCccccHHHHHHHHHHh------CCcccccccccc
Q 024200 58 RKLVECRICQDEDADSN-METPCSCCGSLKYAHRRCVQRWCNEK------GNTTCEICQQQF 112 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~-Li~PC~C~GSlk~vH~~CL~rWi~~k------g~~~CEICk~~y 112 (271)
....-||.|...-.++. ...-| ....|-+||..|-..= ....|+-|.++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvC-----yhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVC-----YHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCcceeehh-----hhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 46678999976643332 22233 3789999999998652 356899999875
No 76
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.20 E-value=42 Score=32.05 Aligned_cols=52 Identities=25% Similarity=0.613 Sum_probs=38.3
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHH-HHHHhCCcccccccccccc
Q 024200 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQR-WCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~r-Wi~~kg~~~CEICk~~y~~ 114 (271)
.+.....|-||.+..+ .+.-+||. +..=-.||.. |...+ ...|++|+..-.|
T Consensus 211 ip~~d~kC~lC~e~~~-~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~p 263 (271)
T COG5574 211 IPLADYKCFLCLEEPE-VPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVYP 263 (271)
T ss_pred ccccccceeeeecccC-Cccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhccc
Confidence 3455678999988765 36788887 5666789888 87754 3579999987544
No 78
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=31.32 E-value=30 Score=31.15 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024200 220 VLPIYVMVKAVTALQRHRYQQ 240 (271)
Q Consensus 220 llP~yi~~~ai~~~q~~r~~~ 240 (271)
.+|-.+++-.+..+||||+++
T Consensus 162 yiPAlLLL~lv~~lQrRR~~~ 182 (183)
T PF11874_consen 162 YIPALLLLGLVAWLQRRRRRK 182 (183)
T ss_pred eHHHHHHHHHHHHHhhhhccC
Confidence 456666667777899999775
No 79
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.95 E-value=92 Score=29.50 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHhhhHH
Q 024200 206 FPIFLQLFLRTAGIVL 221 (271)
Q Consensus 206 ~~lf~l~~Lr~aGill 221 (271)
.+|=++++|-.+||++
T Consensus 236 iALG~v~ll~l~Gii~ 251 (281)
T PF12768_consen 236 IALGTVFLLVLIGIIL 251 (281)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666677665
No 80
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=29.36 E-value=21 Score=19.72 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=7.2
Q ss_pred ccccccccccc
Q 024200 104 TCEICQQQFKP 114 (271)
Q Consensus 104 ~CEICk~~y~~ 114 (271)
.|++|+..|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 69999998864
No 81
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=29.03 E-value=46 Score=31.52 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=36.6
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHHHhhhceee-cCCCCCchHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024200 165 EYSASNTRSMICCRSIALIFVFLLILRHTLPVIL-SRTNDYSFPIFLQLFLRTAGIVLPIYVMVKAVT 231 (271)
Q Consensus 165 ~~~~~~~~~~~~cRs~aii~m~lLllrh~l~~~~-~~~~~~s~~lf~l~~Lr~aGillP~yi~~~ai~ 231 (271)
+|.-.+.-|..|.|.-+|+|.+|-++=-++++.+ .|+-.|+...--++++=+..||+-++.++|+++
T Consensus 182 HCrKvSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 182 HCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIY 249 (256)
T ss_pred CCceeccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhe
Confidence 3444444455688888888777766655555542 444333322211233333445666777778765
No 82
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=28.87 E-value=77 Score=28.18 Aligned_cols=39 Identities=23% Similarity=0.546 Sum_probs=25.6
Q ss_pred CCeeeEeccCCCC---------CCcccccccCCCCccccHHHHHHHHHHh
Q 024200 60 LVECRICQDEDAD---------SNMETPCSCCGSLKYAHRRCVQRWCNEK 100 (271)
Q Consensus 60 ~~~CRIC~e~~~~---------~~Li~PC~C~GSlk~vH~~CL~rWi~~k 100 (271)
...|-||.|---. ..--.|=-|. ..|-|..||.+..+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~--Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCD--TSYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccC--CccchhHHHHHHHHHh
Confidence 4689999876421 1112333365 4688999999998753
No 83
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=27.57 E-value=3.5e+02 Score=22.27 Aligned_cols=62 Identities=16% Similarity=0.366 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhceeec-CCCCCchHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 024200 174 MICCRSIALIFVFLLILRHTLPVILS-RTNDYSFPIFLQLFLRT-AGIVLPIYVMVKAVTALQRHR 237 (271)
Q Consensus 174 ~~~cRs~aii~m~lLllrh~l~~~~~-~~~~~s~~lf~l~~Lr~-aGillP~yi~~~ai~~~q~~r 237 (271)
+..-+.+.+++.+++.+-++-++-.+ =...+.+++...+++=+ .|.|+-++++. .+++|.||
T Consensus 26 vi~~gilillLllifav~Nt~~V~~~~lfg~~~~PLilvil~s~v~G~Li~~~~~~--~Ri~~lrr 89 (98)
T COG5416 26 VIIVGILILLLLLIFAVINTDSVEFNYLFGQWELPLILVILGAAVVGALIAMFAGI--ARILQLRR 89 (98)
T ss_pred HHHHHHHHHHHHHHHHHhccCceEEEeecchhhhhHHHHHHHHHHHHHHHHHHHhH--HHHHHHHH
Confidence 34444444444455555555555321 11236677776666655 56665544443 34555554
No 84
>COG2322 Predicted membrane protein [Function unknown]
Probab=27.56 E-value=1.6e+02 Score=26.58 Aligned_cols=55 Identities=27% Similarity=0.481 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhhhceee--cCCCCCc----hHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 024200 179 SIALIFVFLLILRHTLPVIL--SRTNDYS----FPIFLQLFLRTAGIVLPIYVMVKAVTAL 233 (271)
Q Consensus 179 s~aii~m~lLllrh~l~~~~--~~~~~~s----~~lf~l~~Lr~aGillP~yi~~~ai~~~ 233 (271)
.++++|.++-+.||-+.--. ++++.|- |-|++=..|-++++-|-.|.++++++-.
T Consensus 84 ~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 84 TLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhcch
Confidence 57788888999999776654 6666553 3444445778888888889999997754
No 85
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=26.94 E-value=70 Score=24.70 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=12.1
Q ss_pred HhhhHHHHHHHHHHH
Q 024200 216 TAGIVLPIYVMVKAV 230 (271)
Q Consensus 216 ~aGillP~yi~~~ai 230 (271)
..|+.++.||+++.+
T Consensus 45 ~~~~~ii~Yiia~~i 59 (70)
T COG1983 45 LTGFGIIAYIIAALI 59 (70)
T ss_pred chhHHHHHHHHHHHH
Confidence 457788899999885
No 86
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=26.84 E-value=21 Score=32.75 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=19.9
Q ss_pred eccCCCCC--C-cccccccCCCCccccHHH
Q 024200 66 CQDEDADS--N-METPCSCCGSLKYAHRRC 92 (271)
Q Consensus 66 C~e~~~~~--~-Li~PC~C~GSlk~vH~~C 92 (271)
|..++.+. . ...|+.|.|.+-|||+++
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~r 122 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRKR 122 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEccc
Confidence 55555432 2 379999999999999943
No 87
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=26.27 E-value=97 Score=27.05 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhceeecCCCCCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 024200 180 IALIFVFLLILRHTLPVILSRTNDYSFPIFLQLFLRTAGIVLPIYVMVKAVTALQRHR 237 (271)
Q Consensus 180 ~aii~m~lLllrh~l~~~~~~~~~~s~~lf~l~~Lr~aGillP~yi~~~ai~~~q~~r 237 (271)
..++|..||++|-++-..+++.=| .-.+-.+|++-|.|.++ -|=++.+.+-|
T Consensus 95 F~~ili~LlviR~~l~~~l~~~i~-~~~~~~mFf~lAfgmIv-----pWRiamy~kyr 146 (148)
T PF07301_consen 95 FIFILIGLLVIRIVLKSYLSGSID-PGQLSGMFFLLAFGMIV-----PWRIAMYIKYR 146 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 458889999999999998886422 22333345555665544 45555555544
No 88
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=26.26 E-value=62 Score=38.28 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=38.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh--------CCccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--------GNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~k--------g~~~CEICk~~y~ 113 (271)
.....|-||+.+.-. ..||---|--+..|..|..+-+..+ +...|+||+.+.+
T Consensus 3484 D~DDmCmICFTE~L~---AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALS---AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhC---CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 456799999987532 3566544445899999997766543 5679999998875
No 89
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=46 Score=32.57 Aligned_cols=27 Identities=22% Similarity=0.600 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHh-----------CCccccccccccc
Q 024200 87 YAHRRCVQRWCNEK-----------GNTTCEICQQQFK 113 (271)
Q Consensus 87 ~vH~~CL~rWi~~k-----------g~~~CEICk~~y~ 113 (271)
.--++||.+|+..+ |+-.|+.|+..|-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 45579999999643 6789999999885
No 90
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.01 E-value=78 Score=30.93 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccccccccccC
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFKPGYTA 118 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y~~~yt~ 118 (271)
...++|-||+.... |+-.+..-|.-|..---.. .+...|.+|.+++...+-.
T Consensus 5 ~~~~eC~IC~nt~n---------~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 5 TKKKECLICYNTGN---------CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred ccCCcceeeeccCC---------cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 35678999987653 2333444577764321111 2456799999998655443
No 91
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=24.52 E-value=38 Score=36.53 Aligned_cols=57 Identities=28% Similarity=0.575 Sum_probs=40.5
Q ss_pred CCCCeeeEeccCCCCCC----cccccccCCCCccccHHHHHHH---HHHh-----CCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSN----METPCSCCGSLKYAHRRCVQRW---CNEK-----GNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~----Li~PC~C~GSlk~vH~~CL~rW---i~~k-----g~~~CEICk~~y~~ 114 (271)
...+.|.||.|+..++. -..-|+=.|=-.-.|-.|.|+- |.|. +...|--|++-|..
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSK 183 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHH
Confidence 46689999998864432 2455665555578999999875 3443 34689999999963
No 92
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.34 E-value=37 Score=21.20 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.4
Q ss_pred CCccccccccccc
Q 024200 101 GNTTCEICQQQFK 113 (271)
Q Consensus 101 g~~~CEICk~~y~ 113 (271)
....|+.|++.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 3568999999885
No 93
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=24.13 E-value=28 Score=19.75 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=9.3
Q ss_pred ccccccccccc
Q 024200 104 TCEICQQQFKP 114 (271)
Q Consensus 104 ~CEICk~~y~~ 114 (271)
.|+.|+..|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 69999999864
No 94
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=23.99 E-value=53 Score=23.51 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=12.0
Q ss_pred ccccccccccccccc
Q 024200 103 TTCEICQQQFKPGYT 117 (271)
Q Consensus 103 ~~CEICk~~y~~~yt 117 (271)
..|.+|++.|.+..-
T Consensus 2 y~C~~CgyiYd~~~G 16 (50)
T cd00730 2 YECRICGYIYDPAEG 16 (50)
T ss_pred cCCCCCCeEECCCCC
Confidence 479999999987543
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=23.95 E-value=72 Score=31.89 Aligned_cols=47 Identities=23% Similarity=0.586 Sum_probs=31.5
Q ss_pred CeeeEeccCCCC-CCcccccccCCCCccccHHHHHHHHHHh--CCccccccccccc
Q 024200 61 VECRICQDEDAD-SNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEICQQQFK 113 (271)
Q Consensus 61 ~~CRIC~e~~~~-~~Li~PC~C~GSlk~vH~~CL~rWi~~k--g~~~CEICk~~y~ 113 (271)
..|-.|.|+.+- ..-..||.|- | +-|---|-+.+ -+-.|+-|+..|.
T Consensus 15 d~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcc
Confidence 359999988542 2346799983 3 24444465544 3669999999884
No 96
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.97 E-value=57 Score=33.33 Aligned_cols=46 Identities=33% Similarity=0.714 Sum_probs=34.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
......|+||.++. ..-+.||. |..|+.+|...+. .|+.|+.....
T Consensus 476 ~~~~~~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~ 521 (543)
T KOG0802|consen 476 REPNDVCAICYQEM--SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKE 521 (543)
T ss_pred hcccCcchHHHHHH--Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhc
Confidence 34568999998877 22345665 9999999998765 79999876654
No 97
>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=22.96 E-value=1.2e+02 Score=26.56 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhceeecCCCCCchHHHHHHHHHHhhhHHHHHH
Q 024200 181 ALIFVFLLILRHTLPVILSRTNDYSFPIFLQLFLRTAGIVLPIYV 225 (271)
Q Consensus 181 aii~m~lLllrh~l~~~~~~~~~~s~~lf~l~~Lr~aGillP~yi 225 (271)
..|++-||++|-++-..++|.-|+. .|--+|.+-+.|.+.|-=+
T Consensus 97 ~~ILigLLiiRi~~K~~is~sid~g-eLsGMF~ilAf~MIvPWRi 140 (163)
T COG4846 97 PVILIGLLIIRIVMKYIISGSIDVG-ELSGMFWILAFGMIVPWRI 140 (163)
T ss_pred hhHHHHHHHHHHHHHHHHcCCccHH-HhhhHHHHHHHHhhhHHHH
Confidence 4789999999999999988876654 2334556667777777544
No 98
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=22.80 E-value=38 Score=31.72 Aligned_cols=50 Identities=26% Similarity=0.581 Sum_probs=37.5
Q ss_pred CcccccccCCCCccccHHHHHHHHHHhC----Cccccc--ccccccccccCCCCcc
Q 024200 74 NMETPCSCCGSLKYAHRRCVQRWCNEKG----NTTCEI--CQQQFKPGYTAPPPLF 123 (271)
Q Consensus 74 ~Li~PC~C~GSlk~vH~~CL~rWi~~kg----~~~CEI--Ck~~y~~~yt~p~~~~ 123 (271)
.+-.||-|.=++-.-..-|..++++.++ +.+|-| |+.-|.-.|..|.+..
T Consensus 180 d~w~PC~C~l~lci~WYPCgLKYCkgkd~k~ssYrCGIKTC~Kc~~f~yYV~qKql 235 (240)
T PF14941_consen 180 DSWKPCICRLELCIEWYPCGLKYCKGKDQKPSSYRCGIKTCQKCYQFDYYVPQKQL 235 (240)
T ss_pred CCCCceeeeecceeeeEccchhhccCCCCCCCccccccccccccccceeecChhhc
Confidence 4569999999999999999999998864 345643 6666766666665443
No 99
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.72 E-value=58 Score=22.90 Aligned_cols=23 Identities=17% Similarity=0.576 Sum_probs=12.0
Q ss_pred HHHHHHHH-hC-Ccccccccccccc
Q 024200 92 CVQRWCNE-KG-NTTCEICQQQFKP 114 (271)
Q Consensus 92 CL~rWi~~-kg-~~~CEICk~~y~~ 114 (271)
-+.++++. ++ ...|++|+.+|..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCH
Confidence 45667665 22 2399999999854
No 100
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.52 E-value=2.9e+02 Score=26.60 Aligned_cols=8 Identities=0% Similarity=0.239 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 024200 223 IYVMVKAV 230 (271)
Q Consensus 223 ~yi~~~ai 230 (271)
+|++.|.+
T Consensus 55 ~~~~~~~~ 62 (398)
T PRK10747 55 LFAIEWLL 62 (398)
T ss_pred HHHHHHHH
Confidence 33444433
No 101
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.07 E-value=1.3e+02 Score=30.16 Aligned_cols=51 Identities=18% Similarity=0.473 Sum_probs=31.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
++...|-||-+... -.-+.||.= -.-..|--|...-=....|.+|+.+...
T Consensus 59 Een~~C~ICA~~~T-Ys~~~PC~H-----~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTT-YSARYPCGH-----QICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCce-EEEeccCCc-----hHHHHHHHHHHHHHhccCCCccccccce
Confidence 45679999976642 123789872 2222454444443456789999999864
No 102
>PF04641 Rtf2: Rtf2 RING-finger
Probab=21.01 E-value=88 Score=28.87 Aligned_cols=49 Identities=18% Similarity=0.501 Sum_probs=32.9
Q ss_pred CCCCeeeEeccCCCCC-C--cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADS-N--METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~-~--Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
...-.|-|...+.... . .+.||.| .+-..+|+.- +....|.+|+.+|..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~---k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL---KKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh---cccccccccCCcccc
Confidence 3445666665554321 2 4789998 6777787766 245679999999973
No 103
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=20.79 E-value=3e+02 Score=19.31 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhceeecCCCCCchHHHHHHHHHHhhhHHHHHHHH
Q 024200 179 SIALIFVFLLILRHTLPVILSRTNDYSFPIFLQLFLRTAGIVLPIYVMV 227 (271)
Q Consensus 179 s~aii~m~lLllrh~l~~~~~~~~~~s~~lf~l~~Lr~aGillP~yi~~ 227 (271)
++|+|+.+||+.- +.=.+-.-+|...|+|-++.++
T Consensus 3 ila~illvlliyv--------------~~kvayvalkilai~lii~~iv 37 (44)
T PF13153_consen 3 ILAIILLVLLIYV--------------FFKVAYVALKILAILLIIFLIV 37 (44)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776532 1112234567767777665554
No 104
>PHA03375 hypothetical protein; Provisional
Probab=20.68 E-value=34 Score=36.89 Aligned_cols=27 Identities=37% Similarity=0.754 Sum_probs=20.1
Q ss_pred eccCCCC--CC-cccccccCCCCccccHHH
Q 024200 66 CQDEDAD--SN-METPCSCCGSLKYAHRRC 92 (271)
Q Consensus 66 C~e~~~~--~~-Li~PC~C~GSlk~vH~~C 92 (271)
|.+++.+ .. ...+|.|.|.+-|||+++
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~r 128 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRSR 128 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEecc
Confidence 6656543 23 379999999999999943
No 105
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.53 E-value=46 Score=30.03 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=17.7
Q ss_pred CCCeeeEeccCCCC--CCccccccc
Q 024200 59 KLVECRICQDEDAD--SNMETPCSC 81 (271)
Q Consensus 59 ~~~~CRIC~e~~~~--~~Li~PC~C 81 (271)
..-+|-||+|+-+. ..-..||.|
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEE
Confidence 45689999998653 345789999
No 106
>PF13994 PgaD: PgaD-like protein
Probab=20.53 E-value=2.5e+02 Score=23.43 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024200 204 YSFPIFLQLFLRTAGIVLPIYVMVKAVT 231 (271)
Q Consensus 204 ~s~~lf~l~~Lr~aGillP~yi~~~ai~ 231 (271)
+..++.++.+.=.+.++..+.+++||.+
T Consensus 57 ~~~~~~~l~~y~~i~~~~a~~Li~Wa~y 84 (138)
T PF13994_consen 57 FLSSLNTLQIYLLIALVNAVILILWAKY 84 (138)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556667777888844
No 107
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=20.52 E-value=70 Score=26.58 Aligned_cols=19 Identities=42% Similarity=1.050 Sum_probs=15.7
Q ss_pred ccccccCCCCccccHHHHHHHHHH
Q 024200 76 ETPCSCCGSLKYAHRRCVQRWCNE 99 (271)
Q Consensus 76 i~PC~C~GSlk~vH~~CL~rWi~~ 99 (271)
..||+|.. +..|..||.--
T Consensus 59 d~PCSC~~-----~~~c~~RW~~L 77 (108)
T PF05210_consen 59 DHPCSCDT-----PSRCCARWLAL 77 (108)
T ss_pred CCccccCC-----ccchHHHHHHH
Confidence 46999986 88999999854
No 108
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=20.30 E-value=2.2e+02 Score=26.46 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHHHHHHhhhceeecCCCCCchHHHHHHH-HHHhh
Q 024200 185 VFLLILRHTLPVILSRTNDYSFPIFLQLF-LRTAG 218 (271)
Q Consensus 185 m~lLllrh~l~~~~~~~~~~s~~lf~l~~-Lr~aG 218 (271)
+..|.+||++.-+.+=....++-+|.+.+ +-+.|
T Consensus 110 Y~~L~~R~~lvPv~~~gSn~a~~l~i~Gil~~~~~ 144 (226)
T COG2738 110 YAFLVLRHALVPVANFGSNLAPLLFILGILLGSTG 144 (226)
T ss_pred cHHHHHhhcccceeccccchhHHHHHHHHHHcchH
Confidence 45789999998887766677777777643 34444
Done!