Query 024200
Match_columns 271
No_of_seqs 238 out of 782
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 5.6E-19 1.9E-23 128.2 4.2 55 59-114 5-59 (60)
2 2d8s_A Cellular modulator of i 99.7 5.5E-17 1.9E-21 123.7 5.6 63 58-120 13-76 (80)
3 2kiz_A E3 ubiquitin-protein li 98.0 7E-06 2.4E-10 58.4 4.6 50 58-114 12-63 (69)
4 2ep4_A Ring finger protein 24; 97.9 1.3E-05 4.5E-10 57.7 5.4 50 58-114 13-64 (74)
5 2ect_A Ring finger protein 126 97.9 8.3E-06 2.8E-10 59.4 3.3 51 58-115 13-65 (78)
6 1v87_A Deltex protein 2; ring- 97.8 1.6E-05 5.5E-10 61.8 4.6 50 61-115 26-95 (114)
7 2ecm_A Ring finger and CHY zin 97.7 1.3E-05 4.4E-10 54.4 2.5 48 59-113 4-54 (55)
8 1x4j_A Ring finger protein 38; 97.7 2.1E-05 7.2E-10 57.0 3.5 50 58-114 21-72 (75)
9 2l0b_A E3 ubiquitin-protein li 97.7 2.4E-05 8.3E-10 59.3 3.5 50 58-114 38-89 (91)
10 1chc_A Equine herpes virus-1 r 97.6 5E-05 1.7E-09 53.7 4.0 49 59-114 4-52 (68)
11 2yur_A Retinoblastoma-binding 97.6 4.3E-05 1.5E-09 55.6 3.6 50 58-113 13-63 (74)
12 2ysl_A Tripartite motif-contai 97.6 4.6E-05 1.6E-09 54.5 3.7 52 57-114 17-69 (73)
13 2ecl_A Ring-box protein 2; RNF 97.6 2.6E-05 9E-10 58.1 2.3 27 86-114 50-76 (81)
14 2ecv_A Tripartite motif-contai 97.6 0.00014 4.7E-09 52.8 6.1 51 58-114 17-71 (85)
15 2ct2_A Tripartite motif protei 97.6 6.6E-05 2.3E-09 55.2 4.5 52 58-114 13-68 (88)
16 2ea6_A Ring finger protein 4; 97.5 2.5E-05 8.4E-10 54.9 1.7 50 58-114 13-68 (69)
17 2ecw_A Tripartite motif-contai 97.5 0.00011 3.7E-09 53.4 5.0 51 58-114 17-71 (85)
18 1iym_A EL5; ring-H2 finger, ub 97.5 2.3E-05 8E-10 53.2 1.3 48 59-113 4-54 (55)
19 2d8t_A Dactylidin, ring finger 97.5 2.6E-05 9E-10 56.0 1.5 50 58-115 13-62 (71)
20 2ecn_A Ring finger protein 141 97.5 3.4E-05 1.2E-09 55.0 1.8 48 58-114 13-60 (70)
21 2ecy_A TNF receptor-associated 97.4 7.6E-05 2.6E-09 52.8 3.2 51 57-114 12-62 (66)
22 2csy_A Zinc finger protein 183 97.4 0.00019 6.6E-09 52.6 4.7 48 58-113 13-60 (81)
23 2djb_A Polycomb group ring fin 97.4 0.00014 4.6E-09 52.4 3.8 49 58-114 13-62 (72)
24 2ysj_A Tripartite motif-contai 97.3 0.00022 7.6E-09 49.8 4.6 46 57-108 17-63 (63)
25 3ztg_A E3 ubiquitin-protein li 97.3 0.00017 5.8E-09 53.9 3.8 50 58-113 11-61 (92)
26 3ng2_A RNF4, snurf, ring finge 97.3 4.7E-05 1.6E-09 54.0 0.7 50 58-114 8-63 (71)
27 2ct0_A Non-SMC element 1 homol 97.3 0.00014 4.7E-09 54.6 3.2 52 58-114 13-64 (74)
28 2xeu_A Ring finger protein 4; 97.2 5E-05 1.7E-09 52.5 0.1 49 59-114 2-56 (64)
29 2ecj_A Tripartite motif-contai 97.2 0.00027 9.3E-09 48.1 3.5 45 58-108 13-58 (58)
30 1t1h_A Gspef-atpub14, armadill 97.2 0.00021 7.1E-09 51.8 2.9 50 58-114 6-55 (78)
31 2egp_A Tripartite motif-contai 97.1 0.00013 4.4E-09 52.7 1.4 51 58-114 10-65 (79)
32 3dpl_R Ring-box protein 1; ubi 97.1 0.00022 7.6E-09 56.4 2.8 47 60-113 37-100 (106)
33 3lrq_A E3 ubiquitin-protein li 96.8 0.00047 1.6E-08 52.9 2.2 49 59-114 21-70 (100)
34 1jm7_A BRCA1, breast cancer ty 96.8 0.00091 3.1E-08 51.3 3.6 50 60-115 21-71 (112)
35 1g25_A CDK-activating kinase a 96.7 0.00098 3.3E-08 46.8 3.2 49 60-114 3-55 (65)
36 1e4u_A Transcriptional repress 96.7 0.0014 4.9E-08 48.9 3.8 53 58-114 9-62 (78)
37 3fl2_A E3 ubiquitin-protein li 96.6 0.0011 3.7E-08 52.4 3.2 49 59-114 51-99 (124)
38 2y43_A E3 ubiquitin-protein li 96.6 0.00075 2.6E-08 51.2 1.7 48 59-114 21-69 (99)
39 4a0k_B E3 ubiquitin-protein li 96.5 0.00042 1.4E-08 56.1 0.3 47 60-113 48-111 (117)
40 2ckl_B Ubiquitin ligase protei 96.4 0.00099 3.4E-08 55.1 1.9 48 59-113 53-101 (165)
41 4ayc_A E3 ubiquitin-protein li 96.4 0.00074 2.5E-08 54.6 1.0 45 61-113 54-98 (138)
42 1z6u_A NP95-like ring finger p 96.3 0.002 6.9E-08 53.3 2.8 50 59-115 77-126 (150)
43 4ap4_A E3 ubiquitin ligase RNF 96.2 0.00082 2.8E-08 52.3 -0.1 49 59-114 6-60 (133)
44 3hct_A TNF receptor-associated 96.2 0.0028 9.4E-08 49.8 3.0 52 57-115 15-66 (118)
45 2ckl_A Polycomb group ring fin 96.1 0.0013 4.6E-08 50.6 0.8 48 59-114 14-62 (108)
46 1rmd_A RAG1; V(D)J recombinati 95.8 0.0049 1.7E-07 47.9 3.0 50 59-115 22-71 (116)
47 2kr4_A Ubiquitin conjugation f 95.8 0.0091 3.1E-07 44.7 4.3 51 56-114 10-60 (85)
48 3k1l_B Fancl; UBC, ring, RWD, 95.8 0.0043 1.5E-07 59.3 2.9 56 58-116 306-375 (381)
49 2y1n_A E3 ubiquitin-protein li 95.7 0.0046 1.6E-07 59.4 3.0 49 60-115 332-380 (389)
50 3l11_A E3 ubiquitin-protein li 95.2 0.0025 8.5E-08 49.5 -0.8 49 59-114 14-62 (115)
51 4ap4_A E3 ubiquitin ligase RNF 95.1 0.0035 1.2E-07 48.6 -0.1 51 58-115 70-126 (133)
52 2c2l_A CHIP, carboxy terminus 95.0 0.013 4.5E-07 50.8 3.4 49 59-114 207-255 (281)
53 2kre_A Ubiquitin conjugation f 94.8 0.018 6E-07 44.7 3.1 51 56-114 25-75 (100)
54 1wgm_A Ubiquitin conjugation f 94.4 0.036 1.2E-06 42.8 4.1 51 57-114 19-69 (98)
55 1jm7_B BARD1, BRCA1-associated 94.2 0.011 3.7E-07 46.3 0.7 45 59-113 21-66 (117)
56 3knv_A TNF receptor-associated 93.8 0.012 4E-07 48.2 0.1 50 56-112 27-76 (141)
57 2yu4_A E3 SUMO-protein ligase 93.6 0.052 1.8E-06 41.1 3.5 49 57-111 4-59 (94)
58 2vje_B MDM4 protein; proto-onc 93.5 0.019 6.5E-07 40.6 0.8 48 59-113 6-55 (63)
59 4ic3_A E3 ubiquitin-protein li 93.5 0.013 4.6E-07 42.5 -0.0 44 59-114 23-67 (74)
60 3hcs_A TNF receptor-associated 93.4 0.036 1.2E-06 45.7 2.5 52 57-115 15-66 (170)
61 3nw0_A Non-structural maintena 93.3 0.045 1.6E-06 48.8 3.1 50 59-114 179-229 (238)
62 1bor_A Transcription factor PM 92.9 0.025 8.5E-07 38.9 0.6 45 59-114 5-49 (56)
63 2f42_A STIP1 homology and U-bo 92.6 0.054 1.9E-06 46.7 2.5 50 58-114 104-153 (179)
64 2vje_A E3 ubiquitin-protein li 92.5 0.036 1.2E-06 39.3 1.0 48 59-113 7-56 (64)
65 1wim_A KIAA0161 protein; ring 92.1 0.068 2.3E-06 40.1 2.2 49 59-112 4-62 (94)
66 2ecg_A Baculoviral IAP repeat- 91.2 0.11 3.8E-06 37.4 2.5 44 59-114 24-68 (75)
67 2ea5_A Cell growth regulator w 91.0 0.24 8.1E-06 35.5 4.0 45 58-114 13-58 (68)
68 3htk_C E3 SUMO-protein ligase 83.7 0.49 1.7E-05 43.4 2.4 52 57-114 178-232 (267)
69 3t6p_A Baculoviral IAP repeat- 83.6 0.16 5.3E-06 47.7 -1.0 45 58-114 293-338 (345)
70 2bay_A PRE-mRNA splicing facto 81.4 0.72 2.5E-05 32.5 2.0 46 61-114 4-50 (61)
71 2lri_C Autoimmune regulator; Z 80.8 0.51 1.7E-05 34.3 1.1 51 56-112 8-60 (66)
72 2yho_A E3 ubiquitin-protein li 77.0 0.52 1.8E-05 34.6 0.1 44 60-115 18-62 (79)
73 1weu_A Inhibitor of growth fam 72.4 1.9 6.6E-05 33.3 2.3 52 55-112 31-86 (91)
74 1weo_A Cellulose synthase, cat 65.9 8.2 0.00028 30.2 4.6 53 59-114 15-70 (93)
75 1wen_A Inhibitor of growth fam 63.9 1.6 5.4E-05 32.0 0.2 50 57-112 13-66 (71)
76 2l43_A N-teminal domain from h 62.2 1.3 4.4E-05 33.7 -0.6 53 57-112 22-76 (88)
77 2ku3_A Bromodomain-containing 57.5 1.5 5.2E-05 32.1 -0.8 51 58-111 14-66 (71)
78 2ysm_A Myeloid/lymphoid or mix 52.5 2.1 7.1E-05 33.1 -0.9 39 57-98 4-42 (111)
79 2k16_A Transcription initiatio 51.7 1.5 5E-05 31.8 -1.8 53 58-113 16-70 (75)
80 1f62_A Transcription factor WS 49.2 3.2 0.00011 27.8 -0.2 46 62-110 2-49 (51)
81 2vnf_A ING 4, P29ING4, inhibit 43.4 1.7 5.8E-05 30.7 -2.5 47 58-110 8-58 (60)
82 2ko5_A Ring finger protein Z; 43.3 8 0.00027 30.6 1.1 49 59-116 27-75 (99)
83 2jwa_A Receptor tyrosine-prote 42.7 34 0.0012 23.2 4.1 30 211-241 13-42 (44)
84 2l5u_A Chromodomain-helicase-D 39.9 6.7 0.00023 27.5 0.2 48 58-111 9-58 (61)
85 1wem_A Death associated transc 36.1 14 0.00047 26.6 1.4 51 60-114 16-73 (76)
86 2vpb_A Hpygo1, pygopus homolog 35.3 13 0.00043 26.7 1.1 34 57-93 5-40 (65)
87 2yql_A PHD finger protein 21A; 33.9 2.5 8.7E-05 29.1 -2.8 47 58-110 7-55 (56)
88 2e6r_A Jumonji/ARID domain-con 32.2 3 0.0001 31.8 -2.8 51 58-111 14-66 (92)
89 1wep_A PHF8; structural genomi 31.5 37 0.0013 24.6 3.2 53 58-114 10-66 (79)
90 1wev_A Riken cDNA 1110020M19; 31.5 2.6 8.9E-05 31.8 -3.3 53 59-114 15-75 (88)
91 1wew_A DNA-binding family prot 30.7 49 0.0017 24.0 3.7 54 55-112 11-73 (78)
92 3u5n_A E3 ubiquitin-protein li 30.6 3.6 0.00012 35.2 -2.9 49 59-113 6-56 (207)
93 3kv5_D JMJC domain-containing 28.5 6.8 0.00023 38.3 -1.8 54 58-115 35-92 (488)
94 2lbm_A Transcriptional regulat 27.6 31 0.0011 28.5 2.3 46 58-109 61-115 (142)
95 3ql9_A Transcriptional regulat 25.7 44 0.0015 27.2 2.9 46 58-109 55-109 (129)
96 2lv9_A Histone-lysine N-methyl 24.6 12 0.00039 28.7 -0.8 49 58-110 26-75 (98)
97 1znf_A 31ST zinc finger from X 24.1 26 0.00088 18.2 0.9 12 103-114 2-13 (27)
98 6rxn_A Rubredoxin; electron tr 24.0 38 0.0013 22.9 1.8 18 102-119 4-21 (46)
99 2yt5_A Metal-response element- 23.5 5.1 0.00018 28.0 -2.8 51 58-111 4-61 (66)
100 2m0f_A Zinc finger and BTB dom 22.8 25 0.00084 18.3 0.6 13 102-114 2-14 (29)
101 3v43_A Histone acetyltransfera 22.7 35 0.0012 26.3 1.7 34 59-95 4-43 (112)
102 3o36_A Transcription intermedi 22.6 8.4 0.00029 32.1 -2.1 48 60-113 4-53 (184)
103 1wii_A Hypothetical UPF0222 pr 22.5 10 0.00035 28.9 -1.4 30 100-136 45-74 (85)
104 1dx8_A Rubredoxin; electron tr 22.3 1E+02 0.0036 22.3 4.1 15 102-116 7-21 (70)
105 1ard_A Yeast transcription fac 22.3 28 0.00097 18.2 0.8 12 103-114 3-14 (29)
106 2jny_A Uncharacterized BCR; st 21.6 24 0.00082 25.6 0.5 32 74-115 10-41 (67)
107 2jmi_A Protein YNG1, ING1 homo 21.5 7.1 0.00024 30.0 -2.5 47 58-110 24-75 (90)
108 1jb0_I Photosystem 1 reaction 21.5 1.2E+02 0.0042 19.9 3.8 33 202-234 3-35 (38)
109 2ri7_A Nucleosome-remodeling f 20.9 15 0.00051 30.1 -0.9 51 58-112 6-60 (174)
110 2lvu_A Zinc finger and BTB dom 26.2 21 0.00071 18.6 0.0 12 103-114 3-14 (26)
111 2kvh_A Zinc finger and BTB dom 20.7 27 0.00092 18.3 0.5 13 102-114 3-15 (27)
112 1x4i_A Inhibitor of growth pro 20.3 14 0.00049 26.7 -1.0 52 57-112 3-56 (70)
113 3uon_A Human M2 muscarinic ace 20.0 3.2E+02 0.011 23.9 7.6 21 213-233 189-209 (467)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=5.6e-19 Score=128.22 Aligned_cols=55 Identities=31% Similarity=0.778 Sum_probs=50.1
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...||||+++.+ ++++.||+|+||+||+|+.||++|++++++.+||+|+++|+.
T Consensus 5 ~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5679999998754 468999999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-17 Score=123.71 Aligned_cols=63 Identities=33% Similarity=0.782 Sum_probs=54.6
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccccCCC
Q 024200 58 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPP 120 (271)
Q Consensus 58 ~~~~~CRIC~e~~~-~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~yt~p~ 120 (271)
.+...|+||+++.+ +++++.||+|+|+++++|+.||++|+..+++..|++|+++|....+.+|
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 45678999998754 4578999999999999999999999999998999999999987655444
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.97 E-value=7e-06 Score=58.44 Aligned_cols=50 Identities=24% Similarity=0.614 Sum_probs=39.3
Q ss_pred CCCCeeeEeccCCCC--CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDAD--SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~--~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.....|.||++.... .....||. +..|..|+.+|++.++ .|++|+.++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 456789999987543 34567875 6789999999998754 69999998865
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.3e-05 Score=57.73 Aligned_cols=50 Identities=20% Similarity=0.596 Sum_probs=38.3
Q ss_pred CCCCeeeEeccCCCCCC--cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~--Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.....|.||++...+.. ...||. +..|..|+.+|++.+. .|++|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 34568999999865432 234764 6799999999998754 89999998854
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.86 E-value=8.3e-06 Score=59.40 Aligned_cols=51 Identities=22% Similarity=0.696 Sum_probs=39.4
Q ss_pred CCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 58 RKLVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~--~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
.....|.||++...+. ....||. +..|..|+.+|++.+ ..|++|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCc
Confidence 4567899999886533 2346765 689999999999754 5899999998654
No 6
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.82 E-value=1.6e-05 Score=61.82 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=38.3
Q ss_pred CeeeEeccCCCCCC--------------c---ccccccCCCCccccHHHHHHHHHH---hCCccccccccccccc
Q 024200 61 VECRICQDEDADSN--------------M---ETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKPG 115 (271)
Q Consensus 61 ~~CRIC~e~~~~~~--------------L---i~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y~~~ 115 (271)
..|-||++...+.. . ..||. +..|..||.+|+.. ++...|++|+..|...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 48999998753211 1 56776 78999999999975 4567999999999654
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.74 E-value=1.3e-05 Score=54.38 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=38.3
Q ss_pred CCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDAD---SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~---~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
....|.||++...+ .....||. +..|..|+.+|++.+ ..|++|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 45689999988532 34678875 689999999999987 68999998764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=2.1e-05 Score=57.03 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=39.1
Q ss_pred CCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~--~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.+...|-||++...+. ....||. +..|..|+.+|++.+ ..|++|++++.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 4567899999886443 2467875 689999999999875 489999988764
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.68 E-value=2.4e-05 Score=59.29 Aligned_cols=50 Identities=34% Similarity=0.820 Sum_probs=39.1
Q ss_pred CCCCeeeEeccCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~--~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+....|-||++...++ ....||. +..|..|+.+|++.+ ..|++|+.++.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 4567999999886433 3457865 689999999999754 489999998764
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.60 E-value=5e-05 Score=53.68 Aligned_cols=49 Identities=24% Similarity=0.699 Sum_probs=39.2
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
....|.||++...+.....||. +..|..|+.+|+..+ ..|++|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 3568999998876544678876 679999999999765 589999988863
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.59 E-value=4.3e-05 Score=55.55 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=40.9
Q ss_pred CCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~P-C~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
.+...|.||++...+ +...| |. +..|+.|+.+|++.++...|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTT-CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhC-CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 456789999887653 66777 65 6789999999999888789999999753
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=4.6e-05 Score=54.46 Aligned_cols=52 Identities=19% Similarity=0.445 Sum_probs=40.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH-hCCcccccccccccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE-KGNTTCEICQQQFKP 114 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~-kg~~~CEICk~~y~~ 114 (271)
..+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|+.++..
T Consensus 17 ~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSS-EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCC-eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456799999987653 5556775 67999999999985 456799999998854
No 13
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=2.6e-05 Score=58.07 Aligned_cols=27 Identities=26% Similarity=0.753 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHHhCCcccccccccccc
Q 024200 86 KYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 86 k~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+..|..||.+|++.++ .|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQNN--RCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTCC--BCTTTCCBCCE
T ss_pred CccChHHHHHHHHhCC--CCCCcCCCcch
Confidence 7899999999998764 99999998853
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00014 Score=52.79 Aligned_cols=51 Identities=22% Similarity=0.637 Sum_probs=40.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH----hCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE----KGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~----kg~~~CEICk~~y~~ 114 (271)
.+...|.||++...+ +...||. +..|..|+.+|+.. .+...|++|+..+..
T Consensus 17 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456789999988654 5566875 67899999999987 357899999999865
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=6.6e-05 Score=55.23 Aligned_cols=52 Identities=19% Similarity=0.540 Sum_probs=41.2
Q ss_pred CCCCeeeEeccCCCC---CCcccccccCCCCccccHHHHHHHHHHh-CCcccccccccccc
Q 024200 58 RKLVECRICQDEDAD---SNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~---~~Li~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEICk~~y~~ 114 (271)
.+...|-||++...+ .+...||. +..|..|+.+|++.+ +...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456789999988643 15567875 789999999999876 46899999998764
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=2.5e-05 Score=54.93 Aligned_cols=50 Identities=22% Similarity=0.552 Sum_probs=38.3
Q ss_pred CCCCeeeEeccCCCC----C--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDAD----S--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~----~--~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.+...|-||++...+ . ....||. +..|..|+.+|++. ...|++|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 456789999987422 1 1567875 68999999999987 4589999998753
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.53 E-value=0.00011 Score=53.35 Aligned_cols=51 Identities=20% Similarity=0.541 Sum_probs=41.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh----CCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK----GNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~k----g~~~CEICk~~y~~ 114 (271)
.+...|.||++...+ +...||. +..|..|+.+|+..+ +...|++|+..+..
T Consensus 17 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 356789999888643 5667875 678999999999984 47899999998864
No 18
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.52 E-value=2.3e-05 Score=53.18 Aligned_cols=48 Identities=31% Similarity=0.693 Sum_probs=36.2
Q ss_pred CCCeeeEeccCCCC--CCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDAD--SNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~--~~Li~P-C~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
+...|-||++...+ .....| |. +..|..|+.+|++. +..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 35689999988643 244555 64 68999999999976 458999998764
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=2.6e-05 Score=56.05 Aligned_cols=50 Identities=22% Similarity=0.475 Sum_probs=39.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
.+...|.||++...+ +...||. +..|..|+.+|+..+ ..|++|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-PVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS-EEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC-CEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 456789999987643 5667875 679999999999754 6999999998654
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=3.4e-05 Score=54.95 Aligned_cols=48 Identities=31% Similarity=0.808 Sum_probs=39.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.+...|.||++...+ ...||. +..|..|+.+|+. +...|++|++++..
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 456789999998765 778886 6799999999997 56799999998864
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=7.6e-05 Score=52.77 Aligned_cols=51 Identities=16% Similarity=0.376 Sum_probs=39.7
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
..+...|.||++...+ +...||. +..|..|+.+|++ ++...|++|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS-PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESS-CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcC-eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 3456789999877643 5556776 6789999999997 556789999998754
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00019 Score=52.59 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=38.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
.....|.||++...+ +...||. +..|..|+.+|++. ...|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 456789999888654 6678876 67899999999975 458999999885
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00014 Score=52.40 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=38.8
Q ss_pred CCCCeeeEeccCCCCCCcc-cccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNME-TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li-~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.+...|.||++...+ +.. .||. +..|..|+.+|++. ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLID-ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSS-CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHC-cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 456789999887654 443 5886 67899999999976 4689999998864
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.00022 Score=49.76 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=36.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh-CCcccccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEIC 108 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEIC 108 (271)
..+...|.||++...+ +...||. +..|+.|+.+|++.+ +...|++|
T Consensus 17 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999987654 6666875 678999999999864 56789988
No 25
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.30 E-value=0.00017 Score=53.90 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=41.5
Q ss_pred CCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~P-C~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
.+...|-||++... .+...| |. +..++.|+.+|+..++...|++|+..+.
T Consensus 11 ~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45689999998765 467778 64 6789999999999888899999999873
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.30 E-value=4.7e-05 Score=54.00 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=38.7
Q ss_pred CCCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~------~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.+...|-||++...+ .....||. +..|..|+.+|++.+ ..|++|+.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 456789999987421 12567876 689999999999876 499999998864
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00014 Score=54.64 Aligned_cols=52 Identities=17% Similarity=0.462 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+....|-||++....+. .-+ .| -.-.|..||.+|++.+++.+|++|+..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~-~C~-~C---~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ-SCE-TC---GIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE-ECS-SS---CCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC-ccC-CC---CchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35678999988764332 111 45 357899999999998877899999998863
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.22 E-value=5e-05 Score=52.54 Aligned_cols=49 Identities=22% Similarity=0.580 Sum_probs=37.6
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~------~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|-||++...+ .....||. +..|..|+.+|++. +..|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 35689999987432 12567776 67999999999987 4599999998864
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.00027 Score=48.06 Aligned_cols=45 Identities=18% Similarity=0.655 Sum_probs=35.5
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH-hCCcccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE-KGNTTCEIC 108 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~-kg~~~CEIC 108 (271)
.+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 456789999988754 5567875 67899999999875 467789988
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.16 E-value=0.00021 Score=51.83 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=39.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.+...|.||++...+ +...||. +..++.|+.+|++. +..+|++|+.++..
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-CEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 456789999887653 6677876 67899999999973 56799999998864
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.11 E-value=0.00013 Score=52.73 Aligned_cols=51 Identities=22% Similarity=0.559 Sum_probs=40.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh-----CCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-----GNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~k-----g~~~CEICk~~y~~ 114 (271)
.+...|.||++...+ +...||. +..+..|+.+|++.+ +...|++|+..+..
T Consensus 10 ~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 456789999988654 5566875 678999999999873 47899999999864
No 32
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.10 E-value=0.00022 Score=56.43 Aligned_cols=47 Identities=21% Similarity=0.587 Sum_probs=34.8
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 60 LVECRICQDEDADS-----------------NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 60 ~~~CRIC~e~~~~~-----------------~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
...|-||++..++. ....||. +..|..|+.+|+.. +..|++|+.+|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 35688887764321 1235665 78999999999976 468999999975
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.80 E-value=0.00047 Score=52.94 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=40.1
Q ss_pred CCCeeeEeccCCCCCCcc-cccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNME-TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li-~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|-||++...+ +.. .||. +..|..|+.+|+..++ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 45689999988754 555 8886 6789999999999875 699999999854
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.77 E-value=0.00091 Score=51.27 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=39.4
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHh-CCccccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKPG 115 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~k-g~~~CEICk~~y~~~ 115 (271)
...|.||++... .+...||. +..+..|+.+|+..+ +...|++|+..+...
T Consensus 21 ~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhc-CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 457999988764 35667875 678999999999874 457899999988653
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.73 E-value=0.00098 Score=46.79 Aligned_cols=49 Identities=18% Similarity=0.438 Sum_probs=36.5
Q ss_pred CCeeeEecc-CCCCC--C-cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 60 LVECRICQD-EDADS--N-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 60 ~~~CRIC~e-~~~~~--~-Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
...|-||++ ...+. . +..||. +..+..|+.+|+.. +...|++|+..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 457999998 32221 1 457887 67899999999874 46789999998864
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.65 E-value=0.0014 Score=48.93 Aligned_cols=53 Identities=26% Similarity=0.570 Sum_probs=41.6
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~-~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
++...|-||++... ......||.|. +.+.+.|+.+|.+. +...|++|+..|..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 35678999999764 33567888883 67899999998754 56899999999964
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.63 E-value=0.0011 Score=52.36 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=39.1
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|-||++...+ +...||. +..|+.|+.+|+. .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 34689999887653 6667875 6789999999998 455699999999864
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.55 E-value=0.00075 Score=51.18 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=37.7
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|.||++...+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 35689999988754 4443 776 678999999999853 699999998864
No 39
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.55 E-value=0.00042 Score=56.10 Aligned_cols=47 Identities=21% Similarity=0.604 Sum_probs=0.4
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 60 LVECRICQDEDADS-----------------NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 60 ~~~CRIC~e~~~~~-----------------~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
...|-||++..++. .+..||. +..|..|+.+|++.+ ..|++|+.+|.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeee
Confidence 35799998775321 1123554 789999999999874 58999999875
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.44 E-value=0.00099 Score=55.10 Aligned_cols=48 Identities=25% Similarity=0.539 Sum_probs=37.7
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
....|-||++...+ +... ||. +..|..|+.+|+.. +...|++|+..+.
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 34589999888654 4443 776 68899999999984 4678999999885
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.43 E-value=0.00074 Score=54.60 Aligned_cols=45 Identities=24% Similarity=0.724 Sum_probs=36.5
Q ss_pred CeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 61 VECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 61 ~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
..|.||++...+ +...||. +..|..|+.+|+..+ ..|++|+.++.
T Consensus 54 ~~C~iC~~~~~~-~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCC
T ss_pred CCCcccCcccCC-ceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 479999987653 6677875 689999999999754 58999998875
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.27 E-value=0.002 Score=53.32 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=39.7
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
+...|.||++...+ +...||. +..++.|+.+|+.. +...|++|+..+...
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 34689999887653 6667886 67899999999985 556899999998754
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.16 E-value=0.00082 Score=52.29 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=38.2
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~------~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|-||++...+ .....||. +..|..|+.+|++.+. .|++|++.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCcc
Confidence 45689999987432 12667876 7899999999997654 99999998864
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.16 E-value=0.0028 Score=49.79 Aligned_cols=52 Identities=19% Similarity=0.470 Sum_probs=40.7
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
..+...|.||++...+ +...||. +..+..|+.+|+..++. .|++|+..+...
T Consensus 15 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcC-eEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHH
Confidence 3456789999977653 5667765 67999999999987654 899999988653
No 45
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.09 E-value=0.0013 Score=50.64 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=38.1
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|.||++...+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 45689999887654 5554 886 678999999999764 799999998764
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.83 E-value=0.0049 Score=47.90 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=39.6
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
+...|.||++...+ +...||. +..+..|+.+|++.+ ...|++|+.++...
T Consensus 22 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILAD-PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcC-cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 35689999887653 6667875 678999999999874 45899999998653
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.79 E-value=0.0091 Score=44.73 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=40.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
...+.-.|-||++-..+ +...||. +-.-+.|+.+|+.. ..+|++|+.++..
T Consensus 10 ~~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTD-PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcC-CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 34567899999887654 7888864 45779999999985 4689999998864
No 48
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.76 E-value=0.0043 Score=59.35 Aligned_cols=56 Identities=20% Similarity=0.646 Sum_probs=41.1
Q ss_pred CCCCeeeEeccCCCC-CCc-ccccc---cCCCCccccHHHHHHHHHHhCC---------cccccccccccccc
Q 024200 58 RKLVECRICQDEDAD-SNM-ETPCS---CCGSLKYAHRRCVQRWCNEKGN---------TTCEICQQQFKPGY 116 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~-~~L-i~PC~---C~GSlk~vH~~CL~rWi~~kg~---------~~CEICk~~y~~~y 116 (271)
....+|-||++...+ +.+ ...|. |+ +..|..||.+|++..++ ..|+.|+++....|
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 467899999988644 333 34463 53 78999999999987532 48999999876544
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.74 E-value=0.0046 Score=59.37 Aligned_cols=49 Identities=22% Similarity=0.662 Sum_probs=39.3
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
...|.||++... .+...||. +..|..|+.+|+.. +...|++|+.++...
T Consensus 332 ~~~C~ICle~~~-~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC-CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC-CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 479999988764 36778987 45699999999984 456999999988653
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.17 E-value=0.0025 Score=49.52 Aligned_cols=49 Identities=18% Similarity=0.535 Sum_probs=38.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|.||++... .+...||. +..+..|+.+|+.. +...|++|+..+..
T Consensus 14 ~~~~C~iC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILV-EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCS-SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccC-ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 4568999998765 36666876 67999999999964 45799999999863
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.11 E-value=0.0035 Score=48.64 Aligned_cols=51 Identities=22% Similarity=0.533 Sum_probs=38.1
Q ss_pred CCCCeeeEeccCCCC----C--CcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 58 RKLVECRICQDEDAD----S--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~----~--~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
.+...|-||++...+ . ....||. +..|..|+.+|++.+ ..|++|+..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 456789999877422 1 2455664 789999999999875 4999999988643
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.05 E-value=0.013 Score=50.78 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=38.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
..-.|-||++-..+ |.+.||. +-.-+.|+.+|+..++.. |++|+.++..
T Consensus 207 ~~~~c~i~~~~~~d-Pv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred cccCCcCcCCHhcC-CeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 46789999888754 8889974 456689999999876644 9999998854
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.79 E-value=0.018 Score=44.70 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=40.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
...+.-.|-||++-..+ |...||. +-.-+.|+.+|+.. ..+|++|+.++..
T Consensus 25 ~~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTD-PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSS-EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccC-CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 33467899999887654 8888874 46789999999974 5699999998864
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.42 E-value=0.036 Score=42.76 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=39.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
..+...|-||++-..+ +...||. -+-.-+.|+++|+.. ..+|++|+.++..
T Consensus 19 ~p~~~~CpI~~~~m~d-PV~~~cG----~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD-PVVLPSS----RVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSS-EEECTTT----CCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccC-CeECCCC----CeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 3457899999887754 7778865 135678999999986 4589999998864
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.21 E-value=0.011 Score=46.26 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=36.4
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
+...|.||++...+ +... ||. +..++.|+.+|+. ..|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 45789999887654 5555 876 6789999999987 68999999984
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=93.75 E-value=0.012 Score=48.24 Aligned_cols=50 Identities=14% Similarity=0.352 Sum_probs=38.7
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024200 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (271)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (271)
...+...|-||++...+ +...||. +..++.|+.+|++. +...|++|+.+.
T Consensus 27 ~l~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 34567799999887653 5667776 67899999999964 456999999864
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.60 E-value=0.052 Score=41.12 Aligned_cols=49 Identities=14% Similarity=0.358 Sum_probs=38.1
Q ss_pred CCCCCeeeEeccCCCCCCcccc-cccCCCCccccHHHHHHHHHHh----CCccccc--cccc
Q 024200 57 PRKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEK----GNTTCEI--CQQQ 111 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~P-C~C~GSlk~vH~~CL~rWi~~k----g~~~CEI--Ck~~ 111 (271)
......|-||++-..+ +...| |. +-.-+.|+.+|+... +..+|++ |...
T Consensus 4 ~~~~~~CPI~~~~~~d-PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK-PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSS-EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcC-CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3456789999877654 77776 75 567799999999875 4679999 8866
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=93.53 E-value=0.019 Score=40.64 Aligned_cols=48 Identities=21% Similarity=0.580 Sum_probs=35.4
Q ss_pred CCCeeeEeccCCCCCC-cccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDADSN-METPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~-Li~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
....|.||++...+.. +..||. +. +=..|+.+|.+.+ ..|++|+.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 4568999998764422 235987 33 5789999998653 69999999875
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=93.49 E-value=0.013 Score=42.47 Aligned_cols=44 Identities=20% Similarity=0.591 Sum_probs=35.3
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|.||++... ++...||. +. ....|+.+| ..|++|+..+..
T Consensus 23 ~~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 3468999998764 36667986 56 899999999 799999998864
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=93.44 E-value=0.036 Score=45.71 Aligned_cols=52 Identities=19% Similarity=0.470 Sum_probs=40.2
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
..+.-.|-||++...+ +...||. ....+.|+.+|++.++. +|++|+..+...
T Consensus 15 ~~~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcC-cEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcchh
Confidence 3456789999887653 5666764 67899999999987653 999999988653
No 61
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.29 E-value=0.045 Score=48.79 Aligned_cols=50 Identities=20% Similarity=0.570 Sum_probs=38.7
Q ss_pred CCCeeeEeccCCCCCCcccccc-cCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~-C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
....|-||.+--..+ .-|. |. .-.|..|+.+|++.++...|+.|+..+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 478999998765432 2232 53 58999999999998888899999998753
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.88 E-value=0.025 Score=38.87 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=34.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|.||++...+ +...||. +..+..|+.+| ...|++|++++..
T Consensus 5 ~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKC-PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBC-CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCC-eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 45679999887653 6778876 56788998773 5789999988753
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=92.57 E-value=0.054 Score=46.66 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.....|-||++-..+ |.+.||. +-.=+.|+.+|+...+. +|++|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 356789999887754 7888874 46779999999988665 79999998864
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=92.48 E-value=0.036 Score=39.28 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=34.4
Q ss_pred CCCeeeEeccCCCCCCc-ccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 024200 59 KLVECRICQDEDADSNM-ETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~L-i~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~ 113 (271)
+...|.||++...+..+ ..||. +. .=..|+.+|.+. +..|++|+.++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 34589999988654322 23986 33 347999999964 358999999875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.06 E-value=0.068 Score=40.07 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=37.0
Q ss_pred CCCeeeEeccCCCCCCcc--cccccCCCCccccHHHHHHHHHHh---C---Cccccc--ccccc
Q 024200 59 KLVECRICQDEDADSNME--TPCSCCGSLKYAHRRCVQRWCNEK---G---NTTCEI--CQQQF 112 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li--~PC~C~GSlk~vH~~CL~rWi~~k---g---~~~CEI--Ck~~y 112 (271)
+...|-||++......+. .||. +..-+.|+.+++..+ | ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 456899999886544443 4787 578899999999764 3 479999 99884
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.21 E-value=0.11 Score=37.42 Aligned_cols=44 Identities=20% Similarity=0.594 Sum_probs=33.2
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
+...|.||++... ++...||. +. ....|+++ ...|++|+.++..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhC------CCCCccCCceecC
Confidence 3468999988764 36678986 45 78899854 2699999998864
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.96 E-value=0.24 Score=35.55 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=33.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.+...|.||++... .....||. +. +-..|+++ ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhc
Confidence 34678999988764 36778997 33 56688873 3699999998764
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=83.71 E-value=0.49 Score=43.38 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCCCCeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccc--ccccccc
Q 024200 57 PRKLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEI--CQQQFKP 114 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEI--Ck~~y~~ 114 (271)
......|-||++-..+ |... .|. +-.=+.|+.+|+..++...|++ |+..+..
T Consensus 178 ~~~el~CPIcl~~f~D-PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEA-PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSS-EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccC-CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3566789999877643 5443 554 5577899999998878889999 9998754
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=83.62 E-value=0.16 Score=47.70 Aligned_cols=45 Identities=24% Similarity=0.669 Sum_probs=35.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
.+...|.||++... ++...||. +. ....|+.+| ..|++|+..+..
T Consensus 293 ~~~~~C~IC~~~~~-~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEV-SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBC-CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCC-ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 34579999998764 36667987 45 788999998 689999998864
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=81.38 E-value=0.72 Score=32.52 Aligned_cols=46 Identities=9% Similarity=0.207 Sum_probs=33.5
Q ss_pred CeeeEeccCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 61 VECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 61 ~~CRIC~e~~~~~~Li~-PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
..|-||++-..+ +.+. +|. .-.=+.|+++|++..+ +|+++++++..
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCCC-CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 467888776653 5555 443 4677899999999765 49999988753
No 71
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=80.80 E-value=0.51 Score=34.26 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=35.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 024200 56 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 112 (271)
Q Consensus 56 ~~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y 112 (271)
.+.....|.||.+.+ .|+. |.+=-+..|..||.-.+.. ++.+.|..|...-
T Consensus 8 ~~~~~~~C~vC~~~~---~ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 8 NLAPGARCGVCGDGT---DVLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTCCCTTTSCCT---TCEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCCcCCCCCCC---eEEE---CCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345567899997543 2332 3344589999999777765 4789999998653
No 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=77.01 E-value=0.52 Score=34.64 Aligned_cols=44 Identities=18% Similarity=0.619 Sum_probs=32.7
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~-vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
...|.||++... +....||. +. .=..|+.+| ..|++|+.++...
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC-cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 458999988764 36678987 23 457898877 3999999988643
No 73
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.39 E-value=1.9 Score=33.26 Aligned_cols=52 Identities=23% Similarity=0.549 Sum_probs=34.4
Q ss_pred CCCCCCCeeeEeccCCCCCCcc--cccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 024200 55 STPRKLVECRICQDEDADSNME--TPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 112 (271)
Q Consensus 55 ~~~~~~~~CRIC~e~~~~~~Li--~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y 112 (271)
..+.+...| ||..... +.|+ .-|.|. ..|.|..|+. +.. ++.+.|+.|...-
T Consensus 31 ~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCSCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cCCCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344567788 9987654 3454 233453 2699999987 333 4689999997654
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.94 E-value=8.2 Score=30.16 Aligned_cols=53 Identities=25% Similarity=0.524 Sum_probs=35.9
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 024200 59 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~---~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~ 114 (271)
....|.||-++- .++.+..-|+=- ---|=+.|++-=.+ .++..|..||.+|+-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC--~FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNEC--GFPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSS--CCCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeecc--CChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 457999998773 344444444321 13477899876554 478899999999973
No 75
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.92 E-value=1.6 Score=31.97 Aligned_cols=50 Identities=24% Similarity=0.570 Sum_probs=32.9
Q ss_pred CCCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 024200 57 PRKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 112 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~--PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y 112 (271)
+.+...| ||..... +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|...-
T Consensus 13 ~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 4567788 8977653 45553 22343 2699999987 433 4789999997543
No 76
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=62.19 E-value=1.3 Score=33.68 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=34.1
Q ss_pred CCCCCeeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024200 57 PRKLVECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (271)
Q Consensus 57 ~~~~~~CRIC~e~~--~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (271)
..+...|.||...+ +++.|+ -| .+=-..+|..|+.-=..-+|.+.|..|...-
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~C--D~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-FC--DMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-EC--SSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-EC--CCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34567899998775 223333 22 2334678999986433345789999997653
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=57.54 E-value=1.5 Score=32.11 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=33.0
Q ss_pred CCCCeeeEeccCC--CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccc
Q 024200 58 RKLVECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ 111 (271)
Q Consensus 58 ~~~~~CRIC~e~~--~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~ 111 (271)
.+...|.||...+ +++.|+ - |.+=-+.+|..|+.-=..-+|.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll-~--CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVIL-F--CDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEE-E--CSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEE-E--CCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567899998775 333443 2 2233468999998633234578999999753
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=52.50 E-value=2.1 Score=33.11 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=26.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH
Q 024200 57 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN 98 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~ 98 (271)
..+...|.||.+.++.++|+ - |.+=-+..|..||.-+..
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll-~--C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQF-F--CTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSE-E--CSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCe-E--CCCCCCCcChHHhCCccc
Confidence 35677899998876544444 2 233357899999976654
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=51.69 E-value=1.5 Score=31.80 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 113 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y~ 113 (271)
.+...|.||...++...|+. |.+=-.+.|..|+.--... .+.+.|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999987765444543 3344489999997643332 26789999976553
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=49.20 E-value=3.2 Score=27.77 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=29.3
Q ss_pred eeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 024200 62 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 110 (271)
Q Consensus 62 ~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~ 110 (271)
.|.+|...++++.|+. |.+=-+..|..||.-=+.+ ++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888887765444442 3344578999998532222 46788988864
No 81
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=43.36 E-value=1.7 Score=30.67 Aligned_cols=47 Identities=23% Similarity=0.560 Sum_probs=29.9
Q ss_pred CCCCeeeEeccCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 024200 58 RKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 110 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~--PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~ 110 (271)
++...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|..
T Consensus 8 ~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 456677 8877653 44542 23343 2689999987 433 36788888864
No 82
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=43.27 E-value=8 Score=30.56 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=35.2
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGY 116 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~y 116 (271)
..-.|+.|+-+.. .|+. |. -+|.=..||..-+..++ .|+||+++.....
T Consensus 27 G~~nCKsCWf~~k--~LV~---C~--dHYLCl~CLtlmL~~Sd--rCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVE---CN--NHYLCLNCLTLLLSVSN--RCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCS--SEEE---CS--SCEEEHHHHHHTCSSSS--EETTTTEECCCCS
T ss_pred CcccChhhccccC--Ceee---ec--chhhHHHHHHHHHhhcc--CCcccCCcCCcce
Confidence 4567999987764 4442 32 48899999887665544 9999999886544
No 83
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=42.72 E-value=34 Score=23.16 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=17.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 024200 211 QLFLRTAGIVLPIYVMVKAVTALQRHRYQQV 241 (271)
Q Consensus 211 l~~Lr~aGillP~yi~~~ai~~~q~~r~~~~ 241 (271)
....-..| +|-+.|++-.+-.+-|||++++
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 33455566 4435566666677777776653
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=39.90 E-value=6.7 Score=27.49 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=32.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQ 111 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~ 111 (271)
.....|.+|...+ .|+. |.+=-+..|..||.-=+.+ ++.+.|..|..+
T Consensus 9 ~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456899997643 3322 3344579999998754332 578999999753
No 85
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.13 E-value=14 Score=26.64 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=33.5
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH-------HhCCcccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN-------EKGNTTCEICQQQFKP 114 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~-------~kg~~~CEICk~~y~~ 114 (271)
...| ||........|+.==.|. .|.|..|+.-=.. ......|+.|.....+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 5678 887776545565422453 8999999843221 2467899999876543
No 86
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.32 E-value=13 Score=26.66 Aligned_cols=34 Identities=35% Similarity=0.752 Sum_probs=20.2
Q ss_pred CCCCCeeeEeccCCCCCCccccc--ccCCCCccccHHHH
Q 024200 57 PRKLVECRICQDEDADSNMETPC--SCCGSLKYAHRRCV 93 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li~PC--~C~GSlk~vH~~CL 93 (271)
+.....|-+|.....++..---| .| .+|.|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C---~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASC---QKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTT---CCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCc---cccCchhcc
Confidence 34566899998875433322233 35 389999997
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.87 E-value=2.5 Score=29.06 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=27.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 110 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~ 110 (271)
.....|.+|.... .|+. |.+=-+..|..||.-=+.. ++.+.|..|..
T Consensus 7 ~~~~~C~vC~~~g---~ll~---Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG---QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS---CCEE---CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC---eEEE---cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4566799997653 2321 3344478888887633222 35677777753
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.25 E-value=3 Score=31.78 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH--HhCCccccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN--EKGNTTCEICQQQ 111 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~--~kg~~~CEICk~~ 111 (271)
.+...|.||....+.+.|+ - |.+=-+..|..||.-=+. -++.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll-~--CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLL-F--CDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCE-E--CTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEE-E--cCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456799998776433333 2 223346899999752222 2478899999754
No 89
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.50 E-value=37 Score=24.56 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=34.4
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccccc
Q 024200 58 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKP 114 (271)
Q Consensus 58 ~~~~~CRIC~e~~~-~~~Li~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y~~ 114 (271)
.+...| ||....+ +..|+.==.|. .|.|..|+.-=-.. .....|+.|.....+
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 345677 8877654 45565433453 89999998533322 257899999877643
No 90
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.48 E-value=2.6 Score=31.85 Aligned_cols=53 Identities=17% Similarity=0.392 Sum_probs=36.3
Q ss_pred CCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHHH------HhCCcccccccccccc
Q 024200 59 KLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCN------EKGNTTCEICQQQFKP 114 (271)
Q Consensus 59 ~~~~CRIC~e~~~--~~~Li~PC~C~GSlk~vH~~CL~rWi~------~kg~~~CEICk~~y~~ 114 (271)
....|.+|...+. ++.|+. |.+=-+..|..|+.-=+. -++.+.|..|....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4678999988754 244443 333346889999875543 3578999999877653
No 91
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.71 E-value=49 Score=23.95 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=33.4
Q ss_pred CCCCCCCeeeEeccCCCCCCccccc--ccCCCCccccHHHHHHHHHH-------hCCcccccccccc
Q 024200 55 STPRKLVECRICQDEDADSNMETPC--SCCGSLKYAHRRCVQRWCNE-------KGNTTCEICQQQF 112 (271)
Q Consensus 55 ~~~~~~~~CRIC~e~~~~~~Li~PC--~C~GSlk~vH~~CL~rWi~~-------kg~~~CEICk~~y 112 (271)
..+.....| ||...++.+.|+.== .|. .|.|..|+.-=-.. .....|+.|+..-
T Consensus 11 ~~~~~~~~C-iC~~~~~~g~MI~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETDSMIQCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCSCEEECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCCCCEEe-ECCCcCCCCCEEEECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 344577889 898875555665311 354 49999997422111 1367898887643
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=30.65 E-value=3.6 Score=35.16 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=34.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 024200 59 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 113 (271)
Q Consensus 59 ~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y~ 113 (271)
....|.+|..+++ |+ - |.|--+..|..||.-.+.. +|.+.|..|...-+
T Consensus 6 ~~~~C~~C~~~g~---ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE---EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCc---eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3457999976542 32 2 4555689999998655543 57899999987654
No 93
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=28.48 E-value=6.8 Score=38.31 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHHh---CCccccccccccccc
Q 024200 58 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEK---GNTTCEICQQQFKPG 115 (271)
Q Consensus 58 ~~~~~CRIC~e~~~-~~~Li~PC~C~GSlk~vH~~CL~rWi~~k---g~~~CEICk~~y~~~ 115 (271)
.+...| ||....+ ++.|+.=-.|. .|.|..|+.-=-... +...|+.|.....+.
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcCcc
Confidence 345566 8876643 45676644564 799999985322221 468999999765543
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=27.60 E-value=31 Score=28.51 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=32.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH---------HhCCccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN---------EKGNTTCEICQ 109 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~---------~kg~~~CEICk 109 (271)
+....|++|.++++ |+ .|.+=.+-.|..||..=+. ..+.+.|..|.
T Consensus 61 g~~d~C~vC~~GG~---Ll---cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp SCBCSCSSSCCCSS---EE---ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCeecccCCCCc---EE---eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 45679999987763 22 1223357899999997652 46899999996
No 95
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=25.74 E-value=44 Score=27.17 Aligned_cols=46 Identities=22% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHH------H---HhCCccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWC------N---EKGNTTCEICQ 109 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi------~---~kg~~~CEICk 109 (271)
+....|++|.++.+ |+ -|++-.+-.|.+||.+=+ + .++.+.|-.|.
T Consensus 55 g~~~~C~vC~dGG~---Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 55 GMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp SCBSSCTTTCCCSE---EE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCcCeecCCCCe---eE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 45678999987653 22 134446899999999742 2 36789999994
No 96
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=24.58 E-value=12 Score=28.71 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=30.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHH-HhCCcccccccc
Q 024200 58 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN-EKGNTTCEICQQ 110 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~-~kg~~~CEICk~ 110 (271)
.+...| ||....+++.|+. |.+=-++.|..|+.-=.. ..+.+.|+.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~---Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMIC---CDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEE---BTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEE---cCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345678 8877666666664 333357999999742111 124689999963
No 97
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.14 E-value=26 Score=18.16 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 024200 103 TTCEICQQQFKP 114 (271)
Q Consensus 103 ~~CEICk~~y~~ 114 (271)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 469999988864
No 98
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.02 E-value=38 Score=22.93 Aligned_cols=18 Identities=17% Similarity=0.637 Sum_probs=13.1
Q ss_pred CcccccccccccccccCC
Q 024200 102 NTTCEICQQQFKPGYTAP 119 (271)
Q Consensus 102 ~~~CEICk~~y~~~yt~p 119 (271)
...|.+|++.|.+..-.|
T Consensus 4 ~y~C~vCGyvyd~~~Gd~ 21 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN 21 (46)
T ss_dssp CEEETTTCCEECGGGGTT
T ss_pred EEECCCCCeEEeCCcCCC
Confidence 468999999998654333
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=23.52 E-value=5.1 Score=28.03 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=33.1
Q ss_pred CCCCeeeEeccCCC--CCCcccccccCCCCccccHHHHHHHH-----HHhCCccccccccc
Q 024200 58 RKLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWC-----NEKGNTTCEICQQQ 111 (271)
Q Consensus 58 ~~~~~CRIC~e~~~--~~~Li~PC~C~GSlk~vH~~CL~rWi-----~~kg~~~CEICk~~ 111 (271)
.+...|.+|..... ++.|+. |.+=-+..|..|+.-=+ ..++.+.|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999987642 234432 33334788999986433 24578999998754
No 100
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.81 E-value=25 Score=18.35 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=9.8
Q ss_pred Ccccccccccccc
Q 024200 102 NTTCEICQQQFKP 114 (271)
Q Consensus 102 ~~~CEICk~~y~~ 114 (271)
...|+.|+..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 3579999988853
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.69 E-value=35 Score=26.35 Aligned_cols=34 Identities=18% Similarity=0.460 Sum_probs=21.6
Q ss_pred CCCeeeEeccCCC------CCCcccccccCCCCccccHHHHHH
Q 024200 59 KLVECRICQDEDA------DSNMETPCSCCGSLKYAHRRCVQR 95 (271)
Q Consensus 59 ~~~~CRIC~e~~~------~~~Li~PC~C~GSlk~vH~~CL~r 95 (271)
....|.+|+..++ .++|+ .|.+=-+..|..||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll---~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI---SCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE---ECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce---EhhhcCCCCCCchhcC
Confidence 3468999987642 12454 2334457899999963
No 102
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=22.59 E-value=8.4 Score=32.12 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=32.7
Q ss_pred CCeeeEeccCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 024200 60 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 113 (271)
Q Consensus 60 ~~~CRIC~e~~~~~~Li~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEICk~~y~ 113 (271)
...|.+|..+++ |+ - |.+--+..|..|+.--+.. +|.+.|..|...=+
T Consensus 4 ~~~C~~C~~~g~---ll-~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNGGE---LL-C--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCCSS---CE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCCCe---ee-e--cCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 457999986543 32 2 4444578999997655443 57899999986543
No 103
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=22.45 E-value=10 Score=28.91 Aligned_cols=30 Identities=23% Similarity=0.749 Sum_probs=21.7
Q ss_pred hCCcccccccccccccccCCCCcccccccccccccCc
Q 024200 100 KGNTTCEICQQQFKPGYTAPPPLFQFGNIPMNFRGNW 136 (271)
Q Consensus 100 kg~~~CEICk~~y~~~yt~p~~~~~~~~~~~~~r~~~ 136 (271)
.+...|.+|+..|+...+ ...-|++++..|
T Consensus 45 ~g~l~C~~Cg~~~~~~i~-------~L~epiDVYs~W 74 (85)
T 1wii_A 45 TGVISCTVCLEEFQTPIT-------YLSEPVDVYSDW 74 (85)
T ss_dssp EEEEEESSSCCEEEEECC-------SSCCTTHHHHHH
T ss_pred EEEEEcccCCCeEEeccC-------ccCcchhhHHHH
Confidence 467899999999976432 123478888877
No 104
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.34 E-value=1e+02 Score=22.33 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.3
Q ss_pred Ccccccccccccccc
Q 024200 102 NTTCEICQQQFKPGY 116 (271)
Q Consensus 102 ~~~CEICk~~y~~~y 116 (271)
...|.+|++.|.+.-
T Consensus 7 ~y~C~vCGyiYd~~~ 21 (70)
T 1dx8_A 7 KYECEACGYIYEPEK 21 (70)
T ss_dssp CEEETTTCCEECTTT
T ss_pred eEEeCCCCEEEcCCC
Confidence 578999999998654
No 105
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.31 E-value=28 Score=18.15 Aligned_cols=12 Identities=33% Similarity=0.957 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 024200 103 TTCEICQQQFKP 114 (271)
Q Consensus 103 ~~CEICk~~y~~ 114 (271)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 579999998864
No 106
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.60 E-value=24 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.4
Q ss_pred CcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 024200 74 NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 115 (271)
Q Consensus 74 ~Li~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y~~~ 115 (271)
.|..| .|+|.+.|.- .+|...|+-|+..|.+.
T Consensus 10 iL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEE
T ss_pred HhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCC
Confidence 45667 7888877642 35778999999999754
No 107
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.54 E-value=7.1 Score=29.98 Aligned_cols=47 Identities=26% Similarity=0.601 Sum_probs=31.2
Q ss_pred CCCCeeeEeccCCCCCCcc--cccccCCCCccccHHHHHHHHHH--hCCccccc-ccc
Q 024200 58 RKLVECRICQDEDADSNME--TPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEI-CQQ 110 (271)
Q Consensus 58 ~~~~~CRIC~e~~~~~~Li--~PC~C~GSlk~vH~~CL~rWi~~--kg~~~CEI-Ck~ 110 (271)
.+...| ||...+. +.|+ .-|.|. ..|.|..|+. +.. ++.+.|+. |..
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~--~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACP--FEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCS--CSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCc--cccCcCccCC--CCcCCCCCccCChhhcc
Confidence 456788 8977543 3454 344554 3799999986 322 46899999 874
No 108
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=21.51 E-value=1.2e+02 Score=19.91 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=23.1
Q ss_pred CCCchHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 024200 202 NDYSFPIFLQLFLRTAGIVLPIYVMVKAVTALQ 234 (271)
Q Consensus 202 ~~~s~~lf~l~~Lr~aGillP~yi~~~ai~~~q 234 (271)
++|+-+.+-..+-=..|.++|...|+-..-.+|
T Consensus 3 g~~aa~~LPsI~VPlVglvfPai~Mallf~yIe 35 (38)
T 1jb0_I 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chhhhhhCChhhHhHHHHHHHHHHHHHHHHhhc
Confidence 456655455556677899999998887755554
No 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=20.95 E-value=15 Score=30.13 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=33.7
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccc
Q 024200 58 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQF 112 (271)
Q Consensus 58 ~~~~~CRIC~e~~~-~~~Li~PC~C~GSlk~vH~~CL~rWi~~---kg~~~CEICk~~y 112 (271)
.+...| +|....+ .+.|+.=-.| -.|.|..|+.---.. .+...|+.|...-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 356788 9987653 4456543344 489999998532222 4688999998654
No 110
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.24 E-value=21 Score=18.59 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 024200 103 TTCEICQQQFKP 114 (271)
Q Consensus 103 ~~CEICk~~y~~ 114 (271)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 479999998864
No 111
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.74 E-value=27 Score=18.29 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.1
Q ss_pred Ccccccccccccc
Q 024200 102 NTTCEICQQQFKP 114 (271)
Q Consensus 102 ~~~CEICk~~y~~ 114 (271)
...|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 3579999998863
No 112
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=14 Score=26.67 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=31.3
Q ss_pred CCCCCeeeEeccCCCCCCcc--cccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 024200 57 PRKLVECRICQDEDADSNME--TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 112 (271)
Q Consensus 57 ~~~~~~CRIC~e~~~~~~Li--~PC~C~GSlk~vH~~CL~rWi~~kg~~~CEICk~~y 112 (271)
+++...| ||...+. +.|+ .-|.|. ..+.|..|+.-=-...+.+.|+.|....
T Consensus 3 ~~~~~yC-~C~~~~~-g~MI~CD~cdC~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY-GEMVGCDNQDCP--IEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCCC-SSEECCSCTTCS--CCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCCC-CCEeEeCCCCCC--ccCCcccccccCcCCCCCEECCCCCccc
Confidence 3455667 4766543 3554 234443 3799999986211124678899997654
No 113
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=20.02 E-value=3.2e+02 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=13.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q 024200 213 FLRTAGIVLPIYVMVKAVTAL 233 (271)
Q Consensus 213 ~Lr~aGillP~yi~~~ai~~~ 233 (271)
++-..++++|+.+|+-.-..+
T Consensus 189 ~~~~~~~~~p~~ii~~~y~~I 209 (467)
T 3uon_A 189 GTAIAAFYLPVIIMTVLYWHI 209 (467)
T ss_dssp HHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888887763333
Done!