Query 024201
Match_columns 271
No_of_seqs 305 out of 1435
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0450 AhpC Peroxiredoxin [Po 100.0 3E-42 6.5E-47 282.2 20.9 190 78-270 3-193 (194)
2 PTZ00137 2-Cys peroxiredoxin; 100.0 4.3E-40 9.4E-45 286.8 21.5 189 78-269 68-257 (261)
3 PRK15000 peroxidase; Provision 100.0 1.3E-39 2.9E-44 275.5 22.6 190 78-270 2-195 (200)
4 KOG0852 Alkyl hydroperoxide re 100.0 4.6E-40 9.9E-45 262.6 18.1 191 78-270 4-194 (196)
5 PRK10382 alkyl hydroperoxide r 100.0 1.2E-39 2.5E-44 272.7 20.6 186 78-267 2-187 (187)
6 PTZ00253 tryparedoxin peroxida 100.0 1.5E-38 3.2E-43 269.4 21.4 191 78-270 6-197 (199)
7 PRK13190 putative peroxiredoxi 100.0 4.7E-38 1E-42 266.7 21.7 185 78-269 2-186 (202)
8 PRK13191 putative peroxiredoxi 100.0 1.3E-37 2.9E-42 265.9 21.8 185 78-269 7-197 (215)
9 TIGR03137 AhpC peroxiredoxin. 100.0 1E-36 2.2E-41 255.7 20.2 182 79-264 3-184 (187)
10 PRK13189 peroxiredoxin; Provis 100.0 2.8E-36 6E-41 259.1 22.1 185 78-269 9-199 (222)
11 cd03016 PRX_1cys Peroxiredoxin 100.0 4E-36 8.7E-41 255.2 21.2 182 80-267 1-184 (203)
12 cd03015 PRX_Typ2cys Peroxiredo 100.0 3.6E-35 7.7E-40 243.4 20.9 172 80-253 1-173 (173)
13 PRK13599 putative peroxiredoxi 100.0 1.1E-34 2.4E-39 247.8 21.0 183 78-266 2-189 (215)
14 COG1225 Bcp Peroxiredoxin [Pos 100.0 4.9E-31 1.1E-35 211.8 18.2 147 78-236 4-156 (157)
15 cd03018 PRX_AhpE_like Peroxire 100.0 1.1E-27 2.5E-32 192.9 16.5 146 78-233 1-148 (149)
16 KOG0854 Alkyl hydroperoxide re 100.0 1.5E-27 3.3E-32 190.8 15.6 183 78-266 6-196 (224)
17 PRK00522 tpx lipid hydroperoxi 100.0 1E-26 2.3E-31 191.6 18.2 147 73-233 14-166 (167)
18 PLN02399 phospholipid hydroper 99.9 2.1E-26 4.6E-31 198.5 18.8 196 21-236 15-234 (236)
19 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.2E-26 2.6E-31 180.9 15.7 124 80-214 1-124 (124)
20 cd03014 PRX_Atyp2cys Peroxired 99.9 2.4E-26 5.1E-31 184.3 16.7 139 79-230 1-142 (143)
21 PRK09437 bcp thioredoxin-depen 99.9 2.5E-26 5.4E-31 186.6 16.7 144 78-233 4-153 (154)
22 PF08534 Redoxin: Redoxin; In 99.9 3.4E-26 7.4E-31 183.9 15.3 132 79-220 1-136 (146)
23 cd03017 PRX_BCP Peroxiredoxin 99.9 4.1E-26 9E-31 181.8 15.0 137 82-230 1-140 (140)
24 cd03013 PRX5_like Peroxiredoxi 99.9 9.3E-26 2E-30 183.7 15.4 134 80-222 1-144 (155)
25 cd02969 PRX_like1 Peroxiredoxi 99.9 9.4E-25 2E-29 180.4 17.0 152 81-250 1-171 (171)
26 cd02971 PRX_family Peroxiredox 99.9 3.4E-24 7.4E-29 170.6 16.2 134 83-226 1-137 (140)
27 cd02970 PRX_like2 Peroxiredoxi 99.9 5.4E-24 1.2E-28 170.9 13.7 125 83-217 1-148 (149)
28 PTZ00056 glutathione peroxidas 99.9 9E-23 2E-27 172.7 17.7 143 78-236 13-178 (199)
29 PLN02412 probable glutathione 99.9 9.5E-23 2.1E-27 168.0 14.8 139 81-235 6-163 (167)
30 cd03012 TlpA_like_DipZ_like Tl 99.9 4.8E-23 1E-27 161.8 12.3 108 96-218 12-125 (126)
31 cd00340 GSH_Peroxidase Glutath 99.9 5.1E-23 1.1E-27 167.0 12.0 122 84-218 2-142 (152)
32 PTZ00256 glutathione peroxidas 99.9 9.1E-23 2E-27 170.6 12.6 141 80-235 16-180 (183)
33 PRK03147 thiol-disulfide oxido 99.9 5E-22 1.1E-26 163.9 16.8 137 77-235 34-171 (173)
34 PRK15412 thiol:disulfide inter 99.9 1.3E-22 2.9E-27 169.9 13.4 122 78-219 39-163 (185)
35 TIGR02661 MauD methylamine deh 99.9 2.3E-22 5.1E-27 168.9 14.5 132 78-233 46-179 (189)
36 TIGR02540 gpx7 putative glutat 99.9 3.1E-22 6.8E-27 162.5 13.9 133 84-235 2-152 (153)
37 KOG0855 Alkyl hydroperoxide re 99.9 3E-21 6.5E-26 153.5 15.5 147 78-234 63-210 (211)
38 cd03010 TlpA_like_DsbE TlpA-li 99.9 3.4E-21 7.3E-26 151.3 12.8 118 82-218 1-120 (127)
39 TIGR00385 dsbE periplasmic pro 99.9 4.7E-21 1E-25 158.8 14.2 132 78-235 34-170 (173)
40 cd02967 mauD Methylamine utili 99.9 1.1E-20 2.3E-25 145.3 13.8 110 85-215 1-112 (114)
41 cd02968 SCO SCO (an acronym fo 99.9 1.2E-20 2.6E-25 150.6 13.4 121 83-215 1-140 (142)
42 cd03008 TryX_like_RdCVF Trypar 99.8 6.9E-21 1.5E-25 152.8 10.2 102 99-215 17-129 (146)
43 PRK14018 trifunctional thiored 99.8 1.6E-19 3.5E-24 170.9 16.3 132 78-233 32-170 (521)
44 cd02966 TlpA_like_family TlpA- 99.8 2.8E-19 6E-24 135.7 12.8 112 86-215 1-114 (116)
45 TIGR01626 ytfJ_HI0045 conserve 99.8 4.7E-19 1E-23 147.0 13.2 142 78-235 23-182 (184)
46 PRK10606 btuE putative glutath 99.8 2.2E-18 4.8E-23 143.6 16.2 139 82-235 3-180 (183)
47 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 1.1E-18 2.4E-23 135.9 11.7 109 85-217 1-111 (123)
48 PLN02919 haloacid dehalogenase 99.8 2.2E-18 4.7E-23 176.8 15.7 138 78-235 391-535 (1057)
49 cd02964 TryX_like_family Trypa 99.8 1.9E-18 4.1E-23 136.8 11.2 102 98-215 8-116 (132)
50 cd03009 TryX_like_TryX_NRX Try 99.8 1.1E-18 2.4E-23 137.7 9.4 110 94-215 5-116 (131)
51 PRK13728 conjugal transfer pro 99.7 3.6E-17 7.7E-22 135.2 13.5 120 79-236 50-171 (181)
52 COG2077 Tpx Peroxiredoxin [Pos 99.7 4.9E-16 1.1E-20 122.2 13.4 135 69-216 10-148 (158)
53 PF13905 Thioredoxin_8: Thiore 99.7 2.1E-16 4.6E-21 117.6 10.5 91 107-211 1-95 (95)
54 COG0678 AHP1 Peroxiredoxin [Po 99.7 8E-16 1.7E-20 120.8 12.2 148 78-231 3-164 (165)
55 PF02630 SCO1-SenC: SCO1/SenC; 99.7 6.2E-16 1.3E-20 128.2 10.1 128 80-216 28-172 (174)
56 COG1999 Uncharacterized protei 99.6 8.2E-15 1.8E-19 124.6 12.6 139 86-236 49-204 (207)
57 KOG0541 Alkyl hydroperoxide re 99.6 1.6E-14 3.5E-19 114.1 9.1 148 77-230 8-169 (171)
58 TIGR02738 TrbB type-F conjugat 99.6 1.5E-14 3.1E-19 117.3 9.2 103 97-234 44-151 (153)
59 COG0386 BtuE Glutathione perox 99.5 2.3E-13 5E-18 107.7 14.6 137 83-235 4-159 (162)
60 cd02950 TxlA TRX-like protein 99.4 3.1E-12 6.8E-17 102.6 10.2 99 99-236 10-110 (142)
61 KOG2792 Putative cytochrome C 99.4 1.1E-12 2.4E-17 111.9 7.5 140 85-233 120-272 (280)
62 KOG1651 Glutathione peroxidase 99.4 5.3E-12 1.2E-16 101.1 9.9 126 81-217 11-154 (171)
63 KOG2501 Thioredoxin, nucleored 99.3 7.4E-12 1.6E-16 100.2 9.8 107 94-215 19-132 (157)
64 TIGR02740 TraF-like TraF-like 99.3 6.8E-12 1.5E-16 111.0 10.4 121 83-235 140-263 (271)
65 cd02985 TRX_CDSP32 TRX family, 99.3 2.7E-11 5.8E-16 91.7 11.5 89 103-232 11-99 (103)
66 cd02963 TRX_DnaJ TRX domain, D 99.2 2.7E-10 5.8E-15 87.4 11.1 88 106-234 23-110 (111)
67 cd02948 TRX_NDPK TRX domain, T 99.2 2.5E-10 5.4E-15 86.2 10.7 85 107-234 17-101 (102)
68 cd02999 PDI_a_ERp44_like PDIa 99.2 1.7E-10 3.7E-15 86.9 9.6 85 103-230 14-98 (100)
69 cd02951 SoxW SoxW family; SoxW 99.2 1.2E-10 2.6E-15 91.0 9.0 101 109-236 15-119 (125)
70 cd02954 DIM1 Dim1 family; Dim1 99.2 5.8E-10 1.3E-14 85.7 11.6 91 108-235 14-110 (114)
71 cd02956 ybbN ybbN protein fami 99.1 1E-09 2.2E-14 81.5 10.5 85 106-232 11-95 (96)
72 PF13098 Thioredoxin_2: Thiore 99.1 4.1E-10 8.9E-15 85.9 7.3 104 107-232 5-112 (112)
73 cd02953 DsbDgamma DsbD gamma f 99.0 1.5E-09 3.3E-14 81.9 8.9 89 107-232 11-103 (104)
74 PRK09381 trxA thioredoxin; Pro 99.0 2.8E-09 6.1E-14 81.1 9.8 86 108-234 21-106 (109)
75 cd03000 PDI_a_TMX3 PDIa family 99.0 5.1E-09 1.1E-13 79.1 9.3 88 106-234 13-102 (104)
76 PF00837 T4_deiodinase: Iodoth 99.0 8E-09 1.7E-13 88.3 11.3 140 78-235 73-236 (237)
77 cd02994 PDI_a_TMX PDIa family, 98.9 9.6E-09 2.1E-13 77.0 10.2 85 106-233 16-100 (101)
78 PLN00410 U5 snRNP protein, DIM 98.9 2E-08 4.4E-13 80.1 12.4 108 107-250 22-136 (142)
79 KOG0907 Thioredoxin [Posttrans 98.9 1.1E-08 2.3E-13 77.8 10.4 83 108-233 21-103 (106)
80 KOG0910 Thioredoxin-like prote 98.9 8.7E-09 1.9E-13 82.0 10.0 86 108-234 61-146 (150)
81 cd02986 DLP Dim1 family, Dim1- 98.9 1.9E-08 4.1E-13 76.9 11.2 91 108-235 14-110 (114)
82 PRK10996 thioredoxin 2; Provis 98.9 2.1E-08 4.6E-13 80.0 11.6 85 109-234 53-137 (139)
83 cd03002 PDI_a_MPD1_like PDI fa 98.9 1.1E-08 2.3E-13 77.6 9.2 69 107-210 18-86 (109)
84 cd03005 PDI_a_ERp46 PDIa famil 98.9 8.7E-09 1.9E-13 77.0 8.4 73 110-218 18-92 (102)
85 PHA02278 thioredoxin-like prot 98.9 1.3E-08 2.9E-13 77.0 9.4 76 109-217 15-90 (103)
86 cd02993 PDI_a_APS_reductase PD 98.9 1.5E-08 3.2E-13 77.3 9.4 87 106-230 20-107 (109)
87 cd02949 TRX_NTR TRX domain, no 98.9 2.7E-08 5.9E-13 74.2 10.5 72 109-217 14-85 (97)
88 cd02962 TMX2 TMX2 family; comp 98.9 2.3E-08 5E-13 80.9 10.0 79 109-217 48-126 (152)
89 cd03003 PDI_a_ERdj5_N PDIa fam 98.9 2.2E-08 4.8E-13 75.1 9.3 72 106-215 17-88 (101)
90 PF00255 GSHPx: Glutathione pe 98.8 2.6E-08 5.6E-13 75.8 9.3 82 85-178 2-91 (108)
91 cd03006 PDI_a_EFP1_N PDIa fami 98.8 2.6E-08 5.7E-13 76.7 9.2 84 106-230 27-111 (113)
92 cd03004 PDI_a_ERdj5_C PDIa fam 98.8 4E-08 8.7E-13 73.9 9.8 73 109-217 20-92 (104)
93 cd02997 PDI_a_PDIR PDIa family 98.8 5.3E-08 1.2E-12 72.9 10.0 76 107-217 17-93 (104)
94 cd02984 TRX_PICOT TRX domain, 98.8 6.4E-08 1.4E-12 71.7 10.2 72 109-217 15-86 (97)
95 cd02959 ERp19 Endoplasmic reti 98.8 2.1E-08 4.5E-13 77.7 7.6 81 103-217 15-95 (117)
96 cd02996 PDI_a_ERp44 PDIa famil 98.8 5E-08 1.1E-12 74.1 9.7 83 109-230 19-106 (108)
97 TIGR01126 pdi_dom protein disu 98.8 6.6E-08 1.4E-12 71.9 9.8 88 106-234 12-100 (102)
98 PF00085 Thioredoxin: Thioredo 98.8 1.3E-07 2.8E-12 70.4 11.2 84 109-233 18-101 (103)
99 PTZ00051 thioredoxin; Provisio 98.7 8.3E-08 1.8E-12 71.3 9.2 71 109-217 19-89 (98)
100 TIGR01068 thioredoxin thioredo 98.7 1.6E-07 3.5E-12 69.5 10.5 85 109-234 15-99 (101)
101 TIGR01295 PedC_BrcD bacterioci 98.7 9.7E-08 2.1E-12 74.5 9.6 87 108-218 23-109 (122)
102 cd03065 PDI_b_Calsequestrin_N 98.7 1.7E-07 3.6E-12 72.9 10.4 88 107-235 26-118 (120)
103 cd02989 Phd_like_TxnDC9 Phosdu 98.7 1.9E-07 4E-12 71.9 10.4 75 109-221 23-97 (113)
104 cd02975 PfPDO_like_N Pyrococcu 98.7 1.6E-07 3.5E-12 72.2 9.7 67 105-208 19-85 (113)
105 cd02998 PDI_a_ERp38 PDIa famil 98.7 1.4E-07 3E-12 70.5 8.3 73 109-215 19-92 (105)
106 cd02957 Phd_like Phosducin (Ph 98.6 1.7E-07 3.6E-12 72.0 8.4 71 109-218 25-95 (113)
107 cd02965 HyaE HyaE family; HyaE 98.6 2.5E-07 5.5E-12 70.7 9.1 71 110-217 29-101 (111)
108 cd02961 PDI_a_family Protein D 98.6 1.9E-07 4.1E-12 68.7 8.2 82 110-230 17-99 (101)
109 cd02992 PDI_a_QSOX PDIa family 98.6 3.4E-07 7.4E-12 70.5 9.8 68 109-210 20-89 (114)
110 PTZ00443 Thioredoxin domain-co 98.6 3.9E-07 8.5E-12 78.4 10.7 85 110-235 54-138 (224)
111 cd02955 SSP411 TRX domain, SSP 98.6 1.5E-06 3.2E-11 68.0 12.9 101 106-235 14-121 (124)
112 cd02952 TRP14_like Human TRX-r 98.6 2E-07 4.3E-12 72.3 7.2 80 106-214 20-106 (119)
113 PRK00293 dipZ thiol:disulfide 98.6 2.9E-07 6.4E-12 89.6 9.5 96 103-236 470-570 (571)
114 cd03001 PDI_a_P5 PDIa family, 98.5 9.9E-07 2.2E-11 65.8 10.1 84 108-231 18-101 (103)
115 cd02947 TRX_family TRX family; 98.5 1.3E-06 2.8E-11 62.8 10.3 71 109-217 11-81 (93)
116 COG3118 Thioredoxin domain-con 98.5 4.6E-07 9.9E-12 79.7 9.2 73 109-218 44-116 (304)
117 TIGR00424 APS_reduc 5'-adenyly 98.5 8.2E-07 1.8E-11 83.8 10.7 93 106-235 370-462 (463)
118 PF05988 DUF899: Bacterial pro 98.5 6.2E-06 1.4E-10 69.4 14.4 157 81-252 43-206 (211)
119 PF13728 TraF: F plasmid trans 98.5 1.3E-06 2.9E-11 74.7 10.6 88 99-214 112-199 (215)
120 TIGR02739 TraF type-F conjugat 98.5 7.5E-07 1.6E-11 77.9 9.0 104 99-234 142-246 (256)
121 TIGR00411 redox_disulf_1 small 98.4 4E-06 8.7E-11 59.9 10.7 79 111-234 2-80 (82)
122 cd02987 Phd_like_Phd Phosducin 98.4 1.7E-06 3.6E-11 71.8 9.6 70 110-218 85-154 (175)
123 PRK13703 conjugal pilus assemb 98.4 1.5E-06 3.2E-11 75.6 8.7 102 101-234 137-239 (248)
124 PLN02309 5'-adenylylsulfate re 98.4 2.7E-06 5.9E-11 80.3 10.9 92 106-235 364-456 (457)
125 cd02995 PDI_a_PDI_a'_C PDIa fa 98.3 2E-06 4.3E-11 64.1 7.6 65 109-209 19-84 (104)
126 TIGR02187 GlrX_arch Glutaredox 98.3 7E-06 1.5E-10 70.2 10.3 78 104-217 16-96 (215)
127 PTZ00062 glutaredoxin; Provisi 98.3 7.7E-06 1.7E-10 69.3 10.2 62 110-217 19-80 (204)
128 PTZ00102 disulphide isomerase; 98.3 3.6E-06 7.8E-11 80.1 9.2 89 107-235 375-464 (477)
129 cd02988 Phd_like_VIAF Phosduci 98.2 7E-06 1.5E-10 69.1 9.1 73 109-222 103-175 (192)
130 TIGR01130 ER_PDI_fam protein d 98.2 1.2E-05 2.5E-10 76.0 11.1 86 109-234 19-107 (462)
131 PF13911 AhpC-TSA_2: AhpC/TSA 98.2 1.7E-05 3.8E-10 60.9 9.3 79 131-216 2-112 (115)
132 PTZ00102 disulphide isomerase; 98.1 1.9E-05 4.2E-10 75.1 10.5 87 107-235 49-137 (477)
133 cd02958 UAS UAS family; UAS is 98.1 0.0001 2.2E-09 56.5 12.0 91 106-235 16-110 (114)
134 TIGR00412 redox_disulf_2 small 98.1 2.6E-05 5.7E-10 55.5 7.8 61 112-214 2-62 (76)
135 cd02960 AGR Anterior Gradient 98.0 6.2E-05 1.3E-09 59.2 10.3 94 106-236 22-123 (130)
136 cd01659 TRX_superfamily Thiore 98.0 2.9E-05 6.3E-10 51.0 7.4 63 112-208 1-63 (69)
137 cd02973 TRX_GRX_like Thioredox 98.0 5.5E-05 1.2E-09 52.0 8.3 64 111-214 2-65 (67)
138 PF09695 YtfJ_HI0045: Bacteria 98.0 0.0002 4.4E-09 57.6 12.0 144 79-232 2-157 (160)
139 cd03026 AhpF_NTD_C TRX-GRX-lik 98.0 5.9E-05 1.3E-09 55.4 8.3 71 103-214 8-78 (89)
140 PF10417 1-cysPrx_C: C-termina 97.9 8.4E-06 1.8E-10 50.6 2.4 35 234-269 1-39 (40)
141 PF04592 SelP_N: Selenoprotein 97.8 0.00014 3E-09 62.2 9.0 114 81-216 7-127 (238)
142 PF14595 Thioredoxin_9: Thiore 97.8 5.1E-05 1.1E-09 59.8 5.8 80 102-216 36-115 (129)
143 KOG4498 Uncharacterized conser 97.8 0.00014 3.1E-09 59.8 8.5 133 94-233 36-195 (197)
144 PHA02125 thioredoxin-like prot 97.8 0.00041 8.8E-09 49.1 9.7 72 112-232 2-73 (75)
145 KOG0908 Thioredoxin-like prote 97.7 0.00015 3.2E-09 62.4 8.2 75 102-215 16-90 (288)
146 cd02982 PDI_b'_family Protein 97.7 0.00015 3.3E-09 54.0 6.6 66 107-207 12-77 (103)
147 COG0526 TrxA Thiol-disulfide i 97.7 6.5E-05 1.4E-09 55.6 4.4 48 101-151 26-73 (127)
148 TIGR01130 ER_PDI_fam protein d 97.6 0.00026 5.5E-09 66.8 9.3 85 109-234 365-452 (462)
149 KOG0190 Protein disulfide isom 97.5 0.00028 6.1E-09 66.9 7.5 91 106-234 40-130 (493)
150 TIGR02187 GlrX_arch Glutaredox 97.5 0.0013 2.8E-08 56.2 10.9 79 110-233 135-213 (215)
151 smart00594 UAS UAS domain. 97.5 0.0016 3.4E-08 50.6 10.3 92 106-232 26-121 (122)
152 COG4312 Uncharacterized protei 97.3 0.0025 5.4E-08 53.9 9.9 127 99-235 63-214 (247)
153 PF05176 ATP-synt_10: ATP10 pr 97.1 0.0047 1E-07 54.1 10.0 124 82-216 99-234 (252)
154 PF13899 Thioredoxin_7: Thiore 97.1 0.0032 6.9E-08 45.1 7.3 46 106-154 16-64 (82)
155 PF13778 DUF4174: Domain of un 97.0 0.0029 6.3E-08 49.0 7.2 111 101-236 2-112 (118)
156 PRK11509 hydrogenase-1 operon 96.6 0.035 7.5E-07 43.8 10.2 97 101-236 26-124 (132)
157 cd03007 PDI_a_ERp29_N PDIa fam 96.5 0.023 4.9E-07 43.8 8.4 95 107-234 17-114 (116)
158 TIGR02196 GlrX_YruB Glutaredox 96.4 0.041 8.8E-07 37.5 9.0 33 112-152 2-34 (74)
159 PRK10877 protein disulfide iso 96.4 0.034 7.3E-07 48.2 9.9 109 106-236 106-231 (232)
160 PF13192 Thioredoxin_3: Thiore 96.2 0.033 7.1E-07 39.3 7.5 56 118-214 7-62 (76)
161 PF06110 DUF953: Eukaryotic pr 96.2 0.019 4.2E-07 44.4 6.7 76 106-210 18-101 (119)
162 cd02991 UAS_ETEA UAS family, E 96.2 0.066 1.4E-06 41.2 9.7 88 106-235 16-112 (116)
163 PRK11657 dsbG disulfide isomer 96.2 0.015 3.2E-07 51.0 6.8 97 106-214 116-235 (251)
164 KOG0912 Thiol-disulfide isomer 96.1 0.026 5.5E-07 50.3 7.5 87 110-233 15-103 (375)
165 KOG0191 Thioredoxin/protein di 96.0 0.041 8.9E-07 51.2 9.3 84 109-233 48-131 (383)
166 COG4232 Thiol:disulfide interc 96.0 0.0069 1.5E-07 58.3 4.2 96 103-234 470-566 (569)
167 TIGR02200 GlrX_actino Glutared 95.9 0.035 7.5E-07 38.6 6.4 33 112-152 2-34 (77)
168 PF03190 Thioredox_DsbH: Prote 95.8 0.04 8.6E-07 45.0 7.2 105 100-235 30-143 (163)
169 COG2143 Thioredoxin-related pr 95.3 0.12 2.6E-06 41.7 8.0 90 105-215 40-132 (182)
170 cd03020 DsbA_DsbC_DsbG DsbA fa 95.3 0.1 2.2E-06 43.8 8.1 94 106-212 76-184 (197)
171 KOG0190 Protein disulfide isom 95.1 0.019 4.2E-07 54.6 3.5 31 110-141 386-416 (493)
172 KOG1731 FAD-dependent sulfhydr 94.4 0.025 5.4E-07 54.3 2.3 66 110-208 59-126 (606)
173 TIGR02180 GRX_euk Glutaredoxin 94.3 0.12 2.6E-06 36.5 5.4 36 112-151 1-36 (84)
174 PF00462 Glutaredoxin: Glutare 94.1 0.23 4.9E-06 33.0 6.1 37 112-156 1-37 (60)
175 PRK10954 periplasmic protein d 94.0 0.35 7.6E-06 40.9 8.4 39 106-147 36-77 (207)
176 TIGR03143 AhpF_homolog putativ 93.8 0.54 1.2E-05 46.0 10.4 77 110-232 478-554 (555)
177 cd02976 NrdH NrdH-redoxin (Nrd 93.5 0.4 8.7E-06 32.3 6.6 32 113-152 3-34 (73)
178 KOG0191 Thioredoxin/protein di 93.4 0.39 8.5E-06 44.6 8.4 43 108-151 162-205 (383)
179 PF11009 DUF2847: Protein of u 93.4 0.58 1.3E-05 35.3 7.7 75 109-215 20-94 (105)
180 PRK11200 grxA glutaredoxin 1; 93.3 0.36 7.7E-06 34.6 6.3 38 112-152 3-40 (85)
181 KOG3425 Uncharacterized conser 92.9 0.19 4.1E-06 38.7 4.4 50 101-152 18-75 (128)
182 TIGR02190 GlrX-dom Glutaredoxi 92.0 0.77 1.7E-05 32.4 6.5 34 111-152 9-42 (79)
183 cd02066 GRX_family Glutaredoxi 91.6 0.8 1.7E-05 30.6 6.1 41 113-161 3-43 (72)
184 PRK10329 glutaredoxin-like pro 91.4 0.96 2.1E-05 32.3 6.5 31 115-152 5-35 (81)
185 PF02114 Phosducin: Phosducin; 90.6 1 2.2E-05 39.8 7.2 91 110-239 148-241 (265)
186 cd03023 DsbA_Com1_like DsbA fa 90.5 0.49 1.1E-05 37.1 4.6 35 110-147 7-41 (154)
187 cd02972 DsbA_family DsbA famil 90.1 1.1 2.5E-05 31.6 6.0 82 113-206 2-91 (98)
188 TIGR02183 GRXA Glutaredoxin, G 89.9 1.3 2.7E-05 31.9 6.0 36 113-151 3-38 (86)
189 PF13462 Thioredoxin_4: Thiore 89.8 0.96 2.1E-05 35.9 5.9 49 100-150 5-54 (162)
190 TIGR02189 GlrX-like_plant Glut 89.6 1 2.2E-05 33.4 5.5 33 112-152 10-42 (99)
191 COG0695 GrxC Glutaredoxin and 89.3 1.5 3.2E-05 31.2 5.9 38 118-162 8-47 (80)
192 TIGR02194 GlrX_NrdH Glutaredox 89.0 1.6 3.5E-05 30.0 5.8 31 115-152 3-33 (72)
193 cd03029 GRX_hybridPRX5 Glutare 88.9 1.5 3.3E-05 30.0 5.6 32 113-152 4-35 (72)
194 PF06764 DUF1223: Protein of u 88.6 12 0.00026 31.7 11.8 90 112-236 1-98 (202)
195 PHA03050 glutaredoxin; Provisi 88.1 1.2 2.7E-05 33.7 5.1 22 112-134 15-36 (108)
196 PRK15317 alkyl hydroperoxide r 87.7 5 0.00011 38.8 10.3 27 110-137 118-144 (517)
197 cd03419 GRX_GRXh_1_2_like Glut 87.7 2.1 4.6E-05 29.8 5.9 35 112-152 2-36 (82)
198 cd03418 GRX_GRXb_1_3_like Glut 87.5 3.5 7.5E-05 28.2 6.8 32 113-152 3-34 (75)
199 cd03027 GRX_DEP Glutaredoxin ( 86.6 4.1 8.8E-05 28.0 6.7 28 118-152 8-35 (73)
200 KOG4277 Uncharacterized conser 86.5 1.2 2.6E-05 39.9 4.6 77 102-212 37-113 (468)
201 PRK08132 FAD-dependent oxidore 86.1 8 0.00017 37.6 10.8 117 78-234 427-543 (547)
202 COG3054 Predicted transcriptio 85.9 2.3 4.9E-05 34.2 5.5 57 172-235 124-182 (184)
203 TIGR00365 monothiol glutaredox 84.8 5.9 0.00013 29.2 7.2 36 110-152 13-51 (97)
204 PRK10638 glutaredoxin 3; Provi 83.1 5.6 0.00012 28.1 6.3 28 118-152 9-36 (83)
205 PRK06183 mhpA 3-(3-hydroxyphen 83.0 15 0.00034 35.5 11.2 119 78-233 411-529 (538)
206 TIGR03140 AhpF alkyl hydropero 82.6 13 0.00028 36.0 10.4 28 110-138 119-146 (515)
207 cd03028 GRX_PICOT_like Glutare 82.4 5.3 0.00011 28.9 6.0 36 110-152 9-47 (90)
208 PRK12559 transcriptional regul 81.8 6.1 0.00013 31.0 6.5 63 115-191 4-70 (131)
209 PRK01655 spxA transcriptional 81.5 3.2 6.9E-05 32.5 4.8 64 114-191 3-70 (131)
210 TIGR02181 GRX_bact Glutaredoxi 81.0 5.1 0.00011 27.8 5.4 32 113-152 2-33 (79)
211 PRK06184 hypothetical protein; 80.3 20 0.00044 34.3 10.9 108 78-235 386-494 (502)
212 cd02983 P5_C P5 family, C-term 80.2 17 0.00037 28.3 8.5 92 108-235 20-114 (130)
213 cd03019 DsbA_DsbA DsbA family, 79.1 4.1 9E-05 32.8 5.0 39 106-147 14-52 (178)
214 PRK10824 glutaredoxin-4; Provi 79.1 3.2 6.9E-05 31.9 3.9 23 110-133 16-42 (115)
215 PRK13344 spxA transcriptional 77.1 7.4 0.00016 30.5 5.6 63 115-191 4-70 (132)
216 cd03032 ArsC_Spx Arsenate Redu 76.8 7.2 0.00016 29.6 5.4 63 115-191 4-70 (115)
217 PF08235 LNS2: LNS2 (Lipin/Ned 76.2 26 0.00056 28.5 8.6 59 99-166 9-70 (157)
218 PF06491 Disulph_isomer: Disul 76.2 36 0.00077 26.8 8.9 37 198-235 95-131 (136)
219 TIGR03143 AhpF_homolog putativ 76.1 20 0.00043 35.1 9.5 28 181-214 408-438 (555)
220 TIGR01617 arsC_related transcr 75.9 6.3 0.00014 30.0 4.9 60 117-190 5-68 (117)
221 cd03036 ArsC_like Arsenate Red 75.3 5.6 0.00012 30.1 4.4 41 116-163 4-48 (111)
222 cd02979 PHOX_C FAD-dependent P 75.0 44 0.00095 27.2 12.0 122 81-215 1-152 (167)
223 PF05768 DUF836: Glutaredoxin- 74.7 3.9 8.5E-05 29.0 3.2 52 114-178 3-54 (81)
224 PRK12759 bifunctional gluaredo 74.6 9.3 0.0002 36.0 6.5 43 112-162 4-46 (410)
225 KOG3414 Component of the U4/U6 74.0 41 0.00088 26.4 10.2 40 109-151 24-64 (142)
226 cd02977 ArsC_family Arsenate R 73.7 6.3 0.00014 29.2 4.3 42 115-163 3-48 (105)
227 KOG0914 Thioredoxin-like prote 73.5 5.4 0.00012 34.2 4.1 75 110-214 146-220 (265)
228 PF08821 CGGC: CGGC domain; I 73.2 9.2 0.0002 29.0 5.0 47 99-150 27-73 (107)
229 PRK10026 arsenate reductase; P 73.1 28 0.00061 27.7 8.0 92 118-232 9-116 (141)
230 PF07976 Phe_hydrox_dim: Pheno 71.7 14 0.00031 30.2 6.3 111 78-191 30-165 (169)
231 COG2179 Predicted hydrolase of 70.6 9.5 0.00021 31.3 4.8 37 127-163 47-83 (175)
232 PRK08294 phenol 2-monooxygenas 70.4 73 0.0016 31.8 12.1 143 78-234 463-629 (634)
233 TIGR03765 ICE_PFL_4695 integra 70.2 27 0.00059 26.3 6.8 67 127-209 36-102 (105)
234 PHA03075 glutaredoxin-like pro 68.6 4.5 9.9E-05 31.0 2.4 38 110-148 3-40 (123)
235 PTZ00062 glutaredoxin; Provisi 66.6 16 0.00035 30.9 5.7 44 102-152 106-152 (204)
236 PF11072 DUF2859: Protein of u 66.5 32 0.0007 27.4 7.0 67 127-209 74-140 (142)
237 PLN03098 LPA1 LOW PSII ACCUMUL 64.7 19 0.0004 34.3 6.2 66 80-151 272-337 (453)
238 KOG2116 Protein involved in pl 63.4 28 0.00061 34.6 7.2 77 99-185 540-619 (738)
239 PF09673 TrbC_Ftype: Type-F co 63.1 61 0.0013 24.6 7.8 67 130-207 12-80 (113)
240 PF06953 ArsD: Arsenical resis 62.7 71 0.0015 24.8 8.3 90 112-233 4-99 (123)
241 KOG1752 Glutaredoxin and relat 61.9 26 0.00057 26.3 5.4 33 112-152 16-48 (104)
242 COG1651 DsbG Protein-disulfide 61.4 16 0.00035 31.3 4.9 46 95-142 72-117 (244)
243 KOG2603 Oligosaccharyltransfer 61.1 1E+02 0.0022 28.0 9.7 115 109-252 60-181 (331)
244 KOG0911 Glutaredoxin-related p 57.9 6.8 0.00015 33.6 1.8 44 106-153 16-59 (227)
245 TIGR00995 3a0901s06TIC22 chlor 56.3 30 0.00066 30.6 5.7 91 81-190 79-169 (270)
246 COG1393 ArsC Arsenate reductas 55.3 37 0.00081 26.0 5.4 64 113-191 4-71 (117)
247 KOG2507 Ubiquitin regulatory p 54.4 80 0.0017 29.9 8.2 31 182-218 67-97 (506)
248 TIGR03759 conj_TIGR03759 integ 53.9 75 0.0016 26.8 7.3 81 111-210 111-198 (200)
249 PF01106 NifU: NifU-like domai 52.9 31 0.00068 23.6 4.2 34 95-131 14-47 (68)
250 PRK12359 flavodoxin FldB; Prov 52.2 64 0.0014 26.5 6.7 19 202-220 130-148 (172)
251 cd03035 ArsC_Yffb Arsenate Red 51.1 29 0.00064 25.9 4.2 42 115-163 3-48 (105)
252 COG1331 Highly conserved prote 51.0 61 0.0013 32.4 7.4 94 106-233 42-147 (667)
253 PF06053 DUF929: Domain of unk 48.8 30 0.00065 30.3 4.4 32 106-139 57-88 (249)
254 COG4545 Glutaredoxin-related p 47.7 41 0.0009 23.8 4.1 22 113-135 5-26 (85)
255 TIGR02742 TrbC_Ftype type-F co 45.4 1.5E+02 0.0032 23.2 9.8 68 130-209 13-82 (130)
256 PF00571 CBS: CBS domain CBS d 45.1 61 0.0013 20.3 4.6 27 198-232 29-55 (57)
257 PRK13738 conjugal transfer pil 44.6 2E+02 0.0043 24.5 10.0 92 99-216 110-201 (209)
258 PRK10178 D-alanyl-D-alanine di 44.3 1.2E+02 0.0027 25.2 7.2 66 78-154 8-73 (184)
259 COG5429 Uncharacterized secret 44.2 61 0.0013 28.2 5.4 93 110-235 42-140 (261)
260 PHA02087 hypothetical protein 43.6 1.1E+02 0.0023 21.2 5.7 57 145-214 3-59 (83)
261 COG3011 Predicted thiol-disulf 39.6 1.7E+02 0.0037 23.2 7.0 23 110-133 8-30 (137)
262 PF03544 TonB_C: Gram-negative 38.9 45 0.00098 22.7 3.4 36 199-234 18-54 (79)
263 COG3769 Predicted hydrolase (H 38.5 1.1E+02 0.0024 26.6 6.1 31 133-163 30-60 (274)
264 cd07254 Glo_EDI_BRP_like_20 Th 38.4 1.5E+02 0.0033 21.5 6.6 59 142-216 58-116 (120)
265 PF15092 UPF0728: Uncharacteri 37.6 89 0.0019 22.7 4.6 43 110-152 6-48 (88)
266 PHA01548 hypothetical protein 37.1 79 0.0017 24.9 4.6 42 198-254 103-144 (167)
267 PF12681 Glyoxalase_2: Glyoxal 36.9 94 0.002 22.0 5.0 16 199-214 92-107 (108)
268 TIGR01352 tonB_Cterm TonB fami 36.8 49 0.0011 22.2 3.3 37 199-235 12-49 (74)
269 KOG0913 Thiol-disulfide isomer 36.7 7.9 0.00017 33.5 -1.0 42 101-145 33-75 (248)
270 TIGR00014 arsC arsenate reduct 36.1 1.4E+02 0.0031 22.4 6.0 39 118-163 6-48 (114)
271 cd03060 GST_N_Omega_like GST_N 35.3 1E+02 0.0022 20.5 4.7 14 118-131 6-19 (71)
272 PLN02945 nicotinamide-nucleoti 35.1 1.1E+02 0.0025 26.3 5.9 37 110-147 22-58 (236)
273 PF04278 Tic22: Tic22-like fam 35.1 29 0.00063 30.8 2.3 87 82-181 73-161 (274)
274 KOG1672 ATP binding protein [P 34.9 1.3E+02 0.0028 25.4 5.9 75 110-222 86-160 (211)
275 PF13462 Thioredoxin_4: Thiore 34.5 89 0.0019 24.3 4.9 36 182-233 126-161 (162)
276 cd07242 Glo_EDI_BRP_like_6 Thi 34.2 1.9E+02 0.0041 21.2 7.0 60 141-215 67-126 (128)
277 cd08361 PpCmtC_N N-terminal do 33.9 1.5E+02 0.0033 22.0 6.0 61 144-219 61-121 (124)
278 TIGR02743 TraW type-F conjugat 33.5 3E+02 0.0065 23.3 9.0 88 99-214 112-199 (202)
279 PF11211 DUF2997: Protein of u 33.4 1.3E+02 0.0027 19.2 4.4 32 202-235 2-33 (48)
280 KOG4614 Inner membrane protein 33.2 57 0.0012 28.4 3.6 36 199-235 248-283 (287)
281 PF14062 DUF4253: Domain of un 33.0 2E+02 0.0044 21.7 6.3 43 118-163 23-76 (111)
282 COG0525 ValS Valyl-tRNA synthe 32.9 1E+02 0.0022 32.1 5.9 134 118-254 172-348 (877)
283 cd08351 ChaP_like ChaP, an enz 32.5 1.1E+02 0.0025 22.5 5.0 18 199-216 103-120 (123)
284 cd07241 Glo_EDI_BRP_like_3 Thi 32.3 1.9E+02 0.0042 20.8 6.4 56 141-214 69-124 (125)
285 PRK13208 valS valyl-tRNA synth 32.2 27 0.00058 35.9 1.8 24 110-133 166-189 (800)
286 cd07239 BphC5-RK37_C_like C-te 32.2 2.4E+02 0.0051 21.9 7.0 57 142-215 59-115 (144)
287 PRK10200 putative racemase; Pr 32.0 97 0.0021 26.6 5.0 47 127-181 60-106 (230)
288 PF09897 DUF2124: Uncharacteri 31.3 73 0.0016 25.5 3.7 58 111-180 83-140 (147)
289 PLN02640 glucose-6-phosphate 1 30.0 99 0.0022 30.5 5.1 70 80-152 61-131 (573)
290 PF01323 DSBA: DSBA-like thior 29.9 85 0.0018 25.3 4.2 41 112-153 2-42 (193)
291 cd08343 ED_TypeI_classII_C C-t 29.0 2.5E+02 0.0053 21.0 7.8 60 141-217 58-117 (131)
292 PF15632 ATPgrasp_Ter: ATP-gra 28.8 2.8E+02 0.006 25.4 7.6 102 131-235 79-194 (329)
293 COG0552 FtsY Signal recognitio 28.7 4.7E+02 0.01 24.1 11.0 93 110-214 139-236 (340)
294 cd07258 PpCmtC_C C-terminal do 28.1 2.8E+02 0.0062 21.4 7.0 60 140-216 54-113 (141)
295 cd08362 BphC5-RrK37_N_like N-t 27.7 1.5E+02 0.0032 21.5 4.9 60 142-217 58-117 (120)
296 PF08806 Sep15_SelM: Sep15/Sel 27.5 62 0.0013 22.9 2.5 18 198-215 41-58 (78)
297 PF07449 HyaE: Hydrogenase-1 e 27.1 1.8E+02 0.0039 22.0 5.1 28 181-215 71-98 (107)
298 PLN02367 lactoylglutathione ly 26.9 3.5E+02 0.0076 23.4 7.5 53 141-215 168-220 (233)
299 PF10740 DUF2529: Protein of u 26.9 60 0.0013 26.7 2.6 20 130-149 96-115 (172)
300 COG3529 Predicted nucleic-acid 26.8 60 0.0013 21.9 2.1 32 115-151 7-39 (66)
301 COG1419 FlhF Flagellar GTP-bin 26.6 2.7E+02 0.0058 26.3 7.1 74 121-210 212-292 (407)
302 cd08356 Glo_EDI_BRP_like_17 Th 26.5 1.4E+02 0.0031 21.8 4.5 16 199-214 96-111 (113)
303 PF06342 DUF1057: Alpha/beta h 26.4 1.3E+02 0.0029 26.9 4.9 97 111-218 37-146 (297)
304 COG0694 Thioredoxin-like prote 26.0 1.5E+02 0.0033 21.8 4.4 37 95-133 28-65 (93)
305 COG0647 NagD Predicted sugar p 25.9 1.8E+02 0.0039 25.8 5.6 39 127-165 25-63 (269)
306 PF13848 Thioredoxin_6: Thiore 25.9 3.3E+02 0.0072 21.4 8.2 26 182-211 139-164 (184)
307 PRK00865 glutamate racemase; P 25.8 4.4E+02 0.0096 22.9 8.4 69 111-187 32-104 (261)
308 PF05228 CHASE4: CHASE4 domain 25.7 1.6E+02 0.0034 23.0 4.9 15 201-215 52-66 (161)
309 cd03037 GST_N_GRX2 GST_N famil 25.6 2E+02 0.0044 18.9 5.2 13 118-130 6-18 (71)
310 cd07265 2_3_CTD_N N-terminal d 25.5 2.3E+02 0.005 20.6 5.6 58 142-216 61-118 (122)
311 PHA02762 hypothetical protein; 25.5 80 0.0017 20.7 2.5 29 200-230 29-57 (62)
312 KOG1615 Phosphoserine phosphat 25.5 2.8E+02 0.0061 23.6 6.3 49 183-234 120-169 (227)
313 PRK13730 conjugal transfer pil 25.5 4.3E+02 0.0092 22.6 10.1 79 112-208 92-172 (212)
314 PF02966 DIM1: Mitosis protein 25.4 3.4E+02 0.0074 21.4 9.6 41 109-152 21-62 (133)
315 PF13103 TonB_2: TonB C termin 25.0 90 0.0019 21.7 3.0 20 198-217 27-46 (85)
316 cd09013 BphC-JF8_N_like N-term 24.7 2.8E+02 0.0061 20.2 6.2 57 142-217 62-118 (121)
317 TIGR00067 glut_race glutamate 24.7 4.5E+02 0.0098 22.8 8.0 63 112-181 26-93 (251)
318 cd08347 PcpA_C_like C-terminal 24.7 3.3E+02 0.0072 21.4 6.7 57 141-217 64-120 (157)
319 cd07237 BphC1-RGP6_C_like C-te 24.5 3.3E+02 0.0071 21.2 6.6 60 141-217 72-131 (154)
320 PF01323 DSBA: DSBA-like thior 24.5 1.8E+02 0.0039 23.3 5.2 37 182-233 157-193 (193)
321 PF07411 DUF1508: Domain of un 24.0 1.1E+02 0.0024 19.4 3.0 37 199-239 5-41 (49)
322 cd03073 PDI_b'_ERp72_ERp57 PDI 23.7 3.2E+02 0.0069 20.4 8.0 43 184-233 65-108 (111)
323 PF02575 YbaB_DNA_bd: YbaB/Ebf 23.7 2E+02 0.0044 20.5 4.8 31 202-232 33-64 (93)
324 cd08360 MhqB_like_C C-terminal 23.5 3.2E+02 0.007 20.5 6.7 59 141-216 61-119 (134)
325 cd03034 ArsC_ArsC Arsenate Red 23.5 1.3E+02 0.0027 22.6 3.7 39 118-163 6-48 (112)
326 PF08918 PhoQ_Sensor: PhoQ Sen 23.4 39 0.00085 27.6 0.9 26 201-233 76-101 (180)
327 TIGR03590 PseG pseudaminic aci 23.3 3.8E+02 0.0081 23.5 7.3 13 138-150 49-61 (279)
328 PRK11867 2-oxoglutarate ferred 23.2 1E+02 0.0022 27.5 3.7 20 119-138 18-39 (286)
329 PHA00649 hypothetical protein 23.1 52 0.0011 22.8 1.3 23 141-163 21-43 (83)
330 cd01427 HAD_like Haloacid deha 23.0 1.5E+02 0.0033 21.4 4.2 38 126-163 24-61 (139)
331 cd03041 GST_N_2GST_N GST_N fam 22.3 2.6E+02 0.0056 18.9 6.3 17 115-131 4-20 (77)
332 PRK06126 hypothetical protein; 22.2 5.3E+02 0.012 24.8 8.8 32 78-116 446-477 (545)
333 cd08357 Glo_EDI_BRP_like_18 Th 21.8 1.8E+02 0.0039 21.0 4.4 16 200-215 108-123 (125)
334 smart00775 LNS2 LNS2 domain. T 21.8 1.8E+02 0.0039 23.2 4.6 49 158-213 105-156 (157)
335 PF02743 Cache_1: Cache domain 21.6 60 0.0013 22.4 1.5 16 199-214 53-68 (81)
336 PRK05729 valS valyl-tRNA synth 21.6 54 0.0012 34.1 1.8 27 111-137 168-194 (874)
337 TIGR02000 NifU_proper Fe-S clu 21.4 1.9E+02 0.0042 25.9 5.0 43 95-140 237-279 (290)
338 PF00585 Thr_dehydrat_C: C-ter 21.3 2.5E+02 0.0054 20.3 4.8 41 141-187 49-89 (91)
339 cd09014 BphC-JF8_C_like C-term 21.2 4.2E+02 0.0092 21.0 6.7 59 142-217 69-127 (166)
340 KOG1576 Predicted oxidoreducta 20.9 87 0.0019 28.0 2.6 32 225-258 209-253 (342)
341 cd09286 NMNAT_Eukarya Nicotina 20.9 1.9E+02 0.0042 24.7 4.8 35 111-146 1-36 (225)
342 cd07245 Glo_EDI_BRP_like_9 Thi 20.7 3E+02 0.0065 19.0 5.9 14 200-213 100-113 (114)
343 KOG3035 Isoamyl acetate-hydrol 20.7 2.6E+02 0.0056 24.2 5.3 45 110-154 70-127 (245)
344 cd08353 Glo_EDI_BRP_like_7 Thi 20.6 3.7E+02 0.0081 20.1 6.2 53 141-214 86-138 (142)
345 cd03067 PDI_b_PDIR_N PDIb fami 20.6 3.8E+02 0.0083 20.2 6.3 78 108-189 19-96 (112)
346 PF13419 HAD_2: Haloacid dehal 20.5 3.9E+02 0.0085 20.3 6.9 35 129-163 80-114 (176)
347 PF08448 PAS_4: PAS fold; Int 20.4 98 0.0021 21.6 2.5 14 202-215 8-21 (110)
348 cd08342 HPPD_N_like N-terminal 20.3 3.8E+02 0.0083 20.1 6.3 54 141-215 68-121 (136)
349 cd09012 Glo_EDI_BRP_like_24 Th 20.3 3.5E+02 0.0077 19.7 6.6 54 143-215 69-122 (124)
No 1
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-42 Score=282.22 Aligned_cols=190 Identities=59% Similarity=1.077 Sum_probs=180.9
Q ss_pred CCCCCCCCCeEEeee-cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAV-FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~-~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|+.+++ .+....+++|+++.|| ++||+|||+.+.++|+.|+..++++|++|+++|++||+||+|+.+.+
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gk-w~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGK-WVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCc-EEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 679999999999988 3433469999999995 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+|.+...+.+++.+++||++.|.+.++++.||+..++.|...+.+||||++|+|++..+++.+++++++|+|+.+++||
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999989888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
+.++| ++.||++|++|+++|+|++.+ .+|+.+
T Consensus 162 ~~~~h-g~vcPanW~~G~~~i~p~~~~-~~~~~~ 193 (194)
T COG0450 162 FVAKH-GEVCPANWKPGDKTIKPSPDL-GEYLKE 193 (194)
T ss_pred HHHHh-CCCccCCCCCCCccccCCccc-hhhhhc
Confidence 99999 999999999999999999999 999875
No 2
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=100.00 E-value=4.3e-40 Score=286.84 Aligned_cols=189 Identities=46% Similarity=0.917 Sum_probs=172.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++.++.+.+++.++|+++ +|+ ++||+||+++|||+|..|++.|++++++|+++|++||+||.|+++.+
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk-~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h 146 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDS-YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSH 146 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCC-eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 6799999999998644556678999998 776 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
++|.+...+.++..+++||+++|.+.+++++||+.. ..|+..|++||||++|+|++.++++...+++++|+++.|+++|
T Consensus 147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~-~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLR-DEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCC-cCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 999986555545557899999999999999999975 3466799999999999999999999999999999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHHHhh
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 269 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 269 (271)
+.+++ ++.||++|+||++++.|++..+++||.
T Consensus 226 ~~~~~-g~~cPanW~~g~~~~~~~~~~~~~~~~ 257 (261)
T PTZ00137 226 FAEKT-GNVCPVNWKQGDQAMKPDSQSVKQYLS 257 (261)
T ss_pred hhhhc-CCCcCCCCCcCCceecCCcccHHHHHh
Confidence 99988 999999999999999999999999996
No 3
>PRK15000 peroxidase; Provisional
Probab=100.00 E-value=1.3e-39 Score=275.54 Aligned_cols=190 Identities=45% Similarity=0.882 Sum_probs=171.1
Q ss_pred CCCCCCCCCeEEeeecCCCce---eEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFI---NVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~---~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
..+|+++|+|+++++.+ +|+ .++|+++ +|| ++||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.
T Consensus 2 ~~vg~~aPdF~~~~~~~-~g~~~~~~~l~~~~~gk-~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLG-SGEIVDKFNFKQHTNGK-TTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred CcCCCcCCCCEeecccC-CCceeeeeeHHHHhCCC-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 35899999999986532 344 4566666 677 99999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.+++|.+...+..++.+++||+++|.+.++++.||+.....|+..|.+||||++|+|++.+.++...+++++|+++.|+
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 99999998766655555679999999999999999998777788899999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 234 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
++|+.+++ ++.||++|.||+++|++++.+.++||+.
T Consensus 160 al~~~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~~~~ 195 (200)
T PRK15000 160 ALQFHEEH-GDVCPAQWEKGKEGMNASPDGVAKYLAE 195 (200)
T ss_pred HhhhHHhc-CCCcCCCCCCCCceeccCHHHHHHHHHH
Confidence 99999999 8999999999999999999999999963
No 4
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-40 Score=262.56 Aligned_cols=191 Identities=66% Similarity=1.129 Sum_probs=184.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+..++|+|.-..+.+...+.++|++|+|| ++|++||+..|.-+|+.++-.+++.+++|++.|.+||++|+|+.+.+.
T Consensus 4 ~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gk-yvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshl 82 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTAVVDGEFKEIKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHL 82 (196)
T ss_pred cccCCCCCCcceeEEEcCcceEEeehhhccc-EEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhh
Confidence 4466778999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|...-++.+|+..+++|+++|.+.++++.||+...+.|+..+..||||++|.++++.+.+..++++++|+++.+++.|+
T Consensus 83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~ 162 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQF 162 (196)
T ss_pred hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
..+| +++||++|+||.++++||.+.|||||..
T Consensus 163 td~~-geVcPagW~pgs~tikp~~~~skeyf~k 194 (196)
T KOG0852|consen 163 TDEH-GEVCPAGWKPGSDTIKPDVKDSKEYFSK 194 (196)
T ss_pred hhcc-CccccCCCCCCCcccCCCcchhHHHHhh
Confidence 9999 8999999999999999999999999975
No 5
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=1.2e-39 Score=272.65 Aligned_cols=186 Identities=37% Similarity=0.750 Sum_probs=170.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
..+|+++|+|+...+.+.+...++|++|+|| ++||+|||++|||+|..|++.|++++++|+++|++||+||.|+.+.++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk-~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~ 80 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK 80 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCC-eEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 4689999999999887888899999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+.... +.+++||+++|.+.++++.||+..+..|+..|.+||||++|+|++.++.+...+++++++++.|+++|+
T Consensus 81 a~~~~~~~---~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~ 157 (187)
T PRK10382 81 AWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 157 (187)
T ss_pred HHHHhhcc---ccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence 99987532 136899999999999999999976666777899999999999999999888899999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHH
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEY 267 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 267 (271)
.++++++.||++|++|+.+|.+++.+...|
T Consensus 158 ~~~~~g~~~p~~w~~~~~~~~~~~~~~~~~ 187 (187)
T PRK10382 158 VASHPGEVCPAKWKEGEATLAPSLDLVGKI 187 (187)
T ss_pred HhhcCCeEeCCCCCcCCcceecCHHHhccC
Confidence 999988999999999999999998776543
No 6
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=100.00 E-value=1.5e-38 Score=269.40 Aligned_cols=191 Identities=52% Similarity=0.962 Sum_probs=173.2
Q ss_pred CCCCCCCCCeEEeee-cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAV-FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~-~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++.++ .+.+|+.++|++++|| ++||+||+++||+.|+.+++.|.+++++|+++|++||+||+|+.+.+
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk-~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGK-WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCC-EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 568999999998864 3567889999999998 89999999999999999999999999999999999999999999989
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+|.......++..+++||+++|.++++++.||+.....|+..|.+||||++|+|++.++++...+++++++++.|+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 89976554444444689999999999999999998666677789999999999999999998889999999999999999
Q ss_pred HhhhCCCcccCCCCCCCCCCCCCCchhhHHHhhh
Q 024201 237 YVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 270 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
...++ +++||++|++|+++|.+.+..+++||++
T Consensus 165 ~~~~~-~~~cp~~w~~g~~~~~~~~~~~~~~~~~ 197 (199)
T PTZ00253 165 FVEKH-GEVCPANWKKGDPTMKPDPNKSKEGFFS 197 (199)
T ss_pred hHHhc-CCEeCCCCCcCCccccCChHHHHHHhhc
Confidence 98886 8999999999999999999999999975
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=100.00 E-value=4.7e-38 Score=266.71 Aligned_cols=185 Identities=37% Similarity=0.708 Sum_probs=167.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+.+|+|++.+ .+| .++|++++|| ++||+||+++|||+|..+++.|++++++|+++|++||+||+|+.+.+.
T Consensus 2 ~~vG~~aP~F~~~~---~~g-~v~l~d~~gk-~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~ 76 (202)
T PRK13190 2 VKLGQKAPDFTVNT---TKG-PIDLSKYKGK-WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHI 76 (202)
T ss_pred CCCCCCCCCcEEec---CCC-cEeHHHhCCC-EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 67899999999984 444 6999999998 888877779999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
+|.+...+..+. .++||+++|.++++++.||+.....|...|++||||++|+|++...++...+++++|+++.|+++|.
T Consensus 77 ~w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 77 AWLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred HHHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 999887654433 3689999999999999999976666767899999999999999998888899999999999999999
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHHhh
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 269 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 269 (271)
..++ ++.||++|+||+++|.+.+.+.+++..
T Consensus 156 ~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~~~ 186 (202)
T PRK13190 156 NWKR-KVATPANWQPGQEGIVPAPSTLDEAEM 186 (202)
T ss_pred HHhc-CCCcCCCCCcCCceecCCCCCHHHHHH
Confidence 9999 899999999999999999998888764
No 8
>PRK13191 putative peroxiredoxin; Provisional
Probab=100.00 E-value=1.3e-37 Score=265.91 Aligned_cols=185 Identities=37% Similarity=0.689 Sum_probs=164.2
Q ss_pred CCCCCCCCCeEEeeecCCCceeEec-ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKL-SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~L-sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+++|+|++. +.+|+ +.+ ++++|| ++||+||+++|||+|..+++.|++++++|+++|++||+||+|+.+.+
T Consensus 7 ~~iG~~aPdF~l~---~~~G~-~~l~~~~~GK-~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h 81 (215)
T PRK13191 7 PLIGEKFPEMEVI---TTHGK-IKLPDDYKGR-WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH 81 (215)
T ss_pred ccCCCcCCCCEee---cCCCC-EEcHHHhCCC-cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 6799999999998 44565 555 558998 89988888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC-CccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ-GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~-g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++|.+...+..+. +++||+++|.+.++++.||+..... +...|.+||||++|+|++.++++...+++++|+|+.|+++
T Consensus 82 ~aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 82 IEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9998866554333 6789999999999999999975432 4568999999999999999999999999999999999999
Q ss_pred HHhhhCCCcccCCCCCC----CCCCCCCCchhhHHHhh
Q 024201 236 QYVQENPDEVCPAGWKP----GDKSMKPDPKLSKEYFA 269 (271)
Q Consensus 236 ~~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~ 269 (271)
|...++ ++.||++|++ |+++|.|.+.+.+++..
T Consensus 161 q~~~~~-~~~~P~~w~~~~~~g~~~~~~~~~~~~~~~~ 197 (215)
T PRK13191 161 QLVDKA-GVVTPANWPNNELIGDKVINPAPRTIKDAKM 197 (215)
T ss_pred hhhhhc-CCCcCCCCCCCCCCCCceecCCCCCHHHHHH
Confidence 999999 8999999997 99999999999888753
No 9
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=100.00 E-value=1e-36 Score=255.67 Aligned_cols=182 Identities=45% Similarity=0.843 Sum_probs=162.0
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
.+|+++|+|++.++.+.+...+++++++|| ++||+|||++|||+|+.+++.|++++++|+++|++||+||.|+.+.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk-~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGK-WSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCC-EEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 479999999998543333347899999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHh
Q 024201 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 238 (271)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~ 238 (271)
|.+..... .+++|++++|.+.++++.||+.....|+..|++||||++|+|++.++.....+++++++++.|+++|++
T Consensus 82 ~~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~ 158 (187)
T TIGR03137 82 WHDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYV 158 (187)
T ss_pred HHhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhH
Confidence 98765322 257899999999999999999866667778999999999999999988777788999999999999999
Q ss_pred hhCCCcccCCCCCCCCCCCCCCchhh
Q 024201 239 QENPDEVCPAGWKPGDKSMKPDPKLS 264 (271)
Q Consensus 239 ~~~~~~~~p~~~~~~~~~~~~~~~~~ 264 (271)
.+++++.||++|.+|++.|.++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (187)
T TIGR03137 159 AAHPGEVCPAKWKEGAETLKPSLDLV 184 (187)
T ss_pred HhcCCeeeCCCCCcCCccccCChHhh
Confidence 99988999999999999999986654
No 10
>PRK13189 peroxiredoxin; Provisional
Probab=100.00 E-value=2.8e-36 Score=259.12 Aligned_cols=185 Identities=39% Similarity=0.708 Sum_probs=164.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|+.+|+|++.++ +| .++++++ +|| ++||+||+++|||+|..+++.|++++++|+++|++||+||+|+.+.+
T Consensus 9 ~~vG~~aPdF~~~~~---~g-~~~l~d~~~Gk-~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h 83 (222)
T PRK13189 9 PLIGDKFPEFEVKTT---HG-PIKLPDDYKGK-WFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSH 83 (222)
T ss_pred ccCCCcCCCcEeEcC---CC-CEeeHHHhCCC-eEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 679999999999854 44 4788774 887 89988888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC-CccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ-GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~-g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+|.+...+..+. +++||+++|.++++++.||+..... +...|++||||++|+|++.++++...+++++++++.|+++
T Consensus 84 ~aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 84 IKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999987654433 5789999999999999999975432 3468999999999999999999989999999999999999
Q ss_pred HHhhhCCCcccCCCCCCCC----CCCCCCchhhHHHhh
Q 024201 236 QYVQENPDEVCPAGWKPGD----KSMKPDPKLSKEYFA 269 (271)
Q Consensus 236 ~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~ 269 (271)
|...++ ++.||++|+||+ ++|.+.+.+.+++..
T Consensus 163 q~~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~ 199 (222)
T PRK13189 163 QTSDEK-GVATPANWPPNDLIKDKVIVPPASSVEEAKK 199 (222)
T ss_pred hhHhhc-CcCcCCCCCCCCCCCCceeeCCCCCHHHHHH
Confidence 999999 899999999999 999999998888753
No 11
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=100.00 E-value=4e-36 Score=255.18 Aligned_cols=182 Identities=37% Similarity=0.672 Sum_probs=161.6
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~ 159 (271)
+|+.+|+|++.+ .+| .++|++++|++++||+|++++|||.|..+++.|++++++|+++|++||+||+|+.+.+.+|
T Consensus 1 vG~~aP~F~~~~---~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADT---THG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEec---CCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 589999999984 344 5899999995588888888999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC--CccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHH
Q 024201 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ--GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~--g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~ 237 (271)
.+...+..+ .+++||+++|.++++++.||+..... +...|.+||||++|+|++.++++...+++.+++++.|+++|.
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 998766544 47899999999999999999975432 335689999999999999999988899999999999999998
Q ss_pred hhhCCCcccCCCCCCCCCCCCCCchhhHHH
Q 024201 238 VQENPDEVCPAGWKPGDKSMKPDPKLSKEY 267 (271)
Q Consensus 238 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 267 (271)
..++ ++.||++|+||+++|.+.+...++-
T Consensus 156 ~~~~-~~~~p~~w~~g~~~~~~~~~~~~~~ 184 (203)
T cd03016 156 TDKH-KVATPANWKPGDDVIVPPSVSDEEA 184 (203)
T ss_pred Hhhc-CcCcCCCCCCCCceecCCCCCHHHH
Confidence 8887 8999999999999999988877763
No 12
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=100.00 E-value=3.6e-35 Score=243.36 Aligned_cols=172 Identities=68% Similarity=1.172 Sum_probs=154.6
Q ss_pred CCCCCCCeEEeeecC-CCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 80 VGNTAPDFAAEAVFD-QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~-~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
+|+++|+|+++++.+ .+|+.++|++++|| ++||+||+++|||.|..+++.|++++++|.++|+.+|+||.|+.+...+
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk-~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGK-WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCC-EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 599999999997765 55689999999997 9999999999999999999999999999999999999999999888888
Q ss_pred HHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHh
Q 024201 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYV 238 (271)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~ 238 (271)
|.+...+..+..+++|+++.|.++++++.||+.....|+..|++||||++|+|++.+++....+++.+++++.|+.++..
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~ 159 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFV 159 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhh
Confidence 98876543333468999999999999999999877667778999999999999999988777788899999999999988
Q ss_pred hhCCCcccCCCCCCC
Q 024201 239 QENPDEVCPAGWKPG 253 (271)
Q Consensus 239 ~~~~~~~~p~~~~~~ 253 (271)
.+| ++.||++|++|
T Consensus 160 ~~~-~~~~~~~~~~~ 173 (173)
T cd03015 160 EEH-GEVCPANWKPG 173 (173)
T ss_pred hhc-CCCcCCCCCCC
Confidence 888 89999999986
No 13
>PRK13599 putative peroxiredoxin; Provisional
Probab=100.00 E-value=1.1e-34 Score=247.77 Aligned_cols=183 Identities=33% Similarity=0.605 Sum_probs=160.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++. +.+|+.+.+++++|| ++||+||+++|||+|..+++.|++++++|+++|++||+||+|+.+.+.
T Consensus 2 ~~~Gd~aPdF~l~---t~~G~~~~~~~~~Gk-~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~ 77 (215)
T PRK13599 2 KLLGEKFPSMEVV---TTQGVKRLPEDYAGK-WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHI 77 (215)
T ss_pred CCCCCCCCCCEeE---CCCCcEecHHHHCCC-eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 3689999999998 556778888999998 888888889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCc-cceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~-~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+|.+...+..+ .+++||+++|.++++++.||+..+..|. ..|++||||++|+|++.++++...+++++++++.|++||
T Consensus 78 ~w~~~i~~~~~-~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 78 KWVEWIKDNTN-IAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred HHHHhHHHhcC-CCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 99886644322 2678999999999999999997554343 579999999999999999888889999999999999999
Q ss_pred HhhhCCCcccCCCCCC----CCCCCCCCchhhHH
Q 024201 237 YVQENPDEVCPAGWKP----GDKSMKPDPKLSKE 266 (271)
Q Consensus 237 ~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~ 266 (271)
...++ ++.||++|+| ||+++.+-+...++
T Consensus 157 ~~~~~-~~~~p~~w~~~~~~g~~~~~~~~~~~~~ 189 (215)
T PRK13599 157 TADQY-GVALPEKWPNNYLIKDHVIVPPSTDEAS 189 (215)
T ss_pred hhhhc-CCCcCCCCCCCCCCCCcEEEcCCCCHHH
Confidence 88888 8999999999 99999877665554
No 14
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.9e-31 Score=211.83 Aligned_cols=147 Identities=39% Similarity=0.587 Sum_probs=136.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|||+|+ +.+|+.++|++++|+ +|||+|||..++|.|..|...|++.+++|++.|++||+||.|++..++
T Consensus 4 l~~G~~aPdF~Lp---~~~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~ 79 (157)
T COG1225 4 LKVGDKAPDFELP---DQDGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHK 79 (157)
T ss_pred CCCCCcCCCeEee---cCCCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 7899999999999 888889999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC------ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g------~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
+|.+++ +++|++++|.+.+++++||+...... ...|.+||||++|+|++.+ .......+++++++.
T Consensus 80 ~F~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~ 151 (157)
T COG1225 80 KFAEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAA 151 (157)
T ss_pred HHHHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHH
Confidence 999999 89999999999999999999865431 3579999999999999998 777788899999999
Q ss_pred HHHHH
Q 024201 232 LQALQ 236 (271)
Q Consensus 232 l~~l~ 236 (271)
|+.+.
T Consensus 152 l~~l~ 156 (157)
T COG1225 152 LKKLA 156 (157)
T ss_pred HHHhc
Confidence 98764
No 15
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.96 E-value=1.1e-27 Score=192.92 Aligned_cols=146 Identities=38% Similarity=0.680 Sum_probs=129.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+++|+|++. +.+|+.+++++++|++++||+||+++|||.|+.+++.|++++++++++|+++|+|+.|+.+.++
T Consensus 1 ~~~G~~~p~~~l~---~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~ 77 (149)
T cd03018 1 LEVGDKAPDFELP---DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR 77 (149)
T ss_pred CCCCCcCCCcEec---CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence 4689999999998 5678899999999933899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCC--hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADIT--KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~--~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+|.+++ +++|++++|.+ .++++.||+.....|+..|++||||++|+|++.+.+......+..++.+.|+
T Consensus 78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 78 AWAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred HHHHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 999987 78999999988 9999999998554456678999999999999999888766677777777664
No 16
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-27 Score=190.82 Aligned_cols=183 Identities=34% Similarity=0.640 Sum_probs=164.3
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+..|+.+|+|+..+..+ .+++.|+.|..|.||+-.++.+.|+|..++-++.++..||.++||..|+.|+|+.+.++
T Consensus 6 l~lgd~~PNfea~Tt~g----~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 6 LRLGDTVPNFEADTTVG----KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred ccccCcCCCcccccccc----ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 66899999999964433 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCC--CcccceEEcCChHHHHHhCCccCC------CCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q 024201 158 AWVQTDRKSGGLG--DLKYPLIADITKSISKSYGVLIPD------QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETL 229 (271)
Q Consensus 158 ~~~~~~~~~~~~~--~~~f~~l~D~~~~~~~~ygv~~~~------~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l 229 (271)
.|.+.++...... .++||++.|.+.+++-.||+...+ .|...+..||||++-+|+-..+++..++++.+|+|
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiL 161 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEIL 161 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHH
Confidence 9999997665443 489999999999999999988433 34567999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcccCCCCCCCCCCCCCCchhhHH
Q 024201 230 RTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKE 266 (271)
Q Consensus 230 ~~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 266 (271)
+.|+.||..+++ ++..|++|+||++.|. -|.+++|
T Consensus 162 RvidsLqlt~~k-~VaTP~nWkpg~~vmi-lPtV~~e 196 (224)
T KOG0854|consen 162 RVIDSLQLTDKK-GVATPVNWKPGDKVMI-LPTVSDE 196 (224)
T ss_pred HHHHHHhhhccc-ccccccccCCCCceEE-cCcCChH
Confidence 999999999887 7999999999999998 5555554
No 17
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.95 E-value=1e-26 Score=191.62 Aligned_cols=147 Identities=29% Similarity=0.521 Sum_probs=125.5
Q ss_pred ccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 73 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 73 ~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.+.+ +.+|+++|+|++. +.+|+.++|++++|| ++||+||+..|||+|..+++.|+++++++. |++||+||.|+
T Consensus 14 ~~~~-~~~G~~~P~f~l~---~~~g~~v~l~~~~Gk-~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~ 86 (167)
T PRK00522 14 AGSL-PQVGDKAPDFTLV---ANDLSDVSLADFAGK-RKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADL 86 (167)
T ss_pred eCCC-CCCCCCCCCeEEE---cCCCcEEehHHhCCC-EEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 3444 7799999999998 678889999999998 899999954449999999999999999983 89999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCcc-cceEEcC-ChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEec-cCCCCCCHH
Q 024201 153 VFSHLAWVQTDRKSGGLGDLK-YPLIADI-TKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTIN-NLAIGRSVD 226 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~-f~~l~D~-~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~-~~~~~~~~~ 226 (271)
++.+++|.+++ ++. +++++|. ++++++.||+.... .|+..|++||||++|+|++.++. +.....+++
T Consensus 87 ~~~~~~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~ 159 (167)
T PRK00522 87 PFAQKRFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYD 159 (167)
T ss_pred HHHHHHHHHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence 99999999987 555 7899995 56999999997543 56777899999999999999875 445666889
Q ss_pred HHHHHHH
Q 024201 227 ETLRTLQ 233 (271)
Q Consensus 227 e~l~~l~ 233 (271)
++++.|+
T Consensus 160 ~~l~~l~ 166 (167)
T PRK00522 160 AALAALK 166 (167)
T ss_pred HHHHHhh
Confidence 9988875
No 18
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.95 E-value=2.1e-26 Score=198.49 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=133.9
Q ss_pred CCcccCCCCCCCcceecccccccCCCccccCCCCCCcc----c-cccccccceeeecccCcCCCCCCCCCCeEEeeecCC
Q 024201 21 PKAFSSSSISPSQNLTIPRSFSGLRNPLKSQVPRPVSL----S-RGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQ 95 (271)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~G~~~Pdf~l~~~~~~ 95 (271)
.+.+...++++++++.+|..-.++..+....+....+. . +.....|++.+... ...|+.+|+|+++ +.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~aPdF~l~---d~ 87 (236)
T PLN02399 15 KTVFNSSPPPPSMAFLVPSLKSSTGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYAR----AATEKSVHDFTVK---DI 87 (236)
T ss_pred ccccccCCCCCccccccceeeeccccccchhhccccccccCCCccccccccccccccc----hhcCCCCCceEEE---CC
Confidence 33444444555567777766655544433322222211 1 11112334443333 2369999999998 67
Q ss_pred CceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------CHHHHHHHH-HHhhhc
Q 024201 96 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SVFSHLAWV-QTDRKS 166 (271)
Q Consensus 96 ~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~~~~~~~~~-~~~~~~ 166 (271)
+|+.++|++++|| ++||+|| ++|||+|..++|.|++++++|+++|++||+|+.| +.+++++|+ +++
T Consensus 88 ~G~~vsLsd~kGK-~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~--- 162 (236)
T PLN02399 88 DGKDVALSKFKGK-VLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRF--- 162 (236)
T ss_pred CCCEEeHHHhCCC-eEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhc---
Confidence 7889999999997 9999999 9999999999999999999999999999999974 445677776 455
Q ss_pred CCCCCcccceEEc--CCh-HHHHHhCCccCC-C---C---ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 167 GGLGDLKYPLIAD--ITK-SISKSYGVLIPD-Q---G---IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 167 ~~~~~~~f~~l~D--~~~-~~~~~ygv~~~~-~---g---~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+++||++.| .++ .+.+.|++.... . | .+.|++||||++|+|++++.+.. +.+++.+.|+.+.
T Consensus 163 ----g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~----~~~~le~~I~~lL 234 (236)
T PLN02399 163 ----KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT----SPFQIEKDIQKLL 234 (236)
T ss_pred ----CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHh
Confidence 788999854 334 455566532110 0 1 14699999999999999986542 4566666676653
No 19
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.95 E-value=1.2e-26 Score=180.91 Aligned_cols=124 Identities=30% Similarity=0.603 Sum_probs=115.2
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~ 159 (271)
+|+++|+|+++ +.+|+.++|++++|| ++||+||+.+|||.|..+++.|++++++|+++|+++|+|+.|+.+.+++|
T Consensus 1 vG~~~P~f~l~---~~~g~~~~l~~l~gk-~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLT---DSDGKTVSLSDLKGK-PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQF 76 (124)
T ss_dssp TTSBGGCEEEE---TTTSEEEEGGGGTTS-EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHH
T ss_pred CcCCCCCcEeE---CCCCCEEEHHHHCCC-cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhh
Confidence 69999999998 777889999999997 99999996669999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.+.+ +++|+++.|.+.++.+.||+.........|.+||||++|+|+++
T Consensus 77 ~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 77 LEEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 9998 78999999999999999999866555578999999999999984
No 20
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.95 E-value=2.4e-26 Score=184.27 Aligned_cols=139 Identities=29% Similarity=0.505 Sum_probs=120.6
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
++|+++|+|++. +.+|+.++|++++|| ++||+||++.|||+|+.+++.|++++++++ |+.||+||.|+.+.+++
T Consensus 1 ~~G~~aP~f~l~---~~~g~~~~l~~~~gk-~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~ 74 (143)
T cd03014 1 KVGDKAPDFTLV---TSDLSEVSLADFAGK-VKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKR 74 (143)
T ss_pred CCCCCCCCcEEE---CCCCcEEeHHHhCCC-eEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHH
Confidence 369999999998 677789999999998 899999965668999999999999999984 89999999999988999
Q ss_pred HHHHhhhcCCCCC-cccceEEcCC-hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC-CCCCCHHHHHH
Q 024201 159 WVQTDRKSGGLGD-LKYPLIADIT-KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL-AIGRSVDETLR 230 (271)
Q Consensus 159 ~~~~~~~~~~~~~-~~f~~l~D~~-~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~-~~~~~~~e~l~ 230 (271)
|.+.+ + .+|++++|.. ..++++||+..+..|+..|++||||++|+|++.+++.. ....+++++++
T Consensus 75 ~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 75 WCGAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred HHHhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 99987 4 3789999996 99999999987666777899999999999999998643 44456776664
No 21
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.95 E-value=2.5e-26 Score=186.58 Aligned_cols=144 Identities=28% Similarity=0.457 Sum_probs=124.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+.+|+|++. +.+|+.++|++++|| ++||+||+..|||.|+.+++.|.+++++++++|+++|+|+.|+.+.++
T Consensus 4 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 4 LKAGDIAPKFSLP---DQDGEQVSLTDFQGQ-RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred CCCCCcCCCcEee---CCCCCEEeHHHhCCC-CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 6789999999998 667789999999998 899999977789999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC--Cc----cceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ--GI----ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~--g~----~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
+|.+++ +++|+++.|.++.+++.||+..... |. ..|++||||++|+|++.+.+. ...+..+++++.
T Consensus 80 ~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~-~~~~~~~~~~~~ 151 (154)
T PRK09437 80 RFAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF-KTSNHHDVVLDY 151 (154)
T ss_pred HHHHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCC-CcchhHHHHHHH
Confidence 999987 7899999999999999999874321 10 137889999999999997553 444567777777
Q ss_pred HH
Q 024201 232 LQ 233 (271)
Q Consensus 232 l~ 233 (271)
++
T Consensus 152 ~~ 153 (154)
T PRK09437 152 LK 153 (154)
T ss_pred Hh
Confidence 65
No 22
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.94 E-value=3.4e-26 Score=183.87 Aligned_cols=132 Identities=25% Similarity=0.489 Sum_probs=114.3
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCC-CCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLD-FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t-~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
++|+++|+|+++++ +.+|+.++|++++|| ++||+|| ++ |||+|+.++|.|.+++++++++|+++|+|+.++.....
T Consensus 1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk-~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~ 77 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGK-PVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVR 77 (146)
T ss_dssp STTSB--CCEEEEE-ETTSEEEEGGGGTTS-EEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHH
T ss_pred CCCCCCCCeEEEee-cCCCCEecHHHhCCC-eEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHH
Confidence 58999999999732 478999999999999 8999999 56 99999999999999999999999999999998777788
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEeccCC
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINNLA 220 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~~~ 220 (271)
+|++++ +.+|+++.|.+.+++++||+.... .|+.+|++||||+||+|++.+.+...
T Consensus 78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 78 EFLKKY-------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHT-------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHhh-------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 888886 789999999999999999976322 23468999999999999999887655
No 23
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.94 E-value=4.1e-26 Score=181.80 Aligned_cols=137 Identities=37% Similarity=0.525 Sum_probs=119.9
Q ss_pred CCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
+++|+|++. +.+|+.+++++++|| ++||+||+++|||.|..+++.|++++++++++|+++|+|+.|+.+...+|.+
T Consensus 1 ~~~p~f~l~---~~~g~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 76 (140)
T cd03017 1 DKAPDFTLP---DQDGETVSLSDLRGK-PVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAE 76 (140)
T ss_pred CCCCCcccc---CCCCCEEeHHHhCCC-cEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 478999998 667889999999998 8999999889999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCcccceEEcCChHHHHHhCCccCC---CCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 162 TDRKSGGLGDLKYPLIADITKSISKSYGVLIPD---QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~---~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
++ +++|+++.|.+..+++.||+.... .+...|++||||++|+|++.+.+.. .+++++++++
T Consensus 77 ~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~~~ 140 (140)
T cd03017 77 KY-------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEVLE 140 (140)
T ss_pred Hh-------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHHHhC
Confidence 87 789999999999999999998431 1223499999999999999986554 6777777763
No 24
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.94 E-value=9.3e-26 Score=183.72 Aligned_cols=134 Identities=23% Similarity=0.350 Sum_probs=118.3
Q ss_pred CCCCCCCeEEeeecCCCceeEeccc-ccCCcEEEEEEecCCCCCChHHH-HHHHHHHHHHHHhcCc-EEEEEeCCCHHHH
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSD-YIGKKYVILFFYPLDFTFVCPTE-ITAFSDRYTEFEKLNT-EILGVSTDSVFSH 156 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~~~-l~~L~~~~~~~~~~gv-~vv~VS~d~~~~~ 156 (271)
+|+++|+|++.+..+.+|+.++|++ ++|+ ++||+|||+.|||.|..+ ++.|++.+++|++.|+ .|++||.|+++.+
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk-~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~ 79 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGK-KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVM 79 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCC-cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHH
Confidence 5999999999965444688999999 5887 899999999999999999 9999999999999999 6999999999999
Q ss_pred HHHHHHhhhcCCCCCc--ccceEEcCChHHHHHhCCccCCC--Cc---cceEEEEEcCCCcEEEEEeccCCCC
Q 024201 157 LAWVQTDRKSGGLGDL--KYPLIADITKSISKSYGVLIPDQ--GI---ALRGLFIIDKEGVIQHSTINNLAIG 222 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~--~f~~l~D~~~~~~~~ygv~~~~~--g~---~~P~~~lID~~G~V~~~~~~~~~~~ 222 (271)
++|.+++ ++ +|++++|.+.+++++||+..... |. ..|.+|||| +|+|++.++.....+
T Consensus 80 ~~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~ 144 (155)
T cd03013 80 KAWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPGD 144 (155)
T ss_pred HHHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCCC
Confidence 9999998 54 89999999999999999986543 32 579999999 799999988765543
No 25
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.93 E-value=9.4e-25 Score=180.42 Aligned_cols=152 Identities=18% Similarity=0.311 Sum_probs=126.7
Q ss_pred CCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-------
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS------- 152 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~------- 152 (271)
|+.+|+|++. +.+|+.++|+++ +|+ ++||+|| ++|||.|..+++.|.+++++|+++++++|+|+.|+
T Consensus 1 g~~~p~f~l~---~~~g~~v~l~~~~~~k-~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d 75 (171)
T cd02969 1 GSPAPDFSLP---DTDGKTYSLADFADGK-ALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPED 75 (171)
T ss_pred CCcCCCcccc---CCCCCEEeHHHHhCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccc
Confidence 7889999998 667779999998 666 9999999 89999999999999999999998899999999975
Q ss_pred -HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC-----CCCCHH
Q 024201 153 -VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA-----IGRSVD 226 (271)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~-----~~~~~~ 226 (271)
.+..++|.+.+ +++|+++.|.+..+++.||+. ..|.+||||++|+|++....+.. .....+
T Consensus 76 ~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~ 142 (171)
T cd02969 76 SPENMKAKAKEH-------GYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGR 142 (171)
T ss_pred CHHHHHHHHHHC-------CCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHH
Confidence 45666777765 678999999999999999998 78999999999999988543221 123567
Q ss_pred HHHHHHHHHHHh-----hhCCCcccCCCC
Q 024201 227 ETLRTLQALQYV-----QENPDEVCPAGW 250 (271)
Q Consensus 227 e~l~~l~~l~~~-----~~~~~~~~p~~~ 250 (271)
++.++|+++..- .+-++.+|+.+|
T Consensus 143 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 143 DLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred HHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 788888877533 255688999998
No 26
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.92 E-value=3.4e-24 Score=170.62 Aligned_cols=134 Identities=48% Similarity=0.821 Sum_probs=116.0
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~ 162 (271)
.+|+|++. +.+|+.+++++++|+ ++||+||+++||+.|..+++.|++++++|+++|+.+|+|+.|+.+..++|.++
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk-~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~ 76 (140)
T cd02971 1 KAPDFTLP---ATDGGEVSLSDFKGK-WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEK 76 (140)
T ss_pred CCCCceec---cCCCcEEehHHhCCC-eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 47999998 667789999999988 89999999999999999999999999999888999999999999888999887
Q ss_pred hhhcCCCCCcccceEEcCChHHHHHhCCccCCC---CccceEEEEEcCCCcEEEEEeccCCCCCCHH
Q 024201 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ---GIALRGLFIIDKEGVIQHSTINNLAIGRSVD 226 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~---g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~ 226 (271)
+ ...+|+++.|.++.+++.||+..... +...|++||||++|+|++.+.+........+
T Consensus 77 ~------~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~ 137 (140)
T cd02971 77 E------GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAE 137 (140)
T ss_pred c------cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChH
Confidence 6 15689999999999999999985432 3456899999999999999987766444333
No 27
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.91 E-value=5.4e-24 Score=170.94 Aligned_cols=125 Identities=27% Similarity=0.426 Sum_probs=108.7
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~ 162 (271)
.+|+|++. +.+|+.++++++.+++++||+||+++|||+|+.+++.|++++++++++|+++|+|+.|+.+...+|.+.
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELP---DAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCcccc---CCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 47999998 667789999998764478888877999999999999999999999999999999999998888888887
Q ss_pred hhhcCCCCCcccceEEcCChHHHHHhCCccCC-----------------------CCccceEEEEEcCCCcEEEEEec
Q 024201 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPD-----------------------QGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~-----------------------~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
+ +++|+++.|++.++++.||+.... .+...|++||||++|+|++.+++
T Consensus 78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 6 789999999999999999995322 22468999999999999999753
No 28
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.90 E-value=9e-23 Score=172.65 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=109.4
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-------
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------- 150 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~------- 150 (271)
-..|..+|+|+++ +.+|+.++|++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++||+|++
T Consensus 13 ~~~~~~~pdf~l~---d~~G~~vsL~~~kGk-vvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e 87 (199)
T PTZ00056 13 DELRKSIYDYTVK---TLEGTTVPMSSLKNK-VLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQE 87 (199)
T ss_pred hhcCCCCCceEEE---CCCCCEEeHHHhCCC-EEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCC
Confidence 3468899999998 677889999999998 8999999 999999999999999999999999999999996
Q ss_pred -CCHHHHHHHHHHhhhcCCCCCcccceEEcC------ChHHHH--------HhCCccCCCCc-cceEEEEEcCCCcEEEE
Q 024201 151 -DSVFSHLAWVQTDRKSGGLGDLKYPLIADI------TKSISK--------SYGVLIPDQGI-ALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 151 -d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~------~~~~~~--------~ygv~~~~~g~-~~P~~~lID~~G~V~~~ 214 (271)
++.+++++|++++ +++||++.|. ...+.+ .|+......++ +.|++||||++|+|+++
T Consensus 88 ~d~~e~~~~f~~~~-------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~ 160 (199)
T PTZ00056 88 FPNTKDIRKFNDKN-------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY 160 (199)
T ss_pred CCCHHHHHHHHHHc-------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE
Confidence 4567888999887 7899998763 223322 23322111111 23589999999999998
Q ss_pred EeccCCCCCCHHHHHHHHHHHH
Q 024201 215 TINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 215 ~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.+.. ..+++.+.|+.+.
T Consensus 161 ~~g~~----~~~~l~~~I~~ll 178 (199)
T PTZ00056 161 FSPRT----EPLELEKKIAELL 178 (199)
T ss_pred eCCCC----CHHHHHHHHHHHH
Confidence 75432 3455556665553
No 29
>PLN02412 probable glutathione peroxidase
Probab=99.90 E-value=9.5e-23 Score=168.01 Aligned_cols=139 Identities=18% Similarity=0.224 Sum_probs=108.3
Q ss_pred CCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------C
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------S 152 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~ 152 (271)
-+.+|+|+++ +.+|+.++|++++|| ++||+|| ++|||.|..+++.|++++++|+++|+.||+|+.| +
T Consensus 6 ~~~~pdf~l~---d~~G~~v~l~~~~gk-~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~ 80 (167)
T PLN02412 6 PKSIYDFTVK---DIGGNDVSLNQYKGK-VLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGS 80 (167)
T ss_pred CCCCCceEEE---CCCCCEEeHHHhCCC-EEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCC
Confidence 3679999998 778889999999997 8999999 9999999999999999999999999999999975 3
Q ss_pred HHHHH-HHHHHhhhcCCCCCcccceEEc--CC-hHHHHHhCCccCCC------Cc-cceEEEEEcCCCcEEEEEeccCCC
Q 024201 153 VFSHL-AWVQTDRKSGGLGDLKYPLIAD--IT-KSISKSYGVLIPDQ------GI-ALRGLFIIDKEGVIQHSTINNLAI 221 (271)
Q Consensus 153 ~~~~~-~~~~~~~~~~~~~~~~f~~l~D--~~-~~~~~~ygv~~~~~------g~-~~P~~~lID~~G~V~~~~~~~~~~ 221 (271)
.+++. .|.+++ +++||++.| .+ ....+.|++...+. ++ ..|++||||++|+|++++.+..
T Consensus 81 ~~~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~-- 151 (167)
T PLN02412 81 NEEIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT-- 151 (167)
T ss_pred HHHHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC--
Confidence 33443 345665 789999874 44 36666666332111 11 4699999999999999987543
Q ss_pred CCCHHHHHHHHHHH
Q 024201 222 GRSVDETLRTLQAL 235 (271)
Q Consensus 222 ~~~~~e~l~~l~~l 235 (271)
+.+++.+.|+.+
T Consensus 152 --~~~~l~~~i~~~ 163 (167)
T PLN02412 152 --SPLKIEKDIQNL 163 (167)
T ss_pred --CHHHHHHHHHHH
Confidence 345666666655
No 30
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.90 E-value=4.8e-23 Score=161.85 Aligned_cols=108 Identities=19% Similarity=0.322 Sum_probs=98.4
Q ss_pred CceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC------CCHHHHHHHHHHhhhcCCC
Q 024201 96 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------DSVFSHLAWVQTDRKSGGL 169 (271)
Q Consensus 96 ~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~------d~~~~~~~~~~~~~~~~~~ 169 (271)
.|++++|++++|| ++||+|| ++|||+|..++|.|++++++++++|+.+|+|+. ++.+.+++|++++
T Consensus 12 ~~~~v~l~~~~gk-~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~------ 83 (126)
T cd03012 12 TDKPLSLAQLRGK-VVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY------ 83 (126)
T ss_pred CCCccCHHHhCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc------
Confidence 3568999999997 9999999 899999999999999999999999999999986 3467778888887
Q ss_pred CCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 170 GDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 170 ~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+++|+++.|.+.++++.|++. .+|++||||++|+|++++.++
T Consensus 84 -~~~~p~~~D~~~~~~~~~~v~------~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 84 -GITYPVANDNDYATWRAYGNQ------YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred -CCCCCEEECCchHHHHHhCCC------cCCeEEEECCCCcEEEEEecC
Confidence 789999999999999999998 899999999999999998764
No 31
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.89 E-value=5.1e-23 Score=167.00 Aligned_cols=122 Identities=18% Similarity=0.239 Sum_probs=98.1
Q ss_pred CCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------CHHH
Q 024201 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SVFS 155 (271)
Q Consensus 84 ~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~~~~ 155 (271)
+|+|++. +.+|+.++|++++|| ++||+|| ++||| |..++|.|++++++|+++|+.||+|+.| +.+.
T Consensus 2 ~~~f~l~---d~~G~~v~l~~~~Gk-~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~ 75 (152)
T cd00340 2 IYDFSVK---DIDGEPVSLSKYKGK-VLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEE 75 (152)
T ss_pred cceeEEE---CCCCCEEeHHHhCCC-EEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHH
Confidence 6999998 678889999999998 8999999 99999 9999999999999999899999999874 3567
Q ss_pred HHHHHHH-hhhcCCCCCcccceEEcC--ChH-HHHHhCCccCCC-------CccceEEEEEcCCCcEEEEEecc
Q 024201 156 HLAWVQT-DRKSGGLGDLKYPLIADI--TKS-ISKSYGVLIPDQ-------GIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~f~~l~D~--~~~-~~~~ygv~~~~~-------g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+++|+++ + +++||++.|. ++. ..+.|++..... -.+.|++||||++|+|++++.+.
T Consensus 76 ~~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~ 142 (152)
T cd00340 76 IKEFCETNY-------GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPT 142 (152)
T ss_pred HHHHHHHhc-------CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCC
Confidence 8899886 5 6889999864 333 455565321100 01244899999999999998765
No 32
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.89 E-value=9.1e-23 Score=170.57 Aligned_cols=141 Identities=19% Similarity=0.267 Sum_probs=101.1
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-------
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS------- 152 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~------- 152 (271)
.++.+|+|+++ +.+|+.++|++++||.++|+++| ++|||+|+.++|.|++++++|+++|+.||+|++|+
T Consensus 16 ~~~~~p~f~l~---d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 16 PTKSFFEFEAI---DIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CCCcccceEeE---cCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence 36789999998 67778999999999944455668 99999999999999999999999999999999752
Q ss_pred -HHHHHHHHH-HhhhcCCCCCcccceEEc--CChHH-HHHhCCccCC--------CCc-cce---EEEEEcCCCcEEEEE
Q 024201 153 -VFSHLAWVQ-TDRKSGGLGDLKYPLIAD--ITKSI-SKSYGVLIPD--------QGI-ALR---GLFIIDKEGVIQHST 215 (271)
Q Consensus 153 -~~~~~~~~~-~~~~~~~~~~~~f~~l~D--~~~~~-~~~ygv~~~~--------~g~-~~P---~~~lID~~G~V~~~~ 215 (271)
.++..+|.. ++ +++||++.| .++.. .+.|+..... .++ .+| ++||||++|+|++++
T Consensus 92 ~~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 92 DEPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred CHHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 345566654 44 788999965 44332 3333211000 011 345 579999999999998
Q ss_pred eccCCCCCCHHHHHHHHHHH
Q 024201 216 INNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 216 ~~~~~~~~~~~e~l~~l~~l 235 (271)
.+.. +.+++.+.|+.+
T Consensus 165 ~g~~----~~~~l~~~I~~l 180 (183)
T PTZ00256 165 SPKV----NPNEMIQDIEKL 180 (183)
T ss_pred CCCC----CHHHHHHHHHHH
Confidence 7643 334455555544
No 33
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.89 E-value=5e-22 Score=163.86 Aligned_cols=137 Identities=26% Similarity=0.445 Sum_probs=119.0
Q ss_pred CCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH-HH
Q 024201 77 PPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV-FS 155 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~-~~ 155 (271)
.+.+|+.+|+|++. +.+|+.+++++++|+ +++|+|| ++||+.|+.+++.|.++++++.+.++++|+|+.|.. +.
T Consensus 34 ~~~~g~~~p~~~~~---~~~g~~~~l~~~~~k-~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~ 108 (173)
T PRK03147 34 KVQVGKEAPNFVLT---DLEGKKIELKDLKGK-GVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELA 108 (173)
T ss_pred ccCCCCCCCCcEee---cCCCCEEeHHHcCCC-EEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHH
Confidence 37799999999998 667789999999987 8999999 999999999999999999999988999999999764 56
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
...|.+++ +.+|+++.|.++++.+.||+. ..|++||||++|+|+..+.+. ...+++.+.|+++
T Consensus 109 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~----~~~~~l~~~l~~~ 171 (173)
T PRK03147 109 VKNFVNRY-------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGE----MTEEQLEEYLEKI 171 (173)
T ss_pred HHHHHHHh-------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCC----CCHHHHHHHHHHh
Confidence 67888877 789999999999999999998 899999999999999886543 2456666666655
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.89 E-value=1.3e-22 Score=169.85 Aligned_cols=122 Identities=19% Similarity=0.306 Sum_probs=102.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-CHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-SVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-~~~~ 155 (271)
..+|+++|+|++.+++ .+|+.++++++ +|| ++||+|| ++|||+|+.++|.|.++++ +|++||+|+.+ +.+.
T Consensus 39 ~~~g~~~p~f~l~~~~-g~g~~~~~~~~~~gk-~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 39 ALIGKPVPKFRLESLE-NPGQFYQADVLTQGK-PVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhcCCCCCCcCCccCC-CCCccccHHHhcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHH
Confidence 4579999999998553 22567777776 677 9999999 9999999999999987653 58999999975 4566
Q ss_pred HHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC
Q 024201 156 HLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL 219 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~ 219 (271)
..+|.+++ +.+|+ ++.|.++.+.+.||+. .+|++||||++|+|++++.+..
T Consensus 112 ~~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~ 163 (185)
T PRK15412 112 AISWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDL 163 (185)
T ss_pred HHHHHHHc-------CCCCceEEEcCCccHHHhcCCC------cCCeEEEECCCceEEEEEecCC
Confidence 78899887 67888 4789999999999998 8999999999999999987654
No 35
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.89 E-value=2.3e-22 Score=168.92 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=107.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecc--cccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLS--DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Ls--d~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~ 155 (271)
+.+|+++|+|+++ +.+|+.++++ +++|| ++||+|| ++|||+|+.++|.+.+++++ .|+++++|+.|+.++
T Consensus 46 ~~vG~~aP~f~l~---d~~G~~v~l~~~~~~gk-~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~ 117 (189)
T TIGR02661 46 PDVGDAAPIFNLP---DFDGEPVRIGGSIAPGR-PTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAE 117 (189)
T ss_pred CCCCCcCCCcEec---CCCCCEEeccchhcCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHH
Confidence 6799999999998 6778899995 57888 8999999 99999999999999998765 378899999998899
Q ss_pred HHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+++|.+++ +++++.+. .++++.+.||+. .+|++||||++|+|++.. ..+..++++++++.++
T Consensus 118 ~~~~~~~~-------~~~~~~~~-~~~~i~~~y~v~------~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 118 HRRFLKDH-------ELGGERYV-VSAEIGMAFQVG------KIPYGVLLDQDGKIRAKG--LTNTREHLESLLEADR 179 (189)
T ss_pred HHHHHHhc-------CCCcceee-chhHHHHhccCC------ccceEEEECCCCeEEEcc--CCCCHHHHHHHHHHHH
Confidence 99999987 55655443 568999999998 899999999999999863 2233344555555543
No 36
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.89 E-value=3.1e-22 Score=162.50 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=103.8
Q ss_pred CCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--------CCHHH
Q 024201 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--------DSVFS 155 (271)
Q Consensus 84 ~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--------d~~~~ 155 (271)
+-+|++. +.+|+.++|++++|| ++||+|| ++|||+|..++|.|++++++|+++|+.||+|++ |+.+.
T Consensus 2 ~~~f~l~---~~~G~~~~l~~~~Gk-~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~ 76 (153)
T TIGR02540 2 FYSFEVK---DARGRTVSLEKYRGK-VSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKE 76 (153)
T ss_pred cccceeE---CCCCCEecHHHhCCC-EEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHH
Confidence 4578887 778889999999998 8999999 999999999999999999999999999999985 55678
Q ss_pred HHHHHHH-hhhcCCCCCcccceEEcC---ChHHH--HHhCCccCCCCccceE----EEEEcCCCcEEEEEeccCCCCCCH
Q 024201 156 HLAWVQT-DRKSGGLGDLKYPLIADI---TKSIS--KSYGVLIPDQGIALRG----LFIIDKEGVIQHSTINNLAIGRSV 225 (271)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~f~~l~D~---~~~~~--~~ygv~~~~~g~~~P~----~~lID~~G~V~~~~~~~~~~~~~~ 225 (271)
+++|+++ + +++||++.|. +.... ..|.+... + ..|+ +||||++|+|++.+.+. ...
T Consensus 77 ~~~f~~~~~-------~~~fp~~~d~~~~~~~~~~~~~~~~~~~--~-~~p~~~~~tflID~~G~v~~~~~g~----~~~ 142 (153)
T TIGR02540 77 IESFARRNY-------GVTFPMFSKIKILGSEAEPAFRFLVDSS--K-KEPRWNFWKYLVNPEGQVVKFWRPE----EPV 142 (153)
T ss_pred HHHHHHHhc-------CCCCCccceEecCCCCCCcHHHHHHhcC--C-CCCCCccEEEEEcCCCcEEEEECCC----CCH
Confidence 8999975 5 7899999772 22222 23333211 1 2455 99999999999998654 345
Q ss_pred HHHHHHHHHH
Q 024201 226 DETLRTLQAL 235 (271)
Q Consensus 226 ~e~l~~l~~l 235 (271)
+++.+.|+.+
T Consensus 143 ~~l~~~i~~l 152 (153)
T TIGR02540 143 EEIRPEITAL 152 (153)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 37
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3e-21 Score=153.50 Aligned_cols=147 Identities=33% Similarity=0.526 Sum_probs=133.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|+.+|||+|. |++|+.|+|.++.|+++||++|||+.-.|.|..+...+.+.|+++++.+.+|+++|.|+...++
T Consensus 63 v~~Gd~iPD~tL~---dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqK 139 (211)
T KOG0855|consen 63 VNKGDAIPDFTLK---DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQK 139 (211)
T ss_pred eecCCcCCCcccc---cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHH
Confidence 7899999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC-CCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD-QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~-~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+|...+ +++|.+|+|+.+++.+.+|+..+. .|...+..||+|++|....+.......+.++++.++.|.+
T Consensus 140 aF~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855|consen 140 AFASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred Hhhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence 999988 899999999999999999999754 4457899999999888777765666778889998887753
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.86 E-value=3.4e-21 Score=151.26 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=100.4
Q ss_pred CCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC-CCHHHHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST-DSVFSHLAWV 160 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~-d~~~~~~~~~ 160 (271)
+++|+|+++++.+ +++.+++++++|+ ++||+|| ++|||.|+.++|.|.++++++ +++||+|+. ++.+.+++|.
T Consensus 1 ~~~p~f~~~~~~g-~~~~~~~~~~~gk-~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 1 KPAPAFSLPALPG-PDKTLTSADLKGK-PYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWL 74 (127)
T ss_pred CCCCCcccccccC-CCccccHHHcCCC-EEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHH
Confidence 3689999985433 2378999999998 8999999 999999999999999988764 599999997 4567778888
Q ss_pred HHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 161 QTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+.+ ++.|+ ++.|.++++++.|++. .+|++||||++|+|++++.+.
T Consensus 75 ~~~-------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~ 120 (127)
T cd03010 75 ARH-------GNPYAAVGFDPDGRVGIDLGVY------GVPETFLIDGDGIIRYKHVGP 120 (127)
T ss_pred Hhc-------CCCCceEEECCcchHHHhcCCC------CCCeEEEECCCceEEEEEecc
Confidence 876 66775 6689999999999999 899999999999999997654
No 39
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.86 E-value=4.7e-21 Score=158.78 Aligned_cols=132 Identities=19% Similarity=0.264 Sum_probs=105.4
Q ss_pred CCCCCCCCCeEEeeecCCCce--eEecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-H
Q 024201 78 PLVGNTAPDFAAEAVFDQEFI--NVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-V 153 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~--~v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~ 153 (271)
..+|+++|+|++++ .+|+ .++++++ +|| ++||+|| ++|||+|+.++|.+.++++ +|+++|+|+.++ .
T Consensus 34 ~~vG~~ap~f~l~~---~~G~~~~~~~~~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 34 ALIGKPVPAFPLAA---LREPLQAYTPEAFIQGK-PVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQS 104 (173)
T ss_pred hhcCCCCCCccccc---cCCCCcccCHHHhcCCC-EEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCCh
Confidence 45899999999984 4444 5666776 566 9999999 9999999999999877653 489999999864 4
Q ss_pred HHHHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 154 FSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
++..+|.+++ +++|+ ++.|.++++++.|++. .+|++|+||+||+|++++.+.. +.+++.+.+
T Consensus 105 ~~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~----~~~~l~~~l 167 (173)
T TIGR00385 105 QNALKFLKEL-------GNPYQAILIDPNGKLGLDLGVY------GAPETFLVDGNGVILYRHAGPL----NNEVWTEGF 167 (173)
T ss_pred HHHHHHHHHc-------CCCCceEEECCCCchHHhcCCe------eCCeEEEEcCCceEEEEEeccC----CHHHHHHHH
Confidence 5567888877 67887 5689999999999998 7899999999999999986642 345555555
Q ss_pred HHH
Q 024201 233 QAL 235 (271)
Q Consensus 233 ~~l 235 (271)
+++
T Consensus 168 ~~~ 170 (173)
T TIGR00385 168 LPA 170 (173)
T ss_pred HHH
Confidence 543
No 40
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.86 E-value=1.1e-20 Score=145.34 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=95.5
Q ss_pred CCeEEeeecCCCceeEeccccc-CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHh
Q 024201 85 PDFAAEAVFDQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~-gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~ 163 (271)
|+|++. +.+|+.++|++++ || ++||+|| ++||++|+.++|.|.++++++++ ++.+++|+.++.+...+|.+++
T Consensus 1 p~f~l~---~~~G~~~~l~~~~~gk-~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~ 74 (114)
T cd02967 1 PTFDLT---TIDGAPVRIGGISPGR-PTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH 74 (114)
T ss_pred CCceee---cCCCCEEEcccccCCC-eEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh
Confidence 789998 6677899999998 87 9999999 99999999999999999888754 6899988877778888899987
Q ss_pred hhcCCCCCc-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 164 RKSGGLGDL-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 164 ~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
++ .||++. +.++.+.|++. .+|++||||++|+|+++.
T Consensus 75 -------~~~~~p~~~--~~~~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 -------GLEAFPYVL--SAELGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred -------CCCCCcEEe--cHHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 55 478776 35789999998 899999999999999874
No 41
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.85 E-value=1.2e-20 Score=150.57 Aligned_cols=121 Identities=20% Similarity=0.331 Sum_probs=102.9
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCC-hHHHHHHHHHHHHHHHhcC---cEEEEEeCCC----HH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV-CPTEITAFSDRYTEFEKLN---TEILGVSTDS----VF 154 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~-C~~~l~~L~~~~~~~~~~g---v~vv~VS~d~----~~ 154 (271)
.+|+|++. +.+|+.+++.+++|| ++||+|| ++||+. |..+++.|++++++++++| +++|+|+.|+ ++
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk-~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~ 75 (142)
T cd02968 1 IGPDFTLT---DQDGRPVTLSDLKGK-PVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPE 75 (142)
T ss_pred CCCceEEE---cCCCCEEchHHhCCC-EEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHH
Confidence 47999998 677889999999998 9999999 899997 9999999999999998865 9999999864 46
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCC---hHHHHHhCCccCCC-------Cc-cceEEEEEcCCCcEEEEE
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADIT---KSISKSYGVLIPDQ-------GI-ALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~---~~~~~~ygv~~~~~-------g~-~~P~~~lID~~G~V~~~~ 215 (271)
.+++|.+++ +.+|+++.|.+ ..+++.||+..... ++ +.|.+||||++|+|++.+
T Consensus 76 ~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 76 VLKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 677888887 67899999875 78999999874321 11 467899999999999985
No 42
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.84 E-value=6.9e-21 Score=152.78 Aligned_cols=102 Identities=12% Similarity=0.218 Sum_probs=85.5
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-------CcEEEEEeCCCHH-HHHHHHHHhhhcCCCC
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-------NTEILGVSTDSVF-SHLAWVQTDRKSGGLG 170 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-------gv~vv~VS~d~~~-~~~~~~~~~~~~~~~~ 170 (271)
.++|++|+|| +++|+|| ++|||+|+.++|.|.++|++++++ +++||+||.|... ..++|.+++
T Consensus 17 ~~~ls~~kgk-~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------- 87 (146)
T cd03008 17 REIVARLENR-VLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------- 87 (146)
T ss_pred cccHHHhCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence 5688999998 9999999 999999999999999999988754 6999999998643 456777776
Q ss_pred Ccccc---eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 171 DLKYP---LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 171 ~~~f~---~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
++.|+ +..+.+..+++.|++. .+|++||||++|+|+...
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v~------~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSVE------ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCCceeecccchHHHHHHHHcCCC------CCCEEEEECCCCcEEeeC
Confidence 54553 3333346899999998 899999999999999983
No 43
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.83 E-value=1.6e-19 Score=170.91 Aligned_cols=132 Identities=17% Similarity=0.263 Sum_probs=109.7
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS----- 152 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~----- 152 (271)
+.+++.+|+|++. +.+|+.+.++ +|| ++||+|| ++||++|+.++|.|.+++++++.++++||+|+.+.
T Consensus 32 ~~~~~~lP~f~l~---D~dG~~v~ls--kGK-pVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~ 104 (521)
T PRK14018 32 ATVPHTLSTLKTA---DNRPASVYLK--KDK-PTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEK 104 (521)
T ss_pred ccccCCCCCeEee---cCCCceeecc--CCC-EEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccc
Confidence 5678899999998 7888899998 787 9999999 99999999999999999999988889999998732
Q ss_pred -HHHHHHHHHHhhhcCCCCCc-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 153 -VFSHLAWVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
..+..+|.+.+ ++ .|+++.|.+.++++.|++. .+|++||||++|+|+....+.. ..+++.+
T Consensus 105 ~~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~----~~eeL~a 167 (521)
T PRK14018 105 KDGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSI----SEAQALA 167 (521)
T ss_pred cHHHHHHHHHhC-------CCcccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCC----CHHHHHH
Confidence 23345555543 33 6789999999999999999 8999999999999999987653 3455555
Q ss_pred HHH
Q 024201 231 TLQ 233 (271)
Q Consensus 231 ~l~ 233 (271)
.|+
T Consensus 168 ~Ie 170 (521)
T PRK14018 168 LIR 170 (521)
T ss_pred HHH
Confidence 555
No 44
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.82 E-value=2.8e-19 Score=135.68 Aligned_cols=112 Identities=28% Similarity=0.496 Sum_probs=101.1
Q ss_pred CeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--HHHHHHHHHHh
Q 024201 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--VFSHLAWVQTD 163 (271)
Q Consensus 86 df~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--~~~~~~~~~~~ 163 (271)
+|++. +.+|+.+++.+++|+ ++||+|| ++||+.|...++.|.++.+++++.++.+++|+.|. .+..++|.+.+
T Consensus 1 ~~~~~---~~~g~~~~~~~~~~k-~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 1 DFSLP---DLDGKPVSLSDLKGK-VVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred Ccccc---CCCCCEeehHHcCCC-EEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc
Confidence 35665 567779999999987 8999999 89999999999999999999987789999999998 78888888887
Q ss_pred hhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 164 RKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 164 ~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
+.+|+++.|.+.++.+.|++. ..|.++|+|++|+|++.+
T Consensus 76 -------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 76 -------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred -------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEe
Confidence 689999999999999999998 899999999999999875
No 45
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.81 E-value=4.7e-19 Score=147.05 Aligned_cols=142 Identities=12% Similarity=0.167 Sum_probs=108.9
Q ss_pred CCCCCCCCCeEEeee-------cCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEE-----
Q 024201 78 PLVGNTAPDFAAEAV-------FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI----- 145 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~-------~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~v----- 145 (271)
+.+|+.+|..++.+- ++-+.+.++.++++|| +.||+|| |+||+.|+.+.|.|.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GK-V~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGK-VRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCC-EEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 567888888876521 1224468899999999 8999999 99999999999999988 5568989
Q ss_pred -EEEeCCCH-HHHHHHHHHhhhcCCCCCcccc---eEEcCChHHHHHhCCccCCCCccceEE-EEEcCCCcEEEEEeccC
Q 024201 146 -LGVSTDSV-FSHLAWVQTDRKSGGLGDLKYP---LIADITKSISKSYGVLIPDQGIALRGL-FIIDKEGVIQHSTINNL 219 (271)
Q Consensus 146 -v~VS~d~~-~~~~~~~~~~~~~~~~~~~~f~---~l~D~~~~~~~~ygv~~~~~g~~~P~~-~lID~~G~V~~~~~~~~ 219 (271)
++|+.|+. .....|.+.+.+.. +..|| ++.|.++.+...||+. ..|++ ||||++|+|++++.+..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~---~~~~P~~~vllD~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~~~~G~l 167 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKG---KKENPWSQVVLDDKGAVKNAWQLN------SEDSAIIVLDKTGKVKFVKEGAL 167 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHh---cccCCcceEEECCcchHHHhcCCC------CCCceEEEECCCCcEEEEEeCCC
Confidence 99999863 34455666554443 45666 9999999999999999 88888 89999999999987754
Q ss_pred CCCCCHHHHHHHHHHH
Q 024201 220 AIGRSVDETLRTLQAL 235 (271)
Q Consensus 220 ~~~~~~~e~l~~l~~l 235 (271)
..+ .+++++..|+++
T Consensus 168 ~~e-e~e~~~~li~~l 182 (184)
T TIGR01626 168 SDS-DIQTVISLVNGL 182 (184)
T ss_pred CHH-HHHHHHHHHHHH
Confidence 322 345566666554
No 46
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.80 E-value=2.2e-18 Score=143.58 Aligned_cols=139 Identities=10% Similarity=0.158 Sum_probs=102.1
Q ss_pred CCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------CH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SV 153 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~~ 153 (271)
+.+++|++. +.+|+.++|++|+|| ++||+|| ++||+.|. +++.|++++++|+++|++||+|++| +.
T Consensus 3 ~~~~~f~~~---~~~G~~v~Ls~~~GK-vvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~ 76 (183)
T PRK10606 3 DSILTTVVT---TIDGEVTTLEKYAGN-VLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSD 76 (183)
T ss_pred CCccCcEeE---CCCCCEEeHHHhCCC-EEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCH
Confidence 358999998 667789999999998 8999999 99999995 7999999999999999999999984 56
Q ss_pred HHHHHHHH-HhhhcCCCCCcccceEEcC--C----hHHHHHhCCccC------------------------CCCccceEE
Q 024201 154 FSHLAWVQ-TDRKSGGLGDLKYPLIADI--T----KSISKSYGVLIP------------------------DQGIALRGL 202 (271)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~f~~l~D~--~----~~~~~~ygv~~~------------------------~~g~~~P~~ 202 (271)
+++++|++ .+ +++||++.+. + ..+.+-+.-..+ ..-.+..+.
T Consensus 77 ~ei~~f~~~~~-------g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~K 149 (183)
T PRK10606 77 EEIKTYCRTTW-------GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEK 149 (183)
T ss_pred HHHHHHHHHcc-------CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEE
Confidence 77888887 45 7899999444 3 223332210000 000156789
Q ss_pred EEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 203 FIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 203 ~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
||||++|+++.++-.. +.....++.+.|+.+
T Consensus 150 FLv~~~G~vv~r~~~~--~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 150 FLVGRDGQVIQRFSPD--MTPEDPIVMESIKLA 180 (183)
T ss_pred EEECCCCcEEEEECCC--CCCCHHHHHHHHHHH
Confidence 9999999999996433 222334466666654
No 47
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.79 E-value=1.1e-18 Score=135.94 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=95.8
Q ss_pred CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--HHHHHHHHHH
Q 024201 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--VFSHLAWVQT 162 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--~~~~~~~~~~ 162 (271)
|+|++. +.+|+.+++.+++|+ ++||+|| ++||+.|+.+++.|++++++ +++++|+.|+ .+.+.+|.++
T Consensus 1 p~f~l~---~~~g~~~~~~~~~~k-~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 1 PLFTAT---TLDGEQFDLESLSGK-PVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred CCceee---cCCCCEeeHHHhCCC-EEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHH
Confidence 789998 666779999999997 8999999 99999999999999999876 6678887764 5777888888
Q ss_pred hhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
+ +++|+++.|.+.++.+.|++. ..|+++|||++| |+++..+
T Consensus 71 ~-------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~g 111 (123)
T cd03011 71 K-------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTTG 111 (123)
T ss_pred c-------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEec
Confidence 7 679999999999999999998 899999999999 8888654
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.78 E-value=2.2e-18 Score=176.82 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=112.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEec-ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC---CC-
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKL-SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST---DS- 152 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~L-sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~---d~- 152 (271)
..+|+++|+|..... ..+|+++++ ++++|| ++||+|| ++||++|+.++|.|++++++|+++++.||+|+. |.
T Consensus 391 ~~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK-~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~ 467 (1057)
T PLN02919 391 KKTATKVPEFPPKLD-WLNTAPLQFRRDLKGK-VVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE 467 (1057)
T ss_pred cccCCcCCCCccccc-ccCCccccchhhcCCC-EEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc
Confidence 557999999998632 245678998 689998 9999999 999999999999999999999988999999974 32
Q ss_pred --HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 153 --VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 153 --~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
.+..++|.+++ +++||++.|.+.++++.|++. .+|++||||++|+|+.+..+. ...+++.+
T Consensus 468 ~~~~~~~~~~~~~-------~i~~pvv~D~~~~~~~~~~V~------~iPt~ilid~~G~iv~~~~G~----~~~~~l~~ 530 (1057)
T PLN02919 468 KDLEAIRNAVLRY-------NISHPVVNDGDMYLWRELGVS------SWPTFAVVSPNGKLIAQLSGE----GHRKDLDD 530 (1057)
T ss_pred ccHHHHHHHHHHh-------CCCccEEECCchHHHHhcCCC------ccceEEEECCCCeEEEEEecc----cCHHHHHH
Confidence 23345555555 789999999999999999998 899999999999999996553 23455555
Q ss_pred HHHHH
Q 024201 231 TLQAL 235 (271)
Q Consensus 231 ~l~~l 235 (271)
.|+.+
T Consensus 531 ~l~~~ 535 (1057)
T PLN02919 531 LVEAA 535 (1057)
T ss_pred HHHHH
Confidence 55544
No 49
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.78 E-value=1.9e-18 Score=136.80 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=85.2
Q ss_pred eeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCH-HHHHHHHHHhhhcCCCCCccc
Q 024201 98 INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSV-FSHLAWVQTDRKSGGLGDLKY 174 (271)
Q Consensus 98 ~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~-~~~~~~~~~~~~~~~~~~~~f 174 (271)
+++++++++|| ++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|.. ....+|.+++ + .|
T Consensus 8 ~~v~l~~~~Gk-~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~-------~-~~ 77 (132)
T cd02964 8 GVVPVSALEGK-TVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM-------P-PW 77 (132)
T ss_pred ccccHHHhCCC-EEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------C-Ce
Confidence 69999999998 8999999 999999999999999999999875 799999999864 4556777765 2 33
Q ss_pred ceEE--c--CChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 175 PLIA--D--ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 175 ~~l~--D--~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
..+. | ....+++.|++. .+|+++|||++|+|++..
T Consensus 78 ~~~~~~d~~~~~~~~~~~~v~------~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 78 LAVPFEDEELRELLEKQFKVE------GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred EeeccCcHHHHHHHHHHcCCC------CCCEEEEECCCCCEEchh
Confidence 3332 2 235788899998 899999999999999874
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.77 E-value=1.1e-18 Score=137.71 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=86.9
Q ss_pred CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCHHHHHHHHHHhhhcCCCCC
Q 024201 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSVFSHLAWVQTDRKSGGLGD 171 (271)
Q Consensus 94 ~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~ 171 (271)
+.+|+.++|++++|| ++||+|| ++||+.|+.++|.|++++++++++ +++|++|+.|... ..|.+.+.+.. ...
T Consensus 5 ~~~G~~v~l~~~~gk-~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~~-~~~ 79 (131)
T cd03009 5 RNDGGKVPVSSLEGK-TVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSKMP-WLA 79 (131)
T ss_pred ccCCCCccHHHhCCc-EEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHcCC-eeE
Confidence 678889999999998 8999999 899999999999999999999865 7999999998643 34444432211 111
Q ss_pred cccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 172 LKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 172 ~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
++|.. .|....+++.||+. .+|+++|||++|+|+...
T Consensus 80 ~~~~~-~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 80 VPFSD-RERRSRLNRTFKIE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred cccCC-HHHHHHHHHHcCCC------CCCEEEEECCCCCEEccc
Confidence 22221 24457899999998 899999999999999874
No 51
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.74 E-value=3.6e-17 Score=135.18 Aligned_cols=120 Identities=9% Similarity=0.090 Sum_probs=93.9
Q ss_pred CCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHH
Q 024201 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~ 158 (271)
.+....|+|++. +|+.+++++++ ||+|| ++|||+|+.++|.|+++++++ |++|++|+.|...
T Consensus 50 ~~~~~~~~f~l~-----dG~~v~lsd~~-----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~---- 111 (181)
T PRK13728 50 TEKPAPRWFRLS-----NGRQVNLADWK-----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG---- 111 (181)
T ss_pred cCCCCCCccCCC-----CCCEeehhHce-----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC----
Confidence 456678899984 67899999997 77899 999999999999999999997 6999999988521
Q ss_pred HHHHhhhcCCCCCcccceEEc-CChHHHHHhCCccCCCCccceEEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHHHHH
Q 024201 159 WVQTDRKSGGLGDLKYPLIAD-ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQH-STINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D-~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~-~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
...||++.| ..+.+.+.||+... .+|++||||++|++++ .+.+.. +.+++.+.++.+.
T Consensus 112 ------------~~~fPv~~dd~~~~~~~~~g~~~~----~iPttfLId~~G~i~~~~~~G~~----~~~~L~~~I~~ll 171 (181)
T PRK13728 112 ------------DTAFPEALPAPPDVMQTFFPNIPV----ATPTTFLVNVNTLEALPLLQGAT----DAAGFMARMDTVL 171 (181)
T ss_pred ------------CCCCceEecCchhHHHHHhCCCCC----CCCeEEEEeCCCcEEEEEEECCC----CHHHHHHHHHHHH
Confidence 358899985 56778889995111 7899999999999975 565542 3456666666553
No 52
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.9e-16 Score=122.25 Aligned_cols=135 Identities=28% Similarity=0.544 Sum_probs=116.6
Q ss_pred eeecccCcCCCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE
Q 024201 69 VVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (271)
Q Consensus 69 ~~~~~~~~~~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 148 (271)
.++..+.. +++|+++|+|++. +.+.+.++|.++.|| ..||..+|.--.|+|..+...+++...++. ++.++.|
T Consensus 10 pv~l~g~~-~~vGd~ap~ftl~---~~dL~~v~l~~~~gk-~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~I 82 (158)
T COG2077 10 PVTLKGNE-PQVGDKAPDFTLV---GKDLNDVSLADFAGK-KKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCI 82 (158)
T ss_pred eEEecCCC-CccCCcCCceEEE---cCcccceeccccCCc-eEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEE
Confidence 34455566 8999999999998 778889999999999 677888888889999999999999998887 6999999
Q ss_pred eCCCHHHHHHHHHHhhhcCCCCCcccceEEcC-ChHHHHHhCCccCCC---CccceEEEEEcCCCcEEEEEe
Q 024201 149 STDSVFSHLAWVQTDRKSGGLGDLKYPLIADI-TKSISKSYGVLIPDQ---GIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 149 S~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~-~~~~~~~ygv~~~~~---g~~~P~~~lID~~G~V~~~~~ 216 (271)
|.|-++.+.+|+..+ |+. +...++|. +.++.+.||+...+. |+.-++.|++|.+|+|+|..+
T Consensus 83 S~DLPFAq~RfC~ae----Gi~--nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 83 SMDLPFAQKRFCGAE----GIE--NVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred eCCChhHHhhhhhhc----Ccc--cceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 999999999999998 443 36678876 477999999998764 788899999999999999965
No 53
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.69 E-value=2.1e-16 Score=117.55 Aligned_cols=91 Identities=24% Similarity=0.473 Sum_probs=70.9
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC---Ch
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI---TK 182 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~---~~ 182 (271)
|| +++|+|| ++||+.|..++|.|.+++++++ +.++++|+|+.|.. ..+|.+...+. +.+|..+... ..
T Consensus 1 gK-~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GK-PVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKKN----NFPWYNVPFDDDNNS 72 (95)
T ss_dssp TS-EEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHTC----TTSSEEEETTTHHHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHhc----CCCceEEeeCcchHH
Confidence 56 9999999 9999999999999999999999 66899999999863 33444444322 3455555443 47
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcE
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVI 211 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V 211 (271)
++.+.|++. .+|+++|||++|+|
T Consensus 73 ~l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-T------SSSEEEEEETTSBE
T ss_pred HHHHHCCCC------cCCEEEEECCCCCC
Confidence 899999999 89999999999997
No 54
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8e-16 Score=120.75 Aligned_cols=148 Identities=24% Similarity=0.407 Sum_probs=114.8
Q ss_pred CCCCCCCCCeEEeeecCCC----ceeEecccccCCcEEEEEEecCCCCCChHH-HHHHHHHHHHHHHhcCcE-EEEEeCC
Q 024201 78 PLVGNTAPDFAAEAVFDQE----FINVKLSDYIGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEFEKLNTE-ILGVSTD 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~----g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~-~l~~L~~~~~~~~~~gv~-vv~VS~d 151 (271)
+++|+++|..++.+-...+ -..++..++-..|.|||+-.|+.+.|.|.. ++|.+.+++++|+++||+ |+.||+|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 6799999999998542211 246677776443479999999999999985 899999999999999995 6679999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC----c-cceEEEEEcCCCcEEEEEeccCCC---CC
Q 024201 152 SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG----I-ALRGLFIIDKEGVIQHSTINNLAI---GR 223 (271)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g----~-~~P~~~lID~~G~V~~~~~~~~~~---~~ 223 (271)
+.+.+.+|.+.. +..+ +..++.|.++++++.+|+..+..+ . ..++..|| +||+|.+.++.+... ..
T Consensus 83 D~FVm~AWak~~----g~~~-~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p~~~~~vS 156 (165)
T COG0678 83 DAFVMNAWAKSQ----GGEG-NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPPGDPFTVS 156 (165)
T ss_pred cHHHHHHHHHhc----CCCc-cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCCCCceeec
Confidence 999999999988 3322 678999999999999999876532 2 35677777 799999998876332 23
Q ss_pred CHHHHHHH
Q 024201 224 SVDETLRT 231 (271)
Q Consensus 224 ~~~e~l~~ 231 (271)
+++.+|+.
T Consensus 157 ~a~~mL~~ 164 (165)
T COG0678 157 SADTMLAQ 164 (165)
T ss_pred CHHHHHhc
Confidence 45555543
No 55
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.65 E-value=6.2e-16 Score=128.24 Aligned_cols=128 Identities=23% Similarity=0.322 Sum_probs=95.2
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCH---
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKL--NTEILGVSTDSV--- 153 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~--- 153 (271)
.....|+|+|. |++|+.+++++++|| ++||+|. .+.|| .|+..+..|.++++++.++ .+++|.||+|+.
T Consensus 28 ~~~~~~~f~L~---d~~G~~~~~~~~~Gk-~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DT 102 (174)
T PF02630_consen 28 NPRIVPDFTLT---DQDGKTVTLDDLKGK-WVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDT 102 (174)
T ss_dssp TSCSSST-EEE---ETTSSEEEGGGGTTS-EEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-
T ss_pred CCccCCCcEEE---cCCCCEecHHHhCCC-eEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCC
Confidence 34567899998 889999999999999 8888888 78897 7999999999999999864 699999999864
Q ss_pred -HHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC------CC----ccceEEEEEcCCCcEEEEEe
Q 024201 154 -FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD------QG----IALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~------~g----~~~P~~~lID~~G~V~~~~~ 216 (271)
+.+++|.+.+ +..-..|....+.-.++++.|++.... .+ .|...+||||++|+|+..+.
T Consensus 103 p~~L~~Y~~~~----~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 103 PEVLKKYAKKF----GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHCH----TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHhc----CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 4555666655 322223333333347788999977432 11 37789999999999999863
No 56
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.61 E-value=8.2e-15 Score=124.63 Aligned_cols=139 Identities=19% Similarity=0.278 Sum_probs=110.2
Q ss_pred CeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHH---hcCcEEEEEeCCCHHHHHHHHH
Q 024201 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFE---KLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 86 df~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~---~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
+|+|. +++|+.+++.+++|+ ++||+|. .++|| +|+.++..|.++++++. ..+|+++.||+|+..+..+.++
T Consensus 49 ~f~l~---d~~G~~~~~~~l~Gk-~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk 123 (207)
T COG1999 49 DFELT---DQDGKPFTLKDLKGK-PSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLK 123 (207)
T ss_pred ceeee---cCCCCEeeccccCCC-EEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHH
Confidence 89997 999999999999999 8888888 79998 89999999999999998 4468999999998887777777
Q ss_pred Hhhh-cCCCCCcccceEEcC---ChHHHHHhCCccC---CC------CccceEEEEEcCCCcEEEEEeccCCCCCCHHHH
Q 024201 162 TDRK-SGGLGDLKYPLIADI---TKSISKSYGVLIP---DQ------GIALRGLFIIDKEGVIQHSTINNLAIGRSVDET 228 (271)
Q Consensus 162 ~~~~-~~~~~~~~f~~l~D~---~~~~~~~ygv~~~---~~------g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~ 228 (271)
+|.+ .. ...|..+... ..+++++|++... .. -.|.-.+||||++|+++....+. ...+++
T Consensus 124 ~Y~~~~~---~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~----~~~~~i 196 (207)
T COG1999 124 KYAELNF---DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG----EPPEEI 196 (207)
T ss_pred HHhcccC---CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCC----CChHHH
Confidence 7765 22 3455555542 3788999999851 11 13678899999999999996443 237888
Q ss_pred HHHHHHHH
Q 024201 229 LRTLQALQ 236 (271)
Q Consensus 229 l~~l~~l~ 236 (271)
++.|+.+.
T Consensus 197 ~~~l~~l~ 204 (207)
T COG1999 197 AADLKKLL 204 (207)
T ss_pred HHHHHHHh
Confidence 88887663
No 57
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.6e-14 Score=114.09 Aligned_cols=148 Identities=24% Similarity=0.362 Sum_probs=113.8
Q ss_pred CCCCCCCCCCeEEeeecCCC----ceeEecccc-cCCcEEEEEEecCCCCCCh-HHHHHHHHHHHHHHHhcCcE-EEEEe
Q 024201 77 PPLVGNTAPDFAAEAVFDQE----FINVKLSDY-IGKKYVILFFYPLDFTFVC-PTEITAFSDRYTEFEKLNTE-ILGVS 149 (271)
Q Consensus 77 ~~~~G~~~Pdf~l~~~~~~~----g~~v~Lsd~-~gkk~vvL~F~~~t~Cp~C-~~~l~~L~~~~~~~~~~gv~-vv~VS 149 (271)
.+.+|+.+|+-++...++.. +.+++++++ +|| .+||+-.|+.+.|.| ..++|.+.+..+||+.+||+ |+.||
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GK-KvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGK-KVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCc-eEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 37899999994433222322 238899886 665 799999999999997 58899999999999999996 66699
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCC----CccceEEEEEcCCCcEEEEEeccCCCC---
Q 024201 150 TDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ----GIALRGLFIIDKEGVIQHSTINNLAIG--- 222 (271)
Q Consensus 150 ~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~----g~~~P~~~lID~~G~V~~~~~~~~~~~--- 222 (271)
+|+++.+.+|.+.+.+ +-...++.|.++++.+.+|+..+.. |.+..++-++=.||+|...++++.+.+
T Consensus 87 VnDpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~g~~~t~ 161 (171)
T KOG0541|consen 87 VNDPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEGGTDFTV 161 (171)
T ss_pred cCcHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEeccCCCceEE
Confidence 9999999999999833 2367799999999999999987642 345555555557999999998766543
Q ss_pred CCHHHHHH
Q 024201 223 RSVDETLR 230 (271)
Q Consensus 223 ~~~~e~l~ 230 (271)
..++.++.
T Consensus 162 ssa~~il~ 169 (171)
T KOG0541|consen 162 SSAEDILK 169 (171)
T ss_pred ecHHHHhh
Confidence 23455544
No 58
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.56 E-value=1.5e-14 Score=117.33 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=71.6
Q ss_pred ceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccce
Q 024201 97 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPL 176 (271)
Q Consensus 97 g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~ 176 (271)
|+.+.+++ +.||+|| ++|||+|+.++|.|+++++++ |+.|++|+.|.... ..|+.
T Consensus 44 G~~~~l~~-----~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~----------------~~fp~ 98 (153)
T TIGR02738 44 GRHANQDD-----YALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL----------------TGFPD 98 (153)
T ss_pred chhhhcCC-----CEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc----------------ccccc
Confidence 55666554 4599999 999999999999999999887 68999999886321 13444
Q ss_pred EEcCChHHH-HHh---CCccCCCCccceEEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHHH
Q 024201 177 IADITKSIS-KSY---GVLIPDQGIALRGLFIIDKEGVIQH-STINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 177 l~D~~~~~~-~~y---gv~~~~~g~~~P~~~lID~~G~V~~-~~~~~~~~~~~~~e~l~~l~~ 234 (271)
..|.+.+.. +.| ++. .+|++||||++|+++. +..+.. +.+++.+.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~v~------~iPTt~LID~~G~~i~~~~~G~~----s~~~l~~~I~~ 151 (153)
T TIGR02738 99 PLPATPEVMQTFFPNPRPV------VTPATFLVNVNTRKAYPVLQGAV----DEAELANRMDE 151 (153)
T ss_pred ccCCchHHHHHHhccCCCC------CCCeEEEEeCCCCEEEEEeeccc----CHHHHHHHHHH
Confidence 444444443 445 666 7999999999988654 444432 34455555543
No 59
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.3e-13 Score=107.67 Aligned_cols=137 Identities=20% Similarity=0.282 Sum_probs=99.7
Q ss_pred CCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC--------CHH
Q 024201 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SVF 154 (271)
Q Consensus 83 ~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d--------~~~ 154 (271)
.+.||++. +.+|+.++|++|+|| |||+...|+.|...+ +...|..+|++|+++|+.|+++.+| +.+
T Consensus 4 ~~yd~~~~---~~~G~~~~l~~~~Gk--VlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~e 77 (162)
T COG0386 4 SIYDFSVK---DIDGEPVSLSDYKGK--VLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDE 77 (162)
T ss_pred ccccceee---ccCCCCccHHHhCCc--EEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHH
Confidence 46788888 677789999999999 677777799999988 8999999999999999999999886 446
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCC------hHHHHHhCCccC-----CCCccceEEEEEcCCCcEEEEEeccCCCCC
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADIT------KSISKSYGVLIP-----DQGIALRGLFIIDKEGVIQHSTINNLAIGR 223 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~------~~~~~~ygv~~~-----~~g~~~P~~~lID~~G~V~~~~~~~~~~~~ 223 (271)
++.+|.+.. ++.+||++...+ .-+.+.+--... ..--+..+.||||+||+|+.++-.. .
T Consensus 78 EI~~fC~~~------YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~----t 147 (162)
T COG0386 78 EIAKFCQLN------YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPK----T 147 (162)
T ss_pred HHHHHHHhc------cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCC----C
Confidence 777887765 588999987443 122222211110 0112678999999999999997332 2
Q ss_pred CHHHHHHHHHHH
Q 024201 224 SVDETLRTLQAL 235 (271)
Q Consensus 224 ~~~e~l~~l~~l 235 (271)
..+++...|+++
T Consensus 148 ~P~d~~~~Ie~l 159 (162)
T COG0386 148 KPEDIELAIEKL 159 (162)
T ss_pred ChhhHHHHHHHH
Confidence 334444455554
No 60
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.38 E-value=3.1e-12 Score=102.56 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=76.5
Q ss_pred eEeccc--ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccce
Q 024201 99 NVKLSD--YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPL 176 (271)
Q Consensus 99 ~v~Lsd--~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~ 176 (271)
...+.+ ..|+ ++||+|| ++||+.|+.+.|.|.++++++.+ ++.|+.|.+|...
T Consensus 10 ~~~~~~a~~~gk-~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~---------------------- 64 (142)
T cd02950 10 STPPEVALSNGK-PTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK---------------------- 64 (142)
T ss_pred cCCHHHHHhCCC-EEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc----------------------
Confidence 344443 3555 8999999 99999999999999999999875 4888888887411
Q ss_pred EEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 177 IADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 177 l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
...+++.|++. .+|+++|+|++|+++....+. ...+++.+.|+.+.
T Consensus 65 ----~~~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~----~~~~~l~~~l~~l~ 110 (142)
T cd02950 65 ----WLPEIDRYRVD------GIPHFVFLDREGNEEGQSIGL----QPKQVLAQNLDALV 110 (142)
T ss_pred ----cHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCC----CCHHHHHHHHHHHH
Confidence 12467889998 899999999999999987653 23566777777664
No 61
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.38 E-value=1.1e-12 Score=111.91 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=98.1
Q ss_pred CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHhc-Cc--EEEEEeCCCHHHHHHHH
Q 024201 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKL-NT--EILGVSTDSVFSHLAWV 160 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp-~C~~~l~~L~~~~~~~~~~-gv--~vv~VS~d~~~~~~~~~ 160 (271)
=+|+|. +.+|+.++-.||+|| ++||+|. .++|| .|+.|+..|.+..++++++ |+ .-|+|++|+..+..+-+
T Consensus 120 GpF~L~---d~~Gk~~te~df~Gk-w~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~ 194 (280)
T KOG2792|consen 120 GPFSLV---DHDGKRVTEKDFLGK-WSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVV 194 (280)
T ss_pred CceEEE---ecCCCeecccccccc-eEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHH
Confidence 469997 888999999999999 9999998 89999 8999999999999999865 33 35789998644433333
Q ss_pred HHhhhcCCCCCcccceEEcCChHHHHHhCCccCC------CC---ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 161 QTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD------QG---IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~------~g---~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
.++-+.+...-+.++-..+.-..+++.|.|++.. +. -+.=.+||||++|..+..+-.+ .+.+++.+.
T Consensus 195 ~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN----~~~~~~~~~ 270 (280)
T KOG2792|consen 195 AEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN----YDADELADS 270 (280)
T ss_pred HHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc----CCHHHHHHH
Confidence 3333333322233333334447889999998653 11 1455689999999999875323 455666655
Q ss_pred HH
Q 024201 232 LQ 233 (271)
Q Consensus 232 l~ 233 (271)
|.
T Consensus 271 I~ 272 (280)
T KOG2792|consen 271 IL 272 (280)
T ss_pred HH
Confidence 43
No 62
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.3e-12 Score=101.14 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=91.7
Q ss_pred CCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-------- 152 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-------- 152 (271)
-..+.+|+.. +.+|+.|+|+.|+|| |||+...|+.|.....+..+|..++++|+++|++|+++.+|.
T Consensus 11 ~~siydf~~~---d~~G~~v~l~~yrGk--V~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~ 85 (171)
T KOG1651|consen 11 KGSIYDFSAK---DLDGEYVSLSQYRGK--VVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGS 85 (171)
T ss_pred hcceeeeEEe---cCCCCCccHHHhCCe--EEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCC
Confidence 3467899998 777889999999999 566666699999999999999999999999999999999863
Q ss_pred HHHHHHHHHHhhhcCCCCCcccceEEcC--Ch-HHHHHhCCccCCC------C-ccceEEEEEcCCCcEEEEEec
Q 024201 153 VFSHLAWVQTDRKSGGLGDLKYPLIADI--TK-SISKSYGVLIPDQ------G-IALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~f~~l~D~--~~-~~~~~ygv~~~~~------g-~~~P~~~lID~~G~V~~~~~~ 217 (271)
..++..+.+.. .+..|+++... ++ .....|....... + .+..+.||||+||+|+.++-.
T Consensus 86 n~Ei~~f~~~r------~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 86 NEEILNFVKVR------YGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred cHHHHHHHHhc------cCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 34555565522 25677777533 21 1122222222111 1 167899999999999999743
No 63
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.34 E-value=7.4e-12 Score=100.22 Aligned_cols=107 Identities=23% Similarity=0.298 Sum_probs=84.4
Q ss_pred CCCceeEecc-cccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc--CcEEEEEeCCCH-HHHHHHHHHhhhcCCC
Q 024201 94 DQEFINVKLS-DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSV-FSHLAWVQTDRKSGGL 169 (271)
Q Consensus 94 ~~~g~~v~Ls-d~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~--gv~vv~VS~d~~-~~~~~~~~~~~~~~~~ 169 (271)
+.+|..+-.+ .+.|| .+.++|- +.|||+|+.-.|.|.++|+++++. .++||.||.|.. +++..+.+.+
T Consensus 19 ~~~~~~~~~~~~l~gK-vV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~------ 90 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGK-VVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH------ 90 (157)
T ss_pred ccCCccchHhHhhCCc-EEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc------
Confidence 5666677776 68887 5555555 999999999999999999999875 399999999864 4556666665
Q ss_pred CCcccceEE---cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 170 GDLKYPLIA---DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 170 ~~~~f~~l~---D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
...|..+. +...++.+.|++. .+|...++.+||+++...
T Consensus 91 -~~~W~~iPf~d~~~~~l~~ky~v~------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 -HGDWLAIPFGDDLIQKLSEKYEVK------GIPALVILKPDGTVVTED 132 (157)
T ss_pred -CCCeEEecCCCHHHHHHHHhcccC------cCceeEEecCCCCEehHh
Confidence 34555554 3348889999999 899999999999998874
No 64
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.33 E-value=6.8e-12 Score=110.99 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=87.1
Q ss_pred CCCCeEEeeecC--CCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHH
Q 024201 83 TAPDFAAEAVFD--QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWV 160 (271)
Q Consensus 83 ~~Pdf~l~~~~~--~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~ 160 (271)
+.+.+......+ ...+...+++++|+ ++||+|| ++||++|+.+.|.|+++++++ |+.|++|++|....
T Consensus 140 P~~~~a~~~~~~~~~~~~~~~l~~l~~k-~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----- 209 (271)
T TIGR02740 140 PVSTLALDAHDTTAKKQKDRVMKDLAKK-SGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----- 209 (271)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCC-eEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-----
Confidence 455555543322 23345788999998 9999999 899999999999999999887 69999999986321
Q ss_pred HHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 161 QTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE-GVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~-G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..|+.. +.+..+++.||+. .+|++||+|++ |+|..+..+. -..+++.+.+..+
T Consensus 210 -----------~~fp~~-~~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~----~s~~eL~~~i~~~ 263 (271)
T TIGR02740 210 -----------PGFPNA-RPDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGV----MSADELVDRILLA 263 (271)
T ss_pred -----------ccCCcc-cCCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 124444 4456789999998 89999999996 5554444332 2456666665533
No 65
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.32 E-value=2.7e-11 Score=91.72 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=68.6
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
++.+|+ ++||.|| ++||++|+.+.|.|.++++++ .++.++.|+.|.... ..
T Consensus 11 ~~~~~k-~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~-------------------------~~ 61 (103)
T cd02985 11 KKAKGR-LVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDS-------------------------TM 61 (103)
T ss_pred HHcCCC-EEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChH-------------------------HH
Confidence 334566 9999999 999999999999999999998 478888898875211 13
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
++++.|++. .+|+++++ +||+++....+ ...+++.+.+
T Consensus 62 ~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~~ 99 (103)
T cd02985 62 ELCRREKII------EVPHFLFY-KDGEKIHEEEG-----IGPDELIGDV 99 (103)
T ss_pred HHHHHcCCC------cCCEEEEE-eCCeEEEEEeC-----CCHHHHHHHH
Confidence 677889998 89986666 89999988754 3345555554
No 66
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.19 E-value=2.7e-10 Score=87.42 Aligned_cols=88 Identities=14% Similarity=0.227 Sum_probs=69.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|+ ++||.|| ++||+.|+...|.+.++.+++++.++.++.|.+|. +..++
T Consensus 23 ~~~-~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----------------------------~~~l~ 72 (111)
T cd02963 23 FKK-PYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----------------------------ERRLA 72 (111)
T ss_pred CCC-eEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----------------------------cHHHH
Confidence 556 9999999 99999999999999999999987678887776652 24678
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+.||+. .+|+++++ ++|+++....+. ...+++.+.|+.
T Consensus 73 ~~~~V~------~~Pt~~i~-~~g~~~~~~~G~----~~~~~l~~~i~~ 110 (111)
T cd02963 73 RKLGAH------SVPAIVGI-INGQVTFYHDSS----FTKQHVVDFVRK 110 (111)
T ss_pred HHcCCc------cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHhc
Confidence 899998 89999999 599987775432 345666666554
No 67
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.19 E-value=2.5e-10 Score=86.18 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=66.4
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ ++||+|| ++||++|+...|.|.++++++++..+.++.|..|. .++++
T Consensus 17 ~~-~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~-----------------------------~~~~~ 65 (102)
T cd02948 17 KG-LTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT-----------------------------IDTLK 65 (102)
T ss_pred CC-eEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC-----------------------------HHHHH
Confidence 55 8999999 99999999999999999999875556666665552 24668
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+|++. ..|+++++ ++|+++.+..+ .+.+++++.|+.
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G-----~~~~~~~~~i~~ 101 (102)
T cd02948 66 RYRGK------CEPTFLFY-KNGELVAVIRG-----ANAPLLNKTITE 101 (102)
T ss_pred HcCCC------cCcEEEEE-ECCEEEEEEec-----CChHHHHHHHhh
Confidence 89999 88976666 79999988654 355777777764
No 68
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.18 E-value=1.7e-10 Score=86.93 Aligned_cols=85 Identities=16% Similarity=0.272 Sum_probs=64.5
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
++++|+ ++||.|| ++||++|+...|.|.+++++++ ++.++.|..+. ...
T Consensus 14 ~~~~g~-~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~---------------------------~~~ 62 (100)
T cd02999 14 AFNRED-YTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS---------------------------IKP 62 (100)
T ss_pred HhcCCC-EEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC---------------------------CCH
Confidence 457888 8999999 9999999999999999999986 57777774331 124
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
.+++.|++. ..|++++++ +| .+..+.+. .+.+++.+
T Consensus 63 ~l~~~~~V~------~~PT~~lf~-~g-~~~~~~G~----~~~~~l~~ 98 (100)
T cd02999 63 SLLSRYGVV------GFPTILLFN-ST-PRVRYNGT----RTLDSLAA 98 (100)
T ss_pred HHHHhcCCe------ecCEEEEEc-CC-ceeEecCC----CCHHHHHh
Confidence 788999999 899999996 55 44554332 44555544
No 69
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.18 E-value=1.2e-10 Score=90.97 Aligned_cols=101 Identities=17% Similarity=0.094 Sum_probs=72.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHH---HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFS---DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~---~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+++||+|| ++||++|+...+.+. ++.+.++ +++.++.|++|.......+ ........+++
T Consensus 15 k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~---------------~~~~~~~~~l~ 77 (125)
T cd02951 15 KPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDF---------------DGEALSEKELA 77 (125)
T ss_pred CcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeecc---------------CCCCccHHHHH
Confidence 48999999 999999999988875 4555555 3788888988753322211 11112457899
Q ss_pred HHhCCccCCCCccceEEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKE-GVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~-G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
+.|++. .+|+++++|++ |+++....+. ...+++.+.|+.+.
T Consensus 78 ~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~----~~~~~~~~~l~~~~ 119 (125)
T cd02951 78 RKYRVR------FTPTVIFLDPEGGKEIARLPGY----LPPDEFLAYLEYVQ 119 (125)
T ss_pred HHcCCc------cccEEEEEcCCCCceeEEecCC----CCHHHHHHHHHHHH
Confidence 999998 89999999999 8999886553 23456666666543
No 70
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.16 E-value=5.8e-10 Score=85.67 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=71.8
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++||++|+...|.|.++.+++.+. +.++-|.+|. ..++++.
T Consensus 14 ~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~----------------------------~~~la~~ 63 (114)
T cd02954 14 EKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE----------------------------VPDFNKM 63 (114)
T ss_pred CCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC----------------------------CHHHHHH
Confidence 348999999 999999999999999999998632 5666666653 4679999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCC------CCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG------RSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~------~~~~e~l~~l~~l 235 (271)
|++. .+|+++++ +||+++.+..+..+.. .+-+++++.+..+
T Consensus 64 ~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 64 YELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred cCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 9999 89999988 7999999987644422 3567777777644
No 71
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.10 E-value=1e-09 Score=81.50 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=65.2
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+|+ ++||+|| ++||++|+...|.+.++++.+.+ ++.++.|..+. ..+++
T Consensus 11 ~~~-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~ 59 (96)
T cd02956 11 TQV-PVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA----------------------------QPQIA 59 (96)
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC----------------------------CHHHH
Confidence 355 8999999 99999999999999999998864 46666665542 35788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
+.|++. ..|++++++ +|+++....+. .+.+++.+.|
T Consensus 60 ~~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~l 95 (96)
T cd02956 60 QQFGVQ------ALPTVYLFA-AGQPVDGFQGA----QPEEQLRQML 95 (96)
T ss_pred HHcCCC------CCCEEEEEe-CCEEeeeecCC----CCHHHHHHHh
Confidence 899998 899999996 99988775442 3345554443
No 72
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.07 E-value=4.1e-10 Score=85.95 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHH---HHHhcCcEEEEEeCCCHHHH-HHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYT---EFEKLNTEILGVSTDSVFSH-LAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~---~~~~~gv~vv~VS~d~~~~~-~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
|+ ++||+|| ..|||+|+...+.+.+..+ .++ .++.++.+..+..... .+|.+.. +.. .+.....
T Consensus 5 ~k-~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~ 72 (112)
T PF13098_consen 5 GK-PIVVVFT-DPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFD-------GQK--NVRLSNK 72 (112)
T ss_dssp SS-EEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHT-------CHS--SCHHHHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccc-------cch--hhhHHHH
Confidence 45 8999999 8999999988887776443 332 3688888888775533 4455543 111 1122346
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
++++.||+. .+|+++++|+||+++.+..|- .+.+++++.|
T Consensus 73 ~l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~----~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVN------GTPTIVFLDKDGKIVYRIPGY----LSPEELLKML 112 (112)
T ss_dssp HHHHHTT--------SSSEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred HHHHHcCCC------ccCEEEEEcCCCCEEEEecCC----CCHHHHHhhC
Confidence 899999999 899999999999999886543 2345665543
No 73
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.03 E-value=1.5e-09 Score=81.93 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
|+ ++||+|| ++||++|+...+.+ .++.+.+++ ++.++.|.++.... ...+
T Consensus 11 ~k-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~------------------------~~~~ 63 (104)
T cd02953 11 GK-PVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP------------------------EITA 63 (104)
T ss_pred CC-eEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH------------------------HHHH
Confidence 44 8999999 99999999998877 567777765 78888887653110 1246
Q ss_pred HHHHhCCccCCCCccceEEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDK-EGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~-~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
++++|++. .+|+++++++ +|+++.+..+. .+.+++.+.|
T Consensus 64 ~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~----~~~~~l~~~l 103 (104)
T cd02953 64 LLKRFGVF------GPPTYLFYGPGGEPEPLRLPGF----LTADEFLEAL 103 (104)
T ss_pred HHHHcCCC------CCCEEEEECCCCCCCCcccccc----cCHHHHHHHh
Confidence 78889998 8999999998 89988875443 3455555544
No 74
>PRK09381 trxA thioredoxin; Provisional
Probab=99.01 E-value=2.8e-09 Score=81.06 Aligned_cols=86 Identities=14% Similarity=0.300 Sum_probs=66.5
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++|||+|+...|.+.++++++.+ ++.++.|..|. ...+++.
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 70 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------NPGTAPK 70 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC----------------------------ChhHHHh
Confidence 448999999 89999999999999999999875 47777776653 2346788
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|++. ..|+++++ ++|+++....+. ...+++...|+.
T Consensus 71 ~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~ 106 (109)
T PRK09381 71 YGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA 106 (109)
T ss_pred CCCC------cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHH
Confidence 9998 89999888 699999886543 234555555543
No 75
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.96 E-value=5.1e-09 Score=79.10 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=62.2
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
+.+++++|.|| ++||++|+...|.|.++++++++.+ +.+..+..+. ..+
T Consensus 13 ~~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----------------------------~~~ 63 (104)
T cd03000 13 RKEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----------------------------YSS 63 (104)
T ss_pred ccCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----------------------------CHh
Confidence 34448999999 9999999999999999999997654 4444444331 246
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+++.|++. .+|++++++ +|.+ ..+.+ ....+++.+.++.
T Consensus 64 ~~~~~~I~------~~Pt~~l~~-~~~~-~~~~G----~~~~~~l~~~~~~ 102 (104)
T cd03000 64 IASEFGVR------GYPTIKLLK-GDLA-YNYRG----PRTKDDIVEFANR 102 (104)
T ss_pred HHhhcCCc------cccEEEEEc-CCCc-eeecC----CCCHHHHHHHHHh
Confidence 78899998 899999994 5543 33322 2345666666553
No 76
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.96 E-value=8e-09 Score=88.29 Aligned_cols=140 Identities=21% Similarity=0.311 Sum_probs=100.9
Q ss_pred CCCCCCCCCeEEeeecCCCcee-Eecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFIN-VKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD---- 151 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~-v~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d---- 151 (271)
..+|..+||..+.++++. . .++.|| +|+++.||+|..+| ||+-+..+..++++.++|.+. ++++.|-+.
T Consensus 73 a~~G~~APns~vv~l~g~---~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp 147 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQ---RSCRILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP 147 (237)
T ss_pred eeCCCCCCCCceEeeCCC---cceeHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence 568999999999866444 5 899998 77779999999777 999999999999999999862 456555321
Q ss_pred -----------------CHHHHHHHHHHhhhcCCCCCcccceEEcC-ChHHHHHhCCccCCCCccceEEEEEcCCCcEEE
Q 024201 152 -----------------SVFSHLAWVQTDRKSGGLGDLKYPLIADI-TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 152 -----------------~~~~~~~~~~~~~~~~~~~~~~f~~l~D~-~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~ 213 (271)
+.++-..-++...+. ...+|++.|. ++...++||.. .. +.||| +||+|+|
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~----~~~~pi~vD~mdN~~~~~YgA~------Pe-RlyIi-~~gkv~Y 215 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEE----FPQCPIVVDTMDNNFNKAYGAL------PE-RLYII-QDGKVVY 215 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHhh----CCCCCEEEEccCCHHHHHhCCC------cc-eEEEE-ECCEEEE
Confidence 111111122222211 3578888877 68999999998 33 35677 4999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHH
Q 024201 214 STINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 214 ~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.- +..+.+=+.+|+-+.|+.+
T Consensus 216 ~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 216 KG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred eC-CCCCCcCCHHHHHHHHHhc
Confidence 83 4555666789988888754
No 77
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.94 E-value=9.6e-09 Score=76.96 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=62.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
+|+ +||.|| ++||++|+...|.+.+++++++..++.+..|..+. +..++
T Consensus 16 ~~~--~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~~~ 64 (101)
T cd02994 16 EGE--WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----------------------------EPGLS 64 (101)
T ss_pred CCC--EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----------------------------CHhHH
Confidence 454 689999 99999999999999999988765567766665432 34578
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.|++. ..|+++++ ++|++ ..+.+ ....+++.+.++
T Consensus 65 ~~~~i~------~~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~ 100 (101)
T cd02994 65 GRFFVT------ALPTIYHA-KDGVF-RRYQG----PRDKEDLISFIE 100 (101)
T ss_pred HHcCCc------ccCEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence 899998 89999887 88986 34333 235566665554
No 78
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.94 E-value=2e-08 Score=80.06 Aligned_cols=108 Identities=9% Similarity=0.109 Sum_probs=77.2
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+.+++||.|| ++||++|+...|.|.++.+++++. +.|+-|.+|. ..+++.
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe----------------------------~~dla~ 71 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE----------------------------VPDFNT 71 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC----------------------------CHHHHH
Confidence 4458999999 999999999999999999998632 5556676653 467889
Q ss_pred HhCCccCCCCccceEEEEEcCCCc-EEEEEeccCC----CCCCHHHHHHHHHHHHHhhhCC--CcccCCCC
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGV-IQHSTINNLA----IGRSVDETLRTLQALQYVQENP--DEVCPAGW 250 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~-V~~~~~~~~~----~~~~~~e~l~~l~~l~~~~~~~--~~~~p~~~ 250 (271)
.|++. ..|+++++=++|+ .+....++.+ .....+++++.++.+..-+.+. -+.||.++
T Consensus 72 ~y~I~------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~ 136 (142)
T PLN00410 72 MYELY------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDY 136 (142)
T ss_pred HcCcc------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCcc
Confidence 99998 6777775558998 5555444221 2356788889888776554332 34556655
No 79
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-08 Score=77.83 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=68.0
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++.+|++|+ ++||++|+...|.+.++..+|.+ +.++-|.+|. ..++++.
T Consensus 21 ~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde----------------------------~~~~~~~ 69 (106)
T KOG0907|consen 21 DKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE----------------------------LEEVAKE 69 (106)
T ss_pred CCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc----------------------------CHhHHHh
Confidence 348899998 99999999999999999999984 8888888874 2578899
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
|++. .+|+++++ ++|+.+...++. +.+++.+.+.
T Consensus 70 ~~V~------~~PTf~f~-k~g~~~~~~vGa-----~~~~l~~~i~ 103 (106)
T KOG0907|consen 70 FNVK------AMPTFVFY-KGGEEVDEVVGA-----NKAELEKKIA 103 (106)
T ss_pred cCce------EeeEEEEE-ECCEEEEEEecC-----CHHHHHHHHH
Confidence 9999 89999999 899999997653 4445554443
No 80
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=8.7e-09 Score=81.97 Aligned_cols=86 Identities=13% Similarity=0.222 Sum_probs=67.2
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
..+|||.|| +.||.+|+...|.|.++..+|.. .+++.-|.+|. ..+++..
T Consensus 61 ~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~----------------------------~~ela~~ 110 (150)
T KOG0910|consen 61 DVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE----------------------------HPELAED 110 (150)
T ss_pred CCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc----------------------------ccchHhh
Confidence 459999999 99999999999999999999853 36666665553 4678999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|+|. ..|+++++ +||..+...++. .+.+.+...|+.
T Consensus 111 Y~I~------avPtvlvf-knGe~~d~~vG~----~~~~~l~~~i~k 146 (150)
T KOG0910|consen 111 YEIS------AVPTVLVF-KNGEKVDRFVGA----VPKEQLRSLIKK 146 (150)
T ss_pred ccee------eeeEEEEE-ECCEEeeeeccc----CCHHHHHHHHHH
Confidence 9999 99999999 799999886653 233444444443
No 81
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.92 E-value=1.9e-08 Score=76.94 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=71.0
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|. ..++++.
T Consensus 14 ~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe----------------------------v~dva~~ 63 (114)
T cd02986 14 EKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK----------------------------VPVYTQY 63 (114)
T ss_pred CCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc----------------------------cHHHHHh
Confidence 349999999 999999999999999999999632 6777777763 3578999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCC------CCHHHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG------RSVDETLRTLQAL 235 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~------~~~~e~l~~l~~l 235 (271)
|++. ..|+++++ ++|+-....++..+.. .+-+++++.++.+
T Consensus 64 y~I~------amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 64 FDIS------YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred cCce------eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 9998 89999988 7899888877644322 3457777777643
No 82
>PRK10996 thioredoxin 2; Provisional
Probab=98.91 E-value=2.1e-08 Score=80.00 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=65.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++|+|| ++||++|+...+.|.++++++.+ ++.++.|..+ .+.++++.|
T Consensus 53 k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~----------------------------~~~~l~~~~ 102 (139)
T PRK10996 53 LPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTE----------------------------AERELSARF 102 (139)
T ss_pred CeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCC----------------------------CCHHHHHhc
Confidence 48999999 99999999999999999988764 4677666543 235788999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++. .+|+++++ ++|+++....+. ...+++.+.|+.
T Consensus 103 ~V~------~~Ptlii~-~~G~~v~~~~G~----~~~e~l~~~l~~ 137 (139)
T PRK10996 103 RIR------SIPTIMIF-KNGQVVDMLNGA----VPKAPFDSWLNE 137 (139)
T ss_pred CCC------ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHH
Confidence 998 89998877 599999886543 345566666654
No 83
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.90 E-value=1.1e-08 Score=77.58 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=57.3
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ ++||.|| ++||++|+...|.+.++++++.. .+.++.|..|.. .+.++++
T Consensus 18 ~~-~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------~~~~~~~ 68 (109)
T cd03002 18 NY-TTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------KNKPLCG 68 (109)
T ss_pred CC-eEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------ccHHHHH
Confidence 44 7999999 99999999999999999998864 578888877741 1357888
Q ss_pred HhCCccCCCCccceEEEEEcCCCc
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
.|++. ..|+++++++++.
T Consensus 69 ~~~i~------~~Pt~~~~~~~~~ 86 (109)
T cd03002 69 KYGVQ------GFPTLKVFRPPKK 86 (109)
T ss_pred HcCCC------cCCEEEEEeCCCc
Confidence 99999 8999999987773
No 84
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.90 E-value=8.7e-09 Score=77.01 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=58.3
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEK--LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~--~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
+++|.|| ++||++|+...|.+.++++++++ .++.++.|..+. +..+++.
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~~ 68 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----------------------------HRELCSE 68 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----------------------------ChhhHhh
Confidence 5899999 99999999999999999999975 346666665432 2467888
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
|++. ..|+++++ ++|+++..+.+.
T Consensus 69 ~~v~------~~Pt~~~~-~~g~~~~~~~G~ 92 (102)
T cd03005 69 FQVR------GYPTLLLF-KDGEKVDKYKGT 92 (102)
T ss_pred cCCC------cCCEEEEE-eCCCeeeEeeCC
Confidence 9998 89999999 688877765543
No 85
>PHA02278 thioredoxin-like protein
Probab=98.89 E-value=1.3e-08 Score=77.00 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=60.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||++|+...|.|.++.+++.. .+.++-|.+|... . | ..++++.|
T Consensus 15 ~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~-----------------~------d-~~~l~~~~ 68 (103)
T PHA02278 15 KDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAED-----------------V------D-REKAVKLF 68 (103)
T ss_pred CcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccc-----------------c------c-cHHHHHHC
Confidence 38999999 99999999999999999877532 3667778777410 0 1 35689999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. .+|+++++ +||+++.+..+
T Consensus 69 ~I~------~iPT~i~f-k~G~~v~~~~G 90 (103)
T PHA02278 69 DIM------STPVLIGY-KDGQLVKKYED 90 (103)
T ss_pred CCc------cccEEEEE-ECCEEEEEEeC
Confidence 999 89999888 68999998755
No 86
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.88 E-value=1.5e-08 Score=77.35 Aligned_cols=87 Identities=11% Similarity=0.216 Sum_probs=64.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.|+ +++|.|| ++||++|+...|.+.++++++++.++.+..|..|.. +..++
T Consensus 20 ~~k-~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---------------------------~~~~~ 70 (109)
T cd02993 20 RNQ-STLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---------------------------QREFA 70 (109)
T ss_pred cCC-CEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---------------------------chhhH
Confidence 355 8999999 999999999999999999999876788888877640 12244
Q ss_pred H-HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 186 K-SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 186 ~-~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
+ .|++. ..|++++++++++....+.++ .++.+.++.
T Consensus 71 ~~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~ 107 (109)
T cd02993 71 KEELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLM 107 (109)
T ss_pred HhhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHh
Confidence 4 48888 899999998887755553221 246666554
No 87
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.88 E-value=2.7e-08 Score=74.17 Aligned_cols=72 Identities=10% Similarity=0.241 Sum_probs=58.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++++|| ++||+.|+...+.+.++.+++.+ ++.++.|..|. +.++++.|
T Consensus 14 ~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~----------------------------~~~l~~~~ 63 (97)
T cd02949 14 RLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE----------------------------DQEIAEAA 63 (97)
T ss_pred CeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHHHC
Confidence 48999999 89999999999999999988864 56666666542 34678889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. .+|+.+|++ +|+++....+
T Consensus 64 ~v~------~vPt~~i~~-~g~~v~~~~g 85 (97)
T cd02949 64 GIM------GTPTVQFFK-DKELVKEISG 85 (97)
T ss_pred CCe------eccEEEEEE-CCeEEEEEeC
Confidence 998 899999995 8999887644
No 88
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.85 E-value=2.3e-08 Score=80.93 Aligned_cols=79 Identities=9% Similarity=0.152 Sum_probs=60.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| ++||++|+...|.+.++.+++.+.++.++.|.+|.. .++++.|
T Consensus 48 ~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----------------------------~~la~~~ 98 (152)
T cd02962 48 VTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----------------------------PNVAEKF 98 (152)
T ss_pred CEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----------------------------HHHHHHc
Confidence 38999999 999999999999999999998766789998887651 2455556
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++.....--.+|+++++ ++|+.+.+..+
T Consensus 99 ~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 99 RVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred CceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 65510000048988888 59999998765
No 89
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.85 E-value=2.2e-08 Score=75.08 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=58.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||.|| ++||+.|+...|.+.++.++++. .+.+..|.+|. +..++
T Consensus 17 ~~~-~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~----------------------------~~~~~ 65 (101)
T cd03003 17 SGE-IWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD----------------------------DRMLC 65 (101)
T ss_pred CCC-eEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc----------------------------cHHHH
Confidence 344 8999999 99999999999999999999874 36777777653 24678
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
+.|++. ..|+++++ ++|+.+..+
T Consensus 66 ~~~~v~------~~Pt~~~~-~~g~~~~~~ 88 (101)
T cd03003 66 RSQGVN------SYPSLYVF-PSGMNPEKY 88 (101)
T ss_pred HHcCCC------ccCEEEEE-cCCCCcccC
Confidence 889998 89999888 789876554
No 90
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.84 E-value=2.6e-08 Score=75.80 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------HHHH
Q 024201 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--------VFSH 156 (271)
Q Consensus 85 Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--------~~~~ 156 (271)
.+|++. +.+|+.++|++|+|| ++|+...++.|+.-. ++..|++++++|+++|++|+++.+|. .+++
T Consensus 2 Ydf~~~---~~~G~~v~l~~y~Gk--v~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei 75 (108)
T PF00255_consen 2 YDFSAK---DIDGKPVSLSKYKGK--VLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEI 75 (108)
T ss_dssp GGSEEE---BTTSSEEEGGGGTTS--EEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHH
T ss_pred cceeee---CCCCCEECHHHcCCC--EEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHH
Confidence 467777 677789999999999 455555599999999 99999999999999999999998864 3344
Q ss_pred HHHHHHhhhcCCCCCcccceEE
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
+.+.... .+.+|++..
T Consensus 76 ~~~~~~~------~~~~F~vf~ 91 (108)
T PF00255_consen 76 KEFCKEK------FGVTFPVFE 91 (108)
T ss_dssp HHHHCHC------HT-SSEEBS
T ss_pred HHHHHhc------cCCcccceE
Confidence 5555541 155676654
No 91
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.83 E-value=2.6e-08 Score=76.66 Aligned_cols=84 Identities=4% Similarity=-0.003 Sum_probs=62.4
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.+++++||.|| ++||++|+...|.+.++.+++++ .+.++.|.+|. +..++
T Consensus 27 ~~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~----------------------------~~~l~ 76 (113)
T cd03006 27 TDAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWW----------------------------PQGKC 76 (113)
T ss_pred cCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------ChHHH
Confidence 44558999999 99999999999999999999974 36667676653 23455
Q ss_pred -HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 186 -KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 186 -~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
+.|++. ..|+..|+ ++|+....+.+ .+..++++.
T Consensus 77 ~~~~~I~------~~PTl~lf-~~g~~~~~y~G----~~~~~~i~~ 111 (113)
T cd03006 77 RKQKHFF------YFPVIHLY-YRSRGPIEYKG----PMRAPYMEK 111 (113)
T ss_pred HHhcCCc------ccCEEEEE-ECCccceEEeC----CCCHHHHHh
Confidence 578988 89999888 78887655433 234455443
No 92
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.82 E-value=4e-08 Score=73.94 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=58.7
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| ++||+.|+...|.+.++.++++. ++.+..|..+. +.++++.|
T Consensus 20 ~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~ 69 (104)
T cd03004 20 EPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK----------------------------YESLCQQA 69 (104)
T ss_pred CeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc----------------------------hHHHHHHc
Confidence 38999999 99999999999999999999853 46676666542 34678889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. ..|++++++++|+.+..+.+
T Consensus 70 ~i~------~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 70 NIR------AYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred CCC------cccEEEEEcCCCCCceEccC
Confidence 998 89999999766587777544
No 93
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.80 E-value=5.3e-08 Score=72.86 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=57.6
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
++ +++|.|| ++||+.|+...+.+.++.+++++. .+.++.|..+. +....+.
T Consensus 17 ~~-~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~ 68 (104)
T cd02997 17 EK-HVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--------------------------PEHDALK 68 (104)
T ss_pred CC-CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--------------------------CccHHHH
Confidence 44 8999999 999999999999999999998753 35555555442 1245788
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
+.||+. ..|+++++ ++|+++....+
T Consensus 69 ~~~~i~------~~Pt~~~~-~~g~~~~~~~g 93 (104)
T cd02997 69 EEYNVK------GFPTFKYF-ENGKFVEKYEG 93 (104)
T ss_pred HhCCCc------cccEEEEE-eCCCeeEEeCC
Confidence 999998 78986655 68998776543
No 94
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.80 E-value=6.4e-08 Score=71.71 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=57.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||+.|+...+.|.++.+++ ..++.++.|..+ ...++.+.|
T Consensus 15 ~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~----------------------------~~~~~~~~~ 64 (97)
T cd02984 15 KLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE----------------------------ELPEISEKF 64 (97)
T ss_pred CEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc----------------------------cCHHHHHhc
Confidence 48999999 999999999999999999887 335666666432 135788999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. ..|+++++ ++|+++....+
T Consensus 65 ~i~------~~Pt~~~~-~~g~~~~~~~g 86 (97)
T cd02984 65 EIT------AVPTFVFF-RNGTIVDRVSG 86 (97)
T ss_pred CCc------cccEEEEE-ECCEEEEEEeC
Confidence 998 89998888 58999888644
No 95
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.79 E-value=2.1e-08 Score=77.74 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=56.1
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
+...+| ++||+|| ++||++|+...+.+.+..+... .+..++.|.+|... .
T Consensus 15 A~~~~k-pVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~---------------------------~ 64 (117)
T cd02959 15 AKDSGK-PLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDE---------------------------E 64 (117)
T ss_pred HHHcCC-cEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCC---------------------------C
Confidence 334566 8999999 9999999999999988766543 34566767665311 0
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
...+.|++. |..+|+++++|++|+++...+.
T Consensus 65 ~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 65 PKDEEFSPD----GGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred chhhhcccC----CCccceEEEECCCCCCchhhcc
Confidence 112245554 1138999999999999886543
No 96
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.79 E-value=5e-08 Score=74.11 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-----CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-----NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-----gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
+++||+|| ++||++|+...|.+.++++++++. .+.+..|.. |.+.+
T Consensus 19 ~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~----------------------------d~~~~ 69 (108)
T cd02996 19 ELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC----------------------------DKESD 69 (108)
T ss_pred CEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC----------------------------CCCHH
Confidence 48999999 999999999999999999888642 133333433 34567
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
++++||+. ..|+++++ ++|++....+.+ .++.+++.+
T Consensus 70 l~~~~~v~------~~Ptl~~~-~~g~~~~~~~~g---~~~~~~l~~ 106 (108)
T cd02996 70 IADRYRIN------KYPTLKLF-RNGMMMKREYRG---QRSVEALAE 106 (108)
T ss_pred HHHhCCCC------cCCEEEEE-eCCcCcceecCC---CCCHHHHHh
Confidence 89999999 89999999 789854332221 345666554
No 97
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.78 E-value=6.6e-08 Score=71.94 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=64.1
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC-cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN-TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g-v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+++ +++|.|| ++||+.|+...+.+.++.+.++..+ +.++.|..+ .+..+
T Consensus 12 ~~~-~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------------------------~~~~~ 61 (102)
T TIGR01126 12 SNK-DVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----------------------------AEKDL 61 (102)
T ss_pred cCC-cEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----------------------------chHHH
Confidence 455 8999999 8999999999999999998887553 555544432 23578
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.+.|++. ..|+++++++++. +..+.+. ...+++...|++
T Consensus 62 ~~~~~i~------~~P~~~~~~~~~~-~~~~~g~----~~~~~l~~~i~~ 100 (102)
T TIGR01126 62 ASRFGVS------GFPTIKFFPKGKK-PVDYEGG----RDLEAIVEFVNE 100 (102)
T ss_pred HHhCCCC------cCCEEEEecCCCc-ceeecCC----CCHHHHHHHHHh
Confidence 8899998 8999999998876 4443332 345666655543
No 98
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.77 E-value=1.3e-07 Score=70.38 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=68.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| +.||+.|....|.|.++.+++.+ ++.++-|..+. +..+++.|
T Consensus 18 ~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~~~ 67 (103)
T PF00085_consen 18 KPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----------------------------NKELCKKY 67 (103)
T ss_dssp SEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------SHHHHHHT
T ss_pred CCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc----------------------------cchhhhcc
Confidence 48999999 89999999999999999999987 78887776652 35789999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
++. ..|+++++ ++|+......+. .+.+++.+.|+
T Consensus 68 ~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~ 101 (103)
T PF00085_consen 68 GVK------SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIE 101 (103)
T ss_dssp TCS------SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHH
T ss_pred CCC------CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHH
Confidence 999 89999998 578888765443 45677777765
No 99
>PTZ00051 thioredoxin; Provisional
Probab=98.74 E-value=8.3e-08 Score=71.28 Aligned_cols=71 Identities=14% Similarity=0.323 Sum_probs=57.4
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| ++||+.|+...+.+.++++++. ++.++.|..+. ...+++.|
T Consensus 19 ~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~~~~~~ 67 (98)
T PTZ00051 19 ELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE----------------------------LSEVAEKE 67 (98)
T ss_pred CeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------hHHHHHHC
Confidence 48999999 9999999999999999988764 57777665432 24688999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. ..|+++++ ++|+++....+
T Consensus 68 ~v~------~~Pt~~~~-~~g~~~~~~~G 89 (98)
T PTZ00051 68 NIT------SMPTFKVF-KNGSVVDTLLG 89 (98)
T ss_pred CCc------eeeEEEEE-eCCeEEEEEeC
Confidence 998 89987666 79999988765
No 100
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.73 E-value=1.6e-07 Score=69.51 Aligned_cols=85 Identities=15% Similarity=0.300 Sum_probs=64.9
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++|+|| .+||+.|+...+.|.++.+++.+ ++.++.|..+. +.++.++|
T Consensus 15 ~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~ 64 (101)
T TIGR01068 15 KPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE----------------------------NPDIAAKY 64 (101)
T ss_pred CcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHHc
Confidence 37999999 89999999999999999988763 47777776542 24677889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++. ..|+.+++ ++|+++....+. .+.+++.+.|+.
T Consensus 65 ~v~------~~P~~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~ 99 (101)
T TIGR01068 65 GIR------SIPTLLLF-KNGKEVDRSVGA----LPKAALKQLINK 99 (101)
T ss_pred CCC------cCCEEEEE-eCCcEeeeecCC----CCHHHHHHHHHh
Confidence 998 89999999 689887765433 245566666553
No 101
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.73 E-value=9.7e-08 Score=74.53 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=57.4
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++.+||+|+ ++|||+|+...|.|.++.++ .++.+.-|.+|..... ...+. +.-.++.+.
T Consensus 23 ~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~-~~~~~----------------~~~~~~~~~ 81 (122)
T TIGR01295 23 KETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSF-EMSSL----------------NDLTAFRSR 81 (122)
T ss_pred CCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCc-CcccH----------------HHHHHHHHH
Confidence 336888999 89999999999999999887 3577888888742100 00000 000344555
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
|++...- ..+|+++++ ++|+++....+.
T Consensus 82 ~~i~~~i--~~~PT~v~~-k~Gk~v~~~~G~ 109 (122)
T TIGR01295 82 FGIPTSF--MGTPTFVHI-TDGKQVSVRCGS 109 (122)
T ss_pred cCCcccC--CCCCEEEEE-eCCeEEEEEeCC
Confidence 5443110 158999988 799999987654
No 102
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.71 E-value=1.7e-07 Score=72.92 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=65.4
Q ss_pred CCcEEEEEEecCCCCCC--hH--HHHHHHHHHHHHH-HhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 107 GKKYVILFFYPLDFTFV--CP--TEITAFSDRYTEF-EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~--C~--~~l~~L~~~~~~~-~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
.+.++|++|| +.||++ |+ ...|.|.++..++ ++.++.|+-|.+|. +
T Consensus 26 ~~~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~----------------------------~ 76 (120)
T cd03065 26 YDVLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK----------------------------D 76 (120)
T ss_pred CCceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC----------------------------C
Confidence 3447777888 899987 99 6677777777665 44567777776653 4
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.++++.|||. .+|+.+|+ +||+++. +.+. +..+++.+.|+.+
T Consensus 77 ~~La~~~~I~------~iPTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~ 118 (120)
T cd03065 77 AKVAKKLGLD------EEDSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL 118 (120)
T ss_pred HHHHHHcCCc------cccEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence 6899999999 89999999 6999876 4332 4567777777755
No 103
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.70 E-value=1.9e-07 Score=71.91 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=61.1
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||+|| +.||+.|+...|.|.++.+++. ++.++-|..+. ..++++.|
T Consensus 23 ~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~----------------------------~~~l~~~~ 71 (113)
T cd02989 23 ERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK----------------------------APFLVEKL 71 (113)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc----------------------------CHHHHHHC
Confidence 37999999 9999999999999999998875 57776665543 35688999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCC
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI 221 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~ 221 (271)
++. .+|+.+++ ++|+++.+..+....
T Consensus 72 ~v~------~vPt~l~f-k~G~~v~~~~g~~~~ 97 (113)
T cd02989 72 NIK------VLPTVILF-KNGKTVDRIVGFEEL 97 (113)
T ss_pred CCc------cCCEEEEE-ECCEEEEEEECcccc
Confidence 999 89999888 699999887664443
No 104
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.69 E-value=1.6e-07 Score=72.25 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=51.3
Q ss_pred ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 105 YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 105 ~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+..++.++++|| ++||++|+...+.|.++.+++ ..+.++-|..|. +.++
T Consensus 19 l~~~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~----------------------------~~~l 67 (113)
T cd02975 19 MKNPVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDE----------------------------DKEK 67 (113)
T ss_pred hCCCeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCc----------------------------CHHH
Confidence 334445777777 899999999999999998776 247777666553 2468
Q ss_pred HHHhCCccCCCCccceEEEEEcCC
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKE 208 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~ 208 (271)
++.|++. ..|+++|.+.+
T Consensus 68 ~~~~~v~------~vPt~~i~~~g 85 (113)
T cd02975 68 AEKYGVE------RVPTTIFLQDG 85 (113)
T ss_pred HHHcCCC------cCCEEEEEeCC
Confidence 8899999 89999999753
No 105
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.65 E-value=1.4e-07 Score=70.55 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=58.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
+++||.|| ++||+.|+...+.+.++.++++. .++.++.|..+.. ...+++.
T Consensus 19 ~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~~ 70 (105)
T cd02998 19 KDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---------------------------NKDLAKK 70 (105)
T ss_pred CcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------chhhHHh
Confidence 37999999 99999999999999999999873 3566666665431 3578889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
|++. ..|++++++++|+....+
T Consensus 71 ~~i~------~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 71 YGVS------GFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred CCCC------CcCEEEEEeCCCCCcccc
Confidence 9998 899999998877665543
No 106
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.64 E-value=1.7e-07 Score=72.02 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=57.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+++||.|| +.||++|+...|.|.++.+++. ++.++-|..+. . ++++.|
T Consensus 25 ~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~----------------------------~-~l~~~~ 72 (113)
T cd02957 25 TRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK----------------------------A-FLVNYL 72 (113)
T ss_pred CEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh----------------------------h-HHHHhc
Confidence 48999999 9999999999999999998875 56665554432 2 678889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
++. .+|+.+++ ++|+++....+.
T Consensus 73 ~i~------~~Pt~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 73 DIK------VLPTLLVY-KNGELIDNIVGF 95 (113)
T ss_pred CCC------cCCEEEEE-ECCEEEEEEecH
Confidence 998 89988777 799999987663
No 107
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.63 E-value=2.5e-07 Score=70.65 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=58.8
Q ss_pred EEEEEEecCCC--CCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 110 YVILFFYPLDF--TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 110 ~vvL~F~~~t~--Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++||.|| +.| ||.|....|.|.++.+++.++ +.++-|..|. +.+++..
T Consensus 29 ~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~----------------------------~~~la~~ 78 (111)
T cd02965 29 DLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD----------------------------EQALAAR 78 (111)
T ss_pred CEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC----------------------------CHHHHHH
Confidence 6889999 896 999999999999999998742 5555555543 4589999
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
|+|. .+|+++++ +||+++....+
T Consensus 79 f~V~------sIPTli~f-kdGk~v~~~~G 101 (111)
T cd02965 79 FGVL------RTPALLFF-RDGRYVGVLAG 101 (111)
T ss_pred cCCC------cCCEEEEE-ECCEEEEEEeC
Confidence 9999 89999888 79999998755
No 108
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.63 E-value=1.9e-07 Score=68.72 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=61.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHH-hcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++||+|| ..||+.|+...+.+.++.+.++ ..++.++.|..+. +..+.+.|
T Consensus 17 ~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~~~~ 67 (101)
T cd02961 17 DVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----------------------------NNDLCSEY 67 (101)
T ss_pred cEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----------------------------hHHHHHhC
Confidence 8999999 8999999999999999998885 3456666665432 35788889
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
++. ..|++++++++|+....+.+. .+.+++++
T Consensus 68 ~i~------~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~ 99 (101)
T cd02961 68 GVR------GYPTIKLFPNGSKEPVKYEGP----RTLESLVE 99 (101)
T ss_pred CCC------CCCEEEEEcCCCcccccCCCC----cCHHHHHh
Confidence 998 899999999887555554322 34555554
No 109
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.62 E-value=3.4e-07 Score=70.49 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=52.3
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc-C-cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-N-TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~-g-v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+++||.|| ++||++|+...+.+.++.+++++. + +.+..|.++. +...++++
T Consensus 20 ~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------------------------~~~~~~~~ 72 (114)
T cd02992 20 SAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------------------------EENVALCR 72 (114)
T ss_pred CeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--------------------------hhhHHHHH
Confidence 48999999 999999999999999999988643 2 4554454432 12357888
Q ss_pred HhCCccCCCCccceEEEEEcCCCc
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
.|++. ..|+++++. +|.
T Consensus 73 ~~~i~------~~Pt~~lf~-~~~ 89 (114)
T cd02992 73 DFGVT------GYPTLRYFP-PFS 89 (114)
T ss_pred hCCCC------CCCEEEEEC-CCC
Confidence 99998 899999995 555
No 110
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.61 E-value=3.9e-07 Score=78.36 Aligned_cols=85 Identities=12% Similarity=0.190 Sum_probs=63.5
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+++|.|| ++||++|+...|.+.++++++++ .+.+..|..+ .+.++++.|+
T Consensus 54 ~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~----------------------------~~~~l~~~~~ 103 (224)
T PTZ00443 54 PWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDAT----------------------------RALNLAKRFA 103 (224)
T ss_pred CEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCc----------------------------ccHHHHHHcC
Confidence 7999999 99999999999999999999874 3444444332 2357889999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+. ..|++++++ +|+++....+ ....+++.+.+++.
T Consensus 104 I~------~~PTl~~f~-~G~~v~~~~G----~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 104 IK------GYPTLLLFD-KGKMYQYEGG----DRSTEKLAAFALGD 138 (224)
T ss_pred CC------cCCEEEEEE-CCEEEEeeCC----CCCHHHHHHHHHHH
Confidence 99 899999997 7887765322 24567776665543
No 111
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.60 E-value=1.5e-06 Score=67.99 Aligned_cols=101 Identities=9% Similarity=-0.073 Sum_probs=61.0
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHH-HH--HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITA-FS--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~-L~--~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+| +++|+|+ ++||+.|+..-+. +. ++.+.+. +++.+|-|..+...+.. +.+ ..
T Consensus 14 ~~K-pVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~---~~~-----------------~~ 70 (124)
T cd02955 14 EDK-PIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVD---KIY-----------------MN 70 (124)
T ss_pred cCC-eEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHH---HHH-----------------HH
Confidence 455 8999988 9999999977552 22 3444443 35555555554321111 111 01
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC----CCCCCHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL----AIGRSVDETLRTLQAL 235 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~----~~~~~~~e~l~~l~~l 235 (271)
.....||+. ..|+++++|++|++++...+-. ..+....++++.++.+
T Consensus 71 ~~~~~~~~~------G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 71 AAQAMTGQG------GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred HHHHhcCCC------CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 222356777 7899999999999999864321 2334566777766643
No 112
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.57 E-value=2e-07 Score=72.31 Aligned_cols=80 Identities=9% Similarity=0.100 Sum_probs=61.0
Q ss_pred cCCcEEEEEEecC-------CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 106 IGKKYVILFFYPL-------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 106 ~gkk~vvL~F~~~-------t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
+|+ ++||.|| + +||++|+...|.|.++.+++++ ++.++-|.+|... ...
T Consensus 20 ~~~-~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~---------------------~w~ 75 (119)
T cd02952 20 EGK-PIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP---------------------YWR 75 (119)
T ss_pred CCC-eEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc---------------------ccc
Confidence 456 8999999 8 9999999999999999999873 5888888887521 122
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
|.+.++.+.|++. . .+|++++++..++++.-
T Consensus 76 d~~~~~~~~~~I~-~----~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 76 DPNNPFRTDPKLT-T----GVPTLLRWKTPQRLVED 106 (119)
T ss_pred CcchhhHhccCcc-c----CCCEEEEEcCCceecch
Confidence 3456788888885 1 58999999655555443
No 113
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.55 E-value=2.9e-07 Score=89.63 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=68.6
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
+..+|| +++|+|| ++||+.|+...+.. .++.++++ ++.++-|.++... +
T Consensus 470 a~~~gK-~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~ 521 (571)
T PRK00293 470 AKGKGK-PVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------A 521 (571)
T ss_pred HHhcCC-cEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------h
Confidence 334566 8999999 99999999876653 45666664 5777777765411 1
Q ss_pred CChHHHHHhCCccCCCCccceEEEEEcCCCcEEE--EEeccCCCCCCHHHHHHHHHHHH
Q 024201 180 ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQH--STINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 180 ~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~--~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+.++.++|++. ..|+++++|+||+++. +..+. .+.+++++.|++++
T Consensus 522 ~~~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G~----~~~~~f~~~L~~~~ 570 (571)
T PRK00293 522 EDVALLKHYNVL------GLPTILFFDAQGQEIPDARVTGF----MDAAAFAAHLRQLQ 570 (571)
T ss_pred hhHHHHHHcCCC------CCCEEEEECCCCCCcccccccCC----CCHHHHHHHHHHhc
Confidence 235788899998 8999999999999853 33332 35677888777653
No 114
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.54 E-value=9.9e-07 Score=65.83 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=59.6
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++++||.|| ++||+.|+...|.+.++.+++.. .+.++.|..+. +.++.+.
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~----------------------------~~~~~~~ 67 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV----------------------------HQSLAQQ 67 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc----------------------------hHHHHHH
Confidence 436999999 89999999999999999988864 46666665432 3568889
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRT 231 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~ 231 (271)
|++. ..|++++++.+.+....+.+ +.+.+++.+.
T Consensus 68 ~~i~------~~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~ 101 (103)
T cd03001 68 YGVR------GFPTIKVFGAGKNSPQDYQG----GRTAKAIVSA 101 (103)
T ss_pred CCCC------ccCEEEEECCCCcceeecCC----CCCHHHHHHH
Confidence 9998 89999999644233322222 3455655543
No 115
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.53 E-value=1.3e-06 Score=62.83 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=56.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++|+|| +.||+.|....+.+.++.++ ..++.++.|..+. +.++.+.|
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------~~~~~~~~ 59 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------NPELAEEY 59 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------ChhHHHhc
Confidence 47899999 89999999999999998877 4578888777653 34567788
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++. ..|++++++ +|+++....+
T Consensus 60 ~v~------~~P~~~~~~-~g~~~~~~~g 81 (93)
T cd02947 60 GVR------SIPTFLFFK-NGKEVDRVVG 81 (93)
T ss_pred Ccc------cccEEEEEE-CCEEEEEEec
Confidence 888 889999884 7787777654
No 116
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.6e-07 Score=79.69 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=61.6
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++||+.|| +.||++|..-+|.|.++..+++. .+.+.-|++| ....++.+|
T Consensus 44 ~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D----------------------------~~p~vAaqf 93 (304)
T COG3118 44 VPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCD----------------------------AEPMVAAQF 93 (304)
T ss_pred CCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCC----------------------------cchhHHHHh
Confidence 49999999 99999999999999999999974 2555546555 346799999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
||. .+|++|++ +||+-+.-+.+.
T Consensus 94 giq------sIPtV~af-~dGqpVdgF~G~ 116 (304)
T COG3118 94 GVQ------SIPTVYAF-KDGQPVDGFQGA 116 (304)
T ss_pred CcC------cCCeEEEe-eCCcCccccCCC
Confidence 999 99999999 899999987554
No 117
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.50 E-value=8.2e-07 Score=83.84 Aligned_cols=93 Identities=8% Similarity=0.112 Sum_probs=68.9
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||.|| +.||++|+...|.|.++.++++++++.++.|.+|.. ......
T Consensus 370 ~~k-~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~--------------------------~~~~~~ 421 (463)
T TIGR00424 370 RKE-AWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD--------------------------QKEFAK 421 (463)
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC--------------------------ccHHHH
Confidence 444 8999999 999999999999999999999877788888887741 112334
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|+|. ..|+++++. +|....+.+. +..++++.++..+++|
T Consensus 422 ~~~~I~------~~PTii~Fk-~g~~~~~~Y~--~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 422 QELQLG------SFPTILFFP-KHSSRPIKYP--SEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHcCCC------ccceEEEEE-CCCCCceeCC--CCCCCHHHHHHHHHhh
Confidence 678998 899999995 4442222111 1247899998888766
No 118
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.49 E-value=6.2e-06 Score=69.36 Aligned_cols=157 Identities=17% Similarity=0.244 Sum_probs=108.6
Q ss_pred CCCCCCeEEeeecCCCceeEecccc-cCCcEEEEEEec-----CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYP-----LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~-~gkk~vvL~F~~-----~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
+..-.+..+. +.+| +++|.|+ .|+.-.||+-|. ...||.|...+..+.....-+..+++.+++||..+.+
T Consensus 43 v~v~~~Y~F~---g~~G-~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~ 118 (211)
T PF05988_consen 43 VEVDKDYVFD---GPDG-PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLE 118 (211)
T ss_pred ccCCCCeEEe---CCCC-cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHH
Confidence 4444567775 6666 4999986 555444555443 4679999999999988888899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCC-ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 155 SHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG-IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g-~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.+.+|.+.+ +..||.++..+..+...|++...+.+ ...=..|+-|. |+|.+.+.. ..+..+.+.....
T Consensus 119 ~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTyst---~~RG~e~l~~~~~ 187 (211)
T PF05988_consen 119 KIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTYST---YGRGGERLMPTWN 187 (211)
T ss_pred HHHHHHHhc-------CCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEeec---CCCCchhhhhHHH
Confidence 999999998 88999999998999999998654322 11123455543 666666432 3455566655554
Q ss_pred HHHHhhhCCCcccCCCCCC
Q 024201 234 ALQYVQENPDEVCPAGWKP 252 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~ 252 (271)
-|-.......+.-|.+|-.
T Consensus 188 lLDlTP~GR~E~~~~~W~r 206 (211)
T PF05988_consen 188 LLDLTPLGRQEDPPMDWWR 206 (211)
T ss_pred HHhcCCCCCCCCCCCCccc
Confidence 3333333323446777743
No 119
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.48 E-value=1.3e-06 Score=74.72 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=67.3
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.-.+.++.++ +.|++|+. +.|++|..+.|.|..+.+++ |+.|+.||+|... ...|+-..
T Consensus 112 ~~~l~~la~~-~gL~~F~~-~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~----------------~~~fp~~~ 170 (215)
T PF13728_consen 112 DKALKQLAQK-YGLFFFYR-SDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP----------------IPSFPNPR 170 (215)
T ss_pred HHHHHHHhhC-eEEEEEEc-CCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC----------------CcCCCCCC
Confidence 3345666766 89999995 56999999999999999988 8999999999621 11222222
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.+..+++.+|+. .+|++|||++++.....
T Consensus 171 -~~~g~~~~l~v~------~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 171 -PDPGQAKRLGVK------VTPALFLVNPNTKKWYP 199 (215)
T ss_pred -CCHHHHHHcCCC------cCCEEEEEECCCCeEEE
Confidence 267789999998 89999999999844443
No 120
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.47 E-value=7.5e-07 Score=77.86 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=75.0
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.-.+.++.++ +.|++||. .-||+|....|.|+.+.+++ |+.+++||+|... ...||-..
T Consensus 142 ~~~i~~la~~-~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~----------------~p~fp~~~ 200 (256)
T TIGR02739 142 EKAIQQLSQS-YGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL----------------IPGLPNSR 200 (256)
T ss_pred HHHHHHHHhc-eeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCcc
Confidence 3445666676 99999996 55999999999999999988 7999999999621 12233322
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCc-EEEEEeccCCCCCCHHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGV-IQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~-V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.+...++.+|+. .+|++|||+++.+ +.-+..|. -..+++++.+..
T Consensus 201 -~d~gqa~~l~v~------~~Pal~Lv~~~t~~~~pv~~G~----iS~deL~~Ri~~ 246 (256)
T TIGR02739 201 -SDSGQAQHLGVK------YFPALYLVNPKSQKMSPLAYGF----ISQDELKERILN 246 (256)
T ss_pred -CChHHHHhcCCc------cCceEEEEECCCCcEEEEeecc----CCHHHHHHHHHH
Confidence 356678999998 8999999999944 44443332 245666665543
No 121
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.44 E-value=4e-06 Score=59.90 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=55.8
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
.|..|| +.||++|+...+.|.++.++++. .+.++-|..+. +.+.++.||+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~~~v 51 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME----------------------------NPQKAMEYGI 51 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc----------------------------CHHHHHHcCC
Confidence 466788 89999999999999999998863 36777665542 2346678999
Q ss_pred ccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 191 LIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 191 ~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
. .+|++++ +|+++.. + ....+++.+.|+.
T Consensus 52 ~------~vPt~~~---~g~~~~~--G----~~~~~~l~~~l~~ 80 (82)
T TIGR00411 52 M------AVPAIVI---NGDVEFI--G----APTKEELVEAIKK 80 (82)
T ss_pred c------cCCEEEE---CCEEEEe--c----CCCHHHHHHHHHh
Confidence 8 8899875 6764322 2 1245666666654
No 122
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.43 E-value=1.7e-06 Score=71.79 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=57.9
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+|||+|| +.||++|....|.|.++..++. ++.++-|..+. . .++..|+
T Consensus 85 ~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~----------------------------~-~l~~~f~ 132 (175)
T cd02987 85 TVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA----------------------------T-GASDEFD 132 (175)
T ss_pred EEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc----------------------------h-hhHHhCC
Confidence 8999999 9999999999999999999885 57777666542 1 4677788
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
+. .+|+++|+ ++|+++...++.
T Consensus 133 v~------~vPTllly-k~G~~v~~~vG~ 154 (175)
T cd02987 133 TD------ALPALLVY-KGGELIGNFVRV 154 (175)
T ss_pred CC------CCCEEEEE-ECCEEEEEEech
Confidence 88 89998888 799999987664
No 123
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.39 E-value=1.5e-06 Score=75.62 Aligned_cols=102 Identities=15% Similarity=0.252 Sum_probs=74.3
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
.+.++.++ +.|++||. +.||+|....|.|+.+.+++ |+.|++||+|... ...||... .
T Consensus 137 ~i~~la~~-~GL~fFy~-s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~----------------~p~fp~~~-~ 194 (248)
T PRK13703 137 AIAKLAEH-YGLMFFYR-GQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI----------------NPLLPDSR-T 194 (248)
T ss_pred HHHHHHhc-ceEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCCc-c
Confidence 45667666 89999996 55999999999999999988 7999999999621 12333322 3
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCC-cEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEG-VIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G-~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+...++.+|+. .+|++|||+++. ++.-+..|. -..+++.+.+..
T Consensus 195 d~gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~----iS~deL~~Ri~~ 239 (248)
T PRK13703 195 DQGQAQRLGVK------YFPALMLVDPKSGSVRPLSYGF----ITQDDLAKRFLN 239 (248)
T ss_pred ChhHHHhcCCc------ccceEEEEECCCCcEEEEeecc----CCHHHHHHHHHH
Confidence 45566899998 899999999996 555554332 245667666553
No 124
>PLN02309 5'-adenylylsulfate reductase
Probab=98.38 E-value=2.7e-06 Score=80.26 Aligned_cols=92 Identities=12% Similarity=0.198 Sum_probs=68.3
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.++ ++||+|| +.||++|+...|.+.++.++|...++.|+.|..|. .+.+++
T Consensus 364 ~~k-~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~---------------------------~~~~la 414 (457)
T PLN02309 364 RKE-PWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG---------------------------DQKEFA 414 (457)
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC---------------------------cchHHH
Confidence 344 8999999 99999999999999999999987788888887763 112445
Q ss_pred H-HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 K-SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~-~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+ .|+|. ..|+++++.++.+ ..+.+. +..++++.++..+++|
T Consensus 415 ~~~~~I~------~~PTil~f~~g~~-~~v~Y~--~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 415 KQELQLG------SFPTILLFPKNSS-RPIKYP--SEKRDVDSLLSFVNSL 456 (457)
T ss_pred HhhCCCc------eeeEEEEEeCCCC-CeeecC--CCCcCHHHHHHHHHHh
Confidence 4 58998 8999999954433 222211 1247889999888876
No 125
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.35 E-value=2e-06 Score=64.14 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=48.7
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
+.++|+|| ++||+.|+...+.+.++.+++++ ..+.+..|..+. .++...
T Consensus 19 ~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-----------------------------~~~~~~ 68 (104)
T cd02995 19 KDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA-----------------------------NDVPSE 68 (104)
T ss_pred CcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc-----------------------------hhhhhh
Confidence 48999999 99999999999999999999875 345555555542 134455
Q ss_pred hCCccCCCCccceEEEEEcCCC
Q 024201 188 YGVLIPDQGIALRGLFIIDKEG 209 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G 209 (271)
+++. ..|+++++.+++
T Consensus 69 ~~~~------~~Pt~~~~~~~~ 84 (104)
T cd02995 69 FVVD------GFPTILFFPAGD 84 (104)
T ss_pred ccCC------CCCEEEEEcCCC
Confidence 6665 789999996544
No 126
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.28 E-value=7e-06 Score=70.24 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred cccCCcEEEEEEec--CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 104 DYIGKKYVILFFYP--LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 104 d~~gkk~vvL~F~~--~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
.+++. ..|+.|+. +.||++|+...|.+.++.+++. ++++..|.+|. |.+
T Consensus 16 ~~~~~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~--------------------------~~~ 66 (215)
T TIGR02187 16 ELKNP-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT--------------------------PED 66 (215)
T ss_pred hcCCC-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC--------------------------ccc
Confidence 34444 56667773 3999999999999999998884 46666666663 134
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEE-EEec
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQH-STIN 217 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~-~~~~ 217 (271)
.++++.|++. .+|++++++ +|+.+. ++.+
T Consensus 67 ~~l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G 96 (215)
T TIGR02187 67 KEEAEKYGVE------RVPTTIILE-EGKDGGIRYTG 96 (215)
T ss_pred HHHHHHcCCC------ccCEEEEEe-CCeeeEEEEee
Confidence 6899999999 899998885 687764 5444
No 127
>PTZ00062 glutaredoxin; Provisional
Probab=98.27 E-value=7.7e-06 Score=69.34 Aligned_cols=62 Identities=8% Similarity=-0.020 Sum_probs=51.9
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|++|| +.|||.|+...+.|.++.++|. ++.++-|..| |+
T Consensus 19 ~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d------------------------------------~~ 59 (204)
T PTZ00062 19 KLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA------------------------------------DA 59 (204)
T ss_pred cEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc------------------------------------cC
Confidence 5889999 9999999999999999999985 4666666422 88
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
|. .+|+++++ +||+++.+..+
T Consensus 60 V~------~vPtfv~~-~~g~~i~r~~G 80 (204)
T PTZ00062 60 NN------EYGVFEFY-QNSQLINSLEG 80 (204)
T ss_pred cc------cceEEEEE-ECCEEEeeeeC
Confidence 88 89999999 69999998654
No 128
>PTZ00102 disulphide isomerase; Provisional
Probab=98.27 E-value=3.6e-06 Score=80.07 Aligned_cols=89 Identities=9% Similarity=0.121 Sum_probs=64.7
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC-cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN-TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g-v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
|+ .+||+|| ++||+.|+...|.+.++.+++++.+ +.+.-|..+. +...+
T Consensus 375 ~k-~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~----------------------------~~~~~ 424 (477)
T PTZ00102 375 DK-DVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA----------------------------NETPL 424 (477)
T ss_pred CC-CEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC----------------------------Cccch
Confidence 45 8999999 9999999999999999998887643 4444454432 22346
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.|++. ..|+.++++++|++...+.+ ....+++.+.|+..
T Consensus 425 ~~~~v~------~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 425 EEFSWS------AFPTILFVKAGERTPIPYEG----ERTVEGFKEFVNKH 464 (477)
T ss_pred hcCCCc------ccCeEEEEECCCcceeEecC----cCCHHHHHHHHHHc
Confidence 678887 88999999988876544333 24667777777643
No 129
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.23 E-value=7e-06 Score=69.07 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=58.5
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++|||+|| ++||+.|+...+.|.++..+|. .+.|+-|..+. ....|
T Consensus 103 ~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~-------------------------------~~~~~ 148 (192)
T cd02988 103 TWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ-------------------------------CIPNY 148 (192)
T ss_pred CEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH-------------------------------hHhhC
Confidence 38999999 9999999999999999999985 57777776542 12457
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCC
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG 222 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~ 222 (271)
++. .+|+++|+ ++|+++...++....+
T Consensus 149 ~i~------~lPTlliy-k~G~~v~~ivG~~~~g 175 (192)
T cd02988 149 PDK------NLPTILVY-RNGDIVKQFIGLLEFG 175 (192)
T ss_pred CCC------CCCEEEEE-ECCEEEEEEeCchhhC
Confidence 777 78988888 8999999988754443
No 130
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.21 E-value=1.2e-05 Score=75.95 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=63.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
++++|.|| ++||+.|+...|.+.++++++++.+ +.++.|.++. +.++++
T Consensus 19 ~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l~~ 69 (462)
T TIGR01130 19 EFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE----------------------------EKDLAQ 69 (462)
T ss_pred CCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC----------------------------cHHHHH
Confidence 37899999 9999999999999999999988766 6666565432 357889
Q ss_pred HhCCccCCCCccceEEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVI-QHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V-~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.|++. ..|+++++ ++|+. +..+.+. .+.+++.+.++.
T Consensus 70 ~~~i~------~~Pt~~~~-~~g~~~~~~~~g~----~~~~~l~~~i~~ 107 (462)
T TIGR01130 70 KYGVS------GYPTLKIF-RNGEDSVSDYNGP----RDADGIVKYMKK 107 (462)
T ss_pred hCCCc------cccEEEEE-eCCccceeEecCC----CCHHHHHHHHHH
Confidence 99998 89988888 57776 4444332 345555555543
No 131
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.17 E-value=1.7e-05 Score=60.86 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCC----------------
Q 024201 131 FSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD---------------- 194 (271)
Q Consensus 131 L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~---------------- 194 (271)
|.+.++++++.||.+|+|+..+.+..++|.+.. .++++++.|++.++.+++|+....
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~ 74 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNI 74 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHH
Confidence 667788999999999999999987799999775 789999999999999999987421
Q ss_pred --------------CC--ccceEEEEEcCCCcEEEEEe
Q 024201 195 --------------QG--IALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 195 --------------~g--~~~P~~~lID~~G~V~~~~~ 216 (271)
.| ......||+|++|+|++.+.
T Consensus 75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 01 13467899999999999874
No 132
>PTZ00102 disulphide isomerase; Provisional
Probab=98.11 E-value=1.9e-05 Score=75.05 Aligned_cols=87 Identities=15% Similarity=0.269 Sum_probs=63.5
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
++ .++|.|| +.||++|+...|.+.++.+++++.+ +.+.-|.++ .+.++
T Consensus 49 ~~-~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~----------------------------~~~~l 98 (477)
T PTZ00102 49 NE-IVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT----------------------------EEMEL 98 (477)
T ss_pred CC-cEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC----------------------------CCHHH
Confidence 44 7999999 9999999999999999998887554 444444332 24678
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++.|++. ..|+.++++. |+.+ .+.+ .++.+++.+.++.+
T Consensus 99 ~~~~~i~------~~Pt~~~~~~-g~~~-~y~g----~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 99 AQEFGVR------GYPTIKFFNK-GNPV-NYSG----GRTADGIVSWIKKL 137 (477)
T ss_pred HHhcCCC------cccEEEEEEC-CceE-EecC----CCCHHHHHHHHHHh
Confidence 9999998 8999999975 4443 3222 35677777777654
No 133
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.08 E-value=0.0001 Score=56.51 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=60.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHH-HH--HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITA-FS--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~-L~--~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
++| +++|+|+ +.||+.|...... |. ++.+.+.+ ++.++.+..++++ ..
T Consensus 16 ~~K-~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e--------------------------~~ 66 (114)
T cd02958 16 EKK-WLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE--------------------------GQ 66 (114)
T ss_pred hCc-eEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc--------------------------HH
Confidence 455 8999999 8999999876543 21 22333332 4444444443211 23
Q ss_pred HHHHHhCCccCCCCccceEEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDK-EGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~-~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++++.|++. ..|+.++||+ +|+++....+. ...++++..|+..
T Consensus 67 ~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~----~~~~~f~~~L~~~ 110 (114)
T cd02958 67 RFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGN----ITPEDLLSQLIEF 110 (114)
T ss_pred HHHHHhCcc------CCCeEEEEeCccCcEeEEEcCC----CCHHHHHHHHHHH
Confidence 567778887 8999999999 89999986554 3567888777754
No 134
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.06 E-value=2.6e-05 Score=55.48 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=44.3
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
.|.|| ++|||.|....+.+.++.+++. +.+-.+.+|+ .+.+..||+.
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~~-----------------------------~~~a~~~~v~ 48 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELG---IDAEFEKVTD-----------------------------MNEILEAGVT 48 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeCC-----------------------------HHHHHHcCCC
Confidence 37788 7999999999999999999874 3333344442 1124568888
Q ss_pred cCCCCccceEEEEEcCCCcEEEE
Q 024201 192 IPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.+|+++| ||+++..
T Consensus 49 ------~vPti~i---~G~~~~~ 62 (76)
T TIGR00412 49 ------ATPGVAV---DGELVIM 62 (76)
T ss_pred ------cCCEEEE---CCEEEEE
Confidence 8998877 8988843
No 135
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.04 E-value=6.2e-05 Score=59.18 Aligned_cols=94 Identities=7% Similarity=0.089 Sum_probs=54.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHH--HHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSD--RYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~--~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
.+| +++|+|+ +.||++|+..-..+-+ -..++-+++ +|.|.++.... +. +.. .
T Consensus 22 ~~K-pvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~--Fv~V~l~~d~t-----d~--------~~~------~--- 75 (130)
T cd02960 22 SNK-PLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQED--FIMLNLVHETT-----DK--------NLS------P--- 75 (130)
T ss_pred CCC-eEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhC--eEEEEEEeccC-----CC--------CcC------c---
Confidence 455 8999988 8999999977665422 122222234 45444442100 00 111 0
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC------CCCCHHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA------IGRSVDETLRTLQALQ 236 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~------~~~~~~e~l~~l~~l~ 236 (271)
.| ..+|+++++|++|+++....+... ...+++++++-++..+
T Consensus 76 ----~g-------~~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 76 ----DG-------QYVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred ----cC-------cccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHHHH
Confidence 12 158999999999999988654332 2245667776665443
No 136
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.04 E-value=2.9e-05 Score=50.96 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=47.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
|+.|| ..||+.|....+.+.++ +....++.++.++.+.......+ ...+++.
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~ 52 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE-------------------------LKRYGVG 52 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH-------------------------HHhCCCc
Confidence 46788 89999999999999998 55566899999999874433322 3445555
Q ss_pred cCCCCccceEEEEEcCC
Q 024201 192 IPDQGIALRGLFIIDKE 208 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~ 208 (271)
..|++++++.+
T Consensus 53 ------~~P~~~~~~~~ 63 (69)
T cd01659 53 ------GVPTLVVFGPG 63 (69)
T ss_pred ------cccEEEEEeCC
Confidence 68888888765
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.99 E-value=5.5e-05 Score=52.02 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=44.8
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
-|..|+ ++|||+|....+.|.++.++. .++++.-|..+. +.++++.||+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~----------------------------~~~l~~~~~i 50 (67)
T cd02973 2 NIEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAAE----------------------------FPDLADEYGV 50 (67)
T ss_pred EEEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEccc----------------------------CHhHHHHcCC
Confidence 366777 899999999988888886543 256666665432 2456778888
Q ss_pred ccCCCCccceEEEEEcCCCcEEEE
Q 024201 191 LIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 191 ~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
. .+|+++| +|++++.
T Consensus 51 ~------~vPti~i---~~~~~~~ 65 (67)
T cd02973 51 M------SVPAIVI---NGKVEFV 65 (67)
T ss_pred c------ccCEEEE---CCEEEEe
Confidence 7 7888654 4666654
No 138
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.96 E-value=0.0002 Score=57.61 Aligned_cols=144 Identities=12% Similarity=0.191 Sum_probs=84.5
Q ss_pred CCCCCCCCeEEeeec-------CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHH--HHhcCcEEEE-E
Q 024201 79 LVGNTAPDFAAEAVF-------DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE--FEKLNTEILG-V 148 (271)
Q Consensus 79 ~~G~~~Pdf~l~~~~-------~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~--~~~~gv~vv~-V 148 (271)
.+|+++|..++.+-. +-..+.++...+.|| |.|+++.+- -+--..+...|.+..++ |.....+..+ |
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GK--Vrviq~iAG-r~sake~N~~l~~aik~a~f~~d~yqtttIi 78 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGK--VRVIQHIAG-RSSAKEMNAPLIEAIKAAKFPHDKYQTTTII 78 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCC--EEEEEEecc-CCchhHhhHHHHHHHHHcCCCccceeEEEEE
Confidence 467778877765211 123457888899999 444444222 35555555555444332 5555677777 4
Q ss_pred eCCCH-HHHHHHHHHhhhcCCCCCcccc-eEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHH
Q 024201 149 STDSV-FSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVD 226 (271)
Q Consensus 149 S~d~~-~~~~~~~~~~~~~~~~~~~~f~-~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~ 226 (271)
+.|+. .-...|.+...+... ..++|. ++.|.++.+.++|++... .-..+|+|++|+|++..-+.+. ...++
T Consensus 79 N~dDAi~gt~~fVrss~e~~k-k~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~Ls-~~Ev~ 151 (160)
T PF09695_consen 79 NLDDAIWGTGGFVRSSAEDSK-KEFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGALS-PAEVQ 151 (160)
T ss_pred ecccccccchHHHHHHHHHhh-hhCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCCCC-HHHHH
Confidence 66532 111223333322221 135666 679999999999999842 3457899999999999755433 22345
Q ss_pred HHHHHH
Q 024201 227 ETLRTL 232 (271)
Q Consensus 227 e~l~~l 232 (271)
++++.|
T Consensus 152 qVi~Ll 157 (160)
T PF09695_consen 152 QVIALL 157 (160)
T ss_pred HHHHHH
Confidence 555544
No 139
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.96 E-value=5.9e-05 Score=55.43 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=51.7
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.++++. .-|..|+ +.||++|+...+.+.++.+++. ++.+.-|..+. ..
T Consensus 8 ~~l~~p-v~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~----------------------------~~ 55 (89)
T cd03026 8 RRLNGP-INFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL----------------------------FQ 55 (89)
T ss_pred HhcCCC-EEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh----------------------------CH
Confidence 456655 5566666 8999999998888888887654 46665554432 25
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
++++.||+. .+|++++ ||++++.
T Consensus 56 e~a~~~~V~------~vPt~vi---dG~~~~~ 78 (89)
T cd03026 56 DEVEERGIM------SVPAIFL---NGELFGF 78 (89)
T ss_pred HHHHHcCCc------cCCEEEE---CCEEEEe
Confidence 788899999 8999864 6888775
No 140
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=97.90 E-value=8.4e-06 Score=50.62 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=27.7
Q ss_pred HHHHhhhCCCcccCCCCCCCCCCC---CCCch-hhHHHhh
Q 024201 234 ALQYVQENPDEVCPAGWKPGDKSM---KPDPK-LSKEYFA 269 (271)
Q Consensus 234 ~l~~~~~~~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~ 269 (271)
+||+..++ ++.||++|+||++.| +.+.. ..|.|+.
T Consensus 1 ALQ~~d~~-~v~tPanW~pGd~~ivpp~~s~~~a~k~~~~ 39 (40)
T PF10417_consen 1 ALQFTDKH-GVATPANWKPGDDVIVPPPVSQEEAKKRFPE 39 (40)
T ss_dssp HHHHHHHH-SSBBCTTTCTTSGEBE-TTSSTTHHHHHHHC
T ss_pred Cceehhhh-CcccCcCCCCCCCeEcCCCCCHHHHHHHccC
Confidence 57888888 899999999999999 55533 6666653
No 141
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.81 E-value=0.00014 Score=62.17 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC---cEEEEEeCCCHHHHH
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN---TEILGVSTDSVFSHL 157 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g---v~vv~VS~d~~~~~~ 157 (271)
=...|.+++. + ...+.+.+|+ ++||-+. -.+|..|..++..|..+..+|...| |.++.|+........
T Consensus 7 C~~~p~W~i~---~----~~pm~~~~G~-VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~ 77 (238)
T PF04592_consen 7 CKPPPPWKIG---G----QDPMLNSLGH-VTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRL 77 (238)
T ss_pred CCCCCCceEC---C----chHhhhcCCc-EEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhH
Confidence 3467888774 3 4577888998 7888888 4569999999999999999998876 556666654432222
Q ss_pred H--HHHHhhhcCCCCCcccceEE--cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 158 A--WVQTDRKSGGLGDLKYPLIA--DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 158 ~--~~~~~~~~~~~~~~~f~~l~--D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
. .++.. -...|++.- +.+..++..++-..++ +||+|+-|++.+...
T Consensus 78 ~~~~l~~r------~~~~ipVyqq~~~q~dvW~~L~G~kdD-------~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 78 KYWELKRR------VSEHIPVYQQDENQPDVWELLNGSKDD-------FLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHHHh------CCCCCceecCCccccCHHHHhCCCcCc-------EEEEeccCcEEEEec
Confidence 1 11111 133477775 3458899999887554 799999999999853
No 142
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.79 E-value=5.1e-05 Score=59.76 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=46.0
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+..+..+ ..+|+|. .+|||.|...+|.|.++.+... ++++=-|..|. ..+..+.+
T Consensus 36 l~~~~~~-~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~---~~el~~~~------------------ 90 (129)
T PF14595_consen 36 LKSIQKP-YNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE---NKELMDQY------------------ 90 (129)
T ss_dssp HHT--S--EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH---HHHHTTTT------------------
T ss_pred HHhcCCC-cEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC---ChhHHHHH------------------
Confidence 3344444 7788888 9999999999999999999864 55555555543 11111111
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
+. .|.. .+|.++++|++|+++.++.
T Consensus 91 --lt--~g~~------~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 91 --LT--NGGR------SIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp --TT---SS--------SSEEEEE-TT--EEEEEE
T ss_pred --Hh--CCCe------ecCEEEEEcCCCCEeEEEc
Confidence 11 3444 7999999999999999974
No 143
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00014 Score=59.84 Aligned_cols=133 Identities=11% Similarity=0.169 Sum_probs=90.8
Q ss_pred CCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcc
Q 024201 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK 173 (271)
Q Consensus 94 ~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~ 173 (271)
+..|+.|.+.++..+...+|.|.+--.|-.|+.+...|.++.+-++..|+.+|+|-..+......+.++- .+.
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~ 108 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFS 108 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Ccc
Confidence 5667799999997776788999988999999999999999988888899999998764333333333322 233
Q ss_pred cceEEcCChHHHHHhCCccC----------------------C----CCccceEEEEEcCCCcEEEEEeccCC-CCCCHH
Q 024201 174 YPLIADITKSISKSYGVLIP----------------------D----QGIALRGLFIIDKEGVIQHSTINNLA-IGRSVD 226 (271)
Q Consensus 174 f~~l~D~~~~~~~~ygv~~~----------------------~----~g~~~P~~~lID~~G~V~~~~~~~~~-~~~~~~ 226 (271)
-.++.|++..+.+.++.... . .+......++|.+.|+|.+.+..... ...+++
T Consensus 109 gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~ 188 (197)
T KOG4498|consen 109 GEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPID 188 (197)
T ss_pred eeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCHH
Confidence 35666776555544443321 0 12235678999888899998765322 223677
Q ss_pred HHHHHHH
Q 024201 227 ETLRTLQ 233 (271)
Q Consensus 227 e~l~~l~ 233 (271)
++++.+.
T Consensus 189 ~Vl~v~~ 195 (197)
T KOG4498|consen 189 SVLQVVG 195 (197)
T ss_pred HHHHHhh
Confidence 7777653
No 144
>PHA02125 thioredoxin-like protein
Probab=97.76 E-value=0.00041 Score=49.08 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=46.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCc
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~ 191 (271)
|+.|+ ++||++|+...|.|.++. +.++ .+| .|...++++.|++.
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~--~vd--------------------------~~~~~~l~~~~~v~ 45 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYV--DVD--------------------------TDEGVELTAKHHIR 45 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEE--eee--------------------------CCCCHHHHHHcCCc
Confidence 67888 999999998888775331 1111 111 23457899999999
Q ss_pred cCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 192 IPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 192 ~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.+|+++ +|+.+....+ ..++..++.+.|
T Consensus 46 ------~~PT~~----~g~~~~~~~G---~~~~~~~l~~~~ 73 (75)
T PHA02125 46 ------SLPTLV----NTSTLDRFTG---VPRNVAELKEKL 73 (75)
T ss_pred ------eeCeEE----CCEEEEEEeC---CCCcHHHHHHHh
Confidence 889865 5777665443 234455555544
No 145
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00015 Score=62.41 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=58.6
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
|+.--+| .+++.|. ++||.+|....|.++++..+|. |..++=|.+|. -
T Consensus 16 ls~ag~k-~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~----------------------------c 63 (288)
T KOG0908|consen 16 LSAAGGK-LVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE----------------------------C 63 (288)
T ss_pred hhccCce-EEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH----------------------------h
Confidence 3333344 9999999 9999999999999999999995 66777676653 2
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
...+..+||. .+|++++. .||+-+...
T Consensus 64 ~~taa~~gV~------amPTFiff-~ng~kid~~ 90 (288)
T KOG0908|consen 64 RGTAATNGVN------AMPTFIFF-RNGVKIDQI 90 (288)
T ss_pred hchhhhcCcc------cCceEEEE-ecCeEeeee
Confidence 3466778998 89998888 788877764
No 146
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.67 E-value=0.00015 Score=53.96 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
|+ ++++.|+ ..||+.|....+.|.++.++++++ +.++-|..|. ...+++
T Consensus 12 ~~-~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~----------------------------~~~~~~ 60 (103)
T cd02982 12 GK-PLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD----------------------------FGRHLE 60 (103)
T ss_pred CC-CEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh----------------------------hHHHHH
Confidence 55 7889998 899999999999999999999843 6666665543 134566
Q ss_pred HhCCccCCCCccceEEEEEcC
Q 024201 187 SYGVLIPDQGIALRGLFIIDK 207 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~ 207 (271)
.||+... ..|+.++++.
T Consensus 61 ~~~i~~~----~~P~~~~~~~ 77 (103)
T cd02982 61 YFGLKEE----DLPVIAIINL 77 (103)
T ss_pred HcCCChh----hCCEEEEEec
Confidence 6776521 4788888876
No 147
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.65 E-value=6.5e-05 Score=55.58 Aligned_cols=48 Identities=25% Similarity=0.446 Sum_probs=39.5
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
....+.++ ++++.|| +.||+.|....|.+.++.+++.. .+.++.|...
T Consensus 26 ~~~~~~~~-~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGK-PVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCc-eEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 33344466 8899999 99999999999999999999875 6788888775
No 148
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.64 E-value=0.00026 Score=66.80 Aligned_cols=85 Identities=9% Similarity=0.180 Sum_probs=60.2
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-c-CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-L-NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~-gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
+.+||+|| ++||++|....|.+.++.++++. . ++.++.|..+.. ++..
T Consensus 365 ~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-----------------------------~~~~ 414 (462)
T TIGR01130 365 KDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-----------------------------DVPP 414 (462)
T ss_pred CeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-----------------------------ccCC
Confidence 38999999 99999999999999999999986 2 577777766431 0112
Q ss_pred HhCCccCCCCccceEEEEEcCCCcEE-EEEeccCCCCCCHHHHHHHHHH
Q 024201 187 SYGVLIPDQGIALRGLFIIDKEGVIQ-HSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 187 ~ygv~~~~~g~~~P~~~lID~~G~V~-~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
|++. ..|+.+++++++++. ....+ ....+++++.|+.
T Consensus 415 -~~i~------~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~~l~~ 452 (462)
T TIGR01130 415 -FEVE------GFPTIKFVPAGKKSEPVPYDG----DRTLEDFSKFIAK 452 (462)
T ss_pred -CCcc------ccCEEEEEeCCCCcCceEecC----cCCHHHHHHHHHh
Confidence 6777 789999997666531 22212 3557777777653
No 149
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00028 Score=66.85 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=66.6
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
.+..++++-|| +.||.+|....|++.+...++++.|=.+.-.-+|- ..+.+++
T Consensus 40 ~~~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDa--------------------------t~~~~~~ 92 (493)
T KOG0190|consen 40 NGHEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA--------------------------TEESDLA 92 (493)
T ss_pred ccCceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec--------------------------chhhhhH
Confidence 34457889999 99999999999999999999987642222222221 1236889
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.+|++. ..|+.-|. +||+....+. -.+..+.++..|+.
T Consensus 93 ~~y~v~------gyPTlkiF-rnG~~~~~Y~----G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 93 SKYEVR------GYPTLKIF-RNGRSAQDYN----GPREADGIVKWLKK 130 (493)
T ss_pred hhhcCC------CCCeEEEE-ecCCcceecc----CcccHHHHHHHHHh
Confidence 999999 78888777 8999844332 24678888888764
No 150
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.50 E-value=0.0013 Score=56.23 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=49.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|+.|| ++||++|+...+.+.++..+.. .+.+.-|..+ ...++++.||
T Consensus 135 v~I~~F~-a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~----------------------------~~~~~~~~~~ 183 (215)
T TIGR02187 135 VRIEVFV-TPTCPYCPYAVLMAHKFALAND--KILGEMIEAN----------------------------ENPDLAEKYG 183 (215)
T ss_pred cEEEEEE-CCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC----------------------------CCHHHHHHhC
Confidence 4555578 9999999987777766665531 3444333222 3467888999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+. .+|+++|. ++|+. +.+ ....+++.+.|+
T Consensus 184 V~------~vPtl~i~-~~~~~---~~G----~~~~~~l~~~l~ 213 (215)
T TIGR02187 184 VM------SVPKIVIN-KGVEE---FVG----AYPEEQFLEYIL 213 (215)
T ss_pred Cc------cCCEEEEe-cCCEE---EEC----CCCHHHHHHHHH
Confidence 99 88998765 56763 222 123456666554
No 151
>smart00594 UAS UAS domain.
Probab=97.49 E-value=0.0016 Score=50.62 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=56.3
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHH-H--HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCCh
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAF-S--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L-~--~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (271)
.+| .++|+|+ +.||+.|....... . ++.+.+ ++++.++.+.+++.+ ..
T Consensus 26 ~~K-~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~e--------------------------g~ 76 (122)
T smart00594 26 QRR-LLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSE--------------------------GQ 76 (122)
T ss_pred hcC-CEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChh--------------------------HH
Confidence 455 8999999 89999998765542 1 122333 335555555544322 14
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCC-cEEEEEeccCCCCCCHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEG-VIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G-~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
+++..|++. ..|+.+|||++| ......+....-....++++..|
T Consensus 77 ~l~~~~~~~------~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 77 RVSQFYKLD------SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHhcCcC------CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 678888888 899999999997 21112222222234577777665
No 152
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.0025 Score=53.87 Aligned_cols=127 Identities=15% Similarity=0.297 Sum_probs=90.0
Q ss_pred eEecccccCCcEEEEE--Eec----CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCc
Q 024201 99 NVKLSDYIGKKYVILF--FYP----LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDL 172 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~--F~~----~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~ 172 (271)
+.+|.|+-+.+-.||+ |.. ...||.|......+.-...-+...+|.+++||--+.+++.++.+.+ +.
T Consensus 63 ~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm-------GW 135 (247)
T COG4312 63 KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM-------GW 135 (247)
T ss_pred chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc-------CC
Confidence 7899997554333333 221 3469999999999988888888889999999999999999999998 88
Q ss_pred ccceEEcCChHHHHHhCCccCCC----C---------------ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 173 KYPLIADITKSISKSYGVLIPDQ----G---------------IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 173 ~f~~l~D~~~~~~~~ygv~~~~~----g---------------~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.|+.++..+..+.+.|++.+.+. | .+.-..|.-+.+|+|-..+.. ..+..++++-...
T Consensus 136 ~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty~~---~~RG~e~~~~~~~ 212 (247)
T COG4312 136 QFPWVSSTDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTYSQ---YARGLEQLIGTWN 212 (247)
T ss_pred cceeEeccCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcccccccc---CCccccchhhHHH
Confidence 99999999999999998764431 1 011234555777777665422 2344555555544
Q ss_pred HH
Q 024201 234 AL 235 (271)
Q Consensus 234 ~l 235 (271)
-|
T Consensus 213 ~L 214 (247)
T COG4312 213 LL 214 (247)
T ss_pred Hh
Confidence 33
No 153
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.11 E-value=0.0047 Score=54.15 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=71.6
Q ss_pred CCCCCeEEeeecCCCceeEeccc-ccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHH-hc--CcEEEEEeCCCHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSD-YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE-KL--NTEILGVSTDSVFSHL 157 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd-~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~-~~--gv~vv~VS~d~~~~~~ 157 (271)
-.+|+|...++.+ +.+++.+ ++|| +.||..+...|--.|....-. ...++|. .. .+++|-|++.+.-- +
T Consensus 99 lyFP~l~g~tL~g---~~~~~~~~l~gk-vSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~-k 171 (252)
T PF05176_consen 99 LYFPNLQGKTLAG---NKVDTTDLLRGK-VSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWL-K 171 (252)
T ss_pred CcCCCCccccCCC---CCcccccccCCc-eEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHH-H
Confidence 3679999886644 4666654 5777 666555534444444332111 2233332 23 68999998875322 2
Q ss_pred HHHHH-----hhhcCCCC-CcccceEEcC--ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 158 AWVQT-----DRKSGGLG-DLKYPLIADI--TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 158 ~~~~~-----~~~~~~~~-~~~f~~l~D~--~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
.|+-. +++..... ...|-++.+. ..++-+.+|+... .+-++||||.+|+|++..-
T Consensus 172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~----~~GYvyLVD~~grIRWags 234 (252)
T PF05176_consen 172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS----YVGYVYLVDPNGRIRWAGS 234 (252)
T ss_pred HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC----CcCeEEEECCCCeEEeCcc
Confidence 33322 22222111 2233333333 4688899999865 4566999999999999953
No 154
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.06 E-value=0.0032 Score=45.14 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=32.3
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
.|| +++|+|+ +.||+.|+..-..+ .++.+.+. +++..+-|..+...
T Consensus 16 ~~k-pvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 16 EGK-PVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDED 64 (82)
T ss_dssp HTS-EEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHH
T ss_pred cCC-CEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCC
Confidence 455 8999998 99999999876665 22333233 57888888776544
No 155
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.03 E-value=0.0029 Score=48.96 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=76.1
Q ss_pred ecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
.|+++++++-+||+|-+..--+.-..++..|.+....+.++.+.++.|.-+...... ..+-...
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~----------------~~~~~~~ 65 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG----------------KPLSPED 65 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc----------------CcCCHHH
Confidence 467888886677777754444556677888888788899999988888554321110 1111122
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
...+.+.|++.. ...+.+||++||.+..++-.+ -+.+++.+.|++++
T Consensus 66 ~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p----~~~~~lf~~ID~MP 112 (118)
T PF13778_consen 66 IQALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEP----IDPEELFDTIDAMP 112 (118)
T ss_pred HHHHHHHhCCCC-----CceEEEEEeCCCcEEEecCCC----CCHHHHHHHHhCCc
Confidence 367888888772 346799999999999995332 36889999998775
No 156
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.58 E-value=0.035 Score=43.78 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=59.9
Q ss_pred ecccccCCcEEEEEEecCC--CCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 101 KLSDYIGKKYVILFFYPLD--FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 101 ~Lsd~~gkk~vvL~F~~~t--~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
+++++.+.....+.|+++. .+|-+....--|.++.++|.+..+.+.-|..|
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD--------------------------- 78 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE--------------------------- 78 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC---------------------------
Confidence 4555443323344454333 22333344445555666664323555555554
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.+.+++..|||. .+|+.+++ +||+++....+. .+.+++++.|+.+.
T Consensus 79 -~~~~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~----~~k~~l~~~I~~~L 124 (132)
T PRK11509 79 -QSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLV 124 (132)
T ss_pred -CCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCc----CCHHHHHHHHHHHh
Confidence 357899999999 89999888 899999987653 34577888877653
No 157
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.48 E-value=0.023 Score=43.83 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=56.6
Q ss_pred CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 107 gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+.+.+||.|+ ++| |.|.. .|...++.+++.... |.|--|..++.. + ..+.++
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------~-----------------~~~~~L 70 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYG------E-----------------KLNMEL 70 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccccc------c-----------------hhhHHH
Confidence 3457899999 966 56654 488888888885432 332235554310 0 023679
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEE-EEEeccCCCCCCHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQ-HSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~-~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
++.|||... ..|+..|+. +|... ...+ . +.++..+.|++.+..
T Consensus 71 ~~~y~I~~~----gyPTl~lF~-~g~~~~~~~Y-~-G~~r~~~~lv~~v~~ 114 (116)
T cd03007 71 GERYKLDKE----SYPVIYLFH-GGDFENPVPY-S-GADVTVDALQRFLKG 114 (116)
T ss_pred HHHhCCCcC----CCCEEEEEe-CCCcCCCccC-C-CCcccHHHHHHHHHh
Confidence 999999632 478888884 56411 1111 1 112788888887653
No 158
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.45 E-value=0.041 Score=37.52 Aligned_cols=33 Identities=3% Similarity=0.122 Sum_probs=23.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|..|+ ..|||.|....+.|.+ .|+.+.-+.++.
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 44566 8999999987665543 478877777664
No 159
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.38 E-value=0.034 Score=48.19 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=59.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE--eC---CC--HHH----------HHHHHHHhhhcCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV--ST---DS--VFS----------HLAWVQTDRKSGG 168 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V--S~---d~--~~~----------~~~~~~~~~~~~~ 168 (271)
.|+ .+|+.|. -..||+|+...+.+.++.+ .|+.|..+ .. .+ ... .++|.+.+.. ..
T Consensus 106 ~~k-~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~-~~ 178 (232)
T PRK10877 106 QEK-HVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKG-KD 178 (232)
T ss_pred CCC-EEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcC-CC
Confidence 456 6777777 6779999998888766533 46666543 22 11 111 1223222211 11
Q ss_pred CCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 169 LGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 169 ~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
..........+.+.++++.+|+. .+|++++ +||+++.- ....+++.+.|++.|
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~------gTPtiv~--~~G~~~~G-------~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQ------GTPAIVL--SNGTLVPG-------YQGPKEMKAFLDEHQ 231 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCc------cccEEEE--cCCeEeeC-------CCCHHHHHHHHHHcc
Confidence 10101111113347888999999 8998874 47887622 135677777766543
No 160
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.23 E-value=0.033 Score=39.32 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=37.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCc
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI 197 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~ 197 (271)
+.+||.|......+.++..++ |+++-.+... ...++ ..||+.
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~----------------------------~~~~~-~~ygv~------ 48 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIE----------------------------DFEEI-EKYGVM------ 48 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETT----------------------------THHHH-HHTT-S------
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEcc----------------------------CHHHH-HHcCCC------
Confidence 566999998888888777776 3444222111 11344 889999
Q ss_pred cceEEEEEcCCCcEEEE
Q 024201 198 ALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 198 ~~P~~~lID~~G~V~~~ 214 (271)
..|+. +| ||++++.
T Consensus 49 ~vPal-vI--ng~~~~~ 62 (76)
T PF13192_consen 49 SVPAL-VI--NGKVVFV 62 (76)
T ss_dssp SSSEE-EE--TTEEEEE
T ss_pred CCCEE-EE--CCEEEEE
Confidence 88988 66 5888876
No 161
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.23 E-value=0.019 Score=44.43 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=47.2
Q ss_pred cCCcEEEEEEecC------CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 106 IGKKYVILFFYPL------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 106 ~gkk~vvL~F~~~------t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
.|+ ++.|+|... +|||.|....|.+.+...... .+..+|-|.+.+. ..|.+
T Consensus 18 ~~~-~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r---~~Wkd------------------ 74 (119)
T PF06110_consen 18 SGK-PLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR---PEWKD------------------ 74 (119)
T ss_dssp TTS-EEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H---HHHC-------------------
T ss_pred CCC-eEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH---HHhCC------------------
Confidence 344 677777732 699999999999999888743 3788888877652 34533
Q ss_pred CChHHHH--HhCCccCCCCccceEEEEEcCCCc
Q 024201 180 ITKSISK--SYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 180 ~~~~~~~--~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
++..+-+ .+++. .+|+.+-.+..++
T Consensus 75 p~n~fR~~p~~~l~------~IPTLi~~~~~~r 101 (119)
T PF06110_consen 75 PNNPFRTDPDLKLK------GIPTLIRWETGER 101 (119)
T ss_dssp TTSHHHH--CC---------SSSEEEECTSS-E
T ss_pred CCCCceEcceeeee------ecceEEEECCCCc
Confidence 2333333 58888 8999999976655
No 162
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.22 E-value=0.066 Score=41.25 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=59.9
Q ss_pred cCCcEEEEEEecCC----CCCChHHHH--HHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEc
Q 024201 106 IGKKYVILFFYPLD----FTFVCPTEI--TAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (271)
Q Consensus 106 ~gkk~vvL~F~~~t----~Cp~C~~~l--~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (271)
.+| +++|+++ .. ||..|+..+ +.+.+..+ .++-+.+.+++..+
T Consensus 16 e~K-~llVylh-s~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~~e------------------------- 64 (116)
T cd02991 16 ELR-FLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAKPE------------------------- 64 (116)
T ss_pred hCC-EEEEEEe-CCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCChH-------------------------
Confidence 455 8999999 56 677886553 34444443 35656666665532
Q ss_pred CChHHHHHhCCccCCCCccceEEEEE---cCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 180 ITKSISKSYGVLIPDQGIALRGLFII---DKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 180 ~~~~~~~~ygv~~~~~g~~~P~~~lI---D~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..+++..+++. ..|...+| +.+.+|+.+..+. ...++++..|+.+
T Consensus 65 -g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G~----~~~~~ll~~L~~~ 112 (116)
T cd02991 65 -GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEGL----IQPEDLINRLTFI 112 (116)
T ss_pred -HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeCC----CCHHHHHHHHHHH
Confidence 15788889998 89999999 6666677775443 4678888888755
No 163
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.19 E-value=0.015 Score=51.01 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=53.2
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEe-----CCCHHHH----------HHHHHHhhhcCCCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVS-----TDSVFSH----------LAWVQTDRKSGGLG 170 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS-----~d~~~~~----------~~~~~~~~~~~~~~ 170 (271)
.++ .+|++|. -..||+|+.....+.++.+. .+|++.-|. .++.... ++| +.+.......
T Consensus 116 ~ak-~~I~vFt-Dp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~-~~~~~~~~~~ 189 (251)
T PRK11657 116 DAP-RIVYVFA-DPNCPYCKQFWQQARPWVDS---GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKAL-QEYEASGGKL 189 (251)
T ss_pred CCC-eEEEEEE-CCCChhHHHHHHHHHHHhhc---CceEEEEEeccccCcchHHHHHHHHhccCHHHHH-HHHHHhhhcc
Confidence 344 6777777 67799999988887765543 135543332 2222111 222 2221111100
Q ss_pred Ccccce--------EEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 171 DLKYPL--------IADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 171 ~~~f~~--------l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
+....- ..+.+.++++.+|+. .+|++|+.|.+|++..+
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~------GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGAN------ATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEEEe
Confidence 000100 011235577888988 89999999999987655
No 164
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.07 E-value=0.026 Score=50.25 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=62.9
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC--cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.|+|.|+ ++||+..+...|-+.+..+.++++- -.+|-=.+| +|....++..
T Consensus 15 lvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VD--------------------------cd~e~~ia~k 67 (375)
T KOG0912|consen 15 LVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVD--------------------------CDKEDDIADK 67 (375)
T ss_pred EEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcc--------------------------cchhhHHhhh
Confidence 7899999 9999999999999999998887542 122221222 3445678899
Q ss_pred hCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 188 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
|.|. ..|+.=|+ .||.+..+.+.+ .++++.+++.++
T Consensus 68 y~I~------KyPTlKvf-rnG~~~~rEYRg---~RsVeaL~efi~ 103 (375)
T KOG0912|consen 68 YHIN------KYPTLKVF-RNGEMMKREYRG---QRSVEALIEFIE 103 (375)
T ss_pred hccc------cCceeeee-eccchhhhhhcc---chhHHHHHHHHH
Confidence 9998 78988888 799988865433 356666666554
No 165
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.041 Score=51.16 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=58.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
+..++.|| +.||++|....|.+.++...+++ -+.+..|..+ ....+.+.|
T Consensus 48 ~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~----------------------------~~~~~~~~y 97 (383)
T KOG0191|consen 48 SPWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCD----------------------------EHKDLCEKY 97 (383)
T ss_pred CceEEEEE-CCCCcchhhhchHHHHHHHHhcC-ceEEEEeCch----------------------------hhHHHHHhc
Confidence 37899999 99999999999999999888874 1333333222 346788899
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
++. ..|+..++.+..+++.. .. ..+.+.+...+.
T Consensus 98 ~i~------gfPtl~~f~~~~~~~~~--~~---~~~~~~~~~~~~ 131 (383)
T KOG0191|consen 98 GIQ------GFPTLKVFRPGKKPIDY--SG---PRNAESLAEFLI 131 (383)
T ss_pred CCc------cCcEEEEEcCCCceeec--cC---cccHHHHHHHHH
Confidence 998 88999888665222222 11 345666666544
No 166
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.04 E-value=0.0069 Score=58.28 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=61.7
Q ss_pred ccccCCcEEEEEEecCCCCCChHHHHH-HHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 103 SDYIGKKYVILFFYPLDFTFVCPTEIT-AFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 103 sd~~gkk~vvL~F~~~t~Cp~C~~~l~-~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
.+-++| +|+|+|+ ++||-.|+..-+ -+++.+...+-.|+..+=+.+-. + ...+
T Consensus 470 a~~~~~-pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~---------~---------------~p~~ 523 (569)
T COG4232 470 AEAKAK-PVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA---------N---------------DPAI 523 (569)
T ss_pred HhCCCC-cEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC---------C---------------CHHH
Confidence 344554 9999999 999999986644 34455555555566555433211 0 1123
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
.++-++||+. ..|++++++++|.-.....+ .-+.+.+++.++.
T Consensus 524 ~~lLk~~~~~------G~P~~~ff~~~g~e~~~l~g----f~~a~~~~~~l~~ 566 (569)
T COG4232 524 TALLKRLGVF------GVPTYLFFGPQGSEPEILTG----FLTADAFLEHLER 566 (569)
T ss_pred HHHHHHcCCC------CCCEEEEECCCCCcCcCCcc----eecHHHHHHHHHH
Confidence 5677888888 88999999999886655211 1245666666654
No 167
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.91 E-value=0.035 Score=38.56 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=22.3
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|..|| ++|||.|+...+.|.+ .|+.+-.|.++.
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~-------~~~~~~~idi~~ 34 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDK-------LGAAYEWVDIEE 34 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCceEEEeCcC
Confidence 55677 8999999987776543 355555555553
No 168
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.85 E-value=0.04 Score=45.01 Aligned_cols=105 Identities=11% Similarity=0.029 Sum_probs=47.1
Q ss_pred EecccccCCcEEEEEEecCCCCCChHHHHH-HHHH--HHHHHHhcCcEEEEEeCC--CHHHHHHHHHHhhhcCCCCCccc
Q 024201 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEIT-AFSD--RYTEFEKLNTEILGVSTD--SVFSHLAWVQTDRKSGGLGDLKY 174 (271)
Q Consensus 100 v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~-~L~~--~~~~~~~~gv~vv~VS~d--~~~~~~~~~~~~~~~~~~~~~~f 174 (271)
+....-.+| +++|.+. .+||..|..+.. .+.+ +.+.+. -.+|.|-+| ...++......+
T Consensus 30 ~~~Ak~e~K-pIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN---~~FI~VkvDree~Pdid~~y~~~----------- 93 (163)
T PF03190_consen 30 LEKAKKENK-PIFLSIG-YSWCHWCHVMERESFSDPEVAEYLN---RNFIPVKVDREERPDIDKIYMNA----------- 93 (163)
T ss_dssp HHHHHHHT---EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHH---HH-EEEEEETTT-HHHHHHHHHH-----------
T ss_pred HHHHHhcCC-cEEEEEE-ecCCcchhhhcccCcCCHHHHHHHh---CCEEEEEeccccCccHHHHHHHH-----------
Confidence 344444556 8999998 899999985543 2222 122221 134444444 322222211111
Q ss_pred ceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCC----CCCHHHHHHHHHHH
Q 024201 175 PLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAI----GRSVDETLRTLQAL 235 (271)
Q Consensus 175 ~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~----~~~~~e~l~~l~~l 235 (271)
.....|.. ..|.+++++++|+..+...+-... .....++|+.+..+
T Consensus 94 ---------~~~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 94 ---------VQAMSGSG------GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp ---------HHHHHS---------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred ---------HHHhcCCC------CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 11112444 689999999999999985442221 12455666655543
No 169
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.12 Score=41.69 Aligned_cols=90 Identities=14% Similarity=0.119 Sum_probs=55.6
Q ss_pred ccCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 105 YIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 105 ~~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
-.+| +.+|.|- ...|++|...-..+ .++++-++. .+.++-+......... +.. +.. ...-..
T Consensus 40 ~~~K-ylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~-f~~--------g~k---ee~~s~ 104 (182)
T COG2143 40 PNDK-YLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVL-FKV--------GDK---EEKMST 104 (182)
T ss_pred ccCc-EEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceE-eec--------Cce---eeeecH
Confidence 3566 8888888 57799998654443 344444443 4666555443211100 000 000 111123
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
.++++.|++. .+|++++.|++|+-+...
T Consensus 105 ~ELa~kf~vr------stPtfvFfdk~Gk~Il~l 132 (182)
T COG2143 105 EELAQKFAVR------STPTFVFFDKTGKTILEL 132 (182)
T ss_pred HHHHHHhccc------cCceEEEEcCCCCEEEec
Confidence 6999999999 999999999999988874
No 170
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.29 E-value=0.1 Score=43.76 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=50.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC-H-------------HHHHHHHHHhhhcCCCCC
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-V-------------FSHLAWVQTDRKSGGLGD 171 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~-~-------------~~~~~~~~~~~~~~~~~~ 171 (271)
.++ +.|++|. -..||+|+...+.+.+ .-.+-.+.++.+.... + +..++|.+.+........
T Consensus 76 ~~~-~~i~~f~-D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGK-RVVYVFT-DPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCC-EEEEEEE-CCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 355 6777777 6789999999888876 1122234555555432 1 112334333311110000
Q ss_pred c-ccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEE
Q 024201 172 L-KYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQ 212 (271)
Q Consensus 172 ~-~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~ 212 (271)
. ......+.+.++++.+|+. .+|+++ + .||+++
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~------gtPtii-~-~~G~~~ 184 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVN------GTPTIV-L-ADGRVV 184 (197)
T ss_pred ccccCchHHHHHHHHHHcCCC------cccEEE-E-CCCeEe
Confidence 0 0111122346788899998 899986 4 468764
No 171
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.019 Score=54.63 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=29.1
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhc
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKL 141 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~ 141 (271)
-|||.|| +.||++|...-|.+.++.+.|++.
T Consensus 386 dVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 386 DVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred ceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 6999999 999999999999999999999874
No 172
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.40 E-value=0.025 Score=54.27 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=49.7
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCc-EEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNT-EILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv-~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.-+|.|| ++||+.|+...|.+.++.+.+++ .+| .|-+|.+-+ +.+..++|.
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~--------------------------~~N~~lCRe 111 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD--------------------------EENVKLCRE 111 (606)
T ss_pred hHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc--------------------------hhhhhhHhh
Confidence 4588999 89999999999999998887764 233 344465533 135678999
Q ss_pred hCCccCCCCccceEEEEEcCC
Q 024201 188 YGVLIPDQGIALRGLFIIDKE 208 (271)
Q Consensus 188 ygv~~~~~g~~~P~~~lID~~ 208 (271)
|+|. ..|+....-++
T Consensus 112 f~V~------~~Ptlryf~~~ 126 (606)
T KOG1731|consen 112 FSVS------GYPTLRYFPPD 126 (606)
T ss_pred cCCC------CCceeeecCCc
Confidence 9998 78888877766
No 173
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.35 E-value=0.12 Score=36.47 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=25.1
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
|+.|+ ..|||+|....+.|.++. +. ..+.++-|..+
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 35666 899999999988887765 21 12566666654
No 174
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.12 E-value=0.23 Score=32.98 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=25.7
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
|+.|. ..+||.|......| +++|+.+-.+.++.....
T Consensus 1 V~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~ 37 (60)
T PF00462_consen 1 VVVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEA 37 (60)
T ss_dssp EEEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHH
T ss_pred cEEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhH
Confidence 34556 78999998766555 455788888877764433
No 175
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.98 E-value=0.35 Score=40.91 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=25.1
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHH---HHHHHHHHhcCcEEEE
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILG 147 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L---~~~~~~~~~~gv~vv~ 147 (271)
.|+ +.|+.|+. -.||+|....+.+ ..+.+.+.+ ++.++-
T Consensus 36 ~~~-~~VvEffd-y~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~ 77 (207)
T PRK10954 36 AGE-PQVLEFFS-FYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTK 77 (207)
T ss_pred CCC-CeEEEEeC-CCCccHHHhcccccchHHHHHhCCC-CCeEEE
Confidence 355 66777774 4499999877655 555665543 555554
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.80 E-value=0.54 Score=45.95 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=50.2
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
..|-+|. ..+||.|+.....++++..+.. ++..-.|.... ..++++.|+
T Consensus 478 ~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~----------------------------~~~~~~~~~ 526 (555)
T TIGR03143 478 VNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSH----------------------------FPDLKDEYG 526 (555)
T ss_pred eEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcc----------------------------cHHHHHhCC
Confidence 3455556 8999999987777777776643 44433332221 257888999
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
+. ..|++|| ||++++. +. ...+++++.|
T Consensus 527 v~------~vP~~~i---~~~~~~~--G~----~~~~~~~~~~ 554 (555)
T TIGR03143 527 IM------SVPAIVV---DDQQVYF--GK----KTIEEMLELI 554 (555)
T ss_pred ce------ecCEEEE---CCEEEEe--eC----CCHHHHHHhh
Confidence 99 8898766 5666654 21 2567777665
No 177
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=93.52 E-value=0.4 Score=32.34 Aligned_cols=32 Identities=9% Similarity=0.050 Sum_probs=21.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..|. ..|||.|......|.+ .|+.+..+..|.
T Consensus 3 ~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 3 TVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 4455 7999999976554433 467777777664
No 178
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.39 Score=44.61 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=34.7
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh-cCcEEEEEeCC
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTD 151 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~-~gv~vv~VS~d 151 (271)
+...++.|+ +.||++|+...|.+.++..+++. .++.+..+..+
T Consensus 162 ~~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred CcceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 335677888 89999999999999999998874 56777777665
No 179
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.44 E-value=0.58 Score=35.34 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=50.0
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
++++|+=. .+.||.....+.+|.+.+++..+. +.+..|-+-... +....++..|
T Consensus 20 ~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R------------------------~vSn~IAe~~ 73 (105)
T PF11009_consen 20 KPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYR------------------------PVSNAIAEDF 73 (105)
T ss_dssp SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGH------------------------HHHHHHHHHH
T ss_pred CcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCc------------------------hhHHHHHHHh
Confidence 37777777 688999999999999988887653 777766553211 1246899999
Q ss_pred CCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 189 GVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 189 gv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
||.. -.|..+|| +||++++..
T Consensus 74 ~V~H-----eSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 74 GVKH-----ESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp T---------SSEEEEE-ETTEEEEEE
T ss_pred CCCc-----CCCcEEEE-ECCEEEEEC
Confidence 9995 36999999 799999985
No 180
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.30 E-value=0.36 Score=34.57 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=29.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|..|. .+|||.|......|.++..++ +|+.+.-|.++.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 44555 799999999999999988765 377777777764
No 181
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=0.19 Score=38.68 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=35.6
Q ss_pred ecccc-cCCcEEEEEEecC-------CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 101 KLSDY-IGKKYVILFFYPL-------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 101 ~Lsd~-~gkk~vvL~F~~~-------t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+++++ +|+ .+.+.|... +|||.|....|-+.+..+... .++.+|-|-+.+
T Consensus 18 ~~~~~~n~~-~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 18 TLKNVENGK-TIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGN 75 (128)
T ss_pred HHHHHhCCc-eEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecC
Confidence 34444 566 466666633 699999999999998887543 478888887754
No 182
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.01 E-value=0.77 Score=32.38 Aligned_cols=34 Identities=6% Similarity=0.109 Sum_probs=24.1
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.|..|. .+|||.|......|. +.|+.+..|.++.
T Consensus 9 ~V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~ 42 (79)
T TIGR02190 9 SVVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGN 42 (79)
T ss_pred CEEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCC
Confidence 345555 799999998776664 3477777777764
No 183
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=91.63 E-value=0.8 Score=30.59 Aligned_cols=41 Identities=7% Similarity=-0.058 Sum_probs=25.6
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHH
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~ 161 (271)
+.|. ..|||.|+.....|.+. ++.+.-+.++......++..
T Consensus 3 ~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~ 43 (72)
T cd02066 3 VVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELK 43 (72)
T ss_pred EEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHH
Confidence 4455 78999999877666543 46666666665443434333
No 184
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.44 E-value=0.96 Score=32.29 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=22.1
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.|...|||+|......| +++|+.+--|.++.
T Consensus 5 lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~ 35 (81)
T PRK10329 5 IYTRNDCVQCHATKRAM-------ESRGFDFEMINVDR 35 (81)
T ss_pred EEeCCCCHhHHHHHHHH-------HHCCCceEEEECCC
Confidence 33379999998765555 34688887777764
No 185
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=90.62 E-value=1 Score=39.81 Aligned_cols=91 Identities=11% Similarity=0.159 Sum_probs=58.9
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+|||+|| -..++.|......|..++.+|. .+.|+-|..... + +...|.
T Consensus 148 ~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~----------------------------~-~~~~f~ 195 (265)
T PF02114_consen 148 WVVVHIY-EPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKC----------------------------P-ASENFP 195 (265)
T ss_dssp EEEEEEE--TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGC----------------------------C-TTTTS-
T ss_pred EEEEEEE-eCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhcc----------------------------C-cccCCc
Confidence 7889999 6779999999999999999998 588887755320 0 222344
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCC-CC--CHHHHHHHHHHHHHhh
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAI-GR--SVDETLRTLQALQYVQ 239 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~-~~--~~~e~l~~l~~l~~~~ 239 (271)
.. .+|+.+++ ++|.++...++-... +. ..+++-..|.....+.
T Consensus 196 ~~------~LPtllvY-k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 196 DK------NLPTLLVY-KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp TT------C-SEEEEE-ETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS
T ss_pred cc------CCCEEEEE-ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 55 67888888 799999998763322 22 3455555554443333
No 186
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.45 E-value=0.49 Score=37.08 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=26.8
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEE
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG 147 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~ 147 (271)
++|+.|+ --+||+|....+.+.++..++.+ +.++.
T Consensus 7 ~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~ 41 (154)
T cd03023 7 VTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVF 41 (154)
T ss_pred EEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEE
Confidence 6777777 77899999999999888776643 44444
No 187
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.13 E-value=1.1 Score=31.65 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=44.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEe--CCCH------HHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVS--TDSV------FSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS--~d~~------~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
..|+ .-.||.|....+.+.++.... ..++.+.-+. .... ........... ......+.-.+ .+...
T Consensus 2 ~~f~-d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l---~~~~~ 75 (98)
T cd02972 2 VEFF-DPLCPYCYLFEPELEKLLYAD-DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAA-QGKFEALHEAL---ADTAL 75 (98)
T ss_pred eEEE-CCCCHhHHhhhHHHHHHHhhc-CCcEEEEEeccccCCCCCcchHHHHHHHHHHHH-cCcHHHHHHHH---HHHHH
Confidence 4566 677999999999998887433 3356665543 3321 11111111110 00000000011 45677
Q ss_pred HHHhCCccCCCCccceEEEEEc
Q 024201 185 SKSYGVLIPDQGIALRGLFIID 206 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID 206 (271)
++.+|+. .+|++++-|
T Consensus 76 ~~~~g~~------g~Pt~v~~~ 91 (98)
T cd02972 76 ARALGVT------GTPTFVVNG 91 (98)
T ss_pred HHHcCCC------CCCEEEECC
Confidence 8888887 788887765
No 188
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=89.88 E-value=1.3 Score=31.93 Aligned_cols=36 Identities=11% Similarity=-0.052 Sum_probs=24.0
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
+.|. .+|||+|......|.++..++. ++.+.-|..+
T Consensus 3 ~vys-~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 3 VIFG-RPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEe-CCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 3444 7999999988877776654432 4566666655
No 189
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.81 E-value=0.96 Score=35.94 Aligned_cols=49 Identities=4% Similarity=-0.019 Sum_probs=35.3
Q ss_pred EecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHH-HhcCcEEEEEeC
Q 024201 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF-EKLNTEILGVST 150 (271)
Q Consensus 100 v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~-~~~gv~vv~VS~ 150 (271)
+.+-+-.++ ++|+.|+ --.||+|....+.+.++.+++ ....+.++.+.+
T Consensus 5 ~~~G~~~a~-~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAP-ITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTS-EEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCC-eEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 445555566 7788888 566999999999999999988 233577777655
No 190
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=89.57 E-value=1 Score=33.43 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=20.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|+.|- .+|||+|.....-|. +.|+.+-.|.+|.
T Consensus 10 Vvvys-k~~Cp~C~~ak~~L~-------~~~i~~~~vdid~ 42 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKRLLL-------TLGVNPAVHEIDK 42 (99)
T ss_pred EEEEE-CCCCHHHHHHHHHHH-------HcCCCCEEEEcCC
Confidence 44555 699999987655443 3366655666654
No 191
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=1.5 Score=31.23 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=23.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH--HHHHHHHH
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF--SHLAWVQT 162 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~--~~~~~~~~ 162 (271)
-.+||+|......|. .+|+.+.-|.++... +.+.+++.
T Consensus 8 ~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~ 47 (80)
T COG0695 8 KPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKR 47 (80)
T ss_pred CCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHH
Confidence 578999987765554 557766665554422 44444444
No 192
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=88.98 E-value=1.6 Score=30.03 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=21.9
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+|...+||.|......|. ++|+.+-.+.++.
T Consensus 3 ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~ 33 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALE-------EHGIAFEEINIDE 33 (72)
T ss_pred EEeCCCCHHHHHHHHHHH-------HCCCceEEEECCC
Confidence 344789999998777665 3577777776664
No 193
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=88.87 E-value=1.5 Score=30.02 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=21.4
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+.|. .+|||.|......|. +.|+.+.-+.++.
T Consensus 4 ~lys-~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~ 35 (72)
T cd03029 4 SLFT-KPGCPFCARAKAALQ-------ENGISYEEIPLGK 35 (72)
T ss_pred EEEE-CCCCHHHHHHHHHHH-------HcCCCcEEEECCC
Confidence 3344 689999998755554 3477776666654
No 194
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=88.64 E-value=12 Score=31.73 Aligned_cols=90 Identities=13% Similarity=0.253 Sum_probs=50.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------HHHHHHHHHHhhhcCCCCCcccceEEcCChH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--------VFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~--------~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (271)
||..|..-.|.-|+..-..|.++..+ .+|-.++..+|- ++...+|-+.. ..
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQ------------------r~ 59 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYWDYLGWKDPFASPEFTQRQ------------------RA 59 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT-SSSS--TT--HHHHHHH------------------HH
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcccCCCCCCccCChhHHHHH------------------HH
Confidence 45666688999999999999998877 378888888873 12222222221 23
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQ 236 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~ 236 (271)
.++.+|. .++.+|.++ | ||+.-.. +.+.+++...|+...
T Consensus 60 Y~~~~~~----~~vYTPQ~v-V--nG~~~~~-------g~~~~~~~~ai~~~~ 98 (202)
T PF06764_consen 60 YARRFGL----RSVYTPQVV-V--NGREHRV-------GSDRAAVEAAIQAAR 98 (202)
T ss_dssp HHHHTT-----S---SSEEE-E--TTTEEEE-------TT-HHHHHHHHHHHH
T ss_pred HHHHhCC----CCCcCCeEE-E--CCeeeee-------ccCHHHHHHHHHHhh
Confidence 3334433 355788874 5 6877765 356677777776554
No 195
>PHA03050 glutaredoxin; Provisional
Probab=88.08 E-value=1.2 Score=33.67 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=15.0
Q ss_pred EEEEecCCCCCChHHHHHHHHHH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDR 134 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~ 134 (271)
|++|. .+|||+|.....-|.++
T Consensus 15 V~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 44555 79999998766555443
No 196
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.73 E-value=5 Score=38.81 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=20.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTE 137 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~ 137 (271)
.-|..|. ...||+|+.....++++..+
T Consensus 118 ~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 118 FHFETYV-SLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred eEEEEEE-cCCCCCcHHHHHHHHHHHHh
Confidence 4566777 67899999888877777664
No 197
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=87.69 E-value=2.1 Score=29.78 Aligned_cols=35 Identities=6% Similarity=0.226 Sum_probs=22.4
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|+.|. ..|||.|......|.++.. .+.++=|..+.
T Consensus 2 v~~y~-~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 2 VVVFS-KSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEE-cCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 34455 7999999988777766543 24455555543
No 198
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=87.51 E-value=3.5 Score=28.20 Aligned_cols=32 Identities=6% Similarity=0.058 Sum_probs=22.0
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..|. .++||.|......|.+ +|+.+--+.++.
T Consensus 3 ~ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 3 EIYT-KPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EEEe-CCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 3444 7999999887666643 477777776664
No 199
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=86.64 E-value=4.1 Score=27.95 Aligned_cols=28 Identities=7% Similarity=-0.078 Sum_probs=20.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..+||.|.....-|.+ .|+.+..+.++.
T Consensus 8 ~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 8 RLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 5899999877666653 577777777764
No 200
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=86.49 E-value=1.2 Score=39.87 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=50.0
Q ss_pred cccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 102 LSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+.|.+....-++.|| +.||..|+..-|--.+.--++++-|..|-.=-.| --. -
T Consensus 37 FkdnkdddiW~VdFY-APWC~HCKkLePiWdeVG~elkdig~PikVGKlD-------------------aT~-------f 89 (468)
T KOG4277|consen 37 FKDNKDDDIWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD-------------------ATR-------F 89 (468)
T ss_pred hhhcccCCeEEEEee-chhhhhcccccchhHHhCcchhhcCCceeecccc-------------------ccc-------c
Confidence 444455546788999 9999999988887777666666555332110000 111 1
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEE
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQ 212 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~ 212 (271)
..++..||+. ..|+.-++ ++|.++
T Consensus 90 ~aiAnefgiq------GYPTIk~~-kgd~a~ 113 (468)
T KOG4277|consen 90 PAIANEFGIQ------GYPTIKFF-KGDHAI 113 (468)
T ss_pred hhhHhhhccC------CCceEEEe-cCCeee
Confidence 5788999999 88998888 444443
No 201
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=86.14 E-value=8 Score=37.58 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=72.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
..+|..+|+..+. .+|..++|.|+.|..++||.|-... . . ....+.. +....++.++.|..+...
T Consensus 427 ~~pG~r~p~~~~~----~~~~~~~l~dl~g~~f~ll~~~~~~--~---~--~~~~~~~-~~~~~~~~~~~~~~~~~~--- 491 (547)
T PRK08132 427 PVPGAPAPDAPVR----ADGEPGWLLDLLGGGFTLLLFGDDA--A---A--AALLQAL-AAAALPVRVVAVVPAGAA--- 491 (547)
T ss_pred CCCCCCCCCCccc----CCCCceEHHHhcCCCEEEEEecCCc--h---h--hhhhhhh-hccCCceEEEEEecCccc---
Confidence 5689999999875 3455788999888878888775211 0 0 1111111 112224555555443211
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~ 234 (271)
. .+...+.|.++.+.+.|++. ....+||-+||.|-...- ....+.+.+.|+.
T Consensus 492 -----~--------~~~~~~~d~~~~~~~~~~~~-------~~~~~LvRPDg~va~~~~-----~~~~~~~~~~l~~ 543 (547)
T PRK08132 492 -----Q--------AAAGVLEDADGLAAERYDAR-------PGTVYLIRPDQHVAARWR-----TPDAAAVRAALAR 543 (547)
T ss_pred -----c--------cCcccccCcccHHHHHhCCC-------CCeEEEECCCceEEEEec-----CCCHHHHHHHHHH
Confidence 0 01124578899999999986 345899999999998842 2356777776664
No 202
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=85.95 E-value=2.3 Score=34.23 Aligned_cols=57 Identities=18% Similarity=0.355 Sum_probs=39.1
Q ss_pred ccc-ceEEcCChHHHH-HhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 172 LKY-PLIADITKSISK-SYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 172 ~~f-~~l~D~~~~~~~-~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
++| .++.|..+ +++ +|++.-. .-..+++|++|+|.++.-+.+. ...+.+++..|..|
T Consensus 124 ~pwSq~vlD~~g-vak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~~l 182 (184)
T COG3054 124 YPWSQFVLDSNG-VAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQKL 182 (184)
T ss_pred CCceeeEEccch-hhhhhhccccc-----cceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHHHh
Confidence 344 36778887 555 8998742 3458999999999999744332 34567777777654
No 203
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=84.85 E-value=5.9 Score=29.18 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=22.8
Q ss_pred EEEEEEec---CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 110 YVILFFYP---LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 110 ~vvL~F~~---~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
.+||+-.. .+|||+|.....-|.+ .|+.+..+.++.
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~ 51 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLE 51 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCC
Confidence 46666542 2799999876555543 467766666654
No 204
>PRK10638 glutaredoxin 3; Provisional
Probab=83.13 E-value=5.6 Score=28.07 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=19.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..|||+|......|.+ +|+.+.-+.++.
T Consensus 9 ~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~ 36 (83)
T PRK10638 9 KATCPFCHRAKALLNS-------KGVSFQEIPIDG 36 (83)
T ss_pred CCCChhHHHHHHHHHH-------cCCCcEEEECCC
Confidence 6899999877665553 467666666664
No 205
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=83.03 E-value=15 Score=35.54 Aligned_cols=119 Identities=12% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~ 157 (271)
+.+|..+|+..+. ..+|....++++.|...+||.|.. . +.. .+.. ...+.+...+..+|.+......
T Consensus 411 ~~~G~~~p~~~~~---~~~~~~~~~d~~~~~~~~ll~~~~-~--~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~--- 477 (538)
T PRK06183 411 SPVGTLFPQPRVE---LGGGDRGLLDDVLGPGFAVLGWGC-D--PLA--GLSD--EQRARWRALGARFVQVVPAVQA--- 477 (538)
T ss_pred CCcccCcCCCeeE---cCCCCcccchhccCCceEEEEecC-C--chh--cCCH--HHHHHHHHcCCeEEEEeccccc---
Confidence 5689999999886 334444567888888788887742 1 211 1111 1112244457777777543211
Q ss_pred HHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
.+ -....+.|.++.+.+.|+.. -...+||-+|+.|-... .....+.+++.|.
T Consensus 478 ~~------------~~~~~~~d~~g~~~~~~~~~-------~~~~~lvRPD~~v~~~~-----~~~~~~~~~~~l~ 529 (538)
T PRK06183 478 HT------------AQDDHDSDVDGALRAWLARH-------GASAVLLRPDRYVAAAA-----DAQTLGALLAALA 529 (538)
T ss_pred cc------------CCCceeecCCchHHHHHHhC-------CCEEEEECCCEEEEEee-----CHHHHHHHHHHHH
Confidence 01 12346789999999999976 34589999999998763 1224566666554
No 206
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.57 E-value=13 Score=36.01 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=20.3
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEF 138 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~ 138 (271)
.-|..|. ...||+|+.....++++..+.
T Consensus 119 ~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~~ 146 (515)
T TIGR03140 119 LHFETYV-SLTCQNCPDVVQALNQMALLN 146 (515)
T ss_pred eEEEEEE-eCCCCCCHHHHHHHHHHHHhC
Confidence 5577777 677999997777776666553
No 207
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=82.35 E-value=5.3 Score=28.88 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=21.1
Q ss_pred EEEEEEec---CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 110 YVILFFYP---LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 110 ~vvL~F~~---~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+|||+--. ..|||+|......|.+ .|+.+-.|.++.
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~ 47 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILE 47 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCC
Confidence 56655441 1589999876555443 356666666543
No 208
>PRK12559 transcriptional regulator Spx; Provisional
Probab=81.84 E-value=6.1 Score=30.97 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=37.6
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
+|...+|+.|+....-| +++|+.+-.+.. + +.+++..|++.. +.++.-+....+..++.++.
T Consensus 4 iY~~~~C~~crkA~~~L-------~~~gi~~~~~di~~~~~s~~el~~~l~~~-------~~g~~~lin~~~~~~k~l~~ 69 (131)
T PRK12559 4 LYTTASCASCRKAKAWL-------EENQIDYTEKNIVSNSMTVDELKSILRLT-------EEGATEIISTRSKTFQDLNI 69 (131)
T ss_pred EEeCCCChHHHHHHHHH-------HHcCCCeEEEEeeCCcCCHHHHHHHHHHc-------CCCHHHHHhcCcHHHHhCCC
Confidence 44478899999865444 444666555543 3 456778888864 23333333445666666665
Q ss_pred c
Q 024201 191 L 191 (271)
Q Consensus 191 ~ 191 (271)
.
T Consensus 70 ~ 70 (131)
T PRK12559 70 N 70 (131)
T ss_pred C
Confidence 4
No 209
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=81.55 E-value=3.2 Score=32.50 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=37.8
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--CC--HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 114 FFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--DS--VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 114 ~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d~--~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.+|...+|+.|+....-| .++|+.+..+.+ ++ .+++.+|.+.. +.++.-+....+...+.++
T Consensus 3 ~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~~~~~~~eL~~~l~~~-------~~g~~~lin~~~~~~k~l~ 68 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFSSPLTIDEIKQILRMT-------EDGTDEIISTRSKVFQKLN 68 (131)
T ss_pred EEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccCChhhHHHHHHHHHHh-------cCCHHHHHhcCcHHHHhCC
Confidence 344478999998865443 445766666554 32 35667777765 3344334445566666665
Q ss_pred Cc
Q 024201 190 VL 191 (271)
Q Consensus 190 v~ 191 (271)
..
T Consensus 69 ~~ 70 (131)
T PRK01655 69 VD 70 (131)
T ss_pred CC
Confidence 54
No 210
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=81.02 E-value=5.1 Score=27.79 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=20.9
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
..|. ..+||.|......|.+ .|+.+--+.++.
T Consensus 2 ~ly~-~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~ 33 (79)
T TIGR02181 2 TIYT-KPYCPYCTRAKALLSS-------KGVTFTEIRVDG 33 (79)
T ss_pred EEEe-cCCChhHHHHHHHHHH-------cCCCcEEEEecC
Confidence 3455 7999999887766653 356555555543
No 211
>PRK06184 hypothetical protein; Provisional
Probab=80.34 E-value=20 Score=34.34 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=68.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEeccccc-CCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~-gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~ 156 (271)
+.+|..+|+..+. ..+|+.+++-|+. +.+++||.|-...+ .. . ...++.++.|....
T Consensus 386 ~~~G~r~p~~~~~---~~~~~~~~l~d~~~~~~~~ll~~~~~~~--~~----------~---~~~~~~~~~~~~~~---- 443 (502)
T PRK06184 386 LRAGDRAPDAPLL---GAAGQPTRLFDLFRGPHWTLLAFGAGAA--AI----------L---ARRGLRIHRVGDAA---- 443 (502)
T ss_pred CCCcCCCCCchhc---cCCCceeeHHHhhCCCcEEEEEecCCch--hh----------h---hhcCceEEEecccC----
Confidence 6689999999886 3355566666654 44588887642222 00 0 12356666553221
Q ss_pred HHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
....+.|.++.+.+.|++. ....+||-|||-|-+... ....+.+.+.|+.+
T Consensus 444 ----------------~~~~~~d~~g~~~~~~~~~-------~~~~~lvRPDg~v~~~~~-----~~~~~~~~~~l~~~ 494 (502)
T PRK06184 444 ----------------EGGDLVDDAGHFRDAYGLT-------GGTLVLVRPDGYVGLIAA-----GDDAAALEAYLARV 494 (502)
T ss_pred ----------------CCCceeCCCccHHHHhcCC-------CCcEEEECCCcceEEEec-----CCCHHHHHHHHHHh
Confidence 0113578889999999986 345799999999998741 23567777777654
No 212
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=80.24 E-value=17 Score=28.32 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred CcEEEEEEecCC--CCCChH-HHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 108 KKYVILFFYPLD--FTFVCP-TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 108 kk~vvL~F~~~t--~Cp~C~-~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
++..||.|.+.. .-+-+. .....|.++.++|+.+.+.++-|..+. ...+
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~----------------------------~~~~ 71 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA----------------------------QLDL 71 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc----------------------------cHHH
Confidence 347788887532 112243 335667777777776555555554432 1237
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.+.||+... ..|.+++++.++. +|....+ .-..+.+.+.++.+
T Consensus 72 ~~~fgl~~~----~~P~v~i~~~~~~-KY~~~~~---~~t~e~i~~Fv~~~ 114 (130)
T cd02983 72 EEALNIGGF----GYPAMVAINFRKM-KFATLKG---SFSEDGINEFLREL 114 (130)
T ss_pred HHHcCCCcc----CCCEEEEEecccC-ccccccC---ccCHHHHHHHHHHH
Confidence 777887622 4789999998875 5553211 12345666666554
No 213
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=79.14 E-value=4.1 Score=32.79 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=29.2
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEE
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG 147 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~ 147 (271)
.++ +.|+.|+ --.||+|....+.+.++.+++. .++.+.-
T Consensus 14 ~~~-~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~-~~v~~~~ 52 (178)
T cd03019 14 SGK-PEVIEFF-SYGCPHCYNFEPILEAWVKKLP-KDVKFEK 52 (178)
T ss_pred CCC-cEEEEEE-CCCCcchhhhhHHHHHHHHhCC-CCceEEE
Confidence 455 7788888 4569999999999999888873 3555543
No 214
>PRK10824 glutaredoxin-4; Provisional
Probab=79.08 E-value=3.2 Score=31.87 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=15.8
Q ss_pred EEEEEEecC----CCCCChHHHHHHHHH
Q 024201 110 YVILFFYPL----DFTFVCPTEITAFSD 133 (271)
Q Consensus 110 ~vvL~F~~~----t~Cp~C~~~l~~L~~ 133 (271)
+|||+-- + .|||+|.....-|.+
T Consensus 16 ~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 16 PILLYMK-GSPKLPSCGFSAQAVQALSA 42 (115)
T ss_pred CEEEEEC-CCCCCCCCchHHHHHHHHHH
Confidence 5666654 4 499999887666554
No 215
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=77.08 E-value=7.4 Score=30.54 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=38.9
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC----CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d----~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
+|...+|+.|+....- ++++|+.+-.+... +.+++..|.+.. +.++.-+....+...+.++.
T Consensus 4 iY~~~~C~~crkA~~~-------L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~-------~~~~~~lin~~~~~~k~L~~ 69 (132)
T PRK13344 4 IYTISSCTSCKKAKTW-------LNAHQLSYKEQNLGKEPLTKEEILAILTKT-------ENGIESIVSSKNRYAKALDC 69 (132)
T ss_pred EEeCCCCHHHHHHHHH-------HHHcCCCeEEEECCCCCCCHHHHHHHHHHh-------CCCHHHhhccCcHHHHhCCc
Confidence 4446889999875533 44557766666543 356778888876 33444444455666666664
Q ss_pred c
Q 024201 191 L 191 (271)
Q Consensus 191 ~ 191 (271)
.
T Consensus 70 ~ 70 (132)
T PRK13344 70 D 70 (132)
T ss_pred c
Confidence 4
No 216
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=76.84 E-value=7.2 Score=29.62 Aligned_cols=63 Identities=6% Similarity=-0.047 Sum_probs=38.6
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
+|...+|+.|+.....|.+ +|+.+..+.. + +..++.+|.+.. +.++.-+....+..++..+.
T Consensus 4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~-------~~~~~~l~n~~~~~~k~l~~ 69 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT-------ENGVEDIISTRSKAFKNLNI 69 (115)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh-------cCCHHHHHhcCcHHHHHcCC
Confidence 3436889999876655543 4666666654 3 245667787765 33444444456666776665
Q ss_pred c
Q 024201 191 L 191 (271)
Q Consensus 191 ~ 191 (271)
.
T Consensus 70 ~ 70 (115)
T cd03032 70 D 70 (115)
T ss_pred C
Confidence 4
No 217
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=76.18 E-value=26 Score=28.46 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=42.6
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC---HHHHHHHHHHhhhc
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS---VFSHLAWVQTDRKS 166 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~---~~~~~~~~~~~~~~ 166 (271)
+++.+|..|. ++-... ..| ..+...+++..+.++|..++-+|.-+ ....+.|++.+...
T Consensus 9 TiT~SD~~G~--i~~~~G-~d~------~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~ 70 (157)
T PF08235_consen 9 TITKSDVLGH--ILPILG-KDW------THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQ 70 (157)
T ss_pred CcCccchhhh--hhhccC-chh------hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhC
Confidence 7899998887 333333 334 35677788999999999999998765 34558898887544
No 218
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=76.17 E-value=36 Score=26.77 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=26.6
Q ss_pred cceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 198 ~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..|.+.|+ |||++++..-...--++..++|.+.|+..
T Consensus 95 SSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 95 SSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp -SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 57899999 89999998654555567788888877643
No 219
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.06 E-value=20 Score=35.09 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=22.0
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCCc---EEEE
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGV---IQHS 214 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G~---V~~~ 214 (271)
+.+.++.|++. ..|++.|+|.+|. |++.
T Consensus 408 ~~~~~~~~~v~------~~P~~~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 408 EPESETLPKIT------KLPTVALLDDDGNYTGLKFH 438 (555)
T ss_pred chhhHhhcCCC------cCCEEEEEeCCCcccceEEE
Confidence 56788899988 7899999987765 5554
No 220
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=75.87 E-value=6.3 Score=29.99 Aligned_cols=60 Identities=5% Similarity=-0.107 Sum_probs=35.4
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC----HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS----VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 117 ~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~----~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
...+|+.|+....-|.+ +|+.+..|.... ..++.+|.+.. +.++.-+....+..++.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~-------~~~~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL-------EDGIDPLLNTRGQSYRALNT 68 (117)
T ss_pred eCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc-------CCCHHHheeCCCcchhhCCc
Confidence 36889999887666554 466666665532 34456666655 33343334455556666654
No 221
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=75.29 E-value=5.6 Score=30.07 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=25.7
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHHHHHHHHHh
Q 024201 116 YPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTD 163 (271)
Q Consensus 116 ~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~~~~~~~~~ 163 (271)
|...+|+.|+....-|.+ +|+.+..+.+ + +..++..|.+..
T Consensus 4 Y~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 4 YEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred EECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHc
Confidence 336889999877655544 4666655544 3 245566777654
No 222
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=75.05 E-value=44 Score=27.21 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=66.7
Q ss_pred CCCCCCeEEeeecCCCceeEecccc---cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhc----------------
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDY---IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL---------------- 141 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~---~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~---------------- 141 (271)
|..+|++.+... .+++++.|.+. .|+ +-|++|- +. ..+..+...|.++.+.+...
T Consensus 1 G~R~~~a~V~r~--aD~~p~~L~~~~~adGr-frI~vFa-gd--~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~ 74 (167)
T cd02979 1 GRRFPSAPVVRQ--ADALPVHLGHRLPADGR-FRIYVFA-GD--IAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDS 74 (167)
T ss_pred CCcCCCceEEEe--cCCCCHhHhhhccCCCC-EEEEEEc-CC--CCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCC
Confidence 667888887744 35667777653 566 7887776 43 23344445555555554221
Q ss_pred CcEEEEEeCCCHH-----HHHHHHHHhhhcCCCCCcccceEEcCC------hHHHHHhCCccCCCCccceEEEEEcCCCc
Q 024201 142 NTEILGVSTDSVF-----SHLAWVQTDRKSGGLGDLKYPLIADIT------KSISKSYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 142 gv~vv~VS~d~~~-----~~~~~~~~~~~~~~~~~~~f~~l~D~~------~~~~~~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
=++++.|...... ++...........+ ..-+.+..|.. +...+.||+... ....+||-+||-
T Consensus 75 ~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~gv~~~-----~g~vvvvRPDgy 147 (167)
T cd02979 75 VFDVVTIHAAPRREIELLDLPAVLRPFGEKKG--WDYEKIYADDDSYHEGHGDAYEKYGIDPE-----RGAVVVVRPDQY 147 (167)
T ss_pred cEEEEEEecCCccccchhhCcHhhcCCCCccc--cceeeEEecCccccCCcccHHHhhCCCCC-----CCCEEEECCCCe
Confidence 1567776554221 11122211101101 11123455543 568899997632 345899999998
Q ss_pred EEEEE
Q 024201 211 IQHST 215 (271)
Q Consensus 211 V~~~~ 215 (271)
|-.+.
T Consensus 148 Vg~~~ 152 (167)
T cd02979 148 VALVG 152 (167)
T ss_pred EEEEe
Confidence 87763
No 223
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=74.66 E-value=3.9 Score=28.95 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=32.0
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 114 FFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 114 ~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.||....|+.|......|.++..+ .++.+..|..+.. .+|.+.| +...|++.
T Consensus 3 ~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~d---~~l~~~Y-------~~~IPVl~ 54 (81)
T PF05768_consen 3 TLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDED---PELFEKY-------GYRIPVLH 54 (81)
T ss_dssp EEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTTT---HHHHHHS-------CTSTSEEE
T ss_pred EEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCCC---HHHHHHh-------cCCCCEEE
Confidence 344478899998777777664433 3588888887742 2365655 44555554
No 224
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=74.63 E-value=9.3 Score=35.98 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=26.3
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~ 162 (271)
|++|- .+|||.|.....-|. ++|+.+--|.+|......++.++
T Consensus 4 V~vys-~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~~~~~~~~~~ 46 (410)
T PRK12759 4 VRIYT-KTNCPFCDLAKSWFG-------ANDIPFTQISLDDDVKRAEFYAE 46 (410)
T ss_pred EEEEe-CCCCHHHHHHHHHHH-------HCCCCeEEEECCCChhHHHHHHH
Confidence 34444 799999987655444 35787777777654443444333
No 225
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=74.02 E-value=41 Score=26.37 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=30.3
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEE-EeCC
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG-VSTD 151 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~-VS~d 151 (271)
+.+||-|. -.|-|.|..+-.-|.+..+.+. ++.+|. +..|
T Consensus 24 rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vs--nfa~Iylvdid 64 (142)
T KOG3414|consen 24 RLVVIRFG-RDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDID 64 (142)
T ss_pred eEEEEEec-CCCCchHhhHHHHHHHHHHHHh--hceEEEEEecc
Confidence 47888888 6999999999888999888876 444443 4444
No 226
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=73.69 E-value=6.3 Score=29.24 Aligned_cols=42 Identities=5% Similarity=-0.150 Sum_probs=25.1
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC----CHHHHHHHHHHh
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----SVFSHLAWVQTD 163 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d----~~~~~~~~~~~~ 163 (271)
+|...+|+.|+....-|.+ +|+.+..|.+. +..++.+|.+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 3 IYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 3447889999877555543 46555555442 244556666554
No 227
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.46 E-value=5.4 Score=34.18 Aligned_cols=75 Identities=9% Similarity=0.173 Sum_probs=49.5
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+=||.|| +.|.|-|....|-+.++..+|...++.+=-|... .-.+++..|+
T Consensus 146 ~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG----------------------------rfpd~a~kfr 196 (265)
T KOG0914|consen 146 YWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG----------------------------RFPDVAAKFR 196 (265)
T ss_pred EEEEEEE-eecChhhcccccccHHHHHHhCCCCCcccceeec----------------------------cCcChHHhee
Confidence 5688999 8999999999999999988886544433222111 1134666777
Q ss_pred CccCCCCccceEEEEEcCCCcEEEE
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
|......-..|+++|. ++|+-+.+
T Consensus 197 is~s~~srQLPT~ilF-q~gkE~~R 220 (265)
T KOG0914|consen 197 ISLSPGSRQLPTYILF-QKGKEVSR 220 (265)
T ss_pred eccCcccccCCeEEEE-ccchhhhc
Confidence 7643322256877777 67776665
No 228
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=73.22 E-value=9.2 Score=28.95 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=34.8
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~ 150 (271)
.-.+++|.+...-|+-|+. |+.|+ -..+....+++++.|+++|.++.
T Consensus 27 ~g~F~~y~~~~~elvgf~~---CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 27 KGAFARYDDEDVELVGFFT---CGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred cCccccCCCCCeEEEEEee---CCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 3467778764366777774 77777 56777778888888999999875
No 229
>PRK10026 arsenate reductase; Provisional
Probab=73.15 E-value=28 Score=27.69 Aligned_cols=92 Identities=8% Similarity=0.009 Sum_probs=51.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEe--CC--CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccC
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVS--TD--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIP 193 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS--~d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~ 193 (271)
...|..|+..+.-|.+. |+.+..+. -+ +.+++..|++.. +.++.-+....+..++.++....
T Consensus 9 ~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~-------g~~~~~lint~~~~yr~L~~~~~ 74 (141)
T PRK10026 9 NPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADM-------GISVRALLRKNVEPYEELGLAED 74 (141)
T ss_pred CCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhC-------CCCHHHHHHcCCchHHHcCCCcc
Confidence 56799998877666543 55444443 33 356778888866 32222222234455555554422
Q ss_pred C------------CCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 194 D------------QGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 194 ~------------~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
. .+.-+.+=+|++.+|.++.+ ..+.++..|
T Consensus 75 ~ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R---------p~e~v~~~l 116 (141)
T PRK10026 75 KFTDDQLIDFMLQHPILINRPIVVTPLGTRLCR---------PSEVVLEIL 116 (141)
T ss_pred CCCHHHHHHHHHhCccceeCcEEEcCCCeEEEC---------CHHHHHHHh
Confidence 1 11224555788888877765 455666655
No 230
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=71.66 E-value=14 Score=30.16 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=53.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccc---cCCcEEEEEEecCCCCCChHHHHHHHHHHHH-------HHHhcC-----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY---IGKKYVILFFYPLDFTFVCPTEITAFSDRYT-------EFEKLN----- 142 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~---~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~-------~~~~~g----- 142 (271)
+.+|..+|+..+.- -.||+++.|.+. .|+ +-|++|-.-.-.+.+...+..|.+..+ .|..++
T Consensus 30 l~~G~Rlp~~~v~r--~aD~~p~~l~~~l~sdGr-fri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 30 LRPGRRLPSAKVVR--HADGNPVHLQDDLPSDGR-FRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp S-TTCB----EEEE--TTTTEEEEGGGG--SSS--EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred cCCccccCCceEEE--EcCCCChhHhhhcccCCC-EEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 88999999999873 467789999864 677 788888743333344334444444332 332222
Q ss_pred -cEEEEEeCCCH--HHHHHHHHHhhhcCCCCC-cccceEEcC------ChHHHHHhCCc
Q 024201 143 -TEILGVSTDSV--FSHLAWVQTDRKSGGLGD-LKYPLIADI------TKSISKSYGVL 191 (271)
Q Consensus 143 -v~vv~VS~d~~--~~~~~~~~~~~~~~~~~~-~~f~~l~D~------~~~~~~~ygv~ 191 (271)
++++.|...+. .++.++-+-.+...+..+ ..+.++.|. .+.+.+.|||.
T Consensus 107 ~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 107 VFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp SEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred eeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCC
Confidence 78888866431 122222221111101111 234566664 37888899975
No 231
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=70.56 E-value=9.5 Score=31.32 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHh
Q 024201 127 EITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (271)
Q Consensus 127 ~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~ 163 (271)
-.|++.+...+++++|+.++-||-+.......|.+..
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l 83 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL 83 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc
Confidence 4678889999999999999999999988888888865
No 232
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=70.42 E-value=73 Score=31.79 Aligned_cols=143 Identities=11% Similarity=0.077 Sum_probs=73.9
Q ss_pred CCCCCCCCCeEEeeecCCCceeEeccc-c--cCCcEEEEEEecCCCCCChHHHHHHHHHHHH--------HHHhcC----
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSD-Y--IGKKYVILFFYPLDFTFVCPTEITAFSDRYT--------EFEKLN---- 142 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd-~--~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~--------~~~~~g---- 142 (271)
+.+|..+|++.+... .+++++.|.+ + .|+ +.||.|-...-.+.....+..+.+... .|...+
T Consensus 463 ~~~G~r~~~~~v~~~--~d~~~~~l~~~~~~~g~-~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (634)
T PRK08294 463 FPIGKRFHSAPVIRL--ADAKPVHLGHAATADGR-WRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADID 539 (634)
T ss_pred CCCceeCCCCceeec--cCCCchhHhhhcccCCC-EEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCC
Confidence 789999999998744 4455776654 3 455 888877732222344444444444331 111111
Q ss_pred --cEEEEEeCCCH--HHHH---HHHHHhhhcCCCCCcccceEEc--CChHHHHHhCCccCCCCccceEEEEEcCCCcEEE
Q 024201 143 --TEILGVSTDSV--FSHL---AWVQTDRKSGGLGDLKYPLIAD--ITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 143 --v~vv~VS~d~~--~~~~---~~~~~~~~~~~~~~~~f~~l~D--~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~ 213 (271)
++++.|..... .++. ..........+..++ +.+..| ......+.|||..+ .-..+||-+||-|-.
T Consensus 540 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~-----~g~~vvvRPD~~v~~ 613 (634)
T PRK08294 540 AVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDY-EKVFCADLSGADIFDLRGIDRD-----RGAVVVVRPDQYVAN 613 (634)
T ss_pred cEEEEEEEecCCCCccchhhCcHhhCCcccccCccch-hheecCCCchhhHHHhhCCCCC-----ceeEEEECCCCceEE
Confidence 56666654421 1111 222211111111111 123444 22467889997632 245799999998887
Q ss_pred EEeccCCCCCCHHHHHHHHHH
Q 024201 214 STINNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 214 ~~~~~~~~~~~~~e~l~~l~~ 234 (271)
+. .. .+++++-+.+..
T Consensus 614 ~~--~l---~~~~~l~~yf~~ 629 (634)
T PRK08294 614 VL--PL---DAHAELAAFFAG 629 (634)
T ss_pred Ee--cC---ccHHHHHHHHHH
Confidence 63 21 245555555543
No 233
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=70.22 E-value=27 Score=26.28 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEc
Q 024201 127 EITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 206 (271)
Q Consensus 127 ~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID 206 (271)
...-|++..+++++.+..=+.|++++.....+..+- -...+++.....++++.+|+. ++| +||.
T Consensus 36 S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l--------apgl~l~P~sgddLa~rL~l~------hYP--vLit 99 (105)
T TIGR03765 36 SRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL--------APGLPLLPVSGDDLAERLGLR------HYP--VLIT 99 (105)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCcccCCCHHHHHHHhCCC------ccc--EEEe
Confidence 344577788888887877778899987776654433 235567777778999999998 766 5676
Q ss_pred CCC
Q 024201 207 KEG 209 (271)
Q Consensus 207 ~~G 209 (271)
.+|
T Consensus 100 ~tg 102 (105)
T TIGR03765 100 ATG 102 (105)
T ss_pred cCc
Confidence 666
No 234
>PHA03075 glutaredoxin-like protein; Provisional
Probab=68.56 E-value=4.5 Score=30.98 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=29.1
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEE
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~V 148 (271)
.++|.|. -..|+.|......|.++.++|.=..|+++.+
T Consensus 3 ~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 3 KTLILFG-KPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred ceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 5778887 7889999988888877777776555666664
No 235
>PTZ00062 glutaredoxin; Provisional
Probab=66.59 E-value=16 Score=30.92 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=25.0
Q ss_pred cccccCCcEEEEEEec---CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 102 LSDYIGKKYVILFFYP---LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 102 Lsd~~gkk~vvL~F~~---~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+.++-..++++|+--. ..+||+|+....-|. +.|+.+.-+.++.
T Consensus 106 v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~~ 152 (204)
T PTZ00062 106 IERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIFE 152 (204)
T ss_pred HHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcCC
Confidence 3344444467777662 247888876544444 3467666666654
No 236
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=66.52 E-value=32 Score=27.43 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEc
Q 024201 127 EITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 206 (271)
Q Consensus 127 ~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID 206 (271)
...-|++..+++++.+..=+.|++++.+.+++..+- -...+++.....++++.+++. ++| +||.
T Consensus 74 S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~l--------apgl~l~P~sgddLA~rL~l~------HYP--vLIt 137 (142)
T PF11072_consen 74 SRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQL--------APGLPLLPVSGDDLARRLGLS------HYP--VLIT 137 (142)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCeecCCCHHHHHHHhCCC------ccc--EEee
Confidence 344567778888887877788999998777665443 235567777778999999999 776 5666
Q ss_pred CCC
Q 024201 207 KEG 209 (271)
Q Consensus 207 ~~G 209 (271)
.+|
T Consensus 138 ~~g 140 (142)
T PF11072_consen 138 ATG 140 (142)
T ss_pred cCC
Confidence 655
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=64.71 E-value=19 Score=34.32 Aligned_cols=66 Identities=11% Similarity=-0.048 Sum_probs=47.5
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d 151 (271)
-++.+-.+.+. -.+++.|+|.+++|..-+|| .. |+ -.+|...+...+...+++.++||-||-|..+
T Consensus 272 Ree~L~rL~v~---l~~~~~v~l~~LRg~~RvvI-vA-G~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 272 RDETLSRLPVR---LSTNRIVELVQLRDITRPVI-LA-GT-KESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred hhhhhccceEe---ccCCCEEeHHHhcCcceEEE-EE-CC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 34445555554 23466999999999833444 44 34 3578888888988999999999999998775
No 238
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=63.43 E-value=28 Score=34.61 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=46.3
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC---CHHHHHHHHHHhhhcCCCCCcccc
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD---SVFSHLAWVQTDRKSGGLGDLKYP 175 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d---~~~~~~~~~~~~~~~~~~~~~~f~ 175 (271)
+++-+|..|. ++=+...+|.. ..+.++|.+.++.|.++|..|.- ..+..+.|+......+.. -..-|
T Consensus 540 TITKSDvLGh---~lp~iGkDWTh------~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~-LPdGP 609 (738)
T KOG2116|consen 540 TITKSDVLGH---VLPMIGKDWTH------TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKK-LPDGP 609 (738)
T ss_pred ceEhhhhhhh---hhhhhcCcchh------hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCcc-CCCCC
Confidence 4455555554 23333355642 35778999999999999998763 345556777766554422 23446
Q ss_pred eEEcCChHHH
Q 024201 176 LIADITKSIS 185 (271)
Q Consensus 176 ~l~D~~~~~~ 185 (271)
++.-+++-++
T Consensus 610 ViLSPd~lf~ 619 (738)
T KOG2116|consen 610 VILSPDSLFA 619 (738)
T ss_pred EEeCCCcchH
Confidence 6666664443
No 239
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=63.15 E-value=61 Score=24.57 Aligned_cols=67 Identities=9% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCcEEE--EEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcC
Q 024201 130 AFSDRYTEFEKLNTEIL--GVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDK 207 (271)
Q Consensus 130 ~L~~~~~~~~~~gv~vv--~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~ 207 (271)
.|.++..+..+.|+.+| |+.-++.....++.++.....+ ..-.+.- |..+.++|+|. ..|++++...
T Consensus 12 ~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~---~~~~v~I--dP~~F~~y~I~------~VPa~V~~~~ 80 (113)
T PF09673_consen 12 SLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDD---PCPGVQI--DPRLFRQYNIT------AVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccC---CCcceeE--ChhHHhhCCce------EcCEEEEEcC
Confidence 45555555555576655 4666655555555555533221 1122333 57799999999 8999988865
No 240
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=62.74 E-value=71 Score=24.80 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=52.1
Q ss_pred EEEEecCCCCC--Ch----HHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHH
Q 024201 112 ILFFYPLDFTF--VC----PTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (271)
Q Consensus 112 vL~F~~~t~Cp--~C----~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 185 (271)
|-+|=|+-+|. +| -.++.++....+.++++|++|.=.+... +..+|.+.. . -.++-
T Consensus 4 i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~--~P~aF~~n~-------~---------V~~~L 65 (123)
T PF06953_consen 4 IEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQ--NPQAFVENP-------E---------VNQLL 65 (123)
T ss_dssp EEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT---TTHHHHSH-------H---------HHHHH
T ss_pred eEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEcccc--CHHHHHhCH-------H---------HHHHH
Confidence 55677788785 56 4778999999999999999988777765 234454432 0 02333
Q ss_pred HHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 186 KSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 186 ~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
+.-|.. .+|-+ || ||+|+..-.++ ..+|+.+.+.
T Consensus 66 ~~~G~e------~LPit-lV--dGeiv~~G~YP-----t~eEl~~~~~ 99 (123)
T PF06953_consen 66 QTEGAE------ALPIT-LV--DGEIVKTGRYP-----TNEELAEWLG 99 (123)
T ss_dssp HHH-GG------G-SEE-EE--TTEEEEESS--------HHHHHHHHT
T ss_pred HHcCcc------cCCEE-EE--CCEEEEecCCC-----CHHHHHHHhC
Confidence 444554 56654 56 69999884332 4566666654
No 241
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=61.91 E-value=26 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=19.7
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
|++|- -+|||+|...-.-|.+ .++....|-.|.
T Consensus 16 VVifS-Ks~C~~c~~~k~ll~~-------~~v~~~vvELD~ 48 (104)
T KOG1752|consen 16 VVIFS-KSSCPYCHRAKELLSD-------LGVNPKVVELDE 48 (104)
T ss_pred EEEEE-CCcCchHHHHHHHHHh-------CCCCCEEEEccC
Confidence 45666 6999999873333322 356555555554
No 242
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.40 E-value=16 Score=31.26 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=31.5
Q ss_pred CCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcC
Q 024201 95 QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN 142 (271)
Q Consensus 95 ~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g 142 (271)
.++..+.+-+..++ ++++.|+ ---||+|....+.+.+.+-...+..
T Consensus 72 ~~~~~~~~G~~~~~-v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~ 117 (244)
T COG1651 72 PDGKDVVLGNPYAP-VTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVR 117 (244)
T ss_pred CCCCcccccCCCCC-ceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCc
Confidence 34445555555555 7788888 4559999998999988776665443
No 243
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.13 E-value=1e+02 Score=28.01 Aligned_cols=115 Identities=10% Similarity=0.154 Sum_probs=68.7
Q ss_pred cEEEEEEecC----CCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCccc-ceEEcCChH
Q 024201 109 KYVILFFYPL----DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKY-PLIADITKS 183 (271)
Q Consensus 109 k~vvL~F~~~----t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f-~~l~D~~~~ 183 (271)
++.+|.+|.+ ..|..|..+..+++-+.+-+...+-. .|. .++=| .+=.|...+
T Consensus 60 Nys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~-----sn~-----------------tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 60 NYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPF-----SNG-----------------TKLFFCMVDYDESPQ 117 (331)
T ss_pred CeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCC-----CCc-----------------ceEEEEEEeccccHH
Confidence 3666666644 46889988878887777776543211 000 01112 122344578
Q ss_pred HHHHhCCccCCCCccceEEEEEcC-CCcEEEEEe-ccCCCCCCHHHHHHHHHHHHHhhhCCCcccCCCCCC
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDK-EGVIQHSTI-NNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKP 252 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~-~G~V~~~~~-~~~~~~~~~~e~l~~l~~l~~~~~~~~~~~p~~~~~ 252 (271)
+.+.+++. ..|+.+++.+ .|+.++... .....+..+|++++.++..-.+.-. ++..|-+|.+
T Consensus 118 ~Fq~l~ln------~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~-si~rPp~~s~ 181 (331)
T KOG2603|consen 118 VFQQLNLN------NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR-SIQRPPNYSK 181 (331)
T ss_pred HHHHhccc------CCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee-eeecCCcccc
Confidence 89999999 8999999955 466664322 2223445577787777755433332 3555777765
No 244
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=6.8 Score=33.60 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=33.8
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
+++ ..++.|| +.||..|.....-+..+.+.+ ++++++-+..+..
T Consensus 16 ~~~-~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~ 59 (227)
T KOG0911|consen 16 KGK-LLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEF 59 (227)
T ss_pred ccc-hhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhh
Confidence 455 7899999 999999998877777777776 4677776655543
No 245
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=56.35 E-value=30 Score=30.64 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=55.3
Q ss_pred CCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHH
Q 024201 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWV 160 (271)
Q Consensus 81 G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~ 160 (271)
=+.+|-|++. |.+|..+-.+.-.|++.+-+++++ --.-...+..+++...++. ++++|+.|+.+....+.
T Consensus 79 L~~VPVFtIt---n~~G~pvl~s~~~~~~~~gvf~s~---qedA~afL~~lk~~~p~l~-~~~kV~pvsL~~vYkl~--- 148 (270)
T TIGR00995 79 LAGTSVFTVS---NAQNEFVLASDNDGEKSIGLLCFR---QEDAEAFLAQLRKRKPEVG-SQAKVVPITLDQVYKLK--- 148 (270)
T ss_pred hcCCceEEEE---cCCCCeEEEECCCCCceEEEEECC---HHHHHHHHHHHHhhCcccc-CCceEEEEEHHHHHHHh---
Confidence 3468999997 888988888876676444443331 0113333444544444443 47999999998755431
Q ss_pred HHhhhcCCCCCcccceEEcCChHHHHHhCC
Q 024201 161 QTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (271)
Q Consensus 161 ~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv 190 (271)
+ . ++.|.++.|.. ++..+.++
T Consensus 149 ~-e-------~l~F~fiP~~~-qV~~A~~l 169 (270)
T TIGR00995 149 V-E-------GIGFRFLPDPA-QIKNALEL 169 (270)
T ss_pred h-c-------CccEEEeCCHH-HHHHHHHH
Confidence 1 1 47888888764 34444443
No 246
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=55.30 E-value=37 Score=26.01 Aligned_cols=64 Identities=6% Similarity=-0.049 Sum_probs=40.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHhcCcEE--EEEeCC--CHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHh
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI--LGVSTD--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~v--v~VS~d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~y 188 (271)
-+|+ ...|..|+..+.-| ++.|+++ +-+..+ +.+.+.+|++.. +.+|.-+....+...+.+
T Consensus 4 tiy~-~p~C~t~rka~~~L-------~~~gi~~~~~~y~~~~~s~~eL~~~l~~~-------g~~~~~li~t~~~~~r~L 68 (117)
T COG1393 4 TIYG-NPNCSTCRKALAWL-------EEHGIEYTFIDYLKTPPSREELKKILSKL-------GDGVEELINTRGTTYREL 68 (117)
T ss_pred EEEe-CCCChHHHHHHHHH-------HHcCCCcEEEEeecCCCCHHHHHHHHHHc-------CccHHHHHHhccchHHHc
Confidence 3444 56688887665444 3446554 333333 456778999887 555666666678888888
Q ss_pred CCc
Q 024201 189 GVL 191 (271)
Q Consensus 189 gv~ 191 (271)
|..
T Consensus 69 ~~~ 71 (117)
T COG1393 69 NLD 71 (117)
T ss_pred CCc
Confidence 844
No 247
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=54.37 E-value=80 Score=29.89 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=24.8
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
..++..|-+. .+|..|+|+.+|+-+.+..+-
T Consensus 67 ~qFs~IYp~v------~vPs~ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 67 TQFSAIYPYV------SVPSIFFIGFSGTPLEVITGF 97 (506)
T ss_pred hhhhhhcccc------cccceeeecCCCceeEEeecc
Confidence 4566667766 899999999999999986543
No 248
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=53.86 E-value=75 Score=26.83 Aligned_cols=81 Identities=11% Similarity=0.185 Sum_probs=49.6
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEe-CCCHHHHHHHHHHhhhcCCCCCcccc------eEEcCChH
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVS-TDSVFSHLAWVQTDRKSGGLGDLKYP------LIADITKS 183 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS-~d~~~~~~~~~~~~~~~~~~~~~~f~------~l~D~~~~ 183 (271)
.+.+|. -..|+.|...+..+.. ....++|..|- -.+...+..|+..+ +++-. +....+.-
T Consensus 111 rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~-------~Idp~~V~~~~ITLNHD~G 177 (200)
T TIGR03759 111 RLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRH-------QIDPAKVRSRQITLNHDNG 177 (200)
T ss_pred eEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHc-------CCCHHHeecCeeEEecCcc
Confidence 466677 4889999988777743 23467777775 45667889999988 22211 11222344
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCc
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGV 210 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~ 210 (271)
-+..||+. | .+|..+ ...+|.
T Consensus 178 ~w~~lg~~----g-~lP~~l-~q~~g~ 198 (200)
T TIGR03759 178 RWLQLGLQ----G-QLPAVV-QQVNGG 198 (200)
T ss_pred hHHHccCC----C-CCCEEE-EecCCc
Confidence 46667764 2 367664 455553
No 249
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=52.89 E-value=31 Score=23.63 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=24.8
Q ss_pred CCceeEecccccCCcEEEEEEecCCCCCChHHHHHHH
Q 024201 95 QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF 131 (271)
Q Consensus 95 ~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L 131 (271)
.+|..+.+-++++. .+.|-|- |+ |..|......|
T Consensus 14 ~dGGdv~lv~v~~~-~V~V~l~-Ga-C~gC~~s~~Tl 47 (68)
T PF01106_consen 14 SDGGDVELVDVDDG-VVYVRLT-GA-CSGCPSSDMTL 47 (68)
T ss_dssp HTTEEEEEEEEETT-EEEEEEE-SS-CCSSCCHHHHH
T ss_pred hcCCcEEEEEecCC-EEEEEEE-eC-CCCCCCHHHHH
Confidence 35668999999998 6777776 67 77886554444
No 250
>PRK12359 flavodoxin FldB; Provisional
Probab=52.18 E-value=64 Score=26.48 Aligned_cols=19 Identities=0% Similarity=0.011 Sum_probs=10.5
Q ss_pred EEEEcCCCcEEEEEeccCC
Q 024201 202 LFIIDKEGVIQHSTINNLA 220 (271)
Q Consensus 202 ~~lID~~G~V~~~~~~~~~ 220 (271)
.-++|..|+.+..-+...+
T Consensus 130 ~a~~~~~~~f~gl~lD~~n 148 (172)
T PRK12359 130 KPLTADGQLFVGLALDEVN 148 (172)
T ss_pred eeeEcCCCEEEEEEEcCCC
Confidence 3456544557777655433
No 251
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=51.07 E-value=29 Score=25.88 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=26.7
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHHHHHHHHHh
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTD 163 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~~~~~~~~~ 163 (271)
+|...+|+.|+....-|.+ +|+.+-.+.. + +.+++.+|.+..
T Consensus 3 iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 3 LYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 3447889999986655543 4555555443 3 456778888765
No 252
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.05 E-value=61 Score=32.45 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=53.7
Q ss_pred cCCcEEEEEEecCCCCCChHHHH------HHHHHHHHHHHhcCcEEEEEeCCCHH--HHHHHHHHhhhcCCCCCcccceE
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEI------TAFSDRYTEFEKLNTEILGVSTDSVF--SHLAWVQTDRKSGGLGDLKYPLI 177 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l------~~L~~~~~~~~~~gv~vv~VS~d~~~--~~~~~~~~~~~~~~~~~~~f~~l 177 (271)
.+| +++|... ++||.-|.-+. |++.++. |-.+|.|-||..+ ++.+..
T Consensus 42 edk-PIflSIG-ys~CHWChVM~~ESf~d~eiA~~l------N~~FV~IKVDREERPDvD~~Y----------------- 96 (667)
T COG1331 42 EDK-PILLSIG-YSTCHWCHVMAHESFEDPEIAAIL------NENFVPVKVDREERPDVDSLY----------------- 96 (667)
T ss_pred hCC-CEEEEec-cccccchHHHhhhcCCCHHHHHHH------HhCceeeeEChhhccCHHHHH-----------------
Confidence 455 9999998 89999997543 2333333 2357777777522 111100
Q ss_pred EcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCC---CC-CCHHHHHHHHH
Q 024201 178 ADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLA---IG-RSVDETLRTLQ 233 (271)
Q Consensus 178 ~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~---~~-~~~~e~l~~l~ 233 (271)
..+++..... | ..|-++++-|||+..+.-.+-.. .+ ....++|..|.
T Consensus 97 ----m~~~q~~tG~----G-GWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~ 147 (667)
T COG1331 97 ----MNASQAITGQ----G-GWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIR 147 (667)
T ss_pred ----HHHHHHhccC----C-CCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHH
Confidence 2233333222 2 57999999999999888544211 11 24566666554
No 253
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=48.82 E-value=30 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=22.5
Q ss_pred cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 024201 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE 139 (271)
Q Consensus 106 ~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~ 139 (271)
.|| +.| +|..+.|||+|-.+.=.|-.....|.
T Consensus 57 ~Gk-~~v-~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGK-PEV-IFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCe-eEE-EEEecccCccchhhHHHHHHHHHhcC
Confidence 465 444 45558999999988666666666665
No 254
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.68 E-value=41 Score=23.81 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=15.6
Q ss_pred EEEecCCCCCChHHHHHHHHHHH
Q 024201 113 LFFYPLDFTFVCPTEITAFSDRY 135 (271)
Q Consensus 113 L~F~~~t~Cp~C~~~l~~L~~~~ 135 (271)
..|+ +..||.|......|.++.
T Consensus 5 ~lfg-sn~Cpdca~a~eyl~rl~ 26 (85)
T COG4545 5 KLFG-SNLCPDCAPAVEYLERLN 26 (85)
T ss_pred eeec-cccCcchHHHHHHHHHcC
Confidence 3456 788999988776666543
No 255
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=45.39 E-value=1.5e+02 Score=23.24 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCcEEE--EEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcC
Q 024201 130 AFSDRYTEFEKLNTEIL--GVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDK 207 (271)
Q Consensus 130 ~L~~~~~~~~~~gv~vv--~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~ 207 (271)
.|.++..+..+.|+.+| |+--++.....+..+......+ ...+. -|..+.++|+|. ..|+++++..
T Consensus 13 ~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~~~----~~~v~--IdP~lF~~f~I~------~VPa~V~~~~ 80 (130)
T TIGR02742 13 LLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKDGG----KSGVQ--IDPQWFKQFDIT------AVPAFVVVKD 80 (130)
T ss_pred HHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhcCC----CCcEE--EChHHHhhcCce------EcCEEEEECC
Confidence 45555555554565544 4555554444444444422221 12232 357899999999 8999988865
Q ss_pred CC
Q 024201 208 EG 209 (271)
Q Consensus 208 ~G 209 (271)
++
T Consensus 81 ~~ 82 (130)
T TIGR02742 81 GL 82 (130)
T ss_pred CC
Confidence 43
No 256
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=45.06 E-value=61 Score=20.32 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q 024201 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTL 232 (271)
Q Consensus 198 ~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l 232 (271)
.....+|+|++|+++... ...++++.+
T Consensus 29 ~~~~~~V~d~~~~~~G~i--------s~~dl~~~l 55 (57)
T PF00571_consen 29 GISRLPVVDEDGKLVGII--------SRSDLLKAL 55 (57)
T ss_dssp TSSEEEEESTTSBEEEEE--------EHHHHHHHH
T ss_pred CCcEEEEEecCCEEEEEE--------EHHHHHhhh
Confidence 456689999999999985 345666554
No 257
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=44.61 E-value=2e+02 Score=24.52 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=55.3
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.|+--|+..=...+++|- |. =..++.-+.+.+... ..+.+|.+.-+..+..++| .-++..
T Consensus 110 ~vNPLd~v~~~~~LvfiD-gd----D~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~~l-------------~~~vYf 169 (209)
T PRK13738 110 VVNPLQYVPFNQTLYFIN-GD----DPAQVAWMKRQTPPT--LESKIILVQGSIPEMSKAL-------------DSRIYF 169 (209)
T ss_pred eECcccccCCCceEEEEe-CC----CHHHHHHHHHhhhcc--CCceEEEECCCHHHHHHHh-------------CCceEE
Confidence 444444333223555554 33 355665555443322 1577888776654433332 345778
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
|..+.+++.||+. ++|..+---.+|+...+.-
T Consensus 170 dQ~G~Lt~rF~I~------~VPAvV~~~q~G~~l~I~E 201 (209)
T PRK13738 170 DQNGVLCQRFGID------QVPARVSAVPGGRFLKVEF 201 (209)
T ss_pred cCcchHHHhcCCe------eeceEEEEcCCCCEEEEEE
Confidence 8899999999999 8998764237888877753
No 258
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=44.29 E-value=1.2e+02 Score=25.22 Aligned_cols=66 Identities=6% Similarity=-0.069 Sum_probs=46.6
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHH
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~ 154 (271)
+.+.+..|++.+. . +--+-..|.|+ ++ |...-|-..+.....|.+.+++++..|+.++....=-+.
T Consensus 8 V~i~~~~p~i~~D----l--rYat~~NF~g~-~i----Y~~~~c~l~~~aA~aL~~a~~~l~~~G~~L~I~D~yRP~ 73 (184)
T PRK10178 8 VEITVAFHGVEID----L--KYATADNLTGK-PI----YREARCLLHKDAEAALRKAVSIAQLAGLTLRIYDAYRPQ 73 (184)
T ss_pred EEeeecCCCCEEE----e--eeccCCCcCCC-cc----ccCCeEEECHHHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 4456667888763 2 24456678898 33 545556666788889999999999999998887665443
No 259
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=44.18 E-value=61 Score=28.17 Aligned_cols=93 Identities=15% Similarity=0.296 Sum_probs=52.3
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--CCHHHHHHHHHHhhhcCCCCCcccceEEcC----ChH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--DSVFSHLAWVQTDRKSGGLGDLKYPLIADI----TKS 183 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~----~~~ 183 (271)
..||..|..-.|.-|+..-..|.++.++ -+ ||++|. |-= +-.-|.+. +.... ...
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~---~~--vlALsyhVdYW-dYlGWkDt-------------lar~enTeRQ~a 102 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD---PG--VLALSYHVDYW-DYLGWKDT-------------LARKENTERQRA 102 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC---CC--EEEEEEeeccc-ccCCcccc-------------ccchhhhHHHHH
Confidence 4677777788999999888777776643 23 666554 420 00112221 11111 233
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
..+.|+.. ++.+|..|| ||++... +.+..++-+.|++.
T Consensus 103 Y~~a~g~~----~vyTPQavv---nGr~~~~-------Gad~~~i~~~i~a~ 140 (261)
T COG5429 103 YARAFGAR----GVYTPQAVV---NGRVHAN-------GADPGAIEDAIAAM 140 (261)
T ss_pred HHHhhccC----CCCCchhee---echhhhc-------CCCHHHHHHHHHHh
Confidence 44445444 667888866 5776554 34556666666554
No 260
>PHA02087 hypothetical protein
Probab=43.61 E-value=1.1e+02 Score=21.16 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=33.6
Q ss_pred EEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 145 ILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 145 vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
|+-|-.-+++..++|++..- ++..|.-. --.+++..|+-. .+-.+.|+|.||+++..
T Consensus 3 i~rvkfks~ehrk~fa~s~~-----yn~~f~k~--mpdefw~~~d~n------k~v~y~lvdsdg~~iel 59 (83)
T PHA02087 3 IVRVKFKSPEHRKAFAESEW-----YNEEFEKF--MPDEFWAKFDPN------KLVQYMLVDSDGVKIEL 59 (83)
T ss_pred eEEEEcCCHHHHHHHHhhhH-----HHHHHHhh--CcHHHHhcCCCc------cceeEEEEcCCCcEEEC
Confidence 45566666666666666530 01111100 124667666655 45678999999999887
No 261
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=39.58 E-value=1.7e+02 Score=23.18 Aligned_cols=23 Identities=9% Similarity=0.119 Sum_probs=15.5
Q ss_pred EEEEEEecCCCCCChHHHHHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSD 133 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~ 133 (271)
+-.+++| -..|+.|..+...|.+
T Consensus 8 p~~vvly-DG~C~lC~~~vrfLi~ 30 (137)
T COG3011 8 PDLVVLY-DGVCPLCDGWVRFLIR 30 (137)
T ss_pred CCEEEEE-CCcchhHHHHHHHHHH
Confidence 4556666 3459999987666654
No 262
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=38.89 E-value=45 Score=22.71 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCcEEEEEeccCCCCC-CHHHHHHHHHH
Q 024201 199 LRGLFIIDKEGVIQHSTINNLAIGR-SVDETLRTLQA 234 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~~~~~~~~~~-~~~e~l~~l~~ 234 (271)
.--.|.||+||+|....+-...... --+++++.++.
T Consensus 18 v~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~ 54 (79)
T PF03544_consen 18 VVVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKK 54 (79)
T ss_dssp EEEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC
T ss_pred EEEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHh
Confidence 4557899999999998664333323 34555555554
No 263
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=38.46 E-value=1.1e+02 Score=26.58 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=26.0
Q ss_pred HHHHHHHhcCcEEEEEeCCCHHHHHHHHHHh
Q 024201 133 DRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (271)
Q Consensus 133 ~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~ 163 (271)
..+.++++.|+.||.+|.-+..++..+.+..
T Consensus 30 pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l 60 (274)
T COG3769 30 PVLLELKDAGVPVILCSSKTRAEMLYLQKSL 60 (274)
T ss_pred hHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Confidence 4567788889999999999988888877776
No 264
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=38.44 E-value=1.5e+02 Score=21.54 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=36.1
Q ss_pred CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 142 NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 142 gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
++..+++.+++.+++.++.+...+. .+++....... ++.. .....++.|++|..+..+.
T Consensus 58 ~~~h~~f~v~~~~dl~~~~~~l~~~------G~~~~~~~~~~----~~~~------~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 58 GLNHLGVQVDSAEEVAEAKARAEAA------GLPTFKEEDTT----CCYA------VQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHc------CCeEEccCCcc----cccC------CcceEEEECCCCCEEEEEE
Confidence 5667888888877777777766432 33333322211 1111 2345889999999998864
No 265
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=37.64 E-value=89 Score=22.68 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=34.4
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~ 152 (271)
+|.|.|.|..-|..-..-.-+|.-++..+.+.|.+++..-.++
T Consensus 6 ~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d 48 (88)
T PF15092_consen 6 YVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIED 48 (88)
T ss_pred EEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEecc
Confidence 6778888888888855667788889999998898888876654
No 266
>PHA01548 hypothetical protein
Probab=37.09 E-value=79 Score=24.91 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=26.0
Q ss_pred cceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHhhhCCCcccCCCCCCCC
Q 024201 198 ALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGD 254 (271)
Q Consensus 198 ~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~~~~~~~~~p~~~~~~~ 254 (271)
...+.+|||+||+-.+.. ..-+...|+.+. +++-|++|-++-
T Consensus 103 dalrvvlidKdGkayha~---------SQgVVssIQkii------sIvGpapwt~EP 144 (167)
T PHA01548 103 DALRVVLIDKDGKAYHAV---------SQGVVSSIQKII------SIVGPAPWTDEP 144 (167)
T ss_pred eeeEEEEEccCCCEeeee---------hHHHHHHHHHHH------HHhCCCCCCCCC
Confidence 346689999999987763 233444454443 334578885543
No 267
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=36.87 E-value=94 Score=22.02 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=11.0
Q ss_pred ceEEEEEcCCCcEEEE
Q 024201 199 LRGLFIIDKEGVIQHS 214 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~ 214 (271)
....+++|++|.++..
T Consensus 92 ~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 92 QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEEE-TTS-EEEE
T ss_pred eEEEEEECCCCCEEEe
Confidence 3568999999998764
No 268
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=36.79 E-value=49 Score=22.18 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCcEEEEEeccCCCCCCH-HHHHHHHHHH
Q 024201 199 LRGLFIIDKEGVIQHSTINNLAIGRSV-DETLRTLQAL 235 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~~~~~~~~~~~~-~e~l~~l~~l 235 (271)
.--.|.||++|+|....+-.......+ +..++.++.+
T Consensus 12 v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~ 49 (74)
T TIGR01352 12 VVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKA 49 (74)
T ss_pred EEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhC
Confidence 445799999999998866432212222 3445555544
No 269
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=36.72 E-value=7.9 Score=33.48 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=28.4
Q ss_pred ecccc-cCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEE
Q 024201 101 KLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI 145 (271)
Q Consensus 101 ~Lsd~-~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~v 145 (271)
++.++ .|. -+|.|+ +.|||-|....+.+.....--.+-||.+
T Consensus 33 nw~~~l~ge--wmi~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 33 NWKELLTGE--WMIEFG-APWCPSCSDLIPHLENFATVSLDLGVKV 75 (248)
T ss_pred chhhhhchH--HHHHhc-CCCCccccchHHHHhccCCccCCCceeE
Confidence 34443 444 456777 8999999999998887766544445443
No 270
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=36.05 E-value=1.4e+02 Score=22.39 Aligned_cols=39 Identities=10% Similarity=-0.148 Sum_probs=24.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHHHHHHHHHh
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTD 163 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~~~~~~~~~ 163 (271)
...|..|+..+.-|.+ .|+++..+.. + +.++...|++..
T Consensus 6 ~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 6 NPRCSKSRNTLALLED-------KGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred CCCCHHHHHHHHHHHH-------CCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 5669999887655544 3666555543 3 345667888765
No 271
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=35.29 E-value=1e+02 Score=20.49 Aligned_cols=14 Identities=7% Similarity=-0.178 Sum_probs=10.0
Q ss_pred CCCCCChHHHHHHH
Q 024201 118 LDFTFVCPTEITAF 131 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L 131 (271)
..|||.|.+..-.|
T Consensus 6 ~~~~p~~~rv~~~L 19 (71)
T cd03060 6 FRRCPYAMRARMAL 19 (71)
T ss_pred cCCCcHHHHHHHHH
Confidence 57899997664444
No 272
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=35.12 E-value=1.1e+02 Score=26.27 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=28.4
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEE
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG 147 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~ 147 (271)
.+|++|. |++.|+-..++.-+....+.+...++.+|.
T Consensus 22 ~~v~i~G-GSFdP~H~gHl~ia~~a~~~l~~d~~~~v~ 58 (236)
T PLN02945 22 RVVLVAT-GSFNPPTYMHLRMFELARDALMSEGYHVLG 58 (236)
T ss_pred eEEEEEc-CCCCCCcHHHHHHHHHHHHHHhhcCcEEEE
Confidence 3555555 999999999988887888888776777664
No 273
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=35.08 E-value=29 Score=30.83 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=39.2
Q ss_pred CCCCCeEEeeecCCCceeEecccccC-CcEEEEEEecCCCCCC-hHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH
Q 024201 82 NTAPDFAAEAVFDQEFINVKLSDYIG-KKYVILFFYPLDFTFV-CPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (271)
Q Consensus 82 ~~~Pdf~l~~~~~~~g~~v~Lsd~~g-kk~vvL~F~~~t~Cp~-C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~ 159 (271)
+.+|-|.+. |.+|.++-.+.-.+ .+.+.++|+ |+. -...+..+.+...++ ..+++|+.|+.+....+..
T Consensus 73 ~~VPVF~it---n~~G~p~l~~~~~~~~~~v~~~F~----s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l~~- 143 (274)
T PF04278_consen 73 AGVPVFTIT---NSQGEPVLVSGPDQGGKSVGLFFF----SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQLAQ- 143 (274)
T ss_dssp TTSEEEEEE----TT--B-----TTS--SEEEEEES-----HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHHHH-
T ss_pred cCceEEEEE---CCCCCEEEeccCCCCCceEEEEEe----cHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHHHH-
Confidence 357889987 88898887777652 324544444 221 122233333333333 4579999999986544422
Q ss_pred HHHhhhcCCCCCcccceEEcCC
Q 024201 160 VQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+... ...++.|.++.|..
T Consensus 144 --~~~~--k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 144 --ENKK--KPEGLQFRFVPDPK 161 (274)
T ss_dssp --HTTT---TT-EEEEEE--HH
T ss_pred --Hhhc--CCcCceEEEcCCHH
Confidence 1111 22367888888764
No 274
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=34.89 E-value=1.3e+02 Score=25.42 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=53.2
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
.||+.||.-+ -.-|...-..|..+++.+- +..+|=|.... .+ -++..++
T Consensus 86 kVVcHFY~~~-f~RCKimDkhLe~LAk~h~--eTrFikvnae~-------------------~P---------Flv~kL~ 134 (211)
T KOG1672|consen 86 KVVCHFYRPE-FFRCKIMDKHLEILAKRHV--ETRFIKVNAEK-------------------AP---------FLVTKLN 134 (211)
T ss_pred eEEEEEEcCC-CcceehHHHHHHHHHHhcc--cceEEEEeccc-------------------Cc---------eeeeeee
Confidence 5899999544 5679888888888887765 56777665532 22 2445677
Q ss_pred CccCCCCccceEEEEEcCCCcEEEEEeccCCCC
Q 024201 190 VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIG 222 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~ 222 (271)
|. -+|+..++ +||+.+...+|-...|
T Consensus 135 Ik------VLP~v~l~-k~g~~~D~iVGF~dLG 160 (211)
T KOG1672|consen 135 IK------VLPTVALF-KNGKTVDYVVGFTDLG 160 (211)
T ss_pred ee------EeeeEEEE-EcCEEEEEEeeHhhcC
Confidence 87 78999888 8999888877643333
No 275
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=34.54 E-value=89 Score=24.31 Aligned_cols=36 Identities=14% Similarity=0.322 Sum_probs=24.6
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
...++.+|+. .+|+++| ||+.+.. ..+.+++.+.|+
T Consensus 126 ~~~~~~~~i~------~tPt~~i---nG~~~~~-------~~~~~~l~~~Id 161 (162)
T PF13462_consen 126 SQLARQLGIT------GTPTFFI---NGKYVVG-------PYTIEELKELID 161 (162)
T ss_dssp HHHHHHHT-S------SSSEEEE---TTCEEET-------TTSHHHHHHHHH
T ss_pred HHHHHHcCCc------cccEEEE---CCEEeCC-------CCCHHHHHHHHc
Confidence 4556788888 8899887 8998521 346777777765
No 276
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.24 E-value=1.9e+02 Score=21.22 Aligned_cols=60 Identities=13% Similarity=0.009 Sum_probs=36.6
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
.|+.-+++.+++.+++.++.+...+. .+++....... ..+.. .....++.|++|..+...
T Consensus 67 ~g~~hia~~v~~~~d~~~~~~~l~~~------g~~~~~~~~~~---~~~~~------~~~~~~~~DpdG~~ie~~ 126 (128)
T cd07242 67 PGLHHLAFRAPSREAVDELYARLAKR------GAEILYAPREP---YAGGP------GYYALFFEDPDGIRLELV 126 (128)
T ss_pred cCeeEEEEEcCCHHHHHHHHHHHHHc------CCeEecCCccc---ccCCC------cEEEEEEECCCCcEEEEE
Confidence 35677888888777777777776432 33343322211 01111 345689999999998764
No 277
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=33.95 E-value=1.5e+02 Score=22.03 Aligned_cols=61 Identities=7% Similarity=-0.116 Sum_probs=34.6
Q ss_pred EEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccC
Q 024201 144 EILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNL 219 (271)
Q Consensus 144 ~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~ 219 (271)
.-+++.+++..+..+..+...+. ..++....... ....+. ....++.|+||..+.....+.
T Consensus 61 ~~iaf~v~~~~dv~~~~~~l~~~------G~~~~~~~~~~-~~~~~~--------~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 61 QASGFELRDDDALESAATELEQY------GHEVRRGTAEE-CELRKV--------KAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred EEEEEEECCHHHHHHHHHHHHHc------CCceEEcCHHH-hhcCCc--------ceEEEEECcCCCEEEEEEeee
Confidence 34677787766676666665432 22333322221 111222 234689999999998876543
No 278
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=33.46 E-value=3e+02 Score=23.31 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=51.2
Q ss_pred eEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEE
Q 024201 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (271)
Q Consensus 99 ~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (271)
.|+-=|+..=...+++|- +. =..++.-..+.+.... ++.+|.+.-+..+..++ +.-++..
T Consensus 112 ~vNPLd~v~~~~~LvfiD-g~----D~~Qv~wa~~~~~~~~--~~k~IL~~Gs~~~l~~~-------------l~~~vYf 171 (202)
T TIGR02743 112 RINPLDRVSLSKTLLFFD-AD----DPEQLAWAQQQLPSCP--NVKWILTGGSVNELEKR-------------LDSRIYF 171 (202)
T ss_pred EECCcccccCCceEEEEe-CC----CHHHHHHHHHhcccCC--CeEEEEeCCCHHHHHHH-------------hCCceEE
Confidence 444434332223555554 33 3455555554443321 47777776443222222 2445778
Q ss_pred cCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 179 DITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 179 D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
|..+.+++.||+. ++|+.+- .+|+...+
T Consensus 172 dQ~g~Lt~rF~I~------~VPavV~--q~g~~l~I 199 (202)
T TIGR02743 172 DQHGKLTQKFGIK------HVPARVS--QEGLRLRI 199 (202)
T ss_pred cCCchHhhccCce------eeceEEE--ecCCEEEE
Confidence 8899999999999 8898654 67877665
No 279
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=33.40 E-value=1.3e+02 Score=19.23 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=21.6
Q ss_pred EEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 202 LFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 202 ~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.|.|++||+|.....+- .+..-.++.+.|++.
T Consensus 2 ~~~I~~dG~V~~~v~G~--~G~~C~~~t~~lE~~ 33 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGF--KGSSCLEATAALEEA 33 (48)
T ss_pred EEEECCCcEEEEEEEec--cChhHHHHHHHHHHH
Confidence 37899999999986542 344556666666543
No 280
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=57 Score=28.40 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
.-.+||||+.|+|++.-.+.. +...++.++...+-|
T Consensus 248 ~GyV~L~D~s~kIRW~g~G~a-Tp~Eve~L~~~~k~L 283 (287)
T KOG4614|consen 248 TGYVLLLDKSGKIRWQGFGTA-TPEEVEQLLSCTKLL 283 (287)
T ss_pred eEEEEEEccCceEEEeecCCC-CHHHHHHHHHHHHHH
Confidence 356899999999999965542 223455555555443
No 281
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=33.00 E-value=2e+02 Score=21.67 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=30.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-----------CHHHHHHHHHHh
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-----------SVFSHLAWVQTD 163 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-----------~~~~~~~~~~~~ 163 (271)
.+.|+.-...+..|+..+++| |+++++|+.| +.++..+++.++
T Consensus 23 ~N~~~~~~~~~a~lr~W~er~---ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~ 76 (111)
T PF14062_consen 23 WNYCPDTADIIAVLRYWEERY---GAEIVGIGFDTLELSVARPPQTPEEAEALAAEH 76 (111)
T ss_pred CCCCCCHHHHHHHHHHHHHHh---CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455777777788888888777 7899999876 225666666665
No 282
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.93 E-value=1e+02 Score=32.06 Aligned_cols=134 Identities=20% Similarity=0.200 Sum_probs=66.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHh----------cCcEEEEEeCCCHH------------HHHHHHHHhhhcCC--CCCcc
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEK----------LNTEILGVSTDSVF------------SHLAWVQTDRKSGG--LGDLK 173 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~----------~gv~vv~VS~d~~~------------~~~~~~~~~~~~~~--~~~~~ 173 (271)
-.|||.|.+.+..+.=-+++-+. .+-..|-|.+-.++ +..+|..-.++..- +.+-.
T Consensus 172 VNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~ 251 (877)
T COG0525 172 VNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGRE 251 (877)
T ss_pred ccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCe
Confidence 58999999998888766666321 11112222211110 12344444433221 23445
Q ss_pred cceEEcCChHHHHHhCCccC------C-C----C--ccceEEEEEcCCCcEEEEEe---ccCCCCCCHHHHHHHHHHHHH
Q 024201 174 YPLIADITKSISKSYGVLIP------D-Q----G--IALRGLFIIDKEGVIQHSTI---NNLAIGRSVDETLRTLQALQY 237 (271)
Q Consensus 174 f~~l~D~~~~~~~~ygv~~~------~-~----g--~~~P~~~lID~~G~V~~~~~---~~~~~~~~~~e~l~~l~~l~~ 237 (271)
.|++.|.. +-..||--.. + . | -.+|..-+||+||++....- .++.....-..+++.|++...
T Consensus 252 IpIiaD~~--VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~Gl 329 (877)
T COG0525 252 IPIIADEY--VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGL 329 (877)
T ss_pred eeeecCcc--cCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCC
Confidence 77887753 2233442210 0 0 1 14688999999999995532 122221223455555655433
Q ss_pred hh---hCCCcccCCCCCCCC
Q 024201 238 VQ---ENPDEVCPAGWKPGD 254 (271)
Q Consensus 238 ~~---~~~~~~~p~~~~~~~ 254 (271)
+- ++ .-..|.+|+.|+
T Consensus 330 Lvk~e~~-~h~V~~~~R~g~ 348 (877)
T COG0525 330 LVKIEPH-KHSVGHCERCGT 348 (877)
T ss_pred eEeeeec-cccCccccCCCc
Confidence 32 22 334466777666
No 283
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=32.52 E-value=1.1e+02 Score=22.53 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=15.3
Q ss_pred ceEEEEEcCCCcEEEEEe
Q 024201 199 LRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~~~ 216 (271)
.+..++.|+||.++....
T Consensus 103 ~~~~~f~DPdG~~iEl~~ 120 (123)
T cd08351 103 GRGVYFLDPDGHLLEIIT 120 (123)
T ss_pred eeEEEEECCCCCEEEEEe
Confidence 478999999999998853
No 284
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.25 E-value=1.9e+02 Score=20.79 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=33.9
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.|+.-+++.+++.++..++.+...+. .+.+...+.. ... .....++.|+||.++..
T Consensus 69 ~g~~hi~f~v~~~~~v~~~~~~l~~~------g~~~~~~~~~---~~~---------g~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 69 TGWAHLAFSVGSKEAVDELTERLRAD------GYLIIGEPRT---TGD---------GYYESVILDPEGNRIEI 124 (125)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHC------CCEEEeCcee---cCC---------CeEEEEEECCCCCEEEe
Confidence 36677888888777777777777443 2233322210 001 22346789999998864
No 285
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=32.19 E-value=27 Score=35.90 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=16.6
Q ss_pred EEEEEEecCCCCCChHHHHHHHHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSD 133 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~ 133 (271)
.+.---.+..|||.|.+.+.+..-
T Consensus 166 liy~~~~~v~wcp~~~t~Lsd~ev 189 (800)
T PRK13208 166 LIYRAEAPVLWCPRCETAIAQAEV 189 (800)
T ss_pred CeeecCcccccCCCCCCccchhhh
Confidence 344444557889999988877643
No 286
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=32.17 E-value=2.4e+02 Score=21.86 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=35.6
Q ss_pred CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 142 NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 142 gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
++.-+++.+++.++..++.+...+. .+++..++... +.. .....|+.|++|..+...
T Consensus 59 ~~~hiaf~v~d~~~l~~~~~~l~~~------Gi~~~~~~~~~-----~~~------~~~~~yf~DPdG~~iE~~ 115 (144)
T cd07239 59 SLNHVAFEMPSIDEVMRGIGRMIDK------GIDILWGPGRH-----GPG------DNTFAYFLDPGGFVIEYT 115 (144)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHc------CCceeeCCccc-----CCC------CCEEEEEECCCCcEEEec
Confidence 5667889999888887766666433 33444433210 111 123468999999999874
No 287
>PRK10200 putative racemase; Provisional
Probab=31.97 E-value=97 Score=26.57 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 127 EITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 127 ~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
-.+.|.+..+.+.+.|+++|.|.+|+..... +..++ ..+.|++.-.+
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~~---~~l~~-----~~~iPii~ii~ 106 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKVA---DAIES-----RCSLPFLHIAD 106 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHHH---HHHHH-----hCCCCEeehHH
Confidence 5678888888999999999999999865443 33322 24677776333
No 288
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=31.30 E-value=73 Score=25.53 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcC
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (271)
+|+.+. +---|.+.-.....+++.+++..+. +|+|...+.+....|.+.. +|.++-|.
T Consensus 83 ~vVlmG-GLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms~F~kagW~~~I---------~FD~iID~ 140 (147)
T PF09897_consen 83 VVVLMG-GLAMPKSGVTPEDVNELIKKISPKK--IIGICFMSMFEKAGWDDKI---------DFDYIIDA 140 (147)
T ss_dssp EEEEEG-GGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETTHHHHTTHHHHS-----------SEEEEE
T ss_pred EEEEEc-ccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHHHHHHcCCcccc---------CccEEEee
Confidence 444554 5557888888888999998887554 9999999999999999975 56666554
No 289
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=29.96 E-value=99 Score=30.51 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=44.6
Q ss_pred CCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHH-HHhcCcEEEEEeCCC
Q 024201 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE-FEKLNTEILGVSTDS 152 (271)
Q Consensus 80 ~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~-~~~~gv~vv~VS~d~ 152 (271)
.|.++-..+|+ +.+.....-..++++....|+.|.++.-=.-+..+|.|-.++.. +-.+++.||++...+
T Consensus 61 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 61 NGHPLNAVSLQ---DGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred CCCcccceecc---cccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 47777777776 33332333344566656666666477444456779999999854 223589999998653
No 290
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=29.94 E-value=85 Score=25.31 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=29.6
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~ 153 (271)
|.+|+ ---||.|-...+.|.++.+++.+-.|+...+.....
T Consensus 2 i~~~~-D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFF-DFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEE-BTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEE-eCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 56666 456999999999999999998433455555665544
No 291
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=29.01 E-value=2.5e+02 Score=20.96 Aligned_cols=60 Identities=10% Similarity=-0.029 Sum_probs=36.9
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
.++.-+++.+++.++..++.+...+ ..+.++.++.. +.++ .....++.|++|.++....+
T Consensus 58 ~~~~hl~~~v~d~~~~~~~~~~l~~------~G~~i~~~~~~---~~~~--------~~~~~~~~DPdG~~iei~~~ 117 (131)
T cd08343 58 PGLHHVAFEVESLDDILRAADRLAA------NGIQIEFGPGR---HGPG--------NNLFLYFRDPDGNRVELSAE 117 (131)
T ss_pred CCeeEEEEEcCCHHHHHHHHHHHHH------cCCeeEECCCc---cCCC--------CcEEEEEECCCCCEEEEEcC
Confidence 4677788888887766666666533 23445544321 1111 12347999999999988643
No 292
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=28.77 E-value=2.8e+02 Score=25.39 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCcEEEEEeCCC-----HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCC---c------cCCCC
Q 024201 131 FSDRYTEFEKLNTEILGVSTDS-----VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV---L------IPDQG 196 (271)
Q Consensus 131 L~~~~~~~~~~gv~vv~VS~d~-----~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv---~------~~~~g 196 (271)
|.+..++|.+.|+.++.. .+. ..+..++.+...+. ++.-..|.. .+.-.++-.+|.- . ++..|
T Consensus 79 l~~~r~~F~a~Gv~l~~~-~~~~~l~~~~dK~~~y~~~~~~-~ipvp~~~~-v~t~~el~~a~~~l~~~~~~~CvKP~~g 155 (329)
T PF15632_consen 79 LAAHRDEFEALGVKLLTA-SSAETLELADDKAAFYEFMEAN-GIPVPPYWR-VRTADELKAAYEELRFPGQPLCVKPAVG 155 (329)
T ss_pred HHHHHHHHHHhCCEEEec-CCHHHHHHHhhHHHHHHHHHhC-CCCCCCEEE-eCCHHHHHHHHHhcCCCCceEEEecccC
Confidence 888889999999999983 321 11222333333221 222222323 3333455444442 2 23356
Q ss_pred ccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHH
Q 024201 197 IALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQAL 235 (271)
Q Consensus 197 ~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l 235 (271)
+.-..+.+||.+..-......+....-+.+++++.|+..
T Consensus 156 ~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~ 194 (329)
T PF15632_consen 156 IGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRS 194 (329)
T ss_pred CCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhcc
Confidence 667889999977665555545444445678888887743
No 293
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.69 E-value=4.7e+02 Score=24.09 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=50.2
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCH-----HHHHHHHHHhhhcCCCCCcccceEEcCChHH
Q 024201 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV-----FSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (271)
Q Consensus 110 ~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~-----~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 184 (271)
+.|+.|..-+ +.-. ...+.++...|+.+|..++-...|+. +.++.|.++. +..-.....-.|+..-+
T Consensus 139 p~Vil~vGVN--G~GK--TTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 139 PFVILFVGVN--GVGK--TTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGADPAAVA 210 (340)
T ss_pred cEEEEEEecC--CCch--HhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCCCcHHHH
Confidence 6667776333 2322 23456677777888999999999974 4556777765 22111111122332212
Q ss_pred HHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 185 SKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 185 ~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.++..-. ..+|+. .+|||.-||+...
T Consensus 211 fDAi~~A-kar~~D---vvliDTAGRLhnk 236 (340)
T COG0552 211 FDAIQAA-KARGID---VVLIDTAGRLHNK 236 (340)
T ss_pred HHHHHHH-HHcCCC---EEEEeCcccccCc
Confidence 1111110 011222 7899999998765
No 294
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=28.07 E-value=2.8e+02 Score=21.39 Aligned_cols=60 Identities=3% Similarity=-0.040 Sum_probs=39.3
Q ss_pred hcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 140 KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 140 ~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
..++.=|++.+++.+++.++.+...+. .+++...+.. .+.. ....+|+-|++|..+....
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~------G~~~~~~p~~-----~~~~------~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAH------DVKVVFGPGR-----HPPS------DSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHC------CCcEEeCCce-----ECCC------CCEEEEEECCCCCEEEEEe
Confidence 347889999999888887777776432 3344443311 1111 2355799999999998854
No 295
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=27.71 E-value=1.5e+02 Score=21.49 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=34.4
Q ss_pred CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 142 NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 142 gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++.-+++.+++.++..++.+...+. ...+..+... ....+ .....++.|++|..+....+
T Consensus 58 ~~~~~~~~v~~~~~l~~~~~~l~~~------G~~~~~~~~~-~~~~~---------~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 58 RLDVVSFSVASRADVDALARQVAAR------GGTVLSEPGA-TDDPG---------GGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHc------CCceecCCcc-cCCCC---------CceEEEEECCCCCEEEEEec
Confidence 4556778887777777777766432 2223222110 00001 12357899999999988643
No 296
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=27.52 E-value=62 Score=22.92 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=10.5
Q ss_pred cceEEEEEcCCCcEEEEE
Q 024201 198 ALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 198 ~~P~~~lID~~G~V~~~~ 215 (271)
+-|..+|+|.+|+++...
T Consensus 41 ~~P~L~l~d~~g~~~E~i 58 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERI 58 (78)
T ss_dssp ---EEEEE-SSS--SEEE
T ss_pred CCCEEEEEcCCCCEEEEE
Confidence 569999999999987773
No 297
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=27.05 E-value=1.8e+02 Score=21.97 Aligned_cols=28 Identities=14% Similarity=0.372 Sum_probs=23.0
Q ss_pred ChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 181 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 181 ~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
+.++.+.||+. ..|+.+++ ++|+.+...
T Consensus 71 e~~L~~r~gv~------~~PaLvf~-R~g~~lG~i 98 (107)
T PF07449_consen 71 ERALAARFGVR------RWPALVFF-RDGRYLGAI 98 (107)
T ss_dssp HHHHHHHHT-T------SSSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHhCCc------cCCeEEEE-ECCEEEEEe
Confidence 47889999999 89999998 789988874
No 298
>PLN02367 lactoylglutathione lyase
Probab=26.91 E-value=3.5e+02 Score=23.43 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=34.2
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
.|+.-|++.+++.+...+.++.. + +.+...+.. |. .....||-|+||.++...
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a~-------G--v~~v~~P~~------g~-------~~riaFIkDPDGn~IEL~ 220 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEEL-------G--VEFVKKPND------GK-------MKGIAFIKDPDGYWIEIF 220 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHHC-------C--CEEEeCCcc------CC-------ceEEEEEECCCCCEEEEE
Confidence 37888999998877666666654 3 334433221 11 234578999999999875
No 299
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.91 E-value=60 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCcEEEEEe
Q 024201 130 AFSDRYTEFEKLNTEILGVS 149 (271)
Q Consensus 130 ~L~~~~~~~~~~gv~vv~VS 149 (271)
+..++.+++.++|+.+|+|+
T Consensus 96 e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 96 EAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEE
Confidence 55667777888899999999
No 300
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=26.75 E-value=60 Score=21.86 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=20.7
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhcCcEEEE-EeCC
Q 024201 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG-VSTD 151 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~-VS~d 151 (271)
|.-+.-||.|..+ +...-+.+.+|+++- |-..
T Consensus 7 FIAGA~CP~C~~~-----Dtl~mW~En~ve~vECV~CG 39 (66)
T COG3529 7 FIAGAVCPACQAQ-----DTLAMWRENNVEIVECVKCG 39 (66)
T ss_pred hhccCCCcccchh-----hHHHHHHhcCCceEehhhcc
Confidence 3346779999865 334445667888875 5543
No 301
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=26.58 E-value=2.7e+02 Score=26.33 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=42.8
Q ss_pred CCChH-HHHHHHHHHHH-HHHhcCcEEEEEeCCC-----HHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccC
Q 024201 121 TFVCP-TEITAFSDRYT-EFEKLNTEILGVSTDS-----VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIP 193 (271)
Q Consensus 121 Cp~C~-~~l~~L~~~~~-~~~~~gv~vv~VS~d~-----~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~ 193 (271)
+++-. +.+..|...|- ..+.+.|.+ |+.|+ .+.++.|.+-+ ++++.++.++ .++..+..-.
T Consensus 212 TGVGKTTTlAKLAar~~~~~~~~kVai--ITtDtYRIGA~EQLk~Ya~im-------~vp~~vv~~~-~el~~ai~~l-- 279 (407)
T COG1419 212 TGVGKTTTLAKLAARYVMLKKKKKVAI--ITTDTYRIGAVEQLKTYADIM-------GVPLEVVYSP-KELAEAIEAL-- 279 (407)
T ss_pred CCCcHHHHHHHHHHHHHhhccCcceEE--EEeccchhhHHHHHHHHHHHh-------CCceEEecCH-HHHHHHHHHh--
Confidence 45554 44666666665 333444544 45554 34445566655 7777776654 4566555544
Q ss_pred CCCccceEEEEEcCCCc
Q 024201 194 DQGIALRGLFIIDKEGV 210 (271)
Q Consensus 194 ~~g~~~P~~~lID~~G~ 210 (271)
.....+|||.-|+
T Consensus 280 ----~~~d~ILVDTaGr 292 (407)
T COG1419 280 ----RDCDVILVDTAGR 292 (407)
T ss_pred ----hcCCEEEEeCCCC
Confidence 2335788888887
No 302
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.45 E-value=1.4e+02 Score=21.82 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=13.6
Q ss_pred ceEEEEEcCCCcEEEE
Q 024201 199 LRGLFIIDKEGVIQHS 214 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~ 214 (271)
.+.+++.|+||.++..
T Consensus 96 ~r~f~~~DPdGn~~~~ 111 (113)
T cd08356 96 GREFFLHDPSGVLWHI 111 (113)
T ss_pred cEEEEEECCCccEEEe
Confidence 4679999999998865
No 303
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=26.38 E-value=1.3e+02 Score=26.93 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=61.6
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCC-------------CHHHHHHHHHHhhhcCCCCCcccceE
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-------------SVFSHLAWVQTDRKSGGLGDLKYPLI 177 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d-------------~~~~~~~~~~~~~~~~~~~~~~f~~l 177 (271)
+||-|.. ||....... -+...|.+.|+.+|+|+.- ...+...|.+..-+..++.+.-.-+.
T Consensus 37 TVv~~hG---sPGSH~DFk---Yi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~g 110 (297)
T PF06342_consen 37 TVVAFHG---SPGSHNDFK---YIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKLIFLG 110 (297)
T ss_pred eEEEecC---CCCCccchh---hhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCCCceEEEE
Confidence 5666662 676655444 4455666779999999752 23455677777766666654433344
Q ss_pred EcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEecc
Q 024201 178 ADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINN 218 (271)
Q Consensus 178 ~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~ 218 (271)
.-...+.+-++.+..+ .-..++|++-|-..++-+.+
T Consensus 111 HSrGcenal~la~~~~-----~~g~~lin~~G~r~HkgIrp 146 (297)
T PF06342_consen 111 HSRGCENALQLAVTHP-----LHGLVLINPPGLRPHKGIRP 146 (297)
T ss_pred eccchHHHHHHHhcCc-----cceEEEecCCccccccCcCH
Confidence 4445666666655532 23578999999988886655
No 304
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=26.04 E-value=1.5e+02 Score=21.76 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=23.2
Q ss_pred CCceeEecccccC-CcEEEEEEecCCCCCChHHHHHHHHH
Q 024201 95 QEFINVKLSDYIG-KKYVILFFYPLDFTFVCPTEITAFSD 133 (271)
Q Consensus 95 ~~g~~v~Lsd~~g-kk~vvL~F~~~t~Cp~C~~~l~~L~~ 133 (271)
.+|..+.+-+++. ...|.|.|- +. |..|....-.|..
T Consensus 28 ~dGGdve~~~i~~~~g~V~l~l~-Ga-C~gC~sS~~TLk~ 65 (93)
T COG0694 28 MDGGDVELVGIDEEDGVVYLRLG-GA-CSGCPSSTVTLKN 65 (93)
T ss_pred ccCCeEEEEEEecCCCeEEEEeC-Cc-CCCCcccHHHHHH
Confidence 3555788888875 225666666 77 8888755444444
No 305
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=25.91 E-value=1.8e+02 Score=25.80 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhh
Q 024201 127 EITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRK 165 (271)
Q Consensus 127 ~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~ 165 (271)
.+|.-.+..++++++|+.++.|+-++........++...
T Consensus 25 ~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~ 63 (269)
T COG0647 25 AIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSS 63 (269)
T ss_pred cCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 567777888888889999999998875544444454433
No 306
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=25.91 E-value=3.3e+02 Score=21.42 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=19.3
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcE
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVI 211 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V 211 (271)
..+.+.||+... ..|..+|++.+..-
T Consensus 139 ~~~~~~~~i~~~----~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 139 PRLLKYFGIDED----DLPALVIFDSNKGK 164 (184)
T ss_dssp HHHHHHTTTTTS----SSSEEEEEETTTSE
T ss_pred HHHHHHcCCCCc----cCCEEEEEECCCCc
Confidence 567888888732 68999999955544
No 307
>PRK00865 glutamate racemase; Provisional
Probab=25.84 E-value=4.4e+02 Score=22.87 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=43.4
Q ss_pred EEEEEecCCCCCChH---HH-HHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHH
Q 024201 111 VILFFYPLDFTFVCP---TE-ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISK 186 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~---~~-l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 186 (271)
-+++|.--.++|+-. .+ ...+.+..+.+.+.|++.|.|.+|+.... +.+..++ .+++|++. ....+..
T Consensus 32 ~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~--~l~~lr~-----~~~iPvig-i~~a~~~ 103 (261)
T PRK00865 32 HIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAV--ALPDLRE-----RYDIPVVG-IVPAIKP 103 (261)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHH--HHHHHHH-----hCCCCEEe-eHHHHHH
Confidence 467887677788653 33 33444566778888999999999985432 2233322 24678887 6544443
Q ss_pred H
Q 024201 187 S 187 (271)
Q Consensus 187 ~ 187 (271)
+
T Consensus 104 a 104 (261)
T PRK00865 104 A 104 (261)
T ss_pred H
Confidence 3
No 308
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=25.70 E-value=1.6e+02 Score=22.99 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.8
Q ss_pred EEEEEcCCCcEEEEE
Q 024201 201 GLFIIDKEGVIQHST 215 (271)
Q Consensus 201 ~~~lID~~G~V~~~~ 215 (271)
..+++|++|++++..
T Consensus 52 ~~~~~d~~g~~~~~~ 66 (161)
T PF05228_consen 52 LIFILDPDGRVLYSS 66 (161)
T ss_pred EEEEEcCCCCEEEEe
Confidence 489999999999843
No 309
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=25.57 E-value=2e+02 Score=18.87 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=8.7
Q ss_pred CCCCCChHHHHHH
Q 024201 118 LDFTFVCPTEITA 130 (271)
Q Consensus 118 ~t~Cp~C~~~l~~ 130 (271)
..+||.|....-.
T Consensus 6 ~~~~p~~~rvr~~ 18 (71)
T cd03037 6 YEHCPFCVKARMI 18 (71)
T ss_pred cCCCcHhHHHHHH
Confidence 3679999855333
No 310
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=25.54 E-value=2.3e+02 Score=20.64 Aligned_cols=58 Identities=9% Similarity=-0.128 Sum_probs=35.4
Q ss_pred CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 142 NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 142 gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
++.-+++.+++.+++.++.+...+. ..++...+... ..+. ....++-|++|.++..+.
T Consensus 61 ~~~hiaf~v~~~~dv~~~~~~l~~~------G~~~~~~~~~~---~~~~--------~~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 61 GLDFMGFKVLDDADLEKLEARLQAY------GVAVERIPAGE---LPGV--------GRRVRFQLPSGHTMELYA 118 (122)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHC------CCcEEEcccCC---CCCC--------ceEEEEECCCCCEEEEEE
Confidence 5677888888877777777776433 22232221100 1111 235899999999998753
No 311
>PHA02762 hypothetical protein; Provisional
Probab=25.51 E-value=80 Score=20.67 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=19.4
Q ss_pred eEEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q 024201 200 RGLFIIDKEGVIQHSTINNLAIGRSVDETLR 230 (271)
Q Consensus 200 P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~ 230 (271)
.-++=||.+|++.+..+.+. ++++.+-++
T Consensus 29 fvtigide~g~iayisiep~--dkdl~~~i~ 57 (62)
T PHA02762 29 FVTIGIDENDKISYISIEPL--DKDLKEGIK 57 (62)
T ss_pred EEEEeECCCCcEEEEEeccc--chHHHHhhh
Confidence 44678999999999977653 234444443
No 312
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=25.50 E-value=2.8e+02 Score=23.60 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe-ccCCCCCCHHHHHHHHHH
Q 024201 183 SISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI-NNLAIGRSVDETLRTLQA 234 (271)
Q Consensus 183 ~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~-~~~~~~~~~~e~l~~l~~ 234 (271)
-++.++|+.... ..--.+++|.+|+...-.. ++...+..-.++++.|+.
T Consensus 120 ~Va~~Lgi~~~n---~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk 169 (227)
T KOG1615|consen 120 PVAEQLGIPKSN---IYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRK 169 (227)
T ss_pred HHHHHhCCcHhh---hhhheeeeccCCcccccccCCccccCCccHHHHHHHHh
Confidence 445556655321 1233578999999888533 333333345677777765
No 313
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=25.47 E-value=4.3e+02 Score=22.55 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=43.5
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEE--EEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhC
Q 024201 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEIL--GVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (271)
Q Consensus 112 vL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv--~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~yg 189 (271)
+++|...+ -| . ..|.+++.+-...|+.+| |+-.++..+...-.....+.+ ....+. -+....++|+
T Consensus 92 ~~vFVSfS-MP--~---~sLk~Ll~qa~~~G~p~VlRG~~~nsfk~Ta~~v~~L~~~~----~~~gv~--IDP~lF~~F~ 159 (212)
T PRK13730 92 ALYFVSFS-IP--E---EGLKRMLGETRHYGIPATLRGMVNNDLKTTAEAVLSLVKDG----ATDGVQ--IDPTLFSQYG 159 (212)
T ss_pred eEEEEEcC-CC--H---HHHHHHHHHHHHhCCcEEEeCCCCCCHHHHHHHHHHHhccC----CCCcee--ECHHHHHhcC
Confidence 56676333 22 1 245555555555565544 455566444444333332211 111122 3678999999
Q ss_pred CccCCCCccceEEEEEcCC
Q 024201 190 VLIPDQGIALRGLFIIDKE 208 (271)
Q Consensus 190 v~~~~~g~~~P~~~lID~~ 208 (271)
|. ..|++++....
T Consensus 160 I~------~VPafVv~C~~ 172 (212)
T PRK13730 160 IR------SVPALVVFCSQ 172 (212)
T ss_pred Cc------cccEEEEEcCC
Confidence 99 89999998654
No 314
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=25.42 E-value=3.4e+02 Score=21.39 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.9
Q ss_pred cEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEE-EEeCCC
Q 024201 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEIL-GVSTDS 152 (271)
Q Consensus 109 k~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv-~VS~d~ 152 (271)
+.+||-|. -.|-|.|..+-.-|.+..++.+ ++.+| .|..+.
T Consensus 21 rvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~--~~a~IY~vDi~~ 62 (133)
T PF02966_consen 21 RVVVIRFG-RDWDPVCMQMDEILYKIAEKVK--NFAVIYLVDIDE 62 (133)
T ss_dssp SEEEEEEE--TTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTT
T ss_pred eEEEEEeC-CCCCccHHHHHHHHHHHHHHhh--cceEEEEEEccc
Confidence 48889998 6899999999888999988876 45444 455553
No 315
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=24.98 E-value=90 Score=21.70 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=13.5
Q ss_pred cceEEEEEcCCCcEEEEEec
Q 024201 198 ALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 198 ~~P~~~lID~~G~V~~~~~~ 217 (271)
..--.+-||+||+|....+.
T Consensus 27 ~~~V~i~i~~dG~v~~~~i~ 46 (85)
T PF13103_consen 27 SVTVRITIDPDGRVISVRIV 46 (85)
T ss_dssp -EEEEEEE-TTSBEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEe
Confidence 34557899999999766554
No 316
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=24.72 E-value=2.8e+02 Score=20.17 Aligned_cols=57 Identities=12% Similarity=-0.079 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 142 NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 142 gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
|+.-+++.+++.++..+|.+...+.+ .+ +...... . + .....++.|++|..+....+
T Consensus 62 ~~~h~af~v~~~~~v~~~~~~l~~~G----~~--~~~~~~~---~--~--------~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 62 GLGHIAWRASSPEALERRVAALEASG----LG--IGWIEGD---P--G--------HGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHHHcC----Cc--cccccCC---C--C--------CcceEEEECCCCCEEEEEEe
Confidence 57778899998888888888775432 22 2111100 0 1 12357999999999988653
No 317
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=24.72 E-value=4.5e+02 Score=22.77 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=40.1
Q ss_pred EEEEecCCCCCChH---H-HHHHHHHHHHHHH-hcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCC
Q 024201 112 ILFFYPLDFTFVCP---T-EITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (271)
Q Consensus 112 vL~F~~~t~Cp~C~---~-~l~~L~~~~~~~~-~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (271)
+++|.--.+.|+-. . ..+.+.+..+.+. +.|+++|.|.+|+.. ..|.+..++ ..++|++.-.+
T Consensus 26 ~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~--a~~~~~l~~-----~~~iPii~iie 93 (251)
T TIGR00067 26 YIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTAS--ALALEDLQR-----NFDFPVVGVIE 93 (251)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH--HHHHHHHHH-----HCCCCEEeecH
Confidence 55665455566542 3 3556667778888 899999999999854 234444433 23567776443
No 318
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=24.69 E-value=3.3e+02 Score=21.44 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=36.4
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
.++.-|++.+++.++..++.+...+.+ +. +. .. . + .+ .....|+-|++|..+.....
T Consensus 64 ~~l~Hiaf~v~d~~dvd~~~~~L~~~G----v~--~~-~~---~----~-----~~-~~~s~yf~DPdG~~iEl~~~ 120 (157)
T cd08347 64 GTVHHVAFRVPDDEELEAWKERLEALG----LP--VS-GI---V----D-----RF-YFKSLYFREPGGILFEIATD 120 (157)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCC----CC--cc-cc---c----c-----cc-cEEEEEEECCCCcEEEEEEC
Confidence 357788999998777777777775432 22 11 00 0 0 01 23568999999999988654
No 319
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=24.47 E-value=3.3e+02 Score=21.23 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=37.2
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
.++.-|++.+++.++..+..+...+. .+++...... .+.. ....+|+-|++|..+.....
T Consensus 72 ~g~~Hiaf~V~d~~~l~~~~~~L~~~------G~~v~~~~~~-----~~~~------~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 72 KRIHHLMLEVTSLDDVGRAYDRVRAR------GIPIAMTLGR-----HTND------RMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHHHc------CCceeccCCc-----cCCC------CcEEEEEECCCCcEEEeccC
Confidence 46777999999888776666665432 2333221110 1111 34568999999999988644
No 320
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=24.47 E-value=1.8e+02 Score=23.30 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=22.6
Q ss_pred hHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 182 KSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 182 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
...+..+|+. .+|+++| ||+ +...+. ...+++.+.||
T Consensus 157 ~~~a~~~gv~------GvP~~vv---~g~--~~~~G~----~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEARQLGVF------GVPTFVV---NGK--YRFFGA----DRLDELEDALQ 193 (193)
T ss_dssp HHHHHHTTCS------SSSEEEE---TTT--EEEESC----SSHHHHHHHH-
T ss_pred HHHHHHcCCc------ccCEEEE---CCE--EEEECC----CCHHHHHHHhC
Confidence 4556778888 7898877 677 332222 34666666553
No 321
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=24.02 E-value=1.1e+02 Score=19.44 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHhh
Q 024201 199 LRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQ 239 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~~l~~~~ 239 (271)
..++.|++.||+|+.. -... ....+..+.|+.++...
T Consensus 5 ~~~f~L~a~ng~vias-se~Y---~sk~~a~~~I~~Vk~~a 41 (49)
T PF07411_consen 5 QFRFRLKAGNGEVIAS-SEGY---SSKADAEKGIESVKKNA 41 (49)
T ss_dssp EEEEEEE-TTS-EEEE-BEEB---SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCEEEe-cCCc---CCHHHHHHHHHHHHHhC
Confidence 4568899999999994 2222 23455556665555443
No 322
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=23.69 E-value=3.2e+02 Score=20.43 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=23.7
Q ss_pred HHHHhCCccCCCCccceEEEEEcCCCcEEEEEeccCCCCC-CHHHHHHHHH
Q 024201 184 ISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGR-SVDETLRTLQ 233 (271)
Q Consensus 184 ~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~~~~~~~-~~~e~l~~l~ 233 (271)
+.+.||+..+. + ..|...|++.++ -++.. . ..- ..+.+.+-++
T Consensus 65 ~l~~fgl~~~~-~-~~P~~~i~~~~~-~KY~~-~---~~~~t~e~i~~F~~ 108 (111)
T cd03073 65 ELEEFGLDFSG-G-EKPVVAIRTAKG-KKYVM-E---EEFSDVDALEEFLE 108 (111)
T ss_pred HHHHcCCCccc-C-CCCEEEEEeCCC-CccCC-C---cccCCHHHHHHHHH
Confidence 56677776320 0 278899998776 34431 1 112 4555655554
No 323
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=23.66 E-value=2e+02 Score=20.47 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=21.5
Q ss_pred EEEEcCCCcEEEEEeccCCCC-CCHHHHHHHH
Q 024201 202 LFIIDKEGVIQHSTINNLAIG-RSVDETLRTL 232 (271)
Q Consensus 202 ~~lID~~G~V~~~~~~~~~~~-~~~~e~l~~l 232 (271)
.+.+|.+|+|+.+.+.+.-.. .+.+++-+.|
T Consensus 33 ~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I 64 (93)
T PF02575_consen 33 TVTVNGNGEVVDIEIDPSALRPLDPEELEDLI 64 (93)
T ss_dssp EEEEETTS-EEEEEE-GGGGCTS-HHHHHHHH
T ss_pred EEEEecCceEEEEEEehHhhccCCHHHHHHHH
Confidence 789999999999999877666 5555555544
No 324
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=23.48 E-value=3.2e+02 Score=20.46 Aligned_cols=59 Identities=5% Similarity=-0.178 Sum_probs=36.8
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEe
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTI 216 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~ 216 (271)
.|+.-|++.+++.+++.++.+...+. + +++...+.. .... ..-.+|+.|++|..+....
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~----G--~~~~~~~~~-----~~~~------~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRA----G--YQTGWGPGR-----HRIG------SNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHc----C--CccccCCCC-----cCCC------ccEEEEEECCCCCEEEEEc
Confidence 47888999999988888776766433 2 222211110 1111 1234799999999998864
No 325
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=23.45 E-value=1.3e+02 Score=22.60 Aligned_cols=39 Identities=5% Similarity=-0.169 Sum_probs=24.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeC--C--CHHHHHHHHHHh
Q 024201 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTD 163 (271)
Q Consensus 118 ~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~--d--~~~~~~~~~~~~ 163 (271)
...|..|+..+.-|. +.|+.+..+.. + +.++...|++..
T Consensus 6 ~~~C~t~rkA~~~L~-------~~~i~~~~~di~~~~~t~~el~~~l~~~ 48 (112)
T cd03034 6 NPRCSKSRNALALLE-------EAGIEPEIVEYLKTPPTAAELRELLAKL 48 (112)
T ss_pred CCCCHHHHHHHHHHH-------HCCCCeEEEecccCCcCHHHHHHHHHHc
Confidence 566999987654443 34655555543 3 346667788766
No 326
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=23.42 E-value=39 Score=27.64 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=16.5
Q ss_pred EEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q 024201 201 GLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQ 233 (271)
Q Consensus 201 ~~~lID~~G~V~~~~~~~~~~~~~~~e~l~~l~ 233 (271)
-.+|.|++|++++.. +++.++.+.|+
T Consensus 76 L~~IYD~~G~lLW~q-------r~vP~l~~~I~ 101 (180)
T PF08918_consen 76 LVLIYDENGKLLWRQ-------RDVPELEKRIQ 101 (180)
T ss_dssp EEEEEETTS-EEEES-------S--HHHHCCS-
T ss_pred EEEEEcCCCcEEEec-------CccHHHHHhcC
Confidence 468899999999984 56666555443
No 327
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=23.34 E-value=3.8e+02 Score=23.47 Aligned_cols=13 Identities=0% Similarity=0.010 Sum_probs=6.6
Q ss_pred HHhcCcEEEEEeC
Q 024201 138 FEKLNTEILGVST 150 (271)
Q Consensus 138 ~~~~gv~vv~VS~ 150 (271)
+++.|+.++.++-
T Consensus 49 i~~~g~~v~~~~~ 61 (279)
T TIGR03590 49 LLSAGFPVYELPD 61 (279)
T ss_pred HHHcCCeEEEecC
Confidence 3444566555543
No 328
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=23.23 E-value=1e+02 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=12.7
Q ss_pred CCCCChHHH--HHHHHHHHHHH
Q 024201 119 DFTFVCPTE--ITAFSDRYTEF 138 (271)
Q Consensus 119 t~Cp~C~~~--l~~L~~~~~~~ 138 (271)
+|||.|-.. +..|.+...++
T Consensus 18 ~~CpGCg~~~il~~l~~al~~l 39 (286)
T PRK11867 18 RWCPGCGDGSILAALQRALAEL 39 (286)
T ss_pred CcCCCCCCHHHHHHHHHHHHHh
Confidence 489999643 55555555554
No 329
>PHA00649 hypothetical protein
Probab=23.08 E-value=52 Score=22.79 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=17.9
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHh
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTD 163 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~ 163 (271)
+-+.+++|.+|.+++.++|.+.+
T Consensus 21 ~~~~~LGVD~~~P~~VEEFr~D~ 43 (83)
T PHA00649 21 KVFAILGVDVDVPEQVEEFREDL 43 (83)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHH
Confidence 34667889999999888887765
No 330
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=22.95 E-value=1.5e+02 Score=21.44 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHh
Q 024201 126 TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (271)
Q Consensus 126 ~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~ 163 (271)
...+.+.++.+++++.|+.++.+|.........+.+.+
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~ 61 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL 61 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc
Confidence 34566777778888889999999988877777777765
No 331
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.29 E-value=2.6e+02 Score=18.90 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=10.8
Q ss_pred EecCCCCCChHHHHHHH
Q 024201 115 FYPLDFTFVCPTEITAF 131 (271)
Q Consensus 115 F~~~t~Cp~C~~~l~~L 131 (271)
.|...+||.|....-.|
T Consensus 4 Ly~~~~sp~~~kv~~~L 20 (77)
T cd03041 4 LYEFEGSPFCRLVREVL 20 (77)
T ss_pred EecCCCCchHHHHHHHH
Confidence 34357899998654444
No 332
>PRK06126 hypothetical protein; Provisional
Probab=22.19 E-value=5.3e+02 Score=24.83 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=24.8
Q ss_pred CCCCCCCCCeEEeeecCCCceeEecccccCCcEEEEEEe
Q 024201 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFY 116 (271)
Q Consensus 78 ~~~G~~~Pdf~l~~~~~~~g~~v~Lsd~~gkk~vvL~F~ 116 (271)
..+|..+|+.-|. + .+++-|+.|+.++||.|-
T Consensus 446 ~~pG~r~ph~~l~---~----~~s~~dl~g~~f~Ll~~~ 477 (545)
T PRK06126 446 ACPGGRAPHAWLS---D----GRSLYDLFGPGFTLLRFG 477 (545)
T ss_pred CCCCcCCCCeeec---C----CcchHHhcCCceEEEecC
Confidence 4589999999884 2 368888888878888775
No 333
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.84 E-value=1.8e+02 Score=21.04 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=13.1
Q ss_pred eEEEEEcCCCcEEEEE
Q 024201 200 RGLFIIDKEGVIQHST 215 (271)
Q Consensus 200 P~~~lID~~G~V~~~~ 215 (271)
...++.|+||.++...
T Consensus 108 ~~~~~~DPdG~~iE~~ 123 (125)
T cd08357 108 ETFFLKDPSGNALEFK 123 (125)
T ss_pred eEEEEECCCCCEEEEe
Confidence 5588999999998764
No 334
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=21.79 E-value=1.8e+02 Score=23.20 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=27.2
Q ss_pred HHHHHhhhcCCCCCcccceEEcCC---hHHHHHhCCccCCCCccceEEEEEcCCCcEEE
Q 024201 158 AWVQTDRKSGGLGDLKYPLIADIT---KSISKSYGVLIPDQGIALRGLFIIDKEGVIQH 213 (271)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~---~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~ 213 (271)
+.++...+.....+..|....+.. .+..++-|+. .-..|+||+.|+|..
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~-------~~~i~~i~~~~~~~~ 156 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP-------PSRIFTINPKGEVHQ 156 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC-------hhhEEEECCCCcccc
Confidence 344444333322244554444443 4445555554 566899999999863
No 335
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=21.65 E-value=60 Score=22.36 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=12.8
Q ss_pred ceEEEEEcCCCcEEEE
Q 024201 199 LRGLFIIDKEGVIQHS 214 (271)
Q Consensus 199 ~P~~~lID~~G~V~~~ 214 (271)
.-..||+|++|+|+..
T Consensus 53 ~g~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 53 NGYAFIVDKNGTIIAH 68 (81)
T ss_dssp TBEEEEEETTSBBCE-
T ss_pred CEEEEEEECCCCEEEe
Confidence 3458999999999987
No 336
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=21.64 E-value=54 Score=34.10 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=18.0
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHH
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTE 137 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~ 137 (271)
+.--..+..|||.|.+.+.+..=.+++
T Consensus 168 Iyr~~~~v~wcp~~~talsd~EV~~~~ 194 (874)
T PRK05729 168 IYRGKRLVNWDPKLQTALSDLEVEYKE 194 (874)
T ss_pred EeecCcccccCCCCCCcchhhhccccc
Confidence 444445678899999888876543433
No 337
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=21.37 E-value=1.9e+02 Score=25.87 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=29.7
Q ss_pred CCceeEecccccCCcEEEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 024201 95 QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK 140 (271)
Q Consensus 95 ~~g~~v~Lsd~~gkk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~ 140 (271)
.+|..+.|-++++. .+.|-|- |. |..|....-.|..+.+.+++
T Consensus 237 ~dGGdv~lv~v~~~-~v~v~l~-Ga-C~gC~~s~~Tl~~Ie~~l~~ 279 (290)
T TIGR02000 237 ADGGDVELYDVDGK-IVYVVLT-GA-CSGCSMSTMTLKGIQQRLRE 279 (290)
T ss_pred hcCCcEEEEEEeCC-EEEEEEe-eC-CCCCcchHHHHHHHHHHHHH
Confidence 35568888888886 5667776 77 88887665566655555554
No 338
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=21.34 E-value=2.5e+02 Score=20.25 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=23.8
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
.+-.+|+|.+.+.++.+++.+.+. ..+|++..-.+.++++.
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L~------~~gy~~~dls~ne~~k~ 89 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERLK------ALGYPYEDLSDNELAKL 89 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHHT------SSS-EEECTTT-HHHHH
T ss_pred eeeEEEEEEeCCHHHHHHHHHHHH------HcCCCeEECCCCHHHHh
Confidence 356777888877666677777663 34555555455666554
No 339
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=21.19 E-value=4.2e+02 Score=20.96 Aligned_cols=59 Identities=14% Similarity=-0.010 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEEec
Q 024201 142 NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTIN 217 (271)
Q Consensus 142 gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~~~ 217 (271)
++.-|++.+++.+++.++.+...+. +.. +..++.. .+.. ..-..|+.|++|.++.....
T Consensus 69 ~~~hiaf~v~~~~~l~~~~~~l~~~----Gv~--i~~~p~~-----~~~~------~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 69 RLHHLAYALDTREDVLRAADIFLEN----GIF--IEAGPGK-----HGIQ------QTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHc----CCc--cccCCcc-----cCCC------CceEEEEECCCCCEEEEEEc
Confidence 5677889999888887777776443 222 2222211 1111 12247899999999987543
No 340
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=20.92 E-value=87 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhCCCccc-------------CCCCCCCCCCCC
Q 024201 225 VDETLRTLQALQYVQENPDEVC-------------PAGWKPGDKSMK 258 (271)
Q Consensus 225 ~~e~l~~l~~l~~~~~~~~~~~-------------p~~~~~~~~~~~ 258 (271)
-..+++.++.++ .+.-++.| |..|||+-++++
T Consensus 209 d~tLl~~~~~~~--sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk 253 (342)
T KOG1576|consen 209 DNTLLRYLKRLK--SKGVGVINASALSMGLLTNQGPPPWHPASDELK 253 (342)
T ss_pred cHHHHHHHHHHH--hcCceEEehhhHHHHHhhcCCCCCCCCCCHHHH
Confidence 356777777665 44445555 888999987766
No 341
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=20.91 E-value=1.9e+02 Score=24.69 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHhcC-cEEE
Q 024201 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLN-TEIL 146 (271)
Q Consensus 111 vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~g-v~vv 146 (271)
|||.|. |++.|+-..++.-+....+.++..+ +.++
T Consensus 1 ~~~~~g-GSFdPiH~gHl~ia~~a~~~l~~~~~~~~v 36 (225)
T cd09286 1 VVLLAC-GSFNPITNMHLRMFELARDHLHETGRYEVV 36 (225)
T ss_pred CEEEeC-cCcCCCcHHHHHHHHHHHHHHHhhcCceeE
Confidence 356666 9999999999988888888887555 4443
No 342
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=20.66 E-value=3e+02 Score=19.01 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=10.9
Q ss_pred eEEEEEcCCCcEEE
Q 024201 200 RGLFIIDKEGVIQH 213 (271)
Q Consensus 200 P~~~lID~~G~V~~ 213 (271)
...++.|++|.++.
T Consensus 100 ~~~~~~DP~G~~iE 113 (114)
T cd07245 100 RQLFVRDPDGNRIE 113 (114)
T ss_pred cEEEEECCCCCEEe
Confidence 45788999998764
No 343
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=20.66 E-value=2.6e+02 Score=24.20 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=26.0
Q ss_pred EEEEEEecCCCC---------CChH--HHHHHHHHHHHHHHhcC--cEEEEEeCCCHH
Q 024201 110 YVILFFYPLDFT---------FVCP--TEITAFSDRYTEFEKLN--TEILGVSTDSVF 154 (271)
Q Consensus 110 ~vvL~F~~~t~C---------p~C~--~~l~~L~~~~~~~~~~g--v~vv~VS~d~~~ 154 (271)
..|++||.++-| +.|+ ....+|.++..-++... ..||.|+.-..+
T Consensus 70 ~lvtVffGaNDs~l~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~d 127 (245)
T KOG3035|consen 70 VLVTVFFGANDSCLPEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVD 127 (245)
T ss_pred eEEEEEecCccccCCCCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEecCCCcC
Confidence 345556645444 1354 33556666666666433 678888876543
No 344
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.64 E-value=3.7e+02 Score=20.10 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=32.4
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEE
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHS 214 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~ 214 (271)
.|+.-|++.+++.+...+.++.. +.. ++..... +. . ..+..|+-|+||.++..
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~~-------G~~--~~~~~~~-----~~-~------~~r~~~~~DPdG~~iEl 138 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRKH-------GAE--LVGEVVQ-----YE-N------SYRLCYIRGPEGILIEL 138 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHHC-------CCc--eeCCcee-----cC-C------CeEEEEEECCCCCEEEe
Confidence 46778888888866665555554 222 2221100 11 1 34668999999999876
No 345
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=20.62 E-value=3.8e+02 Score=20.25 Aligned_cols=78 Identities=8% Similarity=0.028 Sum_probs=41.9
Q ss_pred CcEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHH
Q 024201 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (271)
Q Consensus 108 kk~vvL~F~~~t~Cp~C~~~l~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 187 (271)
++.|++.|. .+ -..-..++.-|.+.+++.+..| .++-|.+.+. +.+...+.++-..+....++.+..=.++++.+.
T Consensus 19 r~NVLvLy~-ks-~k~a~~~Lk~~~~~A~~vkG~g-T~~~vdCgd~-e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkd 94 (112)
T cd03067 19 RNNVLVLYS-KS-AKSAEALLKLLSDVAQAVKGQG-TIAWIDCGDS-ESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTE 94 (112)
T ss_pred cCcEEEEEe-cc-hhhHHHHHHHHHHHHHHhcCce-eEEEEecCCh-HHHHHHHHHccCCCCCCCcchhhcccCCCcccc
Confidence 334555555 22 3455677888999999888655 4556777652 345566655332111122233333344555555
Q ss_pred hC
Q 024201 188 YG 189 (271)
Q Consensus 188 yg 189 (271)
|+
T Consensus 95 Yd 96 (112)
T cd03067 95 YN 96 (112)
T ss_pred cc
Confidence 54
No 346
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=20.46 E-value=3.9e+02 Score=20.31 Aligned_cols=35 Identities=9% Similarity=-0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHh
Q 024201 129 TAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (271)
Q Consensus 129 ~~L~~~~~~~~~~gv~vv~VS~d~~~~~~~~~~~~ 163 (271)
+.+.++..+++++|+.++.+|..+.......++.+
T Consensus 80 ~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~ 114 (176)
T PF13419_consen 80 PGVRELLERLKAKGIPLVIVSNGSRERIERVLERL 114 (176)
T ss_dssp TTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhcccccceeEEeecCCccccccccccc
Confidence 34556667777789999999988877666666666
No 347
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=20.42 E-value=98 Score=21.64 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=11.9
Q ss_pred EEEEcCCCcEEEEE
Q 024201 202 LFIIDKEGVIQHST 215 (271)
Q Consensus 202 ~~lID~~G~V~~~~ 215 (271)
.+++|++|+|++.+
T Consensus 8 i~v~D~~~~i~~~N 21 (110)
T PF08448_consen 8 IFVIDPDGRIVYAN 21 (110)
T ss_dssp EEEEETTSBEEEE-
T ss_pred eEEECCCCEEEEEH
Confidence 67889999999985
No 348
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=20.33 E-value=3.8e+02 Score=20.13 Aligned_cols=54 Identities=6% Similarity=-0.119 Sum_probs=35.1
Q ss_pred cCcEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 141 LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 141 ~gv~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
.++.-|++.+++.+...+-++.. ...++..+.. +. . ..+..++-|++|.++...
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~~---------G~~v~~~p~~-----~~-~------~~~~~~i~dp~G~~ie~~ 121 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVAR---------GAKPVQEPVE-----EP-G------ELKIAAIKGYGDSLHTLV 121 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHHc---------CCeEccCcee-----cC-C------eEEEEEEeccCCcEEEEE
Confidence 46777889998866665555544 3334444332 11 1 356789999999999874
No 349
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.25 E-value=3.5e+02 Score=19.70 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=33.0
Q ss_pred cEEEEEeCCCHHHHHHHHHHhhhcCCCCCcccceEEcCChHHHHHhCCccCCCCccceEEEEEcCCCcEEEEE
Q 024201 143 TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHST 215 (271)
Q Consensus 143 v~vv~VS~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~V~~~~ 215 (271)
...+++.+++.++..++.+...+.+ ..++..+.. . . .....|+.|+||.++...
T Consensus 69 ~~~l~f~v~~~~~vd~~~~~l~~~G------~~i~~~p~~-----~--~------~~~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 69 EVLISLSADSREEVDELVEKALAAG------GKEFREPQD-----H--G------FMYGRSFADLDGHLWEVL 122 (124)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHCC------CcccCCccc-----C--C------ceEEEEEECCCCCEEEEE
Confidence 4467888988777777777765433 122221110 0 0 123478999999998764
Done!