BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024202
(271 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255556085|ref|XP_002519077.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
gi|223541740|gb|EEF43288.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
Length = 277
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/276 (77%), Positives = 233/276 (84%), Gaps = 5/276 (1%)
Query: 1 MVASAISASLSFSATSLNRTFASFFS---NRNSSRSIVSAL-PSPYGDSS-SGLSIRNRG 55
+VASAI+A +SFS S N+T S S +R S+R IVS+L SPY DSS GLS R G
Sbjct: 2 VVASAITAPVSFSIFSTNKTLPSVSSSSFHRVSARFIVSSLNSSPYRDSSIGGLSSRRSG 61
Query: 56 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 115
LPL IDEK+ SY I K NPP+MPAVMTPGGPLDL SVLFRNRIIFIGQPINS
Sbjct: 62 LPLSIDEKNSHRATQSYITIEAKKGNPPIMPAVMTPGGPLDLQSVLFRNRIIFIGQPINS 121
Query: 116 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 175
VAQR ISQLVTLATIDE++DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAAS
Sbjct: 122 QVAQRVISQLVTLATIDENSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAAS 181
Query: 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT 235
Q A++LAGGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV SRHK+DRMYAAFT
Sbjct: 182 QGALLLAGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQSRHKVDRMYAAFT 241
Query: 236 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
GQP+EKVQQYTERDRFLS +EAMEFGLIDGILETEY
Sbjct: 242 GQPLEKVQQYTERDRFLSTSEAMEFGLIDGILETEY 277
>gi|449462250|ref|XP_004148854.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Cucumis sativus]
gi|449515355|ref|XP_004164715.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Cucumis sativus]
Length = 274
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/273 (75%), Positives = 233/273 (85%), Gaps = 2/273 (0%)
Query: 1 MVASAISASLSFSATSLNRTFA-SFFSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGLPL 58
+VAS +ASLSFS S NR + S S RNS RSIVSA P PYGDSS+ GLS + G PL
Sbjct: 2 VVASPFTASLSFSVASNNRASSISQLSRRNSHRSIVSAFPRPYGDSSTIGLSSKTNGAPL 61
Query: 59 KIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVA 118
+D+KDF T SY+ I + DNPP+MPAVMTPGGPLDLSSVLFRNRIIFIGQPINS VA
Sbjct: 62 NLDDKDFLRTSTSYEPIVARRDNPPVMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSTVA 121
Query: 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 178
QR ISQLVTLATIDEDADIL+YLNCPGGS YS+LAIYDCMSWIKPKVGTVCFG+ ASQ A
Sbjct: 122 QRVISQLVTLATIDEDADILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGIVASQGA 181
Query: 179 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQP 238
++LAGGEKGMRYAMPN+RIM++QPQSG GG VEDV+RQVNEAV SR+KI++MYAAFTGQ
Sbjct: 182 LLLAGGEKGMRYAMPNSRIMIHQPQSGCGGDVEDVRRQVNEAVQSRNKIEKMYAAFTGQS 241
Query: 239 IEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
IE +QQY +RDRFLS +EA++FGLIDG+LETEY
Sbjct: 242 IETIQQYIDRDRFLSVSEALDFGLIDGVLETEY 274
>gi|356538797|ref|XP_003537887.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Glycine max]
Length = 273
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/275 (74%), Positives = 232/275 (84%), Gaps = 6/275 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV A+S AS SF+ S R+ + FS+RN SI S+LP+PYG SS GLS ++RG
Sbjct: 1 MVPQALSVPASASFTIASRTRSPSHLVFSHRNPC-SIASSLPNPYGHSSGVGLSSKSRGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
PLK+DEK+ SY I K NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 PLKLDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQ 118
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATIDE+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A++LAGGEKGMRYAMPNARIM++QPQSG GGHVEDV+RQVNEAV SRHKID+MY+ FTG
Sbjct: 179 GALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTG 238
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
QP+EKVQQYTERDRFLS +EA+EFGLIDG+LETEY
Sbjct: 239 QPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273
>gi|255636441|gb|ACU18559.1| unknown [Glycine max]
Length = 273
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/275 (74%), Positives = 230/275 (83%), Gaps = 6/275 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV A+S AS SF+ S R+ + FS+RN SI S+LP+PYG SS GLS ++RG
Sbjct: 1 MVPQALSVPASASFTIASRTRSPSHLVFSHRNPC-SIASSLPNPYGHSSGVGLSSKSRGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
PLK+DEK+ SY I K NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 PLKLDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQ 118
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATIDE+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A++LAGGEKGMRYAMPNARIM++QPQSG GGHVEDV+RQVNEAV SRHKID+MY+ FTG
Sbjct: 179 GALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTG 238
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
QP+EKVQQYTERDRFLS EA+EFG IDG+LETEY
Sbjct: 239 QPLEKVQQYTERDRFLSVFEALEFGFIDGVLETEY 273
>gi|224080315|ref|XP_002306094.1| predicted protein [Populus trichocarpa]
gi|118485273|gb|ABK94496.1| unknown [Populus trichocarpa]
gi|222849058|gb|EEE86605.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/271 (74%), Positives = 226/271 (83%), Gaps = 11/271 (4%)
Query: 3 ASAISA-SLSFSATSLNRTFA-SFFSNRNSSRSIVSALPSPYGDSSSGLSIRNRGLPLKI 60
ASAISA + SFS ++ + S FS+R +S +VSALP PY DSS+ LS+R I
Sbjct: 4 ASAISAPATSFSIFPRAKSPSLSLFSHRRNS--VVSALPRPYSDSSTRLSLR-------I 54
Query: 61 DEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQR 120
DEK F + SY + K NPP+MPAVMTPGGP+DLSSVLFRNRIIFIGQPINS VAQR
Sbjct: 55 DEKGFRDAKQSYVTVEAKGGNPPIMPAVMTPGGPMDLSSVLFRNRIIFIGQPINSQVAQR 114
Query: 121 AISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 180
ISQLVTLATIDE DIL+YLNCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ A++
Sbjct: 115 VISQLVTLATIDEKTDILLYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALL 174
Query: 181 LAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIE 240
L+GGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV +RHKID+MYA FTGQP+E
Sbjct: 175 LSGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQARHKIDQMYATFTGQPLE 234
Query: 241 KVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
KVQQYTERDRFLS +EAMEFGLIDGILETEY
Sbjct: 235 KVQQYTERDRFLSTSEAMEFGLIDGILETEY 265
>gi|356545265|ref|XP_003541065.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Glycine max]
Length = 273
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/275 (73%), Positives = 228/275 (82%), Gaps = 6/275 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV A+S AS S + S R+ + FS RN SI S+LP+PYG SS GLS ++RG
Sbjct: 1 MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPC-SIASSLPNPYGHSSEVGLSSKSRGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
PLK DEK+ SY I K NPP+ PAVMTPGGPLDL+SVLFRNRIIFIGQP+NS
Sbjct: 60 PLKHDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQ 118
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATI+E+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A++LAGGEKGMRYAMPNARI ++QPQSG GGHVEDV+RQVNEAV SRHKID+MY+ FTG
Sbjct: 179 GALLLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTG 238
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
QP+EKVQQYTERDRFLS +EA+EFGLIDG+LETEY
Sbjct: 239 QPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273
>gi|359475286|ref|XP_003631636.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Vitis vinifera]
gi|297741435|emb|CBI32566.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/272 (75%), Positives = 229/272 (84%), Gaps = 4/272 (1%)
Query: 1 MVASAISASLSFSATSLNRTFA-SFFSNRNSSRSIVSALPSPYGDSSSGLSIRNRGLPLK 59
MVASAIS +LS S S N + + SFFS R S++ IVSAL SS GLS + GL LK
Sbjct: 1 MVASAISTTLSSSIVSRNTSSSISFFSPRYSTKPIVSALSK---SSSIGLSSKTSGLSLK 57
Query: 60 IDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQ 119
+DE+ + SY I K NPP+ P+VMTPGGPLDLS+VLFR+RIIFIGQPINSMVAQ
Sbjct: 58 VDERGRHAGNPSYGAIEAKKGNPPVAPSVMTPGGPLDLSTVLFRSRIIFIGQPINSMVAQ 117
Query: 120 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 179
R ISQLVTLA IDEDADILMYLNCPGGS YSVLAIYDCM+WIKPKVGTVCFGVAASQ A+
Sbjct: 118 RVISQLVTLAAIDEDADILMYLNCPGGSTYSVLAIYDCMAWIKPKVGTVCFGVAASQGAL 177
Query: 180 ILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPI 239
+LAGGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV SRHKID+MYAAFTGQP+
Sbjct: 178 LLAGGEKGMRYAMPNARIMVHQPQGGCGGHVEDVRRQVNEAVQSRHKIDKMYAAFTGQPL 237
Query: 240 EKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
E+VQQYTERDRFLSA+EAMEFG IDGILETEY
Sbjct: 238 EQVQQYTERDRFLSASEAMEFGFIDGILETEY 269
>gi|388515053|gb|AFK45588.1| unknown [Lotus japonicus]
Length = 275
Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/276 (72%), Positives = 226/276 (81%), Gaps = 6/276 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS--GLSIRNRG 55
M A A+S A+ +F S T + FS+RN + I S L SPYG SS GLS ++ G
Sbjct: 1 MAAQAVSVPATATFPIASRRNTPSHLAFSHRNLCQ-IASNLSSPYGGHSSKFGLSSKSPG 59
Query: 56 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 115
PLK+DEK+ SY I K NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+N+
Sbjct: 60 FPLKLDEKNTYDASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNA 119
Query: 116 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 175
VAQR ISQLVTLATID +ADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAAS
Sbjct: 120 QVAQRVISQLVTLATIDPNADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAAS 179
Query: 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT 235
Q A++LAGGEKGMRY+MPN+RIM++QPQSG GGHVEDV+RQVNEAV SRHKID+MY+AFT
Sbjct: 180 QGALLLAGGEKGMRYSMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFT 239
Query: 236 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
GQPIEKVQQYTERD FLS +EA+EFGLIDG+LETEY
Sbjct: 240 GQPIEKVQQYTERDHFLSVSEALEFGLIDGVLETEY 275
>gi|297844024|ref|XP_002889893.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp.
lyrata]
gi|297335735|gb|EFH66152.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp.
lyrata]
Length = 271
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/276 (72%), Positives = 227/276 (82%), Gaps = 10/276 (3%)
Query: 1 MVASAISA--SLSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDS-SSGLSIRNRG 55
M AIS LSFS+ + N S+ S+ RN R IVSALPSPYGDS +GLS G
Sbjct: 1 MAGLAISPPLGLSFSSRTRNPKPTSYLSHNPRNPIRRIVSALPSPYGDSLKAGLSSNVSG 60
Query: 56 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 115
P+KID KD + +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+
Sbjct: 61 SPIKIDNKD-----PRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINA 115
Query: 116 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 175
VAQR ISQLVTLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVAAS
Sbjct: 116 QVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAAS 175
Query: 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT 235
Q A++LAGGEKGMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R KIDRMYAAFT
Sbjct: 176 QGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFT 235
Query: 236 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
GQP+EKVQQYTERDRFLSA+EA+EFGLIDG+LETEY
Sbjct: 236 GQPLEKVQQYTERDRFLSASEALEFGLIDGLLETEY 271
>gi|255646657|gb|ACU23802.1| unknown [Glycine max]
Length = 273
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/275 (72%), Positives = 224/275 (81%), Gaps = 6/275 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV A+S AS S + S R+ + FS RN SI S+LP+PYG SS GLS ++RG
Sbjct: 1 MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPC-SIASSLPNPYGHSSEVGLSSKSRGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
PLK DEK+ SY I K NPP+ PAVMTPGGPLDL+SVLFRNRIIFIGQP+NS
Sbjct: 60 PLKHDEKNIHGASTSYGTIEAKG-NPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQ 118
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATI+E+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A+ LAGGEKGMRYAMPNARI ++QPQSG GGHVEDV+RQVNEAV SRHKID+MY+ FTG
Sbjct: 179 GALFLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTG 238
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
QP+EKVQQYTERDRFL EA+EFG IDG+LETEY
Sbjct: 239 QPLEKVQQYTERDRFLFVFEALEFGFIDGVLETEY 273
>gi|18391311|ref|NP_563893.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
thaliana]
gi|75313132|sp|Q9SAA2.1|CLPP6_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic; AltName: Full=Endopeptidase ClpP6;
Short=nClpP6; AltName: Full=nClpP1; Flags: Precursor
gi|4835782|gb|AAD30248.1|AC007296_9 Identical to gb|AF016621 ATP-dependent Clp protease proteolytic
subunit from Arabidopsis thaliana and is a member of the
PF|00574 CLP_protease family. ESTs gb|F13836 and
gb|F13997 come from this gene [Arabidopsis thaliana]
gi|13194778|gb|AAK15551.1|AF348580_1 putative ATP-dependent Clp protease proteolytic subunit ClpP6
[Arabidopsis thaliana]
gi|21592854|gb|AAM64804.1| ATP-dependent Clp protease proteolytic subunit (ClpP6) [Arabidopsis
thaliana]
gi|110737993|dbj|BAF00932.1| putative ATP-dependent Clp protease proteolytic subunit
[Arabidopsis thaliana]
gi|332190657|gb|AEE28778.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
thaliana]
Length = 271
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/276 (72%), Positives = 225/276 (81%), Gaps = 10/276 (3%)
Query: 1 MVASAISA--SLSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDS-SSGLSIRNRG 55
M AIS LSFS+ + N SF S+ RN R IVSAL SPYGDS +GLS G
Sbjct: 1 MAGLAISPPLGLSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSG 60
Query: 56 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 115
P+KID K + +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+
Sbjct: 61 SPIKIDNK-----APRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINA 115
Query: 116 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 175
VAQR ISQLVTLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVAAS
Sbjct: 116 QVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAAS 175
Query: 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT 235
Q A++LAGGEKGMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R KIDRMYAAFT
Sbjct: 176 QGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFT 235
Query: 236 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
GQP+EKVQQYTERDRFLSA+EA+EFGLIDG+LETEY
Sbjct: 236 GQPLEKVQQYTERDRFLSASEALEFGLIDGLLETEY 271
>gi|388520211|gb|AFK48167.1| unknown [Lotus japonicus]
Length = 275
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/276 (71%), Positives = 226/276 (81%), Gaps = 6/276 (2%)
Query: 1 MVASAIS--ASLSFS-ATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSS--GLSIRNRG 55
M A A+S A+ +FS A+ N FS+RN + I S L SPYG SS GLS ++ G
Sbjct: 1 MAAQAVSVPATATFSIASRRNAPSHLAFSHRNLCQ-IASNLSSPYGGHSSKFGLSSKSPG 59
Query: 56 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 115
PLK+DEK+ SY I K NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+N+
Sbjct: 60 FPLKLDEKNTYDASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNA 119
Query: 116 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 175
VAQR +SQLVTLATI +ADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVC GVAAS
Sbjct: 120 QVAQRVVSQLVTLATIYPNADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCSGVAAS 179
Query: 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT 235
Q A++LAGGEKGMRY+MPN+RIM++QPQSG GGHVEDV+RQVNEAV SRHKID+MY+AFT
Sbjct: 180 QGALLLAGGEKGMRYSMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFT 239
Query: 236 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
GQPIEKVQQYTERDRFLS +EA+EFGLIDG+LETEY
Sbjct: 240 GQPIEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 275
>gi|2827888|gb|AAB99906.1| ATP-dependent Clp protease proteolytic subunit [Arabidopsis
thaliana]
Length = 271
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/276 (71%), Positives = 221/276 (80%), Gaps = 10/276 (3%)
Query: 1 MVASAISA--SLSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDS-SSGLSIRNRG 55
M AIS LSFS+ + N SF S+ RN R IVSAL SPYGDS +GLS G
Sbjct: 1 MAGLAISPPLGLSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSG 60
Query: 56 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 115
P+KID K + +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+
Sbjct: 61 SPIKIDNK-----APRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINA 115
Query: 116 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 175
VAQR ISQLVTLA+ID+ +DILMYLNCPGGS YSVL IYDCMSWIKPKVGTV FGVAAS
Sbjct: 116 QVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLTIYDCMSWIKPKVGTVAFGVAAS 175
Query: 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT 235
Q A LAGGEKGMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R KIDRMYAAFT
Sbjct: 176 QGAFFLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFT 235
Query: 236 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
GQP+EKVQQYTERDRFLSA+EA EFGLIDG+LETEY
Sbjct: 236 GQPLEKVQQYTERDRFLSASEAFEFGLIDGLLETEY 271
>gi|334182483|ref|NP_001184966.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
thaliana]
gi|332190658|gb|AEE28779.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
thaliana]
Length = 289
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/289 (69%), Positives = 226/289 (78%), Gaps = 18/289 (6%)
Query: 1 MVASAISA--SLSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDS-SSGLSIRNRG 55
M AIS LSFS+ + N SF S+ RN R IVSAL SPYGDS +GLS G
Sbjct: 1 MAGLAISPPLGLSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSG 60
Query: 56 LPLKIDEKDFCSTEHS-------------YKIISGKNDNPPLMPAVMTPGGPLDLSSVLF 102
P+KID K S + +I K NPP+MP+VMTPGGPLDLSSVLF
Sbjct: 61 SPIKIDNKAPSSLPLPILNILKSSTVYFIFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLF 120
Query: 103 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK 162
RNRIIFIGQPIN+ VAQR ISQLVTLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIK
Sbjct: 121 RNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIK 180
Query: 163 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVI 222
PKVGTV FGVAASQ A++LAGGEKGMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+
Sbjct: 181 PKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIE 240
Query: 223 SRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
+R KIDRMYAAFTGQP+EKVQQYTERDRFLSA+EA+EFGLIDG+LETEY
Sbjct: 241 ARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLETEY 289
>gi|357473191|ref|XP_003606880.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|355507935|gb|AES89077.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|388499646|gb|AFK37889.1| unknown [Medicago truncatula]
Length = 274
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/275 (68%), Positives = 221/275 (80%), Gaps = 5/275 (1%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
LK+DEK SY +I K NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 RLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+K+++M++AFTG
Sbjct: 180 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRYKMEKMFSAFTG 239
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
Q +EKVQ+YTERD FLS +EA+EFGLIDG+LETEY
Sbjct: 240 QALEKVQEYTERDSFLSVSEALEFGLIDGVLETEY 274
>gi|224103437|ref|XP_002313056.1| predicted protein [Populus trichocarpa]
gi|222849464|gb|EEE87011.1| predicted protein [Populus trichocarpa]
Length = 246
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/268 (71%), Positives = 209/268 (77%), Gaps = 29/268 (10%)
Query: 4 SAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGLSIRNRGLPLKIDEK 63
SA +A S S+ + + + F RNS +VSALP P DSS+ L R
Sbjct: 8 SAPAAIFSISSRTKPPSLSIFSHGRNS---VVSALPRPSSDSSTSLKARG---------- 54
Query: 64 DFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAIS 123
NPP+MPAVMTPGGPLDLSSVLFRNRIIFIGQPINS VAQR IS
Sbjct: 55 ----------------GNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSQVAQRVIS 98
Query: 124 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 183
QLVTLATIDE+ADILMYLNCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ A++LAG
Sbjct: 99 QLVTLATIDENADILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAG 158
Query: 184 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243
GEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV +RHKID+MYA FTGQP+EKVQ
Sbjct: 159 GEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQARHKIDQMYAVFTGQPLEKVQ 218
Query: 244 QYTERDRFLSAAEAMEFGLIDGILETEY 271
QYTERDRFLS +EAMEFGLIDGILETEY
Sbjct: 219 QYTERDRFLSTSEAMEFGLIDGILETEY 246
>gi|350535034|ref|NP_001234684.1| clp-like energy-dependent protease [Solanum lycopersicum]
gi|602758|gb|AAA81878.1| clp-like energy-dependent protease [Solanum lycopersicum]
Length = 275
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/275 (69%), Positives = 222/275 (80%), Gaps = 4/275 (1%)
Query: 1 MVASAISASLSFSATSLNRTFASFFSNRNSS-RSIVSALPSPYGDSSS-GLSIRNRGLPL 58
MV SAI+ + +S ++T S + S +++VS L SPY DSS G S + G+PL
Sbjct: 1 MVTSAIAGTSIVPVSSRHQTSFSSLLSSRSLRKNVVSVLRSPYSDSSDIGFSSKKLGIPL 60
Query: 59 KIDE-KDFCSTEHSYKIISGKND-NPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
K +E + T SY +I K NPP+MPAVMTP G LDLS+VLFRNRIIFIGQP+NS
Sbjct: 61 KFNEYESGAHTNSSYGVIVAKEGANPPIMPAVMTPVGALDLSTVLFRNRIIFIGQPVNSA 120
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQ+ ISQLVTLATIDE+ADIL+YLNCPGGS YSVLAIYDCMSWIKPKVGTVCFG AASQ
Sbjct: 121 VAQKVISQLVTLATIDENADILIYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGAAASQ 180
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A++LAGGEKGMRYAMPNARIM++QPQSG GGHVEDV+RQVNEAV SR K+D+MYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRQKVDKMYAAFTG 240
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
Q IE +Q YTERDRF+S+AEAMEFGLIDG+LETEY
Sbjct: 241 QSIEMIQTYTERDRFMSSAEAMEFGLIDGVLETEY 275
>gi|217073352|gb|ACJ85035.1| unknown [Medicago truncatula]
Length = 274
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/275 (68%), Positives = 220/275 (80%), Gaps = 5/275 (1%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
LK+DEK SY +I K NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 RLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+K+++M++AFTG
Sbjct: 180 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRYKMEKMFSAFTG 239
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
Q +EKVQ+YTERD FLS +EA+E GLIDG+LETEY
Sbjct: 240 QALEKVQEYTERDSFLSVSEALELGLIDGVLETEY 274
>gi|2921510|gb|AAC04810.1| clp-like energy-dependent protease [Fritillaria agrestis]
Length = 267
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/217 (79%), Positives = 194/217 (89%), Gaps = 1/217 (0%)
Query: 56 LPLKIDEKDFCSTEHSYK-IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPIN 114
LPLK+ + C + Y +I K NPP+MPAVMTPGGPLDLSSVLFRNRIIFIGQP+N
Sbjct: 51 LPLKLTDPASCHSASRYDAVIEAKRGNPPMMPAVMTPGGPLDLSSVLFRNRIIFIGQPVN 110
Query: 115 SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAA 174
S VAQR ISQLVTLATIDE++DIL+YLNCPGGS YS+LAIYDCMSWIKPKVGTVCFGVAA
Sbjct: 111 SQVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAA 170
Query: 175 SQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAF 234
SQ A++LAGGEKGMRY MPNARIM++QPQSG GGHVEDV+RQVNEAV SRHKID+MYAAF
Sbjct: 171 SQGALLLAGGEKGMRYTMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDQMYAAF 230
Query: 235 TGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
TGQ +EKVQ+YTERDRF SA+EA+EFGL+DG+LETEY
Sbjct: 231 TGQTLEKVQEYTERDRFFSASEALEFGLVDGVLETEY 267
>gi|242066888|ref|XP_002454733.1| hypothetical protein SORBIDRAFT_04g036413 [Sorghum bicolor]
gi|241934564|gb|EES07709.1| hypothetical protein SORBIDRAFT_04g036413 [Sorghum bicolor]
Length = 276
Score = 335 bits (860), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 189/220 (85%), Gaps = 1/220 (0%)
Query: 53 NRGLPLKIDEKDFC-STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQ 111
+ G+ + E+ C S+ I++ +N+NPPLMPA+MTPGG LDL++VL NR+IFIGQ
Sbjct: 57 SHGVSSQHAERIHCRSSLRQNTIVASENENPPLMPAIMTPGGALDLATVLLGNRVIFIGQ 116
Query: 112 PINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFG 171
INS VAQR ISQLVTLA +DE+ADIL+YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFG
Sbjct: 117 YINSQVAQRVISQLVTLAAVDEEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFG 176
Query: 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMY 231
V ASQAAIILAGGEKGMRYAMPNAR+M++QPQ GS G+VE+V+RQV E V +R K+D+M+
Sbjct: 177 VVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNVEEVRRQVGETVYARDKVDKMF 236
Query: 232 AAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
AAFTGQP++ VQQ+TERDRF+S++EAM+FGL+D +LET Y
Sbjct: 237 AAFTGQPLDMVQQWTERDRFMSSSEAMDFGLVDALLETRY 276
>gi|9968665|emb|CAC06126.1| putative ATP-dependent clp serine protease proteolytic subunit
[Pisum sativum]
Length = 246
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 162/225 (72%), Positives = 184/225 (81%), Gaps = 2/225 (0%)
Query: 25 FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPP 83
FS+RN +I S+LPSPY SS GLS + G LK DEK+ SY +I K NPP
Sbjct: 22 FSHRNPC-TIASSLPSPYVHSSKIGLSSKAHGFRLKFDEKNTHDVSTSYGVIEAKKGNPP 80
Query: 84 LMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC 143
+ PAVMTPGG +DLSSVLFRNRIIFIGQPIN+ +AQR ISQLVTLATID DADILMY+NC
Sbjct: 81 ISPAVMTPGGAIDLSSVLFRNRIIFIGQPINAQMAQRVISQLVTLATIDPDADILMYINC 140
Query: 144 PGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 203
GGS YSVLA+YDCMSWIKPKVGTVCFGVAASQA ++LAGGEKGMRY+MPNARIM+ QP+
Sbjct: 141 AGGSTYSVLAVYDCMSWIKPKVGTVCFGVAASQATLLLAGGEKGMRYSMPNARIMMGQPR 200
Query: 204 SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 248
G GGHVEDVKR VNEAV SRHK+D M++AFTG PIE VQ+YT+R
Sbjct: 201 CGFGGHVEDVKRLVNEAVQSRHKMDNMFSAFTGLPIETVQEYTDR 245
>gi|226509256|ref|NP_001140712.1| uncharacterized protein LOC100272787 [Zea mays]
gi|194689904|gb|ACF79036.1| unknown [Zea mays]
gi|194700704|gb|ACF84436.1| unknown [Zea mays]
gi|194702420|gb|ACF85294.1| unknown [Zea mays]
gi|194703926|gb|ACF86047.1| unknown [Zea mays]
gi|194708092|gb|ACF88130.1| unknown [Zea mays]
gi|413939370|gb|AFW73921.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 292
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 149/198 (75%), Positives = 180/198 (90%)
Query: 74 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
I++ +N+NPPLMPA+MTPGG LDL++VL NRIIFIGQ INS VAQR ISQLVTLA IDE
Sbjct: 95 IVASENENPPLMPAIMTPGGALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAIDE 154
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
+ADIL+YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAAIILAGGEKGMRYAMP
Sbjct: 155 EADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMP 214
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
NAR+M++QPQ GS G+VE+V+RQV E + +R K+D+M+AAFTGQP++ VQQ+TERDRF+S
Sbjct: 215 NARVMIHQPQGGSEGNVEEVRRQVGETIYARDKVDKMFAAFTGQPLDMVQQWTERDRFMS 274
Query: 254 AAEAMEFGLIDGILETEY 271
++EAM+FGL+D +LET Y
Sbjct: 275 SSEAMDFGLLDALLETRY 292
>gi|195644476|gb|ACG41706.1| hypothetical protein [Zea mays]
Length = 292
Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 149/198 (75%), Positives = 180/198 (90%)
Query: 74 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
I++ +N+NPPLMPA+MTPGG LDL++VL NRIIFIGQ INS VAQR ISQLVTLA IDE
Sbjct: 95 IVASENENPPLMPAIMTPGGALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAIDE 154
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
+ADIL+YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAAIILAGGEKGMRYAMP
Sbjct: 155 EADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMP 214
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
NAR+M++QPQ GS G+VE+V+RQV E + +R K+D+M+AAFTGQP++ VQQ+TERDRF+S
Sbjct: 215 NARVMIHQPQGGSEGNVEEVRRQVGETIYARDKVDKMFAAFTGQPLDMVQQWTERDRFMS 274
Query: 254 AAEAMEFGLIDGILETEY 271
++EAM+FGL+D +LET Y
Sbjct: 275 SSEAMDFGLLDALLETRY 292
>gi|147800090|emb|CAN70935.1| hypothetical protein VITISV_032484 [Vitis vinifera]
Length = 229
Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 162/217 (74%), Positives = 179/217 (82%), Gaps = 9/217 (4%)
Query: 48 GLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRII 107
GLS + GL LK+D + SY I K NPP+ P+VMTPGGPLDLS+VLFR+RII
Sbjct: 6 GLSSKTSGLSLKVDGXGRHAGNPSYGAIEAKKGNPPVAPSVMTPGGPLDLSTVLFRSRII 65
Query: 108 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGT 167
FIGQPINSMVAQR ISQLVTLA IDEDADILMYLNCPGGS YSVLAIYDCM+WIKPKVGT
Sbjct: 66 FIGQPINSMVAQRVISQLVTLAAIDEDADILMYLNCPGGSTYSVLAIYDCMAWIKPKVGT 125
Query: 168 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKI 227
VCFGVAASQ A++LAGGEKGMRYAMPNARIM GHVEDV+RQVNEAV SRHKI
Sbjct: 126 VCFGVAASQGALLLAGGEKGMRYAMPNARIM---------GHVEDVRRQVNEAVQSRHKI 176
Query: 228 DRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLID 264
D+MYAAFTGQP+E+VQQYTERDRFLSA+E +I+
Sbjct: 177 DKMYAAFTGQPLEQVQQYTERDRFLSASEIAVLRMIN 213
>gi|115453497|ref|NP_001050349.1| Os03g0411500 [Oryza sativa Japonica Group]
gi|57222443|gb|AAO37504.2| putative clp-like energy-dependent protease [Oryza sativa Japonica
Group]
gi|108708774|gb|ABF96569.1| Clp protease family protein, expressed [Oryza sativa Japonica
Group]
gi|113548820|dbj|BAF12263.1| Os03g0411500 [Oryza sativa Japonica Group]
gi|215678629|dbj|BAG92284.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765082|dbj|BAG86779.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 259
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 164/272 (60%), Positives = 202/272 (74%), Gaps = 14/272 (5%)
Query: 1 MVASAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGLSIRNRGLPLKI 60
M AIS L+ A+ S R S ALP P G+ K+
Sbjct: 1 MAPMAISTPLALRASP-----TRLLSRRRSGAKSGVALPGP--------QFVPPGISSKL 47
Query: 61 DEKDFC-STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQ 119
DE+ C S+ I++ +N+NPPLMPA+MTP G LDL++VL NRIIFIGQ INS VAQ
Sbjct: 48 DERIHCHSSLRKNTIVASENENPPLMPAIMTPAGALDLATVLLGNRIIFIGQYINSQVAQ 107
Query: 120 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 179
R ISQLVTLA +DE+ADIL+YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAAI
Sbjct: 108 RVISQLVTLAAVDEEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAI 167
Query: 180 ILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPI 239
ILAGGEKGMRYAMPNAR+M++QPQ S G+VE+V+RQV E + +R K+D+M+AAFTGQ +
Sbjct: 168 ILAGGEKGMRYAMPNARVMIHQPQGVSEGNVEEVRRQVGETIYARDKVDKMFAAFTGQTL 227
Query: 240 EKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
+ VQQ+TERDRF+S++EAM+FGL+D +LET Y
Sbjct: 228 DMVQQWTERDRFMSSSEAMDFGLVDALLETRY 259
>gi|357111858|ref|XP_003557727.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 259
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 153/227 (67%), Positives = 189/227 (83%), Gaps = 7/227 (3%)
Query: 48 GLSIRNRGLPLKIDEKDFCSTEHSY----KIISGKNDNPPLMPAVMTPGGPLDLSSVLFR 103
GL G+ ++D + C HSY I++ +N+NPPLMPA+MTPGGPLDL++VL
Sbjct: 35 GLQFVTPGVSARLDGRIHC---HSYLRQNAIVASENENPPLMPAIMTPGGPLDLATVLLG 91
Query: 104 NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKP 163
NRIIFIGQ INS VAQR ISQLVTL+ IDE+ DIL+YLNCPGGS+YS+LAIYDCMSWI P
Sbjct: 92 NRIIFIGQYINSQVAQRVISQLVTLSAIDEEGDILIYLNCPGGSLYSILAIYDCMSWIAP 151
Query: 164 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVIS 223
KVGTVCFGV ASQAAIILAGGEKGMRYAMPNAR+M++QPQ GS G+ E+V+RQV E + +
Sbjct: 152 KVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNTEEVRRQVGETIYA 211
Query: 224 RHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
R K+D+M+AAFTGQP++ VQQ+TERDRF+S++EAM+FGL+D +LET
Sbjct: 212 RDKVDKMFAAFTGQPLDMVQQWTERDRFMSSSEAMDFGLVDALLETR 258
>gi|357111860|ref|XP_003557728.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 266
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 153/227 (67%), Positives = 189/227 (83%), Gaps = 7/227 (3%)
Query: 48 GLSIRNRGLPLKIDEKDFCSTEHSY----KIISGKNDNPPLMPAVMTPGGPLDLSSVLFR 103
GL G+ ++D + C HSY I++ +N+NPPLMPA+MTPGGPLDL++VL
Sbjct: 42 GLQFVTPGVSARLDGRIHC---HSYLRQNAIVASENENPPLMPAIMTPGGPLDLATVLLG 98
Query: 104 NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKP 163
NRIIFIGQ INS VAQR ISQLVTL+ IDE+ DIL+YLNCPGGS+YS+LAIYDCMSWI P
Sbjct: 99 NRIIFIGQYINSQVAQRVISQLVTLSAIDEEGDILIYLNCPGGSLYSILAIYDCMSWIAP 158
Query: 164 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVIS 223
KVGTVCFGV ASQAAIILAGGEKGMRYAMPNAR+M++QPQ GS G+ E+V+RQV E + +
Sbjct: 159 KVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNTEEVRRQVGETIYA 218
Query: 224 RHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
R K+D+M+AAFTGQP++ VQQ+TERDRF+S++EAM+FGL+D +LET
Sbjct: 219 RDKVDKMFAAFTGQPLDMVQQWTERDRFMSSSEAMDFGLVDALLETR 265
>gi|413939369|gb|AFW73920.1| hypothetical protein ZEAMMB73_577797 [Zea mays]
Length = 294
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 149/200 (74%), Positives = 180/200 (90%), Gaps = 2/200 (1%)
Query: 74 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
I++ +N+NPPLMPA+MTPGG LDL++VL NRIIFIGQ INS VAQR ISQLVTLA IDE
Sbjct: 95 IVASENENPPLMPAIMTPGGALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAIDE 154
Query: 134 DADIL--MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 191
+ADIL +YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAAIILAGGEKGMRYA
Sbjct: 155 EADILVSIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYA 214
Query: 192 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251
MPNAR+M++QPQ GS G+VE+V+RQV E + +R K+D+M+AAFTGQP++ VQQ+TERDRF
Sbjct: 215 MPNARVMIHQPQGGSEGNVEEVRRQVGETIYARDKVDKMFAAFTGQPLDMVQQWTERDRF 274
Query: 252 LSAAEAMEFGLIDGILETEY 271
+S++EAM+FGL+D +LET Y
Sbjct: 275 MSSSEAMDFGLLDALLETRY 294
>gi|224551502|gb|ACN54193.1| Clp-P protease subunit [Triticum aestivum]
Length = 266
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 149/224 (66%), Positives = 191/224 (85%), Gaps = 3/224 (1%)
Query: 48 GLSIRNRGLPLKIDEKDFCSTEHSYK--IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNR 105
GL + G+ ++DE+ S ++ K I++ +N+NPPLMPA+MTPGGPLDL++VL NR
Sbjct: 42 GLQVLTSGVSARLDER-IHSQSYTRKNTIVASENENPPLMPAIMTPGGPLDLATVLLGNR 100
Query: 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKV 165
IIFIGQ +NS VAQR ISQLVTL+ IDE+ DIL+YLNCPGGS+YS+LAIYDCMSWI PKV
Sbjct: 101 IIFIGQYVNSQVAQRVISQLVTLSAIDEEGDILIYLNCPGGSLYSILAIYDCMSWISPKV 160
Query: 166 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 225
GTVCFGV ASQAAIILAGGEKGMRYAMPNAR+M++QPQ GS G+ E+V+RQV E + +R
Sbjct: 161 GTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNTEEVRRQVGETIYARD 220
Query: 226 KIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
K+D+M+A+FTG+PI+ V+Q+TERDRF+S++EAM+FGL+D +LET
Sbjct: 221 KVDKMFASFTGRPIDIVRQWTERDRFMSSSEAMDFGLVDALLET 264
>gi|218193030|gb|EEC75457.1| hypothetical protein OsI_12017 [Oryza sativa Indica Group]
gi|222625110|gb|EEE59242.1| hypothetical protein OsJ_11243 [Oryza sativa Japonica Group]
Length = 278
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 164/291 (56%), Positives = 202/291 (69%), Gaps = 33/291 (11%)
Query: 1 MVASAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGLSIRNRGLPLKI 60
M AIS L+ A+ S R S ALP P G+ K+
Sbjct: 1 MAPMAISTPLALRASP-----TRLLSRRRSGAKSGVALPGP--------QFVPPGISSKL 47
Query: 61 DEKDFC-STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQ 119
DE+ C S+ I++ +N+NPPLMPA+MTP G LDL++VL NRIIFIGQ INS VAQ
Sbjct: 48 DERIHCHSSLRKNTIVASENENPPLMPAIMTPAGALDLATVLLGNRIIFIGQYINSQVAQ 107
Query: 120 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW------------------- 160
R ISQLVTLA +DE+ADIL+YLNCPGGS+YS+LAIYDCMSW
Sbjct: 108 RVISQLVTLAAVDEEADILIYLNCPGGSLYSILAIYDCMSWYILDMSICHAETVLIGFGL 167
Query: 161 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 220
IKPKVGTVCFGV ASQAAIILAGGEKGMRYAMPNAR+M++QPQ S G+VE+V+RQV E
Sbjct: 168 IKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGVSEGNVEEVRRQVGET 227
Query: 221 VISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
+ +R K+D+M+AAFTGQ ++ VQQ+TERDRF+S++EAM+FGL+D +LET Y
Sbjct: 228 IYARDKVDKMFAAFTGQTLDMVQQWTERDRFMSSSEAMDFGLVDALLETRY 278
>gi|357473195|ref|XP_003606882.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|355507937|gb|AES89079.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
Length = 242
Score = 320 bits (820), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 167/275 (60%), Positives = 197/275 (71%), Gaps = 37/275 (13%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
LK+DEK V RNRIIFIGQP+NS
Sbjct: 60 RLKLDEKS--------------------------------THDVGTRNRIIFIGQPVNSQ 87
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 88 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 147
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+K+++M++AFTG
Sbjct: 148 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRYKMEKMFSAFTG 207
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
Q +EKVQ+YTERD FLS +EA+EFGLIDG+LETEY
Sbjct: 208 QALEKVQEYTERDSFLSVSEALEFGLIDGVLETEY 242
>gi|302771047|ref|XP_002968942.1| hypothetical protein SELMODRAFT_90346 [Selaginella moellendorffii]
gi|300163447|gb|EFJ30058.1| hypothetical protein SELMODRAFT_90346 [Selaginella moellendorffii]
Length = 195
Score = 312 bits (800), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 143/194 (73%), Positives = 166/194 (85%)
Query: 78 KNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
K PP+ PAV+TP G DL+S++ R+RIIFIGQPINS VAQR ISQLV LA IDE+ DI
Sbjct: 2 KKGAPPMAPAVITPAGIADLTSIMLRSRIIFIGQPINSQVAQRVISQLVMLAAIDEEKDI 61
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+NCPGGS YSVLAIYDCMSWIKP+V TVCFG+AASQ A+ILAGG KG+R+AMPN+R+
Sbjct: 62 QLYINCPGGSTYSVLAIYDCMSWIKPRVSTVCFGMAASQGALILAGGTKGLRFAMPNSRV 121
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QPQ G GG +EDV+RQVNE V SR KID+MYAAFTGQP+E VQ YTERD F SAAEA
Sbjct: 122 MIHQPQGGCGGTMEDVRRQVNEVVASRDKIDKMYAAFTGQPLEIVQTYTERDHFFSAAEA 181
Query: 258 MEFGLIDGILETEY 271
MEFGLIDG+LETEY
Sbjct: 182 MEFGLIDGLLETEY 195
>gi|302816621|ref|XP_002989989.1| hypothetical protein SELMODRAFT_130729 [Selaginella moellendorffii]
gi|300142300|gb|EFJ09002.1| hypothetical protein SELMODRAFT_130729 [Selaginella moellendorffii]
Length = 203
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 143/198 (72%), Positives = 168/198 (84%)
Query: 74 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
I + K P + PAV+TP G DL+S++ R+RIIFIGQPINS VAQR ISQLV LA IDE
Sbjct: 6 IRAAKKGAPLMAPAVITPAGIADLTSIMLRSRIIFIGQPINSQVAQRVISQLVMLAAIDE 65
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
+ DI +Y+NCPGGS YSVLAIYDCMSWIKP+VGTVCFG+AASQ A+ILAGG KG+R+AMP
Sbjct: 66 EKDIQLYINCPGGSTYSVLAIYDCMSWIKPRVGTVCFGMAASQGALILAGGTKGLRFAMP 125
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
N+R+M++QPQ G GG +EDV+RQVNE V SR KID+MY+AFTGQP+E VQ YTERD F S
Sbjct: 126 NSRVMIHQPQGGCGGTMEDVRRQVNEVVASRDKIDKMYSAFTGQPLEIVQTYTERDHFFS 185
Query: 254 AAEAMEFGLIDGILETEY 271
AAEAMEFGLIDG+LETEY
Sbjct: 186 AAEAMEFGLIDGLLETEY 203
>gi|357473193|ref|XP_003606881.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|355507936|gb|AES89078.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
Length = 237
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/229 (67%), Positives = 178/229 (77%), Gaps = 5/229 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
LK+DEK SY +I K NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 RLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 225
++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+
Sbjct: 180 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRY 228
>gi|168050943|ref|XP_001777916.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670676|gb|EDQ57240.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 201
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 167/200 (83%)
Query: 72 YKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 131
Y I + K PP+MPAV+TP GP+DLS+++FRNRIIF+G P+NS VAQ +S+L+TLA I
Sbjct: 2 YNIRAAKKGAPPMMPAVLTPSGPVDLSTLMFRNRIIFVGSPVNSEVAQSVVSKLLTLAAI 61
Query: 132 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 191
+++ +I MY+NCPGGS YS++AIYD M WIKP V TVCFG+AASQ A++LAGG+KG R+A
Sbjct: 62 NDEEEIKMYINCPGGSTYSIMAIYDAMQWIKPDVSTVCFGIAASQGALLLAGGKKGKRFA 121
Query: 192 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251
MPNARIM++QPQ G GG +DV+RQVNE + SR KID+MY+ F QP+E+V+++TERD F
Sbjct: 122 MPNARIMIHQPQGGCGGTADDVRRQVNEVMSSRDKIDQMYSIFCNQPLERVRKFTERDYF 181
Query: 252 LSAAEAMEFGLIDGILETEY 271
SAAEAM+FGLIDG+LETE+
Sbjct: 182 FSAAEAMDFGLIDGLLETEF 201
>gi|168036513|ref|XP_001770751.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677969|gb|EDQ64433.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 195
Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 124/194 (63%), Positives = 163/194 (84%)
Query: 78 KNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
K PP+MPAV+TP GP+DLS+++FRNRIIF+G +NS VAQ IS+L+TLA I+++ +I
Sbjct: 2 KKGAPPMMPAVLTPSGPVDLSTLMFRNRIIFVGSSVNSEVAQSVISKLLTLAAINDEEEI 61
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
MY+NCPGGS YS++AI+D M WIKP V TVCFG+AASQ A++LAGG+KG R+AMPNARI
Sbjct: 62 KMYINCPGGSTYSIMAIFDAMQWIKPDVSTVCFGIAASQGALLLAGGKKGKRFAMPNARI 121
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QPQ G GG +DV+RQVNE + SR KID+MY+ F QP+E+V+++TERD F SAAEA
Sbjct: 122 MIHQPQGGCGGTADDVRRQVNEVMSSRDKIDKMYSTFCNQPLERVRKFTERDYFFSAAEA 181
Query: 258 MEFGLIDGILETEY 271
++FGLIDG+LETE+
Sbjct: 182 LDFGLIDGLLETEF 195
>gi|326519849|dbj|BAK03849.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 228
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 126/221 (57%), Positives = 161/221 (72%), Gaps = 14/221 (6%)
Query: 5 AISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGLSIRNRGLPLKIDEKD 64
AIS +L+ A+ + FS+R + S L G+ + G+ ++DE+
Sbjct: 6 AISTALAIRASP-----SCLFSHRGNGSSASPGL--------RGMQVLTSGVSARLDERI 52
Query: 65 FC-STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAIS 123
S I++ +N+NPPLMPA+MTPGG LDL++VL NRIIFIGQ +NS VAQR IS
Sbjct: 53 HGQSYLRKNTIVASENENPPLMPAIMTPGGSLDLATVLLGNRIIFIGQYVNSQVAQRVIS 112
Query: 124 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 183
QLV+L+ IDE+ D+L+YLNCPGGS+YS+LAIYDCMSWI PKVGTVCFGV ASQAAIILAG
Sbjct: 113 QLVSLSAIDEEGDVLIYLNCPGGSLYSILAIYDCMSWITPKVGTVCFGVVASQAAIILAG 172
Query: 184 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISR 224
GEKGMRYAMPNAR+M++QPQ GS G+ E+V+RQV E + +R
Sbjct: 173 GEKGMRYAMPNARVMIHQPQGGSEGNTEEVRRQVGETIYAR 213
>gi|294460153|gb|ADE75659.1| unknown [Picea sitchensis]
Length = 254
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/154 (75%), Positives = 134/154 (87%)
Query: 73 KIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 132
I + K NPP+ P +MTP GPLDL SVL R+R++FIGQPIN+ VAQR ISQL+TLA ID
Sbjct: 100 NIRAAKKGNPPITPGIMTPAGPLDLMSVLLRSRVVFIGQPINAQVAQRVISQLMTLAAID 159
Query: 133 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 192
DADILMYLNCPGGSIYS+LAIYDCMSWIKPKVGTVCFGVAASQAA++LAGGEKGMRYAM
Sbjct: 160 PDADILMYLNCPGGSIYSILAIYDCMSWIKPKVGTVCFGVAASQAALLLAGGEKGMRYAM 219
Query: 193 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHK 226
PN+RIM++QPQ G GG++EDV RQVNE V SR +
Sbjct: 220 PNSRIMIHQPQGGCGGNIEDVWRQVNELVASRDE 253
>gi|388507152|gb|AFK41642.1| unknown [Medicago truncatula]
Length = 202
Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 123/191 (64%), Positives = 142/191 (74%), Gaps = 5/191 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSS-GLSIRNRGL 56
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 57 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 116
LK+DEK S +I K NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 RLKLDEKSTHDVGTSCGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179
Query: 177 AAIILAGGEKG 187
++LAGG +G
Sbjct: 180 GTLLLAGGGEG 190
>gi|410582587|ref|ZP_11319693.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermaerobacter subterraneus DSM 13965]
gi|410505407|gb|EKP94916.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermaerobacter subterraneus DSM 13965]
Length = 199
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 121/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+FIG PI+ +VA I+QL+ L T D D DI +Y+N PGGS+ S LAIY
Sbjct: 19 DIYSRLLKDRIVFIGTPIDDVVANSVIAQLLFLQTDDPDRDISIYINSPGGSVDSGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T C G+AAS AI+LAGG KG RYA+P++RIM++QP S GG DVK
Sbjct: 79 DTMQHIKPDVATYCVGLAASMGAILLAGGTKGKRYALPHSRIMIHQPHSQVGGTAADVKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ + R + + A TGQP+E++++ TERD F++A EA E+G+ID +LE
Sbjct: 139 YADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAEEAKEYGIIDHVLE 191
>gi|317123029|ref|YP_004103032.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermaerobacter marianensis DSM 12885]
gi|315593009|gb|ADU52305.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermaerobacter marianensis DSM 12885]
Length = 199
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 120/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+FIG PI+ +VA I+QL+ L T D D DI +Y+N PGGS+ S LAIY
Sbjct: 19 DIYSRLLKDRIVFIGTPIDDVVANSVIAQLLFLQTDDPDRDISIYINSPGGSVDSGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T C G+AAS AI+LAGG KG RYA+P++RIM++QP S GG DVK
Sbjct: 79 DTMQHIKPDVATYCVGLAASMGAILLAGGTKGKRYALPHSRIMIHQPHSQVGGTASDVKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ + R + + A TGQP+E++++ TERD F++A EA +G+ID +LE
Sbjct: 139 YADQLLKLRQVANEILAKHTGQPLERIERDTERDFFMTAEEAKAYGIIDHVLE 191
>gi|335041121|ref|ZP_08534237.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
gi|334178919|gb|EGL81568.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
Length = 196
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 121/172 (70%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+QL+ LA D + D+ +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGTPIDDHVANSVIAQLLFLAAEDPEKDVSLYINSPGGSVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS + +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVSTICVGLAASMGSFLLAAGAKGKRFALPNSEIMMHQPLGGVKGQAADIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ K++R+YA TGQP+EK+++ T+RD F+SA EA E+GL+D ++
Sbjct: 139 HADWIIKTKQKLNRIYAERTGQPVEKIERDTDRDFFMSAEEAKEYGLVDQVI 190
>gi|218289882|ref|ZP_03494072.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius LAA1]
gi|258511244|ref|YP_003184678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|384134931|ref|YP_005517645.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|218240022|gb|EED07208.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius LAA1]
gi|257477970|gb|ACV58289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|339289016|gb|AEJ43126.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 192
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA ++QL+ LA D D DI MY+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGTPIDDDVANAVVAQLLFLAADDPDKDIQMYINSPGGSVSAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS AA++LA G KG RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTMCVGMAASMAAVLLAAGAKGKRYALPNSEVMIHQPLGGARGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R +++R+ A TGQP+E+V Q T+RD F+SA EA +GLID ++
Sbjct: 139 HARHILKTRERLNRILAERTGQPLERVAQDTDRDNFMSAEEAKAYGLIDEVI 190
>gi|335038541|ref|ZP_08531774.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
gi|334181561|gb|EGL84093.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
Length = 196
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 126/189 (66%), Gaps = 4/189 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ D+ S L ++RIIF+G PI+ VA ++QL+ LA D + DI
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPIDDQVANAVVAQLLFLAAEDPEKDIS 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGSI + +AIYD M +IKPKV T+C G+AAS A +LA GEKG R+A+PN+ +M
Sbjct: 62 LYINSPGGSITAGMAIYDTMQYIKPKVSTICIGLAASMGAFLLAAGEKGKRFALPNSEVM 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D++ + R +++++ A TGQP+E++++ T+RD F+SA EA
Sbjct: 122 IHQPLGGTQGQASDIEIHAKRILKMRDRLNKILAERTGQPLERIERDTDRDHFMSAEEAK 181
Query: 259 EFGLIDGIL 267
+GLID ++
Sbjct: 182 AYGLIDEVI 190
>gi|407472866|ref|YP_006787266.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
acidurici 9a]
gi|407049374|gb|AFS77419.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
acidurici 9a]
Length = 194
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIFI IN + A ++QL+ L + D D DI M
Sbjct: 3 LVPVVVEQTGRGERSYDIYSRLLKDRIIFISDEINDVTASLVVAQLLFLESEDPDKDIQM 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI S AIYD M +IKP V T C G+AAS A +LA G KG R+A+PNA +M+
Sbjct: 63 YINSPGGSITSGFAIYDTMQYIKPDVSTTCIGMAASMGAFLLAAGAKGKRFALPNAEVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G ED+K + +R +++++ + TGQP+E++++ T+RD F+SA EA E
Sbjct: 123 HQPLGGTRGQAEDIKIHAERIIKTREQLNQILSERTGQPLERIEKDTDRDNFMSAEEAKE 182
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 183 YGLIDEVI 190
>gi|430750770|ref|YP_007213678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
gi|430734735|gb|AGA58680.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
Length = 198
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 120/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+QL+ LA D + DI +Y+N PGGS+ + L IY
Sbjct: 19 DIYSRLLKDRIIFLGSPIDDDVANLVIAQLLFLAAEDPEKDIYLYINSPGGSVTAGLGIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A+++L G KG RYA+PN+ +M++QP G G D+K
Sbjct: 79 DTMQYIKPDVSTICVGIAASMASLLLTAGAKGKRYALPNSEVMIHQPLGGVRGQAADIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++HK++++Y TGQP EK+++ T+RD F+SA EA+ +GLID ++
Sbjct: 139 HADWILKTKHKLNQIYVERTGQPYEKIERDTDRDFFMSAEEALAYGLIDKVI 190
>gi|226314841|ref|YP_002774737.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
gi|226097791|dbj|BAH46233.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
Length = 198
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 120/175 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PIN VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDIHLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMHFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ R ++ + A TGQP+E++Q+ T+RD FLSAAEA+E+GLID ++ +E
Sbjct: 139 AAKRILKMRDHLNTILAERTGQPLERIQKDTDRDNFLSAAEAVEYGLIDKVITSE 193
>gi|398814906|ref|ZP_10573583.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
gi|398035724|gb|EJL28955.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
Length = 200
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 120/175 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PIN VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDIHLYINSPGGSITAGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 81 DTMHFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQASDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ R ++ + A TGQP+E++Q+ T+RD FLSAAEA+E+GLID ++ +E
Sbjct: 141 AAKRILKMRDHLNTILAERTGQPLERIQKDTDRDNFLSAAEAVEYGLIDKVITSE 195
>gi|225175200|ref|ZP_03729196.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
alkaliphilus AHT 1]
gi|225169376|gb|EEG78174.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
alkaliphilus AHT 1]
Length = 193
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 122/173 (70%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG PI+ VA I+QL+ L + D + DI +Y+N PGGS+Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFIGSPIDDNVANLVIAQLLFLESEDPEKDINIYVNSPGGSVYAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A++LA G G R+++PN+RIM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGLAASMGAVLLAAGADGKRFSLPNSRIMVHQPLGGAQGQAVDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + R +++ + + TG+P+E++ + T+RD F+SA +A E+GLIDG+LE
Sbjct: 139 HAKEILRIRERLNEILSGHTGKPVEQIARDTDRDYFMSAEQAKEYGLIDGVLE 191
>gi|399050633|ref|ZP_10740728.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
gi|398051596|gb|EJL43914.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
Length = 200
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 119/175 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PIN VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDIHLYINSPGGSITAGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G+ G D++
Sbjct: 81 DTMHFIKPDVSTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQASDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ R ++ + A TGQP+E++Q+ T+RD FLSA EA+E+GLID ++ +E
Sbjct: 141 AAKRILKMRDHLNTILAERTGQPLERIQKDTDRDNFLSAQEAVEYGLIDKVITSE 195
>gi|433542295|ref|ZP_20498724.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
gi|432186391|gb|ELK43863.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
Length = 198
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 119/175 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PIN VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDIHLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMHFIKPDVSTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ R ++ + A TGQP+E++Q+ T+RD FLSA EA+E+GLID ++ +E
Sbjct: 139 AAKRILKMRDHLNTILAERTGQPLERIQKDTDRDNFLSAQEAVEYGLIDKVITSE 193
>gi|16332068|ref|NP_442796.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|451816220|ref|YP_007452672.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|2493737|sp|Q59993.1|CLPP2_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|1001377|dbj|BAA10867.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|407960292|dbj|BAM53532.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|451782189|gb|AGF53158.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
Length = 226
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 128/195 (65%), Gaps = 4/195 (2%)
Query: 77 GKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 132
G N+ ++P V+ G D+ S L R RIIF+G P++ VA ++QL+ L D
Sbjct: 16 GGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAED 75
Query: 133 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 192
+ DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L+GG KG R A+
Sbjct: 76 PEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMAL 135
Query: 193 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252
P++RIM++QP G+ G +++ Q E + + +++ M TGQP+EK+Q+ TERD F+
Sbjct: 136 PSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFM 195
Query: 253 SAAEAMEFGLIDGIL 267
SA EA E+GLID ++
Sbjct: 196 SAEEAKEYGLIDQVI 210
>gi|206901598|ref|YP_002250810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
thermophilum H-6-12]
gi|206740701|gb|ACI19759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
thermophilum H-6-12]
Length = 194
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 130/191 (68%), Gaps = 4/191 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RI+F+G IN VA ++QL+ L + D + DI +
Sbjct: 2 LVPIVIEQTPRGERAYDIYSRLLKSRIVFLGTAINDEVANLVVAQLLFLESEDPEKDIYL 61
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + LAIYD M IKPKV TVC G AAS AAI+LA G+KG RYA+P++R+M+
Sbjct: 62 YINSPGGEVSAGLAIYDTMRHIKPKVATVCVGQAASMAAILLAAGDKGKRYALPHSRVMI 121
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ E + + ++ + A TGQPIEK+++ T+RD F+SA EA E
Sbjct: 122 HQPLGGAYGPAADIEIHTREILKIKRVLNEILAHHTGQPIEKIERDTDRDFFMSAYEAKE 181
Query: 260 FGLIDGILETE 270
+G++D +LE++
Sbjct: 182 YGIVDEVLESK 192
>gi|302800375|ref|XP_002981945.1| hypothetical protein SELMODRAFT_233821 [Selaginella moellendorffii]
gi|302802337|ref|XP_002982924.1| hypothetical protein SELMODRAFT_234106 [Selaginella moellendorffii]
gi|300149514|gb|EFJ16169.1| hypothetical protein SELMODRAFT_234106 [Selaginella moellendorffii]
gi|300150387|gb|EFJ17038.1| hypothetical protein SELMODRAFT_233821 [Selaginella moellendorffii]
Length = 213
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 117/171 (68%)
Query: 100 VLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 159
+L R R +F+G ++ VA ISQL+ L +D +I M++NCPGGS+ + + IYD +
Sbjct: 3 LLLRQRTVFLGHQLDDFVADAIISQLLLLDAMDSKKEIRMFINCPGGSVSAAMGIYDAIQ 62
Query: 160 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 219
+ +V T+ FG+AAS A++ILAGG KG R+AMPN RIM++QP G+ G DV+ Q E
Sbjct: 63 LCRAEVSTIAFGLAASTASVILAGGTKGKRFAMPNTRIMVHQPMGGASGQAIDVEIQAKE 122
Query: 220 AVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ ++ R+ A TG+P E+V++ +RDR++SA EAME+GLIDG+++ E
Sbjct: 123 IMFHKNNFTRILAEITGKPFEQVEKDIDRDRYMSAVEAMEYGLIDGVIDQE 173
>gi|403252433|ref|ZP_10918743.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga sp. EMP]
gi|402812446|gb|EJX26925.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga sp. EMP]
Length = 201
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 121/174 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 26 DIFSRLLKDRIVFLGSPIDDHVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 85
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 86 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEI 145
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + + ++R+ + TGQPIEK+++ T+RD F+SA EA E+G++D ++ T
Sbjct: 146 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVST 199
>gi|428771131|ref|YP_007162921.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
aponinum PCC 10605]
gi|428685410|gb|AFZ54877.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
aponinum PCC 10605]
Length = 239
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 119/176 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+G I+ +A ++QL+ L D + DI +Y+N PGGS+Y+ +AI
Sbjct: 47 FDIYSRLLRERIIFLGTAIDDKLADSIVAQLLYLEADDPEKDIYIYINSPGGSVYAGMAI 106
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M IKP V T+C+G+AAS A +L+GG KG R +PN+RIM++QP G+ G D++
Sbjct: 107 YDTMQQIKPDVSTICYGIAASMGAFLLSGGAKGKRLGLPNSRIMIHQPLGGAQGQASDIE 166
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++K++++ A TGQP+EK+ TERD ++S+ EA E+GLID ++ E
Sbjct: 167 IQAKEILYIKNKLNQLLADHTGQPLEKISLDTERDFYMSSTEAQEYGLIDEVIIRE 222
>gi|15643458|ref|NP_228504.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
MSB8]
gi|148269380|ref|YP_001243840.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
petrophila RKU-1]
gi|170288038|ref|YP_001738276.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga sp. RQ2]
gi|281411923|ref|YP_003346002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
naphthophila RKU-10]
gi|418045135|ref|ZP_12683231.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
MSB8]
gi|6685314|sp|Q9WZF9.1|CLPP_THEMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214719|sp|A5IJ91.1|CLPP_THEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706553|sp|B1L812.1|CLPP_THESQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|4981218|gb|AAD35777.1|AE001741_10 ATP-dependent Clp protease, proteolytic subunit [Thermotoga
maritima MSB8]
gi|147734924|gb|ABQ46264.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
petrophila RKU-1]
gi|170175541|gb|ACB08593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
sp. RQ2]
gi|281373026|gb|ADA66588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
naphthophila RKU-10]
gi|351678217|gb|EHA61364.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
MSB8]
Length = 203
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 121/174 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + + ++R+ + TGQPIEK+++ T+RD F+SA EA E+G++D ++ T
Sbjct: 148 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVST 201
>gi|383323811|ref|YP_005384665.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. GT-I]
gi|383326980|ref|YP_005387834.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. PCC-P]
gi|383492864|ref|YP_005410541.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. PCC-N]
gi|384438132|ref|YP_005652857.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|339275165|dbj|BAK51652.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|359273131|dbj|BAL30650.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. GT-I]
gi|359276301|dbj|BAL33819.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. PCC-N]
gi|359279471|dbj|BAL36988.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. PCC-P]
Length = 201
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 119/173 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 13 FDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 72
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 73 YDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIE 132
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++ M TGQP+EK+Q+ TERD F+SA EA E+GLID ++
Sbjct: 133 IQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVI 185
>gi|425445342|ref|ZP_18825374.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9443]
gi|425453823|ref|ZP_18833576.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9807]
gi|389734665|emb|CCI01691.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9443]
gi|389800128|emb|CCI20438.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9807]
Length = 233
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 124/196 (63%), Gaps = 4/196 (2%)
Query: 76 SGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 131
+G+N ++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L
Sbjct: 23 TGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAE 82
Query: 132 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 191
D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L GG G R +
Sbjct: 83 DPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPHVATICFGLAASMGAFLLCGGAAGKRMS 142
Query: 192 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251
+P++RIM++QP G+ G D+ Q E + + +++ M A TGQP +++ TERD F
Sbjct: 143 LPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFF 202
Query: 252 LSAAEAMEFGLIDGIL 267
+SA EA E+GLID ++
Sbjct: 203 MSAVEAKEYGLIDQVI 218
>gi|56421597|ref|YP_148915.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
kaustophilus HTA426]
gi|261420500|ref|YP_003254182.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
Y412MC61]
gi|319768169|ref|YP_004133670.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
sp. Y412MC52]
gi|375010197|ref|YP_004983830.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|448239320|ref|YP_007403378.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
GHH01]
gi|67460172|sp|Q5KVD9.1|CLPP_GEOKA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56381439|dbj|BAD77347.1| ATP-dependent Clp protease proteolytic subunit (class III
heat-shock protein) [Geobacillus kaustophilus HTA426]
gi|261376957|gb|ACX79700.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. Y412MC61]
gi|317113035|gb|ADU95527.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. Y412MC52]
gi|359289046|gb|AEV20730.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|445208162|gb|AGE23627.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
GHH01]
Length = 196
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA +SQL+ LA D D DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQPIE +++ T+RD F++A +AME+G+ID +L
Sbjct: 139 AAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAMEYGIIDRVL 190
>gi|425465976|ref|ZP_18845279.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9809]
gi|389831694|emb|CCI25350.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9809]
Length = 233
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 124/196 (63%), Gaps = 4/196 (2%)
Query: 76 SGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 131
+G+N ++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L
Sbjct: 23 TGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAE 82
Query: 132 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 191
D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L GG G R +
Sbjct: 83 DPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMS 142
Query: 192 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251
+P++RIM++QP G+ G D+ Q E + + +++ M A TGQP +++ TERD F
Sbjct: 143 LPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFF 202
Query: 252 LSAAEAMEFGLIDGIL 267
+SA EA E+GLID ++
Sbjct: 203 MSAVEAKEYGLIDQVI 218
>gi|430751620|ref|YP_007214528.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
gi|430735585|gb|AGA59530.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
Length = 195
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 120/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PIN +VA I+Q++ LA D + DI +Y+N PGGSI S +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTPINDVVANSVIAQMLFLAADDPEKDIHLYINSPGGSITSGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G G RYA+PN+ +M++QP G+ G D++
Sbjct: 81 DTMQYIKPDVSTICVGMAASMGAFLLAAGAPGKRYALPNSEVMIHQPLGGAEGQASDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R K++++ + TGQP+E++++ T+RD F+SA EA +GL+D ++E
Sbjct: 141 RARRILKMRDKLNKILSERTGQPLERIEKDTDRDYFMSAEEAKNYGLVDKVIE 193
>gi|367470105|ref|ZP_09469823.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
gi|365814809|gb|EHN09989.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
Length = 188
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L RIIF+G P++ +A ++QL+ LA+ DED DI +Y+N PGGS+Y+ LAI
Sbjct: 13 FDIYSRLLNERIIFLGTPVDDQIANLIVAQLLHLASDDEDKDISLYINSPGGSVYAGLAI 72
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP+V T+C G+A S A+ILAGG KG R ++PN++I+++Q SG G DV+
Sbjct: 73 YDTMQFIKPQVRTICVGIAMSMGAVILAGGAKGKRMSLPNSKILIHQVSSGFQGQATDVE 132
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + R K+D + A +GQP+EKV+ TERD F+ EA+ +G+ID +++
Sbjct: 133 IHAKEIIDLRGKLDEIIAHHSGQPLEKVKGDTERDYFMDPEEAVAYGIIDRVID 186
>gi|197123826|ref|YP_002135777.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Anaeromyxobacter sp. K]
gi|226706439|sp|B4UAX9.1|CLPP_ANASK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|196173675|gb|ACG74648.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter sp. K]
Length = 203
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q EA+ + K++ + A T QPIE++++ TERD F+SA EA E+GLID +
Sbjct: 141 QAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKEYGLIDDVF 192
>gi|445496993|ref|ZP_21463848.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
gi|444786988|gb|ELX08536.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
Length = 208
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 132/204 (64%), Gaps = 11/204 (5%)
Query: 75 ISGKNDNPPL-------MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAIS 123
++G N NP L +P V+ G D+ S L + R+IF+ P+N +A ++
Sbjct: 1 MTGMNRNPALDTEMLGLVPMVVEQSGRGERSYDIYSRLLKERVIFMVGPVNDQMANLIVA 60
Query: 124 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 183
QL+ L + + D DI +Y+N PGGS+ + LAI+D M +IKP V T+C G+AAS A +LA
Sbjct: 61 QLLFLESENPDKDISLYINSPGGSVSAGLAIFDTMQFIKPDVSTLCTGMAASMGAFLLAA 120
Query: 184 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243
G KG R+++PN+RIM++QP GS G D++ Q E + RH+++ + A TGQ +E++
Sbjct: 121 GAKGKRFSLPNSRIMIHQPSGGSQGMASDIEIQAKEILYLRHRLNSIMAERTGQSVEQIA 180
Query: 244 QYTERDRFLSAAEAMEFGLIDGIL 267
+ T+RDRF+SA EA+E+GLID +L
Sbjct: 181 KDTDRDRFMSAEEAVEYGLIDKML 204
>gi|310657900|ref|YP_003935621.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [[Clostridium] sticklandii]
gi|308824678|emb|CBH20716.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [[Clostridium] sticklandii]
Length = 194
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGDQVNDHTASLIVAQLLHLESEDPDKDIFLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D+K
Sbjct: 79 DTMQYIKPDVATICVGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGTQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ R+K++ + A +GQP+EK+++ TERD F+S+ EA E+GLID +LE
Sbjct: 139 HAERIIRMRNKLNEIMADRSGQPLEKIERDTERDFFMSSTEAKEYGLIDEVLE 191
>gi|86159772|ref|YP_466557.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Anaeromyxobacter dehalogenans 2CP-C]
gi|220918591|ref|YP_002493895.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter dehalogenans 2CP-1]
gi|115311353|sp|Q2IEW1.1|CLPP_ANADE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763782|sp|B8J5G7.1|CLPP_ANAD2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|85776283|gb|ABC83120.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Anaeromyxobacter dehalogenans 2CP-C]
gi|219956445|gb|ACL66829.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 203
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q EA+ + K++ + A T QPIE++++ TERD F+SA EA E+GLID +
Sbjct: 141 QAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKEYGLIDDVF 192
>gi|331001370|ref|ZP_08324994.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Parasutterella excrementihominis YIT 11859]
gi|329568629|gb|EGG50431.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Parasutterella excrementihominis YIT 11859]
Length = 209
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 126/193 (65%), Gaps = 4/193 (2%)
Query: 79 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 134
N N L+P V+ G D+ S L R+R++F+ P+ A ++QL+ L + + D
Sbjct: 6 NFNSALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLESENPD 65
Query: 135 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 194
DI +Y++ PGGS+Y+ L+IYD M +IKP V T+C G+AAS A +LA G KG R+A+PN
Sbjct: 66 KDISLYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKRFALPN 125
Query: 195 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+RIM++QP G+ G D++ Q E + R +++ + + TGQ IEK+ TERD F+S+
Sbjct: 126 SRIMIHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNFMSS 185
Query: 255 AEAMEFGLIDGIL 267
A+A+E+G+IDG+
Sbjct: 186 AQAVEYGIIDGVF 198
>gi|289548353|ref|YP_003473341.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermocrinis
albus DSM 14484]
gi|289181970|gb|ADC89214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermocrinis
albus DSM 14484]
Length = 199
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L D + DI M
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDPEKDIYM 67
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G AAS AA++LA G KG RY++P++RIM+
Sbjct: 68 YINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMAAVLLAAGAKGKRYSLPHSRIMI 127
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E +H ++ + A TGQP+ KV+Q ERD F+SA EAME
Sbjct: 128 HQPMGGISGQATDIIIHAEEIKRIKHMLNEIIAKHTGQPLSKVEQDVERDYFMSAYEAME 187
Query: 260 FGLIDGILE 268
+G++D ++E
Sbjct: 188 YGIVDKVIE 196
>gi|443660052|ref|ZP_21132510.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa DIANCHI905]
gi|159030460|emb|CAO91362.1| clpP2 [Microcystis aeruginosa PCC 7806]
gi|443332568|gb|ELS47168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa DIANCHI905]
Length = 233
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 124/196 (63%), Gaps = 4/196 (2%)
Query: 76 SGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 131
+G+N ++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L
Sbjct: 23 TGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAE 82
Query: 132 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 191
D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L GG G R +
Sbjct: 83 DPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMS 142
Query: 192 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251
+P++RIM++QP G+ G D+ Q E + + +++ M A TGQP +++ TERD F
Sbjct: 143 LPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFF 202
Query: 252 LSAAEAMEFGLIDGIL 267
+SA EA E+GLID ++
Sbjct: 203 MSAVEAKEYGLIDLVI 218
>gi|303257392|ref|ZP_07343405.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Burkholderiales bacterium 1_1_47]
gi|302859749|gb|EFL82827.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Burkholderiales bacterium 1_1_47]
Length = 209
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 126/193 (65%), Gaps = 4/193 (2%)
Query: 79 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 134
N N L+P V+ G D+ S L R+R++F+ P+ A ++QL+ L + + D
Sbjct: 6 NFNSALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLESENPD 65
Query: 135 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 194
DI +Y++ PGGS+Y+ L+IYD M +IKP V T+C G+AAS A +LA G KG R+A+PN
Sbjct: 66 KDISLYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKRFALPN 125
Query: 195 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+RIM++QP G+ G D++ Q E + R +++ + + TGQ IEK+ TERD F+S+
Sbjct: 126 SRIMIHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERDNFMSS 185
Query: 255 AEAMEFGLIDGIL 267
A+A+E+G+IDG+
Sbjct: 186 AQAVEYGIIDGVF 198
>gi|166369013|ref|YP_001661286.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
aeruginosa NIES-843]
gi|390442513|ref|ZP_10230504.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis sp. T1-4]
gi|422303000|ref|ZP_16390356.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9806]
gi|425435289|ref|ZP_18815746.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9432]
gi|425439908|ref|ZP_18820220.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9717]
gi|425452211|ref|ZP_18832029.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 7941]
gi|425458445|ref|ZP_18837933.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9808]
gi|425472440|ref|ZP_18851281.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9701]
gi|440754784|ref|ZP_20933986.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa TAIHU98]
gi|166091386|dbj|BAG06094.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
aeruginosa NIES-843]
gi|389680218|emb|CCH91098.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9432]
gi|389719747|emb|CCH96448.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9717]
gi|389766108|emb|CCI08183.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 7941]
gi|389792060|emb|CCI12154.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9806]
gi|389822691|emb|CCI29606.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9808]
gi|389834168|emb|CCI34630.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis sp. T1-4]
gi|389881467|emb|CCI37973.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9701]
gi|440174990|gb|ELP54359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa TAIHU98]
Length = 233
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 124/196 (63%), Gaps = 4/196 (2%)
Query: 76 SGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 131
+G+N ++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L
Sbjct: 23 TGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAE 82
Query: 132 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 191
D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L GG G R +
Sbjct: 83 DPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMS 142
Query: 192 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251
+P++RIM++QP G+ G D+ Q E + + +++ M A TGQP +++ TERD F
Sbjct: 143 LPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFF 202
Query: 252 LSAAEAMEFGLIDGIL 267
+SA EA E+GLID ++
Sbjct: 203 MSAVEAKEYGLIDLVI 218
>gi|222100864|ref|YP_002535432.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
neapolitana DSM 4359]
gi|221573254|gb|ACM24066.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
neapolitana DSM 4359]
Length = 200
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 120/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 26 DIFSRLLKDRIVFLGSPIDDHVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 85
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 86 DTMQYIKCDVSTICVGQAASMAAVLLAAGTKGKRYALPNARIMIHQPLGGAEGPAKDVEI 145
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++R+ + TGQPIEK+++ T+RD F+SA EA E+G++D ++
Sbjct: 146 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 197
>gi|337286231|ref|YP_004625704.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfatator indicus DSM 15286]
gi|335359059|gb|AEH44740.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfatator indicus DSM 15286]
Length = 202
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RI+FIG PI+ +A I+QL+ L D D DI +Y+N PGG + S LAIY
Sbjct: 18 DIYSRLLRERIVFIGAPIDDHLANLVIAQLLFLEAEDPDRDITLYINSPGGIVTSGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP + T+C G AAS AA++LAGG KG RYA+P++RIML+QP G DV
Sbjct: 78 DTMQYIKPDICTLCLGQAASMAAVLLAGGTKGKRYALPHSRIMLHQPIGSFQGQATDVDI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R ++ + A TGQPIE++Q+ TERD ++S+ EA ++G+ID IL
Sbjct: 138 QAREILRLRAMLNEILANHTGQPIEQIQKDTERDFYMSSEEAQKYGVIDKIL 189
>gi|239618479|ref|YP_002941801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
olearia TBF 19.5.1]
gi|239507310|gb|ACR80797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
olearia TBF 19.5.1]
Length = 206
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 130/190 (68%), Gaps = 4/190 (2%)
Query: 83 PLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P++P V+ G D+ + L RIIF+G P++ ++ ++QL+ L + D D DI
Sbjct: 7 PVVPYVVENKGRGERIYDIFTKLLSERIIFLGWPLDDEISNIVVAQLLFLESQDPDKDIS 66
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGS+ S LAIYD M +IKP V T+C G+AAS AA+ILAGG KG R+A+P++RIM
Sbjct: 67 IYINSPGGSVTSGLAIYDTMQYIKPDVSTICIGMAASMAAVILAGGSKGKRFALPHSRIM 126
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G +D++ + E + R +I+ + + T QP EK+++ T+RD ++S AEA+
Sbjct: 127 IHQPWGGAEGTAKDIEIRTRELLFIRDQINEILSHHTNQPKEKIEEDTDRDFYMSPAEAV 186
Query: 259 EFGLIDGILE 268
++GL+D ++E
Sbjct: 187 KYGLVDKVIE 196
>gi|255657287|ref|ZP_05402696.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-23m63]
gi|296451860|ref|ZP_06893579.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP08]
gi|296879744|ref|ZP_06903718.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP07]
gi|296259339|gb|EFH06215.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP08]
gi|296429215|gb|EFH15088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP07]
Length = 194
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 122/172 (70%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG+ IN +A ++QL+ L + D D+DI++Y+N PGGS+ + AIY
Sbjct: 19 DIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDIIIYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++++ V T+C G+AAS +A +LAGG G RYA+PNA IM++QP G+ G DVK
Sbjct: 79 DTMNYVRCDVSTICIGMAASMSAFLLAGGTHGKRYALPNAEIMIHQPMGGAKGQATDVKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
V+ + + ++DR+++ TG+ IE +++ T+RD F++A EA E+GLID I+
Sbjct: 139 AVDNILKIKERLDRIFSENTGKSIEDIRRDTDRDNFMTALEAKEYGLIDYIM 190
>gi|217967475|ref|YP_002352981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
turgidum DSM 6724]
gi|217336574|gb|ACK42367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
turgidum DSM 6724]
Length = 194
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 130/191 (68%), Gaps = 4/191 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RI+F+G IN VA ++QL+ L + D + DI +
Sbjct: 2 LVPIVIEQTPRGERAYDIYSRLLKSRIVFLGTTINDEVANLIVAQLLFLESEDPEKDIYL 61
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + LAIYD + IKPKV TVC G AAS AAI+LA G+KG RYA+P++R+M+
Sbjct: 62 YINSPGGEVSAGLAIYDTIRHIKPKVATVCVGQAASMAAILLAAGDKGKRYALPHSRVMI 121
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ E + + ++ + A TGQPIEK+++ T+RD F+SA EA E
Sbjct: 122 HQPLGGAYGPAADIEIHTREILKIKRVLNEILAYHTGQPIEKIEKDTDRDFFMSAYEAKE 181
Query: 260 FGLIDGILETE 270
+G++D +LE++
Sbjct: 182 YGIVDEVLESK 192
>gi|339320059|ref|YP_004679754.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Midichloria mitochondrii IricVA]
gi|338226184|gb|AEI89068.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Midichloria mitochondrii IricVA]
Length = 216
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 119/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R+ I+F+ PI +A ++QL+ L + + D DI MY+N PGG + + ++I
Sbjct: 18 FDIYSRLLRDGIVFVNGPIEDNMAAIIVAQLLFLESENPDKDIYMYINSPGGVVTAGMSI 77
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++KP+V TVC G A S +++LAGGE GMRY++PN+RIM++QP G G D++
Sbjct: 78 YDTMQYVKPRVATVCMGQACSMGSMLLAGGEPGMRYSLPNSRIMIHQPHGGYRGQATDIE 137
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
NE + +H ++ +Y TGQP++++++ ERD F+SA+EA +FGLID I+E
Sbjct: 138 IHANEILRIKHNMNLLYVKHTGQPLKEIEKRIERDSFMSASEAKKFGLIDDIIE 191
>gi|378824294|ref|ZP_09846807.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Sutterella parvirubra YIT 11816]
gi|378596865|gb|EHY30240.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Sutterella parvirubra YIT 11816]
Length = 194
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 128/188 (68%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R+RI+F+ +N A ++QL+ L + D D DI +
Sbjct: 3 LVPIVVESSGRGERSFDIYSRLLRDRIVFLNTDVNDQSASLIVAQLLFLESEDPDKDISL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AI+D M +I+PKV T+C G+AAS A +LA GEKG RYA+P++RIM+
Sbjct: 63 YINSPGGSVSAGMAIFDTMRFIRPKVNTICMGMAASMGAFLLAAGEKGKRYALPHSRIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G DV+ + + ++ + +++ + A FTG+ +E++Q+ T+RD F+SA EA++
Sbjct: 123 HQPLGGAEGQASDVEIRARQLLLIKRQMNELMAEFTGRTVEELQRDTDRDNFMSAEEALK 182
Query: 260 FGLIDGIL 267
+GLID IL
Sbjct: 183 YGLIDEIL 190
>gi|332283982|ref|YP_004415893.1| ATP-dependent Clp protease proteolytic subunit [Pusillimonas sp.
T7-7]
gi|330427935|gb|AEC19269.1| ATP-dependent Clp protease proteolytic subunit [Pusillimonas sp.
T7-7]
Length = 218
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERVIFFVGPVNDHTANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG RY +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGIAASMGAFLLAAGAKGKRYTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ + A TGQP+E++ + TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAREILSLRERLNTILAKNTGQPVERIAEDTERDNFMSAEDAVSYGLVDKVL 211
>gi|373457870|ref|ZP_09549637.1| ATP-dependent Clp protease proteolytic subunit [Caldithrix abyssi
DSM 13497]
gi|371719534|gb|EHO41305.1| ATP-dependent Clp protease proteolytic subunit [Caldithrix abyssi
DSM 13497]
Length = 206
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ G D+ S L + RI+F+G PI+ VA ISQL+ L D DI
Sbjct: 2 PLVPIVIEQTGRSERAYDIYSRLLKERIVFLGTPIDDNVASLIISQLLFLEAEDPTKDIY 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGG + S LAIYD M +IKP V T C G AAS A++LA G KG RYA+P+ARIM
Sbjct: 62 LYINSPGGIVSSGLAIYDTMRYIKPDVVTTCMGQAASMGAVLLAAGAKGKRYALPHARIM 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D+ NE + + ++++ A TG+P+EK++Q T+R+ F+SA EA+
Sbjct: 122 IHQPLGGAEGQASDIAIAANEILRIKKVLNQILADATGKPLEKIEQDTDRNFFMSAEEAL 181
Query: 259 EFGLIDGIL 267
E+GLID +L
Sbjct: 182 EYGLIDKVL 190
>gi|297583414|ref|YP_003699194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
selenitireducens MLS10]
gi|297141871|gb|ADH98628.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
selenitireducens MLS10]
Length = 197
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 119/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA ++QL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTPIDDNVANSIVAQLLFLAADDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +L GE G RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPKVQTICIGMAASMGAFLLTAGEPGKRYALPNSEVMIHQPLGGAQGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
V + K++++ A TGQ IE++++ T+RD FLSAA+A E+GLID +++
Sbjct: 139 HAKRIVEMKEKLNQILAERTGQDIEQIRKDTDRDNFLSAAQAKEYGLIDEVMD 191
>gi|428222892|ref|YP_007107062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7502]
gi|427996232|gb|AFY74927.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7502]
Length = 214
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 127/208 (61%), Gaps = 8/208 (3%)
Query: 67 STEHSYKIISGKNDNPPLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAI 122
S HSY G N ++P V+ G D+ S L R RIIF+G +N VA +
Sbjct: 9 SQYHSY----GNIQNSEIVPMVVEQSGKGERAFDIFSRLLRERIIFLGTEVNDSVASVMM 64
Query: 123 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 182
SQL+ L D DI +Y+N PGGS+ S +AIYD M ++P V T+C G+AAS A +L+
Sbjct: 65 SQLLFLEAEDPQKDIYVYINSPGGSVTSGMAIYDTMQHVRPDVSTICMGLAASMGAFLLS 124
Query: 183 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV 242
G KG R ++PN+RIM++QP G+ G D++ Q E + + ++++ A TGQP++K+
Sbjct: 125 AGAKGKRLSLPNSRIMIHQPLGGARGQAVDIEIQAKEILYHKRTLNKLLAEHTGQPLDKI 184
Query: 243 QQYTERDRFLSAAEAMEFGLIDGILETE 270
+Q TERD F+S AEA +GLID +L +
Sbjct: 185 EQDTERDFFMSPAEAKNYGLIDQVLTKQ 212
>gi|357013904|ref|ZP_09078903.1| ClpP1 [Paenibacillus elgii B69]
Length = 193
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
+P V+ P D+ S L ++RIIF+G PIN +VA I+Q++ LA D D DI +
Sbjct: 3 FIPMVVEPDARGERAYDIYSRLLKDRIIFLGSPINDVVANSIIAQMLFLAATDPDKDISV 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI S +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M+
Sbjct: 63 YINSPGGSITSGMAIYDTMQFIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + + R K++ + A TGQ E++++ T+RD F+SA +A
Sbjct: 123 HQPLGGAEGQASDIEIRAKRILKMRDKLNTILAERTGQSFERIEKDTDRDNFMSAEDAKN 182
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 183 YGLIDKVIE 191
>gi|123969397|ref|YP_001010255.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
AS9601]
gi|126697184|ref|YP_001092070.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9301]
gi|123199507|gb|ABM71148.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
AS9601]
gi|126544227|gb|ABO18469.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9301]
Length = 214
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 123/194 (63%), Gaps = 4/194 (2%)
Query: 79 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 134
N +P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D +
Sbjct: 20 NKTIAAVPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPE 79
Query: 135 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 194
DI +Y+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN
Sbjct: 80 KDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPN 139
Query: 195 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+RIM++QP G+ G +++ Q E + + ++ + A TGQP+EK+ + TERD FLS
Sbjct: 140 SRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSP 199
Query: 255 AEAMEFGLIDGILE 268
+EA+E+GLID +++
Sbjct: 200 SEAVEYGLIDKVIK 213
>gi|428201398|ref|YP_007079987.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pleurocapsa
sp. PCC 7327]
gi|427978830|gb|AFY76430.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pleurocapsa
sp. PCC 7327]
Length = 272
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 124/193 (64%), Gaps = 4/193 (2%)
Query: 79 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 134
ND ++P V+ G D+ S L R RI+F+G PI+ VA ++QL+ L D +
Sbjct: 64 NDIENVIPMVVEQSGLGERAFDIYSRLLRERIVFLGTPIDDKVADSIVAQLLYLDAEDPE 123
Query: 135 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 194
DI +Y+N PGGS+Y+ AIYD M ++P V T+CFG+AAS A +L+GG KG R A+P+
Sbjct: 124 KDIQLYINSPGGSVYAGFAIYDAMQQVRPDVVTICFGLAASMGAFLLSGGAKGKRMALPS 183
Query: 195 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
AR+M++QP G+ G +++ Q E + + +++ + A TGQP EK+ TERD ++SA
Sbjct: 184 ARLMIHQPIGGAQGQAVEIEIQAREILYMKQRLNELLAIHTGQPYEKIATDTERDFYMSA 243
Query: 255 AEAMEFGLIDGIL 267
EA E+GLID ++
Sbjct: 244 QEAQEYGLIDRVI 256
>gi|332708809|ref|ZP_08428780.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
gi|332352351|gb|EGJ31920.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
Length = 230
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 131/206 (63%), Gaps = 8/206 (3%)
Query: 66 CSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRA 121
S+ Y+I S ++P V+ G D+ S L R RI+F+G ++ +VA
Sbjct: 14 LSSLDQYQITSSST----VVPMVVEQSGMGERAFDIYSRLLRERIVFLGTQVDDVVADSI 69
Query: 122 ISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIIL 181
++QL+ L DE+ DI +Y+N PGGS+ + +AIYD M ++P V T+C+G+AAS A +L
Sbjct: 70 VAQLLYLEAEDEEKDIQLYINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMGAFLL 129
Query: 182 AGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEK 241
AGG G R A+PN+RIM++QP G+ G D++ Q E + + ++++ A TGQP+E+
Sbjct: 130 AGGAAGKRMALPNSRIMIHQPLGGAQGQAVDIEIQAREILYHKQTLNQLLANHTGQPVEQ 189
Query: 242 VQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + TERD F+SAAEA ++GLID ++
Sbjct: 190 IAEDTERDFFMSAAEAKDYGLIDQVI 215
>gi|297531315|ref|YP_003672590.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
sp. C56-T3]
gi|297254567|gb|ADI28013.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. C56-T3]
Length = 196
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQPIE +++ T+RD F++A +AME+G+ID +L
Sbjct: 139 AAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAMEYGIIDRVL 190
>gi|78780133|ref|YP_398245.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9312]
gi|115311352|sp|Q317Y6.1|CLPP4_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
AltName: Full=Endopeptidase Clp 4
gi|78713632|gb|ABB50809.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9312]
Length = 219
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D + DI +Y
Sbjct: 31 VPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIY 90
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 91 INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 150
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G +++ Q E + + ++ + A TGQP+EK+ + TERD FLS +EA+E+
Sbjct: 151 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEY 210
Query: 261 GLIDGILE 268
GLID +++
Sbjct: 211 GLIDKVIK 218
>gi|443320140|ref|ZP_21049261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gloeocapsa
sp. PCC 73106]
gi|442790136|gb|ELR99748.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gloeocapsa
sp. PCC 73106]
Length = 233
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 131/210 (62%), Gaps = 8/210 (3%)
Query: 67 STEHSYK--IISGKNDN--PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVA 118
ST+ YK I S KND ++P V+ G D+ S L R RIIFIG PI+ +A
Sbjct: 10 STQSHYKPEIQSVKNDPTIKNIVPMVLEQSGLGERAFDIYSRLLRERIIFIGTPIDDTLA 69
Query: 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 178
+QL+ L D + DI +Y+N PGGS+Y+ +AIYD M + P V T+C+G+AAS A
Sbjct: 70 NSVTAQLLFLEAEDSEKDIQIYINSPGGSVYAGMAIYDTMRQVAPDVATICYGIAASMGA 129
Query: 179 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQP 238
+L+GG G R A+PNAR+M++QP G+ G D++ Q E + + +++++ A TGQ
Sbjct: 130 FLLSGGTNGKRMALPNARMMIHQPLGGAQGQASDIQIQAREILYIKKRLNQLLAEHTGQT 189
Query: 239 IEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+EKV TERD ++S+ +A E+GLID ++
Sbjct: 190 LEKVSMDTERDFYMSSEKAKEYGLIDQVIH 219
>gi|255994401|ref|ZP_05427536.1| Clp protease [Eubacterium saphenum ATCC 49989]
gi|255993114|gb|EEU03203.1| Clp protease [Eubacterium saphenum ATCC 49989]
Length = 196
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 126/190 (66%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L P V+ G D+ S L R+RIIFIG+PI S +A I+QL+ L D DI +
Sbjct: 3 LTPIVIEKDGSGERSFDIYSRLLRDRIIFIGEPIESNMASSIIAQLLFLEAEDSSKDICI 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + S LAIYD M +IKP+V TVC G+AAS AA++L GEKG R+A+PN+ IM+
Sbjct: 63 YINSPGGDVTSGLAIYDTMQFIKPQVQTVCVGMAASMAAVLLLAGEKGKRFALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G ++K + +R K++R+ + T + + +++ T+RD++++A EA++
Sbjct: 123 HQPMGGASGQASEIKIAAEHIIKTRDKLNRLISKHTTKNLSTIEEDTDRDKYMTANEALD 182
Query: 260 FGLIDGILET 269
+G+ID +L++
Sbjct: 183 YGIIDSVLKS 192
>gi|434399019|ref|YP_007133023.1| ATP-dependent Clp protease proteolytic subunit [Stanieria
cyanosphaera PCC 7437]
gi|428270116|gb|AFZ36057.1| ATP-dependent Clp protease proteolytic subunit [Stanieria
cyanosphaera PCC 7437]
Length = 227
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G PI+ VA ++QL+ L D + DI +
Sbjct: 25 VVPMVIEQSGIGERAFDIYSRLLRERIVFLGTPIDDKVADSIVAQLLYLEAEDPEKDIQL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+YS +AIYD M I+P + T+C+G+AAS A +L+GG KG R A+P++RIM+
Sbjct: 85 YINSPGGSVYSGMAIYDTMQQIQPDIVTICYGIAASMGAFLLSGGTKGKRMALPSSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A TGQP EKV TERD ++SA EA E
Sbjct: 145 HQPLGGAQGQAVDIEIQAREILYIKKRLNDLIAEHTGQPFEKVAADTERDFYMSAQEAQE 204
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 205 YGLIDQVI 212
>gi|237755491|ref|ZP_04584113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237692355|gb|EEP61341.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 201
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RII +G PI+ +A ++QL+ L + D D DI M
Sbjct: 8 LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDPDKDIYM 67
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + LAIYD M++IKP V T+C G AAS A +L+ G KG RY++PNARIM+
Sbjct: 68 YINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + + ++ A TGQPIEK++ TERD F+SA EA E
Sbjct: 128 HQPLGGFQGQATDIEIHAKEILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKE 187
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 188 YGLIDKVI 195
>gi|153006264|ref|YP_001380589.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter sp. Fw109-5]
gi|166201797|sp|A7HFV9.1|CLPP_ANADF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|152029837|gb|ABS27605.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter sp. Fw109-5]
Length = 204
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++QP G G D+
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQATDIDI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + K++ + A T QP+E++++ T+RD F+ A EA E+GLID ++
Sbjct: 141 QAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFMGAGEAKEYGLIDEVI 192
>gi|295696500|ref|YP_003589738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kyrpidia
tusciae DSM 2912]
gi|295412102|gb|ADG06594.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kyrpidia
tusciae DSM 2912]
Length = 192
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+QL+ LA D + D+ +Y+N PGGS+ + +AI
Sbjct: 19 DIYSRLLKDRIIFLGTPIDDQVANSVIAQLLFLAAEDPEKDVSLYINSPGGSVTAGMAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G+AAS AA++LA G KG R A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIRPDVATICVGMAASMAAVLLAAGAKGKRRALPNSEIMIHQPLGGVQGQAVDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + R K++R+ + TGQP+ ++++ T+RDRF+SA EA E+GLID ++
Sbjct: 139 HADRILRVREKLNRILSERTGQPLSRIEEDTDRDRFMSADEAKEYGLIDDVI 190
>gi|367470526|ref|ZP_09470222.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
gi|365814380|gb|EHN09582.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
Length = 205
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 128/193 (66%), Gaps = 5/193 (2%)
Query: 83 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ T G D+ S L RIIF+GQ I+ +A I+QL+ LA+ DED DI
Sbjct: 2 PLVPVVVERTARGEREYDIFSRLLNERIIFLGQGIDDQIANLVIAQLLHLASDDEDKDIS 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGS+ + LAI D M+++KP V T+C G+A S +++LAGG KG R+++PN+RI+
Sbjct: 62 IYINSPGGSVTAGLAILDTMNFVKPDVRTICVGIAMSAGSLLLAGGAKGKRFSLPNSRIL 121
Query: 199 LNQPQ-SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP SG G D++ E + +R K++++Y TGQP+E +++ ERDRF S +A
Sbjct: 122 THQPSVSGFEGQATDIEIHARELIKTRAKLNQIYVELTGQPLEVIERDMERDRFFSPEQA 181
Query: 258 MEFGLIDGILETE 270
E+GLID +L E
Sbjct: 182 KEYGLIDQVLGAE 194
>gi|254525962|ref|ZP_05138014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9202]
gi|221537386|gb|EEE39839.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9202]
Length = 214
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 123/194 (63%), Gaps = 4/194 (2%)
Query: 79 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 134
N +P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D +
Sbjct: 20 NKTVTAVPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPE 79
Query: 135 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 194
DI +Y+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN
Sbjct: 80 KDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPN 139
Query: 195 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+RIM++QP G+ G +++ Q E + + ++ + A TGQP+EK+ + TERD FLS
Sbjct: 140 SRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSP 199
Query: 255 AEAMEFGLIDGILE 268
+EA+E+GLID +++
Sbjct: 200 SEAVEYGLIDKVIK 213
>gi|418632534|ref|ZP_13194964.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU128]
gi|374832104|gb|EHR95824.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU128]
Length = 194
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 118/175 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIHHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ + TGQ IEK+QQ T+RD FL+AAEA E+GLID ++E E
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEVMEPE 193
>gi|188996270|ref|YP_001930521.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931337|gb|ACD65967.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 201
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RII +G PI+ +A ++QL+ L + D D DI M
Sbjct: 8 LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDPDKDIYM 67
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + LAIYD M++IKP V T+C G AAS A +L+ G KG RY++PNARIM+
Sbjct: 68 YINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + + ++ A TGQPIEK++ TERD F+SA EA E
Sbjct: 128 HQPLGGFQGQATDIEIHAREILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKE 187
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 188 YGLIDKVI 195
>gi|157414262|ref|YP_001485128.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9215]
gi|157388837|gb|ABV51542.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9215]
Length = 214
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 123/194 (63%), Gaps = 4/194 (2%)
Query: 79 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 134
N +P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D +
Sbjct: 20 NKTVAAVPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPE 79
Query: 135 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 194
DI +Y+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN
Sbjct: 80 KDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPN 139
Query: 195 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+RIM++QP G+ G +++ Q E + + ++ + A TGQP+EK+ + TERD FLS
Sbjct: 140 SRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSP 199
Query: 255 AEAMEFGLIDGILE 268
+EA+E+GLID +++
Sbjct: 200 SEAVEYGLIDKVIK 213
>gi|121534156|ref|ZP_01665981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
carboxydivorans Nor1]
gi|121307259|gb|EAX48176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
carboxydivorans Nor1]
Length = 203
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+FIG PI+ VA I+QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIVFIGGPIDDHVANLVIAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS AA++LA G G RYA+P AR+M++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICLGSAASMAAVLLAAGAPGKRYALPYARVMIHQPLGGAQGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R ++ + A TG+P+E++Q TERD F+S+ EA E+G+ID ++
Sbjct: 139 QAREILRLREILNDILARHTGKPLERIQHDTERDYFMSSEEAKEYGIIDAVV 190
>gi|27467469|ref|NP_764106.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis ATCC 12228]
gi|57866412|ref|YP_188029.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis RP62A]
gi|242242138|ref|ZP_04796583.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis W23144]
gi|251810202|ref|ZP_04824675.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis BCM-HMP0060]
gi|282875651|ref|ZP_06284522.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis SK135]
gi|293368230|ref|ZP_06614859.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis M23864:W2(grey)]
gi|416124873|ref|ZP_11595668.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis FRI909]
gi|417647658|ref|ZP_12297492.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU144]
gi|417656247|ref|ZP_12305934.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU028]
gi|417658376|ref|ZP_12308010.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU045]
gi|417910192|ref|ZP_12553919.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU037]
gi|417911815|ref|ZP_12555515.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU105]
gi|417914206|ref|ZP_12557859.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU109]
gi|418326030|ref|ZP_12937226.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU071]
gi|418329732|ref|ZP_12940785.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis 14.1.R1.SE]
gi|418411293|ref|ZP_12984561.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis BVS058A4]
gi|418604876|ref|ZP_13168211.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU041]
gi|418608483|ref|ZP_13171678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU057]
gi|418608689|ref|ZP_13171871.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU065]
gi|418611518|ref|ZP_13174598.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU117]
gi|418614099|ref|ZP_13177086.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU118]
gi|418618003|ref|ZP_13180887.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU120]
gi|418622588|ref|ZP_13185333.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU123]
gi|418623648|ref|ZP_13186350.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU125]
gi|418626020|ref|ZP_13188648.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU126]
gi|418629665|ref|ZP_13192161.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU127]
gi|418633713|ref|ZP_13196119.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU129]
gi|418665858|ref|ZP_13227295.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU081]
gi|419768236|ref|ZP_14294368.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-250]
gi|419771145|ref|ZP_14297205.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-K]
gi|420162870|ref|ZP_14669625.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM095]
gi|420166724|ref|ZP_14673405.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM088]
gi|420167312|ref|ZP_14673973.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM087]
gi|420171404|ref|ZP_14677946.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM070]
gi|420172098|ref|ZP_14678613.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM067]
gi|420175404|ref|ZP_14681842.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM061]
gi|420176672|ref|ZP_14683079.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM057]
gi|420180409|ref|ZP_14686641.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM053]
gi|420182492|ref|ZP_14688628.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM049]
gi|420185937|ref|ZP_14692013.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM040]
gi|420187913|ref|ZP_14693928.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM039]
gi|420189984|ref|ZP_14695932.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM037]
gi|420193132|ref|ZP_14698987.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM023]
gi|420195431|ref|ZP_14701223.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM021]
gi|420197784|ref|ZP_14703505.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM020]
gi|420199727|ref|ZP_14705398.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM031]
gi|420201234|ref|ZP_14706859.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM018]
gi|420203772|ref|ZP_14709333.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM015]
gi|420206801|ref|ZP_14712306.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM008]
gi|420208208|ref|ZP_14713678.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM003]
gi|420212385|ref|ZP_14717736.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM001]
gi|420213579|ref|ZP_14718885.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH05005]
gi|420216619|ref|ZP_14721823.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH05001]
gi|420219555|ref|ZP_14724570.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH04008]
gi|420222322|ref|ZP_14727243.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH08001]
gi|420225248|ref|ZP_14730082.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH06004]
gi|420226678|ref|ZP_14731457.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH05003]
gi|420228998|ref|ZP_14733709.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH04003]
gi|420231355|ref|ZP_14736007.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH051668]
gi|420233994|ref|ZP_14738568.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH051475]
gi|421607631|ref|ZP_16048869.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis AU12-03]
gi|38257586|sp|Q8CTE0.1|CLPP_STAES RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460168|sp|Q5HQW0.1|CLPP_STAEQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|27315012|gb|AAO04148.1|AE016745_247 ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis ATCC 12228]
gi|57637070|gb|AAW53858.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis RP62A]
gi|242234451|gb|EES36763.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis W23144]
gi|251806254|gb|EES58911.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295678|gb|EFA88201.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis SK135]
gi|291317653|gb|EFE58070.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis M23864:W2(grey)]
gi|319401155|gb|EFV89370.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis FRI909]
gi|329723271|gb|EGG59801.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU144]
gi|329736698|gb|EGG72963.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU028]
gi|329738003|gb|EGG74227.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU045]
gi|341651029|gb|EGS74836.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU037]
gi|341652326|gb|EGS76115.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU105]
gi|341653290|gb|EGS77061.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU109]
gi|365226941|gb|EHM68152.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU071]
gi|365229855|gb|EHM70983.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis 14.1.R1.SE]
gi|374401382|gb|EHQ72456.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU057]
gi|374403769|gb|EHQ74765.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU041]
gi|374407975|gb|EHQ78819.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU081]
gi|374409868|gb|EHQ80637.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU065]
gi|374817066|gb|EHR81256.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU120]
gi|374821672|gb|EHR85724.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU118]
gi|374822416|gb|EHR86438.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU117]
gi|374826344|gb|EHR90243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU123]
gi|374829958|gb|EHR93749.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU125]
gi|374833196|gb|EHR96891.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU127]
gi|374834043|gb|EHR97705.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU126]
gi|374838660|gb|EHS02198.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU129]
gi|383360447|gb|EID37843.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-250]
gi|383362116|gb|EID39473.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-K]
gi|394233097|gb|EJD78707.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM088]
gi|394235867|gb|EJD81417.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM095]
gi|394238050|gb|EJD83534.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM070]
gi|394238941|gb|EJD84398.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM087]
gi|394243339|gb|EJD88705.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM061]
gi|394243569|gb|EJD88931.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM067]
gi|394250037|gb|EJD95239.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM049]
gi|394250752|gb|EJD95922.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM053]
gi|394252238|gb|EJD97276.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM057]
gi|394253029|gb|EJD98045.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM040]
gi|394255555|gb|EJE00504.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM039]
gi|394259277|gb|EJE04135.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM037]
gi|394260255|gb|EJE05070.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM023]
gi|394263226|gb|EJE07965.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM021]
gi|394265370|gb|EJE10027.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM020]
gi|394271477|gb|EJE15970.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM031]
gi|394273140|gb|EJE17575.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM018]
gi|394274354|gb|EJE18775.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM015]
gi|394276904|gb|EJE21237.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM008]
gi|394279819|gb|EJE24116.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM001]
gi|394282082|gb|EJE26294.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIHLM003]
gi|394285155|gb|EJE29239.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH05005]
gi|394288813|gb|EJE32713.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH04008]
gi|394289374|gb|EJE33258.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH08001]
gi|394291646|gb|EJE35441.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH05001]
gi|394293803|gb|EJE37505.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH06004]
gi|394298294|gb|EJE41871.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH05003]
gi|394299681|gb|EJE43216.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH04003]
gi|394302921|gb|EJE46355.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH051668]
gi|394304687|gb|EJE48083.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis NIH051475]
gi|406656682|gb|EKC83083.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis AU12-03]
gi|410892837|gb|EKS40628.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis BVS058A4]
Length = 194
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 118/175 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ + TGQ IEK+QQ T+RD FL+AAEA E+GLID ++E E
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEVMEPE 193
>gi|311069969|ref|YP_003974892.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
1942]
gi|398308397|ref|ZP_10511871.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mojavensis
RO-H-1]
gi|419821657|ref|ZP_14345250.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
C89]
gi|310870486|gb|ADP33961.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
1942]
gi|388474293|gb|EIM11023.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
C89]
Length = 198
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EAME+GLID +L
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEAMEYGLIDKVL 190
>gi|172039352|ref|YP_001805853.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
51142]
gi|354552381|ref|ZP_08971689.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. ATCC 51472]
gi|171700806|gb|ACB53787.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
ATCC 51142]
gi|353555703|gb|EHC25091.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. ATCC 51472]
Length = 229
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 118/173 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 41 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 100
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 101 YDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMALPSSRIMIHQPLGGAQGQAVEIE 160
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++ M A TGQP+E + TERD F+SA EA+++GLID ++
Sbjct: 161 IQAKEILYIKKRLNDMLAEHTGQPLETIAADTERDFFMSAQEAVDYGLIDQVI 213
>gi|21674371|ref|NP_662436.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
tepidum TLS]
gi|25008303|sp|Q8KC73.1|CLPP_CHLTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|21647550|gb|AAM72778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
tepidum TLS]
Length = 225
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 130/212 (61%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG +N L+P V+ G D+ S L R RIIF+G PI+
Sbjct: 5 NFGFDHHAKKLYSGAIENSINSQLVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA I+QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS
Sbjct: 65 VAGLIIAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G G R ++P++RIM++QP G+ G D+ Q E RH ++ + A TG
Sbjct: 125 GAFLLASGTSGKRASLPHSRIMIHQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q + ++++ +ERDR++SA EA E+GLID I E
Sbjct: 185 QEVSRIREDSERDRWMSAVEAKEYGLIDQIFE 216
>gi|428307443|ref|YP_007144268.1| ATP-dependent Clp protease proteolytic subunit [Crinalium
epipsammum PCC 9333]
gi|428248978|gb|AFZ14758.1| ATP-dependent Clp protease proteolytic subunit [Crinalium
epipsammum PCC 9333]
Length = 228
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 119/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+G P++ VA ++QL+ L + D + DI +Y+N PGGS+ + +AI
Sbjct: 40 FDIYSRLLRERIIFMGTPVDDTVADSLVAQLLFLESEDPEKDIQLYINSPGGSVTAGMAI 99
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G D++
Sbjct: 100 YDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMALPSSRIMIHQPLGGAQGQAVDIE 159
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + ++ + A TGQPI+K+ TERD F+S+AEA ++GLID +++
Sbjct: 160 IQAKEILYHKRVLNELLAEHTGQPIDKITADTERDFFMSSAEAKDYGLIDQVID 213
>gi|385810287|ref|YP_005846683.1| ATP-dependent Clp protease catalytic subunit [Ignavibacterium album
JCM 16511]
gi|383802335|gb|AFH49415.1| ATP-dependent Clp protease catalytic subunit [Ignavibacterium album
JCM 16511]
Length = 206
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 126/190 (66%), Gaps = 5/190 (2%)
Query: 84 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G +D+ S L R RI+FIG PI+ +A I+QL+ L D + DI +
Sbjct: 11 LVPYVIEQTGRGERGMDIYSRLLRERIVFIGTPIDDHIASLTIAQLIFLEAEDPEKDIHI 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS AA++LAGG KG R+A+P+++I++
Sbjct: 71 YINSPGGSVTAGLAIYDTMRFIKPDVSTICVGMAASMAAVLLAGGTKGKRFALPHSKILI 130
Query: 200 NQPQS-GSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
+QP + G GG V DV+ E + +R + + A TG+P E++ + ERD FL+A EA
Sbjct: 131 HQPWTQGIGGQVTDVEIHAKEMLKTRETLYNILAEHTGKPYEQIAKDCERDYFLTAQEAK 190
Query: 259 EFGLIDGILE 268
E+ LID I+E
Sbjct: 191 EYNLIDDIIE 200
>gi|16080507|ref|NP_391334.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. 168]
gi|221311403|ref|ZP_03593250.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. 168]
gi|221315730|ref|ZP_03597535.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221320645|ref|ZP_03601939.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221324930|ref|ZP_03606224.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. SMY]
gi|321313004|ref|YP_004205291.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
BSn5]
gi|384177077|ref|YP_005558462.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
subtilis subsp. subtilis str. RO-NN-1]
gi|402777617|ref|YP_006631561.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
QB928]
gi|418031330|ref|ZP_12669815.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|428281042|ref|YP_005562777.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. natto BEST195]
gi|430758166|ref|YP_007208041.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|449095907|ref|YP_007428398.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
XF-1]
gi|452912837|ref|ZP_21961465.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Bacillus
subtilis MB73/2]
gi|3287962|sp|P80244.3|CLPP_BACSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Caseinolytic protease; AltName:
Full=Endopeptidase Clp; AltName: Full=Stress protein G7
gi|364506085|pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506086|pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506087|pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506088|pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506089|pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506090|pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506091|pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|1945673|emb|CAB08043.1| hypothetical protein [Bacillus subtilis]
gi|2635967|emb|CAB15459.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. 168]
gi|2668494|gb|AAC46381.1| ClpP [Bacillus subtilis]
gi|291485999|dbj|BAI87074.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. natto BEST195]
gi|320019278|gb|ADV94264.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
BSn5]
gi|349596301|gb|AEP92488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
subtilis subsp. subtilis str. RO-NN-1]
gi|351472389|gb|EHA32502.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|402482796|gb|AFQ59305.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
QB928]
gi|407962289|dbj|BAM55529.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
BEST7613]
gi|407966303|dbj|BAM59542.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
BEST7003]
gi|430022686|gb|AGA23292.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|449029822|gb|AGE65061.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
XF-1]
gi|452117865|gb|EME08259.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Bacillus
subtilis MB73/2]
Length = 197
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID IL
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>gi|386760068|ref|YP_006233285.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. JS]
gi|384933351|gb|AFI30029.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. JS]
Length = 196
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID IL
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>gi|364506078|pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506079|pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506080|pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506081|pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506082|pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506083|pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506084|pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID IL
Sbjct: 138 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>gi|291463572|pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
gi|291463573|pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
gi|291463574|pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
gi|291463575|pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
gi|291463576|pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
gi|291463577|pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
gi|291463578|pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
gi|291463586|pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463587|pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463588|pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463589|pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463590|pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463591|pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463592|pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463593|pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463594|pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463595|pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463596|pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463597|pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463598|pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463599|pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463600|pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463601|pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463602|pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463603|pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463604|pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463605|pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463606|pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID IL
Sbjct: 138 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>gi|297182365|gb|ADI18531.1| protease subunit of ATP-dependent clp proteases [uncultured SAR406
cluster bacterium HF4000_22B16]
Length = 202
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 129/196 (65%), Gaps = 4/196 (2%)
Query: 78 KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
+N+ L+P V+ G D+ S L + RI+F+G PI+ ++ I+Q + L D
Sbjct: 5 QNEIAQLIPMVVEQTGRTERAYDIYSRLLKERIVFLGTPIDDSISSLIIAQFLFLEAEDP 64
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
D DI +Y+N PGG I + +AI+D M++IKP V T+C G A+S A +LAGG+KG R A+P
Sbjct: 65 DKDIYLYINSPGGYITAGMAIFDTMNYIKPDVATICMGQASSMGAFLLAGGKKGKRSALP 124
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
N+RIM++QP G+ G D+K Q +E + R K++++ A TGQ I KV++ ++R+ F+S
Sbjct: 125 NSRIMIHQPMGGAEGQASDIKIQADEIIRLRGKLNKLLAKQTGQKISKVEKDSDRNYFMS 184
Query: 254 AAEAMEFGLIDGILET 269
A EA ++G+ID +LE+
Sbjct: 185 AVEAKKYGIIDTVLES 200
>gi|338729930|ref|YP_004659322.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
thermarum DSM 5069]
gi|335364281|gb|AEH50226.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
thermarum DSM 5069]
Length = 202
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 121/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ A ++QL+ L D D DI +Y+N PGGS+ + LAIY
Sbjct: 25 DIYSRLLKDRIVFLGYPIDDHTANLVVAQLLFLEAEDPDKDIHLYINSPGGSVTAGLAIY 84
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G AAS AA++LA G KG RYA+PNARIML+QP G+ G V+DV+
Sbjct: 85 DTMQYVKCDVVTICIGQAASMAAVLLASGTKGKRYALPNARIMLHQPLGGAEGPVKDVEI 144
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++ I+++ + TGQPIE++++ T+RD F+ A EA+ +GLID ++E
Sbjct: 145 ITKELLRIKNLINKILSEKTGQPIERIEKDTDRDFFMDAYEALNYGLIDKVIE 197
>gi|56478265|ref|YP_159854.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
aromaticum EbN1]
gi|67460188|sp|Q5P161.1|CLPP_AZOSE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56314308|emb|CAI08953.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
aromaticum EbN1]
Length = 212
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R+IF+ P+N + A ++QL+ L + + D D+
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLIVAQLLFLESENPDKDVYF 78
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ S +AIYD M +IKP V T+C G AAS + +LA GEKG R+ +PN+R+M+
Sbjct: 79 YINSPGGSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMI 138
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + R K++ M A TGQPIE++++ T+RDRF+SAA+A+E
Sbjct: 139 HQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAADAVE 198
Query: 260 FGLIDGIL 267
+G++D +L
Sbjct: 199 YGIVDKVL 206
>gi|332798601|ref|YP_004460100.1| ATP-dependent Clp protease proteolytic subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|438001582|ref|YP_007271325.1| ATP-dependent Clp protease proteolytic subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|332696336|gb|AEE90793.1| ATP-dependent Clp protease proteolytic subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|432178376|emb|CCP25349.1| ATP-dependent Clp protease proteolytic subunit [Tepidanaerobacter
acetatoxydans Re1]
Length = 194
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIFIG I+ VA AI+Q++ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFIGTSIDDTVASLAIAQMLYLESEDPDKDIRLYINSPGGSVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A++LA G +G RYA+PN+RIM++QP G G D++
Sbjct: 79 DTMQYIKPDVSTICMGLAASMGAVLLAAGTEGKRYALPNSRIMIHQPWGGVQGKAVDIET 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R ++ + A T Q IEK+++ T+RD F+S+ EA+E+GLID ++
Sbjct: 139 HAKEILRLRELLNEILANHTKQSIEKIEKDTDRDYFMSSKEALEYGLIDEVI 190
>gi|389843764|ref|YP_006345844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesotoga
prima MesG1.Ag.4.2]
gi|387858510|gb|AFK06601.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesotoga
prima MesG1.Ag.4.2]
Length = 205
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 130/192 (67%), Gaps = 4/192 (2%)
Query: 83 PLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P +P V+ G D+ + L RI+F+G PI+ V+ ++QL+ L + D + DI
Sbjct: 7 PFVPYVVEDRGRGERIFDIYTKLLSERIVFLGWPIDDEVSNIVVAQLLFLESQDPEKDIN 66
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGSI S LAIYD M +IKP + T+C G+AAS AI+LAGG KG R+A+PN+R+M
Sbjct: 67 LYINSPGGSITSGLAIYDTMQYIKPDISTICIGMAASMGAILLAGGTKGKRFALPNSRVM 126
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G +D++ + E + R +++++ A TGQ I+K+++ +RD F+S+ EA+
Sbjct: 127 IHQPFGGAEGVAKDIEIRAREILYLRDELNKILAKHTGQSIKKIEKDADRDFFMSSTEAV 186
Query: 259 EFGLIDGILETE 270
E+G+ID ++E +
Sbjct: 187 EYGMIDKVIEQK 198
>gi|284046814|ref|YP_003397154.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
woesei DSM 14684]
gi|283951035|gb|ADB53779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
woesei DSM 14684]
Length = 193
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 83 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ T G D+ S L RIIF+G ++ VA ++QL+ L + D D DI
Sbjct: 2 PLVPMVIERTARGEREFDIYSRLLNERIIFLGTAVDDQVANLIVAQLLHLESSDPDKDIS 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGSIY+ LAIYD M +IKP V T+C G+A S +++L GG +G R ++PN+RI+
Sbjct: 62 IYINSPGGSIYAGLAIYDTMQFIKPDVQTICCGIAMSMGSLLLMGGARGKRMSLPNSRIL 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP +G G D++ E + +R +ID +YA TGQP E+V ERDRF EA+
Sbjct: 122 IHQPSAGFEGQSTDIEIHAREIIKTRKRIDEIYAFHTGQPEERVNHDMERDRFFKPDEAV 181
Query: 259 EFGLIDGIL 267
E+GLID ++
Sbjct: 182 EYGLIDRVI 190
>gi|56750021|ref|YP_170722.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 6301]
gi|81300363|ref|YP_400571.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 7942]
gi|1705929|sp|P54415.1|CLPP1_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|67460444|sp|Q5N665.1|CLPP1_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|755165|gb|AAC67306.1| ClpP [Synechococcus elongatus PCC 7942]
gi|56684980|dbj|BAD78202.1| ATP-dependent protease ClpP [Synechococcus elongatus PCC 6301]
gi|81169244|gb|ABB57584.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
elongatus PCC 7942]
Length = 197
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 126/189 (66%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ S VA R ++QL+ L D + DI +
Sbjct: 1 MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M+ I+P V TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +D++ Q NE + + ++ + A TGQP+ +++ T+RD F+SA+EA+E
Sbjct: 121 HQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDRVID 189
>gi|385208255|ref|ZP_10035123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. Ch1-1]
gi|385180593|gb|EIF29869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. Ch1-1]
Length = 215
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 8/203 (3%)
Query: 71 SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 126
SY I+G L+P V+ G D+ S L R RI+F+ P+N A ++QL+
Sbjct: 4 SYPTITGLG----LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLL 59
Query: 127 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 186
L + + D DI Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++
Sbjct: 60 FLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQR 119
Query: 187 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 246
G RYA+PNARIM++QP GS G DV+ Q E + R +++ M A TG+ IE++ + T
Sbjct: 120 GKRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEEIARDT 179
Query: 247 ERDRFLSAAEAMEFGLIDGILET 269
+RD F+SA A +GL+D +LET
Sbjct: 180 DRDNFMSAHAAKTYGLVDEVLET 202
>gi|291463558|pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463559|pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463560|pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463561|pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463562|pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463563|pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463564|pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463565|pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463566|pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463567|pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463568|pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463569|pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463570|pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463571|pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID IL
Sbjct: 138 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>gi|326391008|ref|ZP_08212557.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter ethanolicus JW 200]
gi|392940442|ref|ZP_10306086.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter siderophilus SR4]
gi|325992953|gb|EGD51396.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter ethanolicus JW 200]
gi|392292192|gb|EIW00636.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter siderophilus SR4]
Length = 195
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K+D++ A TGQPIEK++ TERD F+ A EA +G+ID +L
Sbjct: 139 HAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEEAKAYGIIDEVL 190
>gi|33592842|ref|NP_880486.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis Tohama I]
gi|33596622|ref|NP_884265.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis 12822]
gi|33601237|ref|NP_888797.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica RB50]
gi|384204141|ref|YP_005589880.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis CS]
gi|408415562|ref|YP_006626269.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis 18323]
gi|410420626|ref|YP_006901075.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica MO149]
gi|410472787|ref|YP_006896068.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis Bpp5]
gi|412337420|ref|YP_006966175.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 253]
gi|427815119|ref|ZP_18982183.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 1289]
gi|427819401|ref|ZP_18986464.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica D445]
gi|427821908|ref|ZP_18988970.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica Bbr77]
gi|67460369|sp|Q7VXI7.1|CLPP_BORPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460372|sp|Q7W8X2.1|CLPP_BORPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460374|sp|Q7WK83.1|CLPP_BORBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|33572490|emb|CAE42062.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis Tohama I]
gi|33573323|emb|CAE37306.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis]
gi|33575672|emb|CAE32750.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica RB50]
gi|332382255|gb|AEE67102.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis CS]
gi|401777732|emb|CCJ63063.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis 18323]
gi|408442897|emb|CCJ49464.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis Bpp5]
gi|408447921|emb|CCJ59598.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica MO149]
gi|408767254|emb|CCJ52000.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 253]
gi|410566119|emb|CCN23679.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 1289]
gi|410570401|emb|CCN18574.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica D445]
gi|410587173|emb|CCN02206.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica Bbr77]
Length = 217
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQP+E++ TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211
>gi|91785004|ref|YP_560210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
xenovorans LB400]
gi|116243097|sp|Q13UT1.1|CLPP1_BURXL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|91688958|gb|ABE32158.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
xenovorans LB400]
Length = 215
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 8/203 (3%)
Query: 71 SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 126
SY I+G L+P V+ G D+ S L R RI+F+ P+N A ++QL+
Sbjct: 4 SYPTITGLG----LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLL 59
Query: 127 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 186
L + + D DI Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++
Sbjct: 60 FLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQR 119
Query: 187 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 246
G RYA+PNARIM++QP GS G DV+ Q E + R +++ M A TG+ IE++ + T
Sbjct: 120 GKRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEEIARDT 179
Query: 247 ERDRFLSAAEAMEFGLIDGILET 269
+RD F+SA A +GL+D +LET
Sbjct: 180 DRDNFMSAHAAKTYGLVDEVLET 202
>gi|223043057|ref|ZP_03613105.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus capitis SK14]
gi|417905699|ref|ZP_12549498.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus capitis VCU116]
gi|222443911|gb|EEE50008.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus capitis SK14]
gi|341598593|gb|EGS41093.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus capitis VCU116]
Length = 195
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ A TGQ IEK+QQ T+RD FL+A EA E+GLID ++E E
Sbjct: 139 AANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEAKEYGLIDEVMEPE 193
>gi|404330109|ref|ZP_10970557.1| ATP-dependent Clp protease proteolytic subunit [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 194
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ D+ S L ++RII +G I+ VA ++QL+ LA D + DI
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANAVVAQLLFLAAEDSEKDIS 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGSI + +AIYD M +IKPKV T+C G+AAS + +L GEKG RYA+PN+ IM
Sbjct: 62 LYINSPGGSITAGMAIYDTMQYIKPKVSTICIGMAASMGSFLLMAGEKGKRYALPNSEIM 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G G D++ + R K++ +YA TGQP E +++ T RD F+SA EA
Sbjct: 122 IHQPSGGMQGQASDMEIHAKRILQIREKLNHIYAERTGQPFEVIERDTNRDNFMSAEEAK 181
Query: 259 EFGLIDGIL 267
++GLID IL
Sbjct: 182 KYGLIDEIL 190
>gi|294501768|ref|YP_003565468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium QM B1551]
gi|295707118|ref|YP_003600193.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
megaterium DSM 319]
gi|384044395|ref|YP_005492412.1| ATP-dependent Clp protease proteolytic subunit [Bacillus megaterium
WSH-002]
gi|294351705|gb|ADE72034.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium QM B1551]
gi|294804777|gb|ADF41843.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium DSM 319]
gi|345442086|gb|AEN87103.1| ATP-dependent Clp protease proteolytic subunit [Bacillus megaterium
WSH-002]
Length = 195
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 119/175 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIILGSAIDDNVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ R K++ + A TGQP+E +Q+ T+RD F++A A+E+GLID +LE +
Sbjct: 139 AAKRILFLREKLNSILAERTGQPLEVLQRDTDRDNFMTAERALEYGLIDKVLEND 193
>gi|138896648|ref|YP_001127101.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
thermodenitrificans NG80-2]
gi|196249350|ref|ZP_03148048.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. G11MC16]
gi|166201825|sp|A4ISQ2.1|CLPP_GEOTN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|134268161|gb|ABO68356.1| ATP-dependent Clp protease [Geobacillus thermodenitrificans NG80-2]
gi|196211107|gb|EDY05868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. G11MC16]
Length = 196
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ A TGQPIE +++ T+RD F++A +A E+G+ID +L
Sbjct: 139 AAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQEYGIIDRVL 190
>gi|428774108|ref|YP_007165896.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
stanieri PCC 7202]
gi|428688387|gb|AFZ48247.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
stanieri PCC 7202]
Length = 238
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+G I+ +A ++QL+ L D DI +Y+N PGGS+YS +AI
Sbjct: 46 FDVYSRLLRERIIFLGTAIDDKLADSVVAQLLYLEAEDPKKDIYIYINSPGGSVYSGMAI 105
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C+G+AAS A +LAGG KG R +PN+RIM++QP G+ G D++
Sbjct: 106 YDTMQQIEPDVSTICYGIAASMGAFLLAGGAKGKRLGLPNSRIMIHQPLGGAQGQASDIE 165
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++ + TGQP E++ + TERD ++S+ EA E+G+ID I+
Sbjct: 166 IQAKEILYIKQRLNEILTHHTGQPFERISEDTERDFYMSSTEAKEYGIIDDII 218
>gi|334139130|ref|ZP_08512526.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF7]
gi|333603020|gb|EGL14444.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF7]
Length = 200
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
+P V+ P D+ S L ++RIIF+G P+N VA I+QL+ L D D DI +
Sbjct: 3 FIPMVVEPDARGERAYDIYSRLLKDRIIFLGTPVNDQVANAIIAQLLFLDAQDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI + +AIYD M +IK V T+C G+AAS A +LA G KG RYA+PN+ +M+
Sbjct: 63 YINSPGGSITAGMAIYDTMQFIKSDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + + R ++++ A TGQP+E++ + T+RD F+SAAEA
Sbjct: 123 HQPLGGAEGQATDIEIRARRILKMRENLNKILAERTGQPLERIDKDTDRDYFMSAAEASA 182
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 183 YGLIDKVIE 191
>gi|314933077|ref|ZP_07840443.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus caprae C87]
gi|313654396|gb|EFS18152.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus caprae C87]
Length = 195
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ A TGQ IEK+QQ T+RD FL+A EA E+GLID ++E E
Sbjct: 139 AANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEAKEYGLIDEVMEPE 193
>gi|350267685|ref|YP_004878992.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
subtilis subsp. spizizenii TU-B-10]
gi|349600572|gb|AEP88360.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
subtilis subsp. spizizenii TU-B-10]
Length = 198
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID IL
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>gi|163857103|ref|YP_001631401.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii
DSM 12804]
gi|226706441|sp|A9IR54.1|CLPP_BORPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|163260831|emb|CAP43133.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii]
Length = 217
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQP+E++ TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211
>gi|296330330|ref|ZP_06872811.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305676065|ref|YP_003867737.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. spizizenii str. W23]
gi|398304937|ref|ZP_10508523.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
vallismortis DV1-F-3]
gi|443630850|ref|ZP_21115031.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|296152598|gb|EFG93466.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305414309|gb|ADM39428.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. spizizenii str. W23]
gi|443348655|gb|ELS62711.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 198
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID IL
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>gi|139437042|ref|ZP_01771202.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC
25986]
gi|133776689|gb|EBA40509.1| endopeptidase Clp [Collinsella aerofaciens ATCC 25986]
Length = 210
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 132/191 (69%), Gaps = 4/191 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
+ L+P V+ TP G D+ S L +RIIF+G+ INS+ A ++QL+ L + D + D
Sbjct: 10 DSALVPYVIEQTPRGERSYDIYSRLLNDRIIFLGEEINSVSANLVVAQLLHLESQDAEKD 69
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGG +YS LAI D M++IKP+V T+C G+AAS AA++L+ G KG R+ +P+++
Sbjct: 70 ISLYINSPGGEVYSGLAILDTMNFIKPQVSTICVGMAASMAAVLLSAGAKGKRFCLPHSK 129
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
+M++QP G+ G +++ E +R +++++ + +GQPIEKVQ TERD +L+A E
Sbjct: 130 VMIHQPSGGAQGQQTEIEIVAEEIKKTRRELNQILSDASGQPIEKVQADTERDNYLTAVE 189
Query: 257 AMEFGLIDGIL 267
A+++GLID I+
Sbjct: 190 ALDYGLIDRIV 200
>gi|209517482|ref|ZP_03266323.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. H160]
gi|209502136|gb|EEA02151.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. H160]
Length = 218
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDICF 72
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARIMI 132
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G DV+ Q E + R +++ M A TG+ IE++ + T+RD F+SA EA +
Sbjct: 133 HQPSGGGQGTAADVEIQAKEVLYVRARLNAMMAERTGRSIEEISRDTDRDNFMSALEARD 192
Query: 260 FGLIDGILE 268
+GLID +LE
Sbjct: 193 YGLIDDVLE 201
>gi|170693532|ref|ZP_02884691.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
graminis C4D1M]
gi|170141687|gb|EDT09856.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
graminis C4D1M]
Length = 219
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 120/190 (63%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISF 72
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRGKRYALPNARIMI 132
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP GS G D+ Q E + R +++ M A TG+ IE+V + T+RD F+SA+ A
Sbjct: 133 HQPSGGSQGTAADIDIQAKEVLYLRERLNAMMAERTGRSIEEVARDTDRDNFMSASAAKT 192
Query: 260 FGLIDGILET 269
+GL+D +LET
Sbjct: 193 YGLVDEVLET 202
>gi|289577854|ref|YP_003476481.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermoanaerobacter italicus Ab9]
gi|297544142|ref|YP_003676444.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|289527567|gb|ADD01919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter italicus Ab9]
gi|296841917|gb|ADH60433.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 195
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMHGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K+DR+ A TGQPIEK++ TERD F+ A +A +G+ID +L
Sbjct: 139 HAERILKLRDKLDRILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190
>gi|218247705|ref|YP_002373076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8801]
gi|257060958|ref|YP_003138846.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8802]
gi|218168183|gb|ACK66920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8801]
gi|256591124|gb|ACV02011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8802]
Length = 229
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 41 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 100
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+CFG+AAS A +L GG G R A+P++RIM++QP G+ G +++
Sbjct: 101 YDTMQQIRPDVATICFGLAASMGAFLLCGGAPGKRMALPSSRIMIHQPLGGAQGQAVEIE 160
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++ M A+ TGQP + + + TERD F+SA EA E+GLID ++
Sbjct: 161 IQAKEILYIKRRLNEMLASHTGQPFDTIAEDTERDFFMSAQEAKEYGLIDKVI 213
>gi|443476633|ref|ZP_21066529.1| ATP-dependent Clp protease proteolytic subunit [Pseudanabaena
biceps PCC 7429]
gi|443018385|gb|ELS32644.1| ATP-dependent Clp protease proteolytic subunit [Pseudanabaena
biceps PCC 7429]
Length = 223
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 128/204 (62%), Gaps = 7/204 (3%)
Query: 68 TEHSYKIISGKNDNPPLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAIS 123
T + + I S +N ++P V+ G D+ S L R RI+F+G ++ A +S
Sbjct: 9 TSNQFAIASTQNQ---VVPMVVEQSGKGERAFDIFSRLLRERIVFLGSQVDDTTANLIMS 65
Query: 124 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 183
QL+ L D D DI +Y+N PGGS+Y+ +AI D M+ ++P V T+C G+AAS A +LA
Sbjct: 66 QLLFLEAEDPDKDIYLYINSPGGSVYAGMAILDTMNHVRPDVCTICMGLAASMGAFLLAS 125
Query: 184 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243
G KG R ++PNARIM++QP G+ G D++ Q E + + ++ M A TG+PIE+++
Sbjct: 126 GAKGKRMSLPNARIMIHQPLGGAQGQAVDIEIQAREILYIKRSLNEMLATSTGKPIEQIE 185
Query: 244 QYTERDRFLSAAEAMEFGLIDGIL 267
Q TERD F+S AEA ++GLID +L
Sbjct: 186 QDTERDFFMSPAEAQQYGLIDQVL 209
>gi|291278625|ref|YP_003495460.1| ATP-dependent Clp protease proteolytic subunit [Deferribacter
desulfuricans SSM1]
gi|290753327|dbj|BAI79704.1| ATP-dependent Clp protease, proteolytic subunit [Deferribacter
desulfuricans SSM1]
Length = 195
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 118/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+Q++ L D D DI +Y+N PGG I S LAIY
Sbjct: 20 DIYSRLLKDRIIFLGTAIDDNVANVVIAQMLFLEAEDPDKDIYLYINSPGGVITSGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G AAS AA++L+ G KG R+A+PNARIM++QP G G +D++
Sbjct: 80 DTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRFALPNARIMIHQPLGGFQGQAKDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
NE + + ++ + + TGQPIEK++ ++RD F+SA EA E+GLID +E
Sbjct: 140 HANEILRMKKMLNEILSKNTGQPIEKIEMDSDRDFFMSAMEAKEYGLIDDCIE 192
>gi|126659496|ref|ZP_01730629.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
CCY0110]
gi|126619230|gb|EAZ89966.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
CCY0110]
Length = 201
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 118/173 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 13 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQIYINSPGGSVYAGLAI 72
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 73 YDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVEIE 132
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++ M A TGQP +K+ TERD F+SA EA+++GLID ++
Sbjct: 133 IQAKEILYIKKRLNDMLAEHTGQPYDKIATDTERDFFMSAQEAVDYGLIDKVI 185
>gi|421858505|ref|ZP_16290772.1| Clp protease [Paenibacillus popilliae ATCC 14706]
gi|410831950|dbj|GAC41209.1| Clp protease [Paenibacillus popilliae ATCC 14706]
Length = 192
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N MVA I+Q++ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSQVNDMVANSIIAQMLFLQADDPDKDIHLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTICVGMAASMGAFLLNAGSKGKRFALPNSEIMIHQPLGGAEGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R K++ + A TGQP+E++++ T+RD F+SA EA+E+GL+D +L
Sbjct: 139 RARRILKLRDKLNHILAERTGQPLERIERDTDRDYFMSAEEALEYGLVDKVLH 191
>gi|354586092|ref|ZP_09004765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
lactis 154]
gi|353183068|gb|EHB48600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
lactis 154]
Length = 198
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 120/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+Q++ L+ D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG RYA+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYALPNSEIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R K++R+ A TGQP+E++++ T+RD F++A EA E+GL+D +LE
Sbjct: 139 RARRILKMRDKLNRILAERTGQPLERIEKDTDRDYFMTAEEAKEYGLVDQVLE 191
>gi|284047279|ref|YP_003397619.1| endopeptidase Clp [Conexibacter woesei DSM 14684]
gi|283951500|gb|ADB54244.1| Endopeptidase Clp [Conexibacter woesei DSM 14684]
Length = 194
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Query: 83 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ +P G D+ S L R+IF+GQ +N +A ++QL+ L ++D D DI
Sbjct: 3 PLVPMVVEQSPRGERSFDIYSRLLNERVIFLGQEVNDDIANLVVAQLLHLESVDADKDIN 62
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGS+ + AIYD M I+P V T+C G+A S + +L GG G R ++PN+RI+
Sbjct: 63 LYINSPGGSVSAGFAIYDTMQLIRPDVATICVGIAMSMGSFLLCGGASGKRMSLPNSRIL 122
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
+QP G G D++ EA+ +R +++ +YA TGQPIE++ ERDR+ + +A+
Sbjct: 123 NHQPSGGFQGQATDIQIHAEEALAARRRLEELYALHTGQPIERIHDDMERDRYFTPEQAV 182
Query: 259 EFGLIDGILE 268
E+GLID I E
Sbjct: 183 EYGLIDKIYE 192
>gi|452125564|ref|ZP_21938148.1| ATP-dependent Clp protease proteolytic subunit [Bordetella holmesii
F627]
gi|451924794|gb|EMD74935.1| ATP-dependent Clp protease proteolytic subunit [Bordetella holmesii
F627]
Length = 217
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G+KG R+++PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQP+E++ TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAKEILDLRERLNRILAENTGQPVERIAIDTERDNFMSAQDAVSYGLVDKVL 211
>gi|383758647|ref|YP_005437632.1| ATP-dependent Clp protease, protease subunit ClpP [Rubrivivax
gelatinosus IL144]
gi|381379316|dbj|BAL96133.1| ATP-dependent Clp protease, protease subunit ClpP [Rubrivivax
gelatinosus IL144]
Length = 202
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 120/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RI+F+ P+N VA +QL+ L + + D DI +Y+N PGGS+ + L+I+
Sbjct: 27 DIYSRLLRERIVFLVGPVNDQVANLVCAQLLFLESENPDKDIFLYINSPGGSVSAGLSIF 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP+V T+C G+AAS + +L G KG R+A+PN+R+M++QP G+ G D++
Sbjct: 87 DTMNFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALPNSRVMIHQPSGGAQGQASDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + +R +++R+YA TGQ IEK++ ERD +LS +EA ++GLID +LE
Sbjct: 147 QAREIIKTREQLNRIYAERTGQSIEKIEADMERDMWLSPSEAKDYGLIDQVLE 199
>gi|452995870|emb|CCQ92258.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
ultunense Esp]
Length = 197
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ A ++QL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIIVLGSEIDDANANLVVAQLLFLAAEDPDKDIYLYINSPGGSITAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G G ED++
Sbjct: 78 DTMQFIKPPVSTICIGIAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGVRGQAEDIRI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +R KI+++ A TGQP+E++ + T+RD F+SA EA E+G++D ++
Sbjct: 138 HADWILRTREKINQILAERTGQPLERIAKDTDRDFFMSAEEAKEYGIVDAVI 189
>gi|291550775|emb|CBL27037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
torques L2-14]
Length = 193
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V TVC G+AAS A +L+GG+KG R+A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLSGGKKGKRFALPNAEIMIHQPSGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ ++ K++ + AA TG+P+E +QQ TERD F+SA EA E+GLID ++
Sbjct: 139 AAEHILRTKKKLNEILAANTGKPLEVIQQDTERDNFMSAEEAKEYGLIDEVI 190
>gi|116074350|ref|ZP_01471612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. RS9916]
gi|116069655|gb|EAU75407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. RS9916]
Length = 229
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P ++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI
Sbjct: 28 PGVLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKDI 87
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 88 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 147
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP+E + + T+RD FLS AEA
Sbjct: 148 MIHQPMGGAQGQAVDIEIQAQEILYLKETLNGLMAEHTGQPLETIAEDTDRDHFLSPAEA 207
Query: 258 MEFGLIDGILET 269
+E+GLID ++++
Sbjct: 208 VEYGLIDRVVDS 219
>gi|402815454|ref|ZP_10865046.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
alvei DSM 29]
gi|402506494|gb|EJW17017.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
alvei DSM 29]
Length = 198
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+QL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDDVANSVIAQLLFLQADDPEKDIFLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS +++L G G R A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQHIKPDVSTICVGLAASMGSLLLTAGAPGKRIALPNSEIMIHQPLGGVRGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +RHK++++Y TGQPIEK+++ T+RD F+SA EA E+GL+D +L
Sbjct: 139 HADWILKTRHKLNQIYVERTGQPIEKIERDTDRDNFMSADEAKEYGLVDQVLH 191
>gi|337750712|ref|YP_004644874.1| protein ClpP [Paenibacillus mucilaginosus KNP414]
gi|379723759|ref|YP_005315890.1| protein ClpP [Paenibacillus mucilaginosus 3016]
gi|386726512|ref|YP_006192838.1| protein ClpP [Paenibacillus mucilaginosus K02]
gi|336301901|gb|AEI45004.1| ClpP [Paenibacillus mucilaginosus KNP414]
gi|378572431|gb|AFC32741.1| ClpP [Paenibacillus mucilaginosus 3016]
gi|384093637|gb|AFH65073.1| protein ClpP [Paenibacillus mucilaginosus K02]
Length = 196
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+G I+ VA I+QL+ LA D D DI +
Sbjct: 3 LVPMVVEQEGRGERSYDIYSRLLKDRIIFLGSAIDDDVANLVIAQLLFLAATDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + IYD M +IKP V T+C G+AAS +++L G G R+A+PN+ +M+
Sbjct: 63 YINSPGGSVTAGMGIYDTMQFIKPDVSTICVGLAASMGSLLLTAGAPGKRFALPNSEVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+K + + ++ K++ +Y A TGQP +K+++ T+RD F+SAAEA E
Sbjct: 123 HQPLGGVRGQASDIKIHADWIIKTKRKLNEIYVARTGQPYDKIERDTDRDNFMSAAEAKE 182
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 183 YGLIDAVI 190
>gi|295695312|ref|YP_003588550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kyrpidia
tusciae DSM 2912]
gi|295410914|gb|ADG05406.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kyrpidia
tusciae DSM 2912]
Length = 196
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ +VA ++QL+ LA D+ DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTGIDDIVANLVVAQLLFLAAEDDKKDIRLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G+AAS A +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVSTVCIGMAASMGAFLLAAGTKGKRFALPNSEIMIHQPLGGVRGQAADIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ KI+R+ + TGQP+EK+++ T+RD F+ A EA +GLID ++
Sbjct: 139 HADWILRTKDKINRILSERTGQPLEKIERDTDRDNFMDAEEAKAYGLIDEVI 190
>gi|67923459|ref|ZP_00516936.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
gi|67854694|gb|EAM49976.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
Length = 262
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 117/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 74 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 133
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 134 YDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVEIE 193
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++ M A TGQP + + TERD F+SA EA+++GLID ++
Sbjct: 194 IQAKEILYIKKRLNDMLAEHTGQPFDTIAADTERDFFMSAQEAVDYGLIDKVI 246
>gi|187925164|ref|YP_001896806.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
phytofirmans PsJN]
gi|187716358|gb|ACD17582.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phytofirmans PsJN]
Length = 215
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 119/190 (62%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDICF 72
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARIMI 132
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP GS G DV+ Q E + R +++ M A TG+ IE + + T+RD F+SA A
Sbjct: 133 HQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEAIARDTDRDNFMSAQSAKT 192
Query: 260 FGLIDGILET 269
+GL+D +LET
Sbjct: 193 YGLVDEVLET 202
>gi|302390303|ref|YP_003826124.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermosediminibacter oceani DSM 16646]
gi|302200931|gb|ADL08501.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermosediminibacter oceani DSM 16646]
Length = 200
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+FIG PI+ +A I+QL+ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIVFIGTPIDDSIASLVIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A++LAGG G R A+PN+RIM++QP G G D++
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAVLLAGGAPGKRLALPNSRIMIHQPWGGVQGRALDIET 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R ++ + T QP+E++++ TERD F+SA EA ++GLID ++
Sbjct: 139 HAKEILRLREVLNEILVKHTKQPLERIERDTERDYFMSAVEAKQYGLIDEVI 190
>gi|388491004|gb|AFK33568.1| unknown [Lotus japonicus]
Length = 308
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 121/188 (64%)
Query: 83 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
P PA G D +L R RI+F+G I+ VA +SQL+ L D DI +++N
Sbjct: 82 PQTPATAIRGAETDAMWLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFIN 141
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
PGGS+ + +AIYD + ++ V T+ G+AAS A+IIL GG KG R+AMPN RIM++QP
Sbjct: 142 SPGGSLSATMAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQP 201
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
G+ G DV+ Q E + +++ + R+ + FTG+ E+VQ+ +RDR++S EA+E+G+
Sbjct: 202 LGGASGQAIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGI 261
Query: 263 IDGILETE 270
IDG+++ E
Sbjct: 262 IDGVIDKE 269
>gi|416405032|ref|ZP_11687843.1| ATP-dependent Clp protease proteolytic subunit [Crocosphaera
watsonii WH 0003]
gi|357261367|gb|EHJ10638.1| ATP-dependent Clp protease proteolytic subunit [Crocosphaera
watsonii WH 0003]
Length = 262
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 117/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 74 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 133
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 134 YDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVEIE 193
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++ M A TGQP + + TERD F+SA EA+++GLID ++
Sbjct: 194 IQAKEILYIKKRLNDMLAEHTGQPFDTIAADTERDFFMSAQEAVDYGLIDKVI 246
>gi|298243590|ref|ZP_06967397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ktedonobacter
racemifer DSM 44963]
gi|297556644|gb|EFH90508.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ktedonobacter
racemifer DSM 44963]
Length = 218
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++PAV+ TP G DL S L + RIIF+G PI+ VA ++QL+ L + D DI M
Sbjct: 25 IIPAVVESTPRGERSWDLYSRLLKERIIFVGTPIDDQVANSVVAQLLYLQSEDATKDIQM 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG IY+ LAIYD M W++P V T C G+A S A+ILA G+KG RY +PN+ +++
Sbjct: 85 YINSPGGVIYAGLAIYDTMQWLRPDVSTFCMGMAMSMGAVILAAGQKGKRYTLPNSTVLI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ E + R + + A TGQ IE++ Q ++R+ +LSA +A+E
Sbjct: 145 HQPLGGAEGQAADIEITAREILRLRRNLYEILAKHTGQTIERIMQDSDRNYYLSAQQAVE 204
Query: 260 FGLIDGIL 267
+GL+D +L
Sbjct: 205 YGLVDDVL 212
>gi|255557703|ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
gi|223540927|gb|EEF42485.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
Length = 294
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 121/186 (65%)
Query: 83 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
P PA G D +L R RI+F+G I+ VA ISQL+ L D DI +++N
Sbjct: 68 PQTPATAMRGAESDAMGLLLRERIVFLGNNIDDFVADATISQLLLLDAQDPTKDIRLFIN 127
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
CPGGS+ + +AIYD + ++ V TV G++AS A+IIL GG KG R+AMPN RIM++QP
Sbjct: 128 CPGGSLSATMAIYDVVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMVHQP 187
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
G+ G DV+ Q E + +++ + R+ + FTG+ +E+V + +RDR++S EA+E+G+
Sbjct: 188 LGGASGQAIDVEIQAREIMHNKNNVVRIISGFTGRTVEQVLKDIDRDRYMSPIEAVEYGI 247
Query: 263 IDGILE 268
IDG+++
Sbjct: 248 IDGVID 253
>gi|157364285|ref|YP_001471052.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
lettingae TMO]
gi|167008651|sp|A8F754.1|CLPP_THELT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157314889|gb|ABV33988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
lettingae TMO]
Length = 199
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 130/191 (68%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RI+F+G I+ VA ++QL+ L D D DI +
Sbjct: 7 LIPTVIESTGRYERAYDIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQL 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IK V T+C G AAS AA++LA G KG R+A+PNARIML
Sbjct: 67 YINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIML 126
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G V+DV+ E + ++ I+ + + TGQP++++++ T+RD F+SA EA++
Sbjct: 127 HQPLGGAEGPVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEALD 186
Query: 260 FGLIDGILETE 270
+GL+D ++E++
Sbjct: 187 YGLVDKVIESK 197
>gi|372488837|ref|YP_005028402.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dechlorosoma
suillum PS]
gi|359355390|gb|AEV26561.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dechlorosoma
suillum PS]
Length = 213
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 7/204 (3%)
Query: 73 KIISGKNDNPP---LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQL 125
KI +G +P L+P V+ G D+ S L + RI+F+ P+N A ++QL
Sbjct: 2 KIDNGSQWDPQALGLVPMVVEQSGRGERAFDIYSRLLKERIVFLVGPVNDASANLVVAQL 61
Query: 126 VTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 185
+ L + D DI Y+N PGGS+ + L+IYD M +IKP V T+C G AAS A +L G
Sbjct: 62 LFLEADNPDKDIFFYINSPGGSVTAGLSIYDTMQFIKPDVSTLCMGQAASMGAFLLNAGA 121
Query: 186 KGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQY 245
KG R+A+PN+R+M++QP G G D++ E + R K++ + A +GQP++++++
Sbjct: 122 KGKRFALPNSRVMIHQPMGGFQGQASDIEIHAKEILSLRAKLNEIMAKHSGQPVDRIEKD 181
Query: 246 TERDRFLSAAEAMEFGLIDGILET 269
T+RD FLSAAEAME+GLID +L +
Sbjct: 182 TDRDNFLSAAEAMEYGLIDKVLSS 205
>gi|154687585|ref|YP_001422746.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|308175199|ref|YP_003921904.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens DSM 7]
gi|375363903|ref|YP_005131942.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|384161083|ref|YP_005543156.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens TA208]
gi|384165974|ref|YP_005547353.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens LL3]
gi|384170169|ref|YP_005551547.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens XH7]
gi|384266990|ref|YP_005422697.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385266358|ref|ZP_10044445.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. 5B6]
gi|387900080|ref|YP_006330376.1| ATP-dependent Clp protease, protease subunit [Bacillus
amyloliquefaciens Y2]
gi|394991001|ref|ZP_10383811.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. 916]
gi|421730139|ref|ZP_16169268.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|429506759|ref|YP_007187943.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|451345383|ref|YP_007444014.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens IT-45]
gi|452857085|ref|YP_007498768.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|166201799|sp|A7Z939.1|CLPP_BACA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|154353436|gb|ABS75515.1| ClpP [Bacillus amyloliquefaciens FZB42]
gi|307608063|emb|CBI44434.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens DSM 7]
gi|328555171|gb|AEB25663.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens TA208]
gi|328913529|gb|AEB65125.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens LL3]
gi|341829448|gb|AEK90699.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens XH7]
gi|371569897|emb|CCF06747.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|380500343|emb|CCG51381.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385150854|gb|EIF14791.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. 5B6]
gi|387174190|gb|AFJ63651.1| ATP-dependent Clp protease, protease subunit [Bacillus
amyloliquefaciens Y2]
gi|393808148|gb|EJD69457.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. 916]
gi|407076105|gb|EKE49089.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|429488349|gb|AFZ92273.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|449849141|gb|AGF26133.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens IT-45]
gi|452081345|emb|CCP23112.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 198
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID +L
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSADEALEYGLIDKVL 190
>gi|118482644|gb|ABK93241.1| unknown [Populus trichocarpa]
Length = 297
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 122/188 (64%)
Query: 83 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
P PA G D +L R RI+F+G I+ VA ISQL+ L D DI +++N
Sbjct: 71 PQTPATSMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVN 130
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
CPGGS+ + +AIYD + ++ V T+ G++AS A+IIL GG KG R+AMPN RIM++QP
Sbjct: 131 CPGGSLSASMAIYDVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQP 190
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
G+ G DV+ Q E + +++ I R+ + FT + +E+VQ+ +RDR++S EA+E+G+
Sbjct: 191 LGGASGQAIDVEIQAREIMHNKNNIIRIVSGFTSRTVEQVQKDMDRDRYMSPIEAVEYGI 250
Query: 263 IDGILETE 270
IDG+++ +
Sbjct: 251 IDGVIDRD 258
>gi|217077313|ref|YP_002335031.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
africanus TCF52B]
gi|419759889|ref|ZP_14286174.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
africanus H17ap60334]
gi|217037168|gb|ACJ75690.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
africanus TCF52B]
gi|407514928|gb|EKF49714.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
africanus H17ap60334]
Length = 201
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 122/175 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I+ VA ++QL+ L D D DI +Y+N PGGS+ + LAIY
Sbjct: 24 DIYSRLLKDRIVFLGSAIDDHVANLVVAQLLFLEAEDPDKDIQLYINSPGGSVSAGLAIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G AAS A++LAGG KG R+++PN+RIM++QP G+ G +DV+
Sbjct: 84 DTMQYIKCDVATICIGQAASMGAVLLAGGTKGKRFSLPNSRIMIHQPLGGAEGPAKDVEI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + ++KI+ + + TGQPIE++++ T+RD F++ EA+E+GLID +++ E
Sbjct: 144 MTKELLRIKNKINEILSFHTGQPIERIEKDTDRDFFMTPEEALEYGLIDKVIKPE 198
>gi|433460812|ref|ZP_20418435.1| ATP-dependent Clp protease proteolytic subunit [Halobacillus sp.
BAB-2008]
gi|432191000|gb|ELK47985.1| ATP-dependent Clp protease proteolytic subunit [Halobacillus sp.
BAB-2008]
Length = 196
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ +A +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSPIDDNIANSVVSQLLFLAADDPEKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L GE G RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICTGMAASMGAFLLNAGEPGKRYALPNSEVMIHQPLGGTQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ + TGQPIE +++ T+RD F+SA EA+E+GLID ++
Sbjct: 139 HAKRIIKMREKLNQILSERTGQPIEVIERDTDRDNFMSAHEAVEYGLIDKVM 190
>gi|123967079|ref|YP_001012160.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9515]
gi|123201445|gb|ABM73053.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9515]
Length = 204
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 122/196 (62%), Gaps = 4/196 (2%)
Query: 79 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 134
N+ +P V+ G D+ S L R RIIF+G IN V ++QL+ L D D
Sbjct: 8 NNTKSAIPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVTDSLVAQLLFLEAEDPD 67
Query: 135 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 194
DI +Y+N PGGS+ + LAIYD M I P V T+CFGVAAS A +L+GG KG R A+PN
Sbjct: 68 KDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPN 127
Query: 195 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+RIM++QP G+ G +++ Q E + + ++ + + TGQ +EK+ + TERD FLS
Sbjct: 128 SRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLSEHTGQSLEKINEDTERDYFLSP 187
Query: 255 AEAMEFGLIDGILETE 270
EA+++GLID +++ +
Sbjct: 188 EEAVQYGLIDKVIKND 203
>gi|345017119|ref|YP_004819472.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344032462|gb|AEM78188.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 195
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K+D++ A TGQPIEK++ TERD F+ A +A +G+ID +L
Sbjct: 139 HAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190
>gi|209525239|ref|ZP_03273781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
maxima CS-328]
gi|376006287|ref|ZP_09783579.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
gi|423065156|ref|ZP_17053946.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis C1]
gi|209494254|gb|EDZ94567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
maxima CS-328]
gi|375325348|emb|CCE19332.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
gi|406713288|gb|EKD08459.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis C1]
Length = 237
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
DL S L R+RIIF+G PI+ VA +Q++ L + D + DI +Y+N PGGS+ + + I
Sbjct: 50 FDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQLYINSPGGSVTAGMGI 109
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C+G+AAS A +LA G G R ++P++RIM++QP G+ G D++
Sbjct: 110 YDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIMIHQPLGGAQGQAIDIE 169
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + +H ++ + A TGQPIE++ TERD F+SAAEA E+GLID ++
Sbjct: 170 IQAKEILYHKHTLNTLLAQHTGQPIERINADTERDFFMSAAEAQEYGLIDNVI 222
>gi|164686707|ref|ZP_02210735.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM
16795]
gi|164604097|gb|EDQ97562.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium bartlettii DSM 16795]
Length = 193
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 122/191 (63%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+ +N A ++QL+ L D D DI +
Sbjct: 3 LVPTVVEQTGRGERAYDIYSRLLKDRIIFLSDEVNDTTASLVVAQLLFLEAEDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM+
Sbjct: 63 YINSPGGSVTAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLNAGAKGKRFALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + + +++++ + TGQPIEK+Q+ TERD F+SA EA E
Sbjct: 123 HQPLGGAKGQATDIEIHAKWILKIKERLNKILSERTGQPIEKIQEDTERDNFMSAQEAKE 182
Query: 260 FGLIDGILETE 270
+GLID ++E +
Sbjct: 183 YGLIDEVIEKK 193
>gi|258511812|ref|YP_003185246.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|384135662|ref|YP_005518376.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|257478538|gb|ACV58857.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|339289747|gb|AEJ43857.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 198
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ +G PI+ VA ++QL+ LA D + DI MY+N PGGS+ + +AIY
Sbjct: 20 DIYSRLLKDRIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMYINSPGGSVTAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M I+P V T+C G+AAS A +LA GEKG RYA+PNA IM++QP G G D+K
Sbjct: 80 DTMQHIRPAVSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLGGVEGQASDIKI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++R+ + TGQP+E +++ T+RD F++A EA +GLID +L
Sbjct: 140 HAEWILKTKDKLNRLLSERTGQPLEVIERDTDRDHFMTAEEAKAYGLIDEVLH 192
>gi|417644372|ref|ZP_12294370.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus warneri VCU121]
gi|445060249|ref|YP_007385653.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
warneri SG1]
gi|330684877|gb|EGG96562.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus epidermidis VCU121]
gi|443426306|gb|AGC91209.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
warneri SG1]
Length = 196
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG RYA+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRYALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+++ TGQ IEK+QQ T+RD FL+A EA +GL+D ++E E
Sbjct: 139 AANHILKTREKLNRIFSERTGQSIEKIQQDTDRDNFLTAEEAKAYGLVDEVMEPE 193
>gi|218290814|ref|ZP_03494883.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius LAA1]
gi|218239172|gb|EED06373.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius LAA1]
Length = 198
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ +G PI+ VA ++QL+ LA D + DI MY+N PGGS+ + +AIY
Sbjct: 20 DIYSRLLKDRIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMYINSPGGSVTAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M I+P V T+C G+AAS A +LA GEKG RYA+PNA IM++QP G G D+K
Sbjct: 80 DTMQHIRPAVSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLGGVEGQASDIKI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++R+ + TGQP+E +++ T+RD F++A EA +GLID +L
Sbjct: 140 HAEWILKTKDKLNRLLSERTGQPLEVIERDTDRDHFMTAEEAKAYGLIDEVLH 192
>gi|78188367|ref|YP_378705.1| peptidase S14, ClpP [Chlorobium chlorochromatii CaD3]
gi|90101406|sp|Q3ATL3.1|CLPP_CHLCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|78170566|gb|ABB27662.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
chlorochromatii CaD3]
Length = 225
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 132/212 (62%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISG---KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG + + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHAKKLYSGAIEQGISNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGTGIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P++ TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPEISTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R ++ + A TG
Sbjct: 125 GAFLLASGNKGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
QP+EKV++ +ERDR+++ EA+E+GLID I E
Sbjct: 185 QPVEKVREDSERDRWMNPQEALEYGLIDAIFE 216
>gi|150388889|ref|YP_001318938.1| ATP-dependent Clp protease proteolytic subunit [Alkaliphilus
metalliredigens QYMF]
gi|167008644|sp|A6TM61.1|CLPP_ALKMQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|149948751|gb|ABR47279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
metalliredigens QYMF]
Length = 194
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G IN + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIFSRLLKERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PNA +M++QP G+ G ED++
Sbjct: 79 DTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQAEDIRI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
V R ++++ TGQP+E+VQ+ T+RD F+ A EA E+G+ID ++
Sbjct: 139 HAERIVKLRDTLNKILVERTGQPLERVQKDTDRDFFMEAKEAKEYGIIDEVI 190
>gi|167038050|ref|YP_001665628.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040915|ref|YP_001663900.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
sp. X514]
gi|256752437|ref|ZP_05493296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter ethanolicus CCSD1]
gi|300914951|ref|ZP_07132267.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X561]
gi|307723815|ref|YP_003903566.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X513]
gi|320116459|ref|YP_004186618.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|226706551|sp|B0KBA4.1|CLPP_THEP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706552|sp|B0K533.1|CLPP_THEPX RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166855155|gb|ABY93564.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X514]
gi|166856884|gb|ABY95292.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256748706|gb|EEU61751.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter ethanolicus CCSD1]
gi|300889886|gb|EFK85032.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X561]
gi|307580876|gb|ADN54275.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X513]
gi|319929550|gb|ADV80235.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 195
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K+D++ A TGQPIEK++ TERD F+ A +A +G+ID +L
Sbjct: 139 HAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190
>gi|210634106|ref|ZP_03297994.1| hypothetical protein COLSTE_01912 [Collinsella stercoris DSM 13279]
gi|210158957|gb|EEA89928.1| endopeptidase Clp [Collinsella stercoris DSM 13279]
Length = 206
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 130/188 (69%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L +RI+F+G+ +NS+ A I+QL+ L + D + DI +
Sbjct: 9 LVPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVNSVTANLVIAQLLHLESQDAEKDISL 68
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG +YS LAI D M++IKP V T+C G+AAS AA++LAGG KG R+++P+++IM+
Sbjct: 69 YINSPGGEVYSGLAILDTMNYIKPDVSTICVGMAASMAAVLLAGGAKGKRFSLPHSKIMI 128
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ E +R ++++ A TG+P ++V++ TERD +L A +A+E
Sbjct: 129 HQPSGGAQGQQTEIEIAAREIRETRTTLNQILADATGKPFDQVERDTERDNYLRAEQALE 188
Query: 260 FGLIDGIL 267
+GLID I+
Sbjct: 189 YGLIDRIV 196
>gi|189424987|ref|YP_001952164.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
lovleyi SZ]
gi|226706453|sp|B3E1Z4.1|CLPP_GEOLS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189421246|gb|ACD95644.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
lovleyi SZ]
Length = 197
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RI+F+G IN VA I+QL+ L D D DI +Y+N PGG + + +AI+
Sbjct: 18 DIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIF 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G AAS A++L GEKG R+A+P+ARIM++QP GS G D+
Sbjct: 78 DTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIHQPSGGSRGQATDIMI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++R+ A +GQP+E+++Q TERD F+SA EA +GLID ++
Sbjct: 138 QAEEILRMKRELNRLLADLSGQPVERLEQDTERDFFMSAEEARNYGLIDAVM 189
>gi|170078144|ref|YP_001734782.1| Clp protease [Synechococcus sp. PCC 7002]
gi|169885813|gb|ACA99526.1| Clp protease [Synechococcus sp. PCC 7002]
Length = 197
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 117/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+G I+ VA ++QL+ L D D DI +Y+N PGGS+Y+ +AI
Sbjct: 20 FDIYSRLLRERIVFLGTAIDDTVADSVVAQLLFLDAEDADKDIQLYINSPGGSVYAGMAI 79
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C+G+AAS A +L+GG KG R A+P++RIM++QP G+ G D++
Sbjct: 80 YDTMQQIRPNVVTICYGIAASMGAFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVDIE 139
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + K++ + A TGQP +KV + TERD ++SA EA ++GLID ++
Sbjct: 140 IQAKEILYIKDKLNTLIADHTGQPFDKVAEDTERDFYMSAEEACQYGLIDQVI 192
>gi|339007073|ref|ZP_08639648.1| ATP-dependent Clp protease proteolytic subunit 1 [Brevibacillus
laterosporus LMG 15441]
gi|338776282|gb|EGP35810.1| ATP-dependent Clp protease proteolytic subunit 1 [Brevibacillus
laterosporus LMG 15441]
Length = 195
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PIN VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTPINDQVANSVVAQLLFLQAEDPDKDISIYINSPGGSITAGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS + +L G KG RYA+PN+ IM++QP G+ G D++
Sbjct: 81 DTMQYIKPDVSTICVGLAASMGSFLLCAGAKGKRYALPNSEIMIHQPLGGAQGQASDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R ++ +YA TGQP E++ + T+RD FLSA A E+GLID ++
Sbjct: 141 AAKRIIKMREHLNGIYAERTGQPYERIAKDTDRDNFLSAQAAKEYGLIDEVI 192
>gi|160902469|ref|YP_001568050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
mobilis SJ95]
gi|160360113|gb|ABX31727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
mobilis SJ95]
Length = 205
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
MP V+ G D+ S L ++RI+F+G PIN VA I+QL+ L + D D DI +Y
Sbjct: 5 MPVVIETEGRYERAYDIYSRLLKDRIVFLGTPINDDVANVIIAQLLFLESQDPDKDIFLY 64
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+ S L IYD M ++KP + T+C G AAS A++LA G KG RY++P +RIM++
Sbjct: 65 INSPGGSVTSGLGIYDTMQYVKPDISTICIGQAASMGAVLLAAGAKGKRYSLPYSRIMIH 124
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G D++ E + + ++ + + TGQ +EK+++ TERD F++A EA+ +
Sbjct: 125 QPWGGAEGTAIDIQIHAREILRLKDDLNNILSKHTGQSLEKIEKDTERDFFMNAQEALNY 184
Query: 261 GLIDGILETE 270
GLID ++ T+
Sbjct: 185 GLIDKVITTK 194
>gi|239636619|ref|ZP_04677621.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus warneri L37603]
gi|239597974|gb|EEQ80469.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus warneri L37603]
Length = 196
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG RYA+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRYALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ A TGQ IEK+QQ T+RD FL+A EA +GL+D ++E E
Sbjct: 139 AANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEAKAYGLVDEVMEPE 193
>gi|421872665|ref|ZP_16304283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
laterosporus GI-9]
gi|372458638|emb|CCF13832.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
laterosporus GI-9]
Length = 193
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PIN VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTPINDQVANSVVAQLLFLQAEDPDKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS + +L G KG RYA+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGLAASMGSFLLCAGAKGKRYALPNSEIMIHQPLGGAQGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R ++ +YA TGQP E++ + T+RD FLSA A E+GLID ++
Sbjct: 139 AAKRIIKMREHLNGIYAERTGQPYERIAKDTDRDNFLSAQAAKEYGLIDEVI 190
>gi|251798425|ref|YP_003013156.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
gi|247546051|gb|ACT03070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
Length = 195
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 117/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+QL+ LA D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDDVANSVIAQLLFLAADDPEKDIHLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS +++L G KG R+A+PNA +M++QP G G D+K
Sbjct: 79 DTMQYIKPDVSTICMGMAASMGSLLLTAGAKGKRFALPNAEVMIHQPLGGVRGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ + ++ K++ +Y TGQP EK+ + T+RD F+SA +A+ +GLID ++ T
Sbjct: 139 HADWILKTKQKLNEIYVERTGQPYEKIDRDTDRDNFMSAEDALNYGLIDKVITT 192
>gi|284929120|ref|YP_003421642.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
UCYN-A]
gi|284809579|gb|ADB95284.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
UCYN-A]
Length = 214
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 65 FCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQR 120
F H Y K +N ++P V+ G D+ S L R RIIF+G P++ +A
Sbjct: 12 FSKESHQY---YAKMEN--IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQMANS 66
Query: 121 AISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 180
++QL+ L + D + DI +Y+N PGGS+Y+ LAIYD M I+P + T+CFG+AAS A +
Sbjct: 67 IVAQLLYLDSEDPEKDIQLYINSPGGSVYAGLAIYDTMKQIRPDIVTICFGLAASMGAFL 126
Query: 181 LAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIE 240
L+GG KG R A+P++RIM++QP G+ G D+ Q E + + +++ M + TG+P +
Sbjct: 127 LSGGTKGKRMALPSSRIMIHQPLGGAQGQAVDIAIQAQEILYIKKRLNNMLSEHTGKPFD 186
Query: 241 KVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ TERD F+S+ EA+E+GLID ++
Sbjct: 187 TIAADTERDFFMSSKEAVEYGLIDKVI 213
>gi|386715303|ref|YP_006181626.1| ATP-dependent Clp protease proteolytic subunit [Halobacillus
halophilus DSM 2266]
gi|384074859|emb|CCG46352.1| ATP-dependent Clp protease proteolytic subunit [Halobacillus
halophilus DSM 2266]
Length = 193
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ ++ ++QL+ LA D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSPIDDNISNSIVAQLLFLAADDPDKDISLYINSPGGSITSGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L GE G RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPNVSTICTGMAASMGAFLLNAGEPGKRYALPNSEVMIHQPLGGTQGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ R K++++ + TGQP E +++ T+RD F+SA EA+++GLID ++E
Sbjct: 139 HAKRIIKMREKLNKILSERTGQPYEVIERDTDRDNFMSAHEAVDYGLIDKVME 191
>gi|315650622|ref|ZP_07903682.1| ATP-dependent Clp protease proteolytic subunit [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315487119|gb|EFU77441.1| ATP-dependent Clp protease proteolytic subunit [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 193
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 121/174 (69%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L ++RIIF+G+ +N + A ++Q++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDINLYINSPGGSVVAGMAI 77
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++K V T+C G+AAS AA +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMAAFLLAGGTKGKRYALPNAEIMIHQPSGGAQGQATEIR 137
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +R K++++ A T QPIE +++ TERD ++SA EA+++G+ID ++E
Sbjct: 138 IAAEQILKTREKMNKILAENTNQPIEVIERDTERDNYMSAKEALDYGIIDKVIE 191
>gi|409993296|ref|ZP_11276442.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis str. Paraca]
gi|409935831|gb|EKN77349.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis str. Paraca]
Length = 237
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
DL S L R+RIIF+G PI+ VA +Q++ L + D + DI +Y+N PGGS+ + + I
Sbjct: 50 FDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQLYINSPGGSVTAGMGI 109
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C+G+AAS A +LA G G R ++P++RIM++QP G+ G D++
Sbjct: 110 YDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIMIHQPLGGAQGQAIDIE 169
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + +H ++ + A TGQPIE++ TERD F+SAAEA E+GLID ++
Sbjct: 170 IQAKEILYHKHTLNTLLAQHTGQPIERINADTERDFFMSAAEAQEYGLIDQVI 222
>gi|295677486|ref|YP_003606010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1002]
gi|295437329|gb|ADG16499.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1002]
Length = 215
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 119/189 (62%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISF 72
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARIMI 132
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ Q E + R +++ M A TG+ I+ + + T+RD F+SA EA E
Sbjct: 133 HQPSGGGQGTAADIEIQAKEVLYVRARLNAMMAERTGRTIDDIARDTDRDNFMSALEARE 192
Query: 260 FGLIDGILE 268
+GLID +LE
Sbjct: 193 YGLIDDVLE 201
>gi|291569895|dbj|BAI92167.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
platensis NIES-39]
Length = 236
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
DL S L R+RIIF+G PI+ VA +Q++ L + D + DI +Y+N PGGS+ + + I
Sbjct: 49 FDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQLYINSPGGSVTAGMGI 108
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C+G+AAS A +LA G G R ++P++RIM++QP G+ G D++
Sbjct: 109 YDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIMIHQPLGGAQGQAIDIE 168
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + +H ++ + A TGQPIE++ TERD F+SAAEA E+GLID ++
Sbjct: 169 IQAKEILYHKHTLNTLLAQHTGQPIERINADTERDFFMSAAEAQEYGLIDQVI 221
>gi|158321199|ref|YP_001513706.1| ATP-dependent Clp protease proteolytic subunit [Alkaliphilus
oremlandii OhILAs]
gi|167008645|sp|A8MIS8.1|CLPP_ALKOO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|158141398|gb|ABW19710.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
oremlandii OhILAs]
Length = 195
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 115/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKERIIFLSDEVNDATASLVVAQLLFLESEDPDKDIQLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +L G+KG R+A+PNA IM++QP G+ G ED++
Sbjct: 79 DTMNYIKPDVSTICIGMAASMGAFLLTAGQKGKRFALPNAEIMIHQPLGGTRGQAEDIRI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ R ++++ A TGQP+EKVQ+ T+RD F+ A EA +G+ID ++ T
Sbjct: 139 HTERILKMRETLNKIIAERTGQPLEKVQKDTDRDFFMEAEEARAYGIIDEVITT 192
>gi|406874142|gb|EKD24155.1| hypothetical protein ACD_81C00091G0003 [uncultured bacterium]
Length = 195
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 120/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R+RIIF+G I+ VA I+QL+ LA D DI +YLN PGGS+ + LAI
Sbjct: 19 DIYSRLLRDRIIFLGGIIDDNVANTVIAQLLFLAHEDPKKDIQIYLNSPGGSVTAGLAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A++LAGG+KG R+A+PN+ +ML+Q G G D++
Sbjct: 79 DTMNYIKPDVSTICVGIAASMGAVLLAGGKKGKRFALPNSEVMLHQVMGGYEGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ ++ K+++ A TGQP+ +V++ ++RD +LSAAEA E+GLID +++T
Sbjct: 139 NAKHILKTKEKLNQFLAKATGQPMNRVEKDSDRDFYLSAAEAKEYGLIDEVMKT 192
>gi|296284617|ref|ZP_06862615.1| ATP-dependent Clp protease proteolytic subunit [Citromicrobium
bathyomarinum JL354]
Length = 228
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 117/175 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+ P+ +A A++QL+ L + + I MY+N PGG + + +AI
Sbjct: 32 FDIFSRLLRERIVFLTGPVEDGMASLAVAQLLFLESENPSKPISMYINSPGGVVTAGMAI 91
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P++ TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 92 HDTMQYIQPRISTVCVGQAASMGSFLLAAGEPGMRIALPNARIMIHQPSGGAQGMASDIE 151
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R ++ +YA +TGQP+EK+++ +RD FL A EAM+FGL+D + E+
Sbjct: 152 IQAREILRIRKNMNELYAKYTGQPLEKIEEAMDRDTFLDAQEAMKFGLVDKVFES 206
>gi|397905705|ref|ZP_10506547.1| ATP-dependent Clp protease proteolytic subunit [Caloramator
australicus RC3]
gi|397161224|emb|CCJ33882.1| ATP-dependent Clp protease proteolytic subunit [Caloramator
australicus RC3]
Length = 196
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G IN A I+QL+ L + D D DI +Y+N PGG I + LAIY
Sbjct: 19 DIYSRLLKERIIFLGDEINDQTANLVIAQLLFLESEDPDKDIYLYINSPGGVISAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA++LA G KG R+A+PN+ IM++QP G+ G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMAAVLLAAGAKGKRFALPNSEIMIHQPLGGARGQATDIAI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +++ + + TGQPIE++++ T+RD F++A EA E+GLID ++
Sbjct: 139 HAEHILKLKKRLNEILSERTGQPIERIEKDTDRDNFMTALEAKEYGLIDDVI 190
>gi|42784300|ref|NP_981547.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 10987]
gi|402554765|ref|YP_006596036.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
FRI-35]
gi|67460499|sp|Q72XW9.1|CLPP2_BACC1 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|42740231|gb|AAS44155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus ATCC 10987]
gi|401795975|gb|AFQ09834.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
FRI-35]
Length = 193
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDIHLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A +A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKIF 190
>gi|376004076|ref|ZP_09781843.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
gi|375327546|emb|CCE17596.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
Length = 200
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
DL S L R+RIIF+G PI+ VA +Q++ L + D + DI +Y+N PGGS+ + + I
Sbjct: 13 FDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQLYINSPGGSVTAGMGI 72
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C+G+AAS A +LA G G R ++P++RIM++QP G+ G D++
Sbjct: 73 YDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIMIHQPLGGAQGQAIDIE 132
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + +H ++ + A TGQPIE++ TERD F+SAAEA E+GLID ++
Sbjct: 133 IQAKEILYHKHTLNTLLAQHTGQPIERINADTERDFFMSAAEAQEYGLIDNVI 185
>gi|326790230|ref|YP_004308051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
lentocellum DSM 5427]
gi|326540994|gb|ADZ82853.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
lentocellum DSM 5427]
Length = 193
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G +N++ A ++QL+ L D D DI+ Y+N PGGSI +AIY
Sbjct: 19 DIYSRLLKDRIIILGDEVNNVTANLIVAQLLFLEAEDPDKDIMFYINSPGGSITDGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +LAGG KG R+A+PNA +M++QP G+ G D++
Sbjct: 79 DTMQYIKCDVSTICMGMAASMGAFLLAGGTKGKRFALPNAEVMIHQPLGGAKGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ ++ +++RM + FTGQPIE++ ERD + +A EA E+GLID I+ ++
Sbjct: 139 TAQHIIKTKERMNRMLSEFTGQPIERINNDVERDNWKTAEEAKEYGLIDDIITSK 193
>gi|381211603|ref|ZP_09918674.1| ATP-dependent Clp protease proteolytic subunit [Lentibacillus sp.
Grbi]
Length = 197
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSGIDDNVANSIVAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPNVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGTQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + K++++ + TGQP+E V++ T+RD F SA E++E+GLID ILE
Sbjct: 139 HARRIIQMKEKMNKILSERTGQPLEVVERDTDRDNFKSAEESVEYGLIDKILE 191
>gi|242373003|ref|ZP_04818577.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis M23864:W1]
gi|242349329|gb|EES40930.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
epidermidis M23864:W1]
Length = 195
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ A TGQ IEK+QQ T+RD FL+A EA +GLID ++E E
Sbjct: 139 AANHILKTREKLNRILAERTGQSIEKIQQDTDRDNFLTAEEAKSYGLIDEVMEPE 193
>gi|338811972|ref|ZP_08624171.1| ATP-dependent Clp protease proteolytic subunit [Acetonema longum
DSM 6540]
gi|337275941|gb|EGO64379.1| ATP-dependent Clp protease proteolytic subunit [Acetonema longum
DSM 6540]
Length = 202
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+FIG PI+ +A I+QL+ L + D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIVFIGGPIDDTMANLVIAQLLFLESEDPEKDIHLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AAI+L G KG RYA+P AR+M++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICLGLAASMAAILLTAGAKGKRYALPYARVMIHQPHGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R + A +GQP+EKVQ+ ERD F+S EA E+GLID +L
Sbjct: 139 HAREILRLREIGADILARHSGQPVEKVQRDLERDFFMSGQEAKEYGLIDSVL 190
>gi|402312968|ref|ZP_10831891.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lachnospiraceae bacterium ICM7]
gi|404484025|ref|ZP_11019239.1| ATP-dependent Clp protease proteolytic subunit [Clostridiales
bacterium OBRC5-5]
gi|400367544|gb|EJP20560.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lachnospiraceae bacterium ICM7]
gi|404342705|gb|EJZ69075.1| ATP-dependent Clp protease proteolytic subunit [Clostridiales
bacterium OBRC5-5]
Length = 193
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 119/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L ++RIIF+G+ +N + A ++Q++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDINLYINSPGGSVVAGMAI 77
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++K V T+C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G D+K
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMGAFLLAGGTKGKRYALPNAEIMIHQPSGGAQGQASDIK 137
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + ++ K++++ A T QPIE +++ TERD ++SA EA+ +G+ID ++E
Sbjct: 138 IVAEQILKTKQKLNKILAENTNQPIEVIERDTERDNYMSAEEALSYGIIDKVIE 191
>gi|346310669|ref|ZP_08852683.1| Clp protease [Collinsella tanakaei YIT 12063]
gi|345897303|gb|EGX67226.1| Clp protease [Collinsella tanakaei YIT 12063]
Length = 207
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 126/188 (67%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L +RIIF+G+ INS+ A I+QL+ L + D + DI +
Sbjct: 9 LVPYVIEQTPRGERSYDIYSRLLNDRIIFLGEEINSVTANLVIAQLLHLESQDAEKDISL 68
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG +YS LAI D M++IKP+V T+C G+AAS AA++LA G KG R+ +PN+ +M+
Sbjct: 69 YINSPGGEVYSGLAILDTMNYIKPQVSTICVGMAASMAAVLLASGAKGKRFCLPNSIVMI 128
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ E +R ++++ + TGQP EKVQ TERD ++ A A+E
Sbjct: 129 HQPSGGAQGQQTEIEIAAREIRETRATLNKILSDATGQPFEKVQADTERDNYMRAQAALE 188
Query: 260 FGLIDGIL 267
+GL+D I+
Sbjct: 189 YGLVDRIV 196
>gi|423018592|ref|ZP_17009313.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans AXX-A]
gi|338778354|gb|EGP42829.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans AXX-A]
Length = 217
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 118/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++R+ A TGQ IE++ TERD F+SA +A+ +GL+D ++ +
Sbjct: 160 QAREILDLRERLNRILADNTGQSIERIALDTERDNFMSAEDAVSYGLVDKVMTS 213
>gi|427734237|ref|YP_007053781.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rivularia sp.
PCC 7116]
gi|427369278|gb|AFY53234.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rivularia sp.
PCC 7116]
Length = 234
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 128/200 (64%), Gaps = 7/200 (3%)
Query: 75 ISGKNDNPP---LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVT 127
I ++D+P ++P V+ G D+ S L R RIIF+G PI+ VA ++QL+
Sbjct: 19 IYSQSDSPSATSMLPTVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANSLVAQLLF 78
Query: 128 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKG 187
L D + DI +Y+N PGGS+ + +AIYD + I+P V T+CFG+AAS A++L G G
Sbjct: 79 LDADDSEKDIQIYVNSPGGSVTAGMAIYDTIQQIRPDVVTICFGLAASMGALLLTAGTAG 138
Query: 188 MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTE 247
R ++P++RIM++QP G+ G D++ Q E + + K++ + A+ TGQP+EK++ TE
Sbjct: 139 KRMSLPDSRIMIHQPLGGAQGQAVDIEIQAKEILYHKSKLNEILASHTGQPLEKIEADTE 198
Query: 248 RDRFLSAAEAMEFGLIDGIL 267
RD F+SA EA +GLID ++
Sbjct: 199 RDFFMSAEEAKNYGLIDQVI 218
>gi|239828281|ref|YP_002950905.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
WCH70]
gi|259585956|sp|C5D7M9.1|CLPP_GEOSW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|239808574|gb|ACS25639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. WCH70]
Length = 196
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ A TGQP+E +++ T+RD F++A +A E+G+ID +L
Sbjct: 139 AAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKAQEYGIIDRVL 190
>gi|374849800|dbj|BAL52805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [uncultured
prokaryote]
Length = 201
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+PI+ VA I++L+ L D D DI MY+N PGG + + LAIY
Sbjct: 25 DIYSRLLKDRIIFLGEPIDDQVANLVIAELLFLEKEDPDKDIDMYINTPGGIVSAGLAIY 84
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G AAS A++LAGG G RYA+P+ARIM++Q +G G D++
Sbjct: 85 DTMQAIKPDVATICVGQAASMGAVLLAGGTPGKRYALPHARIMIHQVHAGFQGTAIDIEI 144
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + ++ + TGQP+E+++Q T RD F+SA EA+E+G+ID IL+
Sbjct: 145 QAREVLRYKDILNNILHKHTGQPLERIEQDTARDYFMSAKEALEYGIIDHILD 197
>gi|218779308|ref|YP_002430626.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfatibacillum alkenivorans AK-01]
gi|259585946|sp|B8FA62.1|CLPP_DESAA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|218760692|gb|ACL03158.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfatibacillum alkenivorans AK-01]
Length = 201
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+QL+ L + D + DI Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDINFYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP++ TVC G AAS A++LA G G RY++PNARI+++QP G G D+
Sbjct: 79 DTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARILIHQPMGGFQGQASDIAI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + ++ + A+ TG+P+++VQQ T+RD F+S EA E+GLID ++
Sbjct: 139 QAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEAKEYGLIDHVI 190
>gi|419718353|ref|ZP_14245675.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lachnoanaerobaculum saburreum F0468]
gi|383305484|gb|EIC96847.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lachnoanaerobaculum saburreum F0468]
Length = 193
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 120/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L ++RIIF+G+ +N + A ++Q++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDINLYINSPGGSVVAGMAI 77
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++K V T+C G+AAS AA +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMAAFLLAGGTKGKRYALPNAEIMIHQPSGGAQGQATEIR 137
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +R K++++ A T QPIE +++ TERD ++SA EA+ +G+ID ++E
Sbjct: 138 IAAEQILKTREKMNKILAENTNQPIEVIERDTERDNYMSAKEALSYGIIDKVIE 191
>gi|355676848|ref|ZP_09060344.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
citroniae WAL-17108]
gi|354813437|gb|EHE98048.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
citroniae WAL-17108]
Length = 193
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 119/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +LAGG KG R+A+PN+ IM++QP G+ G ++K
Sbjct: 79 DTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRFALPNSEIMIHQPSGGAKGQATEIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ +R K++ + AA TG+PIE +++ TERD ++SAAEA E+GLID I+E
Sbjct: 139 VAENILKTRKKLNDILAANTGRPIEVIERDTERDNYMSAAEAKEYGLIDEIIE 191
>gi|427724133|ref|YP_007071410.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7376]
gi|427355853|gb|AFY38576.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7376]
Length = 199
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 126/189 (66%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ +N +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIESSGRGERAFDIYSRLLRERIVFLGQQVNDEIANLIVAQLLFLEADDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ ++P V T+C G+AAS A +L+ GEKG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGMGIFDTMNQVRPDVCTICIGLAASMGAFLLSAGEKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K+++ A TGQP++K++ T+RD F+SAAEAM+
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGKLNQHLADHTGQPLDKIEVDTDRDFFMSAAEAMD 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|323527161|ref|YP_004229314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1001]
gi|323384163|gb|ADX56254.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1001]
Length = 227
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 119/190 (62%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISF 72
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRGKRYALPNARIMI 132
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP GS G D+ Q E + R +++ M A TG+ +E++ + T+RD F+SA A
Sbjct: 133 HQPSGGSQGTAADIDIQAKEVLYLRERLNAMMAERTGRSVEEIARDTDRDNFMSALAAKT 192
Query: 260 FGLIDGILET 269
+GL+D +LET
Sbjct: 193 YGLVDEVLET 202
>gi|254446451|ref|ZP_05059927.1| Clp protease [Verrucomicrobiae bacterium DG1235]
gi|198260759|gb|EDY85067.1| Clp protease [Verrucomicrobiae bacterium DG1235]
Length = 182
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 119/172 (69%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ S L ++RI+FIG PIN +A I+QL+ L D DI +Y+N PGGS+ S +AI
Sbjct: 1 MDIYSRLLKDRIVFIGTPINDEIANAIIAQLLFLQMEDPKKDINVYINSPGGSVTSGMAI 60
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M+++ +V T C G+AAS I+LAGG KG RYA+PN+R+M++QP G+GG D+
Sbjct: 61 YDTMNFLSCEVSTWCIGMAASMGTILLAGGTKGKRYALPNSRVMIHQPSGGAGGQASDIS 120
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGI 266
Q E + R ++++ A TGQ +E++Q+ ++RD ++++ EA+E+G+ID +
Sbjct: 121 IQAKEIIRWRETLNKVLAEKTGQSVERIQKDSDRDYWMTSQEALEYGVIDKV 172
>gi|114567171|ref|YP_754325.1| ATP-dependent Clp protease proteolytic subunit [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|122317850|sp|Q0AWF0.1|CLPP_SYNWW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|114338106|gb|ABI68954.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 200
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + +I+P V T+C G+AAS A +LA G+KG RYA+PNA IM++QP G+ G D++
Sbjct: 80 DTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++++ A TGQP+E++Q+ T+RD F++A EA E+G+ID ++
Sbjct: 140 HARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVI 191
>gi|330814219|ref|YP_004358458.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Pelagibacter sp. IMCC9063]
gi|327487314|gb|AEA81719.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Pelagibacter sp. IMCC9063]
Length = 204
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L + RIIF+ PINS V+ +QL+ L + + +I M
Sbjct: 12 LVPMVVEQTPRGERAYDIYSRLLKERIIFLVGPINSQVSSLISAQLLFLESENNSKEIFM 71
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + LAIYD M +IKP V T+C G A S + +LA GEKG R ++PN+R+M+
Sbjct: 72 YINSPGGIVTDGLAIYDTMQYIKPAVATLCIGQACSMGSFLLAAGEKGQRMSLPNSRVMV 131
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP +G G D++ NE + ++ K++ +Y+ TGQ +EK+++ ERD+F+SA EA
Sbjct: 132 HQPSAGFQGQATDIEIHANEIMQTKKKLNEIYSKHTGQSVEKIKEALERDKFMSAEEAKA 191
Query: 260 FGLIDGILE 268
FGLID ++E
Sbjct: 192 FGLIDKVVE 200
>gi|229916596|ref|YP_002885242.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Exiguobacterium sp. AT1b]
gi|229468025|gb|ACQ69797.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Exiguobacterium sp. AT1b]
Length = 191
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RII +G I+ VA ++QL+ LA D + DI +
Sbjct: 2 LIPTVIEQTGRGERAYDIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLAAEDPEKDISL 61
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI + +AIYD M++IKP V T+C G+AAS A +L GEKG R+A+PNA IM+
Sbjct: 62 YINSPGGSITAGMAIYDTMNFIKPNVSTICIGMAASMGAFLLQAGEKGKRFALPNAEIMI 121
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+K + R K++++ A TGQP+E +++ TERD F++A +A +
Sbjct: 122 HQPLGGTQGQASDIKIHAERIIKMREKLNQIMAENTGQPLEVIERDTERDYFMAADQAKD 181
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 182 YGLIDKVM 189
>gi|225848210|ref|YP_002728373.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644423|gb|ACN99473.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 202
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RII +G PI+ VA ++QL+ L D + DI M
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHVANLIVAQLLFLEAEDPEKDIYM 67
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + AIYD M++IKP V T+C G AAS A +L+ G KG RY++PNARIM+
Sbjct: 68 YINSPGGVVTAGFAIYDTMNYIKPDVVTICIGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + + ++ A TGQPIEK++ TERD F+SA EA E
Sbjct: 128 HQPLGGFQGQATDIEIHAREILRLKRMLNEYLAKHTGQPIEKIEADTERDYFMSAEEAKE 187
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 188 YGLIDKVI 195
>gi|407714558|ref|YP_006835123.1| ATP-dependent Clp protease, protease subunit [Burkholderia
phenoliruptrix BR3459a]
gi|407236742|gb|AFT86941.1| ATP-dependent Clp protease, protease subunit [Burkholderia
phenoliruptrix BR3459a]
Length = 214
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 118/189 (62%), Gaps = 4/189 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
MP V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI Y
Sbjct: 1 MPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISFY 60
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM++
Sbjct: 61 INSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRGKRYALPNARIMIH 120
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP GS G D+ Q E + R +++ M A TG+ +E++ + T+RD F+SA A +
Sbjct: 121 QPSGGSQGTAADIDIQAKEVLYLRERLNAMMAERTGRSVEEIARDTDRDNFMSAFAAKTY 180
Query: 261 GLIDGILET 269
GL+D +LET
Sbjct: 181 GLVDEVLET 189
>gi|402814642|ref|ZP_10864236.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
alvei DSM 29]
gi|402508489|gb|EJW19010.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
alvei DSM 29]
Length = 193
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 118/175 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+QL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTEVNDLVANSIIAQLLFLAADDPEKDIHLYINSPGGSISAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ + R ++++ A TGQP+E+V++ T+RD F+SA EA ++GL+D +L E
Sbjct: 139 RARRILKMRDNLNKILAERTGQPLERVERDTDRDYFMSAQEAFDYGLVDKVLGKE 193
>gi|261404070|ref|YP_003240311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. Y412MC10]
gi|329927993|ref|ZP_08281997.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF5]
gi|261280533|gb|ACX62504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. Y412MC10]
gi|328938097|gb|EGG34494.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF5]
Length = 198
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+Q++ L+ D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG RY +PN+ IM++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ + R K++R+ + TGQP+E++++ T+RD F++A EA E+GLID +LE
Sbjct: 139 RARRILKMRDKLNRILSERTGQPLERIEKDTDRDYFMTADEAKEYGLIDQVLEN 192
>gi|427417857|ref|ZP_18908040.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7375]
gi|425760570|gb|EKV01423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7375]
Length = 200
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 125/188 (66%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G ++ +A ++QL+ L + D + D+ +
Sbjct: 1 MLPVVLEQSGRGERAFDIYSRLLRERIVFLGSGVDDTLADSIVAQLLYLDSEDPEKDVQI 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI + +AIYD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM+
Sbjct: 61 YINSPGGSITAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMALPSSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A TGQP++++ + TERD F+SAAEA +
Sbjct: 121 HQPLGGAQGQAVDIEIQAREILYLKQRLNELLAGHTGQPLDRIAEDTERDFFMSAAEAAD 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDTVI 188
>gi|357145775|ref|XP_003573761.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like isoform 1 [Brachypodium distachyon]
gi|357145778|ref|XP_003573762.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 294
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 121/182 (66%), Gaps = 2/182 (1%)
Query: 91 PGGPL--DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI 148
PGG D+ +L R RIIF+G I +A +SQL+ L +D ++DI +++N PGGS+
Sbjct: 74 PGGGASGDVMGLLLRERIIFLGNEIEDFLADAVVSQLLLLDAMDSESDIRLFVNSPGGSL 133
Query: 149 YSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG 208
+ +AIYD M I+ V T+ G+A S A+IIL GG KG R+AMPN RIM++QP G+ G
Sbjct: 134 SATMAIYDVMQLIRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMMHQPVGGASG 193
Query: 209 HVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
DV+ Q E + S+ + R+ + FTG+ +E+V++ +RDR++ EA+++GLIDG+++
Sbjct: 194 QALDVEVQAKEILTSKRNVIRLISGFTGRTLEQVEKDIDRDRYMGPHEAVDYGLIDGVID 253
Query: 269 TE 270
+
Sbjct: 254 GD 255
>gi|403745256|ref|ZP_10954194.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus hesperidum URH17-3-68]
gi|403121484|gb|EJY55777.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus hesperidum URH17-3-68]
Length = 185
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++QL+ LA D D DI MY+N PGGS+ + LAIY
Sbjct: 12 DIYSRLLKDRIIFLGTAIDDDVANAVVAQLLFLAADDPDKDIQMYINSPGGSVSAGLAIY 71
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS A++L G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 72 DTMQHIKPDVSTMCVGMAASMGAVLLTAGAKGKRFALPNSEVMIHQPLGGARGQASDIEI 131
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R +++++ A +GQP+E+V Q T+RD F+SA EA +GLID ++
Sbjct: 132 HARHILKTRERLNKILAERSGQPLERVAQDTDRDNFMSAEEAKAYGLIDEVI 183
>gi|319941575|ref|ZP_08015901.1| ATP-dependent Clp protease proteolytic subunit [Sutterella
wadsworthensis 3_1_45B]
gi|319804945|gb|EFW01787.1| ATP-dependent Clp protease proteolytic subunit [Sutterella
wadsworthensis 3_1_45B]
Length = 196
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 126/188 (67%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R+RIIF+ +N A ++QL+ L + D D DI +
Sbjct: 3 LVPIVVESSGRSERSFDIYSRLLRDRIIFLTTEVNDQTASLIVAQLLFLESEDPDKDISL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++I+D M +I+PKV T+C G+AAS A +LA GEKG RYA+P++RIM+
Sbjct: 63 YINSPGGSVSAGMSIFDTMRFIRPKVNTICLGMAASMGAFLLAAGEKGKRYALPHSRIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G DV+ + + ++ + +++ + A FTG+ +++ + T+RD F+SA EA+E
Sbjct: 123 HQPLGGAEGQASDVEIRARQLLLIKRQMNELMAGFTGRSYDELVRDTDRDNFMSAQEALE 182
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 183 YGLIDRVL 190
>gi|186681335|ref|YP_001864531.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
punctiforme PCC 73102]
gi|186463787|gb|ACC79588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
punctiforme PCC 73102]
Length = 232
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 129/209 (61%), Gaps = 4/209 (1%)
Query: 66 CSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRA 121
S + I S N ++P V+ G D+ S L R RIIF+G PI+ VA
Sbjct: 11 ISNQSRININSQLNSPSNIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANSI 70
Query: 122 ISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIIL 181
++QL+ L + D + DI MY+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L
Sbjct: 71 VAQLLFLDSEDSEKDIQMYVNSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLL 130
Query: 182 AGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEK 241
G G R ++P++RIM++QP G+ G D++ Q E + + K++++ + TGQP+E+
Sbjct: 131 TAGAAGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYVKAKLNQLMSHHTGQPLER 190
Query: 242 VQQYTERDRFLSAAEAMEFGLIDGILETE 270
++ TERD F+SA EA +GLID ++ +
Sbjct: 191 IEADTERDFFMSAEEAKNYGLIDQVISRQ 219
>gi|60416366|sp|Q8RC25.2|CLPP_THETN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 195
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G IN A I+Q++ L D D DI +Y+N PGGSI + LAIY
Sbjct: 19 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQP+EK++ ERD F++A EA +G+ID IL
Sbjct: 139 HAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAEEAKTYGIIDDIL 190
>gi|320161285|ref|YP_004174509.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
thermophila UNI-1]
gi|319995138|dbj|BAJ63909.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
thermophila UNI-1]
Length = 218
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 123/183 (67%), Gaps = 2/183 (1%)
Query: 86 PAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG 145
PAV + G DL+++L RNRII++G I+ VA ++QL+ L+ D +A I MY+N PG
Sbjct: 28 PAVTS--GISDLNALLLRNRIIYLGTAIDDKVANNIVAQLLFLSNEDREAPIQMYINSPG 85
Query: 146 GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 205
G +Y+ LAIYD M I + T+ GV AS ++LA G KGMRYA+PNA I ++QP G
Sbjct: 86 GQVYAGLAIYDAMQIIPNPISTLAVGVTASFGTVLLAAGTKGMRYALPNATIHMHQPLGG 145
Query: 206 SGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDG 265
+ G +++ Q E + + +++++ AA TGQ +E +Q+ TERDR++ A +AME+GL+D
Sbjct: 146 AQGQATEIEIQAKEILRLKARLNQILAAHTGQTVETIQRDTERDRYMDAHQAMEYGLVDH 205
Query: 266 ILE 268
I+E
Sbjct: 206 IME 208
>gi|225850859|ref|YP_002731093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
marina EX-H1]
gi|225644930|gb|ACO03116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
marina EX-H1]
Length = 202
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RII +G PI+ +A I+QL+ L + D + DI M
Sbjct: 12 LVPIVIEQTPRGERAYDIYSRLLKDRIIMLGFPIDDHIANLIIAQLLFLESEDPEKDIYM 71
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + S LAIYD M +IKP V T+C G AAS A +L+ G KG RYA+P++RIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMRYIKPDVVTICMGQAASMGAFLLSAGAKGKRYALPSSRIMI 131
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + + ++ A TGQP+EK+++ TERD F+SA +A+E
Sbjct: 132 HQPLGGFQGQATDIEIHAKEILRLKKYLNERLAEHTGQPLEKIERDTERDFFMSAHDAVE 191
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 192 YGLIDKVIE 200
>gi|119774361|ref|YP_927101.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
amazonensis SB2B]
gi|171704645|sp|A1S4X5.1|CLPP_SHEAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119766861|gb|ABL99431.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
amazonensis SB2B]
Length = 202
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D +I +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESENPDKEIYLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV TVC G A S A +LAGGEKGMR+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +HK+++M + TGQP+E +++ T+RD F+SA +A+E+GLID +L
Sbjct: 148 HAQEILGIKHKLNQMLSHHTGQPMEVIERDTDRDNFMSATQAVEYGLIDSVL 199
>gi|193212075|ref|YP_001998028.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobaculum
parvum NCIB 8327]
gi|193085552|gb|ACF10828.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobaculum
parvum NCIB 8327]
Length = 225
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 130/212 (61%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG +N L+P V+ G D+ S L R RIIF+G PI+
Sbjct: 5 NFGFNHHAKKLYSGAIENSINNQLVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G G R ++P++RIM++QP G+ G D+ Q E RH ++ + A TG
Sbjct: 125 GAFLLASGTAGKRASLPHSRIMIHQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q ++ +++ +ERDR+++A EA E+GLID I E
Sbjct: 185 QNVKTIREDSERDRWMNATEAKEYGLIDQIFE 216
>gi|449456777|ref|XP_004146125.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like [Cucumis sativus]
Length = 293
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 117/188 (62%)
Query: 83 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
P P G D +L R RI+F+G I+ VA ISQL+ L D DI +++N
Sbjct: 67 PQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFIN 126
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
GGS+ S +AIYD + ++ V T+ G+AAS A+IIL GG KG R AMPNARIM++QP
Sbjct: 127 SAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQP 186
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
G+ G DV+ Q E + ++ + R+ + FTG P EKVQ+ +RDR++S EA+E+G
Sbjct: 187 LGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGF 246
Query: 263 IDGILETE 270
IDG+++ +
Sbjct: 247 IDGVIDQD 254
>gi|304440714|ref|ZP_07400598.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304370901|gb|EFM24523.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 194
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAV--MTPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V MT G D+ S L + RIIFI IN++ A ++QL+ L + D + DI +
Sbjct: 3 LVPTVIEMTNRGERAYDIYSRLLKERIIFISGEINNVTADLVVAQLLFLESEDPNKDIQI 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + AI+D M++IKP V T+C G+AAS A +LA G+KG R+A+PN+ IM+
Sbjct: 63 YINSPGGSVSAGFAIFDTMNYIKPDVSTICIGMAASMGAFLLAAGKKGKRFALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+ + + R +I+++ A TGQP+EK++ T+RD FLSA EA E
Sbjct: 123 HQPLGGAQGQASDIMIHAEKIIEIRQRINKILAEETGQPLEKIEHDTDRDYFLSADEAKE 182
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 183 YGLIDNVI 190
>gi|78183646|ref|YP_376080.1| peptidase S14, ClpP [Synechococcus sp. CC9902]
gi|124013821|sp|Q3B0U1.1|CLPP2_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|78167940|gb|ABB25037.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CC9902]
Length = 207
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 6 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 65
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 66 QIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 125
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP++K+ + T+RD FLS AEA
Sbjct: 126 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEA 185
Query: 258 MEFGLIDGILET 269
+E+GLID ++++
Sbjct: 186 VEYGLIDRVVDS 197
>gi|315644534|ref|ZP_07897666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
vortex V453]
gi|315280041|gb|EFU43338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
vortex V453]
Length = 198
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+Q++ L+ D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG RY +PN+ IM++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ + R K++R+ + TGQP+E++++ T+RD F++A EA E+GLID +LE
Sbjct: 139 RARRILKMRDKLNRILSDRTGQPLERIEKDTDRDYFMTADEAKEYGLIDQVLEN 192
>gi|188585728|ref|YP_001917273.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|259585960|sp|B2A158.1|CLPP_NATTJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|179350415|gb|ACB84685.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 197
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 120/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG IN +A I+Q++ L + D D DI +Y+N PGG +++ LAIY
Sbjct: 19 DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+ V T+C G+AAS A++LA G +G R+ +PN+RIML+QP G+ G DV+
Sbjct: 79 DTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++ +++++ A TGQP+E++ + T+RD F+S+ EA ++G+ID +L+
Sbjct: 139 HAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVIDDVLK 191
>gi|408417896|ref|YP_006759310.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacula
toluolica Tol2]
gi|405105109|emb|CCK78606.1| ClpP: ATP-dependent Clp protease, proteolytic subunit
[Desulfobacula toluolica Tol2]
Length = 207
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ D+ S L ++RIIFIG I+ +A ++Q + L + D + DI
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFIGSAIDDEIANLIVAQFLFLESEDPEKDIS 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
Y+N PGG + + +AIYD M +IKP V TVC G AAS A++L G KG R+A+PN+RIM
Sbjct: 62 FYINSPGGVVTAGMAIYDTMQYIKPDVATVCIGQAASMGALLLTAGTKGKRFALPNSRIM 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D+K Q NE + + ++ + + TGQ IEKV TERD F+SA EAM
Sbjct: 122 IHQPLGGTQGQATDIKIQANEILRMKDILNEILSTHTGQDIEKVSADTERDFFMSATEAM 181
Query: 259 EFGLIDGIL 267
++G++D ++
Sbjct: 182 KYGIVDKVV 190
>gi|332528101|ref|ZP_08404132.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rubrivivax
benzoatilyticus JA2]
gi|332112672|gb|EGJ12465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rubrivivax
benzoatilyticus JA2]
Length = 202
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 118/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RI+F+ P+N VA +QL+ L + + D DI +Y+N PGGS+ + L+I+
Sbjct: 27 DIYSRLLRERIVFLVGPVNDQVANLVCAQLLFLESENPDKDISLYINSPGGSVSAGLSIF 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP+V T+C G+AAS + +L G KG R+A+PN+R+M++QP G+ G D++
Sbjct: 87 DTMNFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALPNSRVMIHQPSGGAQGQASDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + +R +++R+YA TGQ IEK+ ERD +LS EA ++GLID +LE
Sbjct: 147 QAREIIKTREQLNRIYAERTGQSIEKIAADMERDMWLSPGEAKDYGLIDQVLE 199
>gi|20807119|ref|NP_622290.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
tengcongensis MB4]
gi|20515613|gb|AAM23894.1| Protease subunit of ATP-dependent Clp proteases [Thermoanaerobacter
tengcongensis MB4]
Length = 198
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G IN A I+Q++ L D D DI +Y+N PGGSI + LAIY
Sbjct: 22 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPGGSITAGLAIY 81
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 82 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQGQATDIKI 141
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQP+EK++ ERD F++A EA +G+ID IL
Sbjct: 142 HAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAEEAKTYGIIDDIL 193
>gi|58038575|ref|YP_190539.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
oxydans 621H]
gi|67460438|sp|Q5FUR3.1|CLPP1_GLUOX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|58000989|gb|AAW59883.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
oxydans 621H]
Length = 215
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 116/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ P+ V+ +QL+ L +++ +I Y+N PGG + + LAI
Sbjct: 31 FDIFSRLLQERIIFLTGPVYDQVSSLICAQLLYLESVNPTKEISFYINSPGGVVSAGLAI 90
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +I+ V TVC G AAS +++LAGGEKG RYA+PNAR+M++QP G+ G D++
Sbjct: 91 YDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGHRYALPNARVMVHQPSGGAQGQASDIE 150
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E +I R +++ +Y TGQ +E+++Q ERD +LSA EA EFGLID ++E
Sbjct: 151 IQAREILIIRQRLNEIYREHTGQTLEQIEQKLERDSYLSANEAREFGLIDKVVE 204
>gi|358067641|ref|ZP_09154119.1| ATP-dependent Clp protease proteolytic subunit [Johnsonella ignava
ATCC 51276]
gi|356694294|gb|EHI55957.1| ATP-dependent Clp protease proteolytic subunit [Johnsonella ignava
ATCC 51276]
Length = 193
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 118/173 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L ++RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ S +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTAGLVVAQLLFLESEDPSKDINLYINSPGGSVVSGMAI 77
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++K V T+C G+AAS A +LAGG KG RYA+PN+ IM++QP G+ G +++
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMGAFLLAGGAKGKRYALPNSEIMIHQPSGGARGQATEIQ 137
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + R +++ M AA TGQPIE +++ TERD ++SA EAM +G++D ++
Sbjct: 138 IVAEQILKDRKRLNEMLAANTGQPIEVIERDTERDYYMSAEEAMSYGIVDKVI 190
>gi|70727122|ref|YP_254036.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
haemolyticus JCSC1435]
gi|124013829|sp|Q4L4J5.1|CLPP_STAHJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|68447846|dbj|BAE05430.1| clpP [Staphylococcus haemolyticus JCSC1435]
Length = 195
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++++ A TGQ IEK+Q+ T+RD FL+A EA E+GLID +++ E
Sbjct: 139 AANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEAKEYGLIDNVMQPE 193
>gi|320103932|ref|YP_004179523.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
pallida ATCC 43644]
gi|319751214|gb|ADV62974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
pallida ATCC 43644]
Length = 252
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 118/173 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+ LS +L NRIIF+ PI++++A I Q + L + I Y+N PGGS+YS LA+
Sbjct: 38 MTLSDLLLENRIIFLEGPIDNVIANHLIKQFLYLQFENRTQGISFYINSPGGSVYSTLAV 97
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++ + T C G+AAS AA++LAGG KG R+++P+++IM++QP GG V D++
Sbjct: 98 YDTMQFVNCPIATYCIGMAASGAAVLLAGGTKGKRFSLPHSKIMIHQPSGYVGGQVSDIE 157
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q +E + ++ I+ + A TGQP E++ + TERDR+L+AAEA E+GL+D +L
Sbjct: 158 IQADEILKNKKLINEILAKHTGQPYERIAKDTERDRYLTAAEAKEYGLVDEVL 210
>gi|374604920|ref|ZP_09677867.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
dendritiformis C454]
gi|374389443|gb|EHQ60818.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
dendritiformis C454]
Length = 192
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+Q++ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSQVNDVVANSIIAQMLFLQADDPDKDIHLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAEGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R K++ + A TGQP++++++ T+RD F+SA EA+E+GL+D +L
Sbjct: 139 RARRILKMRDKLNHILAERTGQPLDRIERDTDRDYFMSAEEALEYGLVDKVLH 191
>gi|427701944|ref|YP_007045166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium
gracile PCC 6307]
gi|427345112|gb|AFY27825.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium
gracile PCC 6307]
Length = 196
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ + A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTAESANRVVAQLLFLEAEDPEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YVNSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLSHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + K++R A+ TGQ +E++Q T+RD F+S AEAM
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKDKLNRELASRTGQDLERIQIDTDRDFFMSPAEAMA 180
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 181 YGLIDKVIE 189
>gi|423394662|ref|ZP_17371863.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-1]
gi|423405531|ref|ZP_17382680.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-3]
gi|401657444|gb|EJS74954.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-1]
gi|401661147|gb|EJS78617.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-3]
Length = 193
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQPIE +Q+ T+RD F++A +A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPIEVLQRDTDRDNFMTAEKALEYGLIDKIF 190
>gi|392955511|ref|ZP_10321042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
macauensis ZFHKF-1]
gi|391878438|gb|EIT87027.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
macauensis ZFHKF-1]
Length = 197
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLAAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +L+ GEKG RYA+PNA +M++QP G+ G D++
Sbjct: 79 DTMNFIKPNVSTICIGMAASMGAFLLSAGEKGKRYALPNAEVMIHQPLGGTQGQAADIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R +++++ A TGQP+E +++ T+RD F+ AA+A+++GL+D ++
Sbjct: 139 HARRIIQMREQLNKILAENTGQPLEVIERDTDRDNFMLAADAVKYGLVDRVM 190
>gi|251772219|gb|EES52789.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Leptospirillum ferrodiazotrophum]
Length = 201
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 114/175 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R+RII +G PI+ VA I+Q++ L + D DI +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLRDRIIILGTPIDDTVANLVIAQMLFLESEDSSKDINLYINSPGGIVTAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + +IKP V T+C G AAS A +L+ G KG RYA+PNARIM++QP G G D++
Sbjct: 78 DTIKFIKPDVSTICIGQAASMGAFLLSAGAKGKRYALPNARIMIHQPMGGFQGQATDIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + + ++RM + GQP+EKV Q T+RD F+SA EA ++GLID ++ +
Sbjct: 138 HAREILKLKADLNRMMSEHCGQPVEKVAQDTDRDYFMSAKEAKDYGLIDSVITSH 192
>gi|119510658|ref|ZP_01629787.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
gi|119464709|gb|EAW45617.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
Length = 210
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 7 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDTVANSIVAQLLFLDAEDSEKDIQI 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD M I+P V T+CFG+AAS A +LA G G R ++P++RIM+
Sbjct: 67 YINSPGGSVYAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLAAGSAGKRMSLPDSRIMI 126
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++++ TGQP+E+++ TERD F+SA EA
Sbjct: 127 HQPLGGAQGQAIDIEIQAREILYVKAKLNQLLGHHTGQPLERLEADTERDFFMSAEEAKN 186
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 187 YGLIDQVI 194
>gi|407795375|ref|ZP_11142334.1| ATP-dependent Clp protease proteolytic subunit [Salimicrobium sp.
MJ3]
gi|407020260|gb|EKE32973.1| ATP-dependent Clp protease proteolytic subunit [Salimicrobium sp.
MJ3]
Length = 192
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 117/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ V+ ++QL+ LA D D DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIMLGSPIDDNVSNSIVAQLLFLAADDPDKDISLYINSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G +G RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICTGMAASMGAFLLNAGTEGKRYALPNSEVMIHQPLGGTQGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
N + R K++++ + TGQP E +Q+ T+RD F+ A EA+++GLID ++E
Sbjct: 139 HANRIIRMREKLNKILSERTGQPYEVIQRDTDRDNFMDAHEAVDYGLIDKVMEN 192
>gi|404379126|ref|ZP_10984194.1| ATP-dependent Clp protease proteolytic subunit [Simonsiella
muelleri ATCC 29453]
gi|294483471|gb|EFG31156.1| ATP-dependent Clp protease proteolytic subunit [Simonsiella
muelleri ATCC 29453]
Length = 206
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 123/193 (63%), Gaps = 6/193 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RIIF+ P+N A ++QL+ L + + D D
Sbjct: 7 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKD 66
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGGS+ + ++I+D M++IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 67 IYFYINSPGGSVSAGMSIFDTMNFIKPDVQTLCLGQAASMGAFLLSAGAKGKRFALPNSR 126
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
IM++QP G GG D++ E + + K++ + A TGQP+EK+++ T+RD F+SA
Sbjct: 127 IMIHQPLISGGLGGQASDIEIHARELIKLKEKLNNLLAKHTGQPLEKIERDTDRDNFMSA 186
Query: 255 AEAMEFGLIDGIL 267
AME+GLID ++
Sbjct: 187 QTAMEYGLIDKVI 199
>gi|410697314|gb|AFV76382.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
oshimai JL-2]
Length = 194
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 122/175 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANTVVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P+A++M++QP G+ G D+
Sbjct: 78 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGARGTASDIAI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ ++ + A TGQP+EKV++ T+RD +LSA EA+E+GLID ++ E
Sbjct: 138 QAQEILKAKKLLNEILAKHTGQPLEKVERDTDRDYYLSAKEALEYGLIDQVVTRE 192
>gi|88809960|ref|ZP_01125465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 7805]
gi|88786150|gb|EAR17312.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 7805]
Length = 229
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 125/192 (65%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P ++P V+ G D+ S L R RIIF+G ++ VA ++QL+ L D + DI
Sbjct: 28 PGVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQLLFLEAEDPEKDI 87
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 88 QVYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 147
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP++K+ + T+RD FLS +EA
Sbjct: 148 MIHQPMGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLDKIAEDTDRDYFLSPSEA 207
Query: 258 MEFGLIDGILET 269
+++GLID ++++
Sbjct: 208 VDYGLIDRVVDS 219
>gi|116256435|sp|Q3ANI8.2|CLPP1_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
Length = 207
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 6 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 65
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 66 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 125
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP++K+ + T+RD FLS AEA
Sbjct: 126 MIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEA 185
Query: 258 MEFGLIDGILET 269
+E+GLID ++++
Sbjct: 186 VEYGLIDRVVDS 197
>gi|356496453|ref|XP_003517082.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like [Glycine max]
Length = 306
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 123/188 (65%)
Query: 83 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
P P+ G D+ +L R RI+F+G I+ VA +SQL+ L +D DI +++N
Sbjct: 80 PQTPSTAARGAEGDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDALDPTKDIRLFIN 139
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
GGS+ + +AIYD + ++ V TV G+AAS A++IL GG KG R+AMPN RIM++QP
Sbjct: 140 STGGSLSATMAIYDAVQLVRADVSTVALGIAASTASVILGGGTKGKRFAMPNTRIMVHQP 199
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
G+ G DV+ Q E + +++ I R+ ++FTG+ E+VQ+ +RD+++S EA+E+G+
Sbjct: 200 LGGASGQAIDVEIQAKEVMHNKNNITRIISSFTGRSFEQVQKDIDRDKYMSPIEAVEYGI 259
Query: 263 IDGILETE 270
IDG+++ +
Sbjct: 260 IDGVIDRD 267
>gi|145589117|ref|YP_001155714.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047523|gb|ABP34150.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 209
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R R++F+ +N A I+QL+ L + + D DI +
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVNDQTANLVIAQLLFLESENPDKDISL 77
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +L GEKG RYA+PN+R+M+
Sbjct: 78 YINSPGGSVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGEKGKRYALPNSRVMI 137
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++++ A TGQ I+ + + T+RD F+SA +A E
Sbjct: 138 HQPLGGARGQASDIEIQAREILYLRERLNKILADRTGQSIDTIAKDTDRDNFMSAEQARE 197
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 198 YGLIDKVIE 206
>gi|383788383|ref|YP_005472952.1| ATP-dependent Clp protease proteolytic subunit [Caldisericum exile
AZM16c01]
gi|381364020|dbj|BAL80849.1| ATP-dependent Clp protease proteolytic subunit [Caldisericum exile
AZM16c01]
Length = 195
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P++P+V+ G D+ S L ++RIIF+ I ++ A +++L+ L ++D DI
Sbjct: 2 PIIPSVVETTGRGEVSFDIYSRLLKDRIIFLTGEIETVHADLIVAELLYLESLDSTQDIY 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGG + +AIYD M +IK V T+C G AAS AA+ILA G KG RYA+P++RI+
Sbjct: 62 LYINSPGGEVIPGMAIYDTMQYIKAPVATICLGQAASLAAVILAAGRKGKRYALPHSRIL 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D++ Q E + + I+ + + TGQP+EK+Q+ TERD F+S EA
Sbjct: 122 IHQPWGGAQGQATDIEIQAKELIRIKRMINEILSKHTGQPVEKIQRDTERDYFMSPEEAK 181
Query: 259 EFGLIDGIL 267
E+GLID I+
Sbjct: 182 EYGLIDQII 190
>gi|318043033|ref|ZP_07974989.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CB0101]
Length = 194
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI +
Sbjct: 1 MLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKDIQI 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM+
Sbjct: 61 YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++ + A TGQP+EK+ + T+RD FLS AEA++
Sbjct: 121 HQPLGGAQGQAVDIEIQAKEILYLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEAVQ 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDRVV 188
>gi|427404659|ref|ZP_18895399.1| ATP-dependent Clp protease proteolytic subunit [Massilia timonae
CCUG 45783]
gi|425716830|gb|EKU79799.1| ATP-dependent Clp protease proteolytic subunit [Massilia timonae
CCUG 45783]
Length = 207
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 121/174 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N +A ++Q++ L + + D DI +Y+N PGGS+ + LAI+
Sbjct: 30 DIYSRLLKERVIFLVGPVNDQMANLIVAQMLFLESENPDKDISLYINSPGGSVSAGLAIF 89
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+++PN+R+M++QP GS G D++
Sbjct: 90 DTMNFIKPDVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRVMIHQPSGGSQGMASDIEI 149
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R ++ R+ A TGQ IE++ + T+RDRF+SA E++E+G+ID +L +
Sbjct: 150 QAKEILYLRERLARIMADNTGQSIEQIHKDTDRDRFMSAEESVEYGMIDKVLTS 203
>gi|149911805|ref|ZP_01900408.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
gi|149805105|gb|EDM65128.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
Length = 207
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVSAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LAGGEKG R+A+PNA+IM++QP G G D++
Sbjct: 92 DTMQFIKPNVSTICMGMAASMGAFLLAGGEKGKRHALPNAKIMIHQPLGGYQGQASDIEI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + ++ K++ + A TGQ +++ + T+RD F+++AEAM++GLID ++
Sbjct: 152 HANEIIKTKRKLNEILAEHTGQEYDRLARDTDRDNFMTSAEAMDYGLIDTVI 203
>gi|160898086|ref|YP_001563668.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Delftia
acidovorans SPH-1]
gi|333915639|ref|YP_004489371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Delftia sp.
Cs1-4]
gi|160363670|gb|ABX35283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Delftia
acidovorans SPH-1]
gi|333745839|gb|AEF91016.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Delftia sp.
Cs1-4]
Length = 202
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L ++R+IF+ P+N A ++QL+ L + + D DI
Sbjct: 11 MIPMVIEQSGRGERSYDIYSRLLKDRVIFLVGPVNDQTANLVVAQLLFLESENPDKDISF 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAI+D M++IKP V T+C G+AAS A +LA G KG R+A+PN+++M+
Sbjct: 71 YINSPGGSVSAGLAIFDTMNFIKPDVSTLCTGIAASMGAFLLAAGTKGKRFALPNSQVMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G +++ E + +R +++++ A TGQP+EK+Q TERD FLSA EA +
Sbjct: 131 HQPLGGMQGQATEIEIHAREILKTRERLNKILAERTGQPLEKIQHDTERDYFLSAEEAKD 190
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 191 YGLVDQVI 198
>gi|428209784|ref|YP_007094137.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Chroococcidiopsis thermalis PCC 7203]
gi|428011705|gb|AFY90268.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Chroococcidiopsis thermalis PCC 7203]
Length = 202
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 124/191 (64%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ I+S +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQAIDSNLANLIVAQLLYLDAEDGEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++ A TGQP+E+++Q TERD F+S EAM+
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRKLNEHLAEHTGQPLERIEQDTERDFFMSPQEAMD 180
Query: 260 FGLIDGILETE 270
+GLID +++ +
Sbjct: 181 YGLIDQVIDKK 191
>gi|87123284|ref|ZP_01079135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. RS9917]
gi|86169004|gb|EAQ70260.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. RS9917]
Length = 199
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
MP V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + +I +Y
Sbjct: 1 MPTVVEQSGRGERSFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKEIQIY 60
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+P+ARIM++
Sbjct: 61 INSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPSARIMIH 120
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G D++ Q E + + ++ + A TGQP+EK+ + T+RD FLS AEA+E+
Sbjct: 121 QPLGGAQGQAVDIEIQAQEILFLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEAVEY 180
Query: 261 GLIDGILET 269
GLID ++++
Sbjct: 181 GLIDRVVDS 189
>gi|71281884|ref|YP_270452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
psychrerythraea 34H]
gi|110816457|sp|Q47XL8.1|CLPP_COLP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|71147624|gb|AAZ28097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
psychrerythraea 34H]
Length = 220
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A I+QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 43 DIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDKDIYLYINSPGGSVTAGMAIY 102
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP + TVC G AAS A +L+GGEKG RY +PNAR+M++QP G G D +
Sbjct: 103 DTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNARVMIHQPLGGFQGQASDFEI 162
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + + K++++ A TGQ ++KV Q T+RD FLSA A+E+GL+D ILE
Sbjct: 163 HAKEILFIKDKLNKLMAEHTGQTLDKVSQDTDRDNFLSAEAAVEYGLVDSILE 215
>gi|407478072|ref|YP_006791949.1| ATP-dependent Clp protease proteolytic subunit [Exiguobacterium
antarcticum B7]
gi|407062151|gb|AFS71341.1| ATP-dependent Clp protease proteolytic subunit [Exiguobacterium
antarcticum B7]
Length = 192
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ LA D D +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIILLGSAIDDNVANSVVAQLLFLAAEDPDKEISLYINSPGGSITAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP+V T+C G+AAS A +L G KG R+A+PNA IM++QP G+ G D+K
Sbjct: 78 DTMNFIKPQVSTICIGMAASMGAFLLQAGAKGKRFALPNAEIMIHQPLGGTQGQASDIKI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ R ++++ A TGQP+E +++ TERD F+SA A ++GLID ++E
Sbjct: 138 HAERIIKMREHLNKIMATNTGQPLEVIERDTERDNFMSAQAAADYGLIDRVME 190
>gi|374623544|ref|ZP_09696052.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Ectothiorhodospira sp. PHS-1]
gi|373942653|gb|EHQ53198.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Ectothiorhodospira sp. PHS-1]
Length = 216
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 116/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGG + + LAIY
Sbjct: 36 DIYSRLLKERVIFVVGPVEDYMANVIVAQLLFLESENPDKDISLYINSPGGVVTAGLAIY 95
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++LAGG G RY +P++R+M++QP G G D+
Sbjct: 96 DTMQFIKPDVSTLCIGQAASMGAVLLAGGAAGKRYCLPHSRVMIHQPLGGFQGQATDIDI 155
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + R +++ + + TGQP+E+++Q TERDRFLSA +A E+G+ID +LET
Sbjct: 156 HAREILKVRDQLNGILSKHTGQPVERIEQDTERDRFLSATDAQEYGIIDKVLET 209
>gi|15616126|ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
C-125]
gi|11386690|sp|Q9K709.1|CLPP1_BACHD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|10176188|dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
C-125]
Length = 194
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 116/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ R ++R+ A TGQP+E++ + T+RD F++A +A E+GLID ++ET
Sbjct: 139 HTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKAREYGLIDKVIET 192
>gi|262277075|ref|ZP_06054868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
proteobacterium HIMB114]
gi|262224178|gb|EEY74637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
proteobacterium HIMB114]
Length = 204
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L + RIIF+ PINS ++ +QL+ L + + +I +
Sbjct: 12 LVPMVIEQTPRGERSFDIYSRLLKERIIFLTGPINSYISSLVSAQLLFLESENNSKEIYL 71
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + LAIYD M +IKP V T+C G AAS + +LA GEKG+R ++PNARIM+
Sbjct: 72 YINSPGGVVTDGLAIYDTMQFIKPTVSTLCIGQAASMGSFLLAAGEKGLRMSLPNARIMV 131
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP +G G D++ E + ++ +++ +Y+ TGQ +E +++ ERD F+SA EA +
Sbjct: 132 HQPSAGFQGQATDIEIHTKEILSTKKRLNEIYSKHTGQTVETIKEALERDNFMSAEEAKK 191
Query: 260 FGLIDGILE 268
FGL+D ++E
Sbjct: 192 FGLVDKVVE 200
>gi|393776900|ref|ZP_10365194.1| ClpP protein [Ralstonia sp. PBA]
gi|392716257|gb|EIZ03837.1| ClpP protein [Ralstonia sp. PBA]
Length = 217
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 122/185 (65%), Gaps = 4/185 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAFDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRFALPNSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++++ + TGQP+EK+ + T+RD F+SA +A+E
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRERLNQILSDVTGQPVEKIARDTDRDNFMSADQAVE 204
Query: 260 FGLID 264
+GLID
Sbjct: 205 YGLID 209
>gi|78211620|ref|YP_380399.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CC9605]
gi|260436691|ref|ZP_05790661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 8109]
gi|78196079|gb|ABB33844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. CC9605]
gi|260414565|gb|EEX07861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 8109]
Length = 224
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 23 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 82
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 83 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 142
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP++K+ + T+RD FLS AEA
Sbjct: 143 MIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEA 202
Query: 258 MEFGLIDGILET 269
+E+GLID ++++
Sbjct: 203 VEYGLIDRVVDS 214
>gi|407981209|ref|ZP_11161953.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
HYC-10]
gi|407411926|gb|EKF33805.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
HYC-10]
Length = 198
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ + TGQPIE +++ T+RD F +A EA+E+GLID +L
Sbjct: 139 AAKRILSLRDKLNQVLSERTGQPIEVIERDTDRDNFKTAEEALEYGLIDKVL 190
>gi|319789118|ref|YP_004150751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
ammonificans HB-1]
gi|317113620|gb|ADU96110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
ammonificans HB-1]
Length = 200
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ +G PI+ VA ++QL+ L D + DI +Y+N PGG + + LAIY
Sbjct: 24 DIYSRLLKDRIVMLGTPIDDHVANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++LA G KG R+A+P+ARIM++QP G G D++
Sbjct: 84 DTMQYIKPDVVTICMGQAASMGAVLLAAGAKGKRFALPHARIMIHQPLGGFQGQATDIEI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ + A T QP+EKV+Q TERD F+SA EA E+GLID +L
Sbjct: 144 HAKEILRLKRMLNEILAKHTRQPVEKVEQDTERDYFMSAEEAKEYGLIDKVL 195
>gi|402298633|ref|ZP_10818309.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
alcalophilus ATCC 27647]
gi|401726173|gb|EJS99417.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
alcalophilus ATCC 27647]
Length = 193
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 118/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLNAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKPKV T+C G+AAS A +L+ GEKG RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMNFIKPKVSTICIGMAASMGAFLLSAGEKGKRYALPNSEVMIHQPLGGTRGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ R ++ + A TGQP+E +++ T+RD F++A +A E+GLID I+++
Sbjct: 139 HTRRILEMRQTLNEILAERTGQPLEVIERDTDRDNFMTAEKAKEYGLIDDIIKS 192
>gi|354567676|ref|ZP_08986844.1| ATP-dependent Clp protease proteolytic subunit [Fischerella sp.
JSC-11]
gi|353542134|gb|EHC11598.1| ATP-dependent Clp protease proteolytic subunit [Fischerella sp.
JSC-11]
Length = 231
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 126/197 (63%), Gaps = 4/197 (2%)
Query: 75 ISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLAT 130
I +N ++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L
Sbjct: 19 IRAQNGPSNIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDTVANSIVAQLLFLDA 78
Query: 131 IDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRY 190
D + DI +Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +LA G G R
Sbjct: 79 EDPEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLAAGTAGKRM 138
Query: 191 AMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250
++P++RIM++QP G+ G D++ Q E + + K++++ A TGQP+E+++ T+RD
Sbjct: 139 SLPDSRIMIHQPLGGAQGQAIDIEIQAREILYIKGKLNQLLAHHTGQPLERIEADTDRDF 198
Query: 251 FLSAAEAMEFGLIDGIL 267
F+SA EA +GLID ++
Sbjct: 199 FMSAEEAKNYGLIDQVI 215
>gi|332707230|ref|ZP_08427283.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
gi|332353964|gb|EGJ33451.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
Length = 200
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L D++ DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSDLANLVVAQLLFLEADDQEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ + P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNQVAPDVCTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQP+EK+Q+ TERD F+SA EA +
Sbjct: 121 HQPLGGAQGQASDIEIQAKEILYHKQQLNNYLAEHTGQPLEKIQEDTERDFFMSATEAKD 180
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 181 YGLIDQVIE 189
>gi|33862335|ref|NP_893895.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9313]
gi|67460519|sp|Q7V992.1|CLPP1_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|33640448|emb|CAE20237.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9313]
Length = 224
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 124/193 (64%), Gaps = 4/193 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
+P ++P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + D
Sbjct: 22 SPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKD 81
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L GG KG R A+PNAR
Sbjct: 82 IQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNAR 141
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
IM++QP G+ G D++ Q E + + ++ + A TGQP+ K+ + T+RD FLS A+
Sbjct: 142 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAK 201
Query: 257 AMEFGLIDGILET 269
A+E+GLID ++++
Sbjct: 202 AVEYGLIDRVVDS 214
>gi|374619902|ref|ZP_09692436.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium HIMB55]
gi|374303129|gb|EHQ57313.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium HIMB55]
Length = 205
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 117/173 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + R+IFI PI +A ++QL+ L + + D DI +Y+N PGGS+ + L+I
Sbjct: 30 FDIYSRLLKERVIFIVGPIEDQMANLVVAQLLFLESENPDKDIHIYINSPGGSVTAGLSI 89
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP+V T+C G AAS A +L+GG KG R +PNAR M++QP G+ G D++
Sbjct: 90 YDTMQFIKPEVSTMCLGQAASMGAFLLSGGTKGKRLILPNARTMIHQPSGGAQGQATDIE 149
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQ ++ ++Q TERDRF+SA +++E+GL+D ++
Sbjct: 150 IQAKEILFLRERLNRLLADHTGQSLDVIEQDTERDRFMSAEQSVEYGLVDQVI 202
>gi|358051444|ref|ZP_09145643.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
simiae CCM 7213]
gi|357259050|gb|EHJ08908.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
simiae CCM 7213]
Length = 194
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
N + +R K++R+ + TGQ IEK+QQ T+RD FL+A EA E+GLID ++
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAEEAKEYGLIDEVM 190
>gi|113953857|ref|YP_729303.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CC9311]
gi|113881208|gb|ABI46166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. CC9311]
Length = 229
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P +P V+ G D+ S L R RIIF+G +N VA ++QL+ L D + DI
Sbjct: 29 PGVPTVVEQSGRGERSFDIYSRLLRERIIFLGTDVNDQVADALVAQLLFLEAEDPEKDIQ 88
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGSI + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM
Sbjct: 89 VYINSPGGSITAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIM 148
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D++ E + + ++ + A TGQP+ K+ + TERD FLS AEA+
Sbjct: 149 IHQPLGGAQGQAVDIEIMAQEILFLKETLNGLMADHTGQPLAKITEDTERDYFLSPAEAV 208
Query: 259 EFGLIDGILE 268
E+GLID +++
Sbjct: 209 EYGLIDRVVD 218
>gi|434402424|ref|YP_007145309.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Cylindrospermum stagnale PCC 7417]
gi|428256679|gb|AFZ22629.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Cylindrospermum stagnale PCC 7417]
Length = 232
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANSIVAQLLFLDAEDSEKDIQL 88
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD M I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTMQQIRPNVVTICFGLAASMGAFLLTAGAAGKRMSLPDSRIMI 148
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++++ A TGQ +EK++ TERD F+SA EA
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAKLNQLLAQHTGQALEKIEADTERDFFMSAEEAKN 208
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 209 YGLIDQVI 216
>gi|422320060|ref|ZP_16401128.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans C54]
gi|317405213|gb|EFV85552.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans C54]
Length = 217
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 118/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++R+ A TGQ I+++ TERD F+SA +A+ +GL+D ++ +
Sbjct: 160 QAREILDLRERLNRILADNTGQSIDRIALDTERDNFMSAEDAVSYGLVDKVMTS 213
>gi|428320528|ref|YP_007118410.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
gi|428244208|gb|AFZ09994.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
Length = 229
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 121/191 (63%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G P+ VA ++QL+ L D + D+ M
Sbjct: 26 VVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVTDEVADSIVAQLLYLDAEDPEKDVQM 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M I+P V T+C+G+AAS A +L G G R ++P++RIM+
Sbjct: 86 YINSPGGSVTAGMAIYDTMQQIRPDVVTICYGLAASMGAFLLTAGAHGKRMSLPSSRIMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++++ A TGQPIEK++ TERD F+SA EA
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYHKRKLNQLLAHHTGQPIEKLEADTERDFFMSAEEAKN 205
Query: 260 FGLIDGILETE 270
+GL+D ++ E
Sbjct: 206 YGLVDRVIAKE 216
>gi|91787906|ref|YP_548858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
sp. JS666]
gi|91697131|gb|ABE43960.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
sp. JS666]
Length = 218
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+ + +AIY
Sbjct: 43 DIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIY 102
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L+ G KG R+++PN+R+M++QP G+ G D++
Sbjct: 103 DTMQFIKPDVSTLCVGMAASMGAFLLSAGAKGKRFSLPNSRVMIHQPSGGAQGQATDIEI 162
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +R +++R+ AA TGQPIEK+++ TERD FL A +A E+GL+D ++
Sbjct: 163 HARDILKTRDQLNRILAANTGQPIEKIERDTERDYFLFAEDAKEYGLVDQVI 214
>gi|172058408|ref|YP_001814868.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Exiguobacterium sibiricum 255-15]
gi|171990929|gb|ACB61851.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Exiguobacterium sibiricum 255-15]
Length = 192
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ LA D D +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIILLGSAIDDNVANSVVAQLLFLAAEDPDKEISLYINSPGGSITAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP+V T+C G+AAS A +L G KG R+A+PNA IM++QP G+ G D+K
Sbjct: 78 DTMNFIKPQVSTICIGMAASMGAFLLQAGAKGKRFALPNAEIMIHQPLGGTQGQASDIKI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ R ++++ A TGQP+E +++ TERD F+SA A ++GLID ++E
Sbjct: 138 HAERIIKMREHLNKIMAENTGQPLEVIERDTERDNFMSAQAAADYGLIDRVME 190
>gi|212640342|ref|YP_002316862.1| ATP-dependent Clp protease proteolytic subunit [Anoxybacillus
flavithermus WK1]
gi|433447199|ref|ZP_20410832.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anoxybacillus
flavithermus TNO-09.006]
gi|226706440|sp|B7GL34.1|CLPP_ANOFW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|212561822|gb|ACJ34877.1| ATP-dependent Clp protease proteolytic subunit (class III
heat-shock protein) [Anoxybacillus flavithermus WK1]
gi|432000033|gb|ELK20939.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anoxybacillus
flavithermus TNO-09.006]
Length = 196
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQPIE +++ T+RD F++A +A E+GLID +L
Sbjct: 139 AAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAEKAKEYGLIDRVL 190
>gi|428311957|ref|YP_007122934.1| ATP-dependent Clp protease proteolytic subunit ClpP [Microcoleus
sp. PCC 7113]
gi|428253569|gb|AFZ19528.1| ATP-dependent Clp protease proteolytic subunit ClpP [Microcoleus
sp. PCC 7113]
Length = 202
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 125/189 (66%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQP++S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQPVDSDLANLIVAQLLFLEAEDAEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ ++P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNQVRPDVCTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQPIE++++ TERD F+SA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRRLNEFLAEHTGQPIERIEEDTERDFFMSAEEAKD 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|33862212|ref|NP_893773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|67460514|sp|Q7UZK7.1|CLPP3_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|33634430|emb|CAE20115.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 215
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 119/190 (62%), Gaps = 4/190 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D DI +Y
Sbjct: 25 VPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPHKDIQIY 84
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+ + LAIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 85 INSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 144
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G +++ Q E + + ++ + A T Q +EK+ + TERD FLS EA+E+
Sbjct: 145 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEY 204
Query: 261 GLIDGILETE 270
GLID +++ +
Sbjct: 205 GLIDKVIKND 214
>gi|157693854|ref|YP_001488316.1| ATP-dependent Clp protease proteolytic subunit [Bacillus pumilus
SAFR-032]
gi|389574748|ref|ZP_10164807.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. M 2-6]
gi|167008647|sp|A8FHN9.1|CLPP_BACP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157682612|gb|ABV63756.1| S14 family endopeptidase ClpP [Bacillus pumilus SAFR-032]
gi|388425674|gb|EIL83500.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. M 2-6]
Length = 198
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQPIE +++ T+RD F +A EA+++GLID +L
Sbjct: 139 AAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEALQYGLIDKVL 190
>gi|30023185|ref|NP_834816.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 14579]
gi|47567358|ref|ZP_00238071.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus G9241]
gi|49481130|ref|YP_039138.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52140414|ref|YP_086415.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
E33L]
gi|75759660|ref|ZP_00739744.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|118480187|ref|YP_897338.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis str. Al Hakam]
gi|190015186|ref|YP_001966706.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
gi|190015451|ref|YP_001967031.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
gi|190015619|ref|YP_001967344.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus]
gi|196032944|ref|ZP_03100357.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus W]
gi|196039610|ref|ZP_03106915.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus NVH0597-99]
gi|196045601|ref|ZP_03112831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus 03BB108]
gi|206970378|ref|ZP_03231331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH1134]
gi|208702014|ref|YP_002267309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus H3081.97]
gi|217956873|ref|YP_002335967.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH187]
gi|217962631|ref|YP_002341203.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH187]
gi|218231097|ref|YP_002369926.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
B4264]
gi|218848317|ref|YP_002455085.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH820]
gi|218900271|ref|YP_002448682.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
G9842]
gi|218906323|ref|YP_002454157.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH820]
gi|222098603|ref|YP_002532661.1| ATP-dependent clp protease proteolytic subunit [Bacillus cereus Q1]
gi|225867113|ref|YP_002752491.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus 03BB102]
gi|228903623|ref|ZP_04067744.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis IBL 4222]
gi|228910978|ref|ZP_04074786.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis IBL 200]
gi|228917753|ref|ZP_04081294.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228923875|ref|ZP_04087152.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228930150|ref|ZP_04093159.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228936434|ref|ZP_04099232.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228942286|ref|ZP_04104825.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228948867|ref|ZP_04111142.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228955388|ref|ZP_04117393.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228961377|ref|ZP_04122991.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228968242|ref|ZP_04129240.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228975215|ref|ZP_04135773.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228981853|ref|ZP_04142148.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis Bt407]
gi|228988373|ref|ZP_04148465.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229072597|ref|ZP_04205799.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
F65185]
gi|229082356|ref|ZP_04214819.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock4-2]
gi|229087619|ref|ZP_04219749.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-44]
gi|229094242|ref|ZP_04225321.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-42]
gi|229112558|ref|ZP_04242095.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock1-15]
gi|229124654|ref|ZP_04253836.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
95/8201]
gi|229130395|ref|ZP_04259353.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-Cer4]
gi|229147676|ref|ZP_04276019.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-ST24]
gi|229153305|ref|ZP_04281483.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
m1550]
gi|229158714|ref|ZP_04286772.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 4342]
gi|229164770|ref|ZP_04292604.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
R309803]
gi|229181405|ref|ZP_04308733.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
172560W]
gi|229187359|ref|ZP_04314502.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BGSC 6E1]
gi|229193390|ref|ZP_04320339.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 10876]
gi|254724422|ref|ZP_05186206.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. A1055]
gi|296505568|ref|YP_003667268.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis BMB171]
gi|301056609|ref|YP_003794820.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
biovar anthracis str. CI]
gi|365162906|ref|ZP_09359029.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus sp.
7_6_55CFAA_CT2]
gi|375287157|ref|YP_005107596.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus NC7401]
gi|376258514|ref|YP_005150236.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
NC7401]
gi|376269038|ref|YP_005121750.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
F837/76]
gi|384182975|ref|YP_005568737.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|384189233|ref|YP_005575129.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar chinensis CT-43]
gi|402563256|ref|YP_006605980.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis HD-771]
gi|410677561|ref|YP_006929932.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus
thuringiensis Bt407]
gi|423355628|ref|ZP_17333252.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
IS075]
gi|423356394|ref|ZP_17334004.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
IS075]
gi|423363017|ref|ZP_17340517.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD022]
gi|423375306|ref|ZP_17352643.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
AND1407]
gi|423386632|ref|ZP_17363887.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1X1-2]
gi|423411112|ref|ZP_17388232.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3O-2]
gi|423427236|ref|ZP_17404267.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3X2-2]
gi|423433103|ref|ZP_17410107.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4O-1]
gi|423438545|ref|ZP_17415526.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4X12-1]
gi|423506972|ref|ZP_17483561.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HD73]
gi|423527041|ref|ZP_17503486.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB1-1]
gi|423554402|ref|ZP_17530728.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
ISP3191]
gi|423565981|ref|ZP_17542256.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A1]
gi|423571713|ref|ZP_17547953.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A12]
gi|423572165|ref|ZP_17548378.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A12]
gi|423573202|ref|ZP_17549321.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-D12]
gi|423578071|ref|ZP_17554189.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-D12]
gi|423583301|ref|ZP_17559412.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD014]
gi|423588968|ref|ZP_17565054.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD045]
gi|423608514|ref|ZP_17584406.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD102]
gi|423608923|ref|ZP_17584814.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD102]
gi|423631886|ref|ZP_17607633.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD154]
gi|423634004|ref|ZP_17609657.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD156]
gi|423644305|ref|ZP_17619922.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD166]
gi|423650994|ref|ZP_17626564.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD169]
gi|423658059|ref|ZP_17633358.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD200]
gi|434378268|ref|YP_006612912.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis HD-789]
gi|449092201|ref|YP_007424642.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|452201640|ref|YP_007481721.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|67460463|sp|Q631K2.1|CLPP2_BACCZ RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|67460476|sp|Q6HBD8.1|CLPP2_BACHK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|67460524|sp|Q815J6.1|CLPP2_BACCR RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|17981472|gb|AAL51030.1|AF454757_1 ClpP1 [Bacillus thuringiensis]
gi|29898745|gb|AAP12017.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 14579]
gi|47555979|gb|EAL14317.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus G9241]
gi|49332686|gb|AAT63332.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|51973883|gb|AAU15433.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
[Bacillus cereus E33L]
gi|74492856|gb|EAO55988.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|116584526|gb|ABK00643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus]
gi|116584862|gb|ABK00977.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
gi|116585132|gb|ABK01241.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
gi|118419412|gb|ABK87831.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
thuringiensis str. Al Hakam]
gi|195994373|gb|EDX58328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus W]
gi|196023432|gb|EDX62109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus 03BB108]
gi|196029770|gb|EDX68372.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus NVH0597-99]
gi|206734955|gb|EDZ52124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH1134]
gi|208657869|gb|ACI30239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus H3081.97]
gi|217064081|gb|ACJ78331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH187]
gi|217068436|gb|ACJ82684.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH187]
gi|218159054|gb|ACK59046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus B4264]
gi|218536274|gb|ACK88672.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH820]
gi|218540368|gb|ACK92764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH820]
gi|218541218|gb|ACK93612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus G9842]
gi|221242662|gb|ACM15372.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
[Bacillus cereus Q1]
gi|225789761|gb|ACO29978.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus 03BB102]
gi|228590104|gb|EEK47974.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 10876]
gi|228596063|gb|EEK53740.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BGSC 6E1]
gi|228601980|gb|EEK59473.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
172560W]
gi|228618700|gb|EEK75692.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
R309803]
gi|228624698|gb|EEK81467.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 4342]
gi|228629909|gb|EEK86560.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
m1550]
gi|228635689|gb|EEK92176.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-ST24]
gi|228653094|gb|EEL08974.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-Cer4]
gi|228658805|gb|EEL14463.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
95/8201]
gi|228670938|gb|EEL26245.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock1-15]
gi|228689234|gb|EEL43056.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-42]
gi|228695735|gb|EEL48590.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-44]
gi|228700788|gb|EEL53311.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock4-2]
gi|228710573|gb|EEL62546.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
F65185]
gi|228771354|gb|EEM19828.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228777965|gb|EEM26237.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis Bt407]
gi|228784494|gb|EEM32515.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228791415|gb|EEM39019.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228798262|gb|EEM45261.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228804180|gb|EEM50794.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228810829|gb|EEM57175.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228817330|gb|EEM63416.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228823266|gb|EEM69100.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228829435|gb|EEM75063.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228835674|gb|EEM81038.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228841990|gb|EEM87096.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228848633|gb|EEM93479.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis IBL 200]
gi|228856052|gb|EEN00591.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis IBL 4222]
gi|296326620|gb|ADH09548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis BMB171]
gi|300378778|gb|ADK07682.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
biovar anthracis str. CI]
gi|324329059|gb|ADY24319.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|326942942|gb|AEA18838.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar chinensis CT-43]
gi|358355684|dbj|BAL20856.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus NC7401]
gi|358356253|dbj|BAL21424.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
NC7401]
gi|363617191|gb|EHL68590.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus sp.
7_6_55CFAA_CT2]
gi|364514838|gb|AEW58237.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
F837/76]
gi|401076768|gb|EJP85119.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD022]
gi|401079111|gb|EJP87414.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
IS075]
gi|401081980|gb|EJP90251.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
IS075]
gi|401092725|gb|EJQ00850.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
AND1407]
gi|401108128|gb|EJQ16060.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3O-2]
gi|401109421|gb|EJQ17345.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3X2-2]
gi|401113015|gb|EJQ20887.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4O-1]
gi|401116160|gb|EJQ24002.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4X12-1]
gi|401181200|gb|EJQ88353.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
ISP3191]
gi|401192773|gb|EJQ99783.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A1]
gi|401198721|gb|EJR05636.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A12]
gi|401199716|gb|EJR06613.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A12]
gi|401203128|gb|EJR09969.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-D12]
gi|401209361|gb|EJR16120.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD014]
gi|401215208|gb|EJR21926.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-D12]
gi|401225356|gb|EJR31905.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD045]
gi|401236392|gb|EJR42852.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD102]
gi|401238523|gb|EJR44964.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD102]
gi|401263108|gb|EJR69241.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD154]
gi|401271370|gb|EJR77387.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD166]
gi|401280314|gb|EJR86235.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD169]
gi|401281910|gb|EJR87815.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD156]
gi|401288311|gb|EJR94064.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD200]
gi|401632053|gb|EJS49843.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1X1-2]
gi|401791908|gb|AFQ17947.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis HD-771]
gi|401876825|gb|AFQ28992.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis HD-789]
gi|402445783|gb|EJV77651.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HD73]
gi|402454204|gb|EJV85997.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB1-1]
gi|409176690|gb|AFV20995.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus
thuringiensis Bt407]
gi|449025958|gb|AGE81121.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|452107033|gb|AGG03973.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 193
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A +A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKIF 190
>gi|159904323|ref|YP_001551667.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9211]
gi|159889499|gb|ABX09713.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9211]
Length = 200
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 123/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P ++P V+ G D+ S L R RIIF+G +N VA ++Q++ L D + DI
Sbjct: 7 PGVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEAEDPEKDI 66
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R ++PN+RI
Sbjct: 67 QLYINSPGGSVTAGLAIYDTMQQVTPDVVTICYGLAASMGAFLLSGGTKGKRVSLPNSRI 126
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G +++ Q E + + ++ + + TGQPI+K+ + T+RD FLS EA
Sbjct: 127 MIHQPLGGAQGQAVEIEIQAKEILFLKETLNGLLSEHTGQPIDKIAEDTDRDHFLSPQEA 186
Query: 258 MEFGLIDGILET 269
+E+GLID ++ +
Sbjct: 187 VEYGLIDKVINS 198
>gi|312109546|ref|YP_003987862.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
sp. Y4.1MC1]
gi|336233940|ref|YP_004586556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
thermoglucosidasius C56-YS93]
gi|423718668|ref|ZP_17692850.1| ATP-dependent clp protease, proteolytic subunit clpP [Geobacillus
thermoglucosidans TNO-09.020]
gi|311214647|gb|ADP73251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. Y4.1MC1]
gi|335360795|gb|AEH46475.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
thermoglucosidasius C56-YS93]
gi|383368270|gb|EID45543.1| ATP-dependent clp protease, proteolytic subunit clpP [Geobacillus
thermoglucosidans TNO-09.020]
Length = 196
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQPI+ +++ T+RD F++A +A E+G+ID +L
Sbjct: 139 AAKRILFLRDKLNRILSENTGQPIDVIERDTDRDNFMTAQKAQEYGIIDRVL 190
>gi|423082887|ref|ZP_17071470.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 002-P50-2011]
gi|423086337|ref|ZP_17074746.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 050-P50-2011]
gi|357547206|gb|EHJ29100.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 002-P50-2011]
gi|357547324|gb|EHJ29214.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 050-P50-2011]
Length = 194
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 126/188 (67%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIFIG+ IN +A ++QL+ L + D D+DI++
Sbjct: 3 LVPHVIEQTGQGERSYDIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDIII 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS + AIYD M++++ V T+C G+AAS +A +LAGG +G R A+PN+ IM+
Sbjct: 63 YINSPGGSTTAGFAIYDTMNYVRCDVSTICIGMAASMSAFLLAGGTRGKRCALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G DVK V+ + + ++DR+ + TG+ IE +++ T+RD F++A EA E
Sbjct: 123 HQPMGGAKGQATDVKIAVDNILKIKEQLDRILSENTGKSIEDIRRDTDRDNFMTAIEAKE 182
Query: 260 FGLIDGIL 267
+GLID I+
Sbjct: 183 YGLIDYIM 190
>gi|352096782|ref|ZP_08957538.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8016]
gi|351676004|gb|EHA59162.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8016]
Length = 229
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P +P V+ G D+ S L R RIIF+G +N VA ++QL+ L D + DI
Sbjct: 29 PGVPTVVEQSGRGERSFDIYSRLLRERIIFLGTDVNDQVADALVAQLLFLEAEDPEKDIQ 88
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGSI + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM
Sbjct: 89 VYINSPGGSITAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIM 148
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D++ E + + ++ + A TGQP+ K+ + TERD FLS AEA+
Sbjct: 149 IHQPLGGAQGQAVDIEIMAQEILFLKETLNGLMADHTGQPLAKITEDTERDYFLSPAEAV 208
Query: 259 EFGLIDGILE 268
E+GLID +++
Sbjct: 209 EYGLIDRVVD 218
>gi|229815146|ref|ZP_04445483.1| hypothetical protein COLINT_02192 [Collinsella intestinalis DSM
13280]
gi|229809376|gb|EEP45141.1| hypothetical protein COLINT_02192 [Collinsella intestinalis DSM
13280]
Length = 206
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 129/188 (68%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L +RI+F+G+ +NS+ A I+QL+ L + D + DI +
Sbjct: 9 LVPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVNSVTANLVIAQLLHLESQDAEKDISL 68
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG +YS LAI D M++IKP V T+C G+AAS AA++LA G G R+++P+++IM+
Sbjct: 69 YINSPGGEVYSGLAILDTMNYIKPDVSTICVGMAASMAAVLLAAGAPGKRFSLPHSKIMI 128
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ E +R+ ++++ A TG+P E+V++ TERD +L A +A+E
Sbjct: 129 HQPSGGAQGQQTEIEIAAREIRETRNTLNQILADCTGKPFEQVERDTERDNYLRAEQALE 188
Query: 260 FGLIDGIL 267
+GLID I+
Sbjct: 189 YGLIDRIV 196
>gi|194015348|ref|ZP_03053964.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
pumilus ATCC 7061]
gi|194012752|gb|EDW22318.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
pumilus ATCC 7061]
Length = 198
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQPIE +++ T+RD F +A EA+++GLID +L
Sbjct: 139 AAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEALQYGLIDKVL 190
>gi|254432364|ref|ZP_05046067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
PCC 7001]
gi|197626817|gb|EDY39376.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
PCC 7001]
Length = 235
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
Query: 82 PPLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P ++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI
Sbjct: 35 PGVLPTVVEQSGKGERAFDIYSRLLRERIIFLGTGIDDAVADALVAQLLFLEAEDPEKDI 94
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+P+ARI
Sbjct: 95 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPSARI 154
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP+EK+ + T+RD FLS AEA
Sbjct: 155 MIHQPLGGAQGQAVDIEIQAKEILFLKDTLNGLMAEHTGQPLEKIAEDTDRDYFLSPAEA 214
Query: 258 MEFGLIDGIL 267
+++GLID ++
Sbjct: 215 VDYGLIDRVV 224
>gi|148242503|ref|YP_001227660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RCC307]
gi|147850813|emb|CAK28307.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
RCC307]
Length = 196
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ + A R ++QL+ L D D DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFMGEPVTAESANRIVAQLLFLEAEDPDKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M +KP V TVC G+AAS A +LA G G R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLAAGAPGKRSSLQHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + +++ A TGQP++++Q+ T+RD F+S AEA E
Sbjct: 121 HQPLGGAQGQASDIRIQADEILFLKKRLNEELAQRTGQPLDRIQKDTDRDFFMSPAEAAE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDKVID 189
>gi|428777917|ref|YP_007169704.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halothece sp.
PCC 7418]
gi|428692196|gb|AFZ45490.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halothece sp.
PCC 7418]
Length = 228
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 124/191 (64%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G DL S L R RIIF+G P++ +A +Q++ L D + DI +
Sbjct: 28 VVPMVIEQSGMGERAFDLYSRLLRERIIFLGTPVDDQIADSVAAQMLFLEAEDPEKDIQL 87
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD M I+P V T+C+G+AAS A +LAGG G R ++ N+RIM+
Sbjct: 88 YINSPGGSVYAGMAIYDTMQQIQPDVATICYGLAASMGAFLLAGGAAGKRMSLTNSRIMI 147
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + ++ ++ + A TGQP++++ + T+RD ++SA EA E
Sbjct: 148 HQPLGGAQGQAADIEIQAREILYIKNTLNELLAYHTGQPLDRIAEDTDRDFYMSATEAQE 207
Query: 260 FGLIDGILETE 270
+GLID ++ ++
Sbjct: 208 YGLIDQVITSQ 218
>gi|402817756|ref|ZP_10867343.1| ATP-dependent Clp protease proteolytic subunit 2 [Paenibacillus
alvei DSM 29]
gi|402504728|gb|EJW15256.1| ATP-dependent Clp protease proteolytic subunit 2 [Paenibacillus
alvei DSM 29]
Length = 192
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I +A ++QL+ LA D D DI MY+N PGGS+ + IY
Sbjct: 20 DIYSRLLKDRIVFVGSEITDSLANSIVAQLLLLAAEDSDKDIYMYINSPGGSVTAGFGIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS +I+L G KG R+A+PN+ IM++QP G+ G D+
Sbjct: 80 DTMQYIKPQVHTICTGLAASYGSILLLAGAKGKRFALPNSEIMIHQPHGGAQGQASDIAI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ R ++ ++ A TGQP+E++++ +RD F+SA EA+E+G+ID IL+
Sbjct: 140 SAKRILKMRERLVQLMADHTGQPVERIEKDMDRDYFMSAEEALEYGIIDKILK 192
>gi|317968359|ref|ZP_07969749.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CB0205]
Length = 194
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI +
Sbjct: 1 MLPTVVEQSGRGDRAFDIYSRLLRERIIFLGSGIDDQVADAMVAQLLFLEAEDPEKDIQI 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM+
Sbjct: 61 YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++ + + TGQP+EK+ + T+RD FLS AEA++
Sbjct: 121 HQPLGGAQGQAVDIEIQAKEILYLKETLNGLMSEHTGQPLEKIAEDTDRDYFLSPAEAVQ 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDRVV 188
>gi|221633185|ref|YP_002522410.1| Clp protease [Thermomicrobium roseum DSM 5159]
gi|221155739|gb|ACM04866.1| Clp protease [Thermomicrobium roseum DSM 5159]
Length = 205
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 118/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R+RIIF+G PI+ VA I+Q++ LA + +ADI +Y+N PGG +Y+ LAIY
Sbjct: 26 DIYSRLLRDRIIFLGTPIDDQVANAVIAQMLFLAHENPEADIKLYINSPGGLVYAGLAIY 85
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M I+P V T C G+ AS AA++LA G KG R+A+P++R++++Q SG G V D++
Sbjct: 86 DTMQMIEPDVATYCVGLGASMAAVLLAAGTKGKRFALPHSRVLIHQGTSGFRGSVPDIEI 145
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + + A TGQP E+V++ TERD F+SA EA ++G++D +LE
Sbjct: 146 QARETLNLTTMLTELLAFHTGQPFERVKRDTERDYFMSAYEAKDYGIVDHVLE 198
>gi|33241265|ref|NP_876207.1| protease subunit of ATP-dependent Clp protease [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|67460520|sp|Q7V9L6.1|CLPP3_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|33238795|gb|AAQ00860.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 216
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 122/192 (63%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P ++P V+ G D+ S L R RIIF+G +N +A ++Q++ L D + DI
Sbjct: 23 PGVLPTVIEQSGRGERAFDIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDI 82
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P + T+C+G+AAS A +LAGG KG R A+PN+RI
Sbjct: 83 QLYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRI 142
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G +++ Q E + + ++ + A TGQ +EK+ + T+RD FLS EA
Sbjct: 143 MIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEA 202
Query: 258 MEFGLIDGILET 269
+E+GLID ++ +
Sbjct: 203 VEYGLIDKVVNS 214
>gi|333370325|ref|ZP_08462336.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437]
gi|332978057|gb|EGK14795.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437]
Length = 201
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 116/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
DL S L ++RIIFIG PI+ VA ++Q++ LA D D +I +Y+N PGGSI + +AIY
Sbjct: 27 DLYSRLLKDRIIFIGSPIDDSVANSVMAQMLFLAADDPDKEISLYINSPGGSITAGMAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G G D++
Sbjct: 87 DTMQYIKPDVSTICVGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGVRGQAADIQI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ +R +I + A TGQP+ K+++ ++RD F+ A EA E+GL+D ++ T
Sbjct: 147 HAEWILKTRKRIYEILAGRTGQPLSKIERDSDRDFFMDAQEAKEYGLVDQVMIT 200
>gi|374295111|ref|YP_005045302.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
clariflavum DSM 19732]
gi|359824605|gb|AEV67378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
clariflavum DSM 19732]
Length = 194
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN A ++Q++ L D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIFSRLLKDRIIVLSDEINDATASLVVAQMLFLEAEDPDKDIQLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D+K
Sbjct: 79 DTMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGARGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +R +++R+ + TGQP+E++Q TERD F+SA EA +GL+D ++E
Sbjct: 139 HADHIIKTRERLNRILSERTGQPLERIQADTERDFFMSAEEAKAYGLVDEVME 191
>gi|197302444|ref|ZP_03167499.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC
29176]
gi|197298342|gb|EDY32887.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Ruminococcus lactaris ATCC 29176]
Length = 193
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V TVC G+AAS A +L+GG KG R+A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLSGGAKGKRFALPNAEIMIHQPLGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R ++ + AA TG+P+E +Q TERD F+SAAEA E+GLID ++
Sbjct: 139 AAEHILRTRKTLNSILAANTGKPLEVIQTDTERDNFMSAAEAKEYGLIDEVI 190
>gi|428780533|ref|YP_007172319.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dactylococcopsis salina PCC 8305]
gi|428694812|gb|AFZ50962.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dactylococcopsis salina PCC 8305]
Length = 217
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G DL S L R RI+F+GQ ++ +A +Q++ L D + DI +
Sbjct: 20 VVPMVVEQSGMGERAFDLYSRLLRERIVFLGQQVDDQIADSIAAQMLFLEAEDPEKDIQL 79
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD M I+P V T+C+G+AAS A +LAGG +G R ++PN+RIM+
Sbjct: 80 YINSPGGSVYAGMAIYDTMQQIQPDVATICYGIAASMGAFLLAGGAEGKRMSLPNSRIMI 139
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + ++ ++ + A T QP+E++ + TERD ++SA EA +
Sbjct: 140 HQPLGGAQGQAADIEIQAREILYIKNTLNELLAHHTKQPLERITEDTERDFYMSATEAKD 199
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 200 YGLIDEMI 207
>gi|71907348|ref|YP_284935.1| ATP-dependent Clp protease proteolytic subunit [Dechloromonas
aromatica RCB]
gi|110816458|sp|Q47FB6.1|CLPP_DECAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|71846969|gb|AAZ46465.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas
aromatica RCB]
Length = 209
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R+IF+ P+N + A ++QL+ L + D DI
Sbjct: 16 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLVVAQLLFLEAENPDKDIYF 75
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L G KG R+A+PN+R+M+
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRVMI 135
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E + R +++R+ A +GQP+E++++ T+RD FLSAAEA E
Sbjct: 136 HQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDTDRDNFLSAAEAAE 195
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 196 YGLIDKVL 203
>gi|168064316|ref|XP_001784109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664360|gb|EDQ51083.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 230
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 119/175 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ ++ + RI+F+G ++ VA +SQL+ L +D + +I +++NCPGGSI + +AI+
Sbjct: 14 DVMGLMLKQRIVFLGHQMDDFVADAIVSQLLLLDAVDPNKEIRLFVNCPGGSISAAMAIF 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + + V T+CFG+AAS AAI+LAGG G R AMPN+RIM++QP G+ G DV+
Sbjct: 74 DAIQLCRADVSTICFGLAASTAAIVLAGGTPGKRLAMPNSRIMMHQPLGGASGQAIDVEI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + + + R+ + TG+ E+V++ +RDR++S EAME+G+IDG+++ +
Sbjct: 134 QAKEVMYHKSNVTRILSEITGRAPEQVEKDIDRDRYMSPIEAMEYGIIDGVIDKD 188
>gi|124021784|ref|YP_001016091.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9303]
gi|123962070|gb|ABM76826.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9303]
Length = 224
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 124/193 (64%), Gaps = 4/193 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
+P ++P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + D
Sbjct: 22 SPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKD 81
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L GG KG R A+PNAR
Sbjct: 82 IQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNAR 141
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
IM++QP G+ G D++ Q E + + ++ + A TGQP+ K+ + T+RD FLS A+
Sbjct: 142 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAK 201
Query: 257 AMEFGLIDGILET 269
A+E+GLID ++++
Sbjct: 202 AVEYGLIDRVVDS 214
>gi|94264491|ref|ZP_01288278.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
gi|94266601|ref|ZP_01290283.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
gi|93452772|gb|EAT03310.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
gi|93455050|gb|EAT05277.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
Length = 200
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 118/188 (62%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L + RIIF+G +N VA I+Q++ L D D DI
Sbjct: 3 LIPFVIEQTPRGERSYDIYSRLLKERIIFLGTGVNDEVANVVIAQMLFLEADDPDKDITF 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M ++K + T+C G AAS A++LA G KG RYA+PNARI++
Sbjct: 63 YINSPGGSVTAGLAIYDTMRYVKCDIATLCLGQAASMGAVLLAAGTKGKRYALPNARILI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E + R +++M A TGQ ++K+Q TERD F+S+ EA
Sbjct: 123 HQPMGGFQGQASDIDIHAREILRMRQGLNKMLADHTGQKLKKIQTDTERDYFMSSEEAKT 182
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 183 YGLIDKVL 190
>gi|403235930|ref|ZP_10914516.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
10403023]
Length = 197
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPNVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ + TGQP+E +Q+ T+RD F++A AME+GLID ++
Sbjct: 139 AAKRILFLREKLNQILSERTGQPLEVLQRDTDRDNFMTAERAMEYGLIDKVM 190
>gi|365174864|ref|ZP_09362302.1| ATP-dependent Clp protease proteolytic subunit [Synergistes sp.
3_1_syn1]
gi|363613729|gb|EHL65234.1| ATP-dependent Clp protease proteolytic subunit [Synergistes sp.
3_1_syn1]
Length = 194
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++Q++ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 20 DIYSRLLKDRIIFLGTAIDDTVANLVVAQMLFLESEDPDKDISLYINSPGGSVSAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G+AAS A++L G G R A+PNA+IM++QP G G D++
Sbjct: 80 DTMQYIRPNVSTICLGMAASMGAVLLTAGADGKRLALPNAKIMIHQPMGGMQGQASDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + +R K++ + A T QP++K++ T+RD ++SA EA+++G++D I+E
Sbjct: 140 HAKEILKTREKLNEILAKHTRQPLDKIEADTDRDYYMSAEEALKYGIVDKIIE 192
>gi|319891770|ref|YP_004148645.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
pseudintermedius HKU10-03]
gi|317161466|gb|ADV05009.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
pseudintermedius HKU10-03]
Length = 195
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +R +++++ + TGQPIEK+++ T+RD FL+A EA E+GLID ++E E
Sbjct: 139 AAKHILRTRERLNKILSELTGQPIEKIEKDTDRDNFLTAQEAKEYGLIDEVMEPE 193
>gi|425737678|ref|ZP_18855949.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
massiliensis S46]
gi|425481335|gb|EKU48495.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
massiliensis S46]
Length = 195
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 118/176 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G ++ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQVDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG RYA+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRYALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
N + +R K++++ + TGQPI+K+++ T+RD FL+A EA E+GLID ++ E+
Sbjct: 139 AANHILKTRAKLNKILSERTGQPIDKIEKDTDRDNFLTAEEAKEYGLIDEVMAPEH 194
>gi|168335354|ref|ZP_02693449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Epulopiscium
sp. 'N.t. morphotype B']
Length = 193
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + +N + + ++QL+ L D D DI++Y+N PGGSI +AIY
Sbjct: 19 DIYSRLLKDRIILLCDEVNHVTSSLTVAQLLFLEAEDPDKDIMLYINSPGGSIVDGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LAGG+KG R A+PNA IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICMGMAASMGAFLLAGGQKGKRLALPNAEIMIHQPLGGTRGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++++ +A TGQ +EKV TERD +++AAEA E+G+ID ++E
Sbjct: 139 HAEHIIRTKAKMNQILSANTGQTLEKVALDTERDYYMTAAEAKEYGIIDRVIE 191
>gi|452750504|ref|ZP_21950251.1| ATP-dependent Clp protease proteolytic subunit [alpha
proteobacterium JLT2015]
gi|451961698|gb|EMD84107.1| ATP-dependent Clp protease proteolytic subunit [alpha
proteobacterium JLT2015]
Length = 212
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 115/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+ PI +A +QL+ L + + DI MY+N PGG + + +AI
Sbjct: 23 FDIYSRLLRERIVFVTGPIEDHMATLITAQLLYLESENPKKDIYMYINSPGGVVTAGMAI 82
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P+VGTVC G AAS + +L+ GE GMR A+ NARIM++QP G+ G D++
Sbjct: 83 HDTMQYIRPRVGTVCIGQAASMGSFLLSAGEPGMRVALTNARIMIHQPSGGAQGQATDIE 142
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + RH+++ + A +TGQ IE ++ ERD+F+S+AEA +FGL+D + +
Sbjct: 143 IQAKEILRIRHRMNELMAKYTGQDIEVIENAVERDKFMSSAEAKDFGLVDEVFD 196
>gi|402836307|ref|ZP_10884847.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Mogibacterium sp. CM50]
gi|402271403|gb|EJU20647.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Mogibacterium sp. CM50]
Length = 197
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 126/191 (65%), Gaps = 4/191 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ T GG D+ S L ++RIIFI Q I+ +A ++QL+ L D + DI +
Sbjct: 3 LIPYVVEQTCGGERSYDIYSRLLKDRIIFIDQEIDDHLASVVVAQLLFLEAEDPEKDINI 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + IYD M+++KP + T+CFG+AAS A++LA G KG R+A+P+A IM+
Sbjct: 63 YINSPGGSVTAGTGIYDTMNYVKPDIATICFGMAASMGAVLLAAGTKGKRFALPSAEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+K Q ++ K++ + + TGQP E + + T+RD F+SA+EA+E
Sbjct: 123 HQPLGGAKGQASDIKIQAEWMQKTKEKLNTILSEATGQPYETIVRDTDRDNFMSASEAVE 182
Query: 260 FGLIDGILETE 270
+GL+D +L E
Sbjct: 183 YGLVDKVLTKE 193
>gi|357009615|ref|ZP_09074614.1| ClpP [Paenibacillus elgii B69]
Length = 196
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L+ +D + DI +
Sbjct: 3 LVPMVVEQEGRGERSYDIYSRLLKDRIIFLGSAIDDDVANLVIAQLLFLSAVDPEKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + IYD M +IKP V T+C G+AAS +++L G KG RYA+PN+ +M+
Sbjct: 63 YINSPGGSVTAGMGIYDTMQFIKPDVSTICVGMAASMGSLLLTAGAKGKRYALPNSEVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+K + + ++ K++++Y TGQP E++++ T+RD F+SA +A
Sbjct: 123 HQPLGGVRGQASDIKIHADWIIKTKQKLNQIYVERTGQPYERIERDTDRDNFMSAEDAKA 182
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 183 YGLIDAVI 190
>gi|337744565|ref|YP_004638727.1| protein ClpP1 [Paenibacillus mucilaginosus KNP414]
gi|379718194|ref|YP_005310325.1| protein ClpP1 [Paenibacillus mucilaginosus 3016]
gi|386720758|ref|YP_006187083.1| protein ClpP1 [Paenibacillus mucilaginosus K02]
gi|336295754|gb|AEI38857.1| ClpP1 [Paenibacillus mucilaginosus KNP414]
gi|378566866|gb|AFC27176.1| ClpP1 [Paenibacillus mucilaginosus 3016]
gi|384087882|gb|AFH59318.1| protein ClpP1 [Paenibacillus mucilaginosus K02]
Length = 193
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
+P V+ P D+ S L ++RIIF+G IN +VA I+QL+ LA D D DI +
Sbjct: 3 FIPMVVEPDARGERAYDIYSRLLKDRIIFLGSGINDVVANSIIAQLLFLAASDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI S +AIYD M +IKP V T+C G+AAS A +LA G G R+A+PN+ +M+
Sbjct: 63 YINSPGGSITSGMAIYDTMQFIKPDVSTICVGMAASMGAFLLAAGAPGKRFALPNSEVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + + R K++ + + TGQ E++++ T+RD F+SA EA
Sbjct: 123 HQPLGGAEGQASDIEIRAKRILKMRDKLNTILSERTGQSFERIEKDTDRDNFMSAEEARA 182
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 183 YGLIDKVIE 191
>gi|302035647|ref|YP_003795969.1| ATP-dependent Clp protease proteolytic subunit clpP [Candidatus
Nitrospira defluvii]
gi|300603711|emb|CBK40042.1| ATP-dependent Clp protease, proteolytic subunit clpP [Candidatus
Nitrospira defluvii]
Length = 211
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ + A I+QL+ L D + DI +Y+N PGGS+ + L IY
Sbjct: 18 DIYSRLLKDRIIFLGAPIDDVFANLIIAQLLFLEAEDPEKDINLYINSPGGSVTAGLGIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP + T+C G AAS A +L G KG RYA+PNAR+M++QP G G ++
Sbjct: 78 DTMQYVKPAINTICLGQAASMGAFLLTAGTKGKRYALPNARVMIHQPMGGFQGQATEIDI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++ + A TGQP++K+ Q TERD F+S+ EA +GLID ++
Sbjct: 138 HAREILKIRERLNEIMAKHTGQPLDKISQDTERDYFMSSEEAKRYGLIDEVI 189
>gi|423369117|ref|ZP_17346548.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD142]
gi|401078473|gb|EJP86784.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD142]
Length = 193
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAERALEYGLIDKIF 190
>gi|383787009|ref|YP_005471578.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Fervidobacterium pennivorans DSM 9078]
gi|383109856|gb|AFG35459.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Fervidobacterium pennivorans DSM 9078]
Length = 206
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++QL+ L + D DI +Y+N PGG + + LAIY
Sbjct: 30 DIYSRLLKDRIIFLGSAIDDHVANLVVAQLLFLEAENPDKDIQLYINSPGGLVTAGLAIY 89
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G AAS AA++LA G KG R+A+PN+RIM++QP G+ G +DV+
Sbjct: 90 DTMQYVKCDVATICIGQAASMAAVLLAAGAKGKRFALPNSRIMIHQPLGGAEGTAKDVEI 149
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +H I+ + + TGQPIEK+++ T+RD F+SA EA E+G+ID ++
Sbjct: 150 LTKELLRIKHLINEILSKHTGQPIEKIEKDTDRDFFMSAQEAKEYGIIDRVI 201
>gi|298243372|ref|ZP_06967179.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
gi|297556426|gb|EFH90290.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
Length = 215
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 123/179 (68%), Gaps = 2/179 (1%)
Query: 93 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL 152
G + +L ++RII IG+PI+ MVA + I L+ L D DI +YLN PGGS+ + L
Sbjct: 37 GSYGIEDLLLKDRIILIGKPIDDMVAYQTIMLLLYLEHEDSSQDISLYLNSPGGSVTAGL 96
Query: 153 AIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ-SGS-GGHV 210
AIYD M +IKP V TVC G+A S A+++LAGG KG R+++PN+ I+++QP SG G
Sbjct: 97 AIYDTMQYIKPDVSTVCVGMAMSMASVLLAGGAKGKRFSLPNSTILIHQPLISGEIAGQA 156
Query: 211 EDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
D++ + E + +R +++ + A TGQP+E++ Q ++RD +++A +A+E+GLID +LE+
Sbjct: 157 SDIEIEAREIIRTRSELNELLAKHTGQPVERIAQDSDRDNYMTAHQAVEYGLIDEVLES 215
>gi|87124411|ref|ZP_01080260.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RS9917]
gi|86167983|gb|EAQ69241.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RS9917]
Length = 196
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G+P+ S A R ++QL+ L D D DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEAEDPDKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + K++R A +GQP+EK+Q T+RD F+S +A+
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDKLNRELAERSGQPLEKIQVDTDRDFFMSPQDAVS 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDSVID 189
>gi|255102472|ref|ZP_05331449.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-63q42]
Length = 194
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 118/188 (62%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+G +N A ++QL+ L D D DI +
Sbjct: 3 LVPVVVEQTGRGERSYDIFSRLLKDRIIFLGDQVNDATAGLIVAQLLFLEAEDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI S +AIYD M +IKP V T+C G+AAS A +LA G KG R A+PN+ IM+
Sbjct: 63 YINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRLALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + + ++ +++ TGQP+EK++ TERD F+SA EA E
Sbjct: 123 HQPLGGAQGQATDIEIHAKRILKIKETLNEIFSERTGQPLEKIKMDTERDNFMSALEAKE 182
Query: 260 FGLIDGIL 267
+GLID +
Sbjct: 183 YGLIDEVF 190
>gi|124025671|ref|YP_001014787.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. NATL1A]
gi|123960739|gb|ABM75522.1| Clp protease subunit [Prochlorococcus marinus str. NATL1A]
Length = 205
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 127/205 (61%), Gaps = 13/205 (6%)
Query: 67 STEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAI 122
T+H Y+ ++P V+ G D+ S L R RI+F+G+P+ S A R +
Sbjct: 2 KTDHYYR---------SMIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIV 52
Query: 123 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 182
+QL+ L D D DI +Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +L
Sbjct: 53 AQLLFLEADDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLC 112
Query: 183 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV 242
G KG R ++ ++RIM++QP G+ G D++ Q +E + + K+++ + TGQPIE++
Sbjct: 113 AGAKGKRSSLLHSRIMIHQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQPIERI 172
Query: 243 QQYTERDRFLSAAEAMEFGLIDGIL 267
++ T+RD ++S +EA+E+G+ID +
Sbjct: 173 REDTDRDFYMSPSEAIEYGIIDNVF 197
>gi|17231175|ref|NP_487723.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
7120]
gi|75909809|ref|YP_324105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
variabilis ATCC 29413]
gi|21759070|sp|Q8YQX8.1|CLPP2_ANASP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|17132816|dbj|BAB75382.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
7120]
gi|75703534|gb|ABA23210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
variabilis ATCC 29413]
Length = 232
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 124/191 (64%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 88
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G KG R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMI 148
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++++ A TGQP+E+++ T+RD F+SA EA
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKN 208
Query: 260 FGLIDGILETE 270
+GLID ++ +
Sbjct: 209 YGLIDQVISRQ 219
>gi|224074500|ref|XP_002304381.1| predicted protein [Populus trichocarpa]
gi|222841813|gb|EEE79360.1| predicted protein [Populus trichocarpa]
Length = 220
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 119/179 (66%)
Query: 92 GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV 151
G D +L R RI+F+G I+ VA ISQL+ L D DI +++NCPGGS+ +
Sbjct: 3 GAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNCPGGSLSAS 62
Query: 152 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVE 211
+AIYD + ++ V T+ G++AS A+IIL GG KG R+AMPN RIM++QP G+ G
Sbjct: 63 MAIYDVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 122
Query: 212 DVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
DV+ Q E + +++ I R+ + FT + +E+VQ+ +RDR++S EA+E+G+IDG+++ +
Sbjct: 123 DVEIQAREIMHNKNNIIRIVSGFTSRTVEQVQKDMDRDRYMSPIEAVEYGIIDGVIDRD 181
>gi|163942836|ref|YP_001647720.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
weihenstephanensis KBAB4]
gi|228993855|ref|ZP_04153759.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
pseudomycoides DSM 12442]
gi|228999881|ref|ZP_04159453.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
Rock3-17]
gi|229007435|ref|ZP_04165032.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
Rock1-4]
gi|229062796|ref|ZP_04200101.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH603]
gi|229135952|ref|ZP_04264713.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-ST196]
gi|229169852|ref|ZP_04297548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH621]
gi|423388590|ref|ZP_17365816.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1X1-3]
gi|423400026|ref|ZP_17377199.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-2]
gi|423416963|ref|ZP_17394052.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3X2-1]
gi|423451604|ref|ZP_17428457.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5X1-1]
gi|423462074|ref|ZP_17438870.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5X2-1]
gi|423479281|ref|ZP_17455996.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6X1-1]
gi|423484826|ref|ZP_17461515.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6X1-2]
gi|423513410|ref|ZP_17489940.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA2-1]
gi|423519803|ref|ZP_17496284.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA2-4]
gi|423595672|ref|ZP_17571702.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD048]
gi|423670666|ref|ZP_17645695.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM034]
gi|423673107|ref|ZP_17648046.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM062]
gi|163865033|gb|ABY46092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
weihenstephanensis KBAB4]
gi|228613566|gb|EEK70695.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH621]
gi|228647494|gb|EEL03568.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-ST196]
gi|228716556|gb|EEL68259.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH603]
gi|228753823|gb|EEM03264.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
Rock1-4]
gi|228759823|gb|EEM08797.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
Rock3-17]
gi|228765911|gb|EEM14561.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
pseudomycoides DSM 12442]
gi|401108381|gb|EJQ16312.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3X2-1]
gi|401133929|gb|EJQ41552.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5X2-1]
gi|401136677|gb|EJQ44263.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6X1-2]
gi|401145312|gb|EJQ52838.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5X1-1]
gi|401157944|gb|EJQ65340.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA2-4]
gi|401221566|gb|EJR28180.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD048]
gi|401294953|gb|EJS00578.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM034]
gi|401311207|gb|EJS16515.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM062]
gi|401642665|gb|EJS60371.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1X1-3]
gi|401656653|gb|EJS74168.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-2]
gi|402425585|gb|EJV57731.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6X1-1]
gi|402445654|gb|EJV77523.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA2-1]
Length = 193
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAERALEYGLIDKIF 190
>gi|357112555|ref|XP_003558074.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5,
chloroplastic-like [Brachypodium distachyon]
Length = 282
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G P+ +A ++QL+ L ID + DI+MY+N PGGS+ + +AI+D M
Sbjct: 100 SQLFQHRIIRCGGPVEDDMANVIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTM 159
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 160 KHIRPDVSTVCIGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 219
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQP++K+ T+RD F+SA EA E+GLIDG++
Sbjct: 220 EMLHHKANLNGYLAYHTGQPLDKINVDTDRDFFMSAKEAKEYGLIDGVI 268
>gi|295112117|emb|CBL28867.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes
bacterium SGP1]
Length = 195
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G + VA ++QL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 21 DIYSRLLKDRIVFLGTQVMDDVANSIVAQLLFLESEDPDKDIHLYINSPGGSVTAGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS AAI+L+GG +G R A+PNA +M++QP G+ G D++
Sbjct: 81 DTMQYIKSPVSTICVGMAASMAAILLSGGARGKRLALPNAEVMIHQPLGGTSGQASDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ +R +++ + A TGQ +EKV Q T+RD F++A EA+++GLID I+E+
Sbjct: 141 HARNILNTRKRMNAILARHTGQDVEKVAQDTDRDNFMTAQEALDYGLIDRIIES 194
>gi|300865787|ref|ZP_07110541.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
sp. PCC 6506]
gi|300336200|emb|CBN55696.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
sp. PCC 6506]
Length = 203
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 125/189 (66%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RI+F+GQ + S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVTSDLANLIVAQLLFLDAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ I+P+V T+C G+AAS A +L+ G KG R +P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNHIRPEVSTICLGLAASMGAFLLSAGAKGKRMTLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ AA TGQP+ ++++ TERD F+SAAEA E
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEHLAAHTGQPLSRIEEDTERDFFMSAAEATE 180
Query: 260 FGLIDGILE 268
+GL+D +++
Sbjct: 181 YGLVDLVID 189
>gi|87302740|ref|ZP_01085551.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 5701]
gi|87282623|gb|EAQ74581.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 5701]
Length = 196
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ + A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEDSGRGERAFDIYSRLLRERIIFLGEPVTAESANRVVAQLLFLEAEDPEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLTAGAKGKRSSLHHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + K++R + TGQP++++Q T+RD F+S AEA+
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKDKLNRELSDRTGQPLDRIQIDTDRDFFMSPAEAVS 180
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 181 YGLIDKVIE 189
>gi|86610014|ref|YP_478776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. JA-2-3B'a(2-13)]
gi|115311349|sp|Q2JIP1.1|CLPP2_SYNJB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|86558556|gb|ABD03513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. JA-2-3B'a(2-13)]
Length = 200
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 119/173 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R+RIIF+G ++ +A ++Q++ L + D + DI +Y+N PGGS+Y+ +AI
Sbjct: 16 FDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAI 75
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C G+AAS A +LAGG KG R A+P+ARIM++QP G+ G D++
Sbjct: 76 YDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIE 135
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + ++ ++ + A TGQP+E++++ T+RD F++ +A E+GLID ++
Sbjct: 136 IQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188
>gi|114152202|sp|Q2L256.2|CLPP_BORA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 201
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AI+
Sbjct: 24 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIF 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G+KG R+++PN+RIM++QP G+ G D++
Sbjct: 84 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGQASDIQI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQ +E++ TERD F+SA +A+ +GL+D +L
Sbjct: 144 QAKEILDLRERLNRILAENTGQSMERIAIDTERDTFMSAEDALSYGLVDKVL 195
>gi|293606140|ref|ZP_06688505.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii ATCC 43553]
gi|292815595|gb|EFF74711.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii ATCC 43553]
Length = 217
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 118/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIF 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++R+ A TGQ +E++ TERD F+SA +A+ +GL+D ++ +
Sbjct: 160 QAREILDLRERLNRILADNTGQSMERIGLDTERDNFMSAEDAVSYGLVDKVMSS 213
>gi|120599414|ref|YP_963988.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
W3-18-1]
gi|146292590|ref|YP_001183014.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
putrefaciens CN-32]
gi|386313267|ref|YP_006009432.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens 200]
gi|166214710|sp|A4Y5I2.1|CLPP_SHEPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214712|sp|A1RL89.1|CLPP_SHESW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|120559507|gb|ABM25434.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
W3-18-1]
gi|145564280|gb|ABP75215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens CN-32]
gi|319425892|gb|ADV53966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens 200]
Length = 202
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 27 DIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +HK++ M A TGQP+E +++ T+RD F+SA +A+E+GL+D ++
Sbjct: 147 HAQEILGIKHKLNLMLAEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDSVM 198
>gi|242040043|ref|XP_002467416.1| hypothetical protein SORBIDRAFT_01g027680 [Sorghum bicolor]
gi|241921270|gb|EER94414.1| hypothetical protein SORBIDRAFT_01g027680 [Sorghum bicolor]
Length = 289
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 118/175 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ +L R RI+F+G I +A +SQL+ L ID D+DI +++N PGGS+ + +AIY
Sbjct: 76 DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++ V T+ G+A S A+IIL GG KG R+AMPN RIM++QP G+ G DV+
Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 195
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ + R+ + FTG+ +E+V++ +RDR++ EA+++GLIDG+++ +
Sbjct: 196 QAKEILTNKRNVIRIVSGFTGRTLEQVEKDIDRDRYMGPLEAVDYGLIDGVIDGD 250
>gi|427703523|ref|YP_007046745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium
gracile PCC 6307]
gi|427346691|gb|AFY29404.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium
gracile PCC 6307]
Length = 249
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 115/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+G I+ VA ++QL+ L D + DI +Y+N PGGS+ S LAI
Sbjct: 68 FDIYSRLLRERIIFLGTGIDDQVADSLVAQLLFLEAEDPEKDIQIYINSPGGSVTSGLAI 127
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M + P V T+C+G+AAS A +L GG G R A+PNARIM++QP G+ G D++
Sbjct: 128 YDTMQQVAPDVVTICYGLAASMGAFLLTGGAPGKRMALPNARIMIHQPLGGAQGQAVDIE 187
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + ++ + A TGQP++K+ + T+RD FLS AEA+E+GLID +++
Sbjct: 188 IQAREILFLKDTLNGLMAEHTGQPLDKIAEDTDRDYFLSPAEAVEYGLIDRVVD 241
>gi|55980584|ref|YP_143881.1| ATP-dependent Clp protease proteolytic subunit [Thermus
thermophilus HB8]
gi|381190341|ref|ZP_09897864.1| ATP-dependent Clp protease proteolytic subunit [Thermus sp. RL]
gi|384430811|ref|YP_005640171.1| ATP-dependent Clp protease proteolytic subunit [Thermus
thermophilus SG0.5JP17-16]
gi|386360877|ref|YP_006059122.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
thermophilus JL-18]
gi|60389682|sp|Q72L15.2|CLPP_THET2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460210|sp|Q5SKM8.1|CLPP_THET8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|55771997|dbj|BAD70438.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
thermophilus HB8]
gi|333966279|gb|AEG33044.1| ATP-dependent Clp protease proteolytic subunit [Thermus
thermophilus SG0.5JP17-16]
gi|380451934|gb|EIA39535.1| ATP-dependent Clp protease proteolytic subunit [Thermus sp. RL]
gi|383509904|gb|AFH39336.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
thermophilus JL-18]
Length = 194
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 121/175 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVDAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P+A++M++QP G G D+
Sbjct: 78 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ ++ + A TGQP+EKV++ T+RD +LSA EA+E+GLID ++ E
Sbjct: 138 QAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVVTRE 192
>gi|337288342|ref|YP_004627814.1| ATP-dependent Clp protease proteolytic subunit
[Thermodesulfobacterium sp. OPB45]
gi|334902080|gb|AEH22886.1| ATP-dependent Clp protease proteolytic subunit
[Thermodesulfobacterium geofontis OPF15]
Length = 194
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L + RI+FIG I+ VA I+QL+ L D D DI++Y
Sbjct: 5 IPIVIEQTGRTERAFDIYSRLLKERIVFIGTTIDENVANLVIAQLLYLEAEDPDKDIMLY 64
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGG + + LAIYD + +IKP V T+C G AAS AA++LA G KG RYA+ ++RIML+
Sbjct: 65 INSPGGLVTAGLAIYDTIQYIKPDVCTICVGQAASMAAVLLAAGTKGKRYALRHSRIMLH 124
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G +V+ Q E + R I + + TGQP EK++Q TERD ++SA EA+E+
Sbjct: 125 QPIGAFQGQATEVEIQAKEILRLREIITEILSQHTGQPKEKIKQDTERDFYMSAEEALEY 184
Query: 261 GLIDGILET 269
G+ID IL T
Sbjct: 185 GIIDKILIT 193
>gi|124026830|ref|YP_001015945.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
NATL1A]
gi|123961898|gb|ABM76681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
NATL1A]
Length = 218
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P ++P V+ G D+ S L R RIIF+G +N VA ++Q++ L D + DI
Sbjct: 23 PGVLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDI 82
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PN+RI
Sbjct: 83 QLYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRI 142
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G +++ Q E + + ++ + A TGQ I+K+ + T+RD FLS EA
Sbjct: 143 MIHQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEA 202
Query: 258 MEFGLIDGIL 267
+E+GLID ++
Sbjct: 203 VEYGLIDKVV 212
>gi|254432163|ref|ZP_05045866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
PCC 7001]
gi|197626616|gb|EDY39175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
PCC 7001]
Length = 196
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G+P+ + A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTAESANRIVAQLLFLEAEDPEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLTHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + K+++ A TGQP+ ++++ T+RD F+S AEAM
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKQKLNQELADRTGQPMTRIEEDTDRDFFMSPAEAMA 180
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 181 YGLIDKVIE 189
>gi|124266485|ref|YP_001020489.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
petroleiphilum PM1]
gi|189082491|sp|A2SFB5.1|CLPP_METPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|124259260|gb|ABM94254.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
petroleiphilum PM1]
Length = 202
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 123/194 (63%), Gaps = 4/194 (2%)
Query: 78 KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
+ N ++P V+ G D+ S L R R+IF+ P+N A ++QL+ L + +
Sbjct: 5 ETQNLGMVPVVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENP 64
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
D DI +Y+N PGGS+ + L+I+D M +IKP V T+C G+AAS A +LA G KG R+A+P
Sbjct: 65 DKDISLYINSPGGSVSAGLSIFDTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALP 124
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
N+R+M++QP G+ G D++ Q E + R ++ + A TGQP+EK++ +ERD F+S
Sbjct: 125 NSRVMIHQPSGGAQGQATDIEIQAREILKLRESLNGILAERTGQPLEKIRADSERDYFMS 184
Query: 254 AAEAMEFGLIDGIL 267
A EA +GLID ++
Sbjct: 185 AEEATGYGLIDKVI 198
>gi|326505348|dbj|BAK03061.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 284
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 116/169 (68%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G P+ +A ++QL+ L +D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 102 SQLFQHRIIRCGGPVEDDMANVIVAQLLYLDAVDPNKDIIMYVNSPGGSVTAGMAIFDTM 161
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 162 KHIRPDVSTVCIGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 221
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQP++K+ T+RD F+SA EA E+GLIDG++
Sbjct: 222 EMLHHKANLNGYLAYHTGQPLDKINVDTDRDFFMSAKEAKEYGLIDGVI 270
>gi|300866516|ref|ZP_07111206.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
sp. PCC 6506]
gi|300335473|emb|CBN56366.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
sp. PCC 6506]
Length = 229
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L D + DI +
Sbjct: 26 VVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQL 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M ++P V T+C+G+AAS A ++A G G R ++P++RIM+
Sbjct: 86 YINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMGAFLMAAGAAGKRMSLPSSRIMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++ + A TGQP+E+++ TERD F+SAAEA +
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYHKRKLNELLAHHTGQPLERIEADTERDFFMSAAEAKD 205
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 206 YGLVDQVI 213
>gi|116071740|ref|ZP_01469008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. BL107]
gi|116065363|gb|EAU71121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. BL107]
Length = 224
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 123/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 23 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 82
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 83 QIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 142
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP+ K+ + T+RD FLS AEA
Sbjct: 143 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLAKISEDTDRDYFLSPAEA 202
Query: 258 MEFGLIDGILET 269
+E+GLID ++++
Sbjct: 203 VEYGLIDRVVDS 214
>gi|187477999|ref|YP_786023.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
197N]
gi|115422585|emb|CAJ49110.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
197N]
Length = 217
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIF 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G+KG R+++PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQ +E++ TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAKEILDLRERLNRILAENTGQSMERIAIDTERDTFMSAEDALSYGLVDKVL 211
>gi|398805269|ref|ZP_10564248.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
sp. CF318]
gi|398092050|gb|EJL82472.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
sp. CF318]
Length = 218
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+ + +AIY
Sbjct: 43 DIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIY 102
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L+ G KG R+++PN+R+M++QP G+ G D++
Sbjct: 103 DTMQFIKPDVSTLCVGMAASMGAFLLSAGAKGKRFSLPNSRVMIHQPSGGAQGQATDIEI 162
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +R +++R+ AA TGQPIEK+++ TERD F+ A +A E+GL+D ++
Sbjct: 163 HARDILKTRDQLNRILAANTGQPIEKIERDTERDYFMFAEDAKEYGLVDQVI 214
>gi|345874540|ref|ZP_08826351.1| endopeptidase [Neisseria weaveri LMG 5135]
gi|417957883|ref|ZP_12600801.1| endopeptidase [Neisseria weaveri ATCC 51223]
gi|343967629|gb|EGV35872.1| endopeptidase [Neisseria weaveri ATCC 51223]
gi|343970451|gb|EGV38628.1| endopeptidase [Neisseria weaveri LMG 5135]
Length = 207
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Query: 80 DNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDA 135
+N L+P V+ G D+ S L + RIIF+ P+N A ++QL+ L + + D
Sbjct: 6 NNSYLVPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQLLFLESENPDK 65
Query: 136 DILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 195
DI +Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L+ G KG R+A+PN+
Sbjct: 66 DIFLYINSPGGSVTAGMSIYDTMKFIKPDVSTLCLGQAASMGAFLLSAGTKGKRFALPNS 125
Query: 196 RIMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
RIM++QP G GG D++ E + + K++R+ A +GQ + KV++ T+RD ++S
Sbjct: 126 RIMIHQPLISGGLGGQASDIEIHARELIKIKEKLNRLLAEHSGQDLAKVERDTDRDNYMS 185
Query: 254 AAEAMEFGLIDGIL 267
A EA E+GLID +L
Sbjct: 186 ADEAQEYGLIDQVL 199
>gi|359796110|ref|ZP_09298715.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
arsenitoxydans SY8]
gi|359365796|gb|EHK67488.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
arsenitoxydans SY8]
Length = 217
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIF 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ + TGQ +E+++ TERD F+SA +A+ +GL+D ++
Sbjct: 160 QAREILDLRERLNRILSQNTGQSMERIELDTERDNFMSAEDAVSYGLVDKVM 211
>gi|318041532|ref|ZP_07973488.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CB0101]
Length = 196
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSESANRIVAQLLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLTHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + K+++ A TGQP+ ++++ T+RD F+S AEA E
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKKKLNQELADRTGQPLSRIEEDTDRDFFMSPAEAAE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDKVID 189
>gi|23099911|ref|NP_693377.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus
iheyensis HTE831]
gi|60389793|sp|Q8ENM5.1|CLPP_OCEIH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|22778142|dbj|BAC14412.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus
iheyensis HTE831]
Length = 193
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ V+ ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIILLGSGIDDNVSNSIVAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +L GEKG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMNFIKPNVSTICIGMAASMGAFLLTAGEKGKRFALPNSEIMIHQPLGGTQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +++ + A TGQPIE +++ TERD F++A +++E+GLID ILE
Sbjct: 139 HAKRIIDIKRRMNEIMAEKTGQPIEVIERDTERDNFMTADQSVEYGLIDKILE 191
>gi|228474429|ref|ZP_04059164.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus hominis SK119]
gi|314936932|ref|ZP_07844279.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus hominis subsp. hominis C80]
gi|418619476|ref|ZP_13182304.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus hominis VCU122]
gi|228271788|gb|EEK13135.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus hominis SK119]
gi|313655551|gb|EFS19296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus hominis subsp. hominis C80]
gi|374824522|gb|EHR88480.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus hominis VCU122]
Length = 195
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGTKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ A TGQ IE +Q+ T+RD FL+A EA E+GLID +++ E
Sbjct: 139 AANHILKTREKLNRILAERTGQNIETIQKDTDRDNFLTADEAKEYGLIDHVMQPE 193
>gi|311031871|ref|ZP_07709961.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. m3-13]
Length = 195
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMNFIKPNVSTICVGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++ + + TGQPIE + + T+RD F++A A+E+GLID ++
Sbjct: 139 AAKRILFLREKLNTILSEQTGQPIEVISRDTDRDNFMTAERALEYGLIDKVM 190
>gi|440684999|ref|YP_007159794.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
cylindrica PCC 7122]
gi|428682118|gb|AFZ60884.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
cylindrica PCC 7122]
Length = 232
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 123/191 (64%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ +VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDVVANSIVAQLLFLDAEDSEKDIQL 88
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTSGAAGKRMSLPDSRIMI 148
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++++ A TGQP+EK++ TERD F+SA EA
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKGNLNQLMAKHTGQPLEKIEADTERDFFMSAEEAKN 208
Query: 260 FGLIDGILETE 270
+GLID ++ +
Sbjct: 209 YGLIDQVISRQ 219
>gi|221194696|ref|ZP_03567753.1| Clp protease [Atopobium rimae ATCC 49626]
gi|221185600|gb|EEE17990.1| Clp protease [Atopobium rimae ATCC 49626]
Length = 206
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 125/193 (64%), Gaps = 4/193 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N PL+P V+ TP G D+ S L +RI+F+G+P+ A I+QL+ L + D + D
Sbjct: 6 NTPLIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEPVTRDSANLVIAQLLHLESQDPEKD 65
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y++ PGG +Y+ L I D M++IKP V T+C G+AAS AA++LA G KG R A+PN+
Sbjct: 66 ISLYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMAAVLLAAGAKGKRLALPNSM 125
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
++++QP SG G D++ +E R ++ + + +TGQP+EKV TERD ++ A E
Sbjct: 126 VLIHQPSSGVQGQQTDIQIVADETKWLRQHLNELLSEYTGQPLEKVNVDTERDNYMRAQE 185
Query: 257 AMEFGLIDGILET 269
A ++GL+D ++ +
Sbjct: 186 AADYGLVDRVISS 198
>gi|148238406|ref|YP_001223793.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp.
WH 7803]
gi|147846945|emb|CAK22496.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
WH 7803]
Length = 229
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 125/192 (65%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P ++P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 28 PGVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 87
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 88 QVYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 147
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP++K+ + T+RD F+S A+A
Sbjct: 148 MIHQPMGGAQGQAVDIEIQAKEILFLKETLNGLMAEHTGQPLDKIAEDTDRDNFMSPAQA 207
Query: 258 MEFGLIDGILET 269
+++GLID ++++
Sbjct: 208 VDYGLIDRVVDS 219
>gi|56201842|dbj|BAD73292.1| putative ATP-dependent Clp protease, proteolytic subunit [Oryza
sativa Japonica Group]
gi|125526129|gb|EAY74243.1| hypothetical protein OsI_02123 [Oryza sativa Indica Group]
gi|125570557|gb|EAZ12072.1| hypothetical protein OsJ_01953 [Oryza sativa Japonica Group]
Length = 308
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 118/174 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G P++ M A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 70 LDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGV 129
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M + K + TVCFG+AAS A +LA G KG R+ MPNARIM++QP G+GG V ++
Sbjct: 130 YDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMG 189
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q+ E + + KI+++ + TG+P E++ + T+ D F+S EA ++G++D +++
Sbjct: 190 LQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVID 243
>gi|289551370|ref|YP_003472274.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
lugdunensis HKU09-01]
gi|315658877|ref|ZP_07911744.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
lugdunensis M23590]
gi|418415755|ref|ZP_12988958.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|418636869|ref|ZP_13199207.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus lugdunensis VCU139]
gi|289180901|gb|ADC88146.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
lugdunensis HKU09-01]
gi|315496001|gb|EFU84329.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
lugdunensis M23590]
gi|374840430|gb|EHS03924.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus lugdunensis VCU139]
gi|410873613|gb|EKS21547.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 195
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ A TGQ IE++Q+ T+RD FL+A EA +GLID ++E E
Sbjct: 139 AANHILKTREKLNRILAERTGQSIEQIQKDTDRDNFLTAEEAKAYGLIDEVMEPE 193
>gi|115311350|sp|Q3M726.2|CLPP3_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
Length = 214
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 11 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G KG R ++P++RIM+
Sbjct: 71 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++++ A TGQP+E+++ T+RD F+SA EA
Sbjct: 131 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKN 190
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 191 YGLIDQVI 198
>gi|86605879|ref|YP_474642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. JA-3-3Ab]
gi|115311348|sp|Q2JV68.1|CLPP2_SYNJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|86554421|gb|ABC99379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. JA-3-3Ab]
Length = 200
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 119/173 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R+RIIF+G ++ +A ++Q++ L + D + DI +Y+N PGGS+Y+ +AI
Sbjct: 16 FDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAI 75
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C G+AAS A +LAGG KG R A+P+ARIM++QP G+ G D++
Sbjct: 76 YDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIE 135
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + ++ ++ + A TGQP+E++++ T+RD F++ +A E+GLID ++
Sbjct: 136 IQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVI 188
>gi|308050308|ref|YP_003913874.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
balearica DSM 9799]
gi|307632498|gb|ADN76800.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
balearica DSM 9799]
Length = 207
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 28 DIYSRLLKERVIFLTGPVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGG KG R+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPDVSTVCMGQAASMGAFLLAGGAKGKRHVLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +HK++ + A TGQP+E +++ T+RD F+SA +A+E+GL+D +L
Sbjct: 148 HAQEILGIKHKLNLLLAEHTGQPMEVIERDTDRDNFMSATDAVEYGLVDSVL 199
>gi|150020876|ref|YP_001306230.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
melanesiensis BI429]
gi|149793397|gb|ABR30845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
melanesiensis BI429]
Length = 202
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 121/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I+ VA ++QL+ L D D DI +Y+N PGGS+ + LAIY
Sbjct: 24 DIYSRLLKDRIVFLGSAIDDHVANLIVAQLLFLEAEDPDKDIQLYINSPGGSVSAGLAIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G AAS A++LAGG KG R+++PN+RIM++QP G+ G +DV+
Sbjct: 84 DTMQYVKCDVTTICIGQAASMGAVLLAGGTKGKRFSLPNSRIMIHQPLGGAEGPAKDVEI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++KI+ + + TGQPIE++++ T+RD F++ +A+E+GLID +++
Sbjct: 144 MTKELLRIKNKINEILSLHTGQPIERIERDTDRDFFMTPEDALEYGLIDKVIK 196
>gi|404417286|ref|ZP_10999088.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
arlettae CVD059]
gi|403490299|gb|EJY95842.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
arlettae CVD059]
Length = 194
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +L+ G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLSAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++++ A TGQ IEK+++ T+RD FLSA EA E+GLID ++E E
Sbjct: 139 AANHILKTRAKLNKILAERTGQSIEKIEKDTDRDNFLSADEAKEYGLIDHVMEPE 193
>gi|115436866|ref|NP_001043155.1| Os01g0507900 [Oryza sativa Japonica Group]
gi|113532686|dbj|BAF05069.1| Os01g0507900 [Oryza sativa Japonica Group]
gi|215734851|dbj|BAG95573.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 314
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 118/174 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G P++ M A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 76 LDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGV 135
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M + K + TVCFG+AAS A +LA G KG R+ MPNARIM++QP G+GG V ++
Sbjct: 136 YDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMG 195
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q+ E + + KI+++ + TG+P E++ + T+ D F+S EA ++G++D +++
Sbjct: 196 LQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVID 249
>gi|46198558|ref|YP_004225.1| ATP-dependent Clp protease proteolytic subunit [Thermus
thermophilus HB27]
gi|46196180|gb|AAS80598.1| ATP-dependent clp protease proteolytic subunit [Thermus
thermophilus HB27]
Length = 212
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 121/175 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 36 DIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVDAGLAIY 95
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P+A++M++QP G G D+
Sbjct: 96 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAI 155
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ ++ + A TGQP+EKV++ T+RD +LSA EA+E+GLID ++ E
Sbjct: 156 QAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVVTRE 210
>gi|291277236|ref|YP_003517008.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
mustelae 12198]
gi|290964430|emb|CBG40280.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
mustelae 12198]
Length = 195
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ + IN MVA ++QL+ L D DI Y+N PGG++ S +IY
Sbjct: 19 DIYSRLLKDRIVLLSGEINDMVASSIVAQLLFLEAEDAQKDIYFYINSPGGAVTSAFSIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G AAS A++L+ G KG RY++PN+RIM++QP G+ G D++
Sbjct: 79 DTMHYIRPDVATICVGQAASAGALLLSSGAKGKRYSLPNSRIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q NE + + ++ + A+ TGQ ++KV Q TERD F+SA EA ++GL+D +LE
Sbjct: 139 QANEILRLKKILNEILASNTGQSLKKVSQDTERDFFMSAMEAQKYGLVDKVLE 191
>gi|398815689|ref|ZP_10574354.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
gi|398034174|gb|EJL27450.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
Length = 193
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ +A ++QL+ L D D DI +Y+N PGGS+ + +AIY
Sbjct: 18 DIYSRLLKDRIILLGTEIDDEIANLVVAQLLFLQAEDPDKDISLYINSPGGSVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PNA +M++QP G G ED++
Sbjct: 78 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGVRGQAEDIRI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ +++ + + TGQP E+V+Q T+RD F+SA EA +GLID I+E
Sbjct: 138 HAEWIMKTKRQLNEILSERTGQPYERVEQDTDRDNFMSAEEAKAYGLIDSIIE 190
>gi|375306341|ref|ZP_09771639.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus sp.
Aloe-11]
gi|375081594|gb|EHS59804.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus sp.
Aloe-11]
Length = 198
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ + R K++R+ A TGQP+E++++ T+RD F+SA +A E+G+ID +L +
Sbjct: 139 RARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDAKEYGIIDKVLTS 192
>gi|88705172|ref|ZP_01102884.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
litoralis KT71]
gi|88700867|gb|EAQ97974.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
litoralis KT71]
Length = 206
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R++F+ + +A ++QL+ L + + D DI +Y+N PGGS+ + L+IY
Sbjct: 26 DIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGLSIY 85
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP + T+C G AAS A +L+GG KG RY +PNAR M++QP G+ G D+
Sbjct: 86 DTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNARTMIHQPSGGAQGQATDIDI 145
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E +I R +++R+ A TGQP+E +++ TERDRF+ A ++ E+GL+D ++
Sbjct: 146 QAKEILIIRERLNRLMAEHTGQPLEVIERDTERDRFMDAEQSKEYGLVDEVV 197
>gi|299471219|emb|CBN79074.1| chloroplast clp protease P [Ectocarpus siliculosus]
Length = 292
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Query: 82 PPL-MPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
PP+ MP V G +D+ S L ++RI+ +GQ +N VA ++QL+ LA D D DI +Y
Sbjct: 87 PPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLY 146
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+ + +AIYD M ++ V TVCFG AAS A +L G KG R ++PNARIM++
Sbjct: 147 INSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIH 206
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G D++ Q E + R ++ A + QP +K+Q +RD F++ EAM++
Sbjct: 207 QPLGGAQGQAADIEIQAKEILFIRSLLNSYMAEYCDQPADKIQDDCDRDFFMTPEEAMDY 266
Query: 261 GLIDGILETE 270
GLID ++ T+
Sbjct: 267 GLIDEVVTTK 276
>gi|126700971|ref|YP_001089868.1| ATP-dependent Clp protease proteolytic subunit 2 [Clostridium
difficile 630]
gi|254976933|ref|ZP_05273405.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-66c26]
gi|255094319|ref|ZP_05323797.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CIP 107932]
gi|255102503|ref|ZP_05331480.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-63q42]
gi|255308399|ref|ZP_05352570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile ATCC 43255]
gi|255316073|ref|ZP_05357656.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-76w55]
gi|255518732|ref|ZP_05386408.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-97b34]
gi|255651852|ref|ZP_05398754.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-37x79]
gi|260684879|ref|YP_003216164.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CD196]
gi|260688537|ref|YP_003219671.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile R20291]
gi|306521636|ref|ZP_07407983.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-32g58]
gi|384362546|ref|YP_006200398.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile BI1]
gi|423089882|ref|ZP_17078228.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 70-100-2010]
gi|115252408|emb|CAJ70250.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
2) [Clostridium difficile 630]
gi|260211042|emb|CBA66381.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CD196]
gi|260214554|emb|CBE07092.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile R20291]
gi|357557468|gb|EHJ39008.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 70-100-2010]
Length = 194
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 125/188 (66%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIFIG+ IN +A ++QL+ L + D D+DI++
Sbjct: 3 LVPHVIEQTGQGERSYDIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDIII 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS S AIYD M++++ V T+C G+AAS +A +LAGG G R A+PN+ IM+
Sbjct: 63 YINSPGGSATSGFAIYDTMNYVRCDVSTICIGMAASMSAFLLAGGTHGKRCALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G DVK V+ + + ++D++ + TG+ IE +++ T+RD F++A EA E
Sbjct: 123 HQPMGGAKGQATDVKIAVDNILKIKERLDKILSENTGKSIEDIRRDTDRDNFMTALEAKE 182
Query: 260 FGLIDGIL 267
+GLID I+
Sbjct: 183 YGLIDYIM 190
>gi|254514393|ref|ZP_05126454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR5-3]
gi|219676636|gb|EED33001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR5-3]
Length = 213
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R++F+ + +A ++QL+ L + + D DI +Y+N PGGS+ + L+IY
Sbjct: 33 DIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGLSIY 92
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP + T+C G AAS A +L+GG KG RY +PNAR M++QP G+ G D+
Sbjct: 93 DTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNARTMIHQPSGGAQGQATDIDI 152
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E +I R +++R+ A TGQP+E +++ TERDRF+ A ++ E+GL+D ++
Sbjct: 153 QAKEILIIRERLNRLMAEHTGQPLEVIERDTERDRFMDAEQSKEYGLVDEVV 204
>gi|251797042|ref|YP_003011773.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
gi|247544668|gb|ACT01687.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
Length = 194
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I+ VA ++QL+ LA D D +I +Y+N PGGS + AIY
Sbjct: 20 DIYSRLLKDRIVFLGSAIDDQVANSIVAQLLFLAAEDPDKEISLYINSPGGSTTAGFAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS AAI+L G KG R+A+P++ +M++QP G+ G D+
Sbjct: 80 DTMQYIKPEVHTICVGMAASFAAILLLSGAKGKRFALPSSEVMIHQPHGGAQGQASDIAI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ +R +++R+ A TGQP+EK+++ +RD FLSA EA+++G+ID ++ T
Sbjct: 140 SAKRILDTRARLNRIAADRTGQPLEKIEKDMDRDYFLSAQEALDYGIIDQVVHT 193
>gi|345531825|pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
gi|345531826|pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
gi|345531827|pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
gi|345531828|pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
gi|345531829|pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
gi|345531830|pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
gi|345531831|pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
gi|345531832|pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531833|pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531834|pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531835|pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531836|pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531837|pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531838|pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531839|pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531840|pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531841|pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531842|pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531843|pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531844|pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
gi|345531845|pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
Length = 197
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 21 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 81 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
N + +R K++R+ + TGQ IEK+Q+ T+RD FL+A EA E+GLID ++
Sbjct: 141 AANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 192
>gi|418531531|ref|ZP_13097445.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
testosteroni ATCC 11996]
gi|371451485|gb|EHN64523.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
testosteroni ATCC 11996]
Length = 194
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI
Sbjct: 3 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDISF 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AI+D M++IKP V T+C G+AAS A +L+ G KG RYA+PNA++M+
Sbjct: 63 YINSPGGSVTAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLSAGAKGKRYALPNAQVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ E + +R +++++ A TGQP+EK+Q TERD FLSA EA E
Sbjct: 123 HQPLGGARGQATEIEIHAREIIKTRERLNKILAERTGQPLEKIQNDTERDYFLSADEAKE 182
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 183 YGLVDQVI 190
>gi|113953920|ref|YP_730624.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CC9311]
gi|113881271|gb|ABI46229.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. CC9311]
Length = 196
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ S A R ++QL+ L D + +I +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKEIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YVNSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + +++ A TGQP++K+Q T+RD F+S +AME
Sbjct: 121 HQPLGGASGQASDIRIQADEILFLKDRLNHELADRTGQPLDKIQADTDRDFFMSPQQAME 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDNVID 189
>gi|308067009|ref|YP_003868614.1| ATP-dependent Clp protease proteolytic subunit(endopeptidase Clp)
[Paenibacillus polymyxa E681]
gi|305856288|gb|ADM68076.1| ATP-dependent Clp protease proteolytic subunit(Endopeptidase Clp)
[Paenibacillus polymyxa E681]
Length = 193
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 14 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYINSPGGSITAGMAIF 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIEI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ + R K++R+ A TGQP+E++++ T+RD F+SA +A E+G+ID +L +
Sbjct: 134 RARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDAKEYGIIDKVLTS 187
>gi|333361419|pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361420|pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361421|pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361422|pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361423|pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361424|pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361425|pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361426|pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361427|pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361428|pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361429|pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361430|pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361431|pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|333361432|pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
gi|374977802|pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977803|pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977804|pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977805|pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977806|pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977807|pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977808|pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977809|pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977810|pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977811|pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977812|pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977813|pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977814|pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
gi|374977815|pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
Length = 203
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL--ETEY 271
N + +R K++R+ + TGQ IEK+Q+ T+RD FL+A EA E+GLID ++ ET++
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETKW 196
>gi|421484311|ref|ZP_15931882.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii HLE]
gi|400197520|gb|EJO30485.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii HLE]
Length = 217
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 118/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIF 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++R+ A TGQ +E++ TERD F+SA +A+ +GL+D ++ +
Sbjct: 160 QAREILDLRERLNRILADNTGQSMERIGLDTERDNFMSAEDAVSYGLVDKVMTS 213
>gi|218295537|ref|ZP_03496350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
aquaticus Y51MC23]
gi|218244169|gb|EED10695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
aquaticus Y51MC23]
Length = 194
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 122/175 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANTIVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P++++M++QP G+ G D+
Sbjct: 78 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMIHQPWGGARGTASDIAI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ ++ + A TGQP+EKV++ T+RD +LSA EA+E+GLID ++ E
Sbjct: 138 QAQEILKAKKLLNEILAKHTGQPLEKVERDTDRDYYLSAQEALEYGLIDQVVTRE 192
>gi|390456222|ref|ZP_10241750.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
peoriae KCTC 3763]
Length = 198
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ + R K++R+ A TGQP+E++++ T+RD F+SA +A E+G+ID +L +
Sbjct: 139 RARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDAKEYGIIDKVLTS 192
>gi|427724491|ref|YP_007071768.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7376]
gi|427356211|gb|AFY38934.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7376]
Length = 218
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 122/191 (63%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G DL S L R RIIF+G I+ VA ++QL+ L D + DI +
Sbjct: 26 VVPMVVEQSGMGERAFDLYSRLLRERIIFLGSAIDDTVADSIVAQLLFLDAEDAEKDIQI 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD M I+P V T+C+G+AAS A +L+GG KG R A+P++R+M+
Sbjct: 86 YVNSPGGSVYAGMAIYDTMQQIRPDVVTICYGIAASMGAFLLSGGTKGKRMALPSSRVMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++ + A TGQ +KV + TERD ++SA EA
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYIKEKLNSLIADHTGQAFDKVAEDTERDFYMSAEEACA 205
Query: 260 FGLIDGILETE 270
+GLID ++ E
Sbjct: 206 YGLIDKVITPE 216
>gi|171059225|ref|YP_001791574.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
cholodnii SP-6]
gi|226706459|sp|B1Y6H3.1|CLPP_LEPCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|170776670|gb|ACB34809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
cholodnii SP-6]
Length = 202
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 124/194 (63%), Gaps = 4/194 (2%)
Query: 78 KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
+ N ++P V+ G D+ S L R R+IF+ P+N A ++QL+ L + +
Sbjct: 5 ETQNLGMVPIVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQSANLVVAQLLFLESENP 64
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
D DI Y+N PGGS+ + ++IYD M +IKP+V T+C G+AAS A +LA G KG R+++P
Sbjct: 65 DKDISFYINSPGGSVSAGMSIYDTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLP 124
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
N++IM++QP G+ G D++ E + +R +++R+ A TGQ +EK+Q TERD F+S
Sbjct: 125 NSKIMIHQPLGGAQGQATDIEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFMS 184
Query: 254 AAEAMEFGLIDGIL 267
+ EA +GLID ++
Sbjct: 185 SEEAQTYGLIDQVI 198
>gi|119898362|ref|YP_933575.1| ATP-dependent Clp protease proteolytic subunit [Azoarcus sp. BH72]
gi|166201798|sp|A1K783.1|CLPP_AZOSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119670775|emb|CAL94688.1| Endopeptidase Clp [Azoarcus sp. BH72]
Length = 212
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ P+N + A ++QL+ L + + D DI
Sbjct: 19 LIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENPDKDIYF 78
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G AAS A +LA GEKG R+ +PN+R+M+
Sbjct: 79 YINSPGGSVTAGLAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFCLPNSRVMI 138
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + R +++ M A TGQ IE++++ T+RD F+SA A+E
Sbjct: 139 HQPLGGFQGQASDIEIHAREILYLRERLNGMLAKHTGQTIEQIEKDTDRDNFMSATAAVE 198
Query: 260 FGLIDGIL 267
+GL+D +L
Sbjct: 199 YGLVDKVL 206
>gi|456063263|ref|YP_007502233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
proteobacterium CB]
gi|455440560|gb|AGG33498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
proteobacterium CB]
Length = 209
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R R++F+ +N A I+QL+ L + + D +I +
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVNDQTANLVIAQLLFLESENPDKEISL 77
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +L GEKG RYA+PN+R+M+
Sbjct: 78 YINSPGGSVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGEKGKRYALPNSRVMI 137
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++++ A TGQ IE + + T+RD F+SA +A E
Sbjct: 138 HQPLGGARGQASDIEIQAREILYLRERLNKILADRTGQSIETIAKDTDRDNFMSADQAQE 197
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 198 YGLIDKVID 206
>gi|264677387|ref|YP_003277293.1| ATP-dependent Clp protease proteolytic subunit [Comamonas
testosteroni CNB-2]
gi|299533085|ref|ZP_07046471.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
testosteroni S44]
gi|262207899|gb|ACY31997.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
testosteroni CNB-2]
gi|298718970|gb|EFI59941.1| ATP-dependent Clp protease, proteolytic subunit [Comamonas
testosteroni S44]
Length = 202
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI
Sbjct: 11 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDISF 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AI+D M++IKP V T+C G+AAS A +L+ G KG RYA+PNA++M+
Sbjct: 71 YINSPGGSVTAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLSAGAKGKRYALPNAQVMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ E + +R +++++ A TGQP+EK+Q TERD FLSA EA E
Sbjct: 131 HQPLGGARGQATEIEIHAREIIKTRERLNKILAERTGQPLEKIQNDTERDYFLSADEAKE 190
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 191 YGLVDQVI 198
>gi|347819079|ref|ZP_08872513.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 202
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R+IF+ P+N A ++QL+ L + + D DI
Sbjct: 11 LIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISF 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ S +AI+D M++IKP V T+C G+AAS A +LA G +G R+A+PN+++M+
Sbjct: 71 YINSPGGSVSSGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLAAGAQGKRFALPNSKVMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G +++ E + +R +++++ A TGQP+EK+Q+ TERD FLSA E+ E
Sbjct: 131 HQPLGGMQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSADESRE 190
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 191 YGLVDQVI 198
>gi|358637944|dbj|BAL25241.1| ATP-dependent Clp protease proteolytic subunit [Azoarcus sp. KH32C]
Length = 212
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 127/201 (63%), Gaps = 7/201 (3%)
Query: 76 SGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTL 128
SG N +P ++P V+ G D+ S L + R++F+ P+N + A ++QL+ L
Sbjct: 8 SGSNWDPVGLGMVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFL 67
Query: 129 ATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGM 188
+ + D DI Y+N PGGS+ + +AIYD M ++KP V T+C G AAS + +LA G KG
Sbjct: 68 ESENPDKDIFFYINSPGGSVSAGMAIYDTMQFVKPDVSTLCIGQAASMGSFLLAAGAKGK 127
Query: 189 RYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 248
R+ +PN+R+M++QP G G D++ E + R +++ M A TGQP+E++++ T+R
Sbjct: 128 RFCLPNSRVMIHQPLGGFQGQASDIEIHAREILNIRARLNEMLAKHTGQPVERIEKDTDR 187
Query: 249 DRFLSAAEAMEFGLIDGILET 269
D F+SA +A+E+G++D +L T
Sbjct: 188 DNFMSAKDALEYGIVDKVLTT 208
>gi|253575504|ref|ZP_04852841.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845151|gb|EES73162.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
Length = 198
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+Q++ L D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSQVNDVVANSIIAQMLFLDAEDPTKDIHLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +L G G RYA+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQFIKADVSTICVGLAASMGAFLLNAGAPGKRYALPNSEIMIHQPLGGAEGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R K++R+ + TGQP+E++++ T+RD F+SAAEA E+GLID ++E
Sbjct: 139 RARRILKMRDKLNRILSERTGQPLERIEKDTDRDYFMSAAEAKEYGLIDQVIE 191
>gi|428300044|ref|YP_007138350.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
gi|428236588|gb|AFZ02378.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
Length = 231
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +Y+N PGGS+Y+ +AI
Sbjct: 43 FDIYSRLLRERIIFLGTPIDDNVANSIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAI 102
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD + I+P V T+CFG+AAS A +L G G R ++P++RIM++QP G+ G D++
Sbjct: 103 YDTIQQIRPDVVTICFGLAASMGAFLLTSGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIE 162
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + ++++M A TGQP+E++ TERD F+SA EA +GLID ++
Sbjct: 163 IQAREILYVKAELNKMMAHHTGQPLERITADTERDFFMSAEEAKNYGLIDQVI 215
>gi|254480762|ref|ZP_05094009.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2148]
gi|214039345|gb|EEB80005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2148]
Length = 213
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 80 DNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDA 135
DN L+P V+ T G D+ S L + R+IF+ + +A ++QL+ L + + D
Sbjct: 14 DNLGLVPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDK 73
Query: 136 DILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 195
DI +Y+N PGGS+ + L+IYD M +IKP V T+C G AAS A +L GG KG RY +PNA
Sbjct: 74 DIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCLGQAASMGAFLLCGGAKGKRYCLPNA 133
Query: 196 RIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255
R M++QP G+ G D++ Q E +I R K++++ A TGQP+E +++ TERDRF++A
Sbjct: 134 RTMIHQPSGGAQGQATDIEIQAKEILIIREKLNQLMAEHTGQPLEVIERDTERDRFMNAE 193
Query: 256 EAMEFGLIDGIL 267
E+ +GL+D ++
Sbjct: 194 ESTAYGLVDEVV 205
>gi|429743956|ref|ZP_19277482.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sp. oral taxon 020 str. F0370]
gi|429164090|gb|EKY06250.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sp. oral taxon 020 str. F0370]
Length = 211
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RIIF+ P+N A ++Q++ L + + D D
Sbjct: 7 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDDTANLVVAQMLFLESENPDKD 66
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGGS+ + ++++D M++IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 67 IFLYINSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPNSR 126
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
IM++QP G GG D++ E + + K++ A TGQP+EK+++ T+RD F+SA
Sbjct: 127 IMIHQPLISGGLGGQASDIEIHARELIKIKQKLNEFLAKHTGQPLEKIERDTDRDNFMSA 186
Query: 255 AEAMEFGLIDGILET 269
A E+GLID ++ T
Sbjct: 187 DAAQEYGLIDQVIAT 201
>gi|302671762|ref|YP_003831722.1| ATP-dependent Clp protease proteolytic subunit ClpP [Butyrivibrio
proteoclasticus B316]
gi|302396235|gb|ADL35140.1| ATP-dependent Clp protease proteolytic subunit ClpP [Butyrivibrio
proteoclasticus B316]
Length = 201
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RI+F+G+ +N+ A ++QL+ L D + DI MY+N PGG I S +AIY
Sbjct: 19 DIYSRLLKERIVFLGEEVNAASASTIVAQLLFLEAEDPNKDIHMYINSPGGEISSGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +LAGG KG R A+PNA +M++QP G+ G +++
Sbjct: 79 DTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRMALPNAEVMIHQPLGGTQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++RM AA TG+ E+V TERD +LSA EA+++GLID I+E
Sbjct: 139 AAKHILKTKEKMNRMLAANTGKSYEQVAADTERDNWLSAQEALDYGLIDSIIE 191
>gi|427418142|ref|ZP_18908325.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7375]
gi|425760855|gb|EKV01708.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7375]
Length = 201
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ + + + ++Q++ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVTAESSNLIVAQMLFLEAEDPERDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M+ IKP V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMNHIKPDVSTICVGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++ AA TGQPIE++ + TERD F+S +EA+E
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYIKKTLNDALAAHTGQPIERITEDTERDFFMSPSEAVE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|310639654|ref|YP_003944412.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
polymyxa SC2]
gi|386038858|ref|YP_005957812.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa M1]
gi|309244604|gb|ADO54171.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa SC2]
gi|343094896|emb|CCC83105.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa M1]
Length = 198
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ + R K++R+ A TGQP+E++++ T+RD F+SA +A E+G+ID +L +
Sbjct: 139 RARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDAKEYGIIDKVLTS 192
>gi|294101895|ref|YP_003553753.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Aminobacterium colombiense DSM 12261]
gi|293616875|gb|ADE57029.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Aminobacterium colombiense DSM 12261]
Length = 193
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+GQ I+ +A ++QL+ L + D D DI +
Sbjct: 2 LIPMVIEQSGRGERAYDIYSRLLKDRIIFLGQEIDDPIANTVVAQLLFLESEDPDKDIHL 61
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG I S LAIYD M +IK V T+C G AAS AA++LAGG G R A+PNAR+M+
Sbjct: 62 YINSPGGVISSGLAIYDTMQYIKSPVSTICIGQAASMAAVLLAGGAPGKRIALPNARVMI 121
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ E + R KI+ + TGQ ++++ T+RD ++SAAEA+E
Sbjct: 122 HQPLGGAHGQATDIEIHAKEILKIREKINDILVKHTGQTRKRIKADTDRDFYMSAAEALE 181
Query: 260 FGLIDGILET 269
+ +ID ++E+
Sbjct: 182 YSIIDKVIES 191
>gi|406999542|gb|EKE17145.1| hypothetical protein ACD_10C00602G0002 [uncultured bacterium]
Length = 209
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + R+IF+ P+N + A ++QL+ L + D DI
Sbjct: 16 MVPMVIEQSGRGERAFDIYSRLLKERVIFLVGPVNDITANLVVAQLLFLEADNPDKDIYF 75
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L G KG R+A+PN+R+M+
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRVMI 135
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E + R +++R+ A +GQP+E++++ T+RD FLS+AEA E
Sbjct: 136 HQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDTDRDNFLSSAEAAE 195
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 196 YGLIDKVL 203
>gi|365093545|ref|ZP_09330610.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
sp. NO-1]
gi|363414425|gb|EHL21575.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
sp. NO-1]
Length = 194
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+ + +AI+
Sbjct: 19 DIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVSAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+++M++QP G G +++
Sbjct: 79 DTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALPNSKVMIHQPLGGMQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +R +++++ A TGQP+EK+Q+ TERD FLSA E+ E+GL+D ++
Sbjct: 139 HAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSAEESKEYGLVDQVI 190
>gi|15923758|ref|NP_371292.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus Mu50]
gi|15926445|ref|NP_373978.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus N315]
gi|21282459|ref|NP_645547.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus MW2]
gi|49483025|ref|YP_040249.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus MRSA252]
gi|49485640|ref|YP_042861.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus MSSA476]
gi|57650109|ref|YP_185707.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus COL]
gi|82750474|ref|YP_416215.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus RF122]
gi|87161484|ref|YP_493453.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88194551|ref|YP_499347.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|148267228|ref|YP_001246171.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus JH9]
gi|150393277|ref|YP_001315952.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus JH1]
gi|151220948|ref|YP_001331770.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156979096|ref|YP_001441355.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus Mu3]
gi|161509038|ref|YP_001574697.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221141842|ref|ZP_03566335.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253317258|ref|ZP_04840471.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus str. CF-Marseille]
gi|253731397|ref|ZP_04865562.1| ATP-dependent Clp protease proteolytic subunit family protein
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253732783|ref|ZP_04866948.1| ATP-dependent Clp protease proteolytic subunit family protein
[Staphylococcus aureus subsp. aureus TCH130]
gi|255005559|ref|ZP_05144160.2| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257424888|ref|ZP_05601315.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427556|ref|ZP_05603955.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430187|ref|ZP_05606571.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397]
gi|257432888|ref|ZP_05609248.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus E1410]
gi|257435792|ref|ZP_05611840.1| clp protease [Staphylococcus aureus subsp. aureus M876]
gi|257794910|ref|ZP_05643889.1| clp protease [Staphylococcus aureus A9781]
gi|258418226|ref|ZP_05682491.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
aureus A9763]
gi|258421524|ref|ZP_05684449.1| clp protease [Staphylococcus aureus A9719]
gi|258423417|ref|ZP_05686308.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus A9635]
gi|258439133|ref|ZP_05690177.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus A9299]
gi|258440939|ref|ZP_05690774.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
aureus A8115]
gi|258445769|ref|ZP_05693946.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus A6300]
gi|258449581|ref|ZP_05697683.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus A6224]
gi|258452184|ref|ZP_05700200.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus A5948]
gi|258453981|ref|ZP_05701953.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus A5937]
gi|262049552|ref|ZP_06022422.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30]
gi|262052698|ref|ZP_06024889.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3]
gi|269202390|ref|YP_003281659.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus ED98]
gi|282895064|ref|ZP_06303285.1| Clp protease [Staphylococcus aureus A8117]
gi|282903398|ref|ZP_06311289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus C160]
gi|282905178|ref|ZP_06313035.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908157|ref|ZP_06315988.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910415|ref|ZP_06318219.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282913610|ref|ZP_06321399.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus M899]
gi|282916110|ref|ZP_06323873.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
gi|282918561|ref|ZP_06326298.1| Clp protease [Staphylococcus aureus subsp. aureus C427]
gi|282922066|ref|ZP_06329763.1| Clp protease [Staphylococcus aureus A9765]
gi|282923527|ref|ZP_06331207.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
gi|282926635|ref|ZP_06334265.1| Clp protease [Staphylococcus aureus A10102]
gi|283769931|ref|ZP_06342823.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp.
aureus H19]
gi|283957600|ref|ZP_06375053.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus A017934/97]
gi|284023791|ref|ZP_06378189.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus 132]
gi|293500653|ref|ZP_06666504.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
gi|293509601|ref|ZP_06668312.1| Clp protease [Staphylococcus aureus subsp. aureus M809]
gi|293524187|ref|ZP_06670874.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus M1015]
gi|294850496|ref|ZP_06791225.1| Clp protease [Staphylococcus aureus A9754]
gi|295406492|ref|ZP_06816298.1| Clp protease [Staphylococcus aureus A8819]
gi|295427347|ref|ZP_06819982.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296276994|ref|ZP_06859501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus MR1]
gi|297208504|ref|ZP_06924933.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297245218|ref|ZP_06929092.1| Clp protease [Staphylococcus aureus A8796]
gi|297590298|ref|ZP_06948937.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus MN8]
gi|300912596|ref|ZP_07130039.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus TCH70]
gi|304381609|ref|ZP_07364259.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|379014058|ref|YP_005290294.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VC40]
gi|379020540|ref|YP_005297202.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus M013]
gi|379795239|ref|YP_005325237.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus MSHR1132]
gi|384547051|ref|YP_005736304.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ED133]
gi|384549630|ref|YP_005738882.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus JKD6159]
gi|384861436|ref|YP_005744156.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384864093|ref|YP_005749452.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|384868298|ref|YP_005748494.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus TCH60]
gi|384869354|ref|YP_005752068.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus T0131]
gi|385781094|ref|YP_005757265.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 11819-97]
gi|386728536|ref|YP_006194919.1| ATP-dependent endopeptidase clp proteolytic subunit [Staphylococcus
aureus subsp. aureus 71193]
gi|386830410|ref|YP_006237064.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus HO 5096 0412]
gi|387142462|ref|YP_005730855.1| putative ATP-dependent Clp protease proteolyticsubunit
[Staphylococcus aureus subsp. aureus TW20]
gi|387149931|ref|YP_005741495.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus 04-02981]
gi|387602124|ref|YP_005733645.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus ST398]
gi|387779903|ref|YP_005754701.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus LGA251]
gi|404478169|ref|YP_006709599.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus 08BA02176]
gi|415683595|ref|ZP_11448811.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
CGS00]
gi|415689458|ref|ZP_11452760.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
CGS01]
gi|415693848|ref|ZP_11455519.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
CGS03]
gi|416842650|ref|ZP_11905104.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus O11]
gi|416847874|ref|ZP_11907423.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus O46]
gi|417650451|ref|ZP_12300222.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21189]
gi|417652532|ref|ZP_12302279.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21172]
gi|417655183|ref|ZP_12304897.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21193]
gi|417796631|ref|ZP_12443837.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21305]
gi|417798637|ref|ZP_12445797.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21310]
gi|417802514|ref|ZP_12449572.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21318]
gi|417887242|ref|ZP_12531375.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21195]
gi|417890528|ref|ZP_12534601.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21200]
gi|417892365|ref|ZP_12536415.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21201]
gi|417896583|ref|ZP_12540529.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21235]
gi|417898150|ref|ZP_12542074.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21259]
gi|417902321|ref|ZP_12546188.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21266]
gi|417904583|ref|ZP_12548405.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21269]
gi|418280847|ref|ZP_12893672.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21178]
gi|418283166|ref|ZP_12895922.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21202]
gi|418284347|ref|ZP_12897073.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21209]
gi|418308841|ref|ZP_12920432.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21194]
gi|418309577|ref|ZP_12921131.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21331]
gi|418313751|ref|ZP_12925236.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21334]
gi|418315200|ref|ZP_12926664.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21340]
gi|418318354|ref|ZP_12929759.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21232]
gi|418322160|ref|ZP_12933497.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus VCU006]
gi|418423914|ref|ZP_12997054.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS1]
gi|418426888|ref|ZP_12999909.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS2]
gi|418429820|ref|ZP_13002744.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS3a]
gi|418432714|ref|ZP_13005507.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS4]
gi|418436430|ref|ZP_13008239.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS5]
gi|418439328|ref|ZP_13011043.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS6]
gi|418442304|ref|ZP_13013916.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS7]
gi|418445435|ref|ZP_13016920.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS8]
gi|418448373|ref|ZP_13019772.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS9]
gi|418451192|ref|ZP_13022531.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS10]
gi|418454216|ref|ZP_13025483.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS11a]
gi|418457120|ref|ZP_13028329.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS11b]
gi|418561062|ref|ZP_13125562.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21252]
gi|418561317|ref|ZP_13125809.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21262]
gi|418565775|ref|ZP_13130170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21264]
gi|418566869|ref|ZP_13131236.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21272]
gi|418570534|ref|ZP_13134800.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21283]
gi|418574077|ref|ZP_13138254.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21333]
gi|418578667|ref|ZP_13142762.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1114]
gi|418581482|ref|ZP_13145563.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1605]
gi|418595736|ref|ZP_13159333.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21342]
gi|418598777|ref|ZP_13162284.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21343]
gi|418601712|ref|ZP_13165128.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21345]
gi|418639487|ref|ZP_13201734.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-3]
gi|418640943|ref|ZP_13203159.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-24]
gi|418644345|ref|ZP_13206491.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-55]
gi|418647139|ref|ZP_13209218.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-88]
gi|418650986|ref|ZP_13212997.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-91]
gi|418654288|ref|ZP_13216201.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-99]
gi|418656309|ref|ZP_13218123.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-105]
gi|418657987|ref|ZP_13219735.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-111]
gi|418660942|ref|ZP_13222548.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-122]
gi|418872430|ref|ZP_13426769.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-125]
gi|418874789|ref|ZP_13429055.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC93]
gi|418877613|ref|ZP_13431852.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1165]
gi|418880473|ref|ZP_13434693.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1213]
gi|418883398|ref|ZP_13437597.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1769]
gi|418886060|ref|ZP_13440210.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1150]
gi|418888666|ref|ZP_13442802.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1524]
gi|418891410|ref|ZP_13445527.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1176]
gi|418894225|ref|ZP_13448326.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1057]
gi|418897185|ref|ZP_13451258.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900155|ref|ZP_13454214.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1214]
gi|418903043|ref|ZP_13457084.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1770]
gi|418904859|ref|ZP_13458888.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|418908561|ref|ZP_13462569.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG149]
gi|418913957|ref|ZP_13467929.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|418916633|ref|ZP_13470594.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1267]
gi|418919641|ref|ZP_13473584.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC348]
gi|418922437|ref|ZP_13476354.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1233]
gi|418925006|ref|ZP_13478909.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG2018]
gi|418928091|ref|ZP_13481977.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1612]
gi|418930802|ref|ZP_13484650.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1750]
gi|418933703|ref|ZP_13487527.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC128]
gi|418948897|ref|ZP_13501177.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-157]
gi|418949913|ref|ZP_13502132.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-160]
gi|418952635|ref|ZP_13504651.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-189]
gi|418979235|ref|ZP_13527032.1| ClpP [Staphylococcus aureus subsp. aureus DR10]
gi|418981671|ref|ZP_13529386.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1242]
gi|418985309|ref|ZP_13532998.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1500]
gi|418987671|ref|ZP_13535344.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1835]
gi|418990658|ref|ZP_13538319.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1096]
gi|418993481|ref|ZP_13541118.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG290]
gi|419775511|ref|ZP_14301450.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CO-23]
gi|419785631|ref|ZP_14311382.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-M]
gi|421149542|ref|ZP_15609200.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|422744913|ref|ZP_16798868.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus MRSA177]
gi|422746628|ref|ZP_16800559.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus MRSA131]
gi|424770820|ref|ZP_18198002.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CM05]
gi|424784626|ref|ZP_18211436.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus CN79]
gi|440708128|ref|ZP_20888804.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21282]
gi|440734249|ref|ZP_20913861.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus DSM 20231]
gi|443637771|ref|ZP_21121839.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21236]
gi|443640354|ref|ZP_21124345.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21196]
gi|448741163|ref|ZP_21723134.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus KT/314250]
gi|448745335|ref|ZP_21727190.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus KT/Y21]
gi|54036854|sp|P63786.1|CLPP_STAAW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|54036862|sp|P99089.1|CLPP_STAAN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|54040892|sp|P63785.1|CLPP_STAAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56748671|sp|Q6GB62.1|CLPP_STAAS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56748685|sp|Q6GIM3.1|CLPP_STAAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460165|sp|Q5HHQ0.1|CLPP_STAAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|90183185|sp|Q2YSF8.1|CLPP_STAAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|116243169|sp|Q2G036.1|CLPP_STAA8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|124013828|sp|Q2FIM5.1|CLPP_STAA3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214713|sp|A7WZR9.1|CLPP_STAA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|172048797|sp|A6QF76.1|CLPP_STAAE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082468|sp|A6TZP7.1|CLPP_STAA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082469|sp|A5IQX2.1|CLPP_STAA9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082470|sp|A8Z045.1|CLPP_STAAT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|13700659|dbj|BAB41956.1| clpP [Staphylococcus aureus subsp. aureus N315]
gi|14246537|dbj|BAB56930.1| ATP-dependent Clp protease proteolytic subunit homologue
[Staphylococcus aureus subsp. aureus Mu50]
gi|21203896|dbj|BAB94595.1| clpP [Staphylococcus aureus subsp. aureus MW2]
gi|49241154|emb|CAG39832.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus aureus subsp. aureus MRSA252]
gi|49244083|emb|CAG42509.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus aureus subsp. aureus MSSA476]
gi|57284295|gb|AAW36389.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus COL]
gi|82656005|emb|CAI80410.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus RF122]
gi|87127458|gb|ABD21972.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87202109|gb|ABD29919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147740297|gb|ABQ48595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
aureus subsp. aureus JH9]
gi|149945729|gb|ABR51665.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus JH1]
gi|150373748|dbj|BAF67008.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156721231|dbj|BAF77648.1| ATP-dependent Clp protease proteolytic subunit homologue
[Staphylococcus aureus subsp. aureus Mu3]
gi|160367847|gb|ABX28818.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253724847|gb|EES93576.1| ATP-dependent Clp protease proteolytic subunit family protein
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253729257|gb|EES97986.1| ATP-dependent Clp protease proteolytic subunit family protein
[Staphylococcus aureus subsp. aureus TCH130]
gi|257272458|gb|EEV04581.1| clp protease [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275749|gb|EEV07222.1| clp protease [Staphylococcus aureus subsp. aureus 65-1322]
gi|257279384|gb|EEV09985.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus 68-397]
gi|257282303|gb|EEV12438.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus E1410]
gi|257284983|gb|EEV15102.1| clp protease [Staphylococcus aureus subsp. aureus M876]
gi|257788882|gb|EEV27222.1| clp protease [Staphylococcus aureus A9781]
gi|257839019|gb|EEV63498.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
aureus A9763]
gi|257842450|gb|EEV66874.1| clp protease [Staphylococcus aureus A9719]
gi|257846478|gb|EEV70501.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus A9635]
gi|257847705|gb|EEV71702.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus A9299]
gi|257852453|gb|EEV76374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
aureus A8115]
gi|257855345|gb|EEV78283.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus A6300]
gi|257857089|gb|EEV79988.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus A6224]
gi|257860399|gb|EEV83231.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus A5948]
gi|257863846|gb|EEV86602.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus A5937]
gi|259159395|gb|EEW44448.1| hypothetical protein SA930_1868 [Staphylococcus aureus 930918-3]
gi|259162388|gb|EEW46960.1| hypothetical protein SAD30_0974 [Staphylococcus aureus D30]
gi|262074680|gb|ACY10653.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus ED98]
gi|269940345|emb|CBI48722.1| putative ATP-dependent Clp protease proteolyticsubunit
[Staphylococcus aureus subsp. aureus TW20]
gi|282314395|gb|EFB44785.1| Clp protease [Staphylococcus aureus subsp. aureus C101]
gi|282317695|gb|EFB48067.1| Clp protease [Staphylococcus aureus subsp. aureus C427]
gi|282320058|gb|EFB50405.1| Clp protease [Staphylococcus aureus subsp. aureus D139]
gi|282322642|gb|EFB52964.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus M899]
gi|282325807|gb|EFB56115.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282327822|gb|EFB58104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331585|gb|EFB61097.1| endopeptidase ClpP [Staphylococcus aureus subsp. aureus Btn1260]
gi|282591528|gb|EFB96600.1| Clp protease [Staphylococcus aureus A10102]
gi|282593724|gb|EFB98716.1| Clp protease [Staphylococcus aureus A9765]
gi|282596353|gb|EFC01314.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus C160]
gi|282762560|gb|EFC02699.1| Clp protease [Staphylococcus aureus A8117]
gi|283460078|gb|EFC07168.1| ATP-dependent Clp protease subunit [Staphylococcus aureus subsp.
aureus H19]
gi|283470062|emb|CAQ49273.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus ST398]
gi|283791051|gb|EFC29866.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus A017934/97]
gi|285816470|gb|ADC36957.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus 04-02981]
gi|290921150|gb|EFD98211.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus M1015]
gi|291095658|gb|EFE25919.1| Clp protease [Staphylococcus aureus subsp. aureus 58-424]
gi|291467698|gb|EFF10213.1| Clp protease [Staphylococcus aureus subsp. aureus M809]
gi|294822634|gb|EFG39074.1| Clp protease [Staphylococcus aureus A9754]
gi|294968637|gb|EFG44660.1| Clp protease [Staphylococcus aureus A8819]
gi|295128735|gb|EFG58366.1| Clp protease [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296886759|gb|EFH25663.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297177889|gb|EFH37138.1| Clp protease [Staphylococcus aureus A8796]
gi|297576597|gb|EFH95312.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus MN8]
gi|298694101|gb|ADI97323.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ED133]
gi|300886842|gb|EFK82044.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus TCH70]
gi|302332479|gb|ADL22672.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302750665|gb|ADL64842.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304339972|gb|EFM05916.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312438803|gb|ADQ77874.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus TCH60]
gi|312829260|emb|CBX34102.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129024|gb|EFT85021.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
CGS03]
gi|315194387|gb|EFU24779.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
CGS00]
gi|315196246|gb|EFU26600.1| S14 family endopeptidase ClpP [Staphylococcus aureus subsp. aureus
CGS01]
gi|320139896|gb|EFW31757.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus MRSA131]
gi|320142013|gb|EFW33841.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus MRSA177]
gi|323438624|gb|EGA96368.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus O11]
gi|323441949|gb|EGA99586.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus O46]
gi|329313489|gb|AEB87902.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus T0131]
gi|329723806|gb|EGG60334.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21189]
gi|329724642|gb|EGG61149.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21172]
gi|329729644|gb|EGG66045.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21193]
gi|334268522|gb|EGL86960.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21305]
gi|334274514|gb|EGL92832.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21318]
gi|334275498|gb|EGL93787.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21310]
gi|341840549|gb|EGS82052.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21235]
gi|341843411|gb|EGS84638.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21266]
gi|341846489|gb|EGS87681.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21269]
gi|341849148|gb|EGS90299.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21259]
gi|341854663|gb|EGS95529.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21200]
gi|341857827|gb|EGS98637.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21201]
gi|341858295|gb|EGS99092.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21195]
gi|344177005|emb|CCC87469.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus aureus subsp. aureus LGA251]
gi|356872229|emb|CCE58568.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus aureus subsp. aureus MSHR1132]
gi|359829849|gb|AEV77827.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus M013]
gi|364522083|gb|AEW64833.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 11819-97]
gi|365167418|gb|EHM58883.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21178]
gi|365168239|gb|EHM59592.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21202]
gi|365173650|gb|EHM64138.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21209]
gi|365223769|gb|EHM65044.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus VCU006]
gi|365235450|gb|EHM76369.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21334]
gi|365236874|gb|EHM77752.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21194]
gi|365238910|gb|EHM79738.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21331]
gi|365243223|gb|EHM83909.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21232]
gi|365243830|gb|EHM84498.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21340]
gi|371970171|gb|EHO87601.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21252]
gi|371972686|gb|EHO90060.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21264]
gi|371977662|gb|EHO94925.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21262]
gi|371980174|gb|EHO97388.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21333]
gi|371983433|gb|EHP00577.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21272]
gi|371983904|gb|EHP01037.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21283]
gi|374362755|gb|AEZ36860.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VC40]
gi|374397523|gb|EHQ68732.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21345]
gi|374398927|gb|EHQ70079.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21343]
gi|374400646|gb|EHQ71756.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21342]
gi|375016574|gb|EHS10213.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-99]
gi|375017513|gb|EHS11127.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-3]
gi|375020140|gb|EHS13681.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-24]
gi|375025890|gb|EHS19283.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-55]
gi|375026798|gb|EHS20176.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-91]
gi|375030962|gb|EHS24257.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-88]
gi|375034031|gb|EHS27209.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-105]
gi|375039561|gb|EHS32485.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-111]
gi|375039717|gb|EHS32635.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-122]
gi|375367180|gb|EHS71148.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-125]
gi|375370404|gb|EHS74213.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-157]
gi|375376349|gb|EHS79884.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-189]
gi|375378040|gb|EHS81464.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-160]
gi|377696321|gb|EHT20677.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1165]
gi|377696694|gb|EHT21049.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1114]
gi|377698573|gb|EHT22921.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1057]
gi|377705237|gb|EHT29545.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1214]
gi|377707151|gb|EHT31445.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1500]
gi|377707491|gb|EHT31784.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1242]
gi|377711709|gb|EHT35938.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1605]
gi|377716064|gb|EHT40249.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1769]
gi|377716669|gb|EHT40851.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1750]
gi|377719459|gb|EHT43629.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1835]
gi|377722780|gb|EHT46905.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1096]
gi|377727358|gb|EHT51465.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1150]
gi|377732367|gb|EHT56418.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1176]
gi|377732911|gb|EHT56961.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1213]
gi|377735760|gb|EHT59790.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1233]
gi|377738003|gb|EHT62012.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1612]
gi|377742058|gb|EHT66043.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1770]
gi|377746301|gb|EHT70272.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG2018]
gi|377746640|gb|EHT70610.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG290]
gi|377751138|gb|EHT75072.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1267]
gi|377754176|gb|EHT78085.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG1524]
gi|377755900|gb|EHT79798.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG149]
gi|377757459|gb|EHT81347.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|377761964|gb|EHT85833.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC341D]
gi|377766399|gb|EHT90232.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|377767166|gb|EHT90979.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC348]
gi|377771483|gb|EHT95237.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC128]
gi|377772129|gb|EHT95882.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIGC93]
gi|379992914|gb|EIA14363.1| ClpP [Staphylococcus aureus subsp. aureus DR10]
gi|383362393|gb|EID39746.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus IS-M]
gi|383970734|gb|EID86827.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CO-23]
gi|384229829|gb|AFH69076.1| ClpP [Staphylococcus aureus subsp. aureus 71193]
gi|385195802|emb|CCG15411.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus aureus subsp. aureus HO 5096 0412]
gi|387720067|gb|EIK07989.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS3a]
gi|387720500|gb|EIK08410.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS2]
gi|387722162|gb|EIK09994.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS1]
gi|387726898|gb|EIK14438.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS4]
gi|387728978|gb|EIK16450.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS5]
gi|387731240|gb|EIK18554.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS6]
gi|387737314|gb|EIK24384.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS8]
gi|387738791|gb|EIK25811.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS9]
gi|387739281|gb|EIK26289.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS7]
gi|387746356|gb|EIK33088.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS10]
gi|387746991|gb|EIK33707.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS11a]
gi|387748374|gb|EIK35058.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus VRS11b]
gi|394330459|gb|EJE56551.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|402347961|gb|EJU82967.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CM05]
gi|404439658|gb|AFR72851.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus aureus 08BA02176]
gi|408423155|emb|CCJ10566.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ST228]
gi|408425145|emb|CCJ12532.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ST228]
gi|408427133|emb|CCJ14496.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ST228]
gi|408429120|emb|CCJ26285.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ST228]
gi|408431108|emb|CCJ18423.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ST228]
gi|408433102|emb|CCJ20387.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ST228]
gi|408435093|emb|CCJ22353.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ST228]
gi|408437078|emb|CCJ24321.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus subsp. aureus ST228]
gi|421957225|gb|EKU09549.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus CN79]
gi|436431277|gb|ELP28630.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus DSM 20231]
gi|436505312|gb|ELP41236.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21282]
gi|443405001|gb|ELS63615.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21236]
gi|443405495|gb|ELS64098.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus 21196]
gi|445548141|gb|ELY16396.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus KT/314250]
gi|445561343|gb|ELY17551.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
aureus KT/Y21]
Length = 195
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
N + +R K++R+ + TGQ IEK+Q+ T+RD FL+A EA E+GLID ++
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190
>gi|229164087|ref|ZP_04292023.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
R309803]
gi|228619323|gb|EEK76213.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
R309803]
Length = 193
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A +A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKIF 190
>gi|113970830|ref|YP_734623.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
MR-4]
gi|123029527|sp|Q0HHA1.1|CLPP_SHESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113885514|gb|ABI39566.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
MR-4]
Length = 202
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AI
Sbjct: 26 FDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAI 85
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 86 YDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIA 145
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +HK++ M + TGQP+E +++ T+RD F+SA +A+E+GL+D ++
Sbjct: 146 IHAQEILGIKHKLNLMLSEHTGQPLELIERDTDRDNFMSATQAVEYGLVDAVM 198
>gi|226311381|ref|YP_002771275.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
gi|226094329|dbj|BAH42771.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
Length = 193
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ +A ++QL+ L D D DI +Y+N PGGS+ + +AIY
Sbjct: 18 DIYSRLLKDRIILLGTEIDDEIANLIVAQLLFLQAEDPDKDISLYINSPGGSVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PNA +M++QP G G ED++
Sbjct: 78 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGVRGQAEDIRI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ +++ + + TGQP E+V+Q T+RD F+SA EA +GLID I+E
Sbjct: 138 HAEWIMKTKRQLNEILSERTGQPYERVEQDTDRDNFMSAEEAKAYGLIDSIIE 190
>gi|254421271|ref|ZP_05034989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7335]
gi|196188760|gb|EDX83724.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7335]
Length = 269
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 122/191 (63%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G P+ +A ++QL+ L D + D+ +
Sbjct: 68 MLPMVVEQSGRGERAFDIYSRLLRERIVFLGTPVMDDIADSIVAQLLFLDAEDPEKDVQL 127
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M I+P V T+CFG+AAS A +L+GG KG R ++P+ARIM+
Sbjct: 128 YINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMSLPSARIMI 187
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ M A TGQ I +++ TERD F+SA EA E
Sbjct: 188 HQPSGGAQGQSADIEIQAREILYLKKRLNEMLADHTGQDISRIEADTERDFFMSAEEAKE 247
Query: 260 FGLIDGILETE 270
+GLID ++ +
Sbjct: 248 YGLIDQVVSRQ 258
>gi|374321531|ref|YP_005074660.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
terrae HPL-003]
gi|357200540|gb|AET58437.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
terrae HPL-003]
Length = 198
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYVNSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + R K++R+ A TGQP+E++++ T+RD F+SA +A E+G+ID +L
Sbjct: 139 RARRILKMRDKLNRILADRTGQPLERIEKDTDRDYFMSADDAKEYGIIDKVL 190
>gi|72382132|ref|YP_291487.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. NATL2A]
gi|115311342|sp|Q46L44.1|CLPP1_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|72001982|gb|AAZ57784.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. NATL2A]
Length = 196
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G+P+ S A R ++QL+ L D D DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEADDPDKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSLLHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + K+++ + TGQPIE++++ T+RD ++S +EA+E
Sbjct: 121 HQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQPIERIREDTDRDFYMSPSEAIE 180
Query: 260 FGLIDGIL 267
+G+ID +
Sbjct: 181 YGIIDNVF 188
>gi|116747551|ref|YP_844238.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Syntrophobacter fumaroxidans MPOB]
gi|166214718|sp|A0LEF1.1|CLPP_SYNFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|116696615|gb|ABK15803.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Syntrophobacter fumaroxidans MPOB]
Length = 202
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 113/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R+RIIF+G I VA I+QL+ L + D D DI Y+N PGG + + LAI
Sbjct: 18 FDIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPGGLVTAGLAI 77
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V T+C G AAS AAI+LA G KG RYA+P+ RIML+QP G G DV+
Sbjct: 78 YDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQGQATDVE 137
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ + TG+P+E++Q+ T+RD ++S +A E+G++D I
Sbjct: 138 IQAKEILKLREELNDILVRHTGRPVEQIQRDTDRDFYMSGEQAREYGMVDHIF 190
>gi|427720043|ref|YP_007068037.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 7507]
gi|427352479|gb|AFY35203.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 7507]
Length = 232
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDTVANSIVAQLLFLDAEDSEKDIQL 88
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD M I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLTAGAAGKRMSLPDSRIMI 148
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++++ + TGQ +EK++ TERD F+SA EA
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAKLNQLMSQHTGQSLEKIEADTERDFFMSAEEAKN 208
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 209 YGLIDQVI 216
>gi|117921102|ref|YP_870294.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
ANA-3]
gi|166214711|sp|A0KYL9.1|CLPP_SHESA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|117613434|gb|ABK48888.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
ANA-3]
Length = 202
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AI
Sbjct: 26 FDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAI 85
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 86 YDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIA 145
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +HK++ M + TGQP+E +++ T+RD F+SA +A+E+GL+D ++
Sbjct: 146 IHAQEILGIKHKLNLMLSEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVM 198
>gi|428775586|ref|YP_007167373.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halothece sp.
PCC 7418]
gi|428689865|gb|AFZ43159.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halothece sp.
PCC 7418]
Length = 199
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ ++ +A ++Q++ L D + DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIVFLGQQVDDEIANLIVAQMLYLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ GEKG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVSTICLGLAASMGAFLLSAGEKGKRLSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQP++++ + TERD F+S E+ME
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQQLNHYLAEHTGQPLDRIAEDTERDFFMSPQESME 180
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 181 YGLIDRVIE 189
>gi|395225605|ref|ZP_10404124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiovulum sp.
ES]
gi|394446228|gb|EJF07066.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiovulum sp.
ES]
Length = 197
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ + +N VA ++QL+ L D + DI Y+N PGG I S ++IY
Sbjct: 19 DIYSRLLKDRIVMLSGEVNDAVASSIVAQLLFLEAEDPEKDIYFYINSPGGVITSGMSIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP+V T+C G AAS A +L+ GEKG RYA+PNARIM++QP G+ G D++
Sbjct: 79 DTMNYIKPQVSTICIGQAASMGAFLLSAGEKGKRYALPNARIMIHQPLGGAKGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + ++++ + TGQ IE +++ TERD+F+SA E+ ++GLID +L
Sbjct: 139 QAEEILRMKRDLNKILSENTGQSIETIERDTERDKFMSAEESAQYGLIDKVL 190
>gi|375084538|ref|ZP_09731403.1| ATP-dependent Clp protease proteolytic subunit [Megamonas
funiformis YIT 11815]
gi|374568042|gb|EHR39235.1| ATP-dependent Clp protease proteolytic subunit [Megamonas
funiformis YIT 11815]
Length = 198
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGGPIDDNVANVVIAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +++LA G KG RYA+P +RIM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICIGQAASMGSVLLAAGAKGKRYALPYSRIMIHQPLGGAQGQSTDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R ++ + + TGQ ++K+ + TERD F+SA EA ++GLID ++
Sbjct: 139 QAREILRIRETLNEILSRHTGQSVKKLTEDTERDNFMSALEAKKYGLIDEVI 190
>gi|30265176|ref|NP_847553.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Ames]
gi|47530690|ref|YP_022039.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49187986|ref|YP_031239.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Sterne]
gi|65317122|ref|ZP_00390081.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
anthracis str. A2012]
gi|165869926|ref|ZP_02214583.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0488]
gi|167635263|ref|ZP_02393578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0442]
gi|167640458|ref|ZP_02398721.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0193]
gi|170687959|ref|ZP_02879172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0465]
gi|170707727|ref|ZP_02898178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0389]
gi|177652976|ref|ZP_02935303.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0174]
gi|190567666|ref|ZP_03020578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. Tsiankovskii-I]
gi|227817909|ref|YP_002817918.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. CDC 684]
gi|229599890|ref|YP_002869370.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. A0248]
gi|254686423|ref|ZP_05150282.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. CNEVA-9066]
gi|254735629|ref|ZP_05193336.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Western North America USA6153]
gi|254744284|ref|ZP_05201964.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Kruger B]
gi|254755582|ref|ZP_05207615.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Vollum]
gi|254757037|ref|ZP_05209065.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Australia 94]
gi|386739003|ref|YP_006212184.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus
anthracis str. H9401]
gi|421508903|ref|ZP_15955813.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. UR-1]
gi|421639800|ref|ZP_16080390.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. BF1]
gi|67460531|sp|Q81X63.1|CLPP2_BACAN RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|30259853|gb|AAP29039.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. Ames]
gi|47505838|gb|AAT34514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. 'Ames Ancestor']
gi|49181913|gb|AAT57289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. Sterne]
gi|164714249|gb|EDR19769.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0488]
gi|167511501|gb|EDR86884.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0193]
gi|167529306|gb|EDR92058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0442]
gi|170127284|gb|EDS96160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0389]
gi|170668068|gb|EDT18818.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0465]
gi|172081751|gb|EDT66821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0174]
gi|190561082|gb|EDV15055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. Tsiankovskii-I]
gi|227003920|gb|ACP13663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. CDC 684]
gi|229264298|gb|ACQ45935.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0248]
gi|384388855|gb|AFH86516.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus
anthracis str. H9401]
gi|401821079|gb|EJT20239.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. UR-1]
gi|403393152|gb|EJY90398.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. BF1]
Length = 193
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A +A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKIF 190
>gi|311107153|ref|YP_003980006.1| ATP-dependent Clp protease proteolytic subunit ClpP [Achromobacter
xylosoxidans A8]
gi|310761842|gb|ADP17291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Achromobacter
xylosoxidans A8]
Length = 217
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIF 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQ +E++ TERD F+SA +A+ +GL+D ++
Sbjct: 160 QAREILDLRERLNRILAENTGQTMERIGIDTERDNFMSAEDAVSYGLVDKVM 211
>gi|116074798|ref|ZP_01472059.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RS9916]
gi|116068020|gb|EAU73773.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RS9916]
Length = 196
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G+P+ S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSESANRIVAQLLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + K++R A +GQP+EK+Q T+RD F+S EA+
Sbjct: 121 HQPLGGASGQASDIRIQADEILFLKDKLNRELAERSGQPLEKMQVDTDRDFFMSPDEAVT 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDTVID 189
>gi|386319889|ref|YP_006016052.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus pseudintermedius ED99]
gi|323465060|gb|ADX77213.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus pseudintermedius ED99]
Length = 195
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +R +++++ + TGQPIEK+++ T+RD FL+A EA E+GLID ++E E
Sbjct: 139 AAKHILRTRERLNKILSERTGQPIEKIEKDTDRDNFLTAQEAKEYGLIDEVMEPE 193
>gi|222150769|ref|YP_002559922.1| ATP-dependent Clp protease proteolytic subunit [Macrococcus
caseolyticus JCSC5402]
gi|254763793|sp|B9EAG5.1|CLPP_MACCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|222119891|dbj|BAH17226.1| ATP-dependent protease proteolytic subunit ClpP [Macrococcus
caseolyticus JCSC5402]
Length = 194
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ +R K++R+ A TGQPIEK+++ T+RD FL+A EA +GLID ++
Sbjct: 139 AARHILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTADEAKAYGLIDEVMH 191
>gi|284044102|ref|YP_003394442.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
woesei DSM 14684]
gi|283948323|gb|ADB51067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
woesei DSM 14684]
Length = 194
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 125/189 (66%), Gaps = 4/189 (2%)
Query: 83 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ T G D+ S L RIIF+G P++ +A ++QL+ L + D D DI
Sbjct: 3 PLVPMVVEQTSRGERAFDIYSRLLNERIIFLGTPVDDQIANLIVAQLLHLESEDPDKDIS 62
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGS+Y+ LAIYD M +IKP V T+C G+A S A++L+GG +G R A+PNA+I+
Sbjct: 63 IYINSPGGSVYAGLAIYDTMQFIKPDVQTICVGIAMSMGALLLSGGARGKRMALPNAKIL 122
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++Q S G D++ E + R ++D + A +G+P+++V++ TERD F+S+ EA
Sbjct: 123 IHQVSSSFQGQATDIEIHAREIIDIRRRLDEIIALHSGKPVDEVKKDTERDYFMSSEEAK 182
Query: 259 EFGLIDGIL 267
++G+ID ++
Sbjct: 183 DYGIIDRVI 191
>gi|254282219|ref|ZP_04957187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR51-B]
gi|219678422|gb|EED34771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR51-B]
Length = 220
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 126/196 (64%), Gaps = 4/196 (2%)
Query: 77 GKNDNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 132
G N L+P V+ T G D+ S L + R+IF+ I +A ++QL+ L + +
Sbjct: 17 GDIQNLGLVPMVIEQTSRGERSFDIYSRLLKERVIFVVGGIEDHMANLIVAQLLFLESEN 76
Query: 133 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 192
D DI +Y+N PGGS+ + L+IYD M ++KP V T+C G AAS A +L+GG KG RY +
Sbjct: 77 PDKDIHIYINSPGGSVTAGLSIYDTMQFVKPDVSTMCIGQAASMGAFLLSGGAKGKRYIL 136
Query: 193 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252
PNAR M++QP G+ G D++ Q E + R +++R+ A TGQ +E +++ TERDRF+
Sbjct: 137 PNARTMIHQPSGGAQGQASDIEIQAKEILYLRERLNRLMADHTGQTLETIERDTERDRFM 196
Query: 253 SAAEAMEFGLIDGILE 268
SA +++E+GL+D ++E
Sbjct: 197 SAEQSVEYGLVDEVVE 212
>gi|260892392|ref|YP_003238489.1| ATP-dependent Clp protease proteolytic subunit [Ammonifex degensii
KC4]
gi|260864533|gb|ACX51639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
degensii KC4]
Length = 200
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG PI+ +A I+QL+ L D + DI +Y+N PGG + + +AIY
Sbjct: 21 DIYSRLLKDRIIFIGGPIDDHLANLVIAQLLFLEAEDPEKDIHLYINSPGGLVTAGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G AAS AA +LA G KG RYA+P ARIML+QP G G +V+
Sbjct: 81 DTMQYIRPDVSTICLGQAASMAAFLLAAGAKGKRYALPYARIMLHQPLGGFQGQATEVEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R ++ + + TGQP+EK+ Q T+RD F++A +A ++GLID ++
Sbjct: 141 HAREIMRMRQVLNELLSKHTGQPVEKIAQDTDRDFFMTAQQAKDYGLIDEVI 192
>gi|411119403|ref|ZP_11391783.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Oscillatoriales cyanobacterium JSC-12]
gi|410711266|gb|EKQ68773.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Oscillatoriales cyanobacterium JSC-12]
Length = 229
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G PI+ VA ++QL+ L D + DI +
Sbjct: 27 VIPVVIEQAGRGERAFDIYSRLLRERIVFLGTPIDDAVADSVVAQLLFLEAEDPEKDIQL 86
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M ++ V T+CFG+AAS A +LA G G R ++P++R+M+
Sbjct: 87 YINSPGGSVTAGMAIYDTMQQVRCDVATICFGLAASMGAFLLASGTTGKRMSLPSSRVMI 146
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++ + + T QP EK++ TERD F+SAAEA E
Sbjct: 147 HQPLGGAQGQAVDIEIQAKEILYHKRKLNELLSYHTRQPFEKIEADTERDFFMSAAEAKE 206
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 207 YGLIDQVI 214
>gi|296136117|ref|YP_003643359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
intermedia K12]
gi|295796239|gb|ADG31029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
intermedia K12]
Length = 202
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 123/191 (64%), Gaps = 4/191 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L R R+IF+ PIN +A ++QL+ L + + D D
Sbjct: 8 NLGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKD 67
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGGS+ + +AI+D M +IKP V T+C G+AAS A ++A G KG RY++PN+R
Sbjct: 68 ISLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSR 127
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
IM++QP G+ G D++ Q E + R +++ + A TGQ +EK+ TERD F+SA E
Sbjct: 128 IMIHQPSGGAQGQATDIEIQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSAEE 187
Query: 257 AMEFGLIDGIL 267
A ++GLID ++
Sbjct: 188 AKDYGLIDEVI 198
>gi|320450477|ref|YP_004202573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
scotoductus SA-01]
gi|320150646|gb|ADW22024.1| ATP-dependent Clp protease, proteolytic, subunit ClpP [Thermus
scotoductus SA-01]
Length = 212
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 121/175 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+S VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 36 DIYSRLLKDRIIFLGTPIDSQVANIIVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIY 95
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P++++M++QP G G D+
Sbjct: 96 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMIHQPWGGVRGTASDIAI 155
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ ++ + A TGQP+EKV++ T+RD +LSA EA+E+GLID ++ E
Sbjct: 156 QAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVVTRE 210
>gi|387773849|ref|ZP_10129134.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
parahaemolyticus HK385]
gi|386903670|gb|EIJ68477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
parahaemolyticus HK385]
Length = 197
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 119/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L + RIIF+ + +A ++QL+ L D + DI +
Sbjct: 3 LVPMVVEQTPKGERSYDIFSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + LAIYD M++IKP V T+C G A S A +L+GG KG R+A+PNAR+M+
Sbjct: 63 YINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + + R A +GQP EKV TERD F+SA EAME
Sbjct: 123 HQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAQEAME 182
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 183 YGLIDKVL 190
>gi|114048055|ref|YP_738605.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
MR-7]
gi|123326387|sp|Q0HTK7.1|CLPP_SHESR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113889497|gb|ABI43548.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
MR-7]
Length = 202
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AI
Sbjct: 26 FDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAI 85
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 86 YDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIA 145
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +HK++ M A TGQP+E +++ T+RD F+SA +A+++GL+D ++
Sbjct: 146 IHAQEILGIKHKLNLMLAEHTGQPLEVIERDTDRDNFMSATQAVDYGLVDAVM 198
>gi|423557331|ref|ZP_17533634.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MC67]
gi|401193139|gb|EJR00146.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MC67]
Length = 193
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAERALEYGLIDKIF 190
>gi|434393622|ref|YP_007128569.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
gi|428265463|gb|AFZ31409.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
Length = 202
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ I+S +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQIDSNLANLIVAQLLFLDAEDSEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PNARIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPNARIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ AA T QPIE+++Q TERD F+S EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEYLAAHTDQPIERIEQDTERDFFMSPDEAKD 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDQVI 188
>gi|414075396|ref|YP_006994714.1| ATP-dependent ClpP protease [Anabaena sp. 90]
gi|413968812|gb|AFW92901.1| ATP-dependent ClpP protease [Anabaena sp. 90]
Length = 225
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ +VA ++QL+ L + D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDVVANSIVAQLLFLDSEDAEKDIQL 88
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTSGTAGKRMSLPDSRIMI 148
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++++ + TGQP+E+++ TERD F+SA EA
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKGELNQLMSKHTGQPLERIETDTERDFFMSAEEAKN 208
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 209 YGLIDQVI 216
>gi|260438109|ref|ZP_05791925.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
crossotus DSM 2876]
gi|292809590|gb|EFF68795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
crossotus DSM 2876]
Length = 194
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 120/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ + + A ++QL+ L D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSANIVVAQLLFLEAEDPGKDIQLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +L+GG KG R+A+PNA IM++QP GS G D+K
Sbjct: 79 DTMNYIKSDVSTICIGMAASMGAFLLSGGTKGKRFALPNAEIMIHQPSGGSRGMASDMKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ + ++ K++ + A TG+PI+ +++ T+RD +++A EA+E+GLID I+E
Sbjct: 139 VADQILKTKQKLNEILAKNTGKPIDVIERDTDRDNYMTAQEALEYGLIDSIIE 191
>gi|331003803|ref|ZP_08327295.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
oral taxon 107 str. F0167]
gi|330411995|gb|EGG91392.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
oral taxon 107 str. F0167]
Length = 193
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 120/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L ++RIIF+G+ +N + A ++Q++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDINLYINSPGGSVVAGMAI 77
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++K V T+C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMGAFLLAGGTKGKRYALPNAEIMIHQPSGGAQGQATEIR 137
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + ++ K++++ A T +PIE +++ TERD ++SA EA+++G+ID ++E
Sbjct: 138 IAAEQILKTKEKMNKILAENTNRPIEVIERDTERDNYMSAKEALDYGIIDKVIE 191
>gi|87201067|ref|YP_498324.1| ATP-dependent Clp protease proteolytic subunit [Novosphingobium
aromaticivorans DSM 12444]
gi|115311787|sp|Q2G3T3.1|CLPP_NOVAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|87136748|gb|ABD27490.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Novosphingobium aromaticivorans DSM 12444]
Length = 235
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 115/175 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+ + +A I+QL+ L + + DI MY+N PGG + + LAI
Sbjct: 43 FDIYSRLLRERIIFVTGEVEDHMASVIIAQLLFLESENPSKDISMYINSPGGVVTAGLAI 102
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +I+P+V TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 103 YDTMQYIRPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMIHQPSGGARGMASDIE 162
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ +Y FTG+ ++++++ +RD FL A EAM+FGL+D + E+
Sbjct: 163 IQAREILRIRKRMNDLYVKFTGRSLDEIEKAMDRDTFLEAEEAMKFGLVDKVFES 217
>gi|152977369|ref|YP_001376886.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
cytotoxicus NVH 391-98]
gi|152026121|gb|ABS23891.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cytotoxicus NVH 391-98]
Length = 193
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPNVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +++ T+RD F++A +A+E+GLID I
Sbjct: 139 AAKRILFLRDKLNKILAERTGQPLEVIERDTDRDNFMTAEKALEYGLIDRIF 190
>gi|389795694|ref|ZP_10198808.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
fulvus Jip2]
gi|388430346|gb|EIL87520.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
fulvus Jip2]
Length = 209
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ +N VA ++Q++ L + + D DI Y+N PGG++ + LAIY
Sbjct: 27 DIYSRLLKERVIFLVGEVNDQVANLLVAQMLFLESENPDKDIQFYINSPGGAVTAGLAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G A S + +L G KG RYA+PN+R+M++QP G+ G D++
Sbjct: 87 DTMQFIKPSVSTMCIGQACSMGSFLLMAGAKGKRYALPNSRVMIHQPSGGAQGQATDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R +++++YA TGQP+ K++ ERDRF+ A EA +GLID +LE
Sbjct: 147 QAREILYVRERLNKLYAEHTGQPLAKIELDMERDRFMDANEAKTYGLIDEVLE 199
>gi|229014309|ref|ZP_04171428.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
DSM 2048]
gi|229099577|ref|ZP_04230505.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-29]
gi|229105752|ref|ZP_04236381.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-28]
gi|229118641|ref|ZP_04247993.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock1-3]
gi|407707620|ref|YP_006831205.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Bacillus thuringiensis MC28]
gi|423377055|ref|ZP_17354339.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1O-2]
gi|423440156|ref|ZP_17417062.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4X2-1]
gi|423449686|ref|ZP_17426565.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5O-1]
gi|423463229|ref|ZP_17439997.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6O-1]
gi|423471294|ref|ZP_17448038.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6O-2]
gi|423490288|ref|ZP_17466970.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BtB2-4]
gi|423496012|ref|ZP_17472656.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
CER057]
gi|423497194|ref|ZP_17473811.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
CER074]
gi|423521016|ref|ZP_17497489.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA4-10]
gi|423532582|ref|ZP_17509000.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB2-9]
gi|423542155|ref|ZP_17518545.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB4-10]
gi|423548388|ref|ZP_17524746.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB5-5]
gi|423597605|ref|ZP_17573605.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD078]
gi|423613267|ref|ZP_17589127.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD107]
gi|423619156|ref|ZP_17594989.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD115]
gi|423621820|ref|ZP_17597598.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD148]
gi|423660050|ref|ZP_17635219.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM022]
gi|228664833|gb|EEL20323.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock1-3]
gi|228677641|gb|EEL31889.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-28]
gi|228683873|gb|EEL37823.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-29]
gi|228746909|gb|EEL96793.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
DSM 2048]
gi|401127967|gb|EJQ35674.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5O-1]
gi|401149848|gb|EJQ57315.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
CER057]
gi|401162914|gb|EJQ70267.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
CER074]
gi|401169492|gb|EJQ76738.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB4-10]
gi|401176062|gb|EJQ83260.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB5-5]
gi|401180113|gb|EJQ87276.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA4-10]
gi|401239137|gb|EJR45569.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD078]
gi|401242429|gb|EJR48804.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD107]
gi|401251869|gb|EJR58139.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD115]
gi|401262849|gb|EJR68986.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD148]
gi|401303711|gb|EJS09272.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM022]
gi|401639657|gb|EJS57394.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1O-2]
gi|402419927|gb|EJV52199.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4X2-1]
gi|402422100|gb|EJV54342.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6O-1]
gi|402429967|gb|EJV62049.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BtB2-4]
gi|402432774|gb|EJV64830.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6O-2]
gi|402464836|gb|EJV96524.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB2-9]
gi|407385305|gb|AFU15806.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis MC28]
Length = 193
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAERALEYGLIDKIF 190
>gi|218440073|ref|YP_002378402.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp.
PCC 7424]
gi|218172801|gb|ACK71534.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7424]
Length = 229
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 130/209 (62%), Gaps = 11/209 (5%)
Query: 63 KDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVA 118
K +CS KI SG + ++P V+ G D+ S L R RI+F+G I+ VA
Sbjct: 12 KSYCSP----KIYSGLQN---ILPVVIEQSGMGERAFDIYSRLLRERIVFLGTAIDDNVA 64
Query: 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 178
++QL+ L D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A
Sbjct: 65 DSIVAQLLYLDAEDPEKDIQIYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGA 124
Query: 179 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQP 238
+L+GG KG R A+P+AR+M++QP G+ G ++ Q E + + +++ + A TGQP
Sbjct: 125 FLLSGGAKGKRMALPSARMMIHQPIGGAQGQAVEIDIQAKEILYIKQRLNTLLAEHTGQP 184
Query: 239 IEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+++ + TERD ++SA +A +GLID ++
Sbjct: 185 YDRIAEDTERDFYMSAYDAKNYGLIDQVI 213
>gi|403745050|ref|ZP_10954078.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus hesperidum URH17-3-68]
gi|403121705|gb|EJY55982.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus hesperidum URH17-3-68]
Length = 193
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 116/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ +G I+ VA ++QL+ LA D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIVLLGTAIDDNVANAIVAQLLFLAADDPEKDIQLYINSPGGSVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + I+P V T+C G+AAS A +LA GEKG RYA+PNA IM++QP G G D++
Sbjct: 79 DTIQHIRPAVSTMCVGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLGGVQGQASDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ ++ K++R+ A TGQP+E +++ T+RD F+SA EA +GLID +L T
Sbjct: 139 HAEWMLKTKDKLNRLLAERTGQPLEVIERDTDRDNFMSADEAKAYGLIDEVLGT 192
>gi|260222837|emb|CBA32804.1| ATP-dependent Clp protease proteolytic subunit [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 220
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+ + +AIY
Sbjct: 45 DIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVSAGMAIY 104
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+++PN+++M++QP G+ G +++
Sbjct: 105 DTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKVMIHQPLGGTQGQATEIEI 164
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +R +++++ A TGQP+EK+++ TERD +LSA EA E+GL+D ++
Sbjct: 165 HAREILKTREQLNKILAERTGQPLEKIERDTERDYYLSADEAKEYGLVDQVI 216
>gi|261855007|ref|YP_003262290.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Halothiobacillus neapolitanus c2]
gi|261835476|gb|ACX95243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Halothiobacillus neapolitanus c2]
Length = 210
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R++F+ PI +A ++QL+ L + + D DI +Y+N PGG + + ++IY
Sbjct: 35 DIYSRLLKERVVFVVGPIEDHMANLIVAQLLFLESENPDKDIHLYINSPGGVVTAGMSIY 94
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L+GGE G R+A+PN+R+M++QP G G D+K
Sbjct: 95 DTMQFIKPHVSTLCIGQAASMGSILLSGGEPGKRFALPNSRVMIHQPLGGFQGQASDIKI 154
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + RH ++ + A QP+E +++ T+RD+FLSA+EA+E+GLID +L+
Sbjct: 155 HAEEIIKLRHSLNGVLAKHCNQPMEVIERDTDRDKFLSASEAVEYGLIDAVLD 207
>gi|428223754|ref|YP_007107851.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geitlerinema
sp. PCC 7407]
gi|427983655|gb|AFY64799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geitlerinema
sp. PCC 7407]
Length = 229
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 131/205 (63%), Gaps = 7/205 (3%)
Query: 67 STEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAI 122
S+ ++ I +G ++ ++P V+ G D+ S L R RIIF+G P++ VA +
Sbjct: 12 SSLQAHNIYAGPSN---IVPMVVEQSGRGERAFDIYSRLLRERIIFLGTPVDDAVADSIV 68
Query: 123 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 182
+QL+ L D + DI +Y+N PGGS+ + +AIYD M ++P V T+CFG+AAS A +LA
Sbjct: 69 AQLLFLEADDPEKDIQIYINSPGGSVTAGMAIYDTMQQVRPDVVTICFGLAASMGAFLLA 128
Query: 183 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV 242
G +G R ++PN+RIM++QP G+ G D++ Q E + + +++ + + TGQP++++
Sbjct: 129 SGARGKRLSLPNSRIMIHQPLGGAQGQAVDIEIQAREILYHKRRLNELLSHHTGQPLDRL 188
Query: 243 QQYTERDRFLSAAEAMEFGLIDGIL 267
+ TERD F+SA EA +GLID ++
Sbjct: 189 EVDTERDFFMSAEEACNYGLIDQVI 213
>gi|239623656|ref|ZP_04666687.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47_FAA]
gi|239521687|gb|EEQ61553.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47FAA]
Length = 193
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +LAGG KG R+A+PN+ IM++QP G+ G ++K
Sbjct: 79 DTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRFALPNSEIMIHQPSGGAKGQATEIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++ + AA TG+PIE +++ TERD ++SA EA E+GLID I+
Sbjct: 139 VAENILKTRKKLNDILAANTGRPIEVIERDTERDNYMSAEEAKEYGLIDEII 190
>gi|351729533|ref|ZP_08947224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
radicis N35]
Length = 202
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+ + +AI+
Sbjct: 27 DIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVSAGMAIF 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+++M++QP G G +++
Sbjct: 87 DTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALPNSKVMIHQPLGGMQGQATEIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +R +++++ A TGQP+EK+Q+ TERD FLSA E+ E+GL+D ++
Sbjct: 147 HAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSADESKEYGLVDQVI 198
>gi|392954369|ref|ZP_10319921.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrocarboniphaga effusa AP103]
gi|391858268|gb|EIT68798.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrocarboniphaga effusa AP103]
Length = 193
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 117/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIFI PI+ +A ++Q++ L + + D DI +Y+N PGG I + L+IY
Sbjct: 14 DIYSRLLKERIIFIVGPIDDYMANIVVAQMLFLESENPDKDIHLYINSPGGIITAGLSIY 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A +L+ G KG RY++P++RIM++QP G+ G DV+
Sbjct: 74 DTMKFIKPDVATMCIGQAASMGAFLLSAGTKGKRYSLPHSRIMIHQPSGGAQGTAADVEI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++++ A TGQPIE++ + ERD F+SA A ++G+ID ILET
Sbjct: 134 QAKEILYLRERLNKLMADHTGQPIERIAKDVERDYFMSAEAARDYGMIDRILET 187
>gi|323484460|ref|ZP_08089826.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
symbiosum WAL-14163]
gi|323692476|ref|ZP_08106710.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
symbiosum WAL-14673]
gi|355628696|ref|ZP_09049918.1| ATP-dependent Clp protease proteolytic subunit [Clostridium sp.
7_3_54FAA]
gi|323402238|gb|EGA94570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
symbiosum WAL-14163]
gi|323503473|gb|EGB19301.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
symbiosum WAL-14673]
gi|354819586|gb|EHF04027.1| ATP-dependent Clp protease proteolytic subunit [Clostridium sp.
7_3_54FAA]
Length = 193
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ + A +SQL+ L + D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIFSRLLKERIIFLGEEVTDTSAGLIVSQLLFLESEDPNKDIHLYINSPGGSVSAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+CFG+AAS A +LAGG KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTMNYIKCDVSTICFGMAASMGAFLLAGGAKGKRFALPNAEVMIHQPSGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ K++ + AA TGQP E +++ T+RD +++A EAME+GLID ++
Sbjct: 139 VAEKILQTKKKLNEILAANTGQPYEVIERDTDRDNYMTAQEAMEYGLIDRVI 190
>gi|125975222|ref|YP_001039132.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum ATCC 27405]
gi|256003116|ref|ZP_05428108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum DSM 2360]
gi|281419196|ref|ZP_06250212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum JW20]
gi|385777706|ref|YP_005686871.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum DSM 1313]
gi|419722741|ref|ZP_14249878.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum AD2]
gi|419726242|ref|ZP_14253265.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum YS]
gi|166201818|sp|A3DJ10.1|CLPP_CLOTH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|125715447|gb|ABN53939.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum ATCC 27405]
gi|255992807|gb|EEU02897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum DSM 2360]
gi|281407062|gb|EFB37324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum JW20]
gi|316939386|gb|ADU73420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum DSM 1313]
gi|380770294|gb|EIC04191.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum YS]
gi|380781121|gb|EIC10782.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum AD2]
Length = 194
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN + A ++Q++ L D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIVLSDEINDVTASLVVAQMLFLEAEDPDKDIQLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D+K
Sbjct: 79 DTMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGARGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + ++K++R+ + TGQP EK+++ TERD F+SA EA +G++D ++E
Sbjct: 139 HAEQIIKIKNKLNRILSERTGQPFEKIERDTERDFFMSAEEAKAYGIVDEVME 191
>gi|121611285|ref|YP_999092.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Verminephrobacter eiseniae EF01-2]
gi|166214720|sp|A1WR17.1|CLPP_VEREI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|121555925|gb|ABM60074.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Verminephrobacter eiseniae EF01-2]
Length = 202
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + R+IF+ P+N A ++QL+ L + + D DI
Sbjct: 11 MIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISF 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AI+D M++IKP V T+C G+AAS A +LA G KG R+A+PN+++M+
Sbjct: 71 YINSPGGSVSAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALPNSKVMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G +++ E + +R +++++ A TGQP+EK+Q+ TERD FLSA E+ E
Sbjct: 131 HQPLGGMQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSADESRE 190
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 191 YGLVDQVI 198
>gi|126700924|ref|YP_001089821.1| ATP-dependent Clp protease proteolytic subunit 1 [Clostridium
difficile 630]
gi|254976904|ref|ZP_05273376.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-66c26]
gi|255094290|ref|ZP_05323768.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CIP 107932]
gi|255308377|ref|ZP_05352548.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile ATCC 43255]
gi|255316044|ref|ZP_05357627.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-76w55]
gi|255518701|ref|ZP_05386377.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-97b34]
gi|255651823|ref|ZP_05398725.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-37x79]
gi|255657263|ref|ZP_05402672.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-23m63]
gi|260684849|ref|YP_003216134.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CD196]
gi|260688507|ref|YP_003219641.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile R20291]
gi|296451896|ref|ZP_06893613.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP08]
gi|296879709|ref|ZP_06903684.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP07]
gi|306521610|ref|ZP_07407957.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-32g58]
gi|384362518|ref|YP_006200370.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile BI1]
gi|423081791|ref|ZP_17070390.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 002-P50-2011]
gi|423085912|ref|ZP_17074347.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 050-P50-2011]
gi|423089385|ref|ZP_17077744.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 70-100-2010]
gi|115252361|emb|CAJ70202.1| ATP-dependent Clp protease proteolytic subunit 1 [Clostridium
difficile 630]
gi|260211012|emb|CBA66324.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CD196]
gi|260214524|emb|CBE07039.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile R20291]
gi|296259278|gb|EFH06156.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP08]
gi|296429298|gb|EFH15170.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP07]
gi|357548303|gb|EHJ30169.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 050-P50-2011]
gi|357549864|gb|EHJ31702.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 002-P50-2011]
gi|357558182|gb|EHJ39684.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 70-100-2010]
Length = 194
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 117/188 (62%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+G +N A ++QL+ L D D DI +
Sbjct: 3 LVPVVVEQTGRGERSYDIFSRLLKDRIIFLGDQVNDATAGLIVAQLLFLEAEDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI S +AIYD M +IKP V T+C G+AAS A +LA G KG R A+PN+ IM+
Sbjct: 63 YINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRLALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + + ++ + + TGQP+EK++ TERD F+SA EA E
Sbjct: 123 HQPLGGAQGQATDIEIHAKRILKIKETLNEILSERTGQPLEKIKMDTERDNFMSALEAKE 182
Query: 260 FGLIDGIL 267
+GLID +
Sbjct: 183 YGLIDEVF 190
>gi|403380350|ref|ZP_10922407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JC66]
Length = 193
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
+P V+ P D+ S L ++RIIF+G PIN VA I+QL+ L D++ DI +
Sbjct: 3 FIPMVVEPDARGERAYDIYSRLLKDRIIFLGTPINDQVANAVIAQLLFLDAQDQEKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI + +AI+D M +IK V T+C G+AAS A +LA GE G RYA+PN+ IM+
Sbjct: 63 YINSPGGSISAGMAIFDTMQFIKSDVSTICVGLAASMGAFLLAAGEIGKRYALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + + R K++ + A T QP+E++++ T+RD F+ A +A E
Sbjct: 123 HQPLGGAEGQASDIEIRAKRILRMREKLNHILAERTKQPLERIEKDTDRDYFMWADQAKE 182
Query: 260 FGLIDGILET 269
+G+ID ++++
Sbjct: 183 YGIIDKVIQS 192
>gi|317970010|ref|ZP_07971400.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CB0205]
Length = 196
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G+P+ S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSESANRIVAQLLFLEAEDPEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLTHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + K+++ + TGQP+ +++ T+RD F+S AEA+E
Sbjct: 121 HQPLGGAQGQASDIRIQADEILYLKKKLNQELSDRTGQPLNRIEDDTDRDFFMSPAEAVE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDKVID 189
>gi|452991802|emb|CCQ96761.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
ultunense Esp]
Length = 194
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G +N + A ++QL+ L D D DI +Y+N PGG++ + AIY
Sbjct: 19 DIYSRLLKERIIFLGGEVNDVTADLIVAQLLFLEAEDPDKDIQLYINSPGGAVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A +LA G KG R+++PN+ IM++QP G+ G ED++
Sbjct: 79 DTMQYIKPDVSTICIGRAASMGAFLLAAGAKGKRFSLPNSDIMIHQPLGGTQGQAEDIRI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +R I+++ + TGQP+EK+ + T+RD F++A EA E+G+ID +++
Sbjct: 139 HAEKIIQTRELINKILSERTGQPLEKISRDTDRDFFMTAKEAKEYGIIDKVIQ 191
>gi|429728764|ref|ZP_19263468.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptostreptococcus anaerobius VPI 4330]
gi|429147739|gb|EKX90761.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptostreptococcus anaerobius VPI 4330]
Length = 217
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 120/192 (62%), Gaps = 4/192 (2%)
Query: 80 DNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDA 135
DN L+P V+ G D+ S L ++RIIF+G +N A ++Q++ L D D
Sbjct: 22 DNMALVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDQTASLVVAQMLFLEADDPDK 81
Query: 136 DILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 195
DI +Y+N PGGS+ + +AIYD M +IK V T+C G+AAS A +LA G KG RYA+PN+
Sbjct: 82 DIHLYINSPGGSVTAGMAIYDTMQYIKADVSTICVGMAASMGAFLLAAGAKGKRYALPNS 141
Query: 196 RIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255
+M++QP G+ G D++ + + K++++ A TGQ +E V+ TERD F++A
Sbjct: 142 TVMIHQPLGGTRGQATDIEIHTKYLLSIKEKLNKILAERTGQDLETVKANTERDNFMTAD 201
Query: 256 EAMEFGLIDGIL 267
EA +FGLID ++
Sbjct: 202 EARDFGLIDEVI 213
>gi|218133242|ref|ZP_03462046.1| hypothetical protein BACPEC_01107 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992115|gb|EEC58119.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[[Bacteroides] pectinophilus ATCC 43243]
Length = 193
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 118/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ + + A ++QL+ L + D DI Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSASLIVAQLLFLESEDPGKDINFYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+++K V T+C G+AAS A +L+GG KG R A+PNA IM++QP G+ G D+K
Sbjct: 79 DTMNYVKCDVSTICIGMAASMGAFLLSGGTKGKRLALPNAEIMIHQPSGGAQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +RHK++ + AA TG+P++ + TERD ++SA EA+E+GLID ++E
Sbjct: 139 VSDHIIKTRHKLNTILAANTGKPLDVIAVDTERDNYMSAQEAVEYGLIDSVIE 191
>gi|312796430|ref|YP_004029352.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
[Burkholderia rhizoxinica HKI 454]
gi|312168205|emb|CBW75208.1| ATP-dependent endopeptidase clp proteolytic subunit clpP (EC
3.4.21.92) [Burkholderia rhizoxinica HKI 454]
Length = 238
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 47 LVPMVVETSGRGERAYDIYSRLLKERLVFLVGEVNDQAANLVVAQLLFLESENPDKDISL 106
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R A+PNAR+M+
Sbjct: 107 YINSPGGSVSAGMAIYDTMQFIKPDVTTLCMGLAASMGAFLLAAGAKGKRIALPNARVMI 166
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A TGQP+E++Q+ T+RD F+SA +A
Sbjct: 167 HQPLGGARGQASDIEIQAREILFLKERLNNLLAQHTGQPVEQIQRDTDRDNFMSAEDAQA 226
Query: 260 FGLIDGILE 268
+GLID +L
Sbjct: 227 YGLIDQVLH 235
>gi|407939906|ref|YP_006855547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
sp. KKS102]
gi|407897700|gb|AFU46909.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Acidovorax
sp. KKS102]
Length = 202
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+ + +AI+
Sbjct: 27 DIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVSAGMAIF 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+++M++QP G G +++
Sbjct: 87 DTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALPNSKVMIHQPLGGMQGQATEIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +R +++++ A TGQP+EK+Q+ TERD FLSA EA ++GL+D ++
Sbjct: 147 HAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSADEAKDYGLVDQVI 198
>gi|126173838|ref|YP_001049987.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS155]
gi|153000122|ref|YP_001365803.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS185]
gi|160874744|ref|YP_001554060.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS195]
gi|217973910|ref|YP_002358661.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS223]
gi|373948994|ref|ZP_09608955.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS183]
gi|378707997|ref|YP_005272891.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS678]
gi|386325167|ref|YP_006021284.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
BA175]
gi|386340598|ref|YP_006036964.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS117]
gi|418023625|ref|ZP_12662610.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS625]
gi|166214708|sp|A3D305.1|CLPP_SHEB5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214709|sp|A6WLQ1.1|CLPP_SHEB8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082464|sp|A9KWH7.1|CLPP_SHEB9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763799|sp|B8E5E9.1|CLPP_SHEB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|125997043|gb|ABN61118.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
baltica OS155]
gi|151364740|gb|ABS07740.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS185]
gi|160860266|gb|ABX48800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS195]
gi|217499045|gb|ACK47238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS223]
gi|315266986|gb|ADT93839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS678]
gi|333819312|gb|AEG11978.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
BA175]
gi|334862999|gb|AEH13470.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS117]
gi|353537508|gb|EHC07065.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS625]
gi|373885594|gb|EHQ14486.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS183]
Length = 202
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 27 DIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + ++K+++M A TGQP+E V++ T+RD F+SA +A+E+GL+D ++
Sbjct: 147 HAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
>gi|334118528|ref|ZP_08492617.1| ATP-dependent Clp protease proteolytic subunit [Microcoleus
vaginatus FGP-2]
gi|333459535|gb|EGK88148.1| ATP-dependent Clp protease proteolytic subunit [Microcoleus
vaginatus FGP-2]
Length = 229
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 121/191 (63%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G P+ VA ++QL+ L D + D+ M
Sbjct: 26 VVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVTDEVADSIVAQLLYLDAEDPEKDVQM 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M I+P V T+C+G+AAS A +L G G R ++P++RIM+
Sbjct: 86 YINSPGGSVTAGMAIYDTMQQIRPDVVTICYGLAASMGAFLLTAGAHGKRMSLPSSRIMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++++ A TGQP++K++ TERD F+SA EA
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYHKRKLNQLLAHHTGQPLDKLEADTERDFFMSAEEAKN 205
Query: 260 FGLIDGILETE 270
+GL+D ++ E
Sbjct: 206 YGLVDRVIAKE 216
>gi|319943618|ref|ZP_08017899.1| ATP-dependent Clp protease proteolytic subunit [Lautropia mirabilis
ATCC 51599]
gi|319742851|gb|EFV95257.1| ATP-dependent Clp protease proteolytic subunit [Lautropia mirabilis
ATCC 51599]
Length = 262
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R++F+ P+ A A++Q++ L + + D DI Y+N PGGS+ + L I+
Sbjct: 76 DIYSRLLRERVVFLVGPVMDQSANLAVAQMLYLESENPDKDIHFYINSPGGSVSAGLGIF 135
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G AAS A +LA G KG R+++PN+RIM++QP G+ G D++
Sbjct: 136 DTMQFVKPDVSTLCIGFAASMGAFLLAAGAKGKRHSLPNSRIMIHQPSGGAQGQASDIEI 195
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++++ A TGQP+E++++ TERD F+SA EA+E+GLID ++
Sbjct: 196 HAKEIIYLRKRLNQILADRTGQPLERIERDTERDNFMSADEALEYGLIDKVM 247
>gi|304437034|ref|ZP_07396997.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304369985|gb|EFM23647.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 203
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ EK+ TERD F+SA EA E+GLID ++
Sbjct: 140 QAKEILRLREVGNEILAHHTGQDTEKINVDTERDNFMSAEEAKEYGLIDEVV 191
>gi|410693928|ref|YP_003624550.1| ATP-dependent Clp protease proteolytic subunit precursor
(Endopeptidase Clp) (Caseinolytic protease) (Protease
Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
gi|294340353|emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit precursor
(Endopeptidase Clp) (Caseinolytic protease) (Protease
Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
Length = 202
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 123/191 (64%), Gaps = 4/191 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L R R+IF+ PIN +A ++QL+ L + + D D
Sbjct: 8 NLGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKD 67
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGGS+ + +AI+D M +IKP V T+C G+AAS A ++A G KG RY++PN+R
Sbjct: 68 ISLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSR 127
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
IM++QP G+ G D++ Q E + R +++ + A TGQ +EK+ TERD F+SA E
Sbjct: 128 IMIHQPSGGAQGQATDIEIQAREILYLRERLNGILAERTGQTLEKIGIDTERDFFMSADE 187
Query: 257 AMEFGLIDGIL 267
A ++GLID ++
Sbjct: 188 AKDYGLIDEVI 198
>gi|356531505|ref|XP_003534318.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like [Glycine max]
Length = 306
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 122/188 (64%)
Query: 83 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
P P+ G D+ +L R RI+F+G I+ VA +SQ++ L D DI +++N
Sbjct: 80 PQTPSTAARGAEGDVMGLLLRERIVFLGSSIDDFVADAIMSQMLLLDAQDPTKDIRLFIN 139
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
GGS+ + +AIYD + ++ V TV G+AAS A++IL GG KG R+AMPN RIM++QP
Sbjct: 140 STGGSLSATMAIYDAVQLVRADVSTVALGIAASTASVILGGGTKGKRFAMPNTRIMIHQP 199
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
G+ G DV+ Q E + +++ I R+ ++FTG+ E+VQ+ +RD+++S EA+E+G+
Sbjct: 200 LGGASGQAIDVEIQAKEVMHNKNNITRIISSFTGRSFEQVQKDIDRDKYMSPIEAVEYGI 259
Query: 263 IDGILETE 270
IDG+++ +
Sbjct: 260 IDGVIDRD 267
>gi|307244056|ref|ZP_07526175.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Peptostreptococcus stomatis DSM 17678]
gi|306492580|gb|EFM64614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Peptostreptococcus stomatis DSM 17678]
Length = 194
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+G +N A ++QL+ L D D DI +
Sbjct: 3 LVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDATASLVVAQLLFLEADDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +LA G KG RYA+PN+ IM+
Sbjct: 63 YINSPGGSVTAGLAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSTIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP GS G DV+ + ++ K++ + + TGQP + V++ TERD F++A +
Sbjct: 123 HQPLGGSRGQATDVEIHTKFLLNTKEKLNTILSQRTGQPYDVVKENTERDNFMTADQGQA 182
Query: 260 FGLIDGILE 268
FG+ID ++E
Sbjct: 183 FGIIDHVIE 191
>gi|428770773|ref|YP_007162563.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
aponinum PCC 10605]
gi|428685052|gb|AFZ54519.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
aponinum PCC 10605]
Length = 196
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ + +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETSGRGDRAFDIYSRLLRERIIFLGQQVTDELANSLVAQLLLLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L I+D M+ IKP V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIKPDVCTICVGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A+ TGQP++K+++ TERD F+SA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKQLNHYMASHTGQPLDKIEEDTERDFFMSAEEARD 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDRVV 188
>gi|385784973|ref|YP_005761146.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
lugdunensis N920143]
gi|339895229|emb|CCB54551.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus lugdunensis N920143]
Length = 195
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDFEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ A TGQ IE++Q+ T+RD FL+A EA +GLID ++E E
Sbjct: 139 AANHILKTREKLNRILAERTGQSIEQIQKDTDRDNFLTAEEAKAYGLIDEVMEPE 193
>gi|160936367|ref|ZP_02083736.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
BAA-613]
gi|158440650|gb|EDP18388.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
BAA-613]
Length = 193
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +L+GG KG R+A+PNA IM++QP G+ G ++K
Sbjct: 79 DTMNYIKCDVSTICIGMAASMGAFLLSGGAKGKRFALPNAEIMIHQPSGGAKGQATEIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++ + AA TG+P+E +++ TERD ++SA EA E+GLID I+
Sbjct: 139 VAENILKTRKKLNEILAANTGKPLEVIERDTERDNYMSALEAKEYGLIDEII 190
>gi|388566136|ref|ZP_10152607.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenophaga sp. PBC]
gi|388266642|gb|EIK92161.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenophaga sp. PBC]
Length = 205
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 121/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R++F+ P+N A ++QL+ L + + D DI Y+N PGGS+ + +AI+
Sbjct: 27 DIYSRLLKERVVFLVGPVNDQSANLIVAQLLFLESENPDKDISFYINSPGGSVSAGMAIF 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+++PN+++M++QP G+ G +++
Sbjct: 87 DTMNFIKPDVSTLCVGMAASMGAFLLAAGTKGKRFSLPNSKVMIHQPLGGTQGQATEIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + +R +++++ A TGQP+EK+++ TERD +LSAAE+ E+GLID +++
Sbjct: 147 HAREILKTREQLNKILAERTGQPLEKIERDTERDYYLSAAESAEYGLIDKVID 199
>gi|374977816|pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977817|pdb|3V5I|B Chain B, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977818|pdb|3V5I|C Chain C, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977819|pdb|3V5I|D Chain D, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977820|pdb|3V5I|E Chain E, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977821|pdb|3V5I|F Chain F, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977822|pdb|3V5I|G Chain G, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977823|pdb|3V5I|H Chain H, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977824|pdb|3V5I|I Chain I, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977825|pdb|3V5I|J Chain J, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977826|pdb|3V5I|K Chain K, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977827|pdb|3V5I|L Chain L, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977828|pdb|3V5I|M Chain M, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977829|pdb|3V5I|N Chain N, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977830|pdb|3V5I|O Chain O, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977831|pdb|3V5I|P Chain P, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977832|pdb|3V5I|Q Chain Q, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977833|pdb|3V5I|R Chain R, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977834|pdb|3V5I|S Chain S, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977835|pdb|3V5I|T Chain T, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977836|pdb|3V5I|U Chain U, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977837|pdb|3V5I|V Chain V, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977838|pdb|3V5I|W Chain W, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977839|pdb|3V5I|X Chain X, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977840|pdb|3V5I|Y Chain Y, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977841|pdb|3V5I|Z Chain Z, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977842|pdb|3V5I|AA Chain a, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
gi|374977843|pdb|3V5I|BB Chain b, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
Length = 203
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AA+ + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL--ETEY 271
N + +R K++R+ + TGQ IEK+Q+ T+RD FL+A EA E+GLID ++ ET++
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETKW 196
>gi|395762551|ref|ZP_10443220.1| ATP-dependent Clp protease proteolytic subunit [Janthinobacterium
lividum PAMC 25724]
Length = 205
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 125/188 (66%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R+IF+ P+N +A ++QL+ L + + + +I +
Sbjct: 14 LVPMVVEQSGRGERSYDIYSRLLKERLIFMVGPVNDQMANLVVAQLLFLESENPEKEISL 73
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 74 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMI 133
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP GS G D++ Q E + R +++ + A TGQ IE++ + T+RDRF+SA EA+E
Sbjct: 134 HQPSGGSQGMASDIEIQAREILYLRTRLNGIMAERTGQSIEQIAKDTDRDRFMSADEAVE 193
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 194 YGLIDKVL 201
>gi|428213615|ref|YP_007086759.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
acuminata PCC 6304]
gi|428001996|gb|AFY82839.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
acuminata PCC 6304]
Length = 201
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 127/189 (67%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RI+F+GQ +++ +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVDADLANLIVAQLLFLEAEDAEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNHIRPDVSTICLGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + + TGQP+E+++Q TERD F+SA E+++
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKKRLNTLLSEHTGQPLERIEQDTERDFFMSAKESVD 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDLVID 189
>gi|52082006|ref|YP_080797.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319647870|ref|ZP_08002088.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus sp.
BT1B_CT2]
gi|404490886|ref|YP_006714992.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423684010|ref|ZP_17658849.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
licheniformis WX-02]
gi|67460468|sp|Q65EI5.1|CLPP1_BACLD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|52005217|gb|AAU25159.1| ATP-dependent Clp protease proteolytic subunit (class III
heat-shock protein) [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52349895|gb|AAU42529.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317390211|gb|EFV71020.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus sp.
BT1B_CT2]
gi|383440784|gb|EID48559.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
licheniformis WX-02]
Length = 198
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +++ T+RD F +A EA E+GLID +L
Sbjct: 139 AAKRILSLRDKLNKILAERTGQPLEVIERDTDRDNFKTAEEAKEYGLIDKVL 190
>gi|222624791|gb|EEE58923.1| hypothetical protein OsJ_10573 [Oryza sativa Japonica Group]
Length = 282
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 115/169 (68%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G P+ +A ++QL+ L ID + DI+MY+N PGGS+ + +AI+D M
Sbjct: 100 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTM 159
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 160 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 219
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQP++K+ T+RD F+SA EA E+GLIDG++
Sbjct: 220 EMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVI 268
>gi|297600816|ref|NP_001049902.2| Os03g0308100 [Oryza sativa Japonica Group]
gi|63003513|dbj|BAD98161.1| ATP-dependent protease [Oryza sativa Japonica Group]
gi|108707751|gb|ABF95546.1| ATP-dependent Clp protease proteolytic subunit 1, putative,
expressed [Oryza sativa Japonica Group]
gi|215740983|dbj|BAG97478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765780|dbj|BAG87477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674452|dbj|BAF11816.2| Os03g0308100 [Oryza sativa Japonica Group]
Length = 282
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 115/169 (68%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G P+ +A ++QL+ L ID + DI+MY+N PGGS+ + +AI+D M
Sbjct: 100 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTM 159
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 160 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 219
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQP++K+ T+RD F+SA EA E+GLIDG++
Sbjct: 220 EMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVI 268
>gi|154506030|ref|ZP_02042768.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149]
gi|336433385|ref|ZP_08613205.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 2_1_58FAA]
gi|153793529|gb|EDN75949.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Ruminococcus gnavus ATCC 29149]
gi|336016316|gb|EGN46103.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 193
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPNKDIQLYINSPGGSVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V TVC G+AAS A +L+GG KG R+A+PNA IM++QP G+ G ++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLSGGAKGKRFALPNAEIMIHQPSGGAQGQATEISI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++ + AA TGQP+E ++ TERD F+SA EA +GLID ++
Sbjct: 139 AAEHILRTRQKLNEIMAANTGQPLETIKADTERDNFMSAEEAKAYGLIDEVI 190
>gi|223994545|ref|XP_002286956.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978271|gb|EED96597.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 260
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 122/189 (64%)
Query: 82 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 141
PP +P V G LD+ S L ++RI+ +G +N VA ++QL+ LA D + DI +Y+
Sbjct: 58 PPTLPTVEGGSGQLDVISRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPEKDITLYI 117
Query: 142 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 201
N PGGS+ + LAIYD M +I V TVCFG+AAS A +L G G R ++PNARIM++Q
Sbjct: 118 NSPGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQ 177
Query: 202 PQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFG 261
P G+ G D++ Q E + + +++ A + QP+EK+++ T+RD F++ EA ++G
Sbjct: 178 PLGGAQGQAADIEIQAKEILFVKACLNKYIAEYCDQPVEKIEEDTDRDFFMTPYEAQDYG 237
Query: 262 LIDGILETE 270
+ID +++T+
Sbjct: 238 IIDEVIKTK 246
>gi|81301334|ref|YP_401542.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 7942]
gi|81170215|gb|ABB58555.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
elongatus PCC 7942]
Length = 244
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 137/234 (58%), Gaps = 10/234 (4%)
Query: 38 LPSPYGDSSSGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGG---- 93
+PS S + L I +R L +D + + + I+G ++P V+ G
Sbjct: 1 MPSSMFSSHASLPIHSRRLAAGLDSR---WQQPQIQAIAGSQ---AIVPTVVEQSGRGER 54
Query: 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA 153
D+ S L R RI+F+G ++ VA ++QL+ L D + DI +Y+N PGGS+ + +A
Sbjct: 55 AFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMA 114
Query: 154 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 213
IYD M + P V T+CFG+AAS A +L+GG +G R A+P+ARIM++QP G+ G D+
Sbjct: 115 IYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDI 174
Query: 214 KRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ Q E + + ++ + A TGQP+EK++ T+RD F+S EA +GLID +L
Sbjct: 175 EIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 228
>gi|251794211|ref|YP_003008942.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
gi|247541837|gb|ACS98855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
Length = 195
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 118/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGSGVNDVVANSIIAQMLFLAAEDPEKDISLYINSPGGSITAGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G G RYA+PN+ +M++QP G+ G D++
Sbjct: 81 DTMQYIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEVMIHQPLGGAEGQASDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R K++ + A +GQP+E++++ T+RD F+SA EA ++GL+D ++E
Sbjct: 141 RARRIIKMRDKLNGILAERSGQPLERIEKDTDRDYFMSAEEARQYGLVDKVIE 193
>gi|72383092|ref|YP_292447.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. NATL2A]
gi|115311351|sp|Q46ID4.1|CLPP3_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|72002942|gb|AAZ58744.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. NATL2A]
Length = 194
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G +N VA ++Q++ L D + DI +
Sbjct: 1 MLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PN+RIM+
Sbjct: 61 YVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ Q E + + ++ + A TGQ I+K+ + T+RD FLS EA+E
Sbjct: 121 HQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVE 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDKVV 188
>gi|206890175|ref|YP_002248104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|226706554|sp|B5YI38.1|CLPP_THEYD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|206742113|gb|ACI21170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 195
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG IN VA I+QL+ L T D + DI +Y+N PGG + S LAIY
Sbjct: 19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPGGMVSSGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP + T C G A+S A ++LA G KG R+A+P++R+M++QP G G DV+
Sbjct: 79 DTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQPIGGFYGQATDVEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ + A TGQPIEK+Q+ TERD F+SA EA +G++D ++
Sbjct: 139 HAKEILKMKDLLNNILAKHTGQPIEKIQKDTERDFFMSAEEAKLYGIVDEVI 190
>gi|224179483|ref|YP_002601006.1| proteolytic subunit 2 of clp protease [Monomastix sp. OKE-1]
gi|217314526|gb|ACK36869.1| proteolytic subunit 2 of clp protease [Monomastix sp. OKE-1]
Length = 201
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 119/184 (64%), Gaps = 4/184 (2%)
Query: 87 AVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
A PG P +DL + L+R R++F+G ++ +A + + ++ L+ DE I +Y+N
Sbjct: 9 AFRLPGEPTPQWIDLYNRLYRERVLFLGSDLDDELANQLVGIMIYLSAEDESKRIFIYIN 68
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
PGGS+ LA+YD M I+ +V T+C G+AAS A+ +LAGGE+G R A+P++R+M++QP
Sbjct: 69 SPGGSVTCGLAVYDAMHHIQARVTTLCIGIAASMASFVLAGGERGHRIALPHSRVMIHQP 128
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
Q GS G DV + E + R +I R+YA TGQ + + + +RDRF+SA EA EFGL
Sbjct: 129 QGGSQGQASDVTAEAEEVMRIRRQIGRIYAERTGQSLATIAKSMDRDRFMSAKEAKEFGL 188
Query: 263 IDGI 266
+D +
Sbjct: 189 VDQV 192
>gi|402557004|ref|YP_006598275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus FRI-35]
gi|401798214|gb|AFQ12073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus FRI-35]
Length = 193
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 114/175 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G+AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIKPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQPIEK+ Q TERD F++A EA E+G++DG++E +
Sbjct: 139 TAKRILKLKHDINKIIADRTGQPIEKIAQDTERDYFMTAEEAKEYGIVDGVVEKK 193
>gi|195640846|gb|ACG39891.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
gi|413955932|gb|AFW88581.1| ATP-dependent Clp protease proteolytic subunit isoform 1 [Zea mays]
gi|413955933|gb|AFW88582.1| ATP-dependent Clp protease proteolytic subunit isoform 2 [Zea mays]
Length = 281
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 115/169 (68%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G P+ +A ++QL+ L ID + DI+MY+N PGGS+ + +AI+D M
Sbjct: 99 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTM 158
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 159 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 218
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQP++K+ T+RD F+SA EA E+GLIDG++
Sbjct: 219 EMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVI 267
>gi|226494171|ref|NP_001140458.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
gi|194699596|gb|ACF83882.1| unknown [Zea mays]
gi|195624444|gb|ACG34052.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
gi|414867979|tpg|DAA46536.1| TPA: ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 289
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ +L R RI+F+G I +A +SQL+ L ID D+DI +++N PGGS+ + +AIY
Sbjct: 76 DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++ V T+ G+A S A+IIL GG KG R+AMPN RIM++QP G+ G DV+
Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 195
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ + R+ + FTG+ E+V++ +RDR++ EA+++GLIDG+++ +
Sbjct: 196 QAKEILTNKRNVIRIVSGFTGRTPEQVEKDIDRDRYMGPLEAVDYGLIDGVIDGD 250
>gi|329894939|ref|ZP_08270738.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium IMCC3088]
gi|328922668|gb|EGG30003.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium IMCC3088]
Length = 200
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + LAIY
Sbjct: 25 DIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGLAIY 84
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T C G AAS A +L+ G KG RY +PNAR M++QP G+ G D+
Sbjct: 85 DTMKFIKPDVTTTCMGQAASMGAFLLSAGAKGKRYCLPNARTMIHQPSGGAQGQATDIDI 144
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E +I R +++R+ A TGQPI+ +++ TERDRF++A ++ E+GL+D ++
Sbjct: 145 QAKEILIIRERLNRLMAEHTGQPIDVIERDTERDRFMNAEQSKEYGLVDEVV 196
>gi|268317954|ref|YP_003291673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
marinus DSM 4252]
gi|262335488|gb|ACY49285.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
marinus DSM 4252]
Length = 252
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RI+ IG PIN +A ++QL+ LA+ D + DI +Y+N PGGSI S LA+Y
Sbjct: 52 DIFSRLLKERIVIIGTPINDQIANLVVAQLLWLASEDSERDINIYINSPGGSIDSGLAVY 111
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP-QSGSGGHVEDVK 214
D M ++ P V T+C G+AAS A++LA G KG R A+PN+RIM++QP SG G D++
Sbjct: 112 DTMQYVAPPVATICVGLAASMGAVLLAAGVKGKRAALPNSRIMIHQPWMSGVQGQATDIE 171
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++ + A TGQP E++ Q +RD +LSA EA E+GL+D +L
Sbjct: 172 IHAREILKMRERLNEILAYHTGQPKERIAQDVDRDFWLSAQEAKEYGLVDNVL 224
>gi|400288463|ref|ZP_10790495.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter sp.
PAMC 21119]
Length = 215
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 116/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R R+IF+ + +A ++QL+ L + D DI +Y+N PGGS+ + LAI
Sbjct: 36 FDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAI 95
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M++IKP+V T+C G A S + +LA GEKG RYA+ NAR+M++QP G+ G D++
Sbjct: 96 FDTMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIE 155
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + +R +++++ A TGQP+EK+++ ERD +L A EA E+GL+D +LE
Sbjct: 156 INAREILKTRARLNKILAERTGQPVEKIEKDVERDYWLDAEEAKEYGLVDAVLE 209
>gi|158423232|ref|YP_001524524.1| ATP-dependent Clp protease proteolytic subunit [Azorhizobium
caulinodans ORS 571]
gi|172047856|sp|A8HYF2.1|CLPP_AZOC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|158330121|dbj|BAF87606.1| ATP-dependent Clp protease proteolytic subunit [Azorhizobium
caulinodans ORS 571]
Length = 210
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+ ++ A++QL+ L + +I MY+N PGG + S LAIY
Sbjct: 28 DIYSRLLKERIIFLTGPVEDGMSTLAVAQLLFLEAENPKKEISMYINSPGGVVTSGLAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G AAS +++L GEKG+R+A+PNARIM++QP G G V D+
Sbjct: 88 DTMQFIRPAVSTLCIGQAASMGSLLLTAGEKGLRFALPNARIMVHQPSGGFQGQVTDIML 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + + +++ +Y TGQPIEK++ ERD F++A A EFGLID +++
Sbjct: 148 HAQEILSLKKRLNEIYVKHTGQPIEKIEDALERDNFMTANAAQEFGLIDTVID 200
>gi|357132254|ref|XP_003567746.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 3,
chloroplastic-like [Brachypodium distachyon]
Length = 309
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 116/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD S++L R RIIF+G P++ M A ISQL+ L D+ DI +++N PGGSI + + I
Sbjct: 71 LDTSNMLLRQRIIFLGSPVDDMSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGI 130
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M + K + TVCFG+AAS A +LA G KG R+ MPNAR+M++QP G+GG ++
Sbjct: 131 YDAMKFCKSDISTVCFGLAASMGAFLLASGTKGKRFCMPNARVMIHQPSGGAGGKATEMG 190
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q+ E + + KI+++ + TG+P ++ + T+ D F+S EA ++G++D I++
Sbjct: 191 LQIREMLYEKIKINKIMSRITGKPEAQIDEDTKFDYFMSPWEAKDYGIVDSIID 244
>gi|33862948|ref|NP_894508.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9313]
gi|67460517|sp|Q7V7R2.1|CLPP3_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|33634865|emb|CAE20851.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9313]
Length = 197
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M +KP V TVC G+AAS A +L G G R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + +++R+ A TGQP+E++Q+ T+RD F+S AEA+
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNRVLADRTGQPLERIQEDTDRDFFMSPAEAVG 180
Query: 260 FGLIDGILE 268
+GL+D +++
Sbjct: 181 YGLVDSVID 189
>gi|418324661|ref|ZP_12935892.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus pettenkoferi VCU012]
gi|365225160|gb|EHM66411.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus pettenkoferi VCU012]
Length = 194
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDADKDIYLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG RYA+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICVGMAASMGSFLLAAGAKGKRYALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++++ A TGQ I+++++ T+RD FLSA EA ++GLID +++ E
Sbjct: 139 AANHILKTRAKLNKILAERTGQSIDQIEKDTDRDNFLSADEAKDYGLIDEVMQPE 193
>gi|427412668|ref|ZP_18902860.1| ATP-dependent Clp protease proteolytic subunit [Veillonella ratti
ACS-216-V-Col6b]
gi|425716475|gb|EKU79459.1| ATP-dependent Clp protease proteolytic subunit [Veillonella ratti
ACS-216-V-Col6b]
Length = 197
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PIN VA I+QL+ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIVFLGGPINDDVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG RYA+P+AR+M++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRYALPHARVMIHQPLGGVQGQASEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++ + A+ +GQPI+ + + T+RD F+SA +A+++GLID +L
Sbjct: 138 HAREILRMREELNGLLASHSGQPIDVIARDTDRDNFMSAEDAVKYGLIDEVL 189
>gi|363890989|ref|ZP_09318283.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium CM5]
gi|363893165|ref|ZP_09320304.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium CM2]
gi|363895295|ref|ZP_09322293.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium ACC19a]
gi|402838212|ref|ZP_10886724.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacteriaceae bacterium OBRC8]
gi|361957733|gb|EHL11038.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium ACC19a]
gi|361961689|gb|EHL14872.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium CM2]
gi|361962756|gb|EHL15865.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium CM5]
gi|402273716|gb|EJU22911.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacteriaceae bacterium OBRC8]
Length = 200
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGDEVNDQTASLVVAQLLFLESEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D+K
Sbjct: 79 DTIQYIKPDVSTICIGMAASMGAFLLNCGTKGKRFALPNSEIMIHQPLGGTRGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R ++++ A TGQPIE + + TERD F+SA EA ++GLID ++
Sbjct: 139 HAERIIKMRENLNQIMAERTGQPIEVINRDTERDFFMSAEEAKQYGLIDDVI 190
>gi|223947307|gb|ACN27737.1| unknown [Zea mays]
gi|413948196|gb|AFW80845.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 310
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 117/174 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G P++ A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 72 LDTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGV 131
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M + K V TVCFG+AAS A +LA G KG RY MPNARIM++QP G+GG V ++
Sbjct: 132 YDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARIMIHQPSGGAGGKVTEMG 191
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q+ E + + KI+++ + TG+ E++ + T+ D F+S +EA ++G++D I++
Sbjct: 192 LQIREMMYEKIKINKIMSRITGKSEEQIDEDTKFDYFMSPSEAKDYGIVDNIID 245
>gi|24373360|ref|NP_717403.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
oneidensis MR-1]
gi|60389791|sp|Q8EG19.1|CLPP_SHEON RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|24347620|gb|AAN54847.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
oneidensis MR-1]
Length = 202
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 115/173 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AI
Sbjct: 26 FDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAI 85
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 86 YDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIA 145
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + ++K+++M A TGQP+E +++ T+RD F+SA +A+E+GL+D ++
Sbjct: 146 IHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFMSATQAVEYGLVDAVM 198
>gi|345304234|ref|YP_004826136.1| ATP-dependent Clp protease proteolytic subunit [Rhodothermus
marinus SG0.5JP17-172]
gi|345113467|gb|AEN74299.1| ATP-dependent Clp protease proteolytic subunit [Rhodothermus
marinus SG0.5JP17-172]
Length = 250
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RI+ IG PIN +A ++QL+ LA+ D + DI +Y+N PGGSI S LA+Y
Sbjct: 52 DIFSRLLKERIVIIGTPINDQIANLVVAQLLWLASEDSERDINIYINSPGGSIDSGLAVY 111
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP-QSGSGGHVEDVK 214
D M ++ P V T+C G+AAS A++LA G KG R A+PN+RIM++QP SG G D++
Sbjct: 112 DTMQYVAPPVATICVGLAASMGAVLLAAGVKGKRAALPNSRIMIHQPWMSGVQGQATDIE 171
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++ + A TGQP E++ Q +RD +LSA EA E+GL+D +L
Sbjct: 172 IHAREILKMRERLNEILAYHTGQPKERIAQDVDRDFWLSAQEAKEYGLVDNVL 224
>gi|427730195|ref|YP_007076432.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc sp.
PCC 7524]
gi|427366114|gb|AFY48835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc sp.
PCC 7524]
Length = 232
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 88
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTPGKRMSLPDSRIMI 148
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++++ A TGQP+E+++ T+RD F+SA EA
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLAKHTGQPLERIETDTDRDFFMSAEEAKS 208
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 209 YGLIDQVI 216
>gi|225019943|ref|ZP_03709135.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum
DSM 5476]
gi|224947307|gb|EEG28516.1| hypothetical protein CLOSTMETH_03897 [Clostridium methylpentosum
DSM 5476]
Length = 188
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L +RII + +N A ++QL+ L D + DI +Y+N PGGSI S +AIY
Sbjct: 14 DIYSRLLNDRIIMLSDEVNDATASLVVAQLLYLEAQDPEKDIQLYINSPGGSITSGMAIY 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +L+ G KG R A+PN+ IM++QP G+ G D+
Sbjct: 74 DTMNYIKSDVSTICIGMAASMGAFLLSAGAKGKRLALPNSEIMIHQPSGGAQGQATDINI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q + + ++++M A TGQP+EK+++ TERD F+SA EA E+GL+D ++E
Sbjct: 134 QAERIIKMKKQLNQMLADATGQPLEKIERDTERDNFMSAQEACEYGLVDKVIE 186
>gi|386723275|ref|YP_006189601.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus K02]
gi|384090400|gb|AFH61836.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus K02]
Length = 200
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 114/174 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+QL+ L+ D D DI +Y+N PGGS + L I
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDTVANSIIAQLLLLSAEDPDKDIHLYINSPGGSTTAGLGIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA++L G G R+A+P+A +M++QP GS G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMAAVLLVAGAPGKRFALPHAEVMIHQPHGGSQGQASDIHI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
V +R ++R+ A +GQP EK+++ T+RD F++A A+E+G+ID +L +
Sbjct: 139 HAQRIVQTRELLNRIIAERSGQPFEKIERDTDRDYFMTAPAALEYGIIDKVLHS 192
>gi|374709641|ref|ZP_09714075.1| ATP-dependent Clp protease proteolytic subunit [Sporolactobacillus
inulinus CASD]
Length = 194
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 120/191 (62%), Gaps = 4/191 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ D+ S L ++RII +G I+ VA ++QL+ LA D + DI
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANAVVAQLLFLAAEDSEKDIS 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGSI + +AI+D M +IKPKV T+C G+AAS + +L GE G RYA+PN+ IM
Sbjct: 62 IYINSPGGSITAGMAIFDTMQYIKPKVSTICIGMAASMGSFLLTAGEIGKRYALPNSEIM 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G G D++ + R K++ +YA TGQP + + + T+RD F+SA +A
Sbjct: 122 IHQPLGGMQGQAADMEIHAKRIISIREKLNHIYAERTGQPYDVIARDTDRDNFMSAEDAK 181
Query: 259 EFGLIDGILET 269
++GLID IL T
Sbjct: 182 KYGLIDEILTT 192
>gi|352093978|ref|ZP_08955149.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8016]
gi|351680318|gb|EHA63450.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8016]
Length = 209
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ S A R ++QL+ L D + +I +
Sbjct: 14 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKEIFL 73
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 74 YVNSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 133
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + +++ + TGQP++K+Q T+RD F+S +AME
Sbjct: 134 HQPLGGASGQASDIRIQADEILFLKDRLNHELSDRTGQPLDKIQADTDRDFFMSPQQAME 193
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 194 YGLIDNVID 202
>gi|33864600|ref|NP_896159.1| ATP-dependent Clp protease proteolytic subunit 2 [Synechococcus sp.
WH 8102]
gi|67460511|sp|Q7UA36.1|CLPP1_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|33632123|emb|CAE06579.1| ATP-dependent Clp protease proteolytic subunit 2 [Synechococcus sp.
WH 8102]
Length = 224
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 23 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 82
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 83 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARI 142
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP++K+ + T+RD FLS AEA
Sbjct: 143 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMADHTGQPLDKIAEDTDRDYFLSPAEA 202
Query: 258 MEFGLIDGILET 269
+++GLID ++++
Sbjct: 203 VQYGLIDRVVDS 214
>gi|399924495|ref|ZP_10781853.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
rhinitidis 1-13]
Length = 194
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 118/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF +N +A ++QL+ L + D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIFASGEVNDAMADLIVAQLLFLESEDPNKDIQLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMNYIKPDVSTICIGMAASMGAFLLASGAKGKRFALPNSDIMIHQPSGGAQGQASDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + RHK++ + + TGQP+EK+++ T+RD +LS+ EA ++GLID ++E
Sbjct: 139 NAEKILKIRHKLNEILSDRTGQPLEKIERDTDRDYWLSSEEAKKYGLIDKVIE 191
>gi|307151649|ref|YP_003887033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7822]
gi|306981877|gb|ADN13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7822]
Length = 228
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G I+ VA ++QL+ L D + DI +
Sbjct: 26 IVPVVIEQSGMGERAFDIYSRLLRERIVFLGTAIDDNVADSIVAQLLYLDAEDPEKDIQL 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L+GG KG R A+P+ARIM+
Sbjct: 86 YINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSARIMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G ++ Q E + + +++ + A TGQP E++ + TERD ++S +A +
Sbjct: 146 HQPIGGAQGQAVEIDIQAKEILYIKQRLNSLLAEHTGQPYERIAEDTERDFYMSVHDAKD 205
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 206 YGLIDQVI 213
>gi|304407481|ref|ZP_07389133.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
gi|304343432|gb|EFM09274.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
Length = 193
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+QL+ LA D + DI +Y+N PGGS+ + + I+
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDDVANSIIAQLLFLAADDPEKDIHLYINSPGGSVTAGMGIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS +++L G KG R+++PN+ +M++QP G G D+K
Sbjct: 79 DTMQFIKPDVSTICVGMAASMGSLLLTAGAKGKRFSLPNSEVMIHQPLGGVRGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ K++++Y TGQP EK+++ T+RD FLSA EA+ +GLID ++
Sbjct: 139 HADWIIKTKQKLNQIYVERTGQPYEKIERDTDRDNFLSAEEAVAYGLIDKVV 190
>gi|397643686|gb|EJK76020.1| hypothetical protein THAOC_02238 [Thalassiosira oceanica]
Length = 221
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 123/187 (65%)
Query: 84 LMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC 143
L+P V + G LD+ S L ++RI+ +G +N +A ++QL+ LA D + DI +Y+N
Sbjct: 21 LVPTVGSDSGQLDVVSRLLKDRILLLGTDVNDEMANVLVAQLLYLANEDPEKDITIYINS 80
Query: 144 PGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 203
PGGS+ + LAIYD M +I V TVCFG+AAS A +L G G R ++PNARIM++QP
Sbjct: 81 PGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQPL 140
Query: 204 SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLI 263
G+ G D++ Q E + + +++ A + QP+EK+++ T+RD F++ EAM++G+I
Sbjct: 141 GGAQGQAADIEIQAKEILFVKACLNKYIAQYCDQPVEKIEEDTDRDFFMTPTEAMDYGII 200
Query: 264 DGILETE 270
D +++T+
Sbjct: 201 DEVIKTK 207
>gi|326509601|dbj|BAJ87016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 296
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 121/182 (66%), Gaps = 2/182 (1%)
Query: 91 PGGPL--DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI 148
PGG D+ +L R RIIF+G I +A +SQL+ L +D ++DI +++N PGGS+
Sbjct: 76 PGGVASGDVMGLLLRERIIFLGNEIEDFLADAVVSQLLLLDAMDSESDIRLFVNSPGGSL 135
Query: 149 YSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG 208
+ +AIYD M ++ V T+ G+A S A+I+L GG KG R+AMPN RIM++QP G+ G
Sbjct: 136 SATMAIYDVMQLVRADVSTIGMGIAGSTASILLGGGAKGKRFAMPNTRIMMHQPVGGASG 195
Query: 209 HVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
DV+ Q E + S+ + R+ + FTG+ +E+V++ +RDR++ EA+++G+IDG+++
Sbjct: 196 QALDVEVQAKEILASKRNVIRLISGFTGRTLEQVEKDIDRDRYMGPLEAVDYGIIDGVID 255
Query: 269 TE 270
+
Sbjct: 256 ED 257
>gi|307730796|ref|YP_003908020.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1003]
gi|307585331|gb|ADN58729.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1003]
Length = 219
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 69 EHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQ 124
+ SY ++G L+P V+ G D+ S L R RI+F+ P+N A ++Q
Sbjct: 2 QFSYPPVTGLG----LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQ 57
Query: 125 LVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGG 184
L+ L + + D DI Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G
Sbjct: 58 LLFLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAG 117
Query: 185 EKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQ 244
+ G RYA+PNARIM++QP G G D+ Q E + R +++ M A TG+ +E++ +
Sbjct: 118 QPGKRYALPNARIMIHQPSGGGQGTAADIDIQAKEVLYLRERLNTMMAERTGRGVEEIAR 177
Query: 245 YTERDRFLSAAEAMEFGLIDGILET 269
T+RD F+SA A +GL+D +LET
Sbjct: 178 DTDRDNFMSAFAAKAYGLVDEVLET 202
>gi|337746797|ref|YP_004640959.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
mucilaginosus KNP414]
gi|379720679|ref|YP_005312810.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus 3016]
gi|336297986|gb|AEI41089.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus KNP414]
gi|378569351|gb|AFC29661.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus 3016]
Length = 200
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 114/174 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+QL+ L+ D D DI +Y+N PGGS + L I
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDTVANSIIAQLLLLSAEDPDKDIHLYINSPGGSTTAGLGIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA++L G G R+A+P+A +M++QP GS G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMAAVLLVSGAPGKRFALPHAEVMIHQPHGGSQGQASDIHI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
V +R ++R+ A +GQP EK+++ T+RD F++A A+E+G+ID +L +
Sbjct: 139 HAQRIVQTRELLNRIIAERSGQPFEKIERDTDRDYFMTAPAALEYGIIDKVLHS 192
>gi|118444381|ref|YP_878863.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi
NT]
gi|166201817|sp|A0Q2L1.1|CLPP_CLONN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|118134837|gb|ABK61881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
novyi NT]
Length = 195
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
N + + K++ + + TGQP+E +++ ERD F+ A EA E+GLID ++
Sbjct: 139 HANRILKIKDKLNSILSERTGQPLEVIKKDVERDNFMEAEEAKEYGLIDDVI 190
>gi|445498475|ref|ZP_21465330.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
gi|444788470|gb|ELX10018.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
Length = 204
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + R+IF+ + A ++QL+ L + D DI +Y+N PGGS+Y+ +A+
Sbjct: 26 FDIYSRLLKERVIFLVGEVTEQSANLIVAQLLFLESDDPGKDISLYINSPGGSVYAGMAV 85
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V T+C G AAS + +LA G G RYA+PNARIM++QP GS G D++
Sbjct: 86 YDTMQFIKPDVSTLCTGFAASMGSFLLAAGAIGKRYALPNARIMMHQPHGGSQGVAADIE 145
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + RH+++ +YA TGQP+ ++++ ++RD ++SA + E+GLID +L
Sbjct: 146 IQAREVLYQRHRLNTIYAERTGQPLARIEKDSDRDNYMSAQQGAEYGLIDRVL 198
>gi|340787626|ref|YP_004753091.1| ATP-dependent Clp protease proteolytic subunit [Collimonas
fungivorans Ter331]
gi|340552893|gb|AEK62268.1| ATP-dependent Clp protease proteolytic subunit [Collimonas
fungivorans Ter331]
Length = 208
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 118/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RIIF+ P+N A ++QL+ L + + D DI +Y+N PGGS+ + +AIY
Sbjct: 33 DIYSRLLRERIIFLVGPVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIY 92
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP++ T+C G+AAS A +LA G KG R+++PN+RIM++QP G+ G D++
Sbjct: 93 DTMQFVKPEISTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEI 152
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ + A TG+ IE++ + T+RD F+SA A+E+GLID +L T
Sbjct: 153 QAREILYLRERLNGILADKTGRSIEQISKDTDRDNFMSADAAVEYGLIDKVLAT 206
>gi|374307960|ref|YP_005054391.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Filifactor
alocis ATCC 35896]
gi|374308266|ref|YP_005054697.1| hypothetical protein [Filifactor alocis ATCC 35896]
gi|320120411|gb|EFE27574.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Filifactor
alocis ATCC 35896]
gi|320120478|gb|ADW16163.1| hypothetical protein HMPREF0389_01718 [Filifactor alocis ATCC
35896]
Length = 196
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 119/188 (63%), Gaps = 4/188 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L ++RIIF+ +N + + ++Q++ L D D DI+ Y
Sbjct: 6 VPVVVEQSGRGERSYDIYSRLLKDRIIFLSDEVNDVTSSLVVAQMLFLEAEDPDKDIMFY 65
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGSI S +AI+D M +IK V T+C G+AAS A +LA GEKG RYA+PNA +M++
Sbjct: 66 INSPGGSITSGMAIFDTMQYIKCDVCTICIGMAASMGAFLLAAGEKGKRYALPNAEVMIH 125
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G D++ Q + + K++ + A TGQ +E ++ TERD F+SA EA E+
Sbjct: 126 QPLGGAQGQATDIQIQAERILKMKDKLNIILAERTGQNLETIKNDTERDNFMSAEEAKEY 185
Query: 261 GLIDGILE 268
GLID ++E
Sbjct: 186 GLIDKVIE 193
>gi|452820068|gb|EME27116.1| ATP-dependent Clp protease, protease subunit [Galdieria
sulphuraria]
Length = 293
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 123/189 (65%)
Query: 82 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 141
P +P V +D+ S L ++RI+ +G+ ++ VA ++Q++ LA D DI +Y+
Sbjct: 93 PAPIPTVYMGDTQMDIYSRLAKDRILLLGRAVDDEVANALVAQMLFLANEDPSKDITLYI 152
Query: 142 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 201
N PGGS+ + LA+YD M +I V TVCFG AAS AA +L G KG R ++PNARIM++Q
Sbjct: 153 NSPGGSVSAGLAVYDTMQFIPCDVSTVCFGTAASMAAFLLGAGTKGKRKSLPNARIMIHQ 212
Query: 202 PQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFG 261
P G+ G D++ Q E + + ++ A +TG+P+EK++Q T+RD F++ EA+E+G
Sbjct: 213 PLGGAQGQAADIEIQAREILFIKSLLNTYMADYTGKPLEKIEQDTDRDFFMTPEEALEYG 272
Query: 262 LIDGILETE 270
+ID +++T+
Sbjct: 273 MIDEVIQTK 281
>gi|15895898|ref|NP_349247.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum ATCC 824]
gi|337737851|ref|YP_004637298.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum DSM 1731]
gi|384459361|ref|YP_005671781.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum EA 2018]
gi|18202304|sp|P58276.1|CLPP_CLOAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|15025667|gb|AAK80587.1|AE007761_6 Protease subunits of ATP-dependent protease, ClpP [Clostridium
acetobutylicum ATCC 824]
gi|325510050|gb|ADZ21686.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum EA 2018]
gi|336292077|gb|AEI33211.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum DSM 1731]
Length = 193
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++R+IF+G+ +N A ++QL+ L + D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRVIFLGEEVNDTTASLVVAQLLFLESEDPDKDIYLYINSPGGSITSGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS + +L G G R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYVKPDVSTICIGMAASMGSFLLTAGAPGKRFALPNSEIMIHQPLGGFKGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + K++ +Y+ TG+PIE +++ T+RD FLSA EA E+GLID ++
Sbjct: 139 HAQRILEIKKKLNSIYSERTGKPIEVIEKDTDRDHFLSAEEAKEYGLIDEVI 190
>gi|357974124|ref|ZP_09138095.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas sp.
KC8]
Length = 224
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 114/174 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+ + +A +QL+ L + + DI MY+N PGG + + LAI
Sbjct: 39 FDIYSRLLRERIIFVTGAVEDHMASIITAQLLFLESENPKKDIFMYINSPGGVVTAGLAI 98
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P+VGTVC G AAS + +LA GE GMR A+ N+RIM++QP G+ G D++
Sbjct: 99 HDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRMALTNSRIMIHQPSGGAQGMASDIE 158
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R++++ +YA +TG+PIE ++ +RD+FL A EA EFGLID + +
Sbjct: 159 IQAKEILRMRNRLNSLYAKYTGKPIEVIEAAMDRDKFLEADEAKEFGLIDEVFD 212
>gi|406935006|gb|EKD69100.1| ATP-dependent Clp protease proteolytic subunit [uncultured
bacterium]
Length = 200
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+FIG I A I+Q++ L D D DI +Y+N PGG + S LAIY
Sbjct: 18 DIYSRLLKDRIVFIGSDIEDYSANLIIAQMLFLEAEDPDKDINVYINSPGGVVTSGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ I+P + T+C G AAS A++LA G KG R A+ NAR+M++QP G+ G D++
Sbjct: 78 DTMNVIRPAISTICCGQAASMGAVLLAAGTKGKRLALTNARVMIHQPLGGAHGQATDIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + K++++ A TGQP E + + TERD F+SAA A+E+GLID ILE
Sbjct: 138 QAKEILGIKEKLNKILANHTGQPYETICRDTERDNFMSAARALEYGLIDRILE 190
>gi|186475776|ref|YP_001857246.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
phymatum STM815]
gi|390571699|ref|ZP_10251936.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia terrae
BS001]
gi|420250357|ref|ZP_14753576.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. BT03]
gi|184192235|gb|ACC70200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phymatum STM815]
gi|389936313|gb|EIM98204.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia terrae
BS001]
gi|398061216|gb|EJL53014.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. BT03]
Length = 219
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ +N A I+QL+ L + + D DI
Sbjct: 28 LVPIVVETSGRGERSYDIYSRLLKERVVFLVGEVNDQTANLVIAQLLFLESENPDKDISF 87
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PNAR+M+
Sbjct: 88 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNARVMI 147
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++++ + TGQP+E++Q+ T+RD F+S +A
Sbjct: 148 HQPLGGARGQASDIEIQAREILYLKERLNQLLSHHTGQPVERIQRDTDRDNFMSGDDAQA 207
Query: 260 FGLIDGILE 268
+GL+D +L
Sbjct: 208 YGLVDQVLH 216
>gi|170078453|ref|YP_001735091.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7002]
gi|169886122|gb|ACA99835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7002]
Length = 198
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G +N +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIESSGRGERAFDIYSRLLRERIVFLGTQVNDEIANLIVAQLLFLEADDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ ++P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGMGIFDTMNQVRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K+++ A TGQP+EK++ T+RD F+SAAEA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGKLNQHLADHTGQPLEKIEIDTDRDFFMSAAEAKD 180
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 181 YGLIDQVIE 189
>gi|375106291|ref|ZP_09752552.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Burkholderiales bacterium JOSHI_001]
gi|374667022|gb|EHR71807.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Burkholderiales bacterium JOSHI_001]
Length = 202
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 118/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RIIF+ P+N A ++QL+ L + + D +I +Y+N PGGS+ + ++I+
Sbjct: 27 DIYSRLLRERIIFLVGPVNDATANLVVAQLLFLESENPDKEISLYINSPGGSVSAGMSIF 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS + +L G KG R+A+PN++IM++QP G+ G D++
Sbjct: 87 DTMQFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALPNSKIMIHQPSGGAQGQATDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + +R +++++YA TGQ +EK+Q ERD +++ EA+E+GLID +LE
Sbjct: 147 HAREILKTREQLNKIYAERTGQTLEKIQADMERDFYMNPVEALEYGLIDKVLE 199
>gi|221068424|ref|ZP_03544529.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Comamonas
testosteroni KF-1]
gi|220713447|gb|EED68815.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Comamonas
testosteroni KF-1]
Length = 202
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI
Sbjct: 11 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDISF 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AI+D M++IKP V T+C G+AAS A +L+ G KG RYA+PNA++M+
Sbjct: 71 YINSPGGSVTAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLSAGAKGKRYALPNAQVMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ E + +R +++++ A TGQP+EK+Q TERD FLSA EA +
Sbjct: 131 HQPLGGARGQATEIEIHAREILKTRERLNKILAERTGQPLEKIQNDTERDYFLSADEAKD 190
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 191 YGLVDQVI 198
>gi|291518668|emb|CBK73889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
fibrisolvens 16/4]
Length = 194
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ +N A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIVFLGEEVNETTASLTVAQLLFLESEDPSKDIHLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +LAGG+KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTICIGMAASMGAFLLAGGQKGKRFALPNAEVMIHQPLGGAKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++RM AA TG+ E+V TERD +L A EA+++GLID I+
Sbjct: 139 AAKNILKTREKLNRMLAANTGKDYEQVCLDTERDHWLDAQEALDYGLIDEII 190
>gi|54309798|ref|YP_130818.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
profundum SS9]
gi|46914236|emb|CAG21016.1| putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease,
proteolytic subunit [Vibrio vulnificus CMCP6]
[Photobacterium profundum SS9]
Length = 207
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG KG RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +H+++ + A TGQP+E V+ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAKEILTIKHRLNSLLAKHTGQPLEVVEGDTDRDNFMSADQAVEYGLVDSVL 203
>gi|427733872|ref|YP_007053416.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rivularia sp.
PCC 7116]
gi|427368913|gb|AFY52869.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rivularia sp.
PCC 7116]
Length = 201
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RIIF+GQPI+S VA ++Q++ L D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRDRIIFLGQPIDSNVANLIVAQMLLLDAEDAEKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P + T+C G+AAS A +L G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMRHIRPDICTICTGLAASMGAFLLTAGTKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++++ A TGQPIE++ + TERD F+S ++A +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKQQLNQYLAENTGQPIERIAEDTERDFFMSPSDAKD 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|17546430|ref|NP_519832.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum GMI1000]
gi|83745913|ref|ZP_00942970.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum UW551]
gi|207743049|ref|YP_002259441.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum IPO1609]
gi|300691404|ref|YP_003752399.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum PSI07]
gi|300703972|ref|YP_003745574.1| proteolytic subunit of clpa-clpp ATP-dependent serine protease
[Ralstonia solanacearum CFBP2957]
gi|386333413|ref|YP_006029583.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum Po82]
gi|421888083|ref|ZP_16319197.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum K60-1]
gi|421898197|ref|ZP_16328564.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum MolK2]
gi|22653696|sp|Q8XYP7.1|CLPP_RALSO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|17428728|emb|CAD15413.1| probable atp-atp-dependent clp protease proteolytic subunit
(endopeptidase clp). transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|83727603|gb|EAP74724.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum UW551]
gi|206589403|emb|CAQ36365.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum MolK2]
gi|206594446|emb|CAQ61373.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum IPO1609]
gi|299066731|emb|CBJ37925.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum CMR15]
gi|299071635|emb|CBJ42959.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum CFBP2957]
gi|299078464|emb|CBJ51116.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum PSI07]
gi|334195862|gb|AEG69047.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum Po82]
gi|344167643|emb|CCA79883.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[blood disease bacterium R229]
gi|344174667|emb|CCA86475.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia syzygii R24]
gi|378966546|emb|CCF95945.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum K60-1]
Length = 217
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LA+YD M ++KP V T+C G+AAS A +LA G KG RYA+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + + TGQP++K+ + T+RD F+S +A E
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKE 204
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 205 YGLIDKVL 212
>gi|168013186|ref|XP_001759282.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689595|gb|EDQ75966.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 205
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 113/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L + RI+F+G ++ A ISQL+ L D DI +++N PGGS+ + + I
Sbjct: 4 LDPATMLLQQRILFLGSQVDDFSADVIISQLLLLDAQDPTKDIKLFINSPGGSVTAGMGI 63
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVCFG+AAS A +LA G KG RY MPNAR+M++QP G+GG D
Sbjct: 64 YDAMKLCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARVMIHQPLGGAGGTAIDGA 123
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
QV E + ++K+ ++ + TGQP KV+ T+RD F++A EA E+GL+DG++
Sbjct: 124 LQVREMMYHKYKLQKIMSRLTGQPEAKVEADTDRDNFMNAWEAKEYGLVDGVI 176
>gi|153814157|ref|ZP_01966825.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756]
gi|317499957|ref|ZP_07958193.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331087820|ref|ZP_08336745.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336438243|ref|ZP_08617883.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145848553|gb|EDK25471.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Ruminococcus torques ATCC 27756]
gi|316898674|gb|EFV20709.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330409515|gb|EGG88956.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336014049|gb|EGN43912.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 193
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V TVC G+AAS A +LAGG+KG R+A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLAGGKKGKRFALPNAEIMIHQPSGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ ++ K++ + AA TGQ +E ++ TERD F+SA EA +GLID ++
Sbjct: 139 AAEHILRTKQKLNEILAANTGQSLETIKADTERDNFMSADEAKAYGLIDEVI 190
>gi|403669499|ref|ZP_10934703.1| ATP-dependent Clp protease proteolytic subunit [Kurthia sp. JC8E]
Length = 196
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANAIVSQLLFLEAEDPEKDIYLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS + +L G KG RYA+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVQTICIGMAASMGSFLLTAGTKGKRYALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++R+ A TGQPIE +++ T+RD ++SA +A+E+G+ID I+
Sbjct: 139 AARHILKTREKLNRILAERTGQPIEVIEKDTDRDNYMSAEQALEYGIIDKIM 190
>gi|168043511|ref|XP_001774228.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674496|gb|EDQ61004.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 243
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 11/188 (5%)
Query: 91 PGGP-----------LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
PGGP LD ++L + RI+F+G ++ A ISQ++ L D DI +
Sbjct: 4 PGGPGGIEQFARLQDLDPGTMLLQQRILFLGSQVDDFSADLIISQMLLLDAQDPTRDIKL 63
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
++N PGGS+ + + IYD M K V TVCFG+AAS A +L G KG RY MPNAR+M+
Sbjct: 64 FINSPGGSVTAGMGIYDAMKLCKADVSTVCFGLAASMGAFLLTAGTKGKRYCMPNARVMI 123
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+GG D QV E + ++K+ ++ + TGQP +V+ T+RD F++A EAME
Sbjct: 124 HQPLGGAGGTAIDGALQVREMMFHKYKLQKIMSRLTGQPEARVEADTDRDNFMNAWEAME 183
Query: 260 FGLIDGIL 267
+GL+DG++
Sbjct: 184 YGLVDGVI 191
>gi|444912991|ref|ZP_21233148.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
gi|444716404|gb|ELW57255.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
Length = 205
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 114/171 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ +G I+ VA +SQL+ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 21 DIYSRLLKDRIVMLGTEIDDDVANVIVSQLLFLESEDPDKDINLYINSPGGSVTAGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G AAS A++L G KG RYA+P++RIM++QP G G D++
Sbjct: 81 DTMQYVKPNVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGI 266
Q E + R K++ + TGQPIE+V++ T+RD F+ AAEA +G++D +
Sbjct: 141 QAKEILRMRAKLNELIVKHTGQPIERVEKDTDRDYFMGAAEAKAYGILDEV 191
>gi|424777542|ref|ZP_18204505.1| ATP-dependent Clp protease proteolytic subunit [Alcaligenes sp.
HPC1271]
gi|422887494|gb|EKU29897.1| ATP-dependent Clp protease proteolytic subunit [Alcaligenes sp.
HPC1271]
Length = 195
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RIIF+ P++ A ++QL+ L + + + DI +Y+N PGGS+Y+ LAIY
Sbjct: 19 DIYSRLLRERIIFLVGPVHDNSANLIVAQLLFLESENPEKDISLYINSPGGSVYAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G+AAS A +L+ G KG R A+PN+RIM++QP G+ G D++
Sbjct: 79 DTMQFVKPEVSTLCTGMAASMGAFLLSSGVKGKRLALPNSRIMIHQPSGGARGQASDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++++ A GQP+E+++ TERD F++A +A+ +GLID ++ T
Sbjct: 139 QAKEILSLRERLNKILAENCGQPVERIELDTERDNFMAAEDAVAYGLIDKVMNT 192
>gi|257784419|ref|YP_003179636.1| endopeptidase Clp [Atopobium parvulum DSM 20469]
gi|257472926|gb|ACV51045.1| Endopeptidase Clp [Atopobium parvulum DSM 20469]
Length = 202
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 123/193 (63%), Gaps = 4/193 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N P +P V+ TP G D+ S L +RI+F+G+P+ A I+QL+ L + D D D
Sbjct: 6 NIPTIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEPVTRDSANLVIAQLLHLESQDPDKD 65
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y++ PGG +Y+ L I D M++IKP V T+C G+AAS +A++LA G KG R A+PN+
Sbjct: 66 ISLYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMSAVLLAAGAKGKRLALPNSM 125
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
+M++QP SG G D++ +E R I+ + + +TGQ IEKV TERD +L A E
Sbjct: 126 VMIHQPSSGVQGQQTDIQIVADETKWIREHINELLSDYTGQSIEKVNVDTERDNYLRAQE 185
Query: 257 AMEFGLIDGILET 269
A ++GL+D ++ +
Sbjct: 186 ACDYGLVDRVISS 198
>gi|418911445|ref|ZP_13465428.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG547]
gi|377724823|gb|EHT48938.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Staphylococcus aureus subsp. aureus CIG547]
Length = 195
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
N + +R K++ + + TGQ IEK+Q+ T+RD FL+A EA E+GLID ++
Sbjct: 139 AANHILKTREKLNHILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190
>gi|121727845|ref|ZP_01680912.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae V52]
gi|229507982|ref|ZP_04397487.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
330286]
gi|229511781|ref|ZP_04401260.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
B33]
gi|229515308|ref|ZP_04404768.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
21]
gi|229518918|ref|ZP_04408361.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
RC9]
gi|229523942|ref|ZP_04413347.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
albensis VL426]
gi|229529052|ref|ZP_04418442.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
12129(1)]
gi|229607528|ref|YP_002878176.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
MJ-1236]
gi|254849010|ref|ZP_05238360.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
gi|255745319|ref|ZP_05419268.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
101]
gi|262156043|ref|ZP_06029163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
INDRE 91/1]
gi|262167884|ref|ZP_06035584.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
RC27]
gi|297579440|ref|ZP_06941368.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
gi|298498040|ref|ZP_07007847.1| clp protease [Vibrio cholerae MAK 757]
gi|360035805|ref|YP_004937568.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
str. 2010EL-1786]
gi|379741755|ref|YP_005333724.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
IEC224]
gi|384424912|ref|YP_005634270.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
LMA3984-4]
gi|417813967|ref|ZP_12460620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-49A2]
gi|417817704|ref|ZP_12464333.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HCUF01]
gi|417821275|ref|ZP_12467889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE39]
gi|417825143|ref|ZP_12471731.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE48]
gi|418334942|ref|ZP_12943856.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-06A1]
gi|418338559|ref|ZP_12947453.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-23A1]
gi|418346477|ref|ZP_12951239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-28A1]
gi|418350239|ref|ZP_12954970.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-43A1]
gi|418355975|ref|ZP_12958694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-61A1]
gi|419826901|ref|ZP_14350400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1033(6)]
gi|419830397|ref|ZP_14353882.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-1A2]
gi|419834076|ref|ZP_14357531.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-61A2]
gi|419837652|ref|ZP_14361090.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-46B1]
gi|421318223|ref|ZP_15768791.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1032(5)]
gi|421321694|ref|ZP_15772247.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1038(11)]
gi|421325493|ref|ZP_15776017.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1041(14)]
gi|421329155|ref|ZP_15779665.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1042(15)]
gi|421333063|ref|ZP_15783540.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1046(19)]
gi|421336651|ref|ZP_15787112.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1048(21)]
gi|421340082|ref|ZP_15790514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-20A2]
gi|421344701|ref|ZP_15795104.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-43B1]
gi|421348140|ref|ZP_15798517.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-46A1]
gi|421351663|ref|ZP_15802028.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-25]
gi|421354596|ref|ZP_15804928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-45]
gi|422897029|ref|ZP_16934479.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-40A1]
gi|422903231|ref|ZP_16938207.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-48A1]
gi|422907115|ref|ZP_16941919.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-70A1]
gi|422909692|ref|ZP_16944335.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-09]
gi|422913962|ref|ZP_16948468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HFU-02]
gi|422917778|ref|ZP_16952096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-02A1]
gi|422923227|ref|ZP_16956385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae BJG-01]
gi|422926168|ref|ZP_16959182.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-38A1]
gi|423145487|ref|ZP_17133081.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-19A1]
gi|423150163|ref|ZP_17137477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-21A1]
gi|423153983|ref|ZP_17141164.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-22A1]
gi|423157067|ref|ZP_17144160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-32A1]
gi|423160637|ref|ZP_17147577.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-33A2]
gi|423165457|ref|ZP_17152186.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-48B2]
gi|423731474|ref|ZP_17704777.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-17A1]
gi|423735604|ref|ZP_17708801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-41B1]
gi|423768488|ref|ZP_17712902.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-50A2]
gi|423822683|ref|ZP_17716693.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55C2]
gi|423856424|ref|ZP_17720500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-59A1]
gi|423882950|ref|ZP_17724087.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-60A1]
gi|423895365|ref|ZP_17727112.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-62A1]
gi|423930803|ref|ZP_17731506.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-77A1]
gi|423956436|ref|ZP_17734990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-40]
gi|423985222|ref|ZP_17738539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-46]
gi|423998208|ref|ZP_17741460.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-02C1]
gi|424002918|ref|ZP_17745993.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-17A2]
gi|424006707|ref|ZP_17749677.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-37A1]
gi|424009944|ref|ZP_17752881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-44C1]
gi|424017101|ref|ZP_17756930.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55B2]
gi|424020026|ref|ZP_17759812.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-59B1]
gi|424024688|ref|ZP_17764339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-62B1]
gi|424027573|ref|ZP_17767176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-69A1]
gi|424586845|ref|ZP_18026424.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1030(3)]
gi|424595492|ref|ZP_18034813.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1040(13)]
gi|424599408|ref|ZP_18038589.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
Cholerae CP1044(17)]
gi|424602129|ref|ZP_18041271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1047(20)]
gi|424607100|ref|ZP_18046044.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1050(23)]
gi|424610923|ref|ZP_18049762.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-39A1]
gi|424613736|ref|ZP_18052524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-41A1]
gi|424617716|ref|ZP_18056388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-42A1]
gi|424622495|ref|ZP_18061003.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-47A1]
gi|424625394|ref|ZP_18063855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-50A1]
gi|424629880|ref|ZP_18068167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-51A1]
gi|424633923|ref|ZP_18072023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-52A1]
gi|424637005|ref|ZP_18075013.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55A1]
gi|424640914|ref|ZP_18078797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-56A1]
gi|424645459|ref|ZP_18083195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-56A2]
gi|424648982|ref|ZP_18086645.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-57A1]
gi|424653228|ref|ZP_18090608.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-57A2]
gi|424659631|ref|ZP_18096880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-16]
gi|429887950|ref|ZP_19369454.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
PS15]
gi|440710125|ref|ZP_20890776.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
4260B]
gi|443504285|ref|ZP_21071243.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-64A1]
gi|443508183|ref|ZP_21074946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-65A1]
gi|443512025|ref|ZP_21078663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-67A1]
gi|443515583|ref|ZP_21082094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-68A1]
gi|443519377|ref|ZP_21085773.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-71A1]
gi|443524267|ref|ZP_21090480.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-72A2]
gi|443527901|ref|ZP_21093950.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-78A1]
gi|443531864|ref|ZP_21097878.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-7A1]
gi|443535661|ref|ZP_21101539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-80A1]
gi|443539208|ref|ZP_21105062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-81A1]
gi|449055648|ref|ZP_21734316.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
str. Inaba G4222]
gi|121629881|gb|EAX62295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae V52]
gi|229332826|gb|EEN98312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
12129(1)]
gi|229337523|gb|EEO02540.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
albensis VL426]
gi|229343607|gb|EEO08582.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
RC9]
gi|229348013|gb|EEO12972.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
21]
gi|229351746|gb|EEO16687.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
B33]
gi|229355487|gb|EEO20408.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
330286]
gi|229370183|gb|ACQ60606.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
MJ-1236]
gi|254844715|gb|EET23129.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
gi|255737149|gb|EET92545.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
101]
gi|262023611|gb|EEY42312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
RC27]
gi|262030221|gb|EEY48865.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
INDRE 91/1]
gi|297537034|gb|EFH75867.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
gi|297542373|gb|EFH78423.1| clp protease [Vibrio cholerae MAK 757]
gi|327484465|gb|AEA78872.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
LMA3984-4]
gi|340036453|gb|EGQ97429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-49A2]
gi|340037427|gb|EGQ98402.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HCUF01]
gi|340038906|gb|EGQ99880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE39]
gi|340046628|gb|EGR07558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE48]
gi|341621322|gb|EGS47068.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-70A1]
gi|341621465|gb|EGS47210.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-48A1]
gi|341622390|gb|EGS48053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-40A1]
gi|341634452|gb|EGS59210.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-09]
gi|341636660|gb|EGS61354.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-02A1]
gi|341637623|gb|EGS62301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HFU-02]
gi|341644319|gb|EGS68544.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae BJG-01]
gi|341646374|gb|EGS70488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-38A1]
gi|356417651|gb|EHH71266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-06A1]
gi|356418523|gb|EHH72120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-21A1]
gi|356423097|gb|EHH76558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-19A1]
gi|356428543|gb|EHH81769.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-22A1]
gi|356430201|gb|EHH83410.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-23A1]
gi|356433556|gb|EHH86745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-28A1]
gi|356439724|gb|EHH92689.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-32A1]
gi|356444735|gb|EHH97544.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-43A1]
gi|356445734|gb|EHH98536.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-33A2]
gi|356450978|gb|EHI03683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-48B2]
gi|356452473|gb|EHI05152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-61A1]
gi|356646959|gb|AET27014.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
str. 2010EL-1786]
gi|378795265|gb|AFC58736.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
IEC224]
gi|395916481|gb|EJH27311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1032(5)]
gi|395917331|gb|EJH28159.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1041(14)]
gi|395918688|gb|EJH29512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1038(11)]
gi|395927689|gb|EJH38452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1042(15)]
gi|395928465|gb|EJH39218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1046(19)]
gi|395931750|gb|EJH42494.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1048(21)]
gi|395939365|gb|EJH50047.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-20A2]
gi|395940781|gb|EJH51462.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-43B1]
gi|395942719|gb|EJH53395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-46A1]
gi|395952108|gb|EJH62722.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-25]
gi|395953721|gb|EJH64334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-45]
gi|395958922|gb|EJH69377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-56A2]
gi|395959527|gb|EJH69955.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-57A2]
gi|395962173|gb|EJH72474.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-42A1]
gi|395970884|gb|EJH80601.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-47A1]
gi|395973487|gb|EJH83046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1030(3)]
gi|395975870|gb|EJH85344.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1047(20)]
gi|408007245|gb|EKG45338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-39A1]
gi|408012536|gb|EKG50313.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-50A1]
gi|408013145|gb|EKG50890.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-41A1]
gi|408018228|gb|EKG55687.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-52A1]
gi|408023467|gb|EKG60630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-56A1]
gi|408024055|gb|EKG61191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55A1]
gi|408032385|gb|EKG68971.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1040(13)]
gi|408032931|gb|EKG69500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-57A1]
gi|408041791|gb|EKG77885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
Cholerae CP1044(17)]
gi|408043275|gb|EKG79281.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1050(23)]
gi|408051987|gb|EKG87053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-16]
gi|408055233|gb|EKG90172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-51A1]
gi|408607691|gb|EKK81094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1033(6)]
gi|408620170|gb|EKK93182.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-1A2]
gi|408624096|gb|EKK97048.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-17A1]
gi|408629787|gb|EKL02456.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-41B1]
gi|408633769|gb|EKL06070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-50A2]
gi|408634659|gb|EKL06894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55C2]
gi|408640712|gb|EKL12498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-59A1]
gi|408641074|gb|EKL12855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-60A1]
gi|408648898|gb|EKL20215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-61A2]
gi|408654235|gb|EKL25377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-77A1]
gi|408655165|gb|EKL26290.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-62A1]
gi|408657620|gb|EKL28698.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-40]
gi|408664453|gb|EKL35290.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-46]
gi|408845315|gb|EKL85431.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-37A1]
gi|408846088|gb|EKL86200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-17A2]
gi|408852563|gb|EKL92385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-02C1]
gi|408856200|gb|EKL95895.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-46B1]
gi|408860012|gb|EKL99666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55B2]
gi|408863739|gb|EKM03213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-44C1]
gi|408867120|gb|EKM06482.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-59B1]
gi|408870398|gb|EKM09678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-62B1]
gi|408878876|gb|EKM17869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-69A1]
gi|429224949|gb|EKY31247.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
PS15]
gi|439974348|gb|ELP50525.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
4260B]
gi|443431230|gb|ELS73782.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-64A1]
gi|443435125|gb|ELS81269.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-65A1]
gi|443439008|gb|ELS88723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-67A1]
gi|443442993|gb|ELS96295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-68A1]
gi|443446795|gb|ELT03451.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-71A1]
gi|443449601|gb|ELT09892.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-72A2]
gi|443453773|gb|ELT17591.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-78A1]
gi|443457254|gb|ELT24651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-7A1]
gi|443461201|gb|ELT32274.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-80A1]
gi|443465308|gb|ELT39968.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-81A1]
gi|448264687|gb|EMB01924.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
str. Inaba G4222]
Length = 208
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++K++R+ A TGQPIE +++ T+RD F+SA +A+E+GL+D +L+
Sbjct: 152 HAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLK 204
>gi|60389653|sp|Q6LNW0.2|CLPP_PHOPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 199
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 24 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG KG RY +PN+R+M++QP G G D++
Sbjct: 84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +H+++ + A TGQP+E V+ T+RD F+SA +A+E+GL+D +L
Sbjct: 144 HAKEILTIKHRLNSLLAKHTGQPLEVVEGDTDRDNFMSADQAVEYGLVDSVL 195
>gi|350572241|ref|ZP_08940546.1| ATP-dependent Clp protease, protease subunit [Neisseria wadsworthii
9715]
gi|349790497|gb|EGZ44406.1| ATP-dependent Clp protease, protease subunit [Neisseria wadsworthii
9715]
Length = 212
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 121/192 (63%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+N A ++Q++ L + + D DI
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVNDHTANLVVAQMLFLESENPDKDIYF 69
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++I+D M+++KP V T+C G AAS A +L+ G KG R+A+PN+RIM+
Sbjct: 70 YINSPGGSVTAGMSIFDTMNFVKPDVSTLCLGQAASMGAFLLSAGTKGKRFALPNSRIMI 129
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++ A TGQP+EKV++ T+RD F+SA A
Sbjct: 130 HQPLISGGLGGQASDIEIHARELIKIKEKLNYFLAKHTGQPLEKVERDTDRDNFMSAEAA 189
Query: 258 MEFGLIDGILET 269
E+GLID ++E
Sbjct: 190 KEYGLIDQVIEN 201
>gi|325264756|ref|ZP_08131485.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
sp. D5]
gi|324030048|gb|EGB91334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
sp. D5]
Length = 193
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGS+ S LAIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTSGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V TVC G+AAS A +L+GG+KG R+A+PNA IM++QP G+ G ++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLSGGKKGKRFALPNAEIMIHQPSGGAQGQATEIHI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ RHK++++ A TGQ ++ ++ TERD ++SA EA E+GLID ++
Sbjct: 139 VAEHILKIRHKLNQILAENTGQSLDVIKVDTERDNYMSALEAKEYGLIDEVI 190
>gi|428773238|ref|YP_007165026.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
stanieri PCC 7202]
gi|428687517|gb|AFZ47377.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
stanieri PCC 7202]
Length = 195
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ + +A ++QL+ L D + DI +
Sbjct: 1 MVPTVIETSGRGERAFDIYSRLLRERIVFLGQQVTDELANSLVAQLLLLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIQPDVCTICVGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A+ TGQP+EK+++ TERD F+SA EA+
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKQLNHYMASHTGQPLEKIEEDTERDFFMSAEEAVN 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDRVV 188
>gi|399949673|gb|AFP65331.1| ATP-dependent, proteolytic subunit [Chroomonas mesostigmatica
CCMP1168]
Length = 234
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 13/216 (6%)
Query: 66 CSTE--HSYKIISGKND-NPPLMP------AVMTPGGP----LDLSSVLFRNRIIFIGQP 112
C E H K I KN +MP A PG P +D+ + L+R RIIF+GQ
Sbjct: 17 CKIENLHFSKKIHKKNSATIKMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQE 76
Query: 113 INSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV 172
I+ +A + I+ ++ L + D I +Y+N PGGS+ S LA+YD M IK +V T+ G+
Sbjct: 77 IDDEIANQIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMYDTMRHIKSEVVTINVGL 136
Query: 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYA 232
AAS A+ ILA GEKG R A+P++RIM++QP G+ G D+K + + + R + YA
Sbjct: 137 AASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQQILRIRKSLTEDYA 196
Query: 233 AFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
TG+P EKV Q +RD F+SA EA+E+GLID ++E
Sbjct: 197 QMTGRPYEKVLQDMDRDNFMSAYEAVEYGLIDRVIE 232
>gi|333375817|ref|ZP_08467617.1| ATP-dependent Clp protease, protease subunit [Kingella kingae ATCC
23330]
gi|332969605|gb|EGK08623.1| ATP-dependent Clp protease, protease subunit [Kingella kingae ATCC
23330]
Length = 205
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 122/193 (63%), Gaps = 6/193 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RIIF+ P+N A ++Q++ L + + D D
Sbjct: 6 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQMLFLESENPDKD 65
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 66 IYFYINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSR 125
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+M++QP G GG D++ E + + K+++M A TG+ + +V++ T+RD F+SA
Sbjct: 126 VMIHQPLISGGLGGQASDIEIHARELLKLKEKLNQMLAEHTGKTLAEVERDTDRDNFMSA 185
Query: 255 AEAMEFGLIDGIL 267
EAME+GLID ++
Sbjct: 186 QEAMEYGLIDKVI 198
>gi|294141768|ref|YP_003557746.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
violacea DSS12]
gi|293328237|dbj|BAJ02968.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
violacea DSS12]
Length = 203
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 114/175 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+ +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERIIFLVGPVEEHMANLVVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGG G R+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPDVSTVCIGQAASMGAFLLAGGAAGKRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + ++K++ M A TGQP+E +++ T+RD F+SAA+A E+GL+D ++ +
Sbjct: 148 HAQEILGIKNKLNEMLAEHTGQPLEVIERDTDRDNFMSAAQAAEYGLVDSVMSKQ 202
>gi|422307873|ref|ZP_16395027.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1035(8)]
gi|408618825|gb|EKK91883.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1035(8)]
Length = 208
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++K++R+ A TGQPIE +++ T+RD F+SA +A+E+GL+D +L+
Sbjct: 152 HAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLK 204
>gi|384439472|ref|YP_005654196.1| ATP-dependent Clp protease proteolytic subunit [Thermus sp.
CCB_US3_UF1]
gi|359290605|gb|AEV16122.1| ATP-dependent Clp protease proteolytic subunit [Thermus sp.
CCB_US3_UF1]
Length = 198
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 121/175 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 22 DIYSRLLKDRIIFLGTPIDAQVANTIVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIY 81
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P++++M++QP G+ G D+
Sbjct: 82 DTMQFVRAPVSTIVIGLAASMAAVILAAGEKGRRYALPHSKVMIHQPWGGARGTASDIAI 141
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ ++ + A TGQP+EKV++ T+RD +LSA EA+ +GLID ++ E
Sbjct: 142 QAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALAYGLIDQVVTRE 196
>gi|153829246|ref|ZP_01981913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae 623-39]
gi|148875284|gb|EDL73419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae 623-39]
Length = 200
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 24 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++K++R+ A TGQPIE +++ T+RD F+SA +A+E+GL+D +L+
Sbjct: 144 HAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLK 196
>gi|393758662|ref|ZP_10347482.1| ATP-dependent Clp protease proteolytic subunit [Alcaligenes
faecalis subsp. faecalis NCIB 8687]
gi|393163098|gb|EJC63152.1| ATP-dependent Clp protease proteolytic subunit [Alcaligenes
faecalis subsp. faecalis NCIB 8687]
Length = 195
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RIIF+ P++ A ++QL+ L + + + DI +Y+N PGGS+Y+ LAIY
Sbjct: 19 DIYSRLLRERIIFLVGPVHDNSANLIVAQLLFLESENPEKDISLYINSPGGSVYAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G+AAS A +L+ G KG R A+PN+RIM++QP G+ G D++
Sbjct: 79 DTMQFVKPEVSTLCTGMAASMGAFLLSSGVKGKRLALPNSRIMIHQPSGGARGQASDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++++ A GQP+E+++ TERD F++A +A+ +GLID ++ T
Sbjct: 139 QAKEILSLRERLNKILAENCGQPVERIELDTERDNFMAAEDAVAYGLIDKVMST 192
>gi|113474441|ref|YP_720502.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
gi|110165489|gb|ABG50029.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
Length = 231
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 115/173 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
DL S L R RIIF+G ++ +A +Q++ L D + DI +Y+N PGGS+ + +AI
Sbjct: 43 FDLYSRLLRERIIFLGTQVDENLANTITAQMLFLDAEDPEKDIQLYINSPGGSVTAGMAI 102
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++P V T+C+G+AAS A +L+GG KG R ++P++RIM++QP G+ G D++
Sbjct: 103 YDTMQQVRPDVVTICYGLAASMGAFLLSGGAKGKRMSLPSSRIMIHQPLGGAQGQAVDIE 162
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + K++ + A TGQP+EK++ TERD F+SA EA +GLID ++
Sbjct: 163 IQAKEILYHKRKLNELLAEHTGQPLEKIEVDTERDFFMSAEEAKNYGLIDQVI 215
>gi|329114674|ref|ZP_08243433.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
pomorum DM001]
gi|326696154|gb|EGE47836.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
pomorum DM001]
Length = 237
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 128/207 (61%), Gaps = 11/207 (5%)
Query: 72 YKIISGKNDNPP-------LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQR 120
Y +SG D P L+P V+ T G D+ S L + RIIF+ P+ VA
Sbjct: 15 YTGMSGMRDRDPVEIFSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASL 74
Query: 121 AISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 180
+QL+ L +++ + +I Y+N PGG + + LAIYD M +I+ V TVC G AAS +++
Sbjct: 75 ISAQLLYLESVNPNKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLL 134
Query: 181 LAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIE 240
LAGGEKG R+A+PNAR+M++QP G+ G D++ Q E +I R K++ +Y TG+ +E
Sbjct: 135 LAGGEKGRRFALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQKLNEIYREHTGRTLE 194
Query: 241 KVQQYTERDRFLSAAEAMEFGLIDGIL 267
+++Q ERD ++SA EA FG++D ++
Sbjct: 195 EIEQKLERDTYMSAHEAQSFGIVDEVI 221
>gi|223973663|gb|ACN31019.1| unknown [Zea mays]
Length = 280
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 114/169 (67%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G P+ +A ++QL+ L ID DI+MY+N PGGS+ + +AI+D M
Sbjct: 98 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPTKDIIMYVNSPGGSVTAGMAIFDTM 157
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 158 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 217
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQP++K+ T+RD F+SA EA E+GLIDG++
Sbjct: 218 EMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVI 266
>gi|87301613|ref|ZP_01084453.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
gi|87283830|gb|EAQ75784.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
Length = 213
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 126/202 (62%), Gaps = 4/202 (1%)
Query: 71 SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 126
S+ I + +P ++P V+ G D+ S L R RIIF+G I+ VA ++QL+
Sbjct: 7 SHPIHNSWQASPGVLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADSLVAQLL 66
Query: 127 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 186
L D + DI +Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG K
Sbjct: 67 FLEAEDPEKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTK 126
Query: 187 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 246
G R A+P+ARIM++QP G+ G D++ Q E + + ++ + A TGQP+ K+ + T
Sbjct: 127 GKRMALPSARIMIHQPLGGAQGQAVDIEIQAKEILFLKDTLNGLMAEHTGQPLAKIAEDT 186
Query: 247 ERDRFLSAAEAMEFGLIDGILE 268
+RD FLS EA+ +GLID +++
Sbjct: 187 DRDYFLSPPEAVSYGLIDRVVD 208
>gi|119503321|ref|ZP_01625405.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
proteobacterium HTCC2080]
gi|119460967|gb|EAW42058.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
proteobacterium HTCC2080]
Length = 212
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 124/200 (62%), Gaps = 11/200 (5%)
Query: 79 NDNPP-------LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVT 127
+D PP L+P V+ T G D+ S L + R+IF P+ +A ++QL+
Sbjct: 3 HDRPPQDMSNLGLIPMVIEQTSRGERSFDIYSRLLKERVIFAVGPVEDNMANLIVAQLLF 62
Query: 128 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKG 187
L + + D DI +Y+N PGGS+ + L+IYD M ++KP V T+C G AAS A +L+GG G
Sbjct: 63 LESENPDKDIHLYINSPGGSVTAGLSIYDTMQFVKPDVSTMCLGQAASMGAFLLSGGASG 122
Query: 188 MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTE 247
RY +PNAR M++QP G+ G D+ Q E +I R +++R+ A TGQP+E +++ TE
Sbjct: 123 KRYILPNARTMIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDTE 182
Query: 248 RDRFLSAAEAMEFGLIDGIL 267
RDRF+ A ++ +GL+D ++
Sbjct: 183 RDRFMDAEQSQSYGLVDHVV 202
>gi|218248285|ref|YP_002373656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8801]
gi|257060388|ref|YP_003138276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8802]
gi|218168763|gb|ACK67500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8801]
gi|256590554|gb|ACV01441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8802]
Length = 201
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ + A ++QL+ L D D DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENANLIVAQLLFLEAEDPDKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A+ TGQP++K+ + TERD F+SA +A+E
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHTGQPLDKIAEDTERDFFMSAEDALE 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDQVI 188
>gi|15641924|ref|NP_231556.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|147674197|ref|YP_001217455.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
O395]
gi|153824129|ref|ZP_01976796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae B33]
gi|153826398|ref|ZP_01979065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae MZO-2]
gi|227082052|ref|YP_002810603.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
M66-2]
gi|227118370|ref|YP_002820266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae O395]
gi|254286858|ref|ZP_04961810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae AM-19226]
gi|18203199|sp|Q9KQS6.1|CLPP_VIBCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|172047646|sp|A5F6X0.1|CLPP_VIBC3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763808|sp|C3LNM6.1|CLPP_VIBCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|9656458|gb|AAF95070.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|126518348|gb|EAZ75571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae B33]
gi|146316080|gb|ABQ20619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae O395]
gi|149739876|gb|EDM54067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae MZO-2]
gi|150423008|gb|EDN14957.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae AM-19226]
gi|227009940|gb|ACP06152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae M66-2]
gi|227013820|gb|ACP10030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae O395]
Length = 200
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 24 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++K++R+ A TGQPIE +++ T+RD F+SA +A+E+GL+D +L+
Sbjct: 144 HAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLK 196
>gi|238923369|ref|YP_002936885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
rectale ATCC 33656]
gi|259585954|sp|C4ZGF4.1|CLPP_EUBR3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|238875044|gb|ACR74751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
rectale ATCC 33656]
gi|291525457|emb|CBK91044.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
rectale DSM 17629]
gi|291528435|emb|CBK94021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
rectale M104/1]
Length = 193
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N A ++QL+ L + D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDIHLYINSPGGMVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTICIGLAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAKGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ ++ +++ + AA TG+P E + TERD ++SA EA E+GLID ++
Sbjct: 139 AAENILKTKKRLNEILAANTGKPYETIAADTERDNYMSAQEAAEYGLIDSVI 190
>gi|238023189|ref|ZP_04603615.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
gi|237865572|gb|EEP66712.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
Length = 206
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RIIF+ P+N A ++QL+ L + + D D
Sbjct: 7 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKD 66
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 67 IYFYINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSR 126
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+M++QP G GG D++ E + + K+++M A TG+ +E++++ T+RD F+SA
Sbjct: 127 VMIHQPLISGGLGGQASDIEIHARELLKLKEKLNQMLAEHTGKSLEQIERDTDRDNFMSA 186
Query: 255 AEAMEFGLIDGILET 269
EA ++GLID ++ T
Sbjct: 187 QEAADYGLIDKVITT 201
>gi|421745790|ref|ZP_16183628.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
HPC(L)]
gi|409775704|gb|EKN57162.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
HPC(L)]
Length = 216
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ +N A I+QL+ L + + D D+ +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERLVFMVGEVNDQTANLVIAQLLFLESENPDKDVFL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LA+YD M +IKP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAVYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRLALPNSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + A TGQP+EK+ + T+RD F+S +A++
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRERLNSILAEVTGQPVEKIARDTDRDNFMSGDQAVD 204
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 205 YGLIDKVI 212
>gi|424657049|ref|ZP_18094334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-81A2]
gi|408053607|gb|EKG88612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-81A2]
Length = 190
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 14 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 74 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++K++R+ A TGQPIE +++ T+RD F+SA +A+E+GL+D +L+
Sbjct: 134 HAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGLVDAVLK 186
>gi|242035957|ref|XP_002465373.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
gi|241919227|gb|EER92371.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
Length = 283
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 114/169 (67%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G P+ +A ++QL+ L ID DI+MY+N PGGS+ + +AI+D M
Sbjct: 101 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPTKDIIMYVNSPGGSVTAGMAIFDTM 160
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 161 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 220
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQP++K+ T+RD F+SA EA E+GLIDG++
Sbjct: 221 EMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVI 269
>gi|411118195|ref|ZP_11390576.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Oscillatoriales cyanobacterium JSC-12]
gi|410711919|gb|EKQ69425.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Oscillatoriales cyanobacterium JSC-12]
Length = 207
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L D + DI +
Sbjct: 7 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSDLANLVVAQLLFLDAEDPEKDIYL 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 67 YINSPGGSVTAGMGIFDTMKQIRPDVCTICLGLAASMGAFLLSAGAKGKRMSLPHSRIMI 126
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A TGQP ++Q+ TERD F+SA EA +
Sbjct: 127 HQPLGGAQGQATDIEIQAKEILYHKQRLNELLAEHTGQPFSRIQEDTERDFFMSAGEAKD 186
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 187 YGLIDQVID 195
>gi|148553517|ref|YP_001261099.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas
wittichii RW1]
gi|148498707|gb|ABQ66961.1| Endopeptidase Clp [Sphingomonas wittichii RW1]
Length = 218
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 112/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+ + +A +QL+ L + + DI MY+N PGG + + LAI
Sbjct: 33 FDIYSRLLRERIIFVTGQVEDHMASLITAQLLFLESENPKKDIFMYINSPGGVVTAGLAI 92
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P+VGTVC G AAS + +LA GE GMR A+ N+RIM++QP G+ G D++
Sbjct: 93 HDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTNSRIMVHQPSGGAQGMAADIE 152
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + RH+++ +YA +T QPIE ++ +RD+FL A EA FGLID + +
Sbjct: 153 IQAREILRMRHRLNSLYAKYTKQPIEAIEAAMDRDKFLEADEAKAFGLIDEVFD 206
>gi|148259928|ref|YP_001234055.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
cryptum JF-5]
gi|146401609|gb|ABQ30136.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidiphilium
cryptum JF-5]
Length = 211
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+ V +QL+ L + + +I Y+N PGG + + LAIY
Sbjct: 31 DIFSRLLKERIIFLTGPVYDQVGSLIAAQLLFLESENPSKEIAFYINSPGGVVSAGLAIY 90
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V TVC G AAS +++LA GEKG R+A+PN+RIM++QP G+ G D++
Sbjct: 91 DTMQYIKSPVSTVCIGQAASMGSLLLAAGEKGKRFALPNSRIMVHQPSGGAQGQASDIEI 150
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + R +++ +Y TGQ +E ++Q ERDRF+SA EA EFGL+D ++E +
Sbjct: 151 QAREILTLRRRLNDIYVTHTGQSLEAIEQALERDRFMSANEAQEFGLVDEVVEKK 205
>gi|145219256|ref|YP_001129965.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
phaeovibrioides DSM 265]
gi|189082462|sp|A4SDA4.1|CLPP_PROVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|145205420|gb|ABP36463.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
phaeovibrioides DSM 265]
Length = 225
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 129/212 (60%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHASKLYSGAIEEGIQNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA ++QL+ L + D D DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPDRDIFIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R ++ + A TG
Sbjct: 125 GAFLLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEIMAKHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ +++V++ +ERDR++ A EA+E+G+ID + E
Sbjct: 185 KDVQQVREDSERDRWMDAGEALEYGIIDQVFE 216
>gi|326403118|ref|YP_004283199.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
multivorum AIU301]
gi|338981066|ref|ZP_08632302.1| ClpP [Acidiphilium sp. PM]
gi|325049979|dbj|BAJ80317.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
multivorum AIU301]
gi|338208032|gb|EGO95931.1| ClpP [Acidiphilium sp. PM]
Length = 209
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+ V +QL+ L + + +I Y+N PGG + + LAIY
Sbjct: 29 DIFSRLLKERIIFLTGPVYDQVGSLIAAQLLFLESENPSKEIAFYINSPGGVVSAGLAIY 88
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V TVC G AAS +++LA GEKG R+A+PN+RIM++QP G+ G D++
Sbjct: 89 DTMQYIKSPVSTVCIGQAASMGSLLLAAGEKGKRFALPNSRIMVHQPSGGAQGQASDIEI 148
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + R +++ +Y TGQ +E ++Q ERDRF+SA EA EFGL+D ++E +
Sbjct: 149 QAREILTLRRRLNDIYVTHTGQSLEAIEQALERDRFMSANEAQEFGLVDEVVEKK 203
>gi|269798318|ref|YP_003312218.1| ATP-dependent Clp protease proteolytic subunit ClpP [Veillonella
parvula DSM 2008]
gi|269094947|gb|ACZ24938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
parvula DSM 2008]
Length = 197
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG RYA+P+ARIM++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARIMIHQPLGGVQGQASEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + R +++ + A+ +GQ IE V + T+RD F+SA +A+E+GLID +L E
Sbjct: 138 HAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEYGLIDEVLTRE 192
>gi|113475211|ref|YP_721272.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
gi|110166259|gb|ABG50799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
Length = 203
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 121/187 (64%), Gaps = 4/187 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RII++G+ I+S +A + QL+ L + D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIIYLGEAIDSELANLIVGQLLYLDSEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + IYD M ++P V T+C G+AAS A +L+GG KG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGMGIYDTMRHVRPDVCTICMGIAASMGAFLLSGGTKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++ A TGQ IEK+ + TERD F+SA EAME
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKYLNECLAEHTGQSIEKITEDTERDFFMSATEAME 180
Query: 260 FGLIDGI 266
+G+ID +
Sbjct: 181 YGIIDQV 187
>gi|255658239|ref|ZP_05403648.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
multacida DSM 20544]
gi|260849549|gb|EEX69556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
multacida DSM 20544]
Length = 199
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKDRIIFLGGPIDDAVANTVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG RYA+PNARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICIGQAASMGALLLTAGAKGKRYALPNARIMIHQPLGGAQGQSTDIQI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E R I+ + TG+ E V Q TERD F++A EA +GL+D ++
Sbjct: 134 QAREIQRIREVINDILVESTGKDRETVVQDTERDNFMTAEEAKAYGLVDEVI 185
>gi|189345948|ref|YP_001942477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
limicola DSM 245]
gi|189340095|gb|ACD89498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
limicola DSM 245]
Length = 225
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 131/212 (61%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFDHHARKLYSGAIEEGIRNTLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS
Sbjct: 65 VAGLVMAQLIFLESEDPERDIFIYINSPGGSVSAGLGIYDTMQYIRPDIATVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R ++ + A TG
Sbjct: 125 GAFLLASGTKGKRASLPHSRIMIHQPSGGAQGQETDIIIQAREIEKIRKLLEELLAKHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++++++ +ERDR+++AAEA+E+G+ID + E
Sbjct: 185 RDVQQIREDSERDRWMNAAEALEYGIIDQVFE 216
>gi|451979976|ref|ZP_21928378.1| ATP-dependent Clp protease, proteolytic subunit clpP [Nitrospina
gracilis 3/211]
gi|451762848|emb|CCQ89596.1| ATP-dependent Clp protease, proteolytic subunit clpP [Nitrospina
gracilis 3/211]
Length = 215
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIGQ I +A I+QL+ L + + D DI +Y+N PGG + S LAIY
Sbjct: 29 DIYSRLLKDRIIFIGQQIEDHMANLIIAQLLFLESDEPDQDIYLYINSPGGHVSSGLAIY 88
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG R+A+PN+R+M++QP G G D++
Sbjct: 89 DTMQYIKPDVQTICIGQAASMGALLLTAGTKGKRFALPNSRVMIHQPSGGFQGQSTDIQI 148
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +D + A +GQP + +++ TERD F++ +A E+GLID ++
Sbjct: 149 HAEEILKVRDTLDDILAKHSGQPKDVIRRDTERDHFMTGEQAKEYGLIDNVI 200
>gi|218961379|ref|YP_001741154.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Candidatus Cloacamonas acidaminovorans]
gi|167730036|emb|CAO80948.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Candidatus Cloacamonas acidaminovorans str.
Evry]
Length = 194
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I +A ++QL+ L D + DI MY+N PGG I + LAIY
Sbjct: 19 DIYSRLLKDRIVFVGGVIEDNLANTVVAQLLHLEGEDPERDIYMYINSPGGIISAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G AAS AA++LA G G R A+PN+RIM++QP G+ G D++
Sbjct: 79 DTMQYIKPRVSTICIGQAASMAAVLLAAGAPGKRSALPNSRIMIHQPMGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ + +GQ IEK+ + TER+ F+SA EAME+G+ID ++
Sbjct: 139 QAKEILYLRGRMNEILHKHSGQSIEKIMEDTERNYFMSAEEAMEYGIIDEVI 190
>gi|357484629|ref|XP_003612602.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|355513937|gb|AES95560.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|388495738|gb|AFK35935.1| unknown [Medicago truncatula]
Length = 297
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 119/188 (63%)
Query: 83 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
P P G D +L R RI+F+G I+ VA +SQL+ L D DI +++N
Sbjct: 75 PQTPERAIRGAESDTMGLLLRERIVFLGSEIDDFVADAIMSQLLLLDAQDPTKDIKLFIN 134
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
PGGS+ + +AIYD + ++ V T+ G++AS A+IIL GG KG R AMPN RIM+ QP
Sbjct: 135 SPGGSLSATMAIYDAVQLVRADVSTIAMGISASTASIILGGGTKGKRLAMPNTRIMIAQP 194
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
G+ G DV+ Q E + +++ + R+ ++FTG+ +E+V + +RDR+LS EA+E+G+
Sbjct: 195 PGGASGQAIDVEIQAKEIMHNKNNVSRIISSFTGRSLEQVLKDIDRDRYLSPIEAVEYGI 254
Query: 263 IDGILETE 270
IDG+++ E
Sbjct: 255 IDGVIDRE 262
>gi|282850557|ref|ZP_06259936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
parvula ATCC 17745]
gi|294792182|ref|ZP_06757330.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. 6_1_27]
gi|294794047|ref|ZP_06759184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. 3_1_44]
gi|417001079|ref|ZP_11940993.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella parvula ACS-068-V-Sch12]
gi|282580050|gb|EFB85454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
parvula ATCC 17745]
gi|294455617|gb|EFG23989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. 3_1_44]
gi|294457412|gb|EFG25774.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. 6_1_27]
gi|333975562|gb|EGL76441.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella parvula ACS-068-V-Sch12]
Length = 197
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG RYA+P+ARIM++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARIMIHQPLGGVQGQASEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + R +++ + A+ +GQ IE V + T+RD F+SA +A+E+GLID +L E
Sbjct: 138 HAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEYGLIDEVLTRE 192
>gi|253575671|ref|ZP_04853007.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845009|gb|EES73021.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
Length = 196
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+ I+ VA I+QL+ LA D + DI +Y+N PGGS+ + + IY
Sbjct: 19 DIYSRLLKDRIIFLSNAIDDEVANLVIAQLLFLAAEDPEKDIHLYINSPGGSVTAGMGIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS +++L G G RYA+PN+ +M++QP G G D+K
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGSLLLTAGAPGKRYALPNSEVMIHQPLGGVRGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +R K++++Y TGQP+EK+++ T+RD F+SA EA +G+ID ++
Sbjct: 139 HADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAEEAKAYGIIDQVI 190
>gi|452973448|gb|EME73270.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sonorensis
L12]
Length = 198
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ + TGQP+E +++ T+RD F +A EA E+GLID +L
Sbjct: 139 AAKRILSLRDKLNKILSERTGQPLEIIERDTDRDNFKTAEEAKEYGLIDKVL 190
>gi|83589392|ref|YP_429401.1| ATP-dependent Clp protease proteolytic subunit [Moorella
thermoacetica ATCC 39073]
gi|115311785|sp|Q2RL31.1|CLPP_MOOTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|83572306|gb|ABC18858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
thermoacetica ATCC 39073]
Length = 199
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+Q++ L D D DI +Y+N PGGSI + +AI+
Sbjct: 20 DIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAGMAIF 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 80 DTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R ++R+ + TG+P+E++ + T+RD F++A EA E+GLID ++
Sbjct: 140 HAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYGLIDEVI 191
>gi|73663232|ref|YP_302013.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|418576800|ref|ZP_13140932.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|124013830|sp|Q49VZ2.1|CLPP_STAS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|72495747|dbj|BAE19068.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|379324465|gb|EHY91611.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 194
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++++ A TGQ IEK++Q T+RD FLSA EA ++GL+D ++ E
Sbjct: 139 AANHILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAEEAKDYGLVDQVMVPE 193
>gi|171463607|ref|YP_001797720.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|171193145|gb|ACB44106.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 209
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R R+IF+ +N A I+QL+ L + + D +I +
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVIFLVGEVNDQTANLVIAQLLFLESENPDKEISL 77
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG++ + LAIYD M +IKP V T+C G+AAS A +L GE G RYA+PN+R+M+
Sbjct: 78 YINSPGGAVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGENGKRYALPNSRVMI 137
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++++ A TGQ IE + + T+RD F+SA +A +
Sbjct: 138 HQPLGGARGQASDIEIQAREILYLRERLNKILADRTGQSIETIAKDTDRDNFMSAEQARD 197
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 198 YGLIDKVIE 206
>gi|347528435|ref|YP_004835182.1| ATP-dependent Clp protease proteolytic subunit [Sphingobium sp.
SYK-6]
gi|345137116|dbj|BAK66725.1| ATP-dependent Clp protease proteolytic subunit [Sphingobium sp.
SYK-6]
Length = 211
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 113/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+ + +A ++QL+ L + + DI MY+N PGG + S +AI
Sbjct: 27 FDIYSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENPKKDIWMYINSPGGVVTSGMAI 86
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+PKVGTVC G AAS + +LA GE GMR+A+ NARIM++QP G+ G D++
Sbjct: 87 HDTMQYIRPKVGTVCIGQAASMGSFLLAAGEPGMRFALSNARIMIHQPSGGAQGMASDIE 146
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R +++ +Y +TGQP++K++ +RD FL A EA FGL+D + +
Sbjct: 147 IQAKEILRIRRRLNDLYVKYTGQPLDKIEAAMDRDTFLEADEAKAFGLVDQVYD 200
>gi|187776850|ref|ZP_02993323.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC
15579]
gi|424826849|ref|ZP_18251700.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
sporogenes PA 3679]
gi|187775509|gb|EDU39311.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium sporogenes ATCC 15579]
gi|365980550|gb|EHN16576.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
sporogenes PA 3679]
Length = 194
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + + +N A ++QL+ L D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIYLYINSPGGSITSGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ + K++ + + TG+P+E+V+ TERD FLSA EA E+GLID +++ +
Sbjct: 139 HAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYGLIDEVIDKK 193
>gi|134094958|ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subunit [Herminiimonas
arsenicoxydans]
gi|133738861|emb|CAL61908.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Herminiimonas arsenicoxydans]
Length = 209
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 125/190 (65%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + R+IF+ P+N A ++QL+ L + + D DI +
Sbjct: 18 MVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDHAANLIVAQLLFLESENPDKDISL 77
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AI+D M +IKP V T+C G+AAS A +LA GEKG R+++PN+RIM+
Sbjct: 78 YINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMI 137
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++++ A TG+ +E++ + T+RD F+SA A+E
Sbjct: 138 HQPLGGAQGQASDIEIQAREILYLRERLNQILADRTGKTLEEISRDTDRDNFMSADAAVE 197
Query: 260 FGLIDGILET 269
+G+ID +L T
Sbjct: 198 YGMIDKVLTT 207
>gi|410666834|ref|YP_006919205.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermacetogenium phaeum DSM 12270]
gi|409104581|gb|AFV10706.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermacetogenium phaeum DSM 12270]
Length = 201
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+Q++ L D + DI +Y+N PGGSI + LAI+
Sbjct: 23 DIYSRLLKDRIIFLGTPIDDSVANIIIAQMLFLEAEDPEKDIYLYINSPGGSITAGLAIF 82
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G K R+A PN+ IM++QP G+ G DV+
Sbjct: 83 DTMRYVKPDVSTICVGMAASMGAFLLAAGAKKKRFATPNSEIMIHQPMGGAQGQATDVEI 142
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
V R +++R+ A TGQ +E++ + T+RD F+ A EA E+G+ID ++
Sbjct: 143 HARRIVKVRDRLNRILAELTGQSVERISRDTDRDTFMDAEEAKEYGIIDEVI 194
>gi|297569273|ref|YP_003690617.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfurivibrio alkaliphilus AHT2]
gi|296925188|gb|ADH85998.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfurivibrio alkaliphilus AHT2]
Length = 200
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 119/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L + RIIF+G +N VA I+Q++ L D D DI
Sbjct: 3 LIPFVIEQTPRGERSYDIYSRLLKERIIFLGTGVNDDVANVIIAQMLFLEADDPDKDITF 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + LAIYD M +IK V T+C G AAS A++LA G +G RYA+PN+RI++
Sbjct: 63 YINSPGGVVTAGLAIYDTMRYIKCDVATLCLGQAASMGAVLLAAGTEGKRYALPNSRILI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E + R ++R+ A+ TGQ I+++Q+ TERD F+SA E+
Sbjct: 123 HQPMGGYQGQASDIDIHAKEILRMRQDLNRILASHTGQSIKRIQKDTERDYFMSAEESKT 182
Query: 260 FGLIDGIL 267
+G+ID +L
Sbjct: 183 YGIIDKVL 190
>gi|255284021|ref|ZP_05348576.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella
formatexigens DSM 14469]
gi|255265474|gb|EET58679.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Marvinbryantia formatexigens DSM 14469]
Length = 194
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ + + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSANLIVAQLLFLESEDPAKDIQLYINSPGGSVSAGWAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +LAGG KG R+A+PNA+IM++QP G+ G D+K
Sbjct: 79 DTMQYIKCDVSTICMGMAASMGAFLLAGGAKGKRFALPNAQIMIHQPSGGAKGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + SR +++ AA TGQPI+ ++ TERD +++A EA +GLID ++
Sbjct: 139 VAEEILKSRKRLNEYLAANTGQPIDVIEADTERDNYMTAEEAKAYGLIDAVI 190
>gi|428312433|ref|YP_007123410.1| ATP-dependent Clp protease proteolytic subunit ClpP [Microcoleus
sp. PCC 7113]
gi|428254045|gb|AFZ20004.1| ATP-dependent Clp protease proteolytic subunit ClpP [Microcoleus
sp. PCC 7113]
Length = 230
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+G ++ VA I+QL+ L D + DI +Y+N PGGS+ + +A+
Sbjct: 42 FDIYSRLLRERIIFLGTQVDDTVADSIIAQLLFLDAEDPEKDIQLYINSPGGSVTAGMAM 101
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+CFG+AAS A +L G G R A+PN+RIM++QP G+ G D++
Sbjct: 102 YDTMQQIRPDVVTICFGLAASMGAFLLTAGAPGKRMALPNSRIMIHQPLGGAQGQAIDIE 161
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + ++++ A TGQ +EK++ TERD F+SAAEA ++GLID ++
Sbjct: 162 IQAREILYHKRTLNQLLAHHTGQSLEKIEADTERDFFMSAAEAKDYGLIDQVI 214
>gi|168186116|ref|ZP_02620751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum C str. Eklund]
gi|169296133|gb|EDS78266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum C str. Eklund]
Length = 195
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
N + + K++++ + TG+P+E +++ ERD F+ A EA E+GLID ++
Sbjct: 139 HANRILKIKDKLNKILSERTGKPLEVIKKDVERDNFMEAEEAKEYGLIDDVI 190
>gi|308233830|ref|ZP_07664567.1| ATP-dependent Clp protease proteolytic subunit ClpP [Atopobium
vaginae DSM 15829]
gi|328943800|ref|ZP_08241265.1| ATP-dependent Clp protease, protease subunit [Atopobium vaginae DSM
15829]
gi|327491769|gb|EGF23543.1| ATP-dependent Clp protease, protease subunit [Atopobium vaginae DSM
15829]
Length = 204
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 83 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ TP G D+ S L +RI+F+G+ I A I+QL+ L + D D DI
Sbjct: 8 PLIPYVVEQTPRGERSYDIFSRLLNDRIVFLGEAITRDSANLVIAQLLHLESQDPDKDIA 67
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y++ PGG +Y+ L I D M++IKP V T+C G+AAS A+++LA G KG R +PN+ +M
Sbjct: 68 LYIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMAASMASVLLAAGAKGKRMCLPNSMVM 127
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP SG+ G D++ +E R+ ++ + A +TGQ +EK+ Q TERD ++ A EA
Sbjct: 128 IHQPSSGAQGQQTDIQIVADETKWIRNHMNELLAQYTGQTVEKINQDTERDNYMRAKEAC 187
Query: 259 EFGLIDGIL 267
++GL+D ++
Sbjct: 188 DYGLVDKVI 196
>gi|383317431|ref|YP_005378273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Frateuria
aurantia DSM 6220]
gi|379044535|gb|AFC86591.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Frateuria
aurantia DSM 6220]
Length = 209
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ +N VA I+Q++ L + + D DI +Y+N PGG + + LAIY
Sbjct: 27 DIYSRLLKERVIFLVGEVNDQVANVLIAQMLFLESENPDKDIHLYINSPGGVVTAGLAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G A S A+++L G KG R+++PN+R+M++QP G+ G D++
Sbjct: 87 DTMQYIKCDVSTMCVGQACSAASLLLMAGAKGKRFSLPNSRVMIHQPSGGARGQATDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R K++++Y TGQP+EK+++ ERDRF+SA A E+GLID +L+
Sbjct: 147 QAQEILYLRRKLNQIYVDHTGQPLEKIERDMERDRFMSAETAKEYGLIDEVLD 199
>gi|124023248|ref|YP_001017555.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9303]
gi|123963534|gb|ABM78290.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9303]
Length = 197
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M +KP V TVC G+AAS A +L G G R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + +++R+ A TGQP+E++Q+ T+RD F+S EA+
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNRVLADRTGQPLERIQEDTDRDFFMSPTEAVG 180
Query: 260 FGLIDGILE 268
+GL+D +++
Sbjct: 181 YGLVDSVID 189
>gi|307252913|ref|ZP_07534801.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306859551|gb|EFM91576.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 190
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++Q++ L D + DI +Y+N PGG + + LAIY
Sbjct: 13 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 72
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G A S A +L+GG KG R+A+PNAR+M++QP G+ G D++
Sbjct: 73 DTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQI 132
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + + R A +GQP EKV TERD F+SA EAME+GLID +L
Sbjct: 133 QAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVL 184
>gi|410446864|ref|ZP_11300967.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [SAR86
cluster bacterium SAR86E]
gi|409980536|gb|EKO37287.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [SAR86
cluster bacterium SAR86E]
Length = 204
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 125/193 (64%), Gaps = 4/193 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ TP G D+ S L + RIIF+ PI+ ++ ++QL+ L + + + D
Sbjct: 5 NSGLVPMVVEQTPRGERAFDIYSRLLKERIIFLSGPIDDYISNLVVAQLLFLESENPEKD 64
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGG I S LAIYD M +I P+V T+C G AAS +++LAGG KG R+A+ N+R
Sbjct: 65 ISIYINSPGGVISSGLAIYDTMQFIAPEVSTLCIGQAASMGSLLLAGGAKGKRFALTNSR 124
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
IM++QP G G D + E ++ + K++ + + TG+ ++KV+Q T+RD FL+A E
Sbjct: 125 IMIHQPLGGFQGQASDFEIHAKEMLLVKQKVNEILSKHTGKTLKKVEQDTDRDNFLNAKE 184
Query: 257 AMEFGLIDGILET 269
A +G+ID ILE+
Sbjct: 185 AKSYGIIDEILES 197
>gi|383784111|ref|YP_005468680.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
ferrooxidans C2-3]
gi|383083023|dbj|BAM06550.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
ferrooxidans C2-3]
Length = 200
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 112/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA I+QL+ L + D DI +Y+N PGG + + AIY
Sbjct: 18 DIYSRLLKERIIFLGTPIDDNVANLVIAQLLFLESEDASKDINIYINSPGGVVTAGFAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A +LA G KG R+A+PNAR+M++QP G G D+
Sbjct: 78 DTMQYIKPDVSTICVGQAASMGAFLLAAGAKGKRFALPNARVMIHQPLGGFQGQATDIAI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + + ++ + A TGQ +++++Q TERD FLSA E+ ++GL+D ++ +
Sbjct: 138 HAKEILKMKSHLNELLAHHTGQALQRIEQDTERDYFLSADESKDYGLVDKVMSSH 192
>gi|317130215|ref|YP_004096497.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
cellulosilyticus DSM 2522]
gi|315475163|gb|ADU31766.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cellulosilyticus DSM 2522]
Length = 195
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAADDPEKDISLYINSPGGSITAGMAIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+PKV T+C G+AAS A +LA GE G R+A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIQPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEVMIHQPLGGAQGQAADIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
V R K++ + A TGQPIE + + T+RD F+++ EA ++GLID ++E +
Sbjct: 139 HAKRIVQMREKLNEILAERTGQPIEVIARDTDRDNFMTSFEAKKYGLIDEVMEKK 193
>gi|258621302|ref|ZP_05716336.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM573]
gi|258625374|ref|ZP_05720271.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM603]
gi|262166052|ref|ZP_06033789.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM223]
gi|262171083|ref|ZP_06038761.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
MB-451]
gi|424807155|ref|ZP_18232563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
mimicus SX-4]
gi|449144449|ref|ZP_21775264.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus CAIM
602]
gi|258582365|gb|EEW07217.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM603]
gi|258586690|gb|EEW11405.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM573]
gi|261892159|gb|EEY38145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
MB-451]
gi|262025768|gb|EEY44436.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM223]
gi|342325097|gb|EGU20877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
mimicus SX-4]
gi|449079950|gb|EMB50869.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus CAIM
602]
Length = 208
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++K++R+ A TGQP+E +++ T+RD F+SA +A+E+GL+D +L+
Sbjct: 152 HAKEILTIKNKLNRLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVLK 204
>gi|94958239|gb|ABF47251.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
xylosus]
Length = 194
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++++ A TGQ IEK+++ T+RD FLSA EA E+GL+D ++ E
Sbjct: 139 AANHILKTRAKLNQILAERTGQSIEKIEKDTDRDNFLSAEEAKEYGLVDQVMVPE 193
>gi|443324676|ref|ZP_21053413.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xenococcus
sp. PCC 7305]
gi|442795717|gb|ELS05067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xenococcus
sp. PCC 7305]
Length = 219
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI +Y
Sbjct: 27 LPMVVEQSGIGERSFDIYSRLLRERIIFLGTAIDDKVADSVVAQLLYLEAEDPEKDIQLY 86
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+YS +AIYD M I+P V T+C+G+AAS A +L+GG KG R ++P++RIM++
Sbjct: 87 INSPGGSVYSGMAIYDTMQQIQPDVVTICYGIAASMGAFLLSGGTKGKRMSLPSSRIMIH 146
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G D++ Q E + + +++ + A T Q +K+ TERD ++S+ EA E+
Sbjct: 147 QPLGGAQGQAVDIEIQAKEILYIKKRLNELIAGHTEQDFDKISLDTERDFYMSSEEAKEY 206
Query: 261 GLIDGIL 267
GLID ++
Sbjct: 207 GLIDSVI 213
>gi|32035048|ref|ZP_00135114.1| COG0740: Protease subunit of ATP-dependent Clp proteases
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208746|ref|YP_001053971.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165976699|ref|YP_001652292.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|307246197|ref|ZP_07528278.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307255177|ref|ZP_07536995.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257345|ref|ZP_07539115.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307259615|ref|ZP_07541339.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261756|ref|ZP_07543422.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|166201796|sp|A3N1T0.1|CLPP_ACTP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706436|sp|B0BQL3.1|CLPP_ACTPJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|126097538|gb|ABN74366.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876800|gb|ABY69848.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|306852806|gb|EFM85030.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862050|gb|EFM94026.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306864195|gb|EFM96108.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306866260|gb|EFM98124.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868574|gb|EFN00385.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 196
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++Q++ L D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G A S A +L+GG KG R+A+PNAR+M++QP G+ G D++
Sbjct: 79 DTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + + R A +GQP EKV TERD F+SA EAME+GLID +L
Sbjct: 139 QAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVL 190
>gi|78043074|ref|YP_359188.1| ATP-dependent Clp protease proteolytic subunit [Carboxydothermus
hydrogenoformans Z-2901]
gi|90101405|sp|Q3AF96.1|CLPP_CARHZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|77995189|gb|ABB14088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Carboxydothermus hydrogenoformans Z-2901]
Length = 195
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++R IFIG PI+ VA I+Q++ L D + DI +Y+N PGG I + +AIY
Sbjct: 20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A +LA G KG R+++P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R ++ + TGQP EK+++ TERD F+SAAEA E+G+ID ++
Sbjct: 140 HAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191
>gi|339021745|ref|ZP_08645737.1| Clp protease proteolytic subunit ClpP [Acetobacter tropicalis NBRC
101654]
gi|338751241|dbj|GAA09041.1| Clp protease proteolytic subunit ClpP [Acetobacter tropicalis NBRC
101654]
Length = 234
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ P+ VA +QL+ L +++ +I Y+N PGG + + LAI
Sbjct: 45 FDIYSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPTKEISFYINSPGGVVSAGLAI 104
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +I+ V TVC G AAS +++LAGGEKG RYA+PNAR+M++QP G+ G D++
Sbjct: 105 YDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGHRYALPNARVMVHQPSGGAQGQASDIE 164
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E +I R +++ +Y TGQ +E ++Q ERD ++SA EA FG++D ++
Sbjct: 165 IQAKEILIIRQRLNEIYREHTGQTLEDIEQKLERDSYMSAEEAQSFGIVDKVI 217
>gi|337279216|ref|YP_004618688.1| ATP-dependent Clp protease proteolytic subunit [Ramlibacter
tataouinensis TTB310]
gi|334730293|gb|AEG92669.1| candidate ATP-dependent Clp protease proteolytic subunit
(Endopeptidase Clp) [Ramlibacter tataouinensis TTB310]
Length = 202
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R++F+ P+N A ++QL+ L + + D DI Y+N PGGS+ + +AI+
Sbjct: 27 DIYSRLLRERVVFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVSAGMAIF 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+++M++QP G G D++
Sbjct: 87 DTMNFIKPDVSTLCTGMAASMGAFLLAAGTKGKRFALPNSKVMIHQPLGGMQGQATDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +R +++++ A TGQP+EK+++ TERD FLSA E+ ++GL+D ++
Sbjct: 147 HAKDILKTRAQLNKILAERTGQPLEKIERDTERDYFLSADESKDYGLVDQVI 198
>gi|168018159|ref|XP_001761614.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687298|gb|EDQ73682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 303
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 112/167 (67%)
Query: 101 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 160
LF+ RII G ++ +A ++QL+ L D D DI+MY+N PGGS+ + +AI+D M
Sbjct: 113 LFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPDRDIVMYVNSPGGSVTAGMAIFDTMRH 172
Query: 161 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 220
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 173 IRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQTDIEIQANEI 232
Query: 221 VISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ A TGQP EK+ Q T+RD F+SA EA E+GLID ++
Sbjct: 233 LHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAQEYGLIDAVI 279
>gi|410726144|ref|ZP_11364388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
sp. Maddingley MBC34-26]
gi|410601390|gb|EKQ55905.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
sp. Maddingley MBC34-26]
Length = 198
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ ++ +A ++QL+ L D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSKLLKDRIIFLGEEVSDSIANLIVAQLIFLEAEDPDKDIHLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +LAGG G R+A+ NA +M++QP G+ G D+K
Sbjct: 79 DTMNYIKCDVSTICVGMAASMGAFLLAGGANGKRFALSNAEVMIHQPSGGAKGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ ++ ++++ A TG+ IE+++ T+RD F+SA EA E+GLIDG++ E
Sbjct: 139 AAEHILKNKRNLNKILAENTGKSIEQIEVDTDRDNFMSADEAKEYGLIDGVMNRE 193
>gi|428313411|ref|YP_007124388.1| protease subunit of ATP-dependent protease [Microcoleus sp. PCC
7113]
gi|428255023|gb|AFZ20982.1| protease subunit of ATP-dependent protease [Microcoleus sp. PCC
7113]
Length = 198
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 120/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ + L+R RIIF+GQ ++ +A + I+ ++ L + D DI +Y+N PGG + + +AI
Sbjct: 21 VDIYNRLYRERIIFLGQEVDDEIANQIIAVMLYLDSEDNSKDIYLYINSPGGMVTAGMAI 80
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M IK V T+C G+AAS + +LA G+KG R A+P++RIM++QP G+ G D++
Sbjct: 81 YDTMQHIKSDVVTICVGLAASMGSFLLAAGKKGKRLALPHSRIMIHQPSGGTRGQATDIE 140
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ E + RH+++++YA TGQ +EK+++ +RD FLSA EA E+GLID ++E
Sbjct: 141 IEAREIIRIRHQLNQIYANNTGQTLEKIEKDMDRDFFLSAQEAKEYGLIDRVIE 194
>gi|427706272|ref|YP_007048649.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc sp. PCC
7107]
gi|427358777|gb|AFY41499.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc sp. PCC
7107]
Length = 232
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 124/191 (64%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L + D + DI +
Sbjct: 29 IVPTVVEQSGMGERAFDIYSRLLRERIIFLGTAIDDTVANSIVAQLLFLDSEDAEKDIQL 88
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +LA G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPNVVTICFGLAASMGAFLLAAGTAGKRMSLPDSRIMI 148
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++++ A TGQP+E+++ T+RD F+SA EA
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKGQLNQLLAHHTGQPLERLEADTDRDFFMSAEEAKN 208
Query: 260 FGLIDGILETE 270
+GLID ++ +
Sbjct: 209 YGLIDQVISRQ 219
>gi|261210563|ref|ZP_05924856.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
gi|262404275|ref|ZP_06080830.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
gi|424591588|ref|ZP_18031015.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1037(10)]
gi|260840348|gb|EEX66919.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
gi|262349307|gb|EEY98445.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
gi|408031447|gb|EKG68069.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1037(10)]
Length = 208
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++K++R+ A TGQP+E +++ T+RD F+SA +A+E+GL+D +L+
Sbjct: 152 HAQEILTIKNKLNRLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVLK 204
>gi|190150599|ref|YP_001969124.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303252091|ref|ZP_07338260.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307248303|ref|ZP_07530328.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307263943|ref|ZP_07545546.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|226706435|sp|B3H252.1|CLPP_ACTP7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189915730|gb|ACE61982.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302649073|gb|EFL79260.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306855173|gb|EFM87351.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306870705|gb|EFN02446.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 196
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++Q++ L D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G A S A +L+GG KG R+A+PNAR+M++QP G+ G D++
Sbjct: 79 DTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + + R A +GQP EKV TERD F+SA EAME+GLID +L
Sbjct: 139 QAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVL 190
>gi|428211847|ref|YP_007084991.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
acuminata PCC 6304]
gi|428000228|gb|AFY81071.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
acuminata PCC 6304]
Length = 234
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 115/173 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
DL S L R RI+F+G P++ VA ++Q++ L D + DI +Y+N PGGS+ + +AI
Sbjct: 46 FDLYSRLLRERIVFLGTPVDDNVADLIVAQMLFLDAEDPEKDIQLYINSPGGSVTAGMAI 105
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T+C+G+AAS A +L G KG R ++P++RIM++QP G+ G D++
Sbjct: 106 YDTMQQIRPDVATICYGLAASMGAFLLTAGAKGKRMSLPSSRIMIHQPLGGAQGQAVDIE 165
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++ M A TGQP+E+++ T+RD F+SA E+ +GLID ++
Sbjct: 166 IQAKEILYHKRQLNEMLAFHTGQPLERIEADTDRDFFMSAEESRAYGLIDQVI 218
>gi|392971446|ref|ZP_10336842.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
equorum subsp. equorum Mu2]
gi|403047222|ref|ZP_10902690.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus sp.
OJ82]
gi|392510838|emb|CCI60118.1| ATP-dependent Clp protease proteolytic subunit ClpP [Staphylococcus
equorum subsp. equorum Mu2]
gi|402762756|gb|EJX16850.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus sp.
OJ82]
Length = 194
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++++ A TGQ IEK+++ T+RD FLSA EA E+GL+D ++ E
Sbjct: 139 AANHILKTRAKLNQILAERTGQSIEKIEKDTDRDNFLSAEEAKEYGLVDQVMVPE 193
>gi|313892932|ref|ZP_07826509.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella sp. oral taxon 158 str. F0412]
gi|313442285|gb|EFR60700.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella sp. oral taxon 158 str. F0412]
Length = 197
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG RYA+P+AR+M++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARVMIHQPLGGVQGQASEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + R +++ + A+ +GQ IE V + T+RD F+SA +A+E+GLID +L E
Sbjct: 138 HAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEYGLIDEVLTRE 192
>gi|238018907|ref|ZP_04599333.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
gi|237864391|gb|EEP65681.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
Length = 197
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG RYA+P+AR+M++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRYALPHARVMIHQPLGGVQGQASEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + R +++ + A+ +GQ IE V + T+RD F+SA +A+E+GLID +L E
Sbjct: 138 HAREILRMREELNGILASRSGQDIEVVARDTDRDNFMSAQDAVEYGLIDEVLTRE 192
>gi|167766384|ref|ZP_02438437.1| hypothetical protein CLOSS21_00888 [Clostridium sp. SS2/1]
gi|317496812|ref|ZP_07955142.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
gi|429763602|ref|ZP_19295949.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaerostipes hadrus DSM 3319]
gi|167711975|gb|EDS22554.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium sp. SS2/1]
gi|291559217|emb|CBL38017.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[butyrate-producing bacterium SSC/2]
gi|316895824|gb|EFV17976.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
gi|429178111|gb|EKY19395.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaerostipes hadrus DSM 3319]
Length = 193
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A +SQL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVTAGLVVSQLLFLESEDPDKDINLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G+AAS A +L+GG KG R A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYVKCDVSTMCMGMAASMGAFLLSGGTKGKRLALPNAEIMIHQPSGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++ + + TGQP E + + TERD +L+A EA+E+GLID ++E
Sbjct: 139 AAEHILRTKKKLNTILSENTGQPYETIVKDTERDNWLTAQEALEYGLIDKVME 191
>gi|428779425|ref|YP_007171211.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dactylococcopsis salina PCC 8305]
gi|428693704|gb|AFZ49854.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dactylococcopsis salina PCC 8305]
Length = 199
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ ++ + ++Q++ L D + DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIIFLGQQVDDEIGNLIVAQMLYLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L I+D M+ ++P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQVRPDVSTICLGLAASMGAFLLSAGAKGKRLSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + TGQP+E++++ TERD F+S E+ME
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQQLNHYLSEHTGQPLERIEEDTERDFFMSPQESME 180
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 181 YGLIDRVIE 189
>gi|414343400|ref|YP_006984921.1| protein ClpP [Gluconobacter oxydans H24]
gi|411028735|gb|AFW01990.1| ClpP [Gluconobacter oxydans H24]
gi|453331358|dbj|GAC86937.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
thailandicus NBRC 3255]
Length = 214
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 122/191 (63%), Gaps = 4/191 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ T G D+ S L + RIIF+ P+ VA +QL+ L +++ +
Sbjct: 13 NNSLVPMVVEQTARGERAFDIFSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPTKE 72
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGG + + LAIYD M +I+ V TVC G AAS +++LAGGEKG RY +PNAR
Sbjct: 73 ISFYINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGHRYCLPNAR 132
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
+M++QP G+ G D++ Q E ++ R +++ +Y TGQ +E++++ ERD +LSA E
Sbjct: 133 VMVHQPSGGAQGQASDIEIQAREILLIRQRLNEIYREHTGQTLEEIERKLERDSYLSAEE 192
Query: 257 AMEFGLIDGIL 267
A EFGLID ++
Sbjct: 193 AKEFGLIDAVV 203
>gi|148381180|ref|YP_001255721.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A str. ATCC 3502]
gi|153933152|ref|YP_001385555.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A str. ATCC 19397]
gi|153934525|ref|YP_001388961.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A str. Hall]
gi|153939192|ref|YP_001392582.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum F str. Langeland]
gi|168179119|ref|ZP_02613783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum NCTC 2916]
gi|168183548|ref|ZP_02618212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum Bf]
gi|170754567|ref|YP_001782870.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum B1 str. Okra]
gi|226950659|ref|YP_002805750.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A2 str. Kyoto]
gi|237796687|ref|YP_002864239.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum Ba4 str. 657]
gi|384463549|ref|YP_005676144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum F str. 230613]
gi|387819501|ref|YP_005679848.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum H04402 065]
gi|421839011|ref|ZP_16272698.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum CFSAN001627]
gi|429247534|ref|ZP_19210776.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum CFSAN001628]
gi|166201814|sp|A7FYI2.1|CLPP_CLOB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201815|sp|A5I6W1.1|CLPP_CLOBH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201816|sp|A7GIH2.1|CLPP_CLOBL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706445|sp|B1IND7.1|CLPP_CLOBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763786|sp|C1FLA6.1|CLPP_CLOBJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|148290664|emb|CAL84793.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A str. ATCC 3502]
gi|152929196|gb|ABS34696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum A str. ATCC 19397]
gi|152930439|gb|ABS35938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum A str. Hall]
gi|152935088|gb|ABS40586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum F str. Langeland]
gi|169119779|gb|ACA43615.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum B1 str. Okra]
gi|182670165|gb|EDT82141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum NCTC 2916]
gi|182673367|gb|EDT85328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum Bf]
gi|226842960|gb|ACO85626.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum A2 str. Kyoto]
gi|229261301|gb|ACQ52334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum Ba4 str. 657]
gi|295320566|gb|ADG00944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum F str. 230613]
gi|322807545|emb|CBZ05120.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum H04402 065]
gi|409736336|gb|EKN37768.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum CFSAN001627]
gi|428755428|gb|EKX78057.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum CFSAN001628]
Length = 194
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + + +N A ++QL+ L D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ + K++ + + TG+P+E+V+ TERD FLSA EA E+GLID +++ +
Sbjct: 139 HAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYGLIDEVIDKK 193
>gi|210615408|ref|ZP_03290535.1| hypothetical protein CLONEX_02751 [Clostridium nexile DSM 1787]
gi|210150257|gb|EEA81266.1| hypothetical protein CLONEX_02751 [Clostridium nexile DSM 1787]
Length = 193
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ + A I+QL+ L D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLGEEVTDASASVIIAQLLFLEGEDPEKDIHLYINSPGGSVSAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS + +L+GG+KG RYA+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTICIGMAASMGSFLLSGGKKGKRYALPNAEIMIHQPLGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++ + A TGQ +EK+Q TERD F+SA EA E+GL+D ++
Sbjct: 139 AAEHILKTRQKLNTILAENTGQSLEKIQADTERDNFMSAQEAKEYGLVDEVI 190
>gi|253681101|ref|ZP_04861904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum D str. 1873]
gi|331270305|ref|YP_004396797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum BKT015925]
gi|416350488|ref|ZP_11680890.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum C str. Stockholm]
gi|253562950|gb|EES92396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum D str. 1873]
gi|329126855|gb|AEB76800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum BKT015925]
gi|338196268|gb|EGO88472.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum C str. Stockholm]
Length = 195
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
N + + K++++ + TG+P+E +++ ERD F+ A EA E+GLID ++
Sbjct: 139 HANRILKIKDKLNKILSERTGKPLEVIKKDVERDNFMEADEAKEYGLIDDVI 190
>gi|88808603|ref|ZP_01124113.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 7805]
gi|88787591|gb|EAR18748.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 7805]
Length = 196
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSESANRIVAQLLFLEAEDPEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + ++++++ A T QP+EK+Q+ T+RD F+S EA +
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKNRLNQELAERTSQPLEKIQEDTDRDFFMSPHEAAD 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDSVID 189
>gi|329908483|ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
bacterium IMCC9480]
gi|327546710|gb|EGF31661.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
bacterium IMCC9480]
Length = 206
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 119/174 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N VA ++QL+ L + + D DI +Y+N PGGS+ + +AI+
Sbjct: 31 DIYSRLLKERVIFLVGPVNDGVANLIVAQLLFLESENPDKDISLYINSPGGSVSAGMAIF 90
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+++PN+RIM++QP G+ G D++
Sbjct: 91 DTMQFIKPNVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPSGGAQGQATDIEI 150
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ + A TG+ IE++++ TERD F+SA EA ++G+ID +L T
Sbjct: 151 QAKEILYLRERLNGILADKTGRTIEEIRRDTERDNFMSADEAEKYGMIDKVLTT 204
>gi|260887080|ref|ZP_05898343.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|330839143|ref|YP_004413723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|402833991|ref|ZP_10882598.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. CM52]
gi|260863142|gb|EEX77642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|329746907|gb|AEC00264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|402279060|gb|EJU28103.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. CM52]
Length = 206
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 24 DIYSRLLKDRIVFVGGPIDDNVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G AAS +++L G KG RYA+P ARIM++QP G+ G D++
Sbjct: 84 DTMQYIRPDVSTICIGQAASMGSLLLTAGAKGKRYALPLARIMIHQPLGGAQGQSTDIQI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQP EK+ TERD F++A EA E+GLID ++
Sbjct: 144 QAKEILRLREVGNDILAKHTGQPREKLIADTERDNFMTAEEAKEYGLIDEVI 195
>gi|237653230|ref|YP_002889544.1| ATP-dependent Clp protease proteolytic subunit [Thauera sp. MZ1T]
gi|237624477|gb|ACR01167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thauera sp.
MZ1T]
Length = 212
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ P+N + A ++QL+ L + + D DI
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENPDKDIYF 78
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G AAS A +LA GEKG R+ +PN+R+M+
Sbjct: 79 YINSPGGSVTAGMAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFILPNSRVMI 138
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + R +++ M + TGQ +E++++ T+RD F+SA A+E
Sbjct: 139 HQPLGGFQGQASDIEIHAREILYLRSRLNDMLSKHTGQALERIEKDTDRDNFMSATAAVE 198
Query: 260 FGLIDGIL 267
+GL+D +L
Sbjct: 199 YGLVDKVL 206
>gi|206973614|ref|ZP_03234532.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus H3081.97]
gi|206747770|gb|EDZ59159.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus H3081.97]
Length = 193
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G+AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIKPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQPIEK+ TERD F++A EA E+G++DG++E +
Sbjct: 139 TAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEAKEYGIVDGVVEKK 193
>gi|258542726|ref|YP_003188159.1| ATP-dependent Clp protease proteolytic subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|384042647|ref|YP_005481391.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-12]
gi|384051164|ref|YP_005478227.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-03]
gi|384054272|ref|YP_005487366.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-07]
gi|384057506|ref|YP_005490173.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-22]
gi|384060147|ref|YP_005499275.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-26]
gi|384063439|ref|YP_005484081.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-32]
gi|384119449|ref|YP_005502073.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256633804|dbj|BAH99779.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01]
gi|256636863|dbj|BAI02832.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-03]
gi|256639916|dbj|BAI05878.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-07]
gi|256642972|dbj|BAI08927.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-22]
gi|256646027|dbj|BAI11975.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-26]
gi|256649080|dbj|BAI15021.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-32]
gi|256652067|dbj|BAI18001.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655124|dbj|BAI21051.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-12]
Length = 220
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 127/204 (62%), Gaps = 11/204 (5%)
Query: 75 ISGKNDNPP-------LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAIS 123
+SG D P L+P V+ T G D+ S L + RIIF+ P+ VA +
Sbjct: 1 MSGMRDRDPVEIFSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISA 60
Query: 124 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 183
QL+ L +++ + +I Y+N PGG + + LAIYD M +I+ V TVC G AAS +++LAG
Sbjct: 61 QLLYLESVNPNKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAG 120
Query: 184 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243
GEKG R+A+PNAR+M++QP G+ G D++ Q E +I R K++ +Y TG+ +E+++
Sbjct: 121 GEKGRRFALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQKLNEIYREHTGRTLEEIE 180
Query: 244 QYTERDRFLSAAEAMEFGLIDGIL 267
Q ERD ++SA EA FG++D ++
Sbjct: 181 QKLERDTYMSAQEAQSFGIVDEVI 204
>gi|355576430|ref|ZP_09045685.1| ATP-dependent Clp protease proteolytic subunit [Olsenella sp. oral
taxon 809 str. F0356]
gi|354816667|gb|EHF01182.1| ATP-dependent Clp protease proteolytic subunit [Olsenella sp. oral
taxon 809 str. F0356]
Length = 204
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 124/191 (64%), Gaps = 4/191 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N PL+P V+ TP G D+ S L +RI+F+G+ + A I+QL+ L + D D D
Sbjct: 6 NIPLIPYVVEQTPRGERSYDIYSRLLNDRIVFLGEEVTRDSANLVIAQLLHLESQDPDKD 65
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y++ PGG +Y+ L I D M++IKP V T+C G+AAS A++L+ G KG R A+PN+
Sbjct: 66 ISLYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMGAVLLSAGAKGKRMALPNSM 125
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
++++QP SG+ G D++ +E R++++ + + TGQPIEK+ TERD ++ A E
Sbjct: 126 VLIHQPSSGAQGQQTDIQIAADETRWIRNRLNEILSQNTGQPIEKINADTERDNYMRAEE 185
Query: 257 AMEFGLIDGIL 267
A E+GL+D ++
Sbjct: 186 AREYGLVDKVI 196
>gi|302874445|ref|YP_003843078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
cellulovorans 743B]
gi|307690948|ref|ZP_07633394.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
cellulovorans 743B]
gi|302577302|gb|ADL51314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
cellulovorans 743B]
Length = 194
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIVFLGEEVNDASASVVVAQLLFLESEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMNYIKPDVATICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGFKGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ + K++ + + TGQP+E +++ TERD F++A +A ++GLID ++
Sbjct: 139 HAERILLMKKKLNSILSERTGQPLEVIEKDTERDNFMTADKAKDYGLIDEVI 190
>gi|410943166|ref|ZP_11374907.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
frateurii NBRC 101659]
Length = 214
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 122/191 (63%), Gaps = 4/191 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ T G D+ S L + RIIF+ P+ VA +QL+ L +++ +
Sbjct: 13 NNSLVPMVVEQTARGERAFDIFSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPTKE 72
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGG + + LAIYD M +I+ V TVC G AAS +++LAGGEKG RY +PNAR
Sbjct: 73 ISFYINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGHRYCLPNAR 132
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
+M++QP G+ G D++ Q E ++ R +++ +Y TGQ +E++++ ERD +LSA E
Sbjct: 133 VMVHQPSGGAQGQASDIEIQAREILLIRQRLNEIYREHTGQTLEEIERKLERDSYLSAEE 192
Query: 257 AMEFGLIDGIL 267
A EFGLID ++
Sbjct: 193 AKEFGLIDAVV 203
>gi|229173439|ref|ZP_04300983.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
MM3]
gi|228610133|gb|EEK67411.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
MM3]
Length = 198
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 24 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G+AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 84 DTMNLIKPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQPIEK+ TERD F++A EA E+G++DG++E +
Sbjct: 144 TAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEAKEYGIVDGVVEKK 198
>gi|434391262|ref|YP_007126209.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
gi|428263103|gb|AFZ29049.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
Length = 230
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 6/208 (2%)
Query: 67 STEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAI 122
++ HS +I S N ++P V+ G D+ S L R RIIF+G ++ VA +
Sbjct: 12 TSSHSLEINSLGASN--IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTQVDDTVADSIV 69
Query: 123 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 182
+QL+ L D + DI +Y+N PGGS+ + +AIYD M I+ V T+CFG+AAS A +LA
Sbjct: 70 AQLLFLDAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQIRCDVATICFGLAASMGAFLLA 129
Query: 183 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV 242
G G R ++PN+RIM++QP G+ G D++ Q E + + K++ + A TG+P+E++
Sbjct: 130 AGAHGKRMSLPNSRIMIHQPLGGAQGQAVDIEIQAKEILYLKRKLNEILAYHTGKPLERI 189
Query: 243 QQYTERDRFLSAAEAMEFGLIDGILETE 270
+ TERD F+SA EA +GLID ++ +
Sbjct: 190 EADTERDFFMSAEEAKNYGLIDQVISKQ 217
>gi|403385525|ref|ZP_10927582.1| ATP-dependent Clp protease proteolytic subunit [Kurthia sp. JC30]
Length = 201
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANAIVSQLLFLEAEDPEKDIYLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS + +L G+KG R+A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVQTICIGMAASMGSFLLTAGKKGKRFALPNAEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++R+ + TGQPIE +++ T+RD ++SA A+E+G+ID I+
Sbjct: 139 AAKHILKTREKLNRILSERTGQPIEIIEKDTDRDNYMSAERALEYGIIDKIM 190
>gi|421849601|ref|ZP_16282579.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus
NBRC 101655]
gi|421853139|ref|ZP_16285818.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371459662|dbj|GAB27782.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus
NBRC 101655]
gi|371478599|dbj|GAB31021.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 201
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 115/173 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ P+ VA +QL+ L +++ + +I Y+N PGG + + LAI
Sbjct: 13 FDIYSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPNKEISFYINSPGGVVSAGLAI 72
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +I+ V TVC G AAS +++LAGGEKG R+A+PNAR+M++QP G+ G D++
Sbjct: 73 YDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNARVMVHQPSGGAQGQASDIE 132
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E +I R K++ +Y TG+ +E+++Q ERD ++SA EA FG++D ++
Sbjct: 133 IQAREILIIRQKLNEIYREHTGRTLEEIEQKLERDTYMSAQEAQSFGIVDEVI 185
>gi|357031709|ref|ZP_09093652.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
morbifer G707]
gi|356414939|gb|EHH68583.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
morbifer G707]
Length = 204
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ P+ V+ +QL+ L +++ +I Y+N PGG + + LAI
Sbjct: 21 FDIYSRLLQERIIFLTGPVYDQVSSLICAQLLYLESVNPTKEISFYINSPGGVVSAGLAI 80
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +I+ V TVC G AAS +++LAGGEK RYA+PNAR+M++QP G+ G D++
Sbjct: 81 YDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKNHRYALPNARVMVHQPSGGAQGQASDIE 140
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E +I R +++ +Y TGQ +E++++ ERD +LSA EA EFGLID ++
Sbjct: 141 IQAREILIIRQRLNEIYREHTGQTLEQIERKLERDSYLSAEEAKEFGLIDEVV 193
>gi|33865835|ref|NP_897394.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8102]
gi|67460510|sp|Q7U6N7.1|CLPP2_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|33633005|emb|CAE07816.1| ATP-dependent Clp protease proteolytic subunit 1 [Synechococcus sp.
WH 8102]
Length = 197
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + ++++ + TGQP++++QQ T+RD F+S EA+E
Sbjct: 121 HQPLGGARGQASDIRIQADEILYLKERLNQELSDRTGQPLDRIQQDTDRDFFMSPGEAVE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDSVID 189
>gi|298714280|emb|CBJ27396.1| chloroplast clp protease P [Ectocarpus siliculosus]
Length = 264
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 120/186 (64%)
Query: 85 MPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCP 144
MP V +D+ S L ++RI+ +GQ +N V ++QL+ LA D + DI +Y+N P
Sbjct: 66 MPTVGEGSEQMDVMSRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSP 125
Query: 145 GGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 204
GGS+ + LAIYD M +I V TVCFG+AAS A +L G G R ++PN+RIM++QP
Sbjct: 126 GGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSAGKRKSLPNSRIMIHQPLG 185
Query: 205 GSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLID 264
G+ G D++ Q E + ++ ++ + +T QP +K+++ T+RD F++ EAME+GLID
Sbjct: 186 GAAGQAADIEIQAKEILFTKRLLNGYMSEYTDQPADKIEEDTDRDFFMTPIEAMEYGLID 245
Query: 265 GILETE 270
+++T+
Sbjct: 246 EVIKTK 251
>gi|336436530|ref|ZP_08616242.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336007395|gb|EGN37420.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 193
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ + + A ++QL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSANIIVAQLLFLEADDPNKDIQLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V TVC G+AAS + +L+GG KG R+A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGSFLLSGGAKGKRFALPNAEIMIHQPSGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++ + AA TGQP+E +Q+ TERD F+SA +A E+GLID ++
Sbjct: 139 AAEHILKIRKKLNEILAANTGQPLEVIQRDTERDNFMSAQQAKEYGLIDEVI 190
>gi|344943167|ref|ZP_08782454.1| ATP-dependent Clp protease proteolytic subunit [Methylobacter
tundripaludum SV96]
gi|344260454|gb|EGW20726.1| ATP-dependent Clp protease proteolytic subunit [Methylobacter
tundripaludum SV96]
Length = 215
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 115/173 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + R+IF+ + A ++QL+ L + + D DI +Y+N PGGS+ + ++I
Sbjct: 34 FDIYSRLLKERVIFLVGQVEDYSANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSI 93
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V T+C G AAS A++LAGG KG RY +P++R+M++QP G G D+
Sbjct: 94 YDTMQFIKPDVSTMCIGQAASMGALLLAGGAKGKRYCLPHSRMMIHQPLGGYQGQASDID 153
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E ++ R K++++ + TGQP+EKVQQ T+RD FLSA +A+ +GLID +L
Sbjct: 154 IHAREILLIREKLNKILSDHTGQPMEKVQQDTDRDNFLSANDAVSYGLIDQVL 206
>gi|357052921|ref|ZP_09114025.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
clostridioforme 2_1_49FAA]
gi|355386346|gb|EHG33386.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
clostridioforme 2_1_49FAA]
Length = 193
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ ++ + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVSDVSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +L+GG KG R+A+PNA IM++QP G+ G ++K
Sbjct: 79 DTMNYIKCDVSTICIGMAASMGAFLLSGGAKGKRFALPNAEIMIHQPSGGAKGQATEIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++ + AA TG+P+E +++ TERD ++SA EA E+GLID I+
Sbjct: 139 VAENILKTRKKLNEILAANTGKPLEVIERDTERDNYMSALEAKEYGLIDEII 190
>gi|159903385|ref|YP_001550729.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9211]
gi|159888561|gb|ABX08775.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9211]
Length = 196
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 119/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ + A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTNDSANRIVAQLLFLEAEDPEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D + +KP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTIEHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLKHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + +++ A TGQPIE++ Q T+RD ++S EA+E
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKDRLNNELAERTGQPIERISQDTDRDFYMSPDEALE 180
Query: 260 FGLIDGIL 267
+G+ID I
Sbjct: 181 YGIIDNIF 188
>gi|257093849|ref|YP_003167490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046373|gb|ACV35561.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 209
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 121/202 (59%), Gaps = 7/202 (3%)
Query: 73 KIISGKNDNPP---LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQL 125
I N NP L+P V+ G D+ S L + R++F+ P+N + A ++QL
Sbjct: 2 HIEHASNWNPQALGLVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLVVAQL 61
Query: 126 VTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 185
+ L + D DI Y+N PGGS+ + L++YD M +IKP V T+C G A S A +LA G
Sbjct: 62 LFLEAENPDKDIHFYINSPGGSVSAGLSVYDTMQFIKPDVSTLCMGQACSMGAFLLAAGT 121
Query: 186 KGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQY 245
+G R+A+PN+R+M++QP G G D+ E + R K++ + A TGQ IE++++
Sbjct: 122 RGKRFALPNSRVMIHQPMGGFQGQASDIAIHAKEILSLRAKLNELMALHTGQEIERIERD 181
Query: 246 TERDRFLSAAEAMEFGLIDGIL 267
T+RD FLSA EA E+GLID +L
Sbjct: 182 TDRDNFLSAQEAAEYGLIDKVL 203
>gi|119357822|ref|YP_912466.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
phaeobacteroides DSM 266]
gi|166201813|sp|A1BI15.1|CLPP_CHLPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119355171|gb|ABL66042.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
phaeobacteroides DSM 266]
Length = 227
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 131/212 (61%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISG---KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHARKLYSGAIEQGITGSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R ++ + A+ TG
Sbjct: 125 GAFLLASGTKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ +++V++ +ERDR+++A EA+E+G+ID I E
Sbjct: 185 KDVQQVREDSERDRWMNAQEALEYGIIDQIFE 216
>gi|336311088|ref|ZP_08566055.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
HN-41]
gi|335865304|gb|EGM70330.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
HN-41]
Length = 202
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 27 DIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + ++K++ M A TGQP+E +++ T+RD F+SA +A+++GL+D ++
Sbjct: 147 HAQEIIGIKNKLNLMLAEHTGQPLEVIERDTDRDNFMSATQAVDYGLVDAVM 198
>gi|366162940|ref|ZP_09462695.1| ATP-dependent Clp protease proteolytic subunit [Acetivibrio
cellulolyticus CD2]
Length = 194
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + +N + A ++Q++ L D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIFSRLLKDRIILLSDEVNDVTASLVVAQMLFLEAEDPDKDIQLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G ++K
Sbjct: 79 DTMQYVKPDVSTICIGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGTRGQATEIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ +R +++R+ + TGQP+EK++ TERD F+SA EA +GL+D ++E
Sbjct: 139 HAEHILKTRDRLNRILSEKTGQPLEKIEADTERDFFMSAEEAKAYGLVDDVME 191
>gi|152980689|ref|YP_001353221.1| ATP-dependent Clp protease proteolytic subunit [Janthinobacterium
sp. Marseille]
gi|226706516|sp|A6SY74.1|CLPP_JANMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|151280766|gb|ABR89176.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium
sp. Marseille]
Length = 210
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 118/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +Y+N PGGS+ + +AIY
Sbjct: 35 DIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKDISLYINSPGGSVSAGMAIY 94
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA GEKG R+++PN+RIM++QP G+ G D++
Sbjct: 95 DTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQGQASDIEI 154
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ + A TG+ +E++ + T+RD F+SA A+ +G+ID +L T
Sbjct: 155 QAREILYLRERLNAILAERTGKSVEEIAKDTDRDNFMSADAAVTYGMIDKVLAT 208
>gi|358062799|ref|ZP_09149437.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
hathewayi WAL-18680]
gi|356698982|gb|EHI60504.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
hathewayi WAL-18680]
Length = 193
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ + + A ++QL+ L + D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSASLVVAQLLFLESEDPSKDINLYINSPGGSVSAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V TVC G+AAS A +LAGG KG R+A+PNA IM++QP G+ G +++
Sbjct: 79 DTMNYIKCDVSTVCMGMAASMGAFLLAGGTKGKRFALPNADIMIHQPSGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ K++ + AA TGQPIE +++ T+RD +++A EA +GLID ++
Sbjct: 139 VAEKILATKKKLNEILAANTGQPIEVIERDTDRDNYMTAEEAKAYGLIDAVI 190
>gi|25019682|gb|AAN71768.1| ClpP2 [Synechococcus elongatus PCC 7942]
Length = 302
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 140/241 (58%), Gaps = 10/241 (4%)
Query: 31 SRSIVSALPSPYGDSSSGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMT 90
S ++ +PS S + L I +R L +D + + + I+G ++P V+
Sbjct: 52 SLPLLYPVPSSMFSSHASLPIHSRRLAAGLDSR---WQQPQIQAIAGSQ---AIVPTVVE 105
Query: 91 PGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG 146
G D+ S L R RI+F+G ++ VA ++QL+ L D + DI +Y+N PGG
Sbjct: 106 QSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGG 165
Query: 147 SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 206
S+ + +AIYD M + P V T+CFG+AAS A +L+GG +G R A+P+ARIM++QP G+
Sbjct: 166 SVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGA 225
Query: 207 GGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGI 266
G D++ Q E + + ++ + A TGQP+EK++ T+RD F+S EA +GLID +
Sbjct: 226 QGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQV 285
Query: 267 L 267
L
Sbjct: 286 L 286
>gi|152989915|ref|YP_001355637.1| ATP-dependent Clp protease proteolytic subunit [Nitratiruptor sp.
SB155-2]
gi|166201830|sp|A6Q1C1.1|CLPP_NITSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|151421776|dbj|BAF69280.1| ATP-dependent Clp protease, proteolytic subunit [Nitratiruptor sp.
SB155-2]
Length = 196
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN VA ++QL+ L D D DI +Y+N PGG I S ++IY
Sbjct: 20 DIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G AAS A +L+ G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGAQGQATDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + ++ + A TGQ ++K+ + TERD F+S+ EA E+GLID +LE
Sbjct: 140 QAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSEEAKEYGLIDQVLE 192
>gi|334128684|ref|ZP_08502565.1| ATP-dependent Clp protease, protease subunit [Centipeda periodontii
DSM 2778]
gi|333386421|gb|EGK57635.1| ATP-dependent Clp protease, protease subunit [Centipeda periodontii
DSM 2778]
Length = 203
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G G RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ EK+ TERD F+SA EA E+GLID ++
Sbjct: 140 QAKEILRLREVGNNILARHTGQDPEKINVDTERDNFMSAEEAKEYGLIDEVV 191
>gi|428225971|ref|YP_007110068.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geitlerinema
sp. PCC 7407]
gi|427985872|gb|AFY67016.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geitlerinema
sp. PCC 7407]
Length = 200
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + RIIF+GQP++S +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSKLLQERIIFLGQPVDSDLANLIVAQLLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ +KP V T+C G+AAS A +LA G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGMGIFDTMNHVKPDVCTICLGLAASMGAFLLAAGAKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A TGQP+++++ T+RD F+SA EA
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYIKRRLNEILAERTGQPLDRIETDTDRDFFMSAEEART 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|311743054|ref|ZP_07716862.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
marinum DSM 15272]
gi|311313734|gb|EFQ83643.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
marinum DSM 15272]
Length = 200
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D + LF +RIIF+G PI+ VA I+QL+ L ++ D DI +Y+N PGGS ++ AI
Sbjct: 19 IDPYAKLFEDRIIFLGTPISDDVANAVIAQLLCLQVMEPDRDISIYINSPGGSFTAMTAI 78
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS-GSGGHVEDV 213
YD M ++KP V T C G AAS AA++L G G R+A+PNARI+++QP + G+GG + D+
Sbjct: 79 YDTMRYLKPDVQTFCLGQAASAAAVLLGAGTPGKRFALPNARILIHQPYTEGTGGQISDL 138
Query: 214 KRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ Q NE + R +++M + TG+ E V + +RD+ L+A +A+E+GLID +L+T
Sbjct: 139 EIQANEIMRMRSLMEQMISTSTGRSPEDVSRDVDRDKILTAQQALEYGLIDQVLDT 194
>gi|296134054|ref|YP_003641301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
potens JR]
gi|296032632|gb|ADG83400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
potens JR]
Length = 194
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG PI+ MVA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 19 DIYSRLLKDRIIFIGGPIDDMVANLVIAQMLFLEAEDPDKDIHIYINSPGGVVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS + +LA G KG RYA+P RIM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICMGQAASMGSFLLAAGTKGKRYALPYTRIMIHQPLGGVQGQATDIDI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ + A TGQP+E + + TERD F+SA EA ++G++D ++
Sbjct: 139 HAKEILRMKSVLNELLAKHTGQPVEVIARDTERDFFMSAEEARKYGIVDEVI 190
>gi|333977877|ref|YP_004515822.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333821358|gb|AEG14021.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 197
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG PI+ VA I+Q++ L D + DI Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHFYINSPGGVVTAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS + +LA G KG RYA+P ARIML+QP G G +++
Sbjct: 80 DTMQYIKPDVSTICLGQAASMGSFLLAAGAKGKRYALPYARIMLHQPLGGVQGQATEIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ + A TGQP EK+ + T+RD F+SA EA E+G+ID +L
Sbjct: 140 HAREILRIKDILNELLAKHTGQPREKIARDTDRDFFMSAEEAKEYGIIDEVL 191
>gi|323703643|ref|ZP_08115286.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum nigrificans DSM 574]
gi|333922902|ref|YP_004496482.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323531415|gb|EGB21311.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum nigrificans DSM 574]
gi|333748463|gb|AEF93570.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 195
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG PI+ +A I+Q + L D + DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS + +LA G KG RYA+P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPAVSTICLGQAASMGSFLLAAGAKGKRYALPQARIMIHQPLGGVQGQATDIDI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R ++ + TGQP+EK+ + TERD F+SA EA ++G+ID ++
Sbjct: 140 HAREILRMREILNERLSHHTGQPLEKIARDTERDFFMSAEEAKKYGIIDEVM 191
>gi|113867496|ref|YP_725985.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
H16]
gi|194289504|ref|YP_002005411.1| ATP-dependent clp protease proteolytic subunit [Cupriavidus
taiwanensis LMG 19424]
gi|339325652|ref|YP_004685345.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
N-1]
gi|123033071|sp|Q0KBK4.1|CLPP_RALEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706449|sp|B3R4W1.1|CLPP_CUPTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113526272|emb|CAJ92617.1| Endopeptidase Clp (type 1) [Ralstonia eutropha H16]
gi|193223339|emb|CAQ69344.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Cupriavidus taiwanensis LMG 19424]
gi|338165809|gb|AEI76864.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
N-1]
Length = 216
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D D+ +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + + TGQP+EK+ + T+RD F+S +A++
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQAVD 204
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 205 YGLIDKVL 212
>gi|389774765|ref|ZP_10192884.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter
spathiphylli B39]
gi|388438364|gb|EIL95119.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter
spathiphylli B39]
Length = 209
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ +N VA ++Q++ L + + D DI Y+N PGG++ + LAIY
Sbjct: 27 DIYSRLLKERVIFLVGEVNDQVANLIVAQMLFLESENPDKDINFYINSPGGAVTAGLAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G A S + +L G KG R+A+PN+RIM++QP G+ G D++
Sbjct: 87 DTMQFIKPNVSTMCIGQACSMGSFLLMAGAKGKRFALPNSRIMIHQPSGGAQGQATDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R +++++Y TGQP+EK++ ERDRF++A +A +GLID +L+
Sbjct: 147 QAREILYIRERLNKLYVEHTGQPLEKIELDMERDRFMNAVDAKAYGLIDEVLD 199
>gi|254469734|ref|ZP_05083139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
sp. JE062]
gi|374331792|ref|YP_005081976.1| ATP-dependent Clp protease proteolytic subunit [Pseudovibrio sp.
FO-BEG1]
gi|211961569|gb|EEA96764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
sp. JE062]
gi|359344580|gb|AEV37954.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Pseudovibrio sp. FO-BEG1]
Length = 211
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+ +A SQL+ L + + +I +Y+N PGG + S LAIY
Sbjct: 28 DIFSRLLKERIIFLTGPVEDTMATLVCSQLLYLEAENPNKEIALYINSPGGVVTSGLAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+PK+ T+C G AAS +++LA GEKGMR+++PN+R+M++QP G G D+
Sbjct: 88 DTMQFIRPKISTLCIGQAASMGSLLLAAGEKGMRFSLPNSRVMVHQPSGGFRGQAADIML 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + + +++ +Y + TGQ +E V++ ERD F+SA A EFGLID ++E
Sbjct: 148 HAQEILKLKRRLNEIYVSHTGQTLEAVEEALERDNFMSADAAKEFGLIDNVIE 200
>gi|119713091|gb|ABL97160.1| ATP-dependent Clp protease proteolytic subunit [uncultured marine
bacterium EB0_49D07]
Length = 204
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 125/192 (65%), Gaps = 4/192 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ TP G D+ S L + RIIF+ PI+ ++ ++QL+ L + + + D
Sbjct: 5 NSGLVPMVVEQTPRGERAFDIYSRLLKERIIFLTGPIDDYISNLVVAQLLFLESENPEKD 64
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGG I S LAIYD M +I P+V T+C G AAS +++LAGG +G R+A+ N+R
Sbjct: 65 ISIYINSPGGVITSGLAIYDTMQFIAPEVSTLCIGQAASMGSLLLAGGAEGKRFALTNSR 124
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
IM++QP G G D + E ++ + K++ + + TG+ ++KV+Q T+RD FL+A E
Sbjct: 125 IMIHQPLGGFSGQASDFEIHAKEMLLVKQKVNEILSKHTGKTLKKVEQDTDRDNFLNATE 184
Query: 257 AMEFGLIDGILE 268
A+ +G+ID ILE
Sbjct: 185 AVTYGIIDEILE 196
>gi|451812100|ref|YP_007448554.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778002|gb|AGF48950.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 211
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 121/187 (64%), Gaps = 4/187 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L + RI+F+ P+ A I+QL+ L + D DI +Y
Sbjct: 19 VPTVIEQSGRSERAYDIYSRLLKERIVFLSGPVTDYSANLVIAQLLFLESDDPSKDIFLY 78
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+Y+ +AI+D M+++KP + T+C G+AAS A +LA G KG R+++PNA +M++
Sbjct: 79 INSPGGSVYAGMAIFDTMNFVKPDISTMCVGIAASMGAFLLASGTKGKRFSLPNACMMIH 138
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G D++ E + R++++++ A TGQ +EK+ T+RD F+SA++A+ +
Sbjct: 139 QPSGGAQGQASDIQIHAEEILRLRNRLNKILAENTGQNMEKISNDTDRDNFMSASDALNY 198
Query: 261 GLIDGIL 267
GLID IL
Sbjct: 199 GLIDKIL 205
>gi|437999901|ref|YP_007183634.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451812827|ref|YP_007449280.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339135|gb|AFZ83557.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451778796|gb|AGF49676.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 210
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L + RI+F+ P+ A I+QL+ L + D DI +Y
Sbjct: 19 VPTVIEKSGRSERAYDIYSRLLKERIVFLSGPVTDHSANLVIAQLLFLESDDPSKDISLY 78
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+Y+ +AI+D M++IKP V T+C G+AAS A +LA G KG R+++PNA +M++
Sbjct: 79 INSPGGSVYAGMAIFDTMNFIKPHVSTMCIGIAASMGAFLLAAGTKGKRFSLPNACMMIH 138
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G D++ E + R++++++ A TGQ +EK+ T+RD F+SA +A+ +
Sbjct: 139 QPSGGAQGQASDIQIHAEEILRLRNRLNKILADNTGQTMEKISSDTDRDNFMSANDALNY 198
Query: 261 GLIDGIL 267
GLID IL
Sbjct: 199 GLIDKIL 205
>gi|341616021|ref|ZP_08702890.1| ATP-dependent Clp protease proteolytic subunit [Citromicrobium sp.
JLT1363]
Length = 228
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 115/175 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+FI P+ +A A++QL+ L + + I MY+N PGG + + +AI
Sbjct: 32 FDIFSRLLRERIVFITGPVEDGMASLAVAQLLFLESENPSKPISMYINSPGGVVTAGMAI 91
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P++ TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 92 HDTMQYIRPRISTVCVGQAASMGSFLLAAGEPGMRIALPNARIMVHQPSGGAQGMASDIE 151
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R ++ +YA +TG+ + ++++ +RD FL A EAM+FG++D + ET
Sbjct: 152 IQAREILRIRKNMNELYAKYTGKELSEIEEAMDRDTFLDAKEAMKFGIVDKVFET 206
>gi|332529294|ref|ZP_08405256.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hylemonella
gracilis ATCC 19624]
gi|332041211|gb|EGI77575.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hylemonella
gracilis ATCC 19624]
Length = 194
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 120/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D +I +Y+N PGGS+ + ++I+
Sbjct: 19 DIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKEISLYINSPGGSVSAGMSIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+++PN++IM++QP G+ G +++
Sbjct: 79 DTMNFIKPDVSTLCIGMAASMGAFLLAAGAKGKRFSLPNSKIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +R +++++ A TGQP+EK+++ TERD +LSA EA ++GL+D ++
Sbjct: 139 HAREILKTREQLNKILAERTGQPLEKIERDTERDYYLSADEAKDYGLVDQVI 190
>gi|294500553|ref|YP_003564253.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium QM B1551]
gi|294350490|gb|ADE70819.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium QM B1551]
Length = 193
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN +A ++QL+ LA D DI +Y+N PGGS + AIY
Sbjct: 19 DIYSRLLKDRIILIGDEINDHIANSVVAQLLFLAADDPKKDISLYINSPGGSTSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G+AAS A++L G KG RYA+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQYIEPDVQTICTGMAASFGALLLLAGAKGKRYALPNSEIMIHQPLGGARGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + I+ + + TGQP+EKV TERD F+SA EA E+G+IDGIL
Sbjct: 139 SARRILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAEEAKEYGVIDGIL 190
>gi|440781233|ref|ZP_20959575.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
pasteurianum DSM 525]
gi|440220838|gb|ELP60044.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
pasteurianum DSM 525]
Length = 194
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIVFLGEDVNDATASLIVAQLLFLESEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
N + + K++ + + TGQP+E +++ TERD FL A A E+GLID ++
Sbjct: 139 HANRILSIKKKLNSILSERTGQPLEIIEKDTERDNFLDAVTAKEYGLIDEVI 190
>gi|206896158|ref|YP_002247153.1| Clp protease [Coprothermobacter proteolyticus DSM 5265]
gi|206738775|gb|ACI17853.1| Clp protease [Coprothermobacter proteolyticus DSM 5265]
Length = 199
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 83 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ TP G D+ S L R+RI+FI I +A I+QL+ L D DI
Sbjct: 3 PLIPYVIEQTPRGERGYDIYSRLLRDRIVFINGEIEPEMAGVVIAQLLFLEAEDPKRDIY 62
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGG + LAIYD M +I+P V T+C G AAS AAI+LA G KG R+A+PN+RI+
Sbjct: 63 VYINSPGGIVTDGLAIYDTMQYIEPDVVTMCIGQAASMAAILLAAGTKGKRFALPNSRIL 122
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
L+QP G G V DV+ Q E V + +I+ + + TGQPI+++ Q T+RD L+ EA+
Sbjct: 123 LHQPMGGVQGQVTDVEIQAKELVRIKQRINEILSVHTGQPIDRILQDTDRDFILTPDEAV 182
Query: 259 EFGLIDGIL 267
++G+ID ++
Sbjct: 183 QYGVIDQVI 191
>gi|334141356|ref|YP_004534562.1| ATP-dependent Clp protease, protease subunit [Novosphingobium sp.
PP1Y]
gi|359397994|ref|ZP_09191018.1| ATP-dependent Clp protease, protease subunit [Novosphingobium
pentaromativorans US6-1]
gi|333939386|emb|CCA92744.1| ATP-dependent Clp protease, protease subunit [Novosphingobium sp.
PP1Y]
gi|357600412|gb|EHJ62107.1| ATP-dependent Clp protease, protease subunit [Novosphingobium
pentaromativorans US6-1]
Length = 222
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 114/175 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+ + +A ++QL+ L + + DI MY+N PGG + + +AI
Sbjct: 38 FDIYSRLLRERIVFVTGEVEDHMASLIVAQLLFLESENPSKDISMYINSPGGVVTAGMAI 97
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +IKP+V TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 98 HDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMVHQPSGGARGMASDIE 157
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ +Y +TG+ +++++Q +RD FL A EA+ FGL+D + ET
Sbjct: 158 IQAREILRMRKRLNDLYVKYTGKSLDEIEQAMDRDTFLEAEEALAFGLVDKVFET 212
>gi|451936350|ref|YP_007460204.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777273|gb|AGF48248.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 210
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L + RI+F+ P+ A I+QL+ L + D DI +Y
Sbjct: 19 VPTVIEQSGRSERAYDIYSRLLKERIVFLSGPVTDYSANLVIAQLLFLESDDPSKDIFLY 78
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+Y+ +AI+D M++IKP + T+C G+AAS A +LA G KG R+++PNA +M++
Sbjct: 79 VNSPGGSVYAGMAIFDTMNFIKPDISTMCVGIAASMGAFLLASGTKGKRFSLPNACMMIH 138
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G D++ E + R++++++ A TGQ +EK+ T+RD F+SA +A+ +
Sbjct: 139 QPSGGAQGQASDIQIHAEEILRLRNRLNKILADNTGQTMEKISNDTDRDNFMSANDALNY 198
Query: 261 GLIDGIL 267
GLID IL
Sbjct: 199 GLIDKIL 205
>gi|443316648|ref|ZP_21046084.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 6406]
gi|442783734|gb|ELR93638.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 6406]
Length = 226
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 74 IISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLA 129
I S + ++P V+ G D+ S L R RI+F+G P+ VA ++QL+ L
Sbjct: 15 IYSAAHQTRNMLPMVVEQSGRGERAFDIYSRLLRERIVFLGTPVTDAVADAIVAQLLFLD 74
Query: 130 TIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR 189
+ + D+ +Y+N PGGS+ + +AIYD M I+P V T+CFG+AAS A +L GG KG R
Sbjct: 75 AEEPEKDVQIYINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLCGGAKGKR 134
Query: 190 YAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249
++P++RIM++QP G+ G D++ Q E + + +++ + A +GQ +E+++ TERD
Sbjct: 135 LSLPSSRIMVHQPLGGAQGQAVDIEIQAREILYHKQRLNELIAHHSGQTLERIEADTERD 194
Query: 250 RFLSAAEAMEFGLIDGILETE 270
++SA EA +GLID ++E +
Sbjct: 195 FYMSAEEAKRYGLIDQVVERQ 215
>gi|294670412|ref|ZP_06735294.1| hypothetical protein NEIELOOT_02131 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307876|gb|EFE49119.1| hypothetical protein NEIELOOT_02131 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 211
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 122/195 (62%), Gaps = 6/195 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RIIF+ P+ A ++Q++ L + + D D
Sbjct: 7 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDHTANLVVAQMLFLESENPDKD 66
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y++ PGGS+ + ++++D M++IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 67 IFFYIDSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPNSR 126
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
IM++QP G GG D++ E + + K++ + A TGQP+EKV++ T+RD F+S+
Sbjct: 127 IMIHQPLISGGLGGQASDIEIHARELIKLKQKLNELLAKHTGQPLEKVERDTDRDNFMSS 186
Query: 255 AEAMEFGLIDGILET 269
A E+GLID ++ T
Sbjct: 187 EAAKEYGLIDEVIAT 201
>gi|260654935|ref|ZP_05860423.1| Clp protease [Jonquetella anthropi E3_33 E1]
gi|424844795|ref|ZP_18269406.1| protease subunit of ATP-dependent protease [Jonquetella anthropi
DSM 22815]
gi|260630250|gb|EEX48444.1| Clp protease [Jonquetella anthropi E3_33 E1]
gi|363986233|gb|EHM13063.1| protease subunit of ATP-dependent protease [Jonquetella anthropi
DSM 22815]
Length = 195
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G INS+VA ++Q++ L + D DI +Y+N PGG + S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGSEINSLVANSIVAQILFLESDQPDRDICLYINSPGGEVTSGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K + T+ G+AAS A+I+LA G G R A+PN+++M++QP G+ G DV+
Sbjct: 81 DTMRYVKCDISTIVVGMAASMASILLAAGTPGKRIALPNSQVMIHQPMGGAYGQASDVEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + +R +++ + A TGQP+ +++ T+RD FLSAAEA +GL+D ++E
Sbjct: 141 HAREILKTRQRLNEILALHTGQPLSRIEVDTDRDHFLSAAEAQSYGLVDRVIE 193
>gi|434398580|ref|YP_007132584.1| ATP-dependent Clp protease proteolytic subunit [Stanieria
cyanosphaera PCC 7437]
gi|428269677|gb|AFZ35618.1| ATP-dependent Clp protease proteolytic subunit [Stanieria
cyanosphaera PCC 7437]
Length = 200
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ ++ +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIESSGRGERAFDIYSRLLRERIVFLGQQVDDDIANLIVAQLLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + ++D M+ I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGMGMFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K+++ A TGQP+ K+++ TERD F+SA E+ E
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQKLNQHLADHTGQPLSKIEEDTERDFFMSAEESKE 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDQVI 188
>gi|148239550|ref|YP_001224937.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 7803]
gi|147848089|emb|CAK23640.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
WH 7803]
Length = 196
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSESANRIVAQLLFLEAEDPEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + ++++++ + T QP+EK+Q+ T+RD F+S EA++
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKNRLNQELSERTSQPLEKIQEDTDRDFFMSPNEAVD 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDSVID 189
>gi|187928950|ref|YP_001899437.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
12J]
gi|241663134|ref|YP_002981494.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
12D]
gi|309781948|ref|ZP_07676679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
5_7_47FAA]
gi|404377636|ref|ZP_10982736.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia sp.
5_2_56FAA]
gi|187725840|gb|ACD27005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
pickettii 12J]
gi|240865161|gb|ACS62822.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
pickettii 12D]
gi|308919292|gb|EFP64958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
5_7_47FAA]
gi|348611501|gb|EGY61146.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia sp.
5_2_56FAA]
Length = 215
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ S LA+YD M +IKP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSSGLAMYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRLALPNSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + + TGQP++K+ + T+RD F+S+ +A E
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRERLNTVLSEVTGQPVDKIARDTDRDNFMSSEQAKE 204
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 205 YGLIDQVI 212
>gi|93007058|ref|YP_581495.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter
cryohalolentis K5]
gi|92394736|gb|ABE76011.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
cryohalolentis K5]
Length = 231
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 115/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R R+IF+ + +A ++QL+ L + D DI +Y+N PGGS+ + LAI
Sbjct: 52 FDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAI 111
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M++IKP+V T+C G A S + +LA GEKG RYA+ NAR+M++QP G+ G D++
Sbjct: 112 FDTMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIE 171
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + +R +++ + A TGQP++K+++ ERD +L A EA E+GLID +LE
Sbjct: 172 INAREILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAKEAKEYGLIDEVLE 225
>gi|386388774|ref|ZP_10073627.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Haemophilus paraphrohaemolyticus HK411]
gi|385697288|gb|EIG27723.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Haemophilus paraphrohaemolyticus HK411]
Length = 197
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 118/188 (62%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L + RIIF+ + +A ++QL+ L D + DI +
Sbjct: 3 LVPMVVEQTPKGERSYDIFSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + LAIYD M++IKP V T+C G A S A +L+GG KG R+A+PNAR+M+
Sbjct: 63 YINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + + R A +GQ EKV TERD F+SA EAME
Sbjct: 123 HQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQSFEKVAADTERDNFMSAQEAME 182
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 183 YGLIDKVL 190
>gi|269102129|ref|ZP_06154826.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268162027|gb|EEZ40523.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 207
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG KG RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++ + A TGQP+E +++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVL 203
>gi|313887837|ref|ZP_07821517.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846180|gb|EFR33561.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 194
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+ +N +A ++QL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIFLSGEVNDTMADLIVAQLLFLEAEDPNKDIQLYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMNYIKPDVSTICIGMAASMGAFLLASGAKGKRFALPNSDIMIHQPSGGAQGQASDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + RHK++ + A TGQ +EK+++ T+RD +L++ EA ++GLID ++E
Sbjct: 139 NAEKILKIRHKLNEILAERTGQDLEKIEKDTDRDYWLNSQEAKDYGLIDKVIE 191
>gi|334129245|ref|ZP_08503050.1| ATP-dependent Clp protease proteolytic subunit [Methyloversatilis
universalis FAM5]
gi|333445471|gb|EGK73412.1| ATP-dependent Clp protease proteolytic subunit [Methyloversatilis
universalis FAM5]
Length = 206
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 118/190 (62%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R R++F+ P+N A ++QL+ L + + D DI
Sbjct: 10 MVPMVIEQSGRGERAYDIYSRLLRERVVFLVGPVNDATANLIVAQLLFLESENPDKDIFF 69
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L+IYD M +IKP V T+C G AAS A +L+ G KG R +PN+R+M+
Sbjct: 70 YINSPGGSVTAGLSIYDTMQFIKPDVSTLCIGQAASMGAFLLSAGAKGKRACLPNSRVMI 129
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + R K++ + + TGQPIE +++ T+RD FLSA +A E
Sbjct: 130 HQPMGGFQGQASDIEIHAREILTLRAKLNTIMSHHTGQPIETIERDTDRDNFLSAEQARE 189
Query: 260 FGLIDGILET 269
+G+ID +L T
Sbjct: 190 YGIIDKVLTT 199
>gi|329120061|ref|ZP_08248731.1| ATP-dependent Clp protease, protease subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327463592|gb|EGF09910.1| ATP-dependent Clp protease, protease subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 211
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 122/195 (62%), Gaps = 6/195 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RIIF+ P+N A ++Q++ L + + D D
Sbjct: 7 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLIGPVNDHTANLVVAQMLFLESENPDKD 66
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGGS+ + ++++D M++IKP V T+C G AAS A +L+ G KG R+A+P++R
Sbjct: 67 IFFYINSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPHSR 126
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+M++QP G GG D++ E + + ++ + A TGQPIEK+++ T+RD F+SA
Sbjct: 127 VMIHQPLISGGLGGQASDIEIHARELIKLKQTLNELLAKHTGQPIEKIERDTDRDNFMSA 186
Query: 255 AEAMEFGLIDGILET 269
A E+GLID ++ T
Sbjct: 187 QAAKEYGLIDQVIAT 201
>gi|269837422|ref|YP_003319650.1| endopeptidase Clp [Sphaerobacter thermophilus DSM 20745]
gi|269786685|gb|ACZ38828.1| Endopeptidase Clp [Sphaerobacter thermophilus DSM 20745]
Length = 209
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R+RIIF+G P++ +A I+Q++ L + + DI +Y+N PGG +Y+ LAIY
Sbjct: 28 DIYSRLLRDRIIFLGTPVDDQIANAIIAQMIFLEYENPEQDIKLYINSPGGLVYAGLAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M I+ V T C G+ AS AA++LA G KG R+A+PN+RI+++Q SG G V D++
Sbjct: 88 DTMQMIRCDVATYCIGLGASMAAVLLAAGTKGKRFALPNSRILIHQGSSGFRGSVPDIEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + K+ + A TGQ E+V++ TERD F+SA EA E+G++D +LE
Sbjct: 148 QARETINLTTKMTEIMAYHTGQSFERVKRDTERDYFMSAQEAKEYGIVDHVLE 200
>gi|22298052|ref|NP_681299.1| ATP-dependent Clp protease proteolytic subunit [Thermosynechococcus
elongatus BP-1]
gi|34222557|sp|Q8DLI2.1|CLPP1_THEEB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|22294230|dbj|BAC08061.1| ATP-dependent Clp protease proteolytic subunit 1
[Thermosynechococcus elongatus BP-1]
Length = 229
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 116/179 (64%), Gaps = 6/179 (3%)
Query: 95 LDLSSVLFRNRIIFIG------QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI 148
D+ S L R RIIF+G + I+ VA ++QL+ L D + DI +Y+N PGGS+
Sbjct: 43 FDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPGGSV 102
Query: 149 YSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG 208
+ +AIYD M I+P V T+CFG+AAS A +L+GG G R A+PNARIM++QP G+ G
Sbjct: 103 TAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPGKRMALPNARIMIHQPLGGAQG 162
Query: 209 HVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
D++ Q E + + K++ + + TGQPIE+++ TERD F+SA EA +GLID ++
Sbjct: 163 QAVDIEIQAREILYHKRKLNELLSQHTGQPIERIEADTERDFFMSAEEAKAYGLIDQVV 221
>gi|163781838|ref|ZP_02176838.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
128-5-R1-1]
gi|159883058|gb|EDP76562.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
128-5-R1-1]
Length = 201
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L + D D DI +
Sbjct: 10 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGFPIDDHVANLIVAQLLFLESQDPDKDIYL 69
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +A+YD M +IKP V T+C G AAS A++LA G KG RYA+P++RIM+
Sbjct: 70 YINSPGGSVTAGMAVYDTMQYIKPDVVTICIGQAASMGAVLLAAGAKGKRYALPHSRIMI 129
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E + ++ + A TGQ +EK+++ ERD F+SA EA +
Sbjct: 130 HQPLGGIQGQATDIIIHAEEIKRIKRMLNEILAKHTGQDLEKIEKDVERDYFMSAEEAKD 189
Query: 260 FGLIDGILE 268
+G+ID ++E
Sbjct: 190 YGVIDKVIE 198
>gi|428319265|ref|YP_007117147.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
gi|428242945|gb|AFZ08731.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
Length = 202
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RI+F+GQ ++S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVDSDLANLIVAQLLFLDAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
YLN PGGS+ + + I+D M+ I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YLNSPGGSVTAGMGIFDTMNHIRPDVCTICLGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQP+ ++++ TERD F+SA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEHLANHTGQPLSRIEEDTERDFFMSAEEAKD 180
Query: 260 FGLIDGILE 268
+GL+D +++
Sbjct: 181 YGLVDQVID 189
>gi|56751593|ref|YP_172294.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 6301]
gi|3023500|sp|O34125.1|CLPP2_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|67460442|sp|Q5N1P6.1|CLPP3_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|15620530|gb|AAL03914.1|U30252_2 ClpP2 [Synechococcus elongatus PCC 7942]
gi|2351823|gb|AAB68677.1| ATP-dependent Clp protease, proteolytic subunit [Synechococcus
elongatus PCC 7942]
gi|56686552|dbj|BAD79774.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 6301]
Length = 240
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 134/227 (59%), Gaps = 10/227 (4%)
Query: 45 SSSGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSV 100
S + L I +R L +D + + + I+G ++P V+ G D+ S
Sbjct: 4 SHASLPIHSRRLAAGLDSR---WQQPQIQAIAGSQ---AIVPTVVEQSGRGERAFDIYSR 57
Query: 101 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 160
L R RI+F+G ++ VA ++QL+ L D + DI +Y+N PGGS+ + +AIYD M
Sbjct: 58 LLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQ 117
Query: 161 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 220
+ P V T+CFG+AAS A +L+GG +G R A+P+ARIM++QP G+ G D++ Q E
Sbjct: 118 VAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQAREI 177
Query: 221 VISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ + A TGQP+EK++ T+RD F+S EA +GLID +L
Sbjct: 178 LYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224
>gi|116243153|sp|Q1Q8J2.2|CLPP_PSYCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 215
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 115/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R R+IF+ + +A ++QL+ L + D DI +Y+N PGGS+ + LAI
Sbjct: 36 FDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAI 95
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M++IKP+V T+C G A S + +LA GEKG RYA+ NAR+M++QP G+ G D++
Sbjct: 96 FDTMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIE 155
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + +R +++ + A TGQP++K+++ ERD +L A EA E+GLID +LE
Sbjct: 156 INAREILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAKEAKEYGLIDEVLE 209
>gi|443322206|ref|ZP_21051237.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gloeocapsa
sp. PCC 73106]
gi|442788092|gb|ELR97794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gloeocapsa
sp. PCC 73106]
Length = 202
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 119/189 (62%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ + +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIIFLGEEVTDELANLIVAQLLFLEAEDPEKDINL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L I+D M+ + P V T+C G+AAS A +L GG KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQVSPDVSTICIGLAASMGAFLLTGGAKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+ Q E + + K++ A T QP+EK+++ TERD F+SA EA +
Sbjct: 121 HQPLGGAQGQAADIAIQAQEILYIKKKLNLYLANNTNQPLEKIEEDTERDFFMSAEEAKQ 180
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 181 YGLIDKVIE 189
>gi|428216584|ref|YP_007101049.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
sp. PCC 7367]
gi|427988366|gb|AFY68621.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
sp. PCC 7367]
Length = 197
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ ++ V+ ++Q++ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIFSRLLRERIVFLGQQVDDTVSNLIVAQMLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M I+P V T+C G+AAS A +LAGG G R ++P+ RIM+
Sbjct: 61 YVNSPGGSVTAGMAIYDTMQHIQPDVSTICVGLAASMGAFLLAGGAAGKRLSLPHTRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A+ TGQP +++ + TERD F+SA EA +
Sbjct: 121 HQPLGGAQGQAADIEIQAKEILYHKQRLNELLASHTGQPFDRIAEDTERDFFMSAQEAKD 180
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 181 YGLLDEVV 188
>gi|320354136|ref|YP_004195475.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
propionicus DSM 2032]
gi|320122638|gb|ADW18184.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
propionicus DSM 2032]
Length = 200
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 118/188 (62%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ +P G D+ S L + RIIF+G +N VA ++QL+ L D D DI
Sbjct: 3 LVPMVVEQSPRGERAFDIYSRLLKERIIFLGTQVNDDVASLVVAQLLFLEAEDPDKDITF 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +I+ V T+C G AAS A++LA G G R+A+PN+RIM+
Sbjct: 63 YINSPGGSVTAGMAIYDTMQYIRCDVATLCMGQAASMGALLLASGAAGKRFALPNSRIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E + RH ++ + A TG+ ++K+Q TERD F+SA EA E
Sbjct: 123 HQPMGGYQGQATDIDIHAREILRMRHDLNTILARHTGKSMKKIQADTERDNFMSATEACE 182
Query: 260 FGLIDGIL 267
+G+ID +L
Sbjct: 183 YGIIDKVL 190
>gi|365855578|ref|ZP_09395623.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Acetobacteraceae bacterium AT-5844]
gi|363719005|gb|EHM02324.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Acetobacteraceae bacterium AT-5844]
Length = 218
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 123/192 (64%), Gaps = 4/192 (2%)
Query: 81 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ T G D+ S L + RIIF+ PI VA +QL+ L + + + D
Sbjct: 11 NNTLIPMVIEQTARGERSFDIYSRLLKERIIFLTGPIFDQVASLICAQLLFLESENPNKD 70
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGG + + LA+YD M +I+ V TVC G+AAS +++L GEKG R+A+PN++
Sbjct: 71 IAFYINSPGGVVTAGLAMYDTMQYIRAPVSTVCLGMAASAGSLLLTAGEKGKRFALPNSQ 130
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
+M++QP G+ G D+ Q E + +R +++++Y TGQPIE++++ ERD +L+A E
Sbjct: 131 VMIHQPSGGAQGQATDIAIQAREILKTRERLNKIYVQHTGQPIEEIEKNMERDTYLTAEE 190
Query: 257 AMEFGLIDGILE 268
A FGLID ++E
Sbjct: 191 AKAFGLIDQVVE 202
>gi|307150040|ref|YP_003885424.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7822]
gi|306980268|gb|ADN12149.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7822]
Length = 203
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RI+F+GQ + + +A ++QL+ L + D D DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRDRIVFLGQEVTNDLANLIVAQLLFLESEDPDKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLNAGAKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A+ TGQP+EK+ + TERD F+SA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNQHLASRTGQPLEKIAEDTERDFFMSAEEAKD 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDQVI 188
>gi|300114126|ref|YP_003760701.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
watsonii C-113]
gi|299540063|gb|ADJ28380.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
watsonii C-113]
Length = 203
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R++F+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + L+IY
Sbjct: 24 DIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGLSIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++LAGG G R+ +P++R++++QP G G D+
Sbjct: 84 DTMQFIKPDVSTLCVGQAASMGAVLLAGGAPGKRHCLPHSRLLIHQPLGGFQGQATDIDI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E ++ R +++ + A TGQPIEK+Q T+RD F+SA E++ +GL+D +L+
Sbjct: 144 HAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFMSATESLAYGLVDSVLK 196
>gi|381400295|ref|ZP_09925271.1| ATP-dependent Clp protease proteolytic subunit [Kingella kingae
PYKK081]
gi|380834682|gb|EIC14511.1| ATP-dependent Clp protease proteolytic subunit [Kingella kingae
PYKK081]
Length = 205
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 122/193 (63%), Gaps = 6/193 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RIIF+ P+N A ++Q++ L + + D D
Sbjct: 6 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQMLFLESENPDKD 65
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 66 IYFYINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSR 125
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
+M++QP G GG D++ E + + K+++M A TG+ + +V++ T+RD F+SA
Sbjct: 126 VMIHQPLISGGLGGQASDIEIHARELLKLKEKLNQMLAEHTGKTLAEVERDTDRDNFMSA 185
Query: 255 AEAMEFGLIDGIL 267
EA+E+GLID ++
Sbjct: 186 QEAIEYGLIDKVI 198
>gi|229828304|ref|ZP_04454373.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
14600]
gi|229792898|gb|EEP29012.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
14600]
Length = 190
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N A ++QL+ L + D + DI +Y+N PGG + +AIY
Sbjct: 16 DIYSRLLKDRIIFLGEDVNETTASLIVAQLLFLESEDPNKDIHLYINSPGGVVTCGMAIY 75
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 76 DTMNYIKPDVSTICIGMAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAKGQATEIEI 135
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++++ A TG+ E+V TERD +L A EA+E+G++D I++
Sbjct: 136 AAESILKTKRKMNQILADNTGKTYEQVAADTERDHYLDAKEALEYGIVDQIID 188
>gi|441506114|ref|ZP_20988091.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
AK15]
gi|441426253|gb|ELR63738.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
AK15]
Length = 207
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG +G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAQGKRYCLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++ + A TGQP+E V++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNNLLAEHTGQPLEVVERDTDRDNFMSAEQAVEYGLVDAVL 203
>gi|127513436|ref|YP_001094633.1| ATP-dependent Clp protease proteolytic subunit [Shewanella loihica
PV-4]
gi|171855248|sp|A3QFX6.1|CLPP_SHELP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|126638731|gb|ABO24374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
loihica PV-4]
Length = 203
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGG KG R+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++K+++M A TGQP+E +++ T+RD F+SA EA E+GL+D +L+
Sbjct: 148 HAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSVLD 200
>gi|428306359|ref|YP_007143184.1| ATP-dependent Clp protease proteolytic subunit ClpP [Crinalium
epipsammum PCC 9333]
gi|428247894|gb|AFZ13674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Crinalium
epipsammum PCC 9333]
Length = 202
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIIFLGQQVDADLANLIVAQLLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ I+P + T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGMGIFDTMNQIRPDISTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQP+EK+++ TERD F+SA E+
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEFLAQHTGQPLEKIEEDTERDFFMSAEESKN 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|119491296|ref|ZP_01623350.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
8106]
gi|119453460|gb|EAW34622.1| ATP-dependent Clp protease proteolytic subunit [Lyngbya sp. PCC
8106]
Length = 203
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 125/191 (65%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RIIF+GQ + + +A ++Q++ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIIFLGQQVTADLANLIVAQMLFLDADDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L IYD M+ I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGLGIYDTMNHIRPDVSTICIGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++++ A TGQP+ +++Q TERD F+SA EA++
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKRLNQSLADHTGQPMSRIEQDTERDFFMSAQEAVD 180
Query: 260 FGLIDGILETE 270
+GLID + + +
Sbjct: 181 YGLIDQVYDRK 191
>gi|343496564|ref|ZP_08734660.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
nigripulchritudo ATCC 27043]
gi|342821177|gb|EGU55971.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
nigripulchritudo ATCC 27043]
Length = 208
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERIIFLTGQVEDQMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG +G R+ +PN+R+M++QP G G D++
Sbjct: 92 DTMQYIKPNVSTVCMGQACSMGAFLLAGGAEGKRHVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDSVL 203
>gi|348673459|gb|EGZ13278.1| hypothetical protein PHYSODRAFT_351880 [Phytophthora sojae]
Length = 226
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ +P G D+ S L + RI+F+ P+N +A +QL+ L + + + D+ M
Sbjct: 27 LVPMVLEQSPRGERVFDIYSRLLKERIVFVHGPVNDDMASLVTAQLLFLESENPEKDVYM 86
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + S LAIYD M +I+PKV T+C G AAS +++LAGG G R A+PN+RIM+
Sbjct: 87 YINSPGGIVSSGLAIYDTMQYIQPKVNTLCMGQAASMGSLLLAGGTPGCRSALPNSRIMI 146
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+ Q E + R +++ +YA+ TG+P++ ++Q +RD F+ EA E
Sbjct: 147 HQPSGGAQGMASDIAIQAEEIIKLRARLNGLYASHTGKPLKVIEQAMDRDLFMDPREAQE 206
Query: 260 FGLIDGIL 267
FG+ID I+
Sbjct: 207 FGIIDSII 214
>gi|443312110|ref|ZP_21041730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechocystis
sp. PCC 7509]
gi|442777788|gb|ELR88061.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechocystis
sp. PCC 7509]
Length = 202
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQKVDSNLANLIVAQLLFLDAEDAEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D + I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTIKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++ A TGQP+EK+ + TERD F+S EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRKLNEHLAEHTGQPLEKIAEDTERDFFMSPTEAKD 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDQVI 188
>gi|440682480|ref|YP_007157275.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
cylindrica PCC 7122]
gi|428679599|gb|AFZ58365.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
cylindrica PCC 7122]
Length = 201
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ ++S +A ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQPIE++ + TERD F+S EA E
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDYLAEHTGQPIERIAEDTERDFFMSPEEAQE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|260102504|ref|ZP_05752741.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
gi|417020696|ref|ZP_11947332.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
helveticus MTCC 5463]
gi|112148370|gb|ABI13539.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
helveticus CNRZ32]
gi|260083687|gb|EEW67807.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
gi|328461831|gb|EGF34057.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
helveticus MTCC 5463]
Length = 194
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+IIL G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASIILTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP+EK+Q+ TERD +L+A EA E+GLID I+
Sbjct: 138 AANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKEYGLIDEIM 189
>gi|403068129|ref|ZP_10909461.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus sp.
Ndiop]
Length = 196
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ V+ ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIILLGSGIDDNVSNSIVAQLLFLEAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +L G+KG RYA+PN+ IM++QP G+ G D++
Sbjct: 79 DTMNFIKPDVSTICIGMAASMGAFLLTAGQKGKRYALPNSEIMIHQPLGGTQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +++ + A TGQP+E +++ TERD F++A ++E+GLID ILE
Sbjct: 139 HARRIIEIKKRMNEIMAEKTGQPLEVIERDTERDNFMTAQASVEYGLIDQILE 191
>gi|77165153|ref|YP_343678.1| endopeptidase Clp [Nitrosococcus oceani ATCC 19707]
gi|254434725|ref|ZP_05048233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
oceani AFC27]
gi|110816460|sp|Q3JAJ8.1|CLPP_NITOC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|76883467|gb|ABA58148.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
oceani ATCC 19707]
gi|207091058|gb|EDZ68329.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
oceani AFC27]
Length = 203
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R++F+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + L+IY
Sbjct: 24 DIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGLSIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++LAGG G R+ +P++R++++QP G G D+
Sbjct: 84 DTMQFIKPDVSTLCVGQAASMGAVLLAGGAGGKRHCLPHSRLLIHQPLGGFQGQATDIDI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E ++ R +++ + A TGQPIEK+Q T+RD F+SA E++ +GL+D +L+
Sbjct: 144 HAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFMSATESLAYGLVDSVLK 196
>gi|220934115|ref|YP_002513014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995425|gb|ACL72027.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 216
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 115/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF P+ +A ++QL+ L + + D DI +Y+N PGG++ + +AIY
Sbjct: 35 DIYSRLLKERVIFAVGPVEDYMANVIVAQLLFLESENPDKDISLYINSPGGAVTAGMAIY 94
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++LAGG KG R+ +P++R+M++QP G G D+
Sbjct: 95 DTMQFIKPDVSTLCIGQAASMGAVLLAGGAKGKRFCLPHSRVMIHQPLGGFQGQATDIDI 154
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + R +++R+ A TGQ IE+++Q TERDRFL+ EA E+GLID +L +
Sbjct: 155 HAREILKVRAELNRILAHHTGQSIEQIEQDTERDRFLNPVEAAEYGLIDQVLSS 208
>gi|220906939|ref|YP_002482250.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. PCC
7425]
gi|219863550|gb|ACL43889.1| Endopeptidase Clp [Cyanothece sp. PCC 7425]
Length = 198
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 127/190 (66%), Gaps = 5/190 (2%)
Query: 83 PLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P +P M PG P +D+ + L+R RIIF+G+ ++ +A + ++ ++ L + D DI+
Sbjct: 6 PKVPYRM-PGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIV 64
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGS+ + +AIYD M IK V T+C G+AAS + +L G G R A+P++RIM
Sbjct: 65 LYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLTAGAPGKRLALPHSRIM 124
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D++ + E + RH+++++YA TGQP+EK+++ +RD F+SA EA
Sbjct: 125 IHQPSGGTRGQASDIEIEAREIIRIRHQLNQIYADRTGQPLEKIEKDIDRDYFMSAQEAK 184
Query: 259 EFGLIDGILE 268
++GLID ++E
Sbjct: 185 DYGLIDRVIE 194
>gi|89900346|ref|YP_522817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodoferax
ferrireducens T118]
gi|89345083|gb|ABD69286.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodoferax
ferrireducens T118]
Length = 209
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N VA ++QL+ L + + D DI Y+N PGGS+ + +AI+
Sbjct: 34 DIYSRLLKERVIFLVGPVNDYVANLVVAQLLFLESDNPDKDISFYINSPGGSVSAGMAIF 93
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+++KP V T+C G+AAS A +LA G KG R+++PN+++M++QP GS G +++
Sbjct: 94 DTMNFVKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKVMIHQPSGGSQGQATEIEI 153
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + +R +++++ A TGQP+ ++++ TERD ++SA E E+GLID ++
Sbjct: 154 QAREILKTREQLNKILAERTGQPLARIERDTERDYYMSADECKEYGLIDQVI 205
>gi|218440358|ref|YP_002378687.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp.
PCC 7424]
gi|218173086|gb|ACK71819.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7424]
Length = 203
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RI+F+GQ + + +A ++QL+ L + D D DI +
Sbjct: 1 MIPTVIESSGRGERAFDIYSRLLRDRIVFLGQEVTNDLANTIVAQLLFLESEDPDKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L G K R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLCAGAKDKRMSLPNSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A+ TGQP+EK+ + TERD F+SA EA E
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKGLLNQHLASRTGQPLEKIAEDTERDFFMSAEEAQE 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDQVI 188
>gi|414079240|ref|YP_007000664.1| peptidase family S14 ClpP [Anabaena sp. 90]
gi|413972519|gb|AFW96607.1| peptidase family S14 ClpP [Anabaena sp. 90]
Length = 201
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ ++S +A ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGEQVDSNLANLIVAQLLFLDSEDAEKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+ Q E + + +++ A TGQP E++ + TERD F+S AEA E
Sbjct: 121 HQPLGGAQGQATDIAIQAREILYHKQRLNEFLADHTGQPFERISEDTERDFFMSPAEAKE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|359299708|ref|ZP_09185547.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
[parainfluenzae] CCUG 13788]
gi|402306845|ref|ZP_10825880.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Haemophilus sputorum HK 2154]
gi|400373868|gb|EJP26793.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Haemophilus sputorum HK 2154]
Length = 197
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFLNGQVEDQMANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G A S A +L+GG KG R+A+PNAR+M++QP G+ G D++
Sbjct: 79 DTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + + R A +GQP EK+ TERD F+SA EAME+GLID +L
Sbjct: 139 HAREILKLKEMLTRKMAEHSGQPFEKLAADTERDNFMSATEAMEYGLIDKVL 190
>gi|428299969|ref|YP_007138275.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
gi|428236513|gb|AFZ02303.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
Length = 198
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 124/184 (67%), Gaps = 4/184 (2%)
Query: 91 PGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG 146
PGG +D+ + LF RIIF+G+ ++ +A + I++++ L + D DI++Y+N PGG
Sbjct: 13 PGGQQTQWIDIYNRLFLERIIFLGREVDDDIANKIIAEMLYLDSEDPGKDIILYINSPGG 72
Query: 147 SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 206
S+ + LAI+D M IK V T+C G+AAS + +L G KG R A+P++RIM++QP G+
Sbjct: 73 SVSAGLAIFDTMQHIKSDVATICVGLAASMGSFLLTAGTKGKRLALPHSRIMIHQPSGGT 132
Query: 207 GGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGI 266
G D++ + E + RH+++ +YA TGQ ++K+++ +RD F+SAAEA E+GL+D +
Sbjct: 133 RGQATDIEIEAREIIRIRHQLNNIYANTTGQTLQKIEKDMDRDFFMSAAEAKEYGLVDRV 192
Query: 267 LETE 270
+E +
Sbjct: 193 IEEK 196
>gi|306820816|ref|ZP_07454440.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|402310280|ref|ZP_10829246.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium sp. AS15]
gi|304551134|gb|EFM39101.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|400368732|gb|EJP21739.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium sp. AS15]
Length = 195
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G +N A ++QL+ L + D D DI Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKERIIFLGDEVNDQTASLIVAQLLFLESEDPDKDIHFYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS A +L+ G+KG RYA+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTICVGMAASMGAFLLSSGKKGKRYALPNSEIMIHQPLGGTKGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++ + A TG+ IE + + TERD F+SA EA ++GLID ++
Sbjct: 139 HAERIIRLRKKLNEIMAEQTGKSIEIINKDTERDFFMSAEEAKDYGLIDSVM 190
>gi|237745591|ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
gi|229376942|gb|EEO27033.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
Length = 207
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 123/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + RIIF+ P+ A ++QL+ L + + + DI +
Sbjct: 16 MIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDQNANLIVAQLLFLESENPEKDISL 75
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +I+P+V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFIRPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 135
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ E + R +++ + A TG+P+E++ + TERD F+SAAEA +
Sbjct: 136 HQPSGGAQGQATDIEIHAREILYLRERLNGILAENTGKPVEQIARDTERDNFMSAAEAKD 195
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 196 YGLIDEVL 203
>gi|260435297|ref|ZP_05789267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 8109]
gi|260413171|gb|EEX06467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 8109]
Length = 205
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 9 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 68
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 69 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 128
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + ++++ + TGQP++++QQ T+RD F+S EA+
Sbjct: 129 HQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQPLDRIQQDTDRDFFMSPTEAVN 188
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 189 YGLIDSVID 197
>gi|115483692|ref|NP_001065516.1| Os10g0580800 [Oryza sativa Japonica Group]
gi|12039365|gb|AAG46151.1|AC018727_3 putative Clp protease [Oryza sativa Japonica Group]
gi|31433719|gb|AAP55198.1| ATP-dependent Clp protease proteolytic subunit 3, putative,
expressed [Oryza sativa Japonica Group]
gi|113640048|dbj|BAF27353.1| Os10g0580800 [Oryza sativa Japonica Group]
gi|215737516|dbj|BAG96646.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737683|dbj|BAG96813.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737745|dbj|BAG96875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740822|dbj|BAG96978.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222613342|gb|EEE51474.1| hypothetical protein OsJ_32613 [Oryza sativa Japonica Group]
Length = 293
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ +L R RI+F+G I +A +SQL+ L +D ++DI +++N PGGS+ + +AIY
Sbjct: 80 DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAVDPNSDIRLFVNSPGGSLSATMAIY 139
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++ V T+ G+A S A+IIL GG KG R+AMPN RIM++QP G+ G DV+
Sbjct: 140 DVMQLVRADVSTIGLGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 199
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ + R+ + FTG+ E+V++ +RDR++ EA+++GLID +++ +
Sbjct: 200 QAKEILTNKRNVIRLISGFTGRTPEQVEKDIDRDRYMGPLEAVDYGLIDSVIDGD 254
>gi|238926240|ref|ZP_04658000.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
gi|238885920|gb|EEQ49558.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
Length = 197
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ K+ TERD F+SA EA E+GLID ++
Sbjct: 134 QAKEILRLREVGNEILARHTGQDTAKINIDTERDNFMSAEEAKEYGLIDEVV 185
>gi|91793847|ref|YP_563498.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
denitrificans OS217]
gi|123356647|sp|Q12LA1.1|CLPP_SHEDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|91715849|gb|ABE55775.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
denitrificans OS217]
Length = 203
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGG KG R+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + ++K+++M A TGQP+E +++ T+RD F+SA +AM++GL+D +L
Sbjct: 148 HAQEILGIKNKLNQMLAEHTGQPLEVIERDTDRDNFMSATQAMDYGLVDSLL 199
>gi|387928693|ref|ZP_10131371.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
methanolicus PB1]
gi|387588279|gb|EIJ80601.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
methanolicus PB1]
Length = 201
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA ++QL+ L + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTPIDDYVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPDVQTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ + TGQP+E + + T+RD F++A +A+E+GL+D I+
Sbjct: 139 AAKRILFLRDKLNKILSERTGQPVEVIAKDTDRDNFMTAQQALEYGLVDHII 190
>gi|116243156|sp|Q21Y67.2|CLPP_RHOFD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 202
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+N VA ++QL+ L + + D DI Y+N PGGS+ + +AI+
Sbjct: 27 DIYSRLLKERVIFLVGPVNDYVANLVVAQLLFLESDNPDKDISFYINSPGGSVSAGMAIF 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+++KP V T+C G+AAS A +LA G KG R+++PN+++M++QP GS G +++
Sbjct: 87 DTMNFVKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKVMIHQPSGGSQGQATEIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + +R +++++ A TGQP+ ++++ TERD ++SA E E+GLID ++
Sbjct: 147 QAREILKTREQLNKILAERTGQPLARIERDTERDYYMSADECKEYGLIDQVI 198
>gi|256828014|ref|YP_003156742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfomicrobium baculatum DSM 4028]
gi|256577190|gb|ACU88326.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfomicrobium baculatum DSM 4028]
Length = 198
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ +G PI+ VA +QL+ L + + + I MY+N PGG++ + +AIY
Sbjct: 20 DIYSRLLKDRIVLLGTPIDDHVANSICAQLLFLESENPEKQIYMYINSPGGAVTAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I V T+C G AAS AA++LA GEKGMRY +P++RIM++QP G G D+
Sbjct: 80 DTMQYISAPVATLCIGQAASMAAVLLAAGEKGMRYTLPHSRIMIHQPMGGFQGQATDIAI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ + A TGQ +EKV+Q TERD F+S EA +GLID +L
Sbjct: 140 QAKEIIRLRGELNGILANHTGQTLEKVEQDTERDYFMSGEEACAYGLIDQVL 191
>gi|374369272|ref|ZP_09627306.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
basilensis OR16]
gi|373099185|gb|EHP40272.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
basilensis OR16]
Length = 216
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERLIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M ++KP V T+C G+AAS A +L+ G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFVKPDVATLCMGMAASMGAFLLSAGAKGKRSALPNSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + + TGQP+EK+ + T+RD F+S +A++
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQAVD 204
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 205 YGLIDKVL 212
>gi|452851006|ref|YP_007492690.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
piezophilus]
gi|451894660|emb|CCH47539.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
piezophilus]
Length = 203
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 114/174 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +QL+ L + D + +I MY+N PGGS+ S +AIY
Sbjct: 19 DIYSRLLKDRIILLGSAIDDHVASLICAQLLFLESEDPEKEIYMYINSPGGSVSSGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I V T+C G AAS A++L GE GMRYA+P++RIM++QP G+ G D+
Sbjct: 79 DTMQYISAPVATLCLGQAASMGALLLGAGEAGMRYALPHSRIMIHQPLGGAQGQASDIHI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + R +++ + A TGQ +EK+++ TERD F+S+ EA E+GLID ++ +
Sbjct: 139 HAKEILRLRDELNEIMAGHTGQKLEKIREDTERDYFMSSKEAQEYGLIDKVMSS 192
>gi|304407273|ref|ZP_07388926.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
gi|304343714|gb|EFM09555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
Length = 195
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+QL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTGVNDIVANSIIAQLLFLAADDPEKDISLYINSPGGSITAGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G G RYA+PN+ +M++QP G+ G D++
Sbjct: 81 DTMQFIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEVMIHQPLGGAEGQASDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R K++ + A + QP+E++++ T+RD F+SA EA ++GLID +++
Sbjct: 141 RAKRILKMRDKLNGILAERSNQPLERIEKDTDRDYFMSAEEARQYGLIDKVID 193
>gi|89073230|ref|ZP_01159760.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
SKA34]
gi|90579278|ref|ZP_01235088.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
angustum S14]
gi|89050940|gb|EAR56404.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
SKA34]
gi|90440111|gb|EAS65292.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
angustum S14]
Length = 207
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG KG RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + +++ + A TGQP+E V++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQRLNGLLAEHTGQPLEVVERDTDRDNFMSAEQAVEYGLVDAVL 203
>gi|226507940|ref|NP_001149210.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
gi|195625490|gb|ACG34575.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
Length = 285
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 116/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G P++ A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 72 LDTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGV 131
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M + K V TVCFG+AAS A +LA G KG RY PNARIM++QP G+GG V ++
Sbjct: 132 YDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCXPNARIMIHQPSGGAGGKVTEMG 191
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q+ E + + KI+++ + TG+ E++ + T+ D F+S +EA ++G++D I++
Sbjct: 192 LQIREMMYEKIKINKIMSRITGKSEEQIDEDTKFDYFMSPSEAKDYGIVDNIID 245
>gi|222096291|ref|YP_002530348.1| ATP-dependent clp protease, proteolytic subunit clpp [Bacillus
cereus Q1]
gi|221240349|gb|ACM13059.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus Q1]
Length = 193
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ I+P V T+C G+AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIRPDVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQPIEK+ TERD F++A EA E+G++DG++E +
Sbjct: 139 TAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEAKEYGIVDGVVEKK 193
>gi|262276278|ref|ZP_06054087.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
CIP 101886]
gi|262220086|gb|EEY71402.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
CIP 101886]
Length = 207
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 123/198 (62%), Gaps = 8/198 (4%)
Query: 78 KNDNPPLMPAVM------TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLA 129
KN P +M A++ T G D+ S L + R+IF+ + +A ++QL+ L
Sbjct: 6 KNGMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLE 65
Query: 130 TIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR 189
+ + D DI +Y+N PGGS+ + ++IYD M +IKP V TVC G A S A +LAGG KG R
Sbjct: 66 SENPDKDIFLYINSPGGSVTAGMSIYDTMQYIKPDVSTVCMGQACSMGAFLLAGGAKGKR 125
Query: 190 YAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249
Y +PN+R+M++QP G G D++ E + +H+++ + A TGQP+E +++ T+RD
Sbjct: 126 YCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKHRLNTLLAEHTGQPLEVIERDTDRD 185
Query: 250 RFLSAAEAMEFGLIDGIL 267
F++A +A+ +GL+D +L
Sbjct: 186 NFMAAQDAVNYGLVDAVL 203
>gi|373106651|ref|ZP_09520951.1| ATP-dependent Clp protease proteolytic subunit [Stomatobaculum
longum]
gi|371651590|gb|EHO17016.1| ATP-dependent Clp protease proteolytic subunit [Stomatobaculum
longum]
Length = 193
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+ + +N + A ++QL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIFSRLLKDRIIFLDEEVNDVSAGLVVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G+AAS A +L+GG KG RYA+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYVKCDVSTICIGMAASMGAFLLSGGTKGKRYALPNAEIMIHQPSGGAQGQETEIRI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +R+K++ + AA TG+ +E + + TERD +++AAEA E+GLID ++
Sbjct: 139 VAEQILKTRNKLNEILAANTGKDLEVIARDTERDNYMTAAEAKEYGLIDEVI 190
>gi|304405398|ref|ZP_07387057.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
gi|304345437|gb|EFM11272.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
Length = 194
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I+ VA +QL+ LA D D DI Y+N PGGS + AI
Sbjct: 20 DIYSRLLKDRIVFLGSAIDDQVANVITAQLLFLAAEDPDKDIHFYINSPGGSTSAGFAIL 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AAI+L G KG RYA+PN+ +M++QP G+ G D+
Sbjct: 80 DTMHYIKPDVQTICAGMAASFAAILLLSGTKGKRYALPNSEVMIHQPHGGAQGQASDIAI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ R K++R+ TGQP+E+V+Q +RD ++SA EA+++G+ID I++
Sbjct: 140 TAKRIIGIREKLNRITVERTGQPLERVEQDMDRDTYMSAEEALQYGIIDQIIK 192
>gi|414153433|ref|ZP_11409759.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455112|emb|CCO07662.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 195
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG PI+ VA I+Q + L D + DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHVADLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G A+S + +LA G KG RYA+P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPPVSTICLGQASSMGSFLLAAGTKGKRYALPMARIMIHQPLGGVQGQATDIDI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQP+EKV + TERD F+SA EA ++G+ID ++
Sbjct: 140 HAKEILRMKDLLNEKLAYHTGQPLEKVARDTERDFFMSAEEAKQYGIIDEVM 191
>gi|301091655|ref|XP_002896007.1| ATP-dependent Clp protease proteolytic subunit, putative
[Phytophthora infestans T30-4]
gi|262095668|gb|EEY53720.1| ATP-dependent Clp protease proteolytic subunit, putative
[Phytophthora infestans T30-4]
Length = 221
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ +P G D+ S L + RI+F+ P+N +A +QL+ L + + + D+ M
Sbjct: 22 LVPMVLEQSPRGERVFDIYSRLLKERIVFVHGPVNDDMASLVTAQLLFLESENPEKDVHM 81
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + S LAIYD M +I+PKV T+C G AAS +++LAGG G R A+PNARIM+
Sbjct: 82 YINSPGGIVSSGLAIYDTMQYIQPKVNTLCMGQAASMGSLLLAGGASGCRSALPNARIMI 141
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+ Q E + R +++ +YA+ TG+P++ ++Q +RD F+ EA E
Sbjct: 142 HQPSGGAQGMASDIAIQAEEIIKLRTRLNGLYASHTGKPLKVIEQAMDRDLFMDPREAQE 201
Query: 260 FGLIDGIL 267
FG++D I+
Sbjct: 202 FGIVDSII 209
>gi|315645729|ref|ZP_07898853.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453]
gi|315279207|gb|EFU42517.1| hypothetical protein PVOR_09635 [Paenibacillus vortex V453]
Length = 196
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 115/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+ I+ VA I+QL+ LA D + DI +Y+N PGGS+ + + IY
Sbjct: 19 DIYSRLLKDRIIFLSSAIDDDVANLVIAQLLFLAAEDPEKDISLYINSPGGSVTAGMGIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS +++L G G RYA+ N+ +M++QP G G D++
Sbjct: 79 DTMQLIKPDVSTICVGMAASMGSLLLTAGAPGKRYALENSEVMIHQPLGGIQGQASDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ + +RHK++++Y TGQP+EK+++ T+RD F+SA EA +G+ID +L +
Sbjct: 139 HADWIIKTRHKLNQIYVERTGQPLEKIERDTDRDFFMSAEEAKAYGIIDDVLSS 192
>gi|392959640|ref|ZP_10325122.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans DSM 17108]
gi|421052494|ref|ZP_15515483.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelosinus
fermentans B4]
gi|421058665|ref|ZP_15521332.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans B3]
gi|421066386|ref|ZP_15528000.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A12]
gi|421070550|ref|ZP_15531682.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A11]
gi|392443225|gb|EIW20776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelosinus
fermentans B4]
gi|392448176|gb|EIW25379.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A11]
gi|392456193|gb|EIW32947.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans DSM 17108]
gi|392456278|gb|EIW33029.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A12]
gi|392460320|gb|EIW36635.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans B3]
Length = 201
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG PI+ VA I+QL+ L + D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIFSRLLKDRIIFIGGPIDDNVANLVIAQLLFLESEDPEKDIHVYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG RYA+P ARIM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICLGSAASMGALLLTAGAKGKRYALPYARIMIHQPLGGTQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R ++ + TGQ +K++ TERD F+SA +A E+GLID ++
Sbjct: 139 HAREILRLRELLNGILIQHTGQTKDKIEHDTERDFFMSAEQAKEYGLIDAVV 190
>gi|186475312|ref|YP_001856782.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phymatum STM815]
gi|184191771|gb|ACC69736.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phymatum STM815]
Length = 217
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 115/190 (60%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 15 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQSASLIVAQLLFLESENPDKDISF 74
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y LAI+D M +IKP V T+C G AAS +LA G G RYA+PNARIM+
Sbjct: 75 YINSPGGSVYDGLAIFDTMQFIKPDVSTLCTGFAASMGTFLLAAGAPGKRYALPNARIMI 134
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G DV+ E + R +++ + A TGQ I ++++ T+RD F+SA A
Sbjct: 135 HQPSGGGQGTASDVEIHAKEVLYLRERLNDVLAQRTGQSIAQIEKDTDRDNFMSAEAAKT 194
Query: 260 FGLIDGILET 269
+GL+D +L T
Sbjct: 195 YGLVDDVLTT 204
>gi|381158611|ref|ZP_09867844.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thiorhodovibrio sp. 970]
gi|380879969|gb|EIC22060.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thiorhodovibrio sp. 970]
Length = 232
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 114/174 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + R+IF+ P++ A ++Q++ L + + D DI Y+N PGGS+ + LAI
Sbjct: 45 FDIFSRLLKERVIFLVGPVDDHTANLVVAQMLFLESENPDKDIHFYINSPGGSVTAGLAI 104
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +I+P V T+C G AAS A++LAGG G R+ +P++R+M++QP G G D+
Sbjct: 105 YDTMCFIRPDVSTMCVGQAASMGALLLAGGTAGKRFCLPHSRMMIHQPLGGFQGQASDID 164
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + R +++R+++ TGQPIEK+ TERDRFL EA+++GLID +++
Sbjct: 165 IHAREILKIREQLNRIFSHHTGQPIEKIADDTERDRFLGGEEAVDYGLIDKVID 218
>gi|336322456|ref|YP_004602423.1| ATP-dependent Clp protease proteolytic subunit [Flexistipes
sinusarabici DSM 4947]
gi|336106037|gb|AEI13855.1| ATP-dependent Clp protease proteolytic subunit [Flexistipes
sinusarabici DSM 4947]
Length = 195
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI +A I+QL+ L D D DI +Y+N PGG I S LAI
Sbjct: 20 DIYSRLLKDRIIFMGTPIEDNLANTIIAQLLFLEADDPDKDIHLYINSPGGVITSGLAIL 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D +++IKP V T+C G AAS AA++LA G G RY++PNARIM++QP G G +D++
Sbjct: 80 DTINYIKPDVSTICLGQAASMAAVLLACGASGKRYSVPNARIMIHQPLGGFQGQAKDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + +I+ + A TG+P+E+++ ++RD F+S+ EA+++GLID ++
Sbjct: 140 HAKEILRMKARINEILAEKTGKPLEQIEADSDRDFFMSSEEALQYGLIDEVI 191
>gi|225389281|ref|ZP_03759005.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme
DSM 15981]
gi|225044660|gb|EEG54906.1| hypothetical protein CLOSTASPAR_03027 [Clostridium asparagiforme
DSM 15981]
Length = 193
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N + A ++QL+ L D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASLIVAQLLFLEAEDPGKDINLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G+AAS A +L+GG KG R+++PN++IM++QP G+ G ++K
Sbjct: 79 DTMNYIKSDVSTICIGMAASMGAFLLSGGAKGKRFSLPNSQIMIHQPSGGAQGQATEIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ ++ K++ + AA TG+P+E +++ TERD ++SA EA E+GLID I+
Sbjct: 139 VAENILKTKRKLNEILAANTGKPLEVIERDTERDYYMSAEEAREYGLIDQII 190
>gi|313680148|ref|YP_004057887.1| ATP-dependent clp protease proteolytic subunit clpp [Oceanithermus
profundus DSM 14977]
gi|313152863|gb|ADR36714.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oceanithermus
profundus DSM 14977]
Length = 194
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 118/175 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+S VA ++Q++ L + + +I +Y+N PGG +Y+ LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDSQVANTIVAQMLFLEAQNPNQEIKLYINSPGGDVYAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+ G+AAS A +LA GE G RYA+P+AR+M++QP G+ G D+
Sbjct: 78 DTMQYVKSPVATIVVGMAASMGAFLLAAGEAGQRYALPHARVMIHQPWGGAQGQATDIAI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q + + S+ ++ + A TGQP+EKV+ ++RD +++A EA ++GL+D ++ E
Sbjct: 138 QAEQILKSKKLLNELLAKHTGQPVEKVEADSDRDFWMTADEARDYGLVDRVIARE 192
>gi|170760538|ref|YP_001788551.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A3 str. Loch Maree]
gi|226706446|sp|B1L1D7.1|CLPP_CLOBM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|169407527|gb|ACA55938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum A3 str. Loch Maree]
Length = 194
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 112/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + + +N A ++QL+ L D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG RYA+PN+ +M++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLVAGAKGKRYALPNSEVMIHQPLGGFQGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ + K++ + + TG+P+E+V+ TERD FLSA EA E+GLID +++ +
Sbjct: 139 HAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYGLIDEVIDKK 193
>gi|298491692|ref|YP_003721869.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
azollae' 0708]
gi|298233610|gb|ADI64746.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
azollae' 0708]
Length = 232
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 121/191 (63%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDNVANSIVAQLLFLDAEDSGKDIQL 88
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMI 148
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++++ A TGQP+++++ TERD F+SA EA
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKGNLNQLMAKHTGQPLDRIEADTERDFFMSAEEAKN 208
Query: 260 FGLIDGILETE 270
+GLID ++ +
Sbjct: 209 YGLIDQVISRQ 219
>gi|375088858|ref|ZP_09735196.1| ATP-dependent Clp protease proteolytic subunit [Dolosigranulum
pigrum ATCC 51524]
gi|374561823|gb|EHR33162.1| ATP-dependent Clp protease proteolytic subunit [Dolosigranulum
pigrum ATCC 51524]
Length = 197
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 126/190 (66%), Gaps = 4/190 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ +P G D+ S L ++RII IG I++ A +SQL+ L D DI +
Sbjct: 3 LVPTVIEQSPRGERAYDIYSRLLKDRIIMIGDAIDNNTANSVVSQLLFLDAQDSTKDIYL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M++IK V T+ G++AS AI+ + G KG R+A+PNA +M+
Sbjct: 63 YINSPGGSVTAGLAIYDTMNFIKADVQTIVLGLSASMGAILSSSGAKGKRFALPNAELMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ + +R +++++ A TGQP+E+VQ+ T+RD F++A EA+E
Sbjct: 123 HQPLGGAQGQATEIEIAAKNILRTRERLNKILADKTGQPLERVQKDTDRDNFMTAEEALE 182
Query: 260 FGLIDGILET 269
+GLID I+++
Sbjct: 183 YGLIDEIMDS 192
>gi|288818082|ref|YP_003432430.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
thermophilus TK-6]
gi|384128847|ref|YP_005511460.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobacter thermophilus TK-6]
gi|288787482|dbj|BAI69229.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
thermophilus TK-6]
gi|308751684|gb|ADO45167.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobacter thermophilus TK-6]
Length = 199
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L D + DI M
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDPEKDIYM 67
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G AAS A++LA G G RYA+P++RIM+
Sbjct: 68 YINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMGAVLLAAGAPGKRYALPHSRIMI 127
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E +H ++ + + TGQP+E++++ ERD F+S+ EA E
Sbjct: 128 HQPLGGITGQATDIIIHAEEIKRIKHMLNEILSKHTGQPLERIERDVERDYFMSSEEARE 187
Query: 260 FGLIDGIL 267
+G++D ++
Sbjct: 188 YGIVDRVI 195
>gi|242053033|ref|XP_002455662.1| hypothetical protein SORBIDRAFT_03g018270 [Sorghum bicolor]
gi|241927637|gb|EES00782.1| hypothetical protein SORBIDRAFT_03g018270 [Sorghum bicolor]
Length = 313
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 115/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD S++L R RI+F+G ++ A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 75 LDTSNMLLRQRIVFLGSSVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGV 134
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M + K V TVCFG+AAS A +LA G KG RY MPNARIM++QP G+GG V ++
Sbjct: 135 YDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARIMIHQPSGGAGGKVTEMG 194
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q+ E + + KI+++ + TG+ E++ + T+ D F+S EA ++G++D I++
Sbjct: 195 LQIREMMYEKIKINKIMSRITGKSKEQIDEDTKFDYFMSPWEAKDYGIVDSIID 248
>gi|22298615|ref|NP_681862.1| ATP-dependent Clp protease proteolytic subunit [Thermosynechococcus
elongatus BP-1]
gi|34222549|sp|Q8DJZ9.1|CLPP2_THEEB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|22294795|dbj|BAC08624.1| ATP-dependent Clp protease proteolytic subunit 2
[Thermosynechococcus elongatus BP-1]
Length = 198
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 122/182 (67%), Gaps = 4/182 (2%)
Query: 91 PGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG 146
PG P +D+ + L+R RIIF+G+ ++ +A + ++ ++ L + D DI++Y+N PGG
Sbjct: 13 PGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPGG 72
Query: 147 SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 206
S+ + +AIYD M IK V T+C G+AAS + +LA G KG R A+P++RIM++QP G+
Sbjct: 73 SVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGT 132
Query: 207 GGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGI 266
G D++ + E + R +++ +YA TGQP+EK+++ +RD F+SA EA +GLID +
Sbjct: 133 RGQATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLIDRV 192
Query: 267 LE 268
+E
Sbjct: 193 IE 194
>gi|153871192|ref|ZP_02000426.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
gi|152072341|gb|EDN69573.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
Length = 228
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 114/176 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+ A ++QL+ L + + + DI +Y+N PGGS+ + LAIY
Sbjct: 38 DIYSRLLKERVIFLVGPVEDYTANLVVAQLLFLESENPEKDIHLYINSPGGSVSAGLAIY 97
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L+GG RY +P++RIM++QP G G D+
Sbjct: 98 DTMQFIKPDVSTLCIGQAASMGALLLSGGADKKRYCLPHSRIMIHQPLGGFQGQATDIDI 157
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
E + R +++ + A +GQP+EK+Q+ TERD F++A A+E+GL+D +L T +
Sbjct: 158 HAREILKVRERLNEILAKHSGQPLEKIQKDTERDNFMAAETAVEYGLVDAVLSTRH 213
>gi|313894919|ref|ZP_07828479.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 137 str. F0430]
gi|402301976|ref|ZP_10821097.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC9]
gi|312976600|gb|EFR42055.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 137 str. F0430]
gi|400381261|gb|EJP34064.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC9]
Length = 205
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ +K+ TERD F+SA EA +GLID ++
Sbjct: 140 QAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAEEAKAYGLIDEVV 191
>gi|154482729|ref|ZP_02025177.1| hypothetical protein EUBVEN_00406 [Eubacterium ventriosum ATCC
27560]
gi|149736324|gb|EDM52210.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium ventriosum ATCC 27560]
Length = 193
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 118/173 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ IN VA ++QL+ L + D DI MY+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEINDAVASTVVAQLLFLESEDPGKDIHMYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+++K V T C G+AAS A +L+ G KG RYA+PNA +M++QP G+ G +++
Sbjct: 79 DTMNYVKCDVSTTCIGMAASMGAFLLSSGAKGKRYALPNAEVMIHQPLGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++++ A G+P+E+V++ T+RD +LSA EA E+GLID +++
Sbjct: 139 AAEHILKTKKKLNQILADNAGKPVEEVEKDTDRDNWLSADEAKEYGLIDEVIK 191
>gi|357419906|ref|YP_004932898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovirga
lienii DSM 17291]
gi|355397372|gb|AER66801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovirga
lienii DSM 17291]
Length = 192
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RI+FIG+ I+ +A ++QL+ L + D + D+ +
Sbjct: 2 LIPMVIEQTGRGERAYDIYSRLLKDRIVFIGEAIDDHLANLVVAQLLFLESEDPEKDVYV 61
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG I S LAIYD M +IK V T+C G AAS AA++LAGGE G R A+P+ARIML
Sbjct: 62 YINSPGGVITSGLAIYDTMQYIKCPVSTICIGQAASMAAVLLAGGEPGKRIALPSARIML 121
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ E + + +++ + T QP EK++ T+RD F+SA EA E
Sbjct: 122 HQPLGGAQGQAVDIEIHAREILRLKERLNDILTYHTKQPREKIEADTDRDFFMSAEEAKE 181
Query: 260 FGLIDGILE 268
+G+ID ++E
Sbjct: 182 YGIIDQVIE 190
>gi|332296030|ref|YP_004437953.1| ATP-dependent Clp protease proteolytic subunit [Thermodesulfobium
narugense DSM 14796]
gi|332179133|gb|AEE14822.1| ATP-dependent Clp protease proteolytic subunit [Thermodesulfobium
narugense DSM 14796]
Length = 199
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L +RIIF+G IN VA ++Q++ L D + DI +Y+N PGG + + LAIY
Sbjct: 24 DIYSKLLNDRIIFLGTAINEDVANLVVAQMLFLEADDPNRDIYLYINSPGGIVTAGLAIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+CFG AAS AA+ILA GE+G RY +PN+R++++QP G+ G D+
Sbjct: 84 DTMQYVKSPVNTICFGQAASMAAVILAAGERGKRYCLPNSRVLIHQPLGGAEGQATDIAI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + ++++ A TG+ I K++ TERD ++ A +A E+G++D ILE
Sbjct: 144 QAKEILKVKDTLNQILAKHTGKNITKIKNDTERDFYMDAKQAKEYGIVDEILE 196
>gi|320530213|ref|ZP_08031283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
artemidis F0399]
gi|320137646|gb|EFW29558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
artemidis F0399]
Length = 199
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKERIIFLGGPIDDNVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ +K+ TERD F+SA EA +GLID ++
Sbjct: 134 QAKEILRLREVGNEILARHTGQDTDKINVDTERDNFMSAEEAKAYGLIDEVV 185
>gi|302335570|ref|YP_003800777.1| ATP-dependent Clp protease proteolytic subunit ClpP [Olsenella uli
DSM 7084]
gi|301319410|gb|ADK67897.1| ATP-dependent Clp protease proteolytic subunit ClpP [Olsenella uli
DSM 7084]
Length = 204
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 123/191 (64%), Gaps = 4/191 (2%)
Query: 83 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ TP G D+ S L +RI+F+G+ I A I+QL+ L + D D DI
Sbjct: 8 PLIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEITRDSANLVIAQLLHLESQDPDKDIS 67
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y++ PGG +Y+ L I D M++IKP V T+C G+AAS A+++LA G G R A+PN+ IM
Sbjct: 68 LYIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMAASMASVLLAAGTPGKRLALPNSMIM 127
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP SG+ G D++ +E R+ ++ + A +TGQ +EK+ TERD +L A+EA
Sbjct: 128 IHQPSSGAQGQQTDIQIVADETKWIRNHMNELLAQYTGQSVEKINADTERDNYLRASEAA 187
Query: 259 EFGLIDGILET 269
+GL+D ++ +
Sbjct: 188 AYGLVDKVISS 198
>gi|299143348|ref|ZP_07036428.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
sp. oral taxon 386 str. F0131]
gi|298517833|gb|EFI41572.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
sp. oral taxon 386 str. F0131]
Length = 194
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 116/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ IN + A ++QL+ L D++ DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLSGEINDVTADLVVAQLLFLEAEDQNKDIQIYINSPGGSVSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + +IK V T+ G+AAS A +LA G KG R+A+PNA IM++QP G+ G D+K
Sbjct: 79 DTIKYIKCDVSTMVIGLAASMGAFLLAAGTKGKRFALPNADIMIHQPLGGAQGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R +I+++ + TGQP+EKV++ T+RD +LSA EA+E+GLID ++E
Sbjct: 139 HAEKILEIRERINKILSEETGQPLEKVERDTDRDYYLSAKEAVEYGLIDKVIE 191
>gi|352085686|ref|ZP_08953277.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
sp. 2APBS1]
gi|389798002|ref|ZP_10201030.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter sp.
116-2]
gi|351681627|gb|EHA64751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
sp. 2APBS1]
gi|388445897|gb|EIM01950.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter sp.
116-2]
Length = 209
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ +N VA ++Q++ L + + D DI Y+N PGG++ + LAIY
Sbjct: 27 DIYSRLLKERVIFLVGEVNDQVANLIVAQMLFLESENPDKDINFYINSPGGAVTAGLAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G A S + +L G KG R+A+PN+R+M++QP G+ G D++
Sbjct: 87 DTMQFIKPNVSTMCIGQACSMGSFLLMAGAKGKRFALPNSRVMIHQPSGGAQGQATDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R +++++Y TGQ +EK++ ERDRF+SAA+A +GLID +L+
Sbjct: 147 QAREILYIRERLNKLYVQHTGQTLEKIELDMERDRFMSAADAKAYGLIDEVLD 199
>gi|336124548|ref|YP_004566596.1| ClpP [Vibrio anguillarum 775]
gi|365538382|ref|ZP_09363557.1| ATP-dependent Clp protease proteolytic subunit [Vibrio ordalii ATCC
33509]
gi|335342271|gb|AEH33554.1| ClpP [Vibrio anguillarum 775]
Length = 208
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVL 203
>gi|73541074|ref|YP_295594.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
JMP134]
gi|124013825|sp|Q472D3.1|CLPP_RALEJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|72118487|gb|AAZ60750.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ralstonia
eutropha JMP134]
Length = 216
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M ++KP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFVKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + + TGQP+EK+ + T+RD F+S +A++
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQAVD 204
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 205 YGLIDKVI 212
>gi|350566316|ref|ZP_08935001.1| ATP-dependent Clp protease, protease subunit [Peptoniphilus
indolicus ATCC 29427]
gi|348662942|gb|EGY79570.1| ATP-dependent Clp protease, protease subunit [Peptoniphilus
indolicus ATCC 29427]
Length = 194
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RIIF+ IN VA ++QL+ L D DI +
Sbjct: 3 LVPMVVEQTGRGERSYDIYSRLLKERIIFLTGEINDQVADLVVAQLLFLEAEDNTKDIQI 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + AIYD M +IK V T+C G+AAS A +L G KG R+A+PNA IM+
Sbjct: 63 YINSPGGSVSAGFAIYDTMQYIKCDVSTICMGMAASMGAFLLIAGTKGKRFALPNADIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+K Q + + R +++++ + TGQP++K++ T+RD +L+A EA+E
Sbjct: 123 HQPLGGAQGQATDIKIQAEKILKVRERLNKILSERTGQPLDKIELDTDRDYYLTADEALE 182
Query: 260 FGLIDGILE 268
+G+ID ++E
Sbjct: 183 YGIIDKVIE 191
>gi|159465361|ref|XP_001690891.1| active subunit of the chloroplast ClpP complex [Chlamydomonas
reinhardtii]
gi|158279577|gb|EDP05337.1| active subunit of the chloroplast ClpP complex [Chlamydomonas
reinhardtii]
Length = 256
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 125/199 (62%), Gaps = 6/199 (3%)
Query: 75 ISGKNDNPPLMPAVMTPGGPLDLS------SVLFRNRIIFIGQPINSMVAQRAISQLVTL 128
+S +N +PP++ P PL + S LF+ RI+ +G ++ +A ++QL+ L
Sbjct: 43 VSSRNPHPPVVCQGPPPPNPLVIERFQGVVSQLFQQRIVRLGGAVDDDMANLLVAQLLYL 102
Query: 129 ATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGM 188
++D DI MY+N PGGS+ + +A++D M I+P V T C G+AAS A ILA G+ G
Sbjct: 103 DSVDNKRDITMYVNSPGGSVTAGMAVFDTMRHIRPDVSTCCIGLAASMGAFILASGQAGK 162
Query: 189 RYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 248
RY++PN+RIM++QP G+ G D++ Q NE + + ++ A FTGQ +E + + T+R
Sbjct: 163 RYSLPNSRIMIHQPLGGAQGQATDIEIQANEILHHKLTLNGYLAQFTGQSMETITKDTDR 222
Query: 249 DRFLSAAEAMEFGLIDGIL 267
D F+S EA+E+GL+D I+
Sbjct: 223 DFFMSPQEAIEYGLVDAII 241
>gi|119485223|ref|ZP_01619608.1| Peptidase S14, ClpP [Lyngbya sp. PCC 8106]
gi|119457451|gb|EAW38576.1| Peptidase S14, ClpP [Lyngbya sp. PCC 8106]
Length = 238
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 131/217 (60%), Gaps = 6/217 (2%)
Query: 58 LKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPI 113
+ + +DF S S K I N ++P V+ G DL S L R+RIIF+G I
Sbjct: 12 VSFNNRDFQSV--SQKEIHSTNPANVMIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTAI 69
Query: 114 NSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173
+ +A +Q++ L D + DI +Y+N PGGS+ + + IYD + ++P V T+C+G+A
Sbjct: 70 DDEIANAVSAQMLFLDAEDPEKDIQLYINSPGGSVTAGMGIYDTIQQVRPDVVTICYGLA 129
Query: 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAA 233
AS A +L+ G KG R ++PN+R+M++QP G+ G D++ Q E + + ++ + A
Sbjct: 130 ASMGAFLLSSGTKGKRMSLPNSRVMIHQPLGGTQGQAVDIEIQAREILYHKRILNEILAQ 189
Query: 234 FTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
TGQPIE+++ TERD F+SA E+ E+GLID ++ +
Sbjct: 190 NTGQPIERIEVDTERDFFMSAEESKEYGLIDQVISKQ 226
>gi|255644732|gb|ACU22868.1| unknown [Glycine max]
Length = 270
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 113/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RIIF+G ++ M A ISQL+ L D DI +++N PGGS+ + + I
Sbjct: 79 LDATNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINSPGGSVTAGMGI 138
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A ILA G KG RY MPN+R+M++QP +GG ++
Sbjct: 139 YDAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATEMS 198
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + KI+++ + TG+P E+++ T+RD F++ EA E+GL+DG+++
Sbjct: 199 IRIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVID 252
>gi|169824905|ref|YP_001692516.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna
ATCC 29328]
gi|297587291|ref|ZP_06945936.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna
ATCC 53516]
gi|302379561|ref|ZP_07268046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
magna ACS-171-V-Col3]
gi|303234189|ref|ZP_07320835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
magna BVS033A4]
gi|417926693|ref|ZP_12570084.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
magna SY403409CC001050417]
gi|167831710|dbj|BAG08626.1| ATP-dependent protease Clp proteolytic subunit [Finegoldia magna
ATCC 29328]
gi|297575272|gb|EFH93991.1| ATP-dependent Clp protease proteolytic subunit [Finegoldia magna
ATCC 53516]
gi|302312468|gb|EFK94464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
magna ACS-171-V-Col3]
gi|302494730|gb|EFL54490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
magna BVS033A4]
gi|341588445|gb|EGS31843.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Finegoldia
magna SY403409CC001050417]
Length = 195
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 119/192 (61%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P L+P V+ D+ S L + RIIF+ +N +A I+QL+ L + D DI
Sbjct: 2 PSLVPMVVEQSNRGERSYDIFSRLLKERIIFVTGEVNDQMADLVIAQLLFLESEDPKKDI 61
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M ++KP V T+C G+AAS AI+L G KG RYA+PNA
Sbjct: 62 QLYINSPGGSVSAGLAIYDTMQYVKPDVSTICVGMAASMGAILLTSGAKGKRYALPNADT 121
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+++QP G+ G D++ + R ++++ + TGQP+EK+++ T+RD L+A EA
Sbjct: 122 LIHQPLGGAQGQASDIEIHAKNILKKRELLNKILSERTGQPLEKIERDTDRDFILTAEEA 181
Query: 258 MEFGLIDGILET 269
E+GLID ++ T
Sbjct: 182 KEYGLIDEVIYT 193
>gi|389806651|ref|ZP_10203698.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter
thiooxydans LCS2]
gi|388445303|gb|EIM01383.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter
thiooxydans LCS2]
Length = 209
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R++F+ +N VA ++Q++ L + + D DI Y+N PGG++ + LAIY
Sbjct: 27 DIYSRLLKERVVFLVGEVNDQVANLIVAQMLFLESENPDKDINFYINSPGGAVTAGLAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G A S + +L G KG R+A+PN+R+M++QP G+ G D++
Sbjct: 87 DTMQFIKPNVSTMCIGQACSMGSFLLMAGAKGKRFALPNSRVMIHQPSGGAQGQATDIEI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R +++++Y TGQ +EK++ ERDRF+SAA+A +GLID +L+
Sbjct: 147 QAREILYIRERLNKLYVQHTGQTLEKIEADMERDRFMSAADAKAYGLIDEVLD 199
>gi|332376543|gb|AEE63411.1| unknown [Dendroctonus ponderosae]
Length = 232
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RII + PIN ++ ++QL+ L + + I MY+N PGGS+ + L IY
Sbjct: 42 DIYSRLLKERIICLMGPINDAMSSLIVAQLLFLQSESTNKAIHMYINSPGGSVTAGLGIY 101
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I P V T C G AAS A+++LA G GMR+++PNARIM++QP G+ G D+K
Sbjct: 102 DTMQYILPPVATWCVGQAASMASLLLASGTPGMRHSLPNARIMIHQPSGGAQGQATDIKI 161
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + +++I+ +YA T QP+EK+++ ERD F+S AEA FG+ID IL
Sbjct: 162 QAEEIIKLKNQINALYARHTTQPLEKIERNMERDTFMSPAEAQSFGIIDKIL 213
>gi|303229413|ref|ZP_07316203.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
atypica ACS-134-V-Col7a]
gi|303231336|ref|ZP_07318070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
atypica ACS-049-V-Sch6]
gi|401680587|ref|ZP_10812502.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella sp. ACP1]
gi|429760069|ref|ZP_19292559.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella atypica KON]
gi|302513932|gb|EFL55940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
atypica ACS-049-V-Sch6]
gi|302515949|gb|EFL57901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
atypica ACS-134-V-Col7a]
gi|400218495|gb|EJO49375.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella sp. ACP1]
gi|429178474|gb|EKY19752.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella atypica KON]
Length = 197
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG R+A+P+AR+M++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRFALPHARVMIHQPLGGVQGQASEIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++ + AA +GQ IE V + T+RD F+SA +A+E+GLID +L
Sbjct: 138 HAREILRMREELNGILAARSGQDIEVVARDTDRDNFMSAQDAVEYGLIDEVL 189
>gi|434393186|ref|YP_007128133.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
gi|428265027|gb|AFZ30973.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
Length = 197
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 120/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ + L+R RIIF+G+ ++ +A + I+ ++ L + D DI +Y+N PGG + S +AI
Sbjct: 21 IDIYNRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGMAI 80
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M IK V T+C G+AAS + +LA G KG R A+P++RIM++QP G+ G D++
Sbjct: 81 YDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIE 140
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ E + RH+++++YA TGQP+EK+++ +RD F+SA EA ++GLID ++E
Sbjct: 141 IEAREILRIRHQLNQIYADNTGQPLEKIEKDMDRDFFMSAEEAKQYGLIDKVIE 194
>gi|374604088|ref|ZP_09677057.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
dendritiformis C454]
gi|374390261|gb|EHQ61614.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
dendritiformis C454]
Length = 191
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ + I +A ++QL+ LA D D DI MY+N PGGS+ + +IY
Sbjct: 19 DIYSRLLKDRIVMVSGEIEDQMANSVVAQLLFLAAEDSDKDIQMYINSPGGSVTAGFSIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A++L GG KG R ++ N+ +M++QP G G D++
Sbjct: 79 DTMQFIKPDVSTICIGMAASFGAMLLTGGAKGKRMSLANSEVMIHQPLGGVRGQASDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++R+ + TGQPIE+++Q T+RDRF+ A EA+ +G+ID I+
Sbjct: 139 HAEWILSTRRKVNRILSEHTGQPIERIEQDTDRDRFMDAKEALAYGIIDKII 190
>gi|94987236|ref|YP_595169.1| protease subunit of ATP-dependent Clp proteases [Lawsonia
intracellularis PHE/MN1-00]
gi|442556076|ref|YP_007365901.1| ATP-dependent Clp protease, proteolytic subunit [Lawsonia
intracellularis N343]
gi|116243147|sp|Q1MQ79.1|CLPP_LAWIP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|94731485|emb|CAJ54848.1| Protease subunit of ATP-dependent Clp proteases [Lawsonia
intracellularis PHE/MN1-00]
gi|441493523|gb|AGC50217.1| ATP-dependent Clp protease, proteolytic subunit [Lawsonia
intracellularis N343]
Length = 209
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ +G +N VA +QL+ L + D + +I +Y+N PGGS+ + LAIY
Sbjct: 24 DIYSRLLKDRIVLLGTEVNDQVASLICAQLLFLESQDPEKEIYLYINSPGGSVTAGLAIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++I P V TVC G AAS A++LA GEK MRYA+PN+++M++QP G G D+
Sbjct: 84 DTMNYITPNVATVCMGRAASMGALLLAAGEKNMRYALPNSQVMIHQPLGGYQGQATDIDI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++ + TGQ +EKV Q TERD F++A +A +GLID +L
Sbjct: 144 HAREILRMRQRLNEILMEQTGQSLEKVAQDTERDYFMTAEDAKAYGLIDKVL 195
>gi|157374680|ref|YP_001473280.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
sediminis HAW-EB3]
gi|189082467|sp|A8FTH9.1|CLPP_SHESH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157317054|gb|ABV36152.1| Endopeptidase Clp [Shewanella sediminis HAW-EB3]
Length = 203
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGG +G R+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + ++K+++M A TGQP+E +++ T+RD F+SAAEA E+GL+D +L
Sbjct: 148 HAQEILGIKNKLNQMLADHTGQPMEIIERDTDRDNFMSAAEAAEYGLVDSVL 199
>gi|374339257|ref|YP_005095993.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinitoga
piezophila KA3]
gi|372100791|gb|AEX84695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinitoga
piezophila KA3]
Length = 198
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L ++RIIF+G +N V+ ++Q++ L D + DI +Y
Sbjct: 5 IPVVVESSGRYERAYDIYSRLLKDRIIFLGSEVNDYVSNLIVAQMLFLEAQDPEKDIYLY 64
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGSI + LAIYD M +IKP V T+C G AAS A++L G KG R+A+PN+RIM++
Sbjct: 65 INSPGGSITAGLAIYDTMQYIKPDVSTICIGQAASMGAVLLTAGAKGKRFALPNSRIMIH 124
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G +D++ Q E + + ++++ + TG+ + ++++ +RD F+SA EA E+
Sbjct: 125 QPWGGAQGTAKDIEIQAQEILRMKKMLNKILSEHTGKDVSQIEKDADRDFFMSAEEAKEY 184
Query: 261 GLIDGILET 269
GLID ++++
Sbjct: 185 GLIDKVIKS 193
>gi|356499630|ref|XP_003518640.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 3,
chloroplastic-like [Glycine max]
Length = 319
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 113/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RIIF+G ++ M A ISQL+ L D DI +++N PGGS+ + + I
Sbjct: 79 LDATNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINSPGGSVTAGMGI 138
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A ILA G KG RY MPN+R+M++QP +GG ++
Sbjct: 139 YDAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATEMS 198
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + KI+++ + TG+P E+++ T+RD F++ EA E+GL+DG+++
Sbjct: 199 IRIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVID 252
>gi|395493607|ref|ZP_10425186.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas sp.
PAMC 26617]
gi|404253934|ref|ZP_10957902.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas sp.
PAMC 26621]
Length = 233
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 114/174 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIFI + +A +QL+ L + + DI MY+N PGG + + +AI
Sbjct: 42 FDIYSRLLRERIIFITGGVEDHMASVISAQLLFLESENPKKDIFMYINSPGGVVTAGMAI 101
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P+VGTVC G AAS + +LA GE GMR A+ NARIM++QP G+ G D++
Sbjct: 102 HDTMQYIRPRVGTVCMGQAASMGSFLLAAGEPGMRVALTNARIMIHQPSGGAQGMASDIQ 161
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E +++++ +YA +TG+PIE++++ +RD FL A EA EFGL+D + +
Sbjct: 162 IQAKEIQRIKNRMNALYAQYTGKPIEEIERAMDRDTFLEAHEAKEFGLVDQVFD 215
>gi|289422712|ref|ZP_06424552.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Peptostreptococcus anaerobius 653-L]
gi|289156891|gb|EFD05516.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Peptostreptococcus anaerobius 653-L]
Length = 194
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 118/188 (62%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+G +N A ++Q++ L D D DI +
Sbjct: 3 LVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDQTASLVVAQMLFLEADDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IK V T+C G+AAS A +LA G KG RYA+PN+ +M+
Sbjct: 63 YINSPGGSVTAGMAIYDTMQYIKADVSTICVGMAASMGAFLLAAGAKGKRYALPNSTVMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + + K++++ A TGQ +E V+ TERD F++A EA +
Sbjct: 123 HQPLGGTRGQATDIEIHTKYLLSIKEKLNKILAERTGQDLETVKANTERDNFMTADEARD 182
Query: 260 FGLIDGIL 267
FGLID ++
Sbjct: 183 FGLIDEVI 190
>gi|399050842|ref|ZP_10740886.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
gi|433542108|ref|ZP_20498542.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
gi|398051558|gb|EJL43880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
gi|432186623|gb|ELK44090.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
Length = 193
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 18 DIYSRLLKDRIILLGTEIDDEVANLVVAQLLFLQAEDPEKDISLYINSPGGSVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G G ED++
Sbjct: 78 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGVRGQAEDIRI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ +++++ + TGQP E+V+ T+RD F+SA EA +GLID I+E
Sbjct: 138 HAEWILKTKRQLNQILSERTGQPYERVELDTDRDNFMSAEEAKAYGLIDTIIE 190
>gi|428217239|ref|YP_007101704.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
sp. PCC 7367]
gi|427989021|gb|AFY69276.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
sp. PCC 7367]
Length = 232
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 115/173 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+G ++ +A +SQL+ L D + DI +Y+N PGGS+ + +AI
Sbjct: 47 FDIYSRLLRERIVFLGTQVDDNLASLIMSQLLFLEAEDPEKDIYLYINSPGGSVTAGMAI 106
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD + ++P V T+C G+AAS A +L+ G KG R A+PNARIM++QP G+ G D++
Sbjct: 107 YDTLQHVQPDVSTICMGLAASMGAFLLSAGAKGKRMALPNARIMIHQPLGGARGQAVDIE 166
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + ++ ++++ A TGQ +++++ TERD F+S AEA E+GLID +L
Sbjct: 167 IQAKEILYHKNTLNQLLAEHTGQSLDRIEADTERDFFMSPAEAKEYGLIDTVL 219
>gi|58337015|ref|YP_193600.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
acidophilus NCFM]
gi|227903577|ref|ZP_04021382.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
acidophilus ATCC 4796]
gi|67460152|sp|Q5FL55.1|CLPP_LACAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|58254332|gb|AAV42569.1| ATP-dependent Clp protease P [Lactobacillus acidophilus NCFM]
gi|227868464|gb|EEJ75885.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
acidophilus ATCC 4796]
Length = 195
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP+EK+Q+ TERD +L+A EA E+GLID I+
Sbjct: 138 AANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKEYGLIDEIM 189
>gi|357009842|ref|ZP_09074841.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
elgii B69]
Length = 192
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I+ VA +QL+ L+ D + DI +Y+N PGGS + AIY
Sbjct: 19 DIYSRLLKDRIVFLGSEIDDQVANSITAQLLLLSAEDPEKDIHLYINSPGGSTTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS AA++L G KG R+A+PNA +M++QP G G D+K
Sbjct: 79 DTMQFIKPDVSTICVGFAASFAAVLLVAGAKGKRFALPNAEVMIHQPWGGMKGQASDMKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +R +++R+ + +GQP+EKV + +RD FLSA +A+ +GLID +++
Sbjct: 139 HADRFLDTRDRLNRIVSERSGQPLEKVARDMDRDYFLSADDAVTYGLIDKVMQ 191
>gi|161507214|ref|YP_001577168.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
helveticus DPC 4571]
gi|172048207|sp|A8YUD9.1|CLPP_LACH4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|160348203|gb|ABX26877.1| ATP-dependent Clp protease P [Lactobacillus helveticus DPC 4571]
Length = 194
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP+EK+Q+ TERD +L+A EA E+GLID I+
Sbjct: 138 AANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKEYGLIDEIM 189
>gi|296112317|ref|YP_003626255.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis RH4]
gi|295920011|gb|ADG60362.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BBH18]
Length = 217
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 122/192 (63%), Gaps = 4/192 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L R R+IF+ + +A ++QL+ L + + D
Sbjct: 20 NNALVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPEKD 79
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGG + + +AIYD M++IKP V T+C G AAS + +L+ GEKG RYA+ N+R
Sbjct: 80 IHLYINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEKGKRYALANSR 139
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
+M++QP G G D++ E + + K++R+ A TGQPIEK+++ T+RD F+SA +
Sbjct: 140 VMIHQPLGGFRGQASDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDTDRDHFMSAEQ 199
Query: 257 AMEFGLIDGILE 268
A ++GL+D +L+
Sbjct: 200 ARDYGLVDVVLD 211
>gi|388495948|gb|AFK36040.1| unknown [Lotus japonicus]
Length = 324
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 113/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G ++ M A ISQL+ L D DI +++N PGGS+ + + I
Sbjct: 83 LDTTNMLLRQRIVFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINSPGGSVTTGMGI 142
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A ILA G KG RY MPN+R+M++QP +GG ++
Sbjct: 143 YDAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATEMS 202
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + KI+++ + TG+P E+++ T+RD F++ EA E+GL+DG+++
Sbjct: 203 IRIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVID 256
>gi|317486004|ref|ZP_07944859.1| Clp protease [Bilophila wadsworthia 3_1_6]
gi|345887722|ref|ZP_08838886.1| ATP-dependent Clp protease proteolytic subunit [Bilophila sp.
4_1_30]
gi|316922777|gb|EFV44008.1| Clp protease [Bilophila wadsworthia 3_1_6]
gi|345041509|gb|EGW45656.1| ATP-dependent Clp protease proteolytic subunit [Bilophila sp.
4_1_30]
Length = 207
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ +G +N VA +QL+ L + D + +I +Y+N PGGS+ + +AIY
Sbjct: 24 DIFSRLLKDRIVLLGSEVNDAVASLICAQLLFLESQDPEKEIYLYINSPGGSVTAGMAIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++I P + TVC G AAS A +L+ G+KGMRYA+PN+++M++QP G G D+
Sbjct: 84 DTMNYITPPIATVCMGRAASMGAFLLSAGQKGMRYALPNSQVMIHQPLGGFQGQATDIDI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R ++ + A TGQPIEK+ Q TERD F++A A +GL+D +L
Sbjct: 144 HAREILRMRETLNGLLAKHTGQPIEKIAQDTERDNFMTAEMAQAYGLVDKVL 195
>gi|428297818|ref|YP_007136124.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
gi|428234362|gb|AFZ00152.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
Length = 201
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ I+S VA ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERILFLGQAIDSNVANLIVAQLLYLDSEDSEKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQP EK+ + TERD F+S EA
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEYLADHTGQPFEKISEDTERDFFMSPEEAKN 180
Query: 260 FGLIDGILE 268
+G+ID +++
Sbjct: 181 YGIIDEVID 189
>gi|292493106|ref|YP_003528545.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
halophilus Nc4]
gi|291581701|gb|ADE16158.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
halophilus Nc4]
Length = 203
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R++F+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + L++Y
Sbjct: 24 DIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGLSVY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP + T+C G AAS A++LAGG +G R+ +P++R++++QP G G D+
Sbjct: 84 DTMQFIKPDISTLCIGQAASMGAVLLAGGTQGKRHCLPHSRLLIHQPLGGFQGQAADIDI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E ++ R +++ + A TGQPIEK+Q+ T+RD F+SA E++ +GL+D +L+
Sbjct: 144 HAREIMLVRERLNHILAKHTGQPIEKIQRDTDRDYFMSANESVAYGLVDSVLQ 196
>gi|224475912|ref|YP_002633518.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
carnosus subsp. carnosus TM300]
gi|254763800|sp|B9DJL4.1|CLPP_STACT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|222420519|emb|CAL27333.1| putative ATP-dependent Clp protease proteolytic subunit
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 194
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +R K++++ A TGQ IE++++ T+RD FL+A EA E+GLID +++ E
Sbjct: 139 AATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEAKEYGLIDEVMQPE 193
>gi|427707070|ref|YP_007049447.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc sp. PCC
7107]
gi|427359575|gb|AFY42297.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc sp. PCC
7107]
Length = 201
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ I+S +A ++Q++ L D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQIDSNLANLIVAQMLFLDAEDPEKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQPIE++ + TERD F+S EA E
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDFLAEHTGQPIERIAEDTERDFFMSPDEARE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|160331468|ref|XP_001712441.1| clpP2 [Hemiselmis andersenii]
gi|159765889|gb|ABW98116.1| clpP2 [Hemiselmis andersenii]
Length = 233
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 120/186 (64%), Gaps = 4/186 (2%)
Query: 87 AVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 142
A PG P +D+ + L+R RIIF+GQ I+ +A + I+ ++ L + D I +Y+N
Sbjct: 44 AYRVPGAPSADWVDIYNRLYRERIIFLGQEIDDEIANQIIAVMLYLDSEDNSKPIYLYIN 103
Query: 143 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 202
PGGS+ S LA+YD + IK +V T+ G+AAS A+ ILA GEKG R A+P++RIM++QP
Sbjct: 104 SPGGSVISGLAMYDTIRHIKSEVVTINVGLAASMASFILAAGEKGKRLALPHSRIMIHQP 163
Query: 203 QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262
G+ G D+K + + + R + YA TG+P EKV Q +RD F+SA EA+E+GL
Sbjct: 164 MGGAQGQASDIKVEAQQILRIRKSLTEDYAQMTGRPYEKVLQDMDRDNFMSAYEAVEYGL 223
Query: 263 IDGILE 268
ID ++E
Sbjct: 224 IDRVIE 229
>gi|403515400|ref|YP_006656220.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
helveticus R0052]
gi|403080838|gb|AFR22416.1| ATP-dependent Clp protease proteolytic subunit ClpP [Lactobacillus
helveticus R0052]
Length = 193
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP+EK+Q+ TERD +L+A EA E+GLID I+
Sbjct: 138 AANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKEYGLIDEIM 189
>gi|323140768|ref|ZP_08075687.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414786|gb|EFY05586.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Phascolarctobacterium succinatutens YIT 12067]
Length = 197
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+ PI+ +A I+QL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIVFVTGPIDDNMANVVIAQLLFLESEDPDKDIHLYINSPGGSVSAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A+++LA G G R+A+P +R+M++QP G+ G +++
Sbjct: 79 DTMQYIKPDVSTICMGMAASMASVLLAAGAPGKRFALPYSRVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++++ A TGQ +EK+ TERD +L++ EA E+GLID ++
Sbjct: 139 HAREILRIREEMNQVLAKHTGQTVEKIAADTERDHYLTSKEAKEYGLIDEVV 190
>gi|325294216|ref|YP_004280730.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064664|gb|ADY72671.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 200
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA ++QL+ L D + DI +Y+N PGG + + LAIY
Sbjct: 24 DIYSRLLKDRIIMLGTPIDDHVANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++LA G KG R+A+P+ARIM++QP G G D++
Sbjct: 84 DTMQYIKPDVVTICLGQAASMGAVLLAAGAKGKRFALPHARIMIHQPLGGFQGQATDIEI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ + + TGQ + K+++ TERD F+SA EA ++GLID +L
Sbjct: 144 HAKEILRLKKMLNEILSKHTGQSLRKIEKDTERDYFMSAEEAQKYGLIDKVL 195
>gi|423390965|ref|ZP_17368191.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
BAG1X1-3]
gi|401636798|gb|EJS54551.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
BAG1X1-3]
Length = 193
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQP+EKV TERD F++A EA E+G++D ++E +
Sbjct: 139 TAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAVEAKEYGIVDAVIEKK 193
>gi|399888212|ref|ZP_10774089.1| ATP-dependent Clp protease proteolytic subunit [Clostridium arbusti
SL206]
Length = 194
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEDVNDTTASLIVAQLLFLESEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + K++ + + +GQP+E +++ TERD FL A EA E+GLID ++
Sbjct: 139 HAERILNIKKKLNSILSERSGQPLEVIERDTERDNFLEAIEAKEYGLIDEVI 190
>gi|94310823|ref|YP_584033.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
metallidurans CH34]
gi|430810194|ref|ZP_19437309.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus sp.
HMR-1]
gi|116243154|sp|Q1LM62.1|CLPP_RALME RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|93354675|gb|ABF08764.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Cupriavidus metallidurans CH34]
gi|429497428|gb|EKZ95961.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus sp.
HMR-1]
Length = 216
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D D+ +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSL 84
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + + TGQP+EK+ + T+RD F+S +A++
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQAVD 204
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 205 YGLIDKVI 212
>gi|423419205|ref|ZP_17396294.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
BAG3X2-1]
gi|401105811|gb|EJQ13778.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
BAG3X2-1]
Length = 193
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIKPHVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQP+EKV TERD F++A EA E+G++D ++E +
Sbjct: 139 TAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAVEAKEYGIVDAVIEKK 193
>gi|415886844|ref|ZP_11548587.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
methanolicus MGA3]
gi|387585495|gb|EIJ77820.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
methanolicus MGA3]
Length = 201
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA ++QL+ L + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTPIDDYVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPDVQTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ + TGQP+E + + T+RD F++A +A+E+GL+D I+
Sbjct: 139 AAKRILFLRDKLNQILSERTGQPVEVIAKDTDRDNFMTAQQALEYGLVDHII 190
>gi|356569022|ref|XP_003552706.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 3,
chloroplastic-like [Glycine max]
Length = 322
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 113/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RIIF+G ++ M A ISQL+ L D DI +++N PGGS+ + + I
Sbjct: 79 LDATNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINSPGGSVTAGMGI 138
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A ILA G KG RY MPN+R+M++QP +GG ++
Sbjct: 139 YDAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATEMS 198
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + KI+++ + TG+P E+++ T+RD F++ EA E+GL+DG+++
Sbjct: 199 IRIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVID 252
>gi|302878843|ref|YP_003847407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gallionella
capsiferriformans ES-2]
gi|302581632|gb|ADL55643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gallionella
capsiferriformans ES-2]
Length = 202
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 121/192 (63%), Gaps = 4/192 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N ++P V+ G D+ S L + R++F+ +N A ++Q++ L + + D D
Sbjct: 8 NIGMIPMVVETSGRGERAYDIYSRLLKERVVFLVGEVNDHSANLIVAQMLFLESENPDKD 67
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGGS+ + +AIYD M +IKP V T+C G AAS A +L GEKG R+A+PN+R
Sbjct: 68 IHFYINSPGGSVTAGMAIYDTMQFIKPAVSTLCIGQAASMGAFLLTAGEKGKRFALPNSR 127
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
+M++QP G G D++ E + + K+++M A TGQ +E +++ T+RD FLSAA+
Sbjct: 128 VMIHQPLGGFRGQASDIEIHAREILYLKQKLNQMLADHTGQTVEAIERDTDRDNFLSAAD 187
Query: 257 AMEFGLIDGILE 268
A+ +GL+D +LE
Sbjct: 188 AVAYGLVDQVLE 199
>gi|449463450|ref|XP_004149447.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent Clp protease
proteolytic subunit 3, chloroplastic-like [Cucumis
sativus]
Length = 339
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 113/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RIIF+G ++ M A ISQL+ L D DI +++N PGGS+ + + I
Sbjct: 95 LDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAXMGI 154
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A +LA G KG R+ MPN R+M++QP +GG ++
Sbjct: 155 YDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMS 214
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + K++++++ TG+PIE+++ TERD F++ EA E+GLID +++
Sbjct: 215 IRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVID 268
>gi|416156277|ref|ZP_11604409.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 101P30B1]
gi|416216367|ref|ZP_11623691.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 7169]
gi|416220781|ref|ZP_11625590.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 103P14B1]
gi|416228844|ref|ZP_11627776.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 46P47B1]
gi|416236087|ref|ZP_11630453.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 12P80B1]
gi|416237864|ref|ZP_11631219.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC1]
gi|416243368|ref|ZP_11633889.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC7]
gi|416245839|ref|ZP_11634734.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC8]
gi|416248951|ref|ZP_11636285.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis CO72]
gi|416253183|ref|ZP_11638206.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis O35E]
gi|421779131|ref|ZP_16215625.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis RH4]
gi|326561827|gb|EGE12162.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 7169]
gi|326563259|gb|EGE13526.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 46P47B1]
gi|326563373|gb|EGE13638.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 12P80B1]
gi|326565911|gb|EGE16072.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 103P14B1]
gi|326568952|gb|EGE19021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC1]
gi|326569251|gb|EGE19312.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC7]
gi|326571926|gb|EGE21931.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC8]
gi|326575439|gb|EGE25364.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 101P30B1]
gi|326576473|gb|EGE26381.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis CO72]
gi|326577944|gb|EGE27808.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis O35E]
gi|407813572|gb|EKF84352.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis RH4]
Length = 217
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 122/192 (63%), Gaps = 4/192 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L R R+IF+ + +A ++QL+ L + + D
Sbjct: 20 NNALVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPEKD 79
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGG + + +AIYD M++IKP V T+C G AAS + +L+ GEKG RYA+ N+R
Sbjct: 80 IHLYINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEKGKRYALANSR 139
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
+M++QP G G D++ E + + K++R+ A TGQPIEK+++ T+RD F+SA +
Sbjct: 140 VMIHQPLGGFRGQASDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDTDRDHFMSAEQ 199
Query: 257 AMEFGLIDGILE 268
A ++GL+D +L+
Sbjct: 200 ARDYGLVDVVLD 211
>gi|303232754|ref|ZP_07319439.1| Clp protease [Atopobium vaginae PB189-T1-4]
gi|302481240|gb|EFL44315.1| Clp protease [Atopobium vaginae PB189-T1-4]
Length = 204
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 123/191 (64%), Gaps = 4/191 (2%)
Query: 83 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ TP G D+ S L +RI+F+G+ + A I+QL+ L + D D DI
Sbjct: 8 PLIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVTRDSANLVIAQLLHLESQDPDKDIS 67
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y++ PGG +Y+ L I D M++IKP V T+C G+A S A+++LA G KG R +PN+ +M
Sbjct: 68 LYIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMACSMASVLLAAGAKGKRMCLPNSMVM 127
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP SG+ G D++ +E R ++ + A++TGQ E++ + TERD +L A +A+
Sbjct: 128 IHQPSSGAQGQQTDIQIVADETKWIREHLNELLASYTGQTKERINEDTERDNYLRAQDAL 187
Query: 259 EFGLIDGILET 269
E+GL+D ++ T
Sbjct: 188 EYGLVDKVITT 198
>gi|227877204|ref|ZP_03995278.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus JV-V01]
gi|227893204|ref|ZP_04011009.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
ultunensis DSM 16047]
gi|256842758|ref|ZP_05548246.1| Clp protease [Lactobacillus crispatus 125-2-CHN]
gi|256848932|ref|ZP_05554366.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus MV-1A-US]
gi|262045725|ref|ZP_06018689.1| Clp protease [Lactobacillus crispatus MV-3A-US]
gi|293380203|ref|ZP_06626285.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
crispatus 214-1]
gi|295692558|ref|YP_003601168.1| ATP-dependent clp protease proteolytic subunit [Lactobacillus
crispatus ST1]
gi|312977722|ref|ZP_07789469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
crispatus CTV-05]
gi|385814208|ref|YP_005850601.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
helveticus H10]
gi|423317935|ref|ZP_17295832.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus FB049-03]
gi|423321275|ref|ZP_17299147.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus FB077-07]
gi|227863258|gb|EEJ70703.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus JV-V01]
gi|227864973|gb|EEJ72394.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
ultunensis DSM 16047]
gi|256614178|gb|EEU19379.1| Clp protease [Lactobacillus crispatus 125-2-CHN]
gi|256714471|gb|EEU29458.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus MV-1A-US]
gi|260573684|gb|EEX30240.1| Clp protease [Lactobacillus crispatus MV-3A-US]
gi|290923247|gb|EFE00168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
crispatus 214-1]
gi|295030664|emb|CBL50143.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus ST1]
gi|310895461|gb|EFQ44528.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Lactobacillus
crispatus CTV-05]
gi|323466927|gb|ADX70614.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
helveticus H10]
gi|405596271|gb|EKB69616.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus FB077-07]
gi|405597314|gb|EKB70587.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
crispatus FB049-03]
Length = 194
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP+EK+Q+ TERD +L+A EA E+GLID I+
Sbjct: 138 AANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEEAKEYGLIDEIM 189
>gi|183220373|ref|YP_001838369.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910487|ref|YP_001962042.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167775163|gb|ABZ93464.1| Protease subunit of endopeptidase Clp [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167778795|gb|ABZ97093.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 200
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ S L R+RIIF+G I+ A +QL+ L + D DI +Y+N PGG + S LAI
Sbjct: 19 MDVYSRLLRDRIIFLGAGIDDTYANAVCAQLLFLEAENPDRDIYLYINSPGGYVSSGLAI 78
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M IKP+V T+C G A+S AA++LAGG KG R A+PN RIM++QP G+GG D++
Sbjct: 79 YDTMQLIKPEVRTLCIGQASSMAALLLAGGAKGKRSALPNGRIMMHQPYGGAGGQASDIE 138
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +++ + +Y G+P ++Q+ TER+ F+SA EA E+G+ID ++
Sbjct: 139 ISAKEIIKTKNTLIDLYCKHIGKPAAQIQKDTERNFFMSAEEAKEYGIIDNVI 191
>gi|18310375|ref|NP_562309.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
perfringens str. 13]
gi|110799833|ref|YP_696088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
perfringens ATCC 13124]
gi|110803073|ref|YP_698704.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
perfringens SM101]
gi|168207806|ref|ZP_02633811.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens E str. JGS1987]
gi|168212102|ref|ZP_02637727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens B str. ATCC 3626]
gi|168215325|ref|ZP_02640950.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens CPE str. F4969]
gi|168217824|ref|ZP_02643449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens NCTC 8239]
gi|169342288|ref|ZP_02863366.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens C str. JGS1495]
gi|182627116|ref|ZP_02954834.1| CAAX amino terminal protease family protein [Clostridium
perfringens D str. JGS1721]
gi|422346059|ref|ZP_16426973.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
perfringens WAL-14572]
gi|422874317|ref|ZP_16920802.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
perfringens F262]
gi|21759067|sp|Q8XKK1.1|CLPP_CLOPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|123146116|sp|Q0ST53.1|CLPP_CLOPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|123148745|sp|Q0TQK2.1|CLPP_CLOP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|18145055|dbj|BAB81099.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
perfringens str. 13]
gi|110674480|gb|ABG83467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens ATCC 13124]
gi|110683574|gb|ABG86944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens SM101]
gi|169299615|gb|EDS81674.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens C str. JGS1495]
gi|170660863|gb|EDT13546.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens E str. JGS1987]
gi|170709986|gb|EDT22168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens B str. ATCC 3626]
gi|170713287|gb|EDT25469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens CPE str. F4969]
gi|177907505|gb|EDT70163.1| CAAX amino terminal protease family protein [Clostridium
perfringens D str. JGS1721]
gi|182380151|gb|EDT77630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
perfringens NCTC 8239]
gi|373226681|gb|EHP49003.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
perfringens WAL-14572]
gi|380304794|gb|EIA17080.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
perfringens F262]
Length = 194
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + +N + A ++QL+ L + D D DI +Y+N PGGSI S +AIY
Sbjct: 20 DIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L+ G KG R+A+PNA IM++QP G G D+
Sbjct: 80 DTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + K++++ + T QP+EK++ ERD F+ A+EA+E+GLID ++E
Sbjct: 140 HAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKVIE 192
>gi|163751869|ref|ZP_02159083.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
KT99]
gi|161328219|gb|EDP99383.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
KT99]
Length = 203
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+ +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERIIFLVGPVEEHMANLVVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGG G R+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPDVSTVCIGQAASMGAFLLAGGAAGKRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E + + K+++M A TGQ +E +++ T+RD F+SAA+A E+GLID ++ +
Sbjct: 148 HAQEILGIKDKLNQMLAEHTGQSLEVIERDTDRDNFMSAAQAAEYGLIDSVMSKQ 202
>gi|443311871|ref|ZP_21041494.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechocystis
sp. PCC 7509]
gi|442778107|gb|ELR88377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechocystis
sp. PCC 7509]
Length = 219
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+G ++ VA ++QL+ L D + DI +
Sbjct: 16 IVPTVVEQSGMGERAFDIYSRLLRERIVFLGTQVDDAVADSIVAQLLFLDAEDPEKDIQL 75
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD + I+P V T+CFG+AAS A +L G KG R ++P+ARIM+
Sbjct: 76 YINSPGGSVTAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGAKGKRMSLPSARIMI 135
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A TG+P+E+++ TERD F+SA EA
Sbjct: 136 HQPLGGAQGQAVDIEIQAKEILYHKSRLNELLAHHTGKPLERIEADTERDFFMSAEEAKN 195
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 196 YGLIDSVI 203
>gi|338707314|ref|YP_004661515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
mobilis subsp. pomaceae ATCC 29192]
gi|336294118|gb|AEI37225.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
mobilis subsp. pomaceae ATCC 29192]
Length = 211
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 112/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+ + +A +QL+ L + DI +Y+N PGG + + LAI
Sbjct: 27 FDIYSRLLRERIIFVTGQVEDHMASVICAQLLFLEAENPKKDIYLYINSPGGVVTAGLAI 86
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+PKVGT+C G AAS + +LA GE GMR A N+RIM++QP G+ G D++
Sbjct: 87 HDTMQYIRPKVGTLCIGQAASMGSFLLAAGEPGMRIATTNSRIMIHQPSGGAQGMAADIE 146
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + RH+++ +Y+ +T QPIE++++ +RD+FL A EA FGLID + +
Sbjct: 147 IQAREILRMRHRLNSLYSKYTNQPIEEIEKAMDRDKFLEADEAQAFGLIDKVFD 200
>gi|317133441|ref|YP_004092755.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Ethanoligenens harbinense YUAN-3]
gi|315471420|gb|ADU28024.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Ethanoligenens harbinense YUAN-3]
Length = 194
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L +RII + +N + A ++QL+ L D D DI +Y+N PGGSI S +AI+
Sbjct: 20 DIFSRLLNDRIIMLSDQVNDVTASLVVAQLLFLEGQDPDKDIQLYINSPGGSITSGMAIF 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G+AAS + +LA G KG R+ +PN+ IM++QP G+ G D+K
Sbjct: 80 DTMQYVKCDVSTICIGMAASMGSFLLAAGTKGKRFVLPNSEIMIHQPSGGAQGQASDIKI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R +++ +Y+ FTG+P+E++++ TERD FL+A EA+ +GL+D ++
Sbjct: 140 AAEHIIRIRKRMNELYSGFTGKPVEEIERDTERDNFLTAEEAVAYGLVDKVI 191
>gi|410612507|ref|ZP_11323584.1| ATP-dependent Clp protease, protease subunit [Glaciecola
psychrophila 170]
gi|410167848|dbj|GAC37473.1| ATP-dependent Clp protease, protease subunit [Glaciecola
psychrophila 170]
Length = 214
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + +IF+ + +A ++QL+ L + + DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKENVIFLVGQVEDHMANLIVAQLLFLEAENPEKDIFLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V TVC G AAS A +L+ GEKG RY +PN+R+M++QP G G D +
Sbjct: 88 DTMNFIKPNVSTVCIGQAASMGAFLLSAGEKGKRYCLPNSRVMIHQPLGGFQGQASDFEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++R+ A TGQ EKV Q T+RD FLSA +A+E+GLID +L
Sbjct: 148 HAKEILSIKEKMNRLMAKHTGQEYEKVAQDTDRDNFLSATDAVEYGLIDQVL 199
>gi|338532521|ref|YP_004665855.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus fulvus
HW-1]
gi|337258617|gb|AEI64777.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus fulvus
HW-1]
Length = 203
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 114/175 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
DL S L ++RII +G P+N VA ++QL+ L + D D I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G AAS A++L G KG RYA+PN+RIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + R I+ + TG IE++++ TERD F+SA +A ++GLID ++E +
Sbjct: 138 QAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLIDEVVEKQ 192
>gi|254179427|ref|ZP_04886026.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1655]
gi|254200063|ref|ZP_04906429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei FMH]
gi|147749659|gb|EDK56733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei FMH]
gi|184209967|gb|EDU07010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1655]
Length = 211
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 20 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 79
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 80 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 139
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + A TGQ +E++ + T+RD F+S+ +A
Sbjct: 140 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKA 199
Query: 260 FGLIDGI 266
+GLID +
Sbjct: 200 YGLIDHV 206
>gi|39996891|ref|NP_952842.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
sulfurreducens PCA]
gi|409912312|ref|YP_006890777.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens KN400]
gi|60389697|sp|Q74C82.1|CLPP_GEOSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|39983779|gb|AAR35169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens PCA]
gi|298505904|gb|ADI84627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens KN400]
Length = 199
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+G P++ VA I+Q++ L D D DI +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHL 61
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + S +AIYD M +IK V T+C G AAS A++L+GGEKG R+++ ++RIM+
Sbjct: 62 YINSPGGVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMI 121
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ E + + +++ + A TGQ + KV+ TERD F+S AEA +
Sbjct: 122 HQPLGGFQGQATDIHIHAQEILKLKKRLNEILAENTGQQLAKVEADTERDYFMSGAEAKD 181
Query: 260 FGLIDGILE 268
+G+ID I+E
Sbjct: 182 YGIIDNIIE 190
>gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
CMCP6]
gi|37679288|ref|NP_933897.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
YJ016]
gi|320156969|ref|YP_004189348.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
MO6-24/O]
gi|27359628|gb|AAO08567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
vulnificus CMCP6]
gi|37198031|dbj|BAC93868.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus
YJ016]
gi|319932281|gb|ADV87145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
MO6-24/O]
Length = 208
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVL 203
>gi|335424989|ref|ZP_08553980.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salinisphaera
shabanensis E1L3A]
gi|334886665|gb|EGM25012.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salinisphaera
shabanensis E1L3A]
Length = 210
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 115/175 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + R+IF P++ +A ++QL+ L + + D DI +Y+N PGG I + ++I
Sbjct: 23 FDIYSRLLKERVIFCVGPVDDQMANLIVAQLLFLESDNPDKDIQLYINSPGGVITAGMSI 82
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V T+C G AAS A++LAGG G RYA+PN+R+M++QP G G D++
Sbjct: 83 YDTMQFIKPDVATMCLGQAASMGAVLLAGGAHGKRYALPNSRVMIHQPLGGFQGQATDIE 142
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + +R +++ + A TGQP++K++ TERD F+SA A ++G+ID +L +
Sbjct: 143 IHAREILHARERLNEVLAHHTGQPLDKIKHDTERDFFMSAQAATDYGVIDDVLTS 197
>gi|402822003|ref|ZP_10871512.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas sp.
LH128]
gi|402264484|gb|EJU14338.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas sp.
LH128]
Length = 222
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 114/175 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+FI + +A ++QL+ L + + DI MY+N PGG + + +AI
Sbjct: 38 FDIYSRLLRERIVFITGQVEDHMASLIVAQLLFLESENPTKDISMYINSPGGVVTAGMAI 97
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +IKP+V TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 98 HDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMVHQPSGGAQGMASDIE 157
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ +Y +TG+ ++++++ +RD FL A EA+ FGL+D + ET
Sbjct: 158 IQAREILRMRRRLNDLYVKYTGKSLDEIEKAMDRDTFLEADEALAFGLVDKVFET 212
>gi|255067667|ref|ZP_05319522.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
sicca ATCC 29256]
gi|340362161|ref|ZP_08684558.1| ATP-dependent Clp protease, protease subunit [Neisseria macacae
ATCC 33926]
gi|349609434|ref|ZP_08888828.1| ATP-dependent Clp protease proteolytic subunit [Neisseria sp.
GT4A_CT1]
gi|255048141|gb|EET43605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
sicca ATCC 29256]
gi|339887762|gb|EGQ77284.1| ATP-dependent Clp protease, protease subunit [Neisseria macacae
ATCC 33926]
gi|348611857|gb|EGY61487.1| ATP-dependent Clp protease proteolytic subunit [Neisseria sp.
GT4A_CT1]
Length = 206
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 121/195 (62%), Gaps = 6/195 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D D
Sbjct: 6 NNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKD 65
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+R
Sbjct: 66 IFFYINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSR 125
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
IM++QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA
Sbjct: 126 IMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSA 185
Query: 255 AEAMEFGLIDGILET 269
EA E+GLID +LE
Sbjct: 186 EEAKEYGLIDQVLEN 200
>gi|225378750|ref|ZP_03755971.1| hypothetical protein ROSEINA2194_04420 [Roseburia inulinivorans DSM
16841]
gi|225209409|gb|EEG91763.1| hypothetical protein ROSEINA2194_04420 [Roseburia inulinivorans DSM
16841]
Length = 202
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N A ++QL+ L + D DI +Y+N PGG + + LAIY
Sbjct: 28 DIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPGKDIHLYINSPGGMVTAGLAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +LAGG KG R A+PNA IM++QP G+ G +++
Sbjct: 88 DTMQYIKCDVSTICIGMAASMGAFLLAGGAKGKRLALPNAEIMIHQPSGGAKGQATEIQI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ ++ K++ + AA TG+P + + TERD ++SA EAME+GLID ++
Sbjct: 148 AAENILKTKKKLNEILAANTGKPYDVIAADTERDHYMSAQEAMEYGLIDNVI 199
>gi|332706287|ref|ZP_08426354.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
gi|332354935|gb|EGJ34408.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
Length = 198
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 120/174 (68%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ + L+R RIIF+G+ ++ + + I+ ++ L + D DI++Y+N PGGS+ + +AI
Sbjct: 21 IDIYNRLYRERIIFLGKEVDDEITNQIIAVMLYLDSEDNSKDIILYINSPGGSVTAGMAI 80
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M IK V TVC G+AAS + +LA G+KG R A+P++RIM++QP G+ G D++
Sbjct: 81 YDTMQHIKSDVVTVCVGLAASMGSFLLAAGKKGKRIALPHSRIMIHQPSGGTRGQATDIE 140
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ E + RH+++ +YA TGQ +EK+++ +RD F+SA EA E+GLID +++
Sbjct: 141 IEAREILRIRHQLNEIYAQNTGQSLEKIEKDMDRDFFMSADEAKEYGLIDQVID 194
>gi|325107894|ref|YP_004268962.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
brasiliensis DSM 5305]
gi|324968162|gb|ADY58940.1| ATP-dependent Clp protease proteolytic subunit ClpP [Planctomyces
brasiliensis DSM 5305]
Length = 215
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 117/174 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+ + +L NRIIF+ PI+ A + +L+ L + + D+ +Y+N PGGS+ + LAI
Sbjct: 32 MGIGDLLLDNRIIFLDGPIHDASANLIVMKLLYLQSENRHQDVHLYINSPGGSVTATLAI 91
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M ++ V T C G+AAS A+++AGG KG RY++P++++M++QP GG V D++
Sbjct: 92 YDTMQFLDCDVATYCVGLAASGGAVLMAGGAKGKRYSLPHSKMMIHQPFGQVGGQVSDIE 151
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + +R ++++ A TGQPIE++ + TERDR+L+A EA E+GL+D ++E
Sbjct: 152 IQAQEIINTRETLNQILADHTGQPIERIAKDTERDRYLTAKEAKEYGLVDEVVE 205
>gi|284097335|ref|ZP_06385465.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
gi|283831154|gb|EFC35134.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
Length = 203
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ + + I+QL+ L D + DI +Y+N PGGS+ + + IY
Sbjct: 18 DIYSRLLKDRIIFLGAPIDDIFSNLIIAQLLFLEAEDPEKDINLYINSPGGSVTAGMGIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP + T+C G AAS A++LA G +G R+A+PNAR+M++QP G G ++
Sbjct: 78 DTMQYVKPPITTICLGQAASMGALLLAAGTQGKRHALPNARVMIHQPMGGFQGQATEIDI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++++ + TGQ +EK+ Q TERD F+S EA ++GLID ++
Sbjct: 138 HAREILKIRERLNQILSEHTGQALEKISQDTERDYFMSGTEAKDYGLIDEVI 189
>gi|238026973|ref|YP_002911204.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia glumae
BGR1]
gi|237876167|gb|ACR28500.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia glumae
BGR1]
Length = 217
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +L+ G KG RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGLAASMGAFLLSSGAKGKRYALPNARVMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++++ A TGQ +E++ + T+RD F+S+ +A
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLRERLNKILAENTGQDVERIARDTDRDNFMSSDDAKA 205
Query: 260 FGLIDGI 266
+GLID +
Sbjct: 206 YGLIDHV 212
>gi|229018102|ref|ZP_04174977.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH1273]
gi|229024283|ref|ZP_04180742.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH1272]
gi|228737058|gb|EEL87594.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH1272]
gi|228743193|gb|EEL93318.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH1273]
Length = 198
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 24 DIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 84 DTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQP+EKV TERD F++A EA E+G++D ++E +
Sbjct: 144 TAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAVEAKEYGIVDAVIEKK 198
>gi|357511379|ref|XP_003625978.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|355500993|gb|AES82196.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
Length = 301
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 112/169 (66%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF+ RII G P++ +A +SQL+ L +D DI+MY+N PGGS+ + +AI+D M
Sbjct: 111 SQLFQYRIIRCGGPVDDDMANIIVSQLLYLDAVDPSKDIVMYVNSPGGSVTAGMAIFDTM 170
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G G D+ Q N
Sbjct: 171 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGFQGGQTDIDIQAN 230
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ + TGQ +EK+ Q T+RD F+SA EA E+GLIDG++
Sbjct: 231 EMLHHKANLNGYLSYQTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 279
>gi|289207758|ref|YP_003459824.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thioalkalivibrio sp. K90mix]
gi|288943389|gb|ADC71088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioalkalivibrio sp. K90mix]
Length = 224
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 118/174 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++R+IF P+ +A ++QL+ L + + D +I +Y+N PGG++ + +AIY
Sbjct: 34 DIYSRLLKDRVIFCVGPVEDYMANVIVAQLLFLESENPDKEISLYINSPGGAVTAGMAIY 93
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G AAS A++LAGG G RY++P++R+M++QP G G D+
Sbjct: 94 DTMQFIKPQVSTLCVGQAASMGAVLLAGGAPGKRYSLPHSRVMIHQPLGGFQGQASDIDI 153
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + R +++R+ A TGQ +E+V+Q T+RDRF++A EA ++GL+D +L +
Sbjct: 154 HAREILKIREELNRVLAHHTGQTVEQVEQDTDRDRFMTAVEAKDYGLVDNVLSS 207
>gi|254507754|ref|ZP_05119885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus 16]
gi|219549279|gb|EED26273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus 16]
Length = 208
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F++A +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMAAEQAVEYGLVDAVL 203
>gi|108757731|ref|YP_634562.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
DK 1622]
gi|3023519|sp|O30612.1|CLPP2_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|2384690|gb|AAB97819.1| proteosome major subunit [Myxococcus xanthus DK 1622]
gi|108461611|gb|ABF86796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
xanthus DK 1622]
Length = 203
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 114/175 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
DL S L ++RII +G P+N VA ++QL+ L + D D I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G AAS A++L G KG RYA+PN+RIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + R I+ + TG IE++++ TERD F+SA +A ++GLID ++E +
Sbjct: 138 QAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLIDEVVEKQ 192
>gi|89098789|ref|ZP_01171670.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. NRRL
B-14911]
gi|89086465|gb|EAR65585.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. NRRL
B-14911]
Length = 201
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ V+ ++QL+ L + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVSNSIVAQLLFLEAENPEKDITLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+PKV TVC G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQYIRPKVSTVCIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ + TGQP+E + + T+RD F++A A+E+GLID I+
Sbjct: 139 AAKRILFLREKLNQILSERTGQPLEVIAKDTDRDNFMTAERALEYGLIDQII 190
>gi|406836610|ref|ZP_11096204.1| endopeptidase Clp [Schlesneria paludicola DSM 18645]
Length = 201
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 118/189 (62%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G +D+ S L R+RII +G IN V+ ++QL+ L D ADI M
Sbjct: 4 LVPYVIEKNGRDERAMDIYSRLLRDRIILLGSAINDDVSNSIVAQLLYLQFEDSKADIHM 63
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI S +AIYD M +I V T C G AS A++L G KG RYA+PN+RIM+
Sbjct: 64 YINSPGGSITSGMAIYDTMQFIACDVATYCLGQCASMGAMLLTAGTKGKRYALPNSRIMI 123
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP +G G +++ E + ++ +++ + TGQ +EK+++ T+RD F+SA EA
Sbjct: 124 HQPLAGMQGTAVELEIHAKEVLRTKRRMNELMLKHTGQTLEKIEEDTDRDNFMSAEEAKG 183
Query: 260 FGLIDGILE 268
+GLID ILE
Sbjct: 184 YGLIDHILE 192
>gi|255528525|ref|ZP_05395307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
carboxidivorans P7]
gi|296184877|ref|ZP_06853288.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
carboxidivorans P7]
gi|255507783|gb|EET84241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
carboxidivorans P7]
gi|296050659|gb|EFG90082.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
carboxidivorans P7]
Length = 194
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++R++ + + +N + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRVVMLTEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G KG R A+PNA IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLNAGAKGKRVALPNAEIMIHQPLGGFQGQATDIGI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + K++ +++ TGQP+E +++ TERD F+SA EA E+GLID I+
Sbjct: 139 HAERILKIKKKLNTIFSERTGQPLETIEKDTERDNFMSAEEAKEYGLIDEIM 190
>gi|119512812|ref|ZP_01631880.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
gi|119462534|gb|EAW43503.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
Length = 232
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L + D + DI +
Sbjct: 30 MIPIVVEQSGRGERAFDIYSRLLRERIIFLGQQVDNEIANLIVAQLLFLDSEDSEKDIYL 89
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+ AS A +L+ G KG R ++P++RIM+
Sbjct: 90 YINSPGGSVMAGMGIFDTMKHIRPDVCTICTGLGASMGAFLLSAGAKGKRMSLPHSRIMI 149
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQPIE++ + TERD F+S EA E
Sbjct: 150 HQPLGGAQGQATDIEIQAREILYHKQRLNEYLAEHTGQPIERIAEDTERDFFMSPEEAKE 209
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 210 YGLIDQVID 218
>gi|427405940|ref|ZP_18896145.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
F0473]
gi|425708781|gb|EKU71820.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
F0473]
Length = 206
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA I+Q++ L + D D DI +Y+N PGG + + LA+Y
Sbjct: 20 DIYSRLLKERIIFLGGPIDDNVANVVIAQMLFLESEDPDKDIHLYINSPGGVVTAGLAMY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A+I+LA G G RYA+P ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMASILLAAGAPGKRYALPQARIMIHQPSGGAQGQSTDIQI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ E + TERD F+SA +A +GLID ++
Sbjct: 140 QAKEILRLRETANEILAKHTGQKPEAINVDTERDNFMSAEDAKAYGLIDEVV 191
>gi|42781876|ref|NP_979123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus ATCC 10987]
gi|67460501|sp|Q736T1.1|CLPP1_BACC1 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|42737800|gb|AAS41731.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus ATCC 10987]
Length = 193
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 113/175 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTXAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ I P+V T+C G+AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DXMNLIXPEVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQPIEK+ TERD F++A EA E+G++DG++E +
Sbjct: 139 TAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEAKEYGIVDGVVEKK 193
>gi|116256436|sp|Q3AJN8.2|CLPP2_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
Length = 197
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + ++++ + TGQ ++++QQ T+RD F+S EAM
Sbjct: 121 HQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMN 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDSVID 189
>gi|110596915|ref|ZP_01385205.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
ferrooxidans DSM 13031]
gi|110341602|gb|EAT60062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
ferrooxidans DSM 13031]
Length = 225
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 129/212 (60%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISG---KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ + SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHARTLYSGAIEQGITNTLVPMVIETSGRGERAFDIFSRLLRERIIFLGNGIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R +D + A TG
Sbjct: 125 GAFLLASGAKGKRASLPHSRIMIHQPSGGAHGQETDIIIQAREIEKIRKLLDELLARHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++++++ +ERDR+++A EA+E+G+ID + E
Sbjct: 185 KDVKQIREDSERDRWMNAEEALEYGIIDSVFE 216
>gi|398808177|ref|ZP_10567045.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Variovorax
sp. CF313]
gi|398088223|gb|EJL78790.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Variovorax
sp. CF313]
Length = 202
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + RIIF+ +N A ++QL+ L + + D DI
Sbjct: 11 MVPMVIEQSGRGERSYDIYSRLLKERIIFLVGEVNDQTANLVVAQLLFLESENPDKDISF 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G AAS A +LA GEKG R+++PN++IM+
Sbjct: 71 YINSPGGSVSAGMAIYDTMQFIKPDVSTMCLGFAASMGAFLLAAGEKGKRFSLPNSKIMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+Q G+ G D++ + + ++ +++R+ A TGQP+EKV+ TERD FL+A EA E
Sbjct: 131 HQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKTDTERDYFLTADEAKE 190
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 191 YGLVDQVV 198
>gi|163940539|ref|YP_001645423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
weihenstephanensis KBAB4]
gi|423365465|ref|ZP_17342898.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD142]
gi|163862736|gb|ABY43795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
weihenstephanensis KBAB4]
gi|401090832|gb|EJP98984.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD142]
Length = 193
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ A TGQP+EKV TERD F++A EA E+G++D ++E +
Sbjct: 139 TAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAEEAKEYGIVDAVIEKK 193
>gi|320102926|ref|YP_004178517.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
pallida ATCC 43644]
gi|319750208|gb|ADV61968.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
pallida ATCC 43644]
Length = 209
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 125/190 (65%), Gaps = 4/190 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P++P V+ GG +D+ S L ++RII + ++ + A ++QL+ LA D A+I
Sbjct: 2 PMVPIVIERGGREERAMDIYSRLLQDRIIMLSSILDDVTANLIVAQLLVLAHQDAKAEIS 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+YLN PGGS+ +A+YD M +I V T C G+AAS AAI+LAGG KG R+A+P+++IM
Sbjct: 62 LYLNSPGGSLTGTMAVYDTMQFIGCPVATYCIGMAASGAAILLAGGTKGRRHALPHSKIM 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
L+QP GG V D+ Q E + ++ ++++ A TG+ ++++ +RDR+LSA EA+
Sbjct: 122 LHQPYGHVGGQVSDISIQAAEVLRNKAVVEKVLARRTGRSEKQIESEIKRDRYLSAPEAL 181
Query: 259 EFGLIDGILE 268
EFGLID I+E
Sbjct: 182 EFGLIDHIVE 191
>gi|262037349|ref|ZP_06010814.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
goodfellowii F0264]
gi|261748606|gb|EEY35980.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
goodfellowii F0264]
Length = 189
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G + +A I+QL+ L D++ DI+MY+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGGEVEDNIANSIIAQLLFLDAQDKEKDIVMYINSPGGVVTAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IK V TVC G AAS A++LA G KG RY++PN+R+M++QP G+ G D++
Sbjct: 78 DTMRHIKADVSTVCIGQAASMGAVLLASGAKGKRYSLPNSRVMIHQPSGGARGQATDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + ++ + + TG+P+E++ + TERD F+S+ EA+ +G+ID IL
Sbjct: 138 QAKEIEKIKKTLNEILSEATGKPVEEIYRDTERDNFMSSEEALAYGIIDKIL 189
>gi|168004996|ref|XP_001755197.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693790|gb|EDQ80141.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 251
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 112/167 (67%)
Query: 101 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 160
LF+ RII G ++ +A ++QL+ L D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 61 LFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIVMYVNSPGGSVTAGMAIFDTMRH 120
Query: 161 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 220
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 121 IRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQTDIEIQANEI 180
Query: 221 VISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ A TGQP EK+ Q T+RD F+SA EA E+GLID ++
Sbjct: 181 LHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAQEYGLIDAVI 227
>gi|186686250|ref|YP_001869446.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
punctiforme PCC 73102]
gi|186468702|gb|ACC84503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
punctiforme PCC 73102]
Length = 203
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDNNIANLIVAQLLYLDAEDPEKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQPIE++ + TERD F+S EA E
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDYLADHTGQPIERIAEDTERDFFMSPEEARE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|83311891|ref|YP_422155.1| protease subunit of ATP-dependent Clp protease [Magnetospirillum
magneticum AMB-1]
gi|82946732|dbj|BAE51596.1| Protease subunit of ATP-dependent Clp protease [Magnetospirillum
magneticum AMB-1]
Length = 244
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + VA +QL+ L + + DI Y+N PGG + S LAIY
Sbjct: 61 DIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAFYINSPGGVVTSGLAIY 120
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+PKV TVC G AAS ++++ GEKG R+++PN+RIM++QP G+ G D++
Sbjct: 121 DTMQYIRPKVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIMVHQPSGGAQGQATDIEI 180
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ +Y TGQP++ +++ ERD+F++A EA EFGLID ++
Sbjct: 181 QAREILALRARLNNIYVEHTGQPLDVIEKVMERDKFMTADEAKEFGLIDEVV 232
>gi|415938744|ref|ZP_11555478.1| ATP-dependent Clp protease, proteolytic subunit [Herbaspirillum
frisingense GSF30]
gi|407759378|gb|EKF69073.1| ATP-dependent Clp protease, proteolytic subunit [Herbaspirillum
frisingense GSF30]
Length = 204
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +
Sbjct: 13 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISL 72
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AI+D M +IKP+V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 73 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 132
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + A TG+ +E++ + T+RD F+SA A+E
Sbjct: 133 HQPLGGAQGQASDIEIQAREILYLRERLNSILADKTGRSVEQISKDTDRDNFMSADAAVE 192
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 193 YGLIDKVL 200
>gi|403381812|ref|ZP_10923869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JC66]
Length = 193
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I+ +A ++QL+ L D D DI MY+N PGGS + I+
Sbjct: 19 DIYSRLLKDRIVFVGAAIDDALANSIVAQLLFLQAEDPDKDIHMYINSPGGSTSAGFGIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G AAS A+++L G KG R+A+PN+ IM++QP G+ G D+
Sbjct: 79 DTMQYIKPQVNTICTGFAASFASLLLLAGAKGKRFALPNSEIMIHQPHGGAQGQASDIAI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R KI ++ + TGQPIEK+++ +RD F+SA EA+E+G+ID I+
Sbjct: 139 SARRILQVREKIVKITSERTGQPIEKIEKDMDRDYFMSAEEALEYGIIDKII 190
>gi|226356972|ref|YP_002786712.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus deserti
VCD115]
gi|226318962|gb|ACO46958.1| putative Endopeptidase Clp [Deinococcus deserti VCD115]
Length = 200
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI S +A ++QL+ L + + + +I MY+NCPGG +Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+A S +++L G+KG R A+PN+RIM++Q +G G+ D++
Sbjct: 79 DTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEV 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R K+ +Y T P EK+ + ERD F+S EAM +GLID ++E
Sbjct: 139 QAKEVLHLRDKLVEIYHRHTDIPHEKLMRDMERDYFMSPEEAMRYGLIDSVIE 191
>gi|78212970|ref|YP_381749.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CC9605]
gi|78197429|gb|ABB35194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. CC9605]
Length = 218
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 22 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 81
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 82 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 141
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + ++++ + TGQ ++++QQ T+RD F+S EAM
Sbjct: 142 HQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMN 201
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 202 YGLIDSVID 210
>gi|284047883|ref|YP_003398222.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidaminococcus fermentans DSM 20731]
gi|283952104|gb|ADB46907.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidaminococcus fermentans DSM 20731]
Length = 197
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+ I +A I+QL+ L + D D D+ +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFVTGEIEDHMANLIIAQLLFLESEDPDKDVHLYINSPGGSVSAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G+AAS A+++LA G KG RYA+P++R+M++QP G+ G D++
Sbjct: 79 DTMQYIRPDVSTICVGMAASMASVLLAAGTKGKRYALPHSRVMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + R +++++ A+ TGQ E+++ TERD F++A EA +GLID ++
Sbjct: 139 HAREILRIREEMNQILASHTGQTPEQIRLDTERDHFMTAEEAANYGLIDQVVH 191
>gi|237747781|ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
formigenes OXCC13]
gi|229379143|gb|EEO29234.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
formigenes OXCC13]
Length = 207
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI +
Sbjct: 16 MIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLFLESENPDKDISL 75
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP+V T+C G+AAS A +LA GEKG R+++PN+RIM+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMI 135
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ E + R +++ + A TG+ IE+V + TERD F+SA EA +
Sbjct: 136 HQPSGGAQGQATDIEIHAREILYLRERLNGILADNTGKSIEQVARDTERDNFMSANEAKD 195
Query: 260 FGLIDGIL 267
+GLID +L
Sbjct: 196 YGLIDDVL 203
>gi|53719039|ref|YP_108025.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei K96243]
gi|121601387|ref|YP_993274.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
SAVP1]
gi|124386617|ref|YP_001029282.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
NCTC 10229]
gi|126440189|ref|YP_001059356.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 668]
gi|126450257|ref|YP_001080784.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
NCTC 10247]
gi|126451473|ref|YP_001066627.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1106a]
gi|134277993|ref|ZP_01764708.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 305]
gi|217421679|ref|ZP_03453183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 576]
gi|226197408|ref|ZP_03792985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pakistan 9]
gi|237812684|ref|YP_002897135.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei MSHR346]
gi|238562204|ref|ZP_00440781.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei GB8 horse 4]
gi|242317499|ref|ZP_04816515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106b]
gi|251766649|ref|ZP_02264557.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei PRL-20]
gi|254178458|ref|ZP_04885113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 10399]
gi|254189184|ref|ZP_04895695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pasteur 52237]
gi|254206398|ref|ZP_04912750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei JHU]
gi|254258354|ref|ZP_04949408.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710a]
gi|254297312|ref|ZP_04964765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 406e]
gi|254358192|ref|ZP_04974465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei 2002721280]
gi|386861423|ref|YP_006274372.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026b]
gi|403519055|ref|YP_006653189.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BPC006]
gi|418382821|ref|ZP_12966747.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354a]
gi|418533694|ref|ZP_13099553.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026a]
gi|418540564|ref|ZP_13106094.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258a]
gi|418546808|ref|ZP_13111999.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258b]
gi|418553028|ref|ZP_13117869.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354e]
gi|67460243|sp|Q63V41.1|CLPP_BURPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201803|sp|A3MKJ8.1|CLPP_BURM7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201804|sp|A2SBG3.1|CLPP_BURM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201805|sp|A1V4X1.1|CLPP_BURMS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201806|sp|A3NWA6.1|CLPP_BURP0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201807|sp|A3NAI5.1|CLPP_BURP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|52209453|emb|CAH35404.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei K96243]
gi|121230197|gb|ABM52715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei SAVP1]
gi|124294637|gb|ABN03906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei NCTC 10229]
gi|126219682|gb|ABN83188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 668]
gi|126225115|gb|ABN88655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106a]
gi|126243127|gb|ABO06220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei NCTC 10247]
gi|134251643|gb|EBA51722.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 305]
gi|147753841|gb|EDK60906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei JHU]
gi|148027319|gb|EDK85340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei 2002721280]
gi|157807201|gb|EDO84371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 406e]
gi|157936863|gb|EDO92533.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pasteur 52237]
gi|160699497|gb|EDP89467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 10399]
gi|217395421|gb|EEC35439.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 576]
gi|225930787|gb|EEH26797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pakistan 9]
gi|237504658|gb|ACQ96976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei MSHR346]
gi|238523066|gb|EEP86507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei GB8 horse 4]
gi|242140738|gb|EES27140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106b]
gi|243065058|gb|EES47244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei PRL-20]
gi|254217043|gb|EET06427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710a]
gi|385360654|gb|EIF66568.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026a]
gi|385361174|gb|EIF67066.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258a]
gi|385362934|gb|EIF68724.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258b]
gi|385372144|gb|EIF77269.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354e]
gi|385376976|gb|EIF81604.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354a]
gi|385658551|gb|AFI65974.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026b]
gi|403074698|gb|AFR16278.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BPC006]
Length = 217
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + A TGQ +E++ + T+RD F+S+ +A
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKA 205
Query: 260 FGLIDGI 266
+GLID +
Sbjct: 206 YGLIDHV 212
>gi|90410782|ref|ZP_01218797.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
profundum 3TCK]
gi|90328413|gb|EAS44711.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
profundum 3TCK]
Length = 207
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG KG RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + +++ + A TGQP+E V+ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQRLNNLLAEHTGQPLEIVEGDTDRDNFMSADQAVEYGLVDSVL 203
>gi|375264871|ref|YP_005022314.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. EJY3]
gi|369840195|gb|AEX21339.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. EJY3]
Length = 208
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F+SA +A+E+G++D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMSAEQAVEYGIVDAVL 203
>gi|115311359|sp|Q2W3H9.2|CLPP_MAGMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 203
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + VA +QL+ L + + DI Y+N PGG + S LAIY
Sbjct: 20 DIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAFYINSPGGVVTSGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+PKV TVC G AAS ++++ GEKG R+++PN+RIM++QP G+ G D++
Sbjct: 80 DTMQYIRPKVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIMVHQPSGGAQGQATDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ +Y TGQP++ +++ ERD+F++A EA EFGLID ++
Sbjct: 140 QAREILALRARLNNIYVEHTGQPLDVIEKVMERDKFMTADEAKEFGLIDEVV 191
>gi|398345034|ref|ZP_10529737.1| ATP-dependent Clp protease proteolytic subunit [Leptospira inadai
serovar Lyme str. 10]
Length = 198
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 121/191 (63%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L ++RIIF+G I+ A I+QL+ L + D DI +
Sbjct: 3 VIPVVIEQTGRGERSYDIYSRLLKDRIIFLGNAISDEYANVVIAQLLFLDAENPDRDIYL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + S LAIYD M +IK V T+C G A+S AA++LAGG KG R A+P++RIM+
Sbjct: 63 YINSPGGYVSSGLAIYDTMQYIKADVRTLCVGQASSMAALLLAGGAKGKRSALPHSRIMM 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D+ Q E + + ++ +Y TG+PIE++Q+ TERD +++A EA
Sbjct: 123 HQPTGGATGQASDIAIQAKEVLKLKEILNGLYTKHTGKPIEQIQKDTERDLYMTAEEAQI 182
Query: 260 FGLIDGILETE 270
+G+ID ++ E
Sbjct: 183 YGIIDSVISIE 193
>gi|226939792|ref|YP_002794865.1| Protease subunit of ATP-dependent Clp protease [Laribacter
hongkongensis HLHK9]
gi|254763792|sp|C1D539.1|CLPP_LARHH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226714718|gb|ACO73856.1| Protease subunit of ATP-dependent Clp protease [Laribacter
hongkongensis HLHK9]
Length = 212
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 122/190 (64%), Gaps = 4/190 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++Q++ L + + D DI +
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERIVFMVGPVTDETANLVVAQMLFLESENPDKDIHL 78
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + L+IYD M++IKP V T+C G AAS A +L+ G KG R+A+PN+R+M+
Sbjct: 79 YINSPGGSVTAGLSIYDTMNFIKPSVSTLCIGQAASMGAFLLSAGAKGKRFALPNSRVMI 138
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D + E + + K++ + AA G+P+E +++ T+RD F++AA+A+E
Sbjct: 139 HQPLGGFQGQASDFEIHAREILTLKRKLNELMAAHCGRPLEDLERDTDRDNFMNAAQALE 198
Query: 260 FGLIDGILET 269
+GLID +LE
Sbjct: 199 YGLIDQVLEN 208
>gi|428317797|ref|YP_007115679.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
gi|428241477|gb|AFZ07263.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
Length = 197
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 126/190 (66%), Gaps = 5/190 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P +P M PGG +++ L+R RIIF+G+ I+ +A + I+ ++ L + D DI+
Sbjct: 6 PKVPYKM-PGGYDTQWINIYDRLYRERIIFLGRDIDDEIANQIIAVMLYLDSEDSGKDII 64
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGG + + +AI+D M IK V T+C G+AAS + +LA G KG R A+P++RIM
Sbjct: 65 LYINSPGGMVSAGMAIFDTMQHIKSDVVTICVGLAASMGSFLLAAGAKGKRLALPHSRIM 124
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D++ + E + RH+++ +YA TG+PIEK+++ +RD F+SA EA
Sbjct: 125 IHQPSGGTRGQATDIQIEAKEILRLRHELNNIYAKNTGKPIEKIEKDMDRDYFMSAEEAR 184
Query: 259 EFGLIDGILE 268
E+GLID ++E
Sbjct: 185 EYGLIDRVIE 194
>gi|410459040|ref|ZP_11312794.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
azotoformans LMG 9581]
gi|409930746|gb|EKN67741.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
azotoformans LMG 9581]
Length = 198
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTAIDDTVANSIVAQLLFLAAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +L G G R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLTAGAPGKRFALPNSEIMIHQPLGGTQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++ + A +GQPIE + + TERD F+ A +A E+GLID ++
Sbjct: 139 HARRIIRMREKLNAIMAERSGQPIEIINRDTERDNFMDAEQAREYGLIDKVI 190
>gi|384083495|ref|ZP_09994670.1| ATP-dependent Clp protease, proteolytic subunitclpp [gamma
proteobacterium HIMB30]
Length = 201
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 112/173 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + +AIY
Sbjct: 20 DIYSRLLKERVIFMVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A +LAGG KG R+A+PN+R+M++QP G G D+
Sbjct: 80 DTMQFIKPDVSTLCIGQAASMGAFLLAGGAKGKRFALPNSRMMIHQPLGGYSGQASDIDI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + R K++ A TGQ I+++ + T+RDRF+ AAEA +GLID +LE
Sbjct: 140 HAKEILKIREKLNSKLAHHTGQTIKQIAKDTDRDRFMDAAEAKSYGLIDDVLE 192
>gi|76262827|gb|ABA41488.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
Length = 306
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 114/169 (67%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G ++ +A ++QL+ L +D + DI+MY+N PGGS+ + +A++D M
Sbjct: 116 SQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAVFDTM 175
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D+ Q N
Sbjct: 176 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQAN 235
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQ +E++ Q T+RD F+SA EA E+GLIDG++
Sbjct: 236 EMLHHKANLNSYLAYHTGQSLERINQDTDRDFFMSAKEAKEYGLIDGVI 284
>gi|53723667|ref|YP_103112.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
ATCC 23344]
gi|76808778|ref|YP_333874.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1710b]
gi|167719122|ref|ZP_02402358.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei DM98]
gi|167738116|ref|ZP_02410890.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 14]
gi|167815308|ref|ZP_02446988.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 91]
gi|167823710|ref|ZP_02455181.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 9]
gi|167845261|ref|ZP_02470769.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei B7210]
gi|167893805|ref|ZP_02481207.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 7894]
gi|167902257|ref|ZP_02489462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei NCTC 13177]
gi|167910496|ref|ZP_02497587.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 112]
gi|167918525|ref|ZP_02505616.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BCC215]
gi|67460238|sp|Q62JK7.1|CLPP_BURMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|92087004|sp|Q3JRC9.1|CLPP_BURP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|52427090|gb|AAU47683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 23344]
gi|76578231|gb|ABA47706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710b]
Length = 207
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + A TGQ +E++ + T+RD F+S+ +A
Sbjct: 136 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKA 195
Query: 260 FGLIDGI 266
+GLID +
Sbjct: 196 YGLIDHV 202
>gi|31340017|sp|Q8DG26.2|CLPP_VIBVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|60389705|sp|Q7MMG7.2|CLPP_VIBVY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 200
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 24 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F+SA +A+E+GL+D +L
Sbjct: 144 HAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVL 195
>gi|330446593|ref|ZP_08310245.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490784|dbj|GAA04742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 207
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG KG RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + +++ + A TGQP+E +++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQRLNGLLAEHTGQPLEIIERDTDRDNFMSADQAVEYGLVDAVL 203
>gi|330817271|ref|YP_004360976.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
gladioli BSR3]
gi|327369664|gb|AEA61020.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
gladioli BSR3]
Length = 217
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +L+ G KG RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGLAASMGAFLLSSGAKGKRYALPNARVMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++++ A TGQ +E++ + T+RD F+S+ +A
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLRERLNKILADNTGQDVERIARDTDRDNFMSSDDAKA 205
Query: 260 FGLIDGI 266
+GLID +
Sbjct: 206 YGLIDHV 212
>gi|83858431|ref|ZP_00951953.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis sp.
HTCC2633]
gi|83853254|gb|EAP91106.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis sp.
HTCC2633]
Length = 207
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RI+F+ PI +A ++QL+ L + + + +I MY+N PGGS+ + LAIY
Sbjct: 27 DIYSRLLKERIVFVTGPIEDHMASLMVAQLLFLESENPNKEIAMYINSPGGSVSAGLAIY 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I V T C G+AAS +++L G+KGMR+A PNARIML+QP G G D++R
Sbjct: 87 DTMQYISCPVATACVGMAASMGSLLLTAGDKGMRFATPNARIMLHQPSGGFRGTTADIER 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + + +++ +Y TGQP+EKV++ +RD ++ A EA EFGLID + E
Sbjct: 147 HGEDILKIKRRMNEIYVKHTGQPLEKVEKTLDRDFYMDAMEAKEFGLIDHVYE 199
>gi|292670226|ref|ZP_06603652.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
ATCC 43541]
gi|292648178|gb|EFF66150.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
ATCC 43541]
Length = 197
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ +K+ TERD F+SA EA +GLID ++
Sbjct: 134 QAKEILRLREVGNHILARHTGQDEKKINVDTERDNFMSAEEAKAYGLIDEVV 185
>gi|261253459|ref|ZP_05946032.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417955962|ref|ZP_12598960.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260936850|gb|EEX92839.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342811482|gb|EGU46519.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 208
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F++A +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMAADQAVEYGLVDAVL 203
>gi|169831635|ref|YP_001717617.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638479|gb|ACA59985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Desulforudis audaxviator MP104C]
Length = 198
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+FIG PI VA I+QL+ L D D DI +Y+N PGG + S +AIY
Sbjct: 20 DIYSRLLKDRIVFIGGPIEDHVANLIIAQLLFLEAEDPDKDIHLYINSPGGLVTSGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G AAS A +LA G G R+A+P ARIM++QP G G ++
Sbjct: 80 DTMQYIRPDVSTICLGQAASFGAFLLAAGTPGKRFALPYARIMMHQPLGGVQGQATEIDI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + ++ ++ + A TGQP+EK+++ TERD F+S +A E+G+ID ++
Sbjct: 140 HAREILRTKRVLNELLAKHTGQPVEKIERDTERDFFMSPEQAREYGIIDEVI 191
>gi|365873788|ref|ZP_09413321.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio velox DSM 12556]
gi|363983875|gb|EHM10082.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio velox DSM 12556]
Length = 194
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIFIGQ I+ +A ++QL+ L + D D D+ +
Sbjct: 4 LIPYVIEQTGRGERSYDIYSRLLKDRIIFIGQEIDDHLANLVVAQLLFLESEDPDKDVYL 63
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + LAIYD M +IK V T+C G AAS AA++LA GE+G R ++P++RIM+
Sbjct: 64 YINSPGGVVTAGLAIYDTMQYIKCPVSTICTGQAASMAAVLLAAGERGKRISLPHSRIMI 123
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + ++ + + TGQP+E++ + T+RD F+SA EA
Sbjct: 124 HQPLGGAQGQASDIEIQAREILRVKEILNSILSNHTGQPLERIARDTDRDFFMSADEACA 183
Query: 260 FGLIDGILE 268
+G++D ++E
Sbjct: 184 YGIVDKVIE 192
>gi|254673129|emb|CBA07904.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
meningitidis alpha275]
Length = 209
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 12 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 72 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191
Query: 258 MEFGLIDGILET 269
E+GLID ILE
Sbjct: 192 KEYGLIDQILEN 203
>gi|409406436|ref|ZP_11254898.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum sp.
GW103]
gi|386434985|gb|EIJ47810.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum sp.
GW103]
Length = 208
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +Y+N PGGS+ + +AI+
Sbjct: 33 DIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISLYINSPGGSVSAGMAIF 92
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA G KG R+++PN+RIM++QP G+ G D++
Sbjct: 93 DTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEI 152
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ + A TG+ +E++ + T+RD F+SA A E+GLID +L
Sbjct: 153 QAREILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSAEAAAEYGLIDQVL 204
>gi|116786219|gb|ABK24027.1| unknown [Picea sitchensis]
Length = 317
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 114/175 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ +L R RI+F+G ++ VA ISQL+ L + + DI +++NCPGGSI + + I+
Sbjct: 104 DVMGLLLRQRIVFLGSNMDDFVADAIISQLLLLDAQNPNKDIRLFINCPGGSINAAMGIF 163
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + + V T+ FG+AAS A+I+LAGG KG R AMPN RIM++QP G+ G DV+
Sbjct: 164 DTIQLCRADVSTIAFGLAASTASIVLAGGSKGKRLAMPNTRIMMHQPLGGASGSAIDVEI 223
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + + + R+ + TG+ E+V +RDR++S EA+E+GLIDG+++ E
Sbjct: 224 QAKEIMYHKSNVTRIISERTGRSTEQVDNDMDRDRYMSPMEAVEYGLIDGVIDKE 278
>gi|398817357|ref|ZP_10575983.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
gi|398030411|gb|EJL23825.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
Length = 193
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++QL+ LA D DI +Y+N PGGS+ + +AI
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDQVANAVVAQLLFLAAEDPKKDIHLYINSPGGSVTAGMAII 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D MS+I P V T+C G+AAS A++L G G RYA+PNA +ML+QP GS G D+K
Sbjct: 79 DTMSFIAPDVSTICTGMAASMGAMLLVAGAPGKRYALPNAEVMLHQPWGGSQGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + R+ + + A TG+ +E++++ +RD FL+AAEA+E+GLID ++E
Sbjct: 139 AADRIMRHRNMLYTIIAERTGKTVEQIEKDADRDYFLTAAEALEYGLIDKVIE 191
>gi|307109118|gb|EFN57356.1| hypothetical protein CHLNCDRAFT_142728 [Chlorella variabilis]
Length = 267
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 118/194 (60%), Gaps = 4/194 (2%)
Query: 74 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
II+G+ P L P G D +L R RI+F G +N A ISQL+ L D
Sbjct: 57 IIAGQQ--PILSPRTQDMAG--DPFGLLLRQRIVFFGGEVNDFSADAIISQLLLLDAQDP 112
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
DI M++N PGGS+ + + IYD M + V T CFG+AAS A +L G +G RY+MP
Sbjct: 113 TKDIKMFINSPGGSVTAGMGIYDAMMMCRADVQTYCFGLAASMGAFLLGAGTRGKRYSMP 172
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
NARIM++QP G+ G D++ Q E + + ++R+ + +TGQPIEK+++ T+RDR++S
Sbjct: 173 NARIMIHQPLGGASGAAVDIEIQAKEIMYHKANLNRIMSQYTGQPIEKIEEDTDRDRYMS 232
Query: 254 AAEAMEFGLIDGIL 267
EA +GLID ++
Sbjct: 233 PLEAKNYGLIDSLV 246
>gi|304387382|ref|ZP_07369574.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
meningitidis ATCC 13091]
gi|304338633|gb|EFM04751.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
meningitidis ATCC 13091]
Length = 209
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 12 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 72 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191
Query: 258 MEFGLIDGILET 269
E+GLID ILE
Sbjct: 192 KEYGLIDQILEN 203
>gi|261364459|ref|ZP_05977342.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
mucosa ATCC 25996]
gi|419795668|ref|ZP_14321253.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sicca VK64]
gi|288567379|gb|EFC88939.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
mucosa ATCC 25996]
gi|385700246|gb|EIG30498.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sicca VK64]
Length = 206
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 121/195 (62%), Gaps = 6/195 (3%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D D
Sbjct: 6 NNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLIGPVTDESANLVVAQLLFLESENPDKD 65
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+R
Sbjct: 66 IFFYINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSR 125
Query: 197 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254
IM++QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA
Sbjct: 126 IMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSA 185
Query: 255 AEAMEFGLIDGILET 269
EA E+GLID +LE
Sbjct: 186 EEAKEYGLIDQVLEN 200
>gi|434405726|ref|YP_007148611.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Cylindrospermum stagnale PCC 7417]
gi|428259981|gb|AFZ25931.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Cylindrospermum stagnale PCC 7417]
Length = 201
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDNSIANLIVAQLLFLDAEDSEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQPIE++ + TERD F+S EA E
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPEEARE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|354559730|ref|ZP_08978975.1| ATP-dependent Clp protease proteolytic subunit [Desulfitobacterium
metallireducens DSM 15288]
gi|353540550|gb|EHC10024.1| ATP-dependent Clp protease proteolytic subunit [Desulfitobacterium
metallireducens DSM 15288]
Length = 204
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 20 DIYSRLLKDRIIFLGGPIDDDVANLIVAQLLFLEAEDPEKDIFLYINSPGGSISAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG---GHVED 212
D M +I+P V T+C G+AAS A +L G KG R A+PNA I+++QP G G G +
Sbjct: 80 DTMQYIRPDVHTICVGLAASMGAFLLTSGAKGKRTALPNAEILIHQPLIGGGGISGQATE 139
Query: 213 VKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
V+ + R +++R+ A TGQ +EK++ TERD +++A EA E+GL+D +LE
Sbjct: 140 VEIHAKHLLQVRARMNRILAERTGQTVEKIEADTERDHYMTADEAKEYGLVDEVLE 195
>gi|154148860|ref|YP_001405639.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
hominis ATCC BAA-381]
gi|166201810|sp|A7HZE8.1|CLPP_CAMHC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|153804869|gb|ABS51876.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
hominis ATCC BAA-381]
Length = 195
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+ + IN VA ++QL+ L D D DI +Y+N PGG + S +IY
Sbjct: 18 DIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPGGVVTSGFSIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G AAS A +L+ GEKG RYA+PNARIM++QP G+ G D++
Sbjct: 78 DTMNYIKPAVSTICIGQAASMGAFLLSCGEKGKRYALPNARIMIHQPLGGAQGQATDIEI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + + ++++ A +GQ + K+++ T+RD ++SA EA+++GLID +LE
Sbjct: 138 TTKEILRIKATLNKILAENSGQKLSKIEKDTDRDFYMSAQEAVKYGLIDKVLE 190
>gi|154249786|ref|YP_001410611.1| ATP-dependent Clp protease proteolytic subunit [Fervidobacterium
nodosum Rt17-B1]
gi|154153722|gb|ABS60954.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Fervidobacterium nodosum Rt17-B1]
Length = 206
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 117/173 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++QL+ L + D DI +Y+N PGG + + LAIY
Sbjct: 30 DIYSRLLKDRIIFLGSAIDDHVANLVVAQLLFLEAENPDKDIQLYINSPGGLVTAGLAIY 89
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G AAS A++LA G KG R+A+PN+RIM++QP G+ G +DV+
Sbjct: 90 DTMQYVKCDVATICVGQAASMGAVLLAAGAKGKRFALPNSRIMIHQPLGGAEGSAKDVEI 149
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + + I+ + + TGQ IE++++ T+RD F+SA EAME+G+ID +++
Sbjct: 150 LTKELLRIKRIINEILSKHTGQDIERIEKDTDRDFFMSAQEAMEYGIIDKVIK 202
>gi|391342988|ref|XP_003745797.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Metaseiulus occidentalis]
Length = 231
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 117/190 (61%), Gaps = 4/190 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P++P V+ G D+ S L + RII + PIN +A ++QL+ L + I
Sbjct: 26 PMVPIVIEQTGRGERAYDIYSRLLKERIICLMGPINDDIASLVVAQLLFLQSESSKKPIH 85
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGS+ + L IYD M ++ P + T C G A S A+++LA GE+GMR+++PN+RIM
Sbjct: 86 LYINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQACSAASLLLAAGEQGMRHSLPNSRIM 145
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G G D++ E + + K++R+YA T QPIE + ERDRF+S +A
Sbjct: 146 VHQPSGGVSGQATDIQIHAEEILYLKKKVNRIYAKHTKQPIEAIDSIMERDRFMSPEQAK 205
Query: 259 EFGLIDGILE 268
+FGLID +LE
Sbjct: 206 DFGLIDTVLE 215
>gi|332186782|ref|ZP_08388524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingomonas
sp. S17]
gi|332013115|gb|EGI55178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sphingomonas
sp. S17]
Length = 229
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 115/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+ + +A +QL+ L + + DI MY+N PGG + + +AI
Sbjct: 43 FDIFSRLLRERIIFVTGGVEDGMASLICAQLLFLESENPKKDIYMYINSPGGVVTAGMAI 102
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P+VGT+C G AAS + +LA GE GMR A N+RIM++QP G+ G D++
Sbjct: 103 HDTMQYIRPRVGTLCIGQAASMGSFLLAAGEPGMRVATTNSRIMIHQPSGGAQGMAADIE 162
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + RH ++ +YA +TG+P+E++++ +RD+F+S+ EA EFGLID + +
Sbjct: 163 IQAREILRMRHFLNSLYAKYTGKPLEEIERAMDRDKFMSSEEAKEFGLIDQVFD 216
>gi|374605361|ref|ZP_09678292.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
dendritiformis C454]
gi|374389036|gb|EHQ60427.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
dendritiformis C454]
Length = 198
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+Q++ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDDVANSIIAQMLFLQADDPEKDIHLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS +++L G G R A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQHIKPDVSTICVGLAASMGSLLLTAGAPGKRIALPNSEIMIHQPLGGVRGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + +R K++++Y TGQP EK+++ T+RD F+SA EA +GL+D +L
Sbjct: 139 HADWIIKTRQKLNQIYVDRTGQPYEKIERDTDRDYFMSADEAKAYGLVDSVLH 191
>gi|260776382|ref|ZP_05885277.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607605|gb|EEX33870.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
coralliilyticus ATCC BAA-450]
Length = 208
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F++A +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMAADQAVEYGLVDAVL 203
>gi|85707624|ref|ZP_01038690.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
gi|85689158|gb|EAQ29161.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
Length = 235
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 114/175 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+ + +A ++QL+ L + + I MY+N PGG + + +AI
Sbjct: 42 FDIFSRLLRERIVFVTGQVEDTMASLIVAQLLFLESENPSKPISMYINSPGGVVTAGMAI 101
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +IKP+V TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 102 HDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRVALPNARIMVHQPSGGARGMASDIE 161
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ +Y +TGQ ++++++ +RD FL A EAM+FGL+D + ET
Sbjct: 162 IQAREILRIRSRMNDLYVKYTGQSLDEIEKAMDRDTFLEAEEAMKFGLVDKVFET 216
>gi|395244781|ref|ZP_10421735.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
hominis CRBIP 24.179]
gi|394482987|emb|CCI82743.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
hominis CRBIP 24.179]
Length = 194
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP+EK+Q+ TERD +LSA EA ++GLID I+
Sbjct: 138 AANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLSAQEAKDYGLIDEIM 189
>gi|334121380|ref|ZP_08495450.1| ATP-dependent Clp protease proteolytic subunit [Microcoleus
vaginatus FGP-2]
gi|333455094|gb|EGK83755.1| ATP-dependent Clp protease proteolytic subunit [Microcoleus
vaginatus FGP-2]
Length = 202
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R+RI+F+GQ ++S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVDSDLANLIVAQLLFLDAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M+ I+P + T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNHIRPDICTICLGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQP+ ++++ TERD F+SA EA +
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEHLANHTGQPLSRIEEDTERDFFMSAEEAKD 180
Query: 260 FGLIDGILE 268
+GL+D +++
Sbjct: 181 YGLVDQVID 189
>gi|323498276|ref|ZP_08103278.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
DSM 21326]
gi|323316704|gb|EGA69713.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
DSM 21326]
Length = 208
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F++A +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMAADQAVEYGLVDAVL 203
>gi|405363134|ref|ZP_11026132.1| ATP-dependent Clp protease proteolytic subunit [Chondromyces
apiculatus DSM 436]
gi|397090077|gb|EJJ20963.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 203
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 114/175 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
DL S L ++RII +G P+N VA ++QL+ L + D D I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G AAS A++L G KG RYA+PN+RIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + R I+ + TG +E++++ TERD F+SA +A ++GLID ++E +
Sbjct: 138 QAKEILRLRSYINGLIVKHTGHTVERIEKDTERDYFMSAEDARQYGLIDEVVEKQ 192
>gi|354580806|ref|ZP_08999711.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
lactis 154]
gi|353203237|gb|EHB68686.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
lactis 154]
Length = 193
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+QL+ LA D D DI MY+N PGGS+ + IY
Sbjct: 19 DIYSRLLKDRIIFVGAAIDDAVANSVIAQLLFLAAEDPDRDIHMYINSPGGSVSAGFGIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP+V T+C G AAS AI+L G KG R A+PN+ IM++QP G G D+
Sbjct: 79 DTMQIIKPQVSTICTGFAASYGAILLLAGAKGKRLALPNSEIMIHQPLGGVQGQASDIAI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K+ ++ A TGQP E+V++ +RD F++A EA+E+G+ID I+
Sbjct: 139 TAKRILKTREKLVQITAERTGQPAERVERDMDRDYFMTAEEALEYGIIDEIV 190
>gi|416213190|ref|ZP_11622174.1| endopeptidase Clp [Neisseria meningitidis M01-240013]
gi|325144548|gb|EGC66847.1| endopeptidase Clp [Neisseria meningitidis M01-240013]
Length = 204
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 7 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 67 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186
Query: 258 MEFGLIDGILET 269
E+GLID ILE
Sbjct: 187 KEYGLIDQILEN 198
>gi|383754373|ref|YP_005433276.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366425|dbj|BAL83253.1| putative ATP-dependent Clp protease proteolytic subunit
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 203
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGGQIDDSVANVVVAQMLFLESEDPDKDIYLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A++L G KG R+A+PNAR+M++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICIGQAASMGAVLLTAGAKGKRFALPNARVMIHQPLGGAQGQSTDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E R I+ ++ + TG+ E++ TERD F++AAEA +G++D ++
Sbjct: 139 QAREIQRIRETINDIFVSSTGKTAEEINNDTERDNFMTAAEAKAYGIVDEVI 190
>gi|121635023|ref|YP_975268.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
meningitidis FAM18]
gi|161870184|ref|YP_001599354.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
meningitidis 053442]
gi|385324021|ref|YP_005878460.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
[Neisseria meningitidis 8013]
gi|385340219|ref|YP_005894091.1| endopeptidase Clp [Neisseria meningitidis G2136]
gi|385341772|ref|YP_005895643.1| endopeptidase Clp [Neisseria meningitidis M01-240149]
gi|385855371|ref|YP_005901884.1| endopeptidase Clp [Neisseria meningitidis M01-240355]
gi|385857382|ref|YP_005903894.1| endopeptidase Clp [Neisseria meningitidis NZ-05/33]
gi|416161423|ref|ZP_11606388.1| endopeptidase Clp [Neisseria meningitidis N1568]
gi|416170612|ref|ZP_11608364.1| endopeptidase Clp [Neisseria meningitidis OX99.30304]
gi|416177918|ref|ZP_11610287.1| endopeptidase Clp [Neisseria meningitidis M6190]
gi|416182797|ref|ZP_11612233.1| endopeptidase Clp [Neisseria meningitidis M13399]
gi|416187676|ref|ZP_11614288.1| endopeptidase Clp [Neisseria meningitidis M0579]
gi|416191946|ref|ZP_11616327.1| endopeptidase Clp [Neisseria meningitidis ES14902]
gi|416203926|ref|ZP_11620159.1| endopeptidase Clp [Neisseria meningitidis 961-5945]
gi|418288487|ref|ZP_12900968.1| endopeptidase Clp [Neisseria meningitidis NM233]
gi|418290736|ref|ZP_12902856.1| endopeptidase Clp [Neisseria meningitidis NM220]
gi|421538262|ref|ZP_15984439.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 93003]
gi|421557414|ref|ZP_16003319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 80179]
gi|421559199|ref|ZP_16005074.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 92045]
gi|421565657|ref|ZP_16011430.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM3081]
gi|421567663|ref|ZP_16013397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM3001]
gi|433467460|ref|ZP_20424914.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 87255]
gi|433469508|ref|ZP_20426929.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 98080]
gi|433473708|ref|ZP_20431069.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 97021]
gi|433482272|ref|ZP_20439532.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2006087]
gi|433484255|ref|ZP_20441481.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2002038]
gi|433486522|ref|ZP_20443717.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 97014]
gi|433492711|ref|ZP_20449804.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM586]
gi|433494845|ref|ZP_20451913.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM762]
gi|433497012|ref|ZP_20454050.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis M7089]
gi|433499074|ref|ZP_20456083.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis M7124]
gi|433501050|ref|ZP_20458036.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM174]
gi|433503280|ref|ZP_20460241.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM126]
gi|166201829|sp|A1KUD9.1|CLPP_NEIMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082461|sp|A9LZN9.1|CLPP_NEIM0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|120866729|emb|CAM10482.1| endopeptidase [Neisseria meningitidis FAM18]
gi|161595737|gb|ABX73397.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
meningitidis 053442]
gi|261392408|emb|CAX49950.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
[Neisseria meningitidis 8013]
gi|325128392|gb|EGC51275.1| endopeptidase Clp [Neisseria meningitidis N1568]
gi|325130325|gb|EGC53091.1| endopeptidase Clp [Neisseria meningitidis OX99.30304]
gi|325132488|gb|EGC55181.1| endopeptidase Clp [Neisseria meningitidis M6190]
gi|325134447|gb|EGC57092.1| endopeptidase Clp [Neisseria meningitidis M13399]
gi|325136185|gb|EGC58793.1| endopeptidase Clp [Neisseria meningitidis M0579]
gi|325138262|gb|EGC60831.1| endopeptidase Clp [Neisseria meningitidis ES14902]
gi|325142516|gb|EGC64917.1| endopeptidase Clp [Neisseria meningitidis 961-5945]
gi|325198463|gb|ADY93919.1| endopeptidase Clp [Neisseria meningitidis G2136]
gi|325201978|gb|ADY97432.1| endopeptidase Clp [Neisseria meningitidis M01-240149]
gi|325204312|gb|ADY99765.1| endopeptidase Clp [Neisseria meningitidis M01-240355]
gi|325208271|gb|ADZ03723.1| endopeptidase Clp [Neisseria meningitidis NZ-05/33]
gi|372201110|gb|EHP15077.1| endopeptidase Clp [Neisseria meningitidis NM220]
gi|372201785|gb|EHP15667.1| endopeptidase Clp [Neisseria meningitidis NM233]
gi|402317081|gb|EJU52620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 93003]
gi|402335052|gb|EJU70327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 80179]
gi|402336594|gb|EJU71854.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 92045]
gi|402343696|gb|EJU78842.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM3001]
gi|402344092|gb|EJU79234.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM3081]
gi|432202294|gb|ELK58358.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 87255]
gi|432203778|gb|ELK59828.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 98080]
gi|432210006|gb|ELK65972.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 97021]
gi|432216065|gb|ELK71948.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2006087]
gi|432220941|gb|ELK76758.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2002038]
gi|432221807|gb|ELK77611.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 97014]
gi|432228497|gb|ELK84197.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM586]
gi|432230048|gb|ELK85727.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM762]
gi|432233505|gb|ELK89132.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis M7089]
gi|432234908|gb|ELK90528.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis M7124]
gi|432236341|gb|ELK91950.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM174]
gi|432240045|gb|ELK95589.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM126]
Length = 204
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 7 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 67 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186
Query: 258 MEFGLIDGILET 269
E+GLID ILE
Sbjct: 187 KEYGLIDQILEN 198
>gi|298490862|ref|YP_003721039.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
azollae' 0708]
gi|298232780|gb|ADI63916.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
azollae' 0708]
Length = 201
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ ++S +A ++QL+ L D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDSGLANLIVAQLLFLDAEDPEKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKNIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++ A TGQP+E++ + TERD F+S EA E
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNGYLAQHTGQPLERIAEDTERDFFMSPEEAQE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|224068558|ref|XP_002302770.1| predicted protein [Populus trichocarpa]
gi|222844496|gb|EEE82043.1| predicted protein [Populus trichocarpa]
Length = 300
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 114/169 (67%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G ++ +A ++QL+ L +D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 115 SQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTM 174
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D+ Q N
Sbjct: 175 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDIQAN 234
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ A TGQ +EK+ Q T+RD F+SA EA ++GLIDG++
Sbjct: 235 EMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSAKEAKDYGLIDGVI 283
>gi|390567835|ref|ZP_10248149.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
terrae BS001]
gi|389940146|gb|EIN01961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
terrae BS001]
Length = 217
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 110/174 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RI+F+ P+N A ++QL+ L + + D DI Y+N PGGS+Y LAI+
Sbjct: 31 DIYSRLLRERIVFLVGPVNDQSASLIVAQLLFLESENPDKDISFYINSPGGSVYDGLAIF 90
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +LA G G R+A+PNARIM++QP G G DV+
Sbjct: 91 DTMQFIKPDVSTLCTGFAASMGTFLLAAGAPGKRFALPNARIMIHQPSGGGQGTASDVEI 150
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ + A TGQ I ++++ T+RD F+SA A +GL+D +L T
Sbjct: 151 QAKEVLYLRERLNTVLAERTGQSIAQIEKDTDRDNFMSADAARAYGLVDDVLTT 204
>gi|348026429|ref|YP_004766234.1| ATP-dependent Clp protease proteolytic subunit [Megasphaera
elsdenii DSM 20460]
gi|341822483|emb|CCC73407.1| ATP-dependent Clp protease proteolytic subunit [Megasphaera
elsdenii DSM 20460]
Length = 201
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L + D DI +Y+N PGG + + +AIY
Sbjct: 21 DIYSRLLKDRIVFLGGPIDDAVANSIIAQLLFLEAENPDKDIHLYINSPGGVVTAGMAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A+++L G KG R+A+P++++M++QP G G +++
Sbjct: 81 DTMQYIKPDVSTICVGSAASMASVLLTAGAKGKRFALPHSQVMIHQPLGGVQGQATEIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++ + + TGQPI+ +Q+ TERD F++A EA +GLID IL
Sbjct: 141 HAREILRMRKELNGILSKHTGQPIDVIQKDTERDNFMTAEEAKAYGLIDEIL 192
>gi|399060628|ref|ZP_10745703.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Novosphingobium sp. AP12]
gi|398037346|gb|EJL30540.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Novosphingobium sp. AP12]
Length = 221
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 113/175 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+FI + +A ++QL+ L + + DI MY+N PGG + + +AI
Sbjct: 38 FDIYSRLLRERIVFITGQVEDHMASLIVAQLLFLESENPSKDISMYINSPGGVVTAGMAI 97
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +IKP+V TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 98 HDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMVHQPSGGAQGMASDIE 157
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ +Y +TG+ ++ +++ +RD FL A EA+ FGL+D + ET
Sbjct: 158 IQAREILRMRRRLNDLYVKYTGKTLDAIEKAMDRDTFLEADEALAFGLVDKVFET 212
>gi|226310010|ref|YP_002769904.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
gi|226092958|dbj|BAH41400.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
Length = 193
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++QL+ LA D DI +Y+N PGGS+ + +AI
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDQVANAVVAQLLFLAAEDPKKDIHLYINSPGGSVTAGMAII 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++ P V T+C G+AAS A++L G G RYA+PNA +ML+QP GS G D+K
Sbjct: 79 DTMKFVAPDVSTICTGMAASMGAMLLVAGAPGKRYALPNAEVMLHQPWGGSQGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ + RH + + + TG+ +E++++ +RD FL+AAEA+E+GLID ++E
Sbjct: 139 AADRIMRHRHMLYTIISERTGKTVEQIEKDADRDYFLTAAEALEYGLIDKVIE 191
>gi|260768947|ref|ZP_05877881.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
CIP 102972]
gi|375131469|ref|YP_004993569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
furnissii NCTC 11218]
gi|260616977|gb|EEX42162.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
CIP 102972]
gi|315180643|gb|ADT87557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
furnissii NCTC 11218]
Length = 208
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTLCIGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + ++K++R+ A TGQP+E +++ T+RD F+SA +A+++GL+D +L
Sbjct: 152 HAQEILTIKNKLNRLLADHTGQPLEVIERDTDRDNFMSAQQAVDYGLVDALL 203
>gi|401565794|ref|ZP_10806612.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC6]
gi|400185000|gb|EJO19235.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC6]
Length = 203
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G G RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ EK+ TERD F+SA EA +GLID ++
Sbjct: 140 QAKEILRLREVGNNILARHTGQDPEKINVDTERDNFMSAEEAKAYGLIDEVV 191
>gi|449521259|ref|XP_004167647.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 3,
chloroplastic-like [Cucumis sativus]
Length = 339
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 113/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RIIF+G ++ M A ISQL+ L D DI +++N PGGS+ + + I
Sbjct: 95 LDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGI 154
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A +LA G KG R+ MPN R+M++QP +GG ++
Sbjct: 155 YDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMS 214
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + K++++++ TG+PIE+++ TERD F++ EA E+GLID +++
Sbjct: 215 IRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVID 268
>gi|347730688|ref|ZP_08863801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. A2]
gi|347520543|gb|EGY27675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. A2]
Length = 201
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ +A +QL+ L + + + +I +Y+N PGG++ + +AIY
Sbjct: 18 DIYSRLLKDRIILLGTPIDDQIASLICAQLLFLESENPEKEIYLYINSPGGAVTAGMAIY 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I V T+C G AAS A++LA GE GMR+A+PN+RIM++QP G G D+
Sbjct: 78 DTMQYITSPVATLCLGQAASMGALLLAAGEPGMRHALPNSRIMIHQPSGGFSGQASDIDI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + ++ + A TGQP+E+V TERD F+ AEA E+G+ID IL
Sbjct: 138 QAREVLRMKANLNDIMARHTGQPVERVADDTERDYFMGPAEAKEYGIIDSIL 189
>gi|399910853|ref|ZP_10779167.1| ATP-dependent Clp protease proteolytic subunit [Halomonas sp. KM-1]
Length = 206
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGG++ + +AIY
Sbjct: 29 DIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGAVTAGMAIY 88
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A++LAGG G RY++P++R+M++QP G G D++
Sbjct: 89 DTMQFIKPDVSTVCIGQAASMGALLLAGGASGKRYSLPHSRMMIHQPLGGYQGQAADIEI 148
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + R K++R+ A TGQ IE + + T+RD F+S +A E+GLID +L+
Sbjct: 149 HTREILGIRDKLNRILAHHTGQDIETIARDTDRDNFMSGTQATEYGLIDAVLD 201
>gi|427718283|ref|YP_007066277.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 7507]
gi|427350719|gb|AFY33443.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 7507]
Length = 201
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDNSIANLIVAQLLFLDADDSEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ A TGQPIE++ + TERD F+S EA E
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDYLAEHTGQPIERIAEDTERDFFMSPEEARE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|3599968|gb|AAC35489.1| clp protease [Arabidopsis thaliana]
Length = 310
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 114/174 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G ++ M A ISQL+ L D + DI +++N PGGSI + + I
Sbjct: 85 LDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGI 144
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A +LA G KG RY MPN+++M++QP +GG ++
Sbjct: 145 YDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMS 204
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + + K++++++ TG+P +++ T+RD FL+ EA E+GLID +++
Sbjct: 205 IRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 258
>gi|357059570|ref|ZP_09120412.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas infelix
ATCC 43532]
gi|355371647|gb|EHG18991.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas infelix
ATCC 43532]
Length = 203
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G G RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ EK+ TERD F+SA EA +GLID ++
Sbjct: 140 QAKEILRLREVGNNILAHHTGQDPEKINVDTERDNFMSAEEARAYGLIDEVV 191
>gi|383640602|ref|ZP_09953008.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas elodea
ATCC 31461]
Length = 218
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 111/174 (63%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+F+ + +A +QL+ L + + DI MY+N PGG + + +AI
Sbjct: 32 FDIYSRLLRERIVFVTGQVEDHMASLITAQLLFLESENPKKDIWMYINSPGGVVTAGMAI 91
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P+VGTVC G AAS + +LA GE G+R A+ NARIML+QP G+ G D++
Sbjct: 92 HDTMQYIRPRVGTVCIGQAASMGSFLLASGEPGLRVALTNARIMLHQPSGGAQGMASDIE 151
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R +++ +YA +TGQPIEK++ +RD F A EA FG++D + E
Sbjct: 152 IQAKEILRIRARMNALYAKYTGQPIEKIETTMDRDSFFEAEEAKAFGIVDEVYE 205
>gi|290969192|ref|ZP_06560717.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
genomosp. type_1 str. 28L]
gi|335049502|ref|ZP_08542492.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Megasphaera sp. UPII 199-6]
gi|290780698|gb|EFD93301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Megasphaera
genomosp. type_1 str. 28L]
gi|333762762|gb|EGL40247.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Megasphaera sp. UPII 199-6]
Length = 200
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
DL S L ++RIIF+ + +A I+QL+ L D D DI +Y+N PGG + + +AIY
Sbjct: 20 DLYSRLMKDRIIFLSGQVEDTMANSLIAQLLFLEAEDPDKDIYLYINSPGGVVTAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A+++LA G KG R+A+P++++M++QP G G D++
Sbjct: 80 DTMQYIKPDVSTICVGSAASMASVLLAAGTKGKRFALPHSQVMIHQPLGGVQGQATDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++ + AA TGQP++ +++ TERD FL+A +A +GLID IL
Sbjct: 140 HTREILRVRRELNGILAAHTGQPLDVIEKDTERDNFLTAEDAKHYGLIDEIL 191
>gi|254805112|ref|YP_003083333.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
meningitidis alpha14]
gi|421542615|ref|ZP_15988722.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM255]
gi|421554915|ref|ZP_16000854.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 98008]
gi|254668654|emb|CBA06317.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
meningitidis alpha14]
gi|402317445|gb|EJU52983.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM255]
gi|402332068|gb|EJU67399.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 98008]
Length = 204
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 7 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 67 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186
Query: 258 MEFGLIDGILET 269
E+GLID ILE
Sbjct: 187 KEYGLIDQILEN 198
>gi|168048812|ref|XP_001776859.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671715|gb|EDQ58262.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 112/167 (67%)
Query: 101 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 160
LF+ RII G ++ +A ++QL+ L D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 75 LFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIVMYVNSPGGSVTAGMAIFDTMRH 134
Query: 161 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 220
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 135 IRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQTDIEIQANEI 194
Query: 221 VISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++ A TGQP EK+ Q T+RD F+SA EA E+GLID ++
Sbjct: 195 LHHKANLNGYLAYHTGQPYEKIVQDTDRDFFMSAKEAKEYGLIDAVI 241
>gi|17231849|ref|NP_488397.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
7120]
gi|21759069|sp|Q8YP43.1|CLPP3_ANASP RecName: Full=Probable ATP-dependent Clp protease proteolytic
subunit 3; AltName: Full=Endopeptidase Clp 3
gi|17133493|dbj|BAB76056.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
7120]
Length = 197
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 123/189 (65%), Gaps = 3/189 (1%)
Query: 83 PLMPAVMTPGGPLDLSSV---LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
P +P M G D S+ L+R RIIF+G+ ++ +A + I+ ++ L + D DI +
Sbjct: 6 PKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYL 65
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + S LAIYD M IK V T+C G+AAS + +LA G KG R A+P++RIM+
Sbjct: 66 YINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIMI 125
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + E + RH+++++YA T QP+ K+++ +RD F+SA EAME
Sbjct: 126 HQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTSQPLAKIEKDMDRDFFMSAQEAME 185
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 186 YGLIDRVIE 194
>gi|167628597|ref|YP_001679096.1| ATP-dependent Clp protease proteolytic subunit [Heliobacterium
modesticaldum Ice1]
gi|167591337|gb|ABZ83085.1| ATP-dependent clp protease proteolytic subunit [Heliobacterium
modesticaldum Ice1]
Length = 199
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA I+QL+ L D D DI +Y+N PGG+I S AIY
Sbjct: 20 DIYSRLLKDRIIILGSAIDDNVANLIIAQLLFLEAEDPDKDIHLYINSPGGAITSGFAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M I+ V T+C G+AAS A +LA G KG RYA PNA IM++QP G G +++
Sbjct: 80 DTMQLIRCDVSTICVGMAASMGAFLLAAGAKGKRYASPNAEIMIHQPLGGVKGQATEIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ +R +++++ A TGQP+E++++ T+RD F+SA EA +G+IDG++E
Sbjct: 140 HARHILKTRDRLNKILADRTGQPLERIERDTDRDYFMSAEEAKAYGIIDGVME 192
>gi|84387735|ref|ZP_00990751.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
12B01]
gi|218710174|ref|YP_002417795.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
LGP32]
gi|407071670|ref|ZP_11102508.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
cyclitrophicus ZF14]
gi|417949951|ref|ZP_12593080.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
ATCC 33789]
gi|254763809|sp|B7VI00.1|CLPP_VIBSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|84377418|gb|EAP94285.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
12B01]
gi|218323193|emb|CAV19370.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
LGP32]
gi|342807381|gb|EGU42570.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
ATCC 33789]
Length = 208
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G R+ +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E V++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSADQAVEYGLVDSVL 203
>gi|429737530|ref|ZP_19271388.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 138 str. F0429]
gi|429152336|gb|EKX95166.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 138 str. F0429]
Length = 197
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +I+L G G RYA+P+ARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIHQPLGGAQGQSTDIQI 133
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R + + A TGQ EK+ TERD F+SA EA +GLID ++
Sbjct: 134 QAKEILRLREVGNNILARHTGQDPEKINVDTERDNFMSAEEAKAYGLIDEVV 185
>gi|325662430|ref|ZP_08151036.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 4_1_37FAA]
gi|331086220|ref|ZP_08335302.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|325471264|gb|EGC74488.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 4_1_37FAA]
gi|330406379|gb|EGG85893.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 193
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N + A ++QL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSASVIVAQLLFLEAEDPEKDIHLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G D+K
Sbjct: 79 DTMQFIKCDVSTTCIGMAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +R K++++ A TGQ + ++ TERD ++SA EA +GLID ++
Sbjct: 139 VADHILKTRTKLNKILAENTGQDLSVIEVDTERDNYMSAEEAKAYGLIDEVI 190
>gi|13899067|gb|AAK48955.1|AF370528_1 ATP-dependent Clp protease; nClpP3 [Arabidopsis thaliana]
gi|18377550|gb|AAL66941.1| ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
Length = 309
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 114/174 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G ++ M A ISQL+ L D + DI +++N PGGSI + + I
Sbjct: 84 LDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGI 143
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A +LA G KG RY MPN+++M++QP +GG ++
Sbjct: 144 YDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMS 203
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + + K++++++ TG+P +++ T+RD FL+ EA E+GLID +++
Sbjct: 204 IRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257
>gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum
seropedicae SmR1]
gi|124483356|emb|CAM32551.1| ATP-dependent Clp protease (proteolytic subunit) protein
[Herbaspirillum seropedicae]
gi|300074680|gb|ADJ64079.1| ATP-dependent Clp protease (proteolytic subunit) protein
[Herbaspirillum seropedicae SmR1]
Length = 208
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +Y+N PGGS+ + +AI+
Sbjct: 33 DIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISLYINSPGGSVSAGMAIF 92
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA G KG R+++PN+RIM++QP G+ G D++
Sbjct: 93 DTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEI 152
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ + A TG+ +E++ + T+RD F+SA A E+GLID +L
Sbjct: 153 QAREILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSADAAAEYGLIDKVL 204
>gi|18408572|ref|NP_564880.1| ATP-dependent Clp protease proteolytic subunit 3 [Arabidopsis
thaliana]
gi|75314059|sp|Q9SXJ6.1|CLPP3_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 3,
chloroplastic; AltName: Full=Endopeptidase ClpP3;
Short=nClpP3; AltName: Full=nClpP4; Flags: Precursor
gi|12322291|gb|AAG51173.1|AC079285_6 ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
gi|12597762|gb|AAG60075.1|AC013288_9 ATP-dependent Clp protease (nClpP3) [Arabidopsis thaliana]
gi|5360591|dbj|BAA82067.1| nClpP3 [Arabidopsis thaliana]
gi|21592949|gb|AAM64899.1| ATP-dependent Clp protease proteolytic subunit ClpP3 [Arabidopsis
thaliana]
gi|332196422|gb|AEE34543.1| ATP-dependent Clp protease proteolytic subunit 3 [Arabidopsis
thaliana]
Length = 309
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 114/174 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G ++ M A ISQL+ L D + DI +++N PGGSI + + I
Sbjct: 84 LDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGI 143
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A +LA G KG RY MPN+++M++QP +GG ++
Sbjct: 144 YDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMS 203
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + + K++++++ TG+P +++ T+RD FL+ EA E+GLID +++
Sbjct: 204 IRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257
>gi|255638490|gb|ACU19554.1| unknown [Glycine max]
Length = 322
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 113/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RIIF+G ++ M A ISQL+ L D DI +++N PGGS+ + + I
Sbjct: 79 LDATNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINPPGGSVTAGMGI 138
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A ILA G KG RY MPN+R+M++QP +GG ++
Sbjct: 139 YDAMKLCKADVSTVCLGLAASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATEMS 198
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + KI+++ + TG+P E+++ T+RD F++ EA E+GL+DG+++
Sbjct: 199 IRIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFMNPWEAKEYGLVDGVID 252
>gi|160893842|ref|ZP_02074625.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50]
gi|156864494|gb|EDO57925.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium sp. L2-50]
Length = 193
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N A I+QL+ L + D DI +Y+N PGGS+ + L IY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDTSASIVIAQLLFLESEDPSKDISLYINSPGGSVTAGLGIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +LAGG KG R+A+PNA IM++QP GS G +++
Sbjct: 79 DTMQYIKCDVSTICCGMAASMGAFLLAGGAKGKRFALPNAEIMIHQPSGGSQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ ++ K++RM + TG+P E + TERD ++SA EA +GLID ++
Sbjct: 139 AAKHILKTKEKLNRMLSENTGKPYETIAADTERDNWMSAEEACAYGLIDSVI 190
>gi|295425564|ref|ZP_06818253.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
amylolyticus DSM 11664]
gi|295064740|gb|EFG55659.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
amylolyticus DSM 11664]
Length = 195
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLHGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGLAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+++ TGQP++K+Q+ TERD +L+A EA E+GLID I+
Sbjct: 138 AANEILKSRKKINKILHETTGQPLDKIQKDTERDNYLTAEEAKEYGLIDEIM 189
>gi|225437581|ref|XP_002277104.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5,
chloroplastic isoform 1 [Vitis vinifera]
gi|297743987|emb|CBI36957.3| unnamed protein product [Vitis vinifera]
Length = 289
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%)
Query: 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 158
S LF++RII G ++ +A ++QL+ L +D D DI+MY+N PGGS+ + +AI+D M
Sbjct: 105 SQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPDKDIVMYVNSPGGSVTAGMAIFDTM 164
Query: 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 218
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D+ Q N
Sbjct: 165 RHIRPDVSTVCVGLAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQAN 224
Query: 219 EAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + ++ + TGQ +EK+ Q T+RD F+SA EA E+GLIDG++
Sbjct: 225 EMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 273
>gi|225453100|ref|XP_002271649.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 3,
chloroplastic [Vitis vinifera]
Length = 320
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 116/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G ++ M A ISQL+ L D++ DI +++N PGGS+ + L I
Sbjct: 80 LDTTNMLLRQRIVFLGSQVDDMTADLVISQLLFLDAEDQEKDIKLFINSPGGSVTAGLGI 139
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A +LA G KG R+ MPN+R+M++QP +GG ++
Sbjct: 140 YDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNSRVMIHQPLGTAGGKATEMG 199
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + + K++++ + TG+P ++++ T+RD F++A EA E+GLID +++
Sbjct: 200 IRIREMMYHKIKLNKILSRITGKPEQQIEADTDRDNFMNAWEAKEYGLIDAVID 253
>gi|393773236|ref|ZP_10361634.1| ATP-dependent Clp protease, protease subunit [Novosphingobium sp.
Rr 2-17]
gi|392721116|gb|EIZ78583.1| ATP-dependent Clp protease, protease subunit [Novosphingobium sp.
Rr 2-17]
Length = 221
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 113/175 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RI+FI + +A ++QL+ L + + DI MY+N PGG + + +AI
Sbjct: 38 FDIYSRLLRERIVFITGAVEDHMASLIVAQLLFLESENPAKDISMYINSPGGVVTAGMAI 97
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +IKP+V TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 98 HDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMVHQPSGGAQGMASDIE 157
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ +Y +TG+ ++ +++ +RD FL A EA+ FGL+D + ET
Sbjct: 158 IQAREILRMRRRLNDLYVKYTGKTLDAIEKAMDRDTFLEADEALAFGLVDKVFET 212
>gi|334118044|ref|ZP_08492134.1| ATP-dependent Clp protease proteolytic subunit [Microcoleus
vaginatus FGP-2]
gi|333460029|gb|EGK88639.1| ATP-dependent Clp protease proteolytic subunit [Microcoleus
vaginatus FGP-2]
Length = 197
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 126/190 (66%), Gaps = 5/190 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P +P M PGG +++ L+R RIIF+G+ ++ +A + I+ ++ L + D DI+
Sbjct: 6 PKVPYKM-PGGYDTQWINIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDSGKDII 64
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGG + + +AI+D M IK V T+C G+AAS + +LA G KG R A+P++RIM
Sbjct: 65 LYINSPGGMVSAGMAIFDTMQHIKSDVVTICVGLAASMGSFLLAAGAKGKRLALPHSRIM 124
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D++ + E + RH+++ +YA TG+PIEK+++ +RD F+SA EA
Sbjct: 125 IHQPSGGTRGQATDIQIEAKEILRLRHELNNIYAKNTGKPIEKIEKDMDRDYFMSAQEAK 184
Query: 259 EFGLIDGILE 268
E+GLID ++E
Sbjct: 185 EYGLIDRVIE 194
>gi|427393848|ref|ZP_18887488.1| ATP-dependent Clp protease proteolytic subunit [Alloiococcus otitis
ATCC 51267]
gi|425730326|gb|EKU93163.1| ATP-dependent Clp protease proteolytic subunit [Alloiococcus otitis
ATCC 51267]
Length = 197
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 124/190 (65%), Gaps = 4/190 (2%)
Query: 84 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ +P G D+ S L ++RII +G I++ VA +SQL+ L D D DI +
Sbjct: 3 LVPTVIEQSPKGERAYDIYSRLLKDRIIILGDAIDNNVANSVVSQLLFLDAQDSDKDIYL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M++IK V T+ G+AAS +++ G KG R+A+PN+ IM+
Sbjct: 63 YVNSPGGSVTAGLAIYDTMNFIKADVQTIVIGLAASMGSVLATAGAKGKRFALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ + +R +++++ A TGQ +E + + T+RD F++A EA+E
Sbjct: 123 HQPLGGAQGQATEIEIAAKNILRTRERLNKILAEATGQDLETIDRDTDRDYFMTAEEALE 182
Query: 260 FGLIDGILET 269
+GLID I+ET
Sbjct: 183 YGLIDDIMET 192
>gi|323495056|ref|ZP_08100145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
LMG 20546]
gi|323310713|gb|EGA63888.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
LMG 20546]
Length = 208
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G R+ +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRHVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F+SA +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDSVL 203
>gi|392551110|ref|ZP_10298247.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
spongiae UST010723-006]
Length = 203
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + + DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLTGQVEDNMANLIVAQLLFLESENPEKDIFIYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP + TVC G AAS A +L+GG KG R+ +PN+R+M++QP G G D +
Sbjct: 88 DTMKFIKPNISTVCIGQAASMGAFLLSGGTKGKRFCLPNSRVMIHQPLGGFQGQASDFEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++R+ A TGQP+E V T+RD F+SA +A+++GL+DGIL
Sbjct: 148 HAKEILSIKDKLNRLMAEHTGQPLEVVSNDTDRDNFMSAQQAVDYGLVDGIL 199
>gi|357633385|ref|ZP_09131263.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. FW1012B]
gi|357581939|gb|EHJ47272.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. FW1012B]
Length = 204
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 117/189 (61%), Gaps = 4/189 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P +P V+ G D+ S L R+RII +G ++ VA +QL+ L + D + +I
Sbjct: 2 PTIPIVIETTGRSERAYDIYSRLLRDRIILLGSAVDDHVANLICAQLLFLESEDPEKEIF 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
MY+N PGGS+ + LAIYD M ++ PKV T+C G AAS A++L G GMRYA+P++RIM
Sbjct: 62 MYINSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALLLCAGATGMRYALPHSRIM 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G G D+ E + R ++ + A TGQ IEKV+ T+RD F++A EA+
Sbjct: 122 IHQPMGGFQGQATDIDIHAREILRIRESLNEIMARHTGQDIEKVRVDTDRDYFMNADEAV 181
Query: 259 EFGLIDGIL 267
+GLID +L
Sbjct: 182 TYGLIDKVL 190
>gi|388257267|ref|ZP_10134446.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio sp. BR]
gi|387938434|gb|EIK44986.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio sp. BR]
Length = 208
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 112/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + R+IF+ P+ +A ++QL+ L + D DI +Y+N PGGS+ + ++I
Sbjct: 27 FDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSI 86
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V T+C G A S A +L G KG R+ +PN+R+M++QP G+ G D+
Sbjct: 87 YDTMQFIKPDVSTMCIGQACSMGAFLLNAGTKGKRFCLPNSRVMIHQPSGGAQGQASDIH 146
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + R +++ + A +GQPIEK++ TERD F+SA +A ++GLID ++E
Sbjct: 147 IQAQEILKIRSRLNELMAFHSGQPIEKIELDTERDNFMSAQQAKDYGLIDSVIE 200
>gi|205375127|ref|ZP_03227918.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
coahuilensis m4-4]
Length = 198
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ L T + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLETENPEKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GE G R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQYIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++ + + TGQP++ + Q T+RD F++A A+E+GLID I+
Sbjct: 139 AAKRILFLREKLNTILSERTGQPLDVIAQDTDRDNFMTAERALEYGLIDKII 190
>gi|194337396|ref|YP_002019190.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309873|gb|ACF44573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelodictyon
phaeoclathratiforme BU-1]
Length = 225
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 131/212 (61%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISG---KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHARKMYSGAIEQGITNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P+V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPEVSTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R ++ + A TG
Sbjct: 125 GAFLLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIVIQAREIEKIRTLLEELLAKHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++++++ +ERDR+++A EA+++G+ID I E
Sbjct: 185 KDVKQIREDSERDRWMNAPEALDYGIIDAIFE 216
>gi|407691666|ref|YP_006816455.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus suis
H91-0380]
gi|407387723|gb|AFU18216.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus suis
H91-0380]
Length = 196
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFLNGEVEDHMANLIVAQLLFLESEDPEKDIYLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G A S A +L+GG KG R+A+P+AR+M++QP G+ G D++
Sbjct: 79 DTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPHARVMIHQPLGGARGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + + R A +GQP EKV TERD F+SA EA E+GLID +L
Sbjct: 139 QAQEILKLKEMLTRRMAEHSGQPFEKVAADTERDNFMSAFEAAEYGLIDKVL 190
>gi|386815716|ref|ZP_10102934.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiothrix
nivea DSM 5205]
gi|386420292|gb|EIJ34127.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiothrix
nivea DSM 5205]
Length = 204
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R R+IF + +A ++QL+ L + + + DI +Y+N PGG I S +AI
Sbjct: 28 FDIYSRLLRERVIFCVGEVEDYMANLIVAQLLFLESENPEKDIHLYINSPGGVITSGMAI 87
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V T+C G AAS A++LAGG KG R+A+P++R+M++QP G G D++
Sbjct: 88 YDTMQFIKPDVSTLCIGQAASMGAVLLAGGAKGKRFALPHSRVMIHQPLGGFRGQASDIE 147
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++R+ A+ TGQP+E+++Q T+RD F+ A A E+GLID +L
Sbjct: 148 IHAREILKMREELNRVLASHTGQPLERIEQDTDRDNFMDAPTACEYGLIDEVL 200
>gi|343503058|ref|ZP_08740893.1| ATP-dependent Clp protease proteolytic subunit [Vibrio tubiashii
ATCC 19109]
gi|418480506|ref|ZP_13049564.1| ATP-dependent Clp protease proteolytic subunit [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342812728|gb|EGU47720.1| ATP-dependent Clp protease proteolytic subunit [Vibrio tubiashii
ATCC 19109]
gi|384571898|gb|EIF02426.1| ATP-dependent Clp protease proteolytic subunit [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 208
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERIIFLTGQVEDQMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G R+ +PN+R+M++QP G G D++
Sbjct: 92 DTMQYIKPNVSTVCMGQACSMGAFLLAGGAPGKRHVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F+S+ +A+E+GL+D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMSSDQAVEYGLVDSVL 203
>gi|86148885|ref|ZP_01067136.1| ATP-dependent Clp protease proteolytic subunit, partial [Vibrio sp.
MED222]
gi|85833328|gb|EAQ51535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222]
Length = 198
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 22 DIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIY 81
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G R+ +PN+R+M++QP G G D++
Sbjct: 82 DTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMIHQPLGGFQGQASDIQI 141
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E V++ T+RD F+SA +A+E+GL+D +L
Sbjct: 142 HAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSADQAVEYGLVDSVL 193
>gi|300869048|ref|ZP_07113650.1| ATP-dependent Clp protease proteolytic subunit [Oscillatoria sp.
PCC 6506]
gi|300332959|emb|CBN58844.1| ATP-dependent Clp protease proteolytic subunit [Oscillatoria sp.
PCC 6506]
Length = 197
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 117/174 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ + L + RIIF+GQ + +A R ++ L+ L + D I +Y+N PGGS+ + +AI
Sbjct: 21 IDIYTRLSQERIIFLGQEVTDGLANRIVAYLLYLDSDDSTKPIFIYINSPGGSVTAGMAI 80
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +IK +V T+C G AAS A +LA G KG R A+P+ARIM++QP G+ G D++
Sbjct: 81 FDTMQYIKSEVVTMCVGQAASMGAFLLAAGTKGKRLALPHARIMIHQPLGGTRGQATDIQ 140
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ E + R +++ M A TGQ +EK+Q+ T+RD F+SAAEA E+GLID ++E
Sbjct: 141 IEAKEILRVRQQLNEMLAKRTGQTLEKIQKDTDRDYFMSAAEAKEYGLIDQVIE 194
>gi|59711403|ref|YP_204179.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
ES114]
gi|197335304|ref|YP_002155557.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
MJ11]
gi|423685525|ref|ZP_17660333.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
SR5]
gi|67460143|sp|Q5E6Q5.1|CLPP_VIBF1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706555|sp|B5FBZ8.1|CLPP_VIBFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|59479504|gb|AAW85291.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Vibrio fischeri ES114]
gi|197316794|gb|ACH66241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
fischeri MJ11]
gi|371495437|gb|EHN71033.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
SR5]
Length = 207
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++ + A TGQP+E ++Q T+RD F+SA +A+++GL+D +L
Sbjct: 152 HAQEILTIKKKLNTLLAEHTGQPLEVIEQDTDRDNFMSADDAVKYGLVDAVL 203
>gi|423642205|ref|ZP_17617823.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD166]
gi|401277148|gb|EJR83092.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD166]
Length = 193
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +H I++M A TGQPIE+V TERD F++A EA E+G++D ++
Sbjct: 139 TAKRILKLKHDINKMIAEKTGQPIERVAHNTERDYFMTAEEAKEYGIVDDVV 190
>gi|336054467|ref|YP_004562754.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
kefiranofaciens ZW3]
gi|333957844|gb|AEG40652.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
kefiranofaciens ZW3]
Length = 194
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP+EK+Q+ TERD +L+A +A E+GLID I+
Sbjct: 138 AANEILKSRKKINEILHETTGQPLEKIQKDTERDNYLTAEQAKEYGLIDDIM 189
>gi|291548434|emb|CBL21542.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
sp. SR1/5]
Length = 193
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N + A ++QL+ L D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSANLIVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +L+ G KG RYA+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTICLGMAASMGAFLLSSGAKGKRYALPNSTIMIHQPSGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ ++ K++ + +A TGQP+E V++ T+RD +++A EA +GLIDG++
Sbjct: 139 VADQIAKTKKKLNEILSANTGQPLEIVEKDTDRDNYMTAEEAKAYGLIDGVV 190
>gi|414161436|ref|ZP_11417696.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410876332|gb|EKS24243.1| ATP-dependent Clp protease proteolytic subunit [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 194
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +R K++++ + TGQ IE++++ T+RD FL+A EA E+GLID +++ E
Sbjct: 139 AATHILKTRAKLNKILSERTGQSIEQIEKDTDRDNFLTADEAKEYGLIDEVMQPE 193
>gi|402549260|ref|ZP_10846113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86C]
Length = 204
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 123/195 (63%), Gaps = 4/195 (2%)
Query: 78 KNDNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
K+ L+P V+ TP G D+ S L + R+IF+ P+ ++ ++QL+ L + +
Sbjct: 2 KDIQSALVPMVIEQTPRGERSFDIYSRLLKERVIFLSGPVEDYMSNLIVAQLLFLESENP 61
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
+ DI +Y+N PGGSI + LAIYD M +I P + T+C G AAS AI+LAGGEKG R+A+P
Sbjct: 62 EKDISIYINSPGGSISAGLAIYDTMQFISPSISTLCIGQAASMGAILLAGGEKGKRFALP 121
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
N+RIM++QP G G D + E + + ++ + A TGQ I+K+++ T+RD FL
Sbjct: 122 NSRIMIHQPLGGFQGQASDFEIHAKEILHMKKVVNEILAKHTGQTIKKIEKDTDRDNFLD 181
Query: 254 AAEAMEFGLIDGILE 268
A+++GL+D +L+
Sbjct: 182 TTAAIDYGLVDNVLD 196
>gi|85859380|ref|YP_461582.1| ATP-dependent Clp protease proteolytic subunit [Syntrophus
aciditrophicus SB]
gi|108935920|sp|Q2LTK5.1|CLPP_SYNAS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|85722471|gb|ABC77414.1| ATP-dependent Clp protease proteolytic subunit [Syntrophus
aciditrophicus SB]
Length = 194
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+G PI+ VA I+QL+ L + D D +I
Sbjct: 3 LIPMVVQQDGRGERAYDIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFF 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
YLN PGG I S +AIYD M +IKP V TVC G AAS A++LA GE+G R A+P++RI++
Sbjct: 63 YLNTPGGHISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D+ Q E + + ++ + A T QP+++++ TERD ++++ +A E
Sbjct: 123 HQPLGGFQGQATDIDIQAREILRLKDELSLILADLTNQPLDRIKTDTERDYYMTSQQAKE 182
Query: 260 FGLIDGIL 267
+G+ID I+
Sbjct: 183 YGIIDEII 190
>gi|259501068|ref|ZP_05743970.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
gi|302190483|ref|ZP_07266737.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
AB-1]
gi|309803807|ref|ZP_07697892.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LactinV 11V1-d]
gi|309804605|ref|ZP_07698670.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LactinV 09V1-c]
gi|309805854|ref|ZP_07699889.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LactinV 03V1-b]
gi|309808282|ref|ZP_07702189.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LactinV 01V1-a]
gi|309809384|ref|ZP_07703246.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners SPIN 2503V10-D]
gi|312870768|ref|ZP_07730874.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LEAF 3008A-a]
gi|312873057|ref|ZP_07733116.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LEAF 2062A-h1]
gi|312874331|ref|ZP_07734362.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LEAF 2052A-d]
gi|312875077|ref|ZP_07735094.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LEAF 2053A-b]
gi|315653872|ref|ZP_07906788.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
ATCC 55195]
gi|325913268|ref|ZP_08175636.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners UPII 60-B]
gi|329920382|ref|ZP_08277114.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners SPIN 1401G]
gi|349611768|ref|ZP_08890998.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus sp.
7_1_47FAA]
gi|259167762|gb|EEW52257.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
gi|308164041|gb|EFO66303.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LactinV 11V1-d]
gi|308165997|gb|EFO68215.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LactinV 09V1-c]
gi|308167763|gb|EFO69907.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LactinV 03V1-b]
gi|308168485|gb|EFO70596.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LactinV 01V1-a]
gi|308170295|gb|EFO72326.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners SPIN 2503V10-D]
gi|311089367|gb|EFQ47794.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LEAF 2053A-b]
gi|311090097|gb|EFQ48510.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LEAF 2052A-d]
gi|311091290|gb|EFQ49675.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LEAF 2062A-h1]
gi|311093644|gb|EFQ51982.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners LEAF 3008A-a]
gi|315488568|gb|EFU78214.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus iners
ATCC 55195]
gi|325477371|gb|EGC80515.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners UPII 60-B]
gi|328936058|gb|EGG32511.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lactobacillus iners SPIN 1401G]
gi|348608233|gb|EGY58218.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus sp.
7_1_47FAA]
Length = 194
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++R+I + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRVIMLSGEINDTMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASILLTAGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP+EK+Q TERD++L+A EA ++GLID IL
Sbjct: 138 AANEILKSREKINSILHETTGQPLEKIQADTERDKYLTAQEAKDYGLIDEIL 189
>gi|194098886|ref|YP_002001950.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae NCCP11945]
gi|385335915|ref|YP_005889862.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae TCDC-NG08107]
gi|193934176|gb|ACF30000.1| putative endopeptidase [Neisseria gonorrhoeae NCCP11945]
gi|317164458|gb|ADV07999.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 209
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 12 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 72 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191
Query: 258 MEFGLIDGILET 269
E+GLID +LE
Sbjct: 192 KEYGLIDQVLEN 203
>gi|393718797|ref|ZP_10338724.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas
echinoides ATCC 14820]
Length = 224
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 114/174 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+ + +A +QL+ L + + DI MY+N PGG + + +AI
Sbjct: 33 FDIYSRLLRERIIFVTGGVEDHMAAVITAQLLFLESENPKKDIFMYINSPGGVVTAGMAI 92
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M +I+P+VGTVC G AAS + +LA GE GMR A+ NARIM++QP G+ G D++
Sbjct: 93 HDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTNARIMIHQPSGGAQGMASDIQ 152
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E +++++ +YA +TG+PIE++++ +RD FL A EA +FGL+D + +
Sbjct: 153 IQAKEIQRIKNRMNSLYAQYTGKPIEEIERAMDRDTFLEAHEAKDFGLVDQVFD 206
>gi|384045593|ref|YP_005493610.1| ATP-dependent Clp protease proteolytic subunit [Bacillus megaterium
WSH-002]
gi|345443284|gb|AEN88301.1| ATP-dependent Clp protease proteolytic subunit [Bacillus megaterium
WSH-002]
Length = 193
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN +A ++QL+ LA D DI +Y+N PGGS + AIY
Sbjct: 19 DIYSRLLKDRIILIGDEINDHIANSVVAQLLFLAADDPKKDISLYINSPGGSTSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G+AAS A++L G KG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQYIEPDVQTICTGMAASFGALLLLAGAKGKRYALPNSEVMIHQPLGGARGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + I+ + + TGQP+EKV TERD F+SA EA +G+IDGIL
Sbjct: 139 SARRILKLKQHINEIISKRTGQPVEKVAHDTERDYFMSAEEAKTYGIIDGIL 190
>gi|254670503|emb|CBA06249.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
meningitidis alpha153]
Length = 209
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 12 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 72 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191
Query: 258 MEFGLIDGILET 269
E+GLID +LE
Sbjct: 192 KEYGLIDQVLEN 203
>gi|312880128|ref|ZP_07739928.1| ATP-dependent Clp protease proteolytic subunit ClpP [Aminomonas
paucivorans DSM 12260]
gi|310783419|gb|EFQ23817.1| ATP-dependent Clp protease proteolytic subunit ClpP [Aminomonas
paucivorans DSM 12260]
Length = 201
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RI+F+G+ I +A ++QL+ L + D + D+ +
Sbjct: 11 LVPYVVEQTGRGERTYDIYSRLLKDRIVFLGEEIEEHMANLVVAQLLFLESEDPEKDVYL 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + + +AIYD M +IK V T+C G AAS AA++LAGG KG R A+P+ARIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQYIKCPVSTICTGQAASMAAVLLAGGAKGKRIALPHARIMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R ++++ TGQP+E+++ T+RD F+SA EA+
Sbjct: 131 HQPLGGAQGQATDIEIQAKEILRLREVLNQILVDHTGQPVERIKADTDRDFFMSAPEAVA 190
Query: 260 FGLIDGILE 268
+GL+D +++
Sbjct: 191 YGLVDKVID 199
>gi|303250639|ref|ZP_07336836.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302650627|gb|EFL80786.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 196
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++Q++ L D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
M++IKP V T+C G A S A +L+GG KG R+A+PNAR+M++QP G+ G D++
Sbjct: 79 ATMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + + R A +GQP EKV TERD F+SA EAME+GLID +L
Sbjct: 139 QAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVL 190
>gi|288554081|ref|YP_003426016.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
pseudofirmus OF4]
gi|288545241|gb|ADC49124.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
pseudofirmus OF4]
Length = 195
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 115/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLQAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKPKV T+C G+AAS A +LA GE G R A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMNFIKPKVSTICIGMAASMGAFLLAAGEPGKRLALPNSEVMIHQPLGGTRGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ R ++++ A TGQP+E + + T+RD F++A+ A E+GLID ++ +
Sbjct: 139 HARRIIEMRETLNKILAERTGQPLEVIARDTDRDNFMTASRAKEYGLIDEVISS 192
>gi|403379308|ref|ZP_10921365.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JC66]
Length = 194
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+FIG I+ VA I+QL+ LA D + DI +Y+N PGGSI + + I+
Sbjct: 19 DIYSRLLKDRIVFIGSAIDDDVANLVIAQLLFLAAQDPEQDIHLYINSPGGSITAGMGIF 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS +++L G G RYA+PN+ +M++QP G G D+K
Sbjct: 79 DTMHHIKPDVSTICVGMAASMGSLLLTAGAPGKRYALPNSEVMIHQPLGGVRGQAADIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + +R K++R+Y T QP+E +++ T+RD F++A EA E+G+ID ++
Sbjct: 139 HADWIIRTREKLNRIYVERTKQPLEVIERDTDRDFFMTAEEAKEYGIIDKVI 190
>gi|380020948|ref|XP_003694337.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-like
[Apis florea]
Length = 204
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 27 DIYSRLLKDRIIMLSGEINDDMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 86
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 87 DTMNFIKSDVSTIAIGMAASMASILLTSGAKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 146
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+++ TGQP+EK+Q+ TERD +L+A EA ++GLID I+
Sbjct: 147 AANEILKSREKINKILHETTGQPLEKIQKDTERDNYLTAEEAKDYGLIDEIM 198
>gi|282899048|ref|ZP_06307029.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
gi|281195964|gb|EFA70880.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
Length = 201
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 121/189 (64%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKNIRPNVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + K++ A TGQP +++ + TERD F+S EA E
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNEYLAEHTGQPFDRIAEDTERDFFMSPQEARE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDQVID 189
>gi|225028671|ref|ZP_03717863.1| hypothetical protein EUBHAL_02950 [Eubacterium hallii DSM 3353]
gi|224953981|gb|EEG35190.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium hallii DSM 3353]
Length = 194
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 114/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G+ +N A +SQL+ L + D + DI +Y+ PGGS+ + +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDTTASLIVSQLLFLESEDPEKDISLYIMSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++K V T+C G+AAS A +LAGG KG R A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFVKCDVSTICMGMAASMGAFLLAGGAKGKRLALPNSEIMIHQPSGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++R+ A TGQP EK+ Q TERD +++A +A +GLID ++E
Sbjct: 139 VAEHILHTKEKLNRILAENTGQPYEKIVQDTERDNYMTAEQAKAYGLIDAVVE 191
>gi|153839648|ref|ZP_01992315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AQ3810]
gi|260902813|ref|ZP_05911208.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AQ4037]
gi|417320363|ref|ZP_12106909.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus 10329]
gi|433657174|ref|YP_007274553.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus BB22OP]
gi|149746838|gb|EDM57826.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AQ3810]
gi|308108649|gb|EFO46189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AQ4037]
gi|328473326|gb|EGF44174.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus 10329]
gi|432507862|gb|AGB09379.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus BB22OP]
Length = 208
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++ + A TGQP+E +++ T+RD F+SA +A+E+G++D +L
Sbjct: 152 HAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAVEYGIVDAVL 203
>gi|88860444|ref|ZP_01135082.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
tunicata D2]
gi|88817642|gb|EAR27459.1| ATP-dependent Clp protease proteolytic subunit [Pseudoalteromonas
tunicata D2]
Length = 205
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + + DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLTGQVEDHMANLIVAQLLFLESENPEKDIFIYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V TVC G AAS A +L+GG KG R+ +PN+R+M++QP G G D +
Sbjct: 88 DTMNFIKPNVSTVCMGQAASMGAFLLSGGTKGKRFCLPNSRVMIHQPLGGFQGQASDFEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++R+ A TGQPIE + + T+RD F+S A+A+E+G++D +L
Sbjct: 148 HAREILSIKDKLNRLLAEHTGQPIEVISRDTDRDNFMSGAQAVEYGIVDAVL 199
>gi|434388321|ref|YP_007098932.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chamaesiphon
minutus PCC 6605]
gi|428019311|gb|AFY95405.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chamaesiphon
minutus PCC 6605]
Length = 215
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 112/174 (64%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
DL S L R RIIF+G +N VA ++Q++ L D + DI +Y+N PGGSI + +AI
Sbjct: 40 FDLYSRLLRERIIFLGGEVNDGVADTLVAQMLFLEAEDPEKDIQLYINSPGGSITAGMAI 99
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M I+P V T C+G+AAS A +LA G G R ++PN+RIM++QP G+ G D++
Sbjct: 100 YDTMQQIRPDVATTCYGLAASMGAFLLASGAPGKRRSLPNSRIMIHQPLGGAQGQAVDIE 159
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + ++ ++ + A TGQPIE++ + TERD ++S AE +GLID +E
Sbjct: 160 IQAREILYLKNHLNGLLAYHTGQPIERIAEDTERDFWMSPAETQAYGLIDETIE 213
>gi|399049433|ref|ZP_10740394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
gi|433545929|ref|ZP_20502269.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
gi|398052868|gb|EJL45105.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
gi|432182773|gb|ELK40334.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
Length = 193
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++QL+ LA D DI +Y+N PGGS+ + +AI
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDQVANAVVAQLLFLAAEDPKKDIHLYINSPGGSVTAGMAII 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++ P V T+C G+AAS A++L G G RYA+PNA +M++QP GS G D+K
Sbjct: 79 DTMQFVAPDVSTICTGMAASMGAMLLVSGAPGKRYALPNAEVMIHQPWGGSQGQASDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ R + + + TG+P+EK+++ +RD F+SAAEA+E+GLID ++E
Sbjct: 139 AAERILKHRSMLYSIISERTGKPVEKIEKDADRDYFMSAAEALEYGLIDNVIE 191
>gi|284036063|ref|YP_003385993.1| endopeptidase Clp [Spirosoma linguale DSM 74]
gi|283815356|gb|ADB37194.1| Endopeptidase Clp [Spirosoma linguale DSM 74]
Length = 229
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 118/176 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ S L +RIIF+G P++ +A ++QL+ L + D DILMYLN PGGS+Y+ L I
Sbjct: 53 VDVFSRLMADRIIFMGLPVDDNIANIIVAQLLFLESADPKKDILMYLNSPGGSVYAGLGI 112
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +++P V TVC +AAS A++LAGG G R A+P+AR+M++QP G+ G D++
Sbjct: 113 YDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPSGGAQGQSVDIE 172
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
E V R ++ + A +G+ +E++++ ++RD+++ A EA E+GLID +L E
Sbjct: 173 ITAREIVKLRVELYEILAHHSGKTVEEIEKDSDRDKWMRAEEAKEYGLIDEVLRRE 228
>gi|297250503|ref|ZP_06864443.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
polysaccharea ATCC 43768]
gi|296838809|gb|EFH22747.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
polysaccharea ATCC 43768]
Length = 209
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 12 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 71
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 72 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 131
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 132 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 191
Query: 258 MEFGLIDGILET 269
E+GLID +LE
Sbjct: 192 KEYGLIDQVLEN 203
>gi|434402516|ref|YP_007145401.1| protease subunit of ATP-dependent protease [Cylindrospermum
stagnale PCC 7417]
gi|428256771|gb|AFZ22721.1| protease subunit of ATP-dependent protease [Cylindrospermum
stagnale PCC 7417]
Length = 197
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 122/189 (64%), Gaps = 3/189 (1%)
Query: 83 PLMPAVMTPGGPLDLSSV---LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
P +P M G D S+ L+R RIIF+G+ I+ +A + I+ L+ L + D DI +
Sbjct: 6 PKVPYRMPGGQYTDWISIYDRLYRERIIFLGRDIDDEIANQIIAVLLYLDSDDPGKDIFL 65
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGG + S LAIYD M IK V T+C G+AAS + +LA G KG R A+P++RIM+
Sbjct: 66 YINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIMI 125
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ + E + RH+++++YA TGQ I K+++ +RD F+SA EA E
Sbjct: 126 HQPSGGTRGQASDIEIEAREILRIRHQLNQIYADNTGQIITKIEKDMDRDFFMSAQEAKE 185
Query: 260 FGLIDGILE 268
+GLID ++E
Sbjct: 186 YGLIDRVIE 194
>gi|226706473|sp|B8CRF7.1|CLPP_SHEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|212557511|gb|ACJ29965.1| Peptidase S14, ClpP [Shewanella piezotolerans WP3]
Length = 203
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESPDKDIYLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G AAS A +LAGG +G R+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + ++K++ M A TGQPIE +++ T+RD F+SA EA E+GL+D +L
Sbjct: 148 HAQEILGIKNKLNTMLAEHTGQPIEVIERDTDRDNFMSADEAAEYGLVDSVL 199
>gi|113475006|ref|YP_721067.1| ATP-dependent Clp protease proteolytic subunit [Trichodesmium
erythraeum IMS101]
gi|110166054|gb|ABG50594.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
Length = 196
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 118/174 (67%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ + L + RIIF+GQ + +A R ++ ++ L + D + I +Y+N PGGS+ + LAI
Sbjct: 21 IDIYTRLGQERIIFLGQEVTDGLANRIVAYMLYLDSDDPNKPIYLYINSPGGSVTAGLAI 80
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IK V T+C G+AAS + +LA G KG R A+PN+RIM++QP G+ G D++
Sbjct: 81 YDTMQYIKADVITICLGLAASMGSFLLAAGTKGKRLALPNSRIMIHQPMGGTRGQATDIE 140
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ NE + R +++ M A TGQ +EK+++ T+RD ++SA EA E+GLID ++E
Sbjct: 141 IEANEILRVRSELNNMLAERTGQSLEKIEKDTDRDYYMSAEEAKEYGLIDQVIE 194
>gi|295705906|ref|YP_003598981.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
megaterium DSM 319]
gi|294803565|gb|ADF40631.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium DSM 319]
Length = 193
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN +A ++QL+ LA D DI +Y+N PGGS + AIY
Sbjct: 19 DIYSRLLKDRIILIGDEINDHIANSVVAQLLFLAADDPKKDISLYINSPGGSTSAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G+AAS A++L G KG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQYIEPDVQTICTGMAASFGALLLLAGAKGKRYALPNSEVMIHQPLGGARGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + I+ + + TGQP+EKV TERD F+SA EA +G+IDGIL
Sbjct: 139 SARRILKLKQHINEIISTRTGQPVEKVANDTERDYFMSAEEAKTYGIIDGIL 190
>gi|193214418|ref|YP_001995617.1| endopeptidase Clp [Chloroherpeton thalassium ATCC 35110]
gi|193087895|gb|ACF13170.1| Endopeptidase Clp [Chloroherpeton thalassium ATCC 35110]
Length = 226
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 119/192 (61%), Gaps = 4/192 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
N L+P V+ G D+ S L R RIIF+G PI+ A ++QL+ L + D + D
Sbjct: 26 NNMLVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDDHSASLIMAQLIYLESEDPERD 85
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I MY+N PGGS+ + L +YD M +I+P V TVC G+AAS A +LA G G R ++P++R
Sbjct: 86 IFMYINSPGGSVSAGLGLYDTMQYIRPDVSTVCVGMAASMGAFLLASGTAGKRASLPHSR 145
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
IM++QP G+ G D+ Q E R ++ ++A T Q + KV++ +ERDR+++A E
Sbjct: 146 IMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELFAQHTKQDVVKVREDSERDRWMNAQE 205
Query: 257 AMEFGLIDGILE 268
A E+G+ID I +
Sbjct: 206 AKEYGIIDEIFD 217
>gi|59801023|ref|YP_207735.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae FA 1090]
gi|240013921|ref|ZP_04720834.1| putative endopeptidase [Neisseria gonorrhoeae DGI18]
gi|240016363|ref|ZP_04722903.1| putative endopeptidase [Neisseria gonorrhoeae FA6140]
gi|240121490|ref|ZP_04734452.1| putative endopeptidase [Neisseria gonorrhoeae PID24-1]
gi|254493943|ref|ZP_05107114.1| endopeptidase [Neisseria gonorrhoeae 1291]
gi|268595002|ref|ZP_06129169.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae 35/02]
gi|268596618|ref|ZP_06130785.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae FA19]
gi|268599230|ref|ZP_06133397.1| endopeptidase [Neisseria gonorrhoeae MS11]
gi|268601577|ref|ZP_06135744.1| endopeptidase [Neisseria gonorrhoeae PID18]
gi|268603916|ref|ZP_06138083.1| endopeptidase [Neisseria gonorrhoeae PID1]
gi|268682379|ref|ZP_06149241.1| endopeptidase [Neisseria gonorrhoeae PID332]
gi|268684537|ref|ZP_06151399.1| endopeptidase [Neisseria gonorrhoeae SK-92-679]
gi|268686847|ref|ZP_06153709.1| endopeptidase [Neisseria gonorrhoeae SK-93-1035]
gi|291043574|ref|ZP_06569290.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae DGI2]
gi|293398887|ref|ZP_06643052.1| Clp protease [Neisseria gonorrhoeae F62]
gi|67460148|sp|Q5F914.1|CLPP_NEIG1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|59717918|gb|AAW89323.1| putative endopeptidase [Neisseria gonorrhoeae FA 1090]
gi|226512983|gb|EEH62328.1| endopeptidase [Neisseria gonorrhoeae 1291]
gi|268548391|gb|EEZ43809.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae 35/02]
gi|268550406|gb|EEZ45425.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae FA19]
gi|268583361|gb|EEZ48037.1| endopeptidase [Neisseria gonorrhoeae MS11]
gi|268585708|gb|EEZ50384.1| endopeptidase [Neisseria gonorrhoeae PID18]
gi|268588047|gb|EEZ52723.1| endopeptidase [Neisseria gonorrhoeae PID1]
gi|268622663|gb|EEZ55063.1| endopeptidase [Neisseria gonorrhoeae PID332]
gi|268624821|gb|EEZ57221.1| endopeptidase [Neisseria gonorrhoeae SK-92-679]
gi|268627131|gb|EEZ59531.1| endopeptidase [Neisseria gonorrhoeae SK-93-1035]
gi|291012037|gb|EFE04026.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
gonorrhoeae DGI2]
gi|291610301|gb|EFF39411.1| Clp protease [Neisseria gonorrhoeae F62]
Length = 204
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 7 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 67 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186
Query: 258 MEFGLIDGILET 269
E+GLID +LE
Sbjct: 187 KEYGLIDQVLEN 198
>gi|420256023|ref|ZP_14758888.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. BT03]
gi|398043984|gb|EJL36841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. BT03]
Length = 217
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 109/174 (62%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R RI+F+ P+N A ++QL+ L + + D DI Y+N PGGS+Y LAI+
Sbjct: 31 DIYSRLLRERIVFLVGPVNDQSASLIVAQLLFLESENPDKDISFYINSPGGSVYDGLAIF 90
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS +LA G G R+A+PNARIM++QP G G DV+
Sbjct: 91 DTMQFIKPDVSTLCTGFAASMGTFLLAAGAPGKRFALPNARIMIHQPSGGGQGTASDVEI 150
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q E + R +++ + A TGQ I +++ T+RD F+SA A +GL+D +L T
Sbjct: 151 QAKEVLYLRERLNTVLAERTGQSIAQIENDTDRDNFMSADAARAYGLVDDVLTT 204
>gi|443479146|ref|ZP_21068788.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
biceps PCC 7429]
gi|443015411|gb|ELS30378.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
biceps PCC 7429]
Length = 198
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 119/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RI+F+GQ ++ ++ ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIFSRLLRERIVFLGQQVDDSISNIIVAQLLFLEADDPEKDIFL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M I+P V T+C G+AAS A +L GG KG R ++P+ RIM+
Sbjct: 61 YINSPGGSVTAGMAIYDTMQHIRPDVSTICVGLAASMGAFLLTGGAKGKRLSLPHTRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A TGQPI+++ + T+RD F+S EA
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKSRLNELMAFHTGQPIDRIAEDTDRDFFMSPYEAKN 180
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 181 YGLIDEVV 188
>gi|166031009|ref|ZP_02233838.1| hypothetical protein DORFOR_00690 [Dorea formicigenerans ATCC
27755]
gi|346308246|ref|ZP_08850367.1| ATP-dependent Clp protease proteolytic subunit [Dorea
formicigenerans 4_6_53AFAA]
gi|166029276|gb|EDR48033.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Dorea
formicigenerans ATCC 27755]
gi|345903543|gb|EGX73306.1| ATP-dependent Clp protease proteolytic subunit [Dorea
formicigenerans 4_6_53AFAA]
Length = 193
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF G+ + A AI+QL+ L D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFFGEEVTDASASVAIAQLLFLEAEDPEKDIHLYINSPGGSVSAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK + T+C G+AAS + +LAGG KG R A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDIETICIGMAASMGSFLLAGGTKGKRLALPNSEIMIHQPSGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R +++R+ A TGQP+E + + T+RD F+SA EA FGLID ++
Sbjct: 139 AAEHILKTRERLNRILAENTGQPLEVISRETDRDNFMSAEEAKAFGLIDEVI 190
>gi|421544605|ref|ZP_15990681.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM140]
gi|421546720|ref|ZP_15992765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM183]
gi|421548972|ref|ZP_15994996.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM2781]
gi|421552923|ref|ZP_15998895.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM576]
gi|421561382|ref|ZP_16007230.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM2657]
gi|402322965|gb|EJU58415.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM183]
gi|402323796|gb|EJU59238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM140]
gi|402325651|gb|EJU61060.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM2781]
gi|402330102|gb|EJU65451.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM576]
gi|402338845|gb|EJU74075.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM2657]
Length = 204
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 7 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 67 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186
Query: 258 MEFGLIDGILET 269
E+GLID +LE
Sbjct: 187 KEYGLIDQVLEN 198
>gi|421563513|ref|ZP_16009332.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM2795]
gi|421907047|ref|ZP_16336935.1| peptidase S14, ClpP [Neisseria meningitidis alpha704]
gi|393292011|emb|CCI72904.1| peptidase S14, ClpP [Neisseria meningitidis alpha704]
gi|402341209|gb|EJU76396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis NM2795]
Length = 204
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 7 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 67 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186
Query: 258 MEFGLIDGILET 269
E+GLID +LE
Sbjct: 187 KEYGLIDQVLEN 198
>gi|333372559|ref|ZP_08464484.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437]
gi|332972924|gb|EGK10866.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437]
Length = 206
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 116/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G IN VA ++Q++ L T D + DI +Y+N PGGSI + AIY
Sbjct: 31 DIYSRLLKDRIIFLGSEINDAVANTIVAQMLFLQTEDPNKDIQLYINSPGGSISAGFAIY 90
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +K + T+C G+AAS A +L+ G KG R A+PN+ +M++QP G+ G D++
Sbjct: 91 DTMQHVKCDIQTICIGMAASMGAFLLSSGTKGKRLALPNSEVMIHQPLGGAQGQASDIEI 150
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ R +++++ + TGQP++K+QQ T+RD F+SA +A ++GLID I+E +
Sbjct: 151 SAKRILRMRDRLNQLLSDQTGQPLKKIQQDTDRDHFMSAEDAKKYGLIDKIIEHQ 205
>gi|389578265|ref|ZP_10168292.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacter
postgatei 2ac9]
gi|389399900|gb|EIM62122.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacter
postgatei 2ac9]
Length = 208
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 118/189 (62%), Gaps = 4/189 (2%)
Query: 83 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
PL+P V+ D+ S L ++RIIF+G I+ VA ++Q++ L + D D DI
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAIDDEVANLIVAQMLFLESEDPDKDIN 61
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
Y+N PGG + + +AIYD + +IKP V TVC G AAS A++L G G R+A+PNARIM
Sbjct: 62 FYINSPGGVVTAGMAIYDTIQYIKPDVATVCIGQAASMGALLLTAGTAGKRFALPNARIM 121
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP G+ G D+K Q E + + ++ + + TGQ IE+V TERD F+S +A+
Sbjct: 122 IHQPMGGAQGQATDIKIQATEILRMKDVLNEILSKHTGQNIERVAADTERDFFMSGQQAL 181
Query: 259 EFGLIDGIL 267
E+G++D ++
Sbjct: 182 EYGIVDRVV 190
>gi|343504824|ref|ZP_08742498.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
ichthyoenteri ATCC 700023]
gi|343510911|ref|ZP_08748102.1| ATP-dependent Clp protease proteolytic subunit [Vibrio scophthalmi
LMG 19158]
gi|343517340|ref|ZP_08754346.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. N418]
gi|342793664|gb|EGU29454.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. N418]
gi|342799857|gb|EGU35407.1| ATP-dependent Clp protease proteolytic subunit [Vibrio scophthalmi
LMG 19158]
gi|342810440|gb|EGU45523.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
ichthyoenteri ATCC 700023]
Length = 204
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + +AIY
Sbjct: 29 DIYSRLLKERIIFLTGQVEDNMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMAIY 88
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G A S A +LAGG KG R+A+PN+R+M++QP G G D++
Sbjct: 89 DTMQFIKPNVSTLCTGQACSMGAFLLAGGAKGKRFALPNSRVMIHQPLGGFQGQASDIQI 148
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++ + A TGQP++ +++ T+RD F+SAA+A E+G+ID +L
Sbjct: 149 HAQEILSIKEKLNNLLAEHTGQPMDIIERDTDRDNFMSAAQAAEYGIIDQVL 200
>gi|91228617|ref|ZP_01262535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus 12G01]
gi|254229904|ref|ZP_04923307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
Ex25]
gi|262394815|ref|YP_003286669.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
gi|269965580|ref|ZP_06179694.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus 40B]
gi|451970181|ref|ZP_21923408.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus E0666]
gi|91187849|gb|EAS74163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus 12G01]
gi|151937540|gb|EDN56395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
Ex25]
gi|262338409|gb|ACY52204.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
gi|269829805|gb|EEZ84040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus 40B]
gi|451933695|gb|EMD81362.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus E0666]
Length = 208
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++++ A TGQP+E +++ T+RD F+S+ +A+E+G++D +L
Sbjct: 152 HAQEILTIKQKLNKLLAEHTGQPLEVIERDTDRDNFMSSEQAVEYGIVDAVL 203
>gi|390559019|ref|ZP_10243393.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Nitrolancetus hollandicus Lb]
gi|390174409|emb|CCF82685.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Nitrolancetus hollandicus Lb]
Length = 205
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R+RIIF+G P++ +A ++Q++ L + + DI +Y+N PGG +Y+ LAIY
Sbjct: 26 DIYSRLLRDRIIFLGTPVDDQIANVIVAQMLFLEHENPEQDIKLYINSPGGLVYAGLAIY 85
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M I+P V T C G+ AS A++LAGG KG R+A+P++RI+++Q SG G V D++
Sbjct: 86 DTMQMIRPDVATYCVGLGASMGAVLLAGGAKGKRFALPHSRILIHQGSSGFRGSVPDIEI 145
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
Q E + ++ + A TGQ E++++ TERD F+SA EA ++G++D +LE +
Sbjct: 146 QARETINLTTQLTELMAYHTGQSFERLKRDTERDYFMSAEEARDYGIVDFVLEPQ 200
>gi|313673004|ref|YP_004051115.1| ATP-dependent clp protease proteolytic subunit clpp
[Calditerrivibrio nitroreducens DSM 19672]
gi|312939760|gb|ADR18952.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Calditerrivibrio nitroreducens DSM 19672]
Length = 195
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA ++Q++ L D DI +Y+N PGG I S LAI+
Sbjct: 20 DIYSRLLKDRIIFLGTAIDDTVANSIVAQMLFLEAEDPKKDIYLYINSPGGVITSGLAIF 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G AAS A++LA G KG R+A+PN RIM++QP G G +D++
Sbjct: 80 DTMNYIKPDVSTICIGQAASMGAVLLACGAKGKRFALPNTRIMIHQPLGGFQGQAKDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + KI+ + A T +PIE++ +RD F+SA EA +GLID ++E
Sbjct: 140 QAKEILRLKSKINEILAERTSKPIEQIDADCDRDFFMSAEEAKAYGLIDEVIE 192
>gi|427728056|ref|YP_007074293.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc sp.
PCC 7524]
gi|427363975|gb|AFY46696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc sp.
PCC 7524]
Length = 203
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 115/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L R RIIF+GQ ++S +A ++QL+ L D + DI +Y+N PGGS+ + + I
Sbjct: 17 FDIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGI 76
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM++QP G+ G D++
Sbjct: 77 FDTMKQIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIE 136
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E + + +++ A TGQPIE++ + TERD F+S EA E+GLID +++
Sbjct: 137 IQAREILYHKKRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKEYGLIDQVID 190
>gi|290474663|ref|YP_003467543.1| clpA-clpP ATP-dependent serine protease proteolytic subunit
[Xenorhabdus bovienii SS-2004]
gi|289173976|emb|CBJ80763.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Xenorhabdus bovienii SS-2004]
Length = 207
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 124/200 (62%), Gaps = 8/200 (4%)
Query: 76 SGKND----NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVT 127
SGK D N L+P V+ T G D+ S L ++RIIF+ P+ +A ++Q++
Sbjct: 4 SGKQDKYAPNMSLVPMVVEQTARGERAFDIYSRLLKDRIIFLTGPVEDHMANLIVAQMLF 63
Query: 128 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKG 187
L + + DI +Y+N PGG I + ++IYD M +IKP V T+C G A S A +L G KG
Sbjct: 64 LEAENPEKDINLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKG 123
Query: 188 MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTE 247
R+ +PN+R+M++QP G G D++ E + + +++ + A TG+P+EK+ + TE
Sbjct: 124 KRFCLPNSRVMIHQPLGGFQGQATDIEIHAQEILKVKARMNELMAKHTGKPLEKIVEDTE 183
Query: 248 RDRFLSAAEAMEFGLIDGIL 267
RDRFLSAAE++E+GL+D I
Sbjct: 184 RDRFLSAAESVEYGLVDSIF 203
>gi|239815493|ref|YP_002944403.1| ATP-dependent Clp protease proteolytic subunit [Variovorax
paradoxus S110]
gi|259491242|sp|C5CJT4.1|CLPP_VARPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|239802070|gb|ACS19137.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Variovorax
paradoxus S110]
Length = 202
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L + RIIF+ +N A ++QL+ L + + D DI
Sbjct: 11 MIPMVIEQSGRGERSYDIYSRLLKERIIFLVGEVNDQTANLVVAQLLFLESENPDKDISF 70
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M +IKP V T+C G AAS A +LA GEKG R+++PN++IM+
Sbjct: 71 YINSPGGSVSAGMAIYDTMQFIKPDVSTMCIGFAASMGAFLLAAGEKGKRFSLPNSKIMI 130
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+Q G+ G D++ + + ++ +++R+ A TGQP+EKV+ TERD FL+A EA +
Sbjct: 131 HQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKSDTERDYFLTADEAKD 190
Query: 260 FGLIDGIL 267
+GL+D ++
Sbjct: 191 YGLVDQVI 198
>gi|384186850|ref|YP_005572746.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410675156|ref|YP_006927527.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus
thuringiensis Bt407]
gi|423384335|ref|ZP_17361591.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
BAG1X1-2]
gi|423529293|ref|ZP_17505738.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
HuB1-1]
gi|452199211|ref|YP_007479292.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|17981474|gb|AAL51031.1|AF454758_1 ClpP2 [Bacillus thuringiensis]
gi|326940559|gb|AEA16455.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar chinensis CT-43]
gi|401640236|gb|EJS57968.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
BAG1X1-2]
gi|402448722|gb|EJV80561.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
HuB1-1]
gi|409174285|gb|AFV18590.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus
thuringiensis Bt407]
gi|452104604|gb|AGG01544.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 193
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +H I++M A TGQPIE+V TERD F++A EA E+G++D ++
Sbjct: 139 TAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKEYGIVDDVV 190
>gi|444375828|ref|ZP_21175080.1| ATP-dependent Clp protease proteolytic subunit [Enterovibrio sp.
AK16]
gi|443680056|gb|ELT86704.1| ATP-dependent Clp protease proteolytic subunit [Enterovibrio sp.
AK16]
Length = 207
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 122/198 (61%), Gaps = 8/198 (4%)
Query: 78 KNDNPPLMPAVM------TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLA 129
KN P +M A++ T G D+ S L + R+IF+ + +A ++QL+ L
Sbjct: 6 KNGMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLE 65
Query: 130 TIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR 189
+ + D DI +Y+N PGGS+ + ++IYD M +IKP V TVC G A S A +LAGG KG R
Sbjct: 66 SENPDKDIFLYINSPGGSVTAGMSIYDTMQYIKPDVSTVCMGQACSMGAFLLAGGAKGKR 125
Query: 190 YAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249
Y +PN+R+M++QP G G D++ E + + K++ + A TGQP+E +++ T+RD
Sbjct: 126 YCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNTLLAEHTGQPLEVIERDTDRD 185
Query: 250 RFLSAAEAMEFGLIDGIL 267
F++A +A ++GL+D +L
Sbjct: 186 NFMAAQDAADYGLVDAVL 203
>gi|160947717|ref|ZP_02094884.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270]
gi|158446851|gb|EDP23846.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Parvimonas micra ATCC 33270]
Length = 192
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 114/174 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ +N +A ++QL+ L + D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLSGEVNDQMADLIVAQLLFLESEDPKKDIQIYINSPGGSVSAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G AAS A +L G KG R+A+PNA IM++QP G+ G ED+K
Sbjct: 79 DTMQYIKPDVSTICIGRAASMGAFLLTSGAKGKRFALPNADIMIHQPLGGAQGQAEDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
Q + + R ++ + A TGQ ++K+++ T+RD ++SA EA E+G+ID ++E
Sbjct: 139 QAQKILQVRATLNEILAKRTGQSLKKIEKDTDRDFYMSAYEAKEYGIIDEVIEN 192
>gi|218768333|ref|YP_002342845.1| ATP-dependent Clp protease proteolytic subunit [Neisseria
meningitidis Z2491]
gi|385328579|ref|YP_005882882.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
meningitidis alpha710]
gi|385338164|ref|YP_005892037.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
[Neisseria meningitidis WUE 2594]
gi|421540568|ref|ZP_15986713.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 93004]
gi|421550808|ref|ZP_15996809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 69166]
gi|433471641|ref|ZP_20429027.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 68094]
gi|433475153|ref|ZP_20432494.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 88050]
gi|433477758|ref|ZP_20435078.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 70012]
gi|433479822|ref|ZP_20437112.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 63041]
gi|433513635|ref|ZP_20470425.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 63049]
gi|433515916|ref|ZP_20472684.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2004090]
gi|433517708|ref|ZP_20474454.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 96023]
gi|433520090|ref|ZP_20476810.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 65014]
gi|433522025|ref|ZP_20478716.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 61103]
gi|433524250|ref|ZP_20480911.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 97020]
gi|433526432|ref|ZP_20483062.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 69096]
gi|433528383|ref|ZP_20484992.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM3652]
gi|433530584|ref|ZP_20487173.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM3642]
gi|433532853|ref|ZP_20489416.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2007056]
gi|433534667|ref|ZP_20491207.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2001212]
gi|433539093|ref|ZP_20495569.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 70030]
gi|433541168|ref|ZP_20497620.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 63006]
gi|18203136|sp|Q9JU33.1|CLPP_NEIMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|121052341|emb|CAM08672.1| endopeptidase [Neisseria meningitidis Z2491]
gi|308389431|gb|ADO31751.1| ATP-dependent Clp protease, proteolytic subunit [Neisseria
meningitidis alpha710]
gi|319410578|emb|CBY90947.1| ATP-dependent Clp protease proteolytic subunit (endopeptidase Clp)
[Neisseria meningitidis WUE 2594]
gi|402318722|gb|EJU54238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 93004]
gi|402329345|gb|EJU64706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
meningitidis 69166]
gi|432208493|gb|ELK64471.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 68094]
gi|432210971|gb|ELK66926.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 88050]
gi|432215423|gb|ELK71312.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 70012]
gi|432216161|gb|ELK72043.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 63041]
gi|432247167|gb|ELL02606.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 63049]
gi|432252842|gb|ELL08192.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2004090]
gi|432253444|gb|ELL08788.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 96023]
gi|432254812|gb|ELL10146.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 65014]
gi|432259494|gb|ELL14765.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 97020]
gi|432259842|gb|ELL15112.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 61103]
gi|432261196|gb|ELL16453.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 69096]
gi|432265184|gb|ELL20380.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM3652]
gi|432266676|gb|ELL21858.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2007056]
gi|432267091|gb|ELL22272.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis NM3642]
gi|432271409|gb|ELL26534.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 2001212]
gi|432273455|gb|ELL28553.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 70030]
gi|432277181|gb|ELL32230.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria meningitidis 63006]
Length = 204
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 6/192 (3%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI
Sbjct: 7 LVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFF 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+RIM+
Sbjct: 67 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMI 126
Query: 200 NQP--QSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
+QP G GG D++ E + + K++R+ A G+ + +++ T+RD F+SA EA
Sbjct: 127 HQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCGRDLADLERDTDRDNFMSAEEA 186
Query: 258 MEFGLIDGILET 269
E+GLID +LE
Sbjct: 187 KEYGLIDQVLEN 198
>gi|228939909|ref|ZP_04102486.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228972800|ref|ZP_04133399.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228979383|ref|ZP_04139719.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis Bt407]
gi|228780387|gb|EEM28618.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis Bt407]
gi|228787015|gb|EEM34995.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228819840|gb|EEM65888.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar berliner ATCC 10792]
Length = 198
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 24 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 84 DTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +H I++M A TGQPIE+V TERD F++A EA E+G++D ++
Sbjct: 144 TAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKEYGIVDDVV 195
>gi|296273946|ref|YP_003656577.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arcobacter
nitrofigilis DSM 7299]
gi|296098120|gb|ADG94070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arcobacter
nitrofigilis DSM 7299]
Length = 194
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 114/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN VA ++QL+ L D D DI +Y+N PGG I S ++IY
Sbjct: 19 DIYSRLLKDRIIMLSGEINDPVASTIVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G AAS A +L+ G KG RY++PN+R+M++QP G+ G D++
Sbjct: 79 DTMNYIKPDVCTICIGQAASMGAFLLSSGVKGKRYSLPNSRVMIHQPSGGAQGQSTDIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + +++M A TGQPI+ +++ T+RD F+SA EA ++GLID ++
Sbjct: 139 QAKEIQRMKDTLNKMIAEQTGQPIKVIEKDTDRDNFMSAEEACKYGLIDEVI 190
>gi|428305261|ref|YP_007142086.1| ATP-dependent Clp protease proteolytic subunit ClpP [Crinalium
epipsammum PCC 9333]
gi|428246796|gb|AFZ12576.1| ATP-dependent Clp protease proteolytic subunit ClpP [Crinalium
epipsammum PCC 9333]
Length = 198
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 121/174 (69%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
+D+ + L+R RIIF+G+ ++ +A + I+ ++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 21 IDIYNRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGSVTAGMAI 80
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
+D M IK V T+C G+AAS + +LA G KG R A+P++RIM++QP G+ G D++
Sbjct: 81 FDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGARGQATDIE 140
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ E + R +++++YA TG+P+EK+++ +RD F+SA EAME+GLID ++E
Sbjct: 141 IEAREIIRIRRQLNQIYANNTGKPLEKIEKDMDRDFFMSAQEAMEYGLIDRVIE 194
>gi|51892052|ref|YP_074743.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
thermophilum IAM 14863]
gi|67460469|sp|Q67QZ4.1|CLPP2_SYMTH RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|51855741|dbj|BAD39899.1| ATP-dependent Clp protease proteolytic subunit [Symbiobacterium
thermophilum IAM 14863]
Length = 200
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA +QL+ L + D D +I MY+N GG + LAIY
Sbjct: 20 DIYSRLLKDRIIFLGTSIDDQVANAVTAQLLFLESDDPDKEINMYINSSGGITSAGLAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP--QSGSGGHVEDV 213
D M IKPKV T G+AAS AA++LAGG G RYA+P+ARI+++QP + G GG V D+
Sbjct: 80 DTMQHIKPKVNTYAIGMAASMAAVLLAGG-TGTRYALPHARILIHQPWVKGGIGGQVTDI 138
Query: 214 KRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ E + ++ K+ + A TGQP+EKV++ +ERDR++SA EA +GL+D +++
Sbjct: 139 EITAKELLHTKEKLAEIIAKHTGQPLEKVKEDSERDRWMSAEEAKAYGLVDVVVQ 193
>gi|149923964|ref|ZP_01912350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Plesiocystis
pacifica SIR-1]
gi|149815196|gb|EDM74745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Plesiocystis
pacifica SIR-1]
Length = 217
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PIN VA I+QL+ L + D D DI +Y+N PGG + + L IY
Sbjct: 28 DIYSRLLKDRIVFLGDPINDRVASIIIAQLLFLESEDPDKDIRLYINSPGGVVTAGLGIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +++ V T C G AAS A +LAGG KG R+A+PNARIM++QP G+ G D++
Sbjct: 88 DTMQYVRCDVATYCLGQAASMGAFLLAGGAKGKRFALPNARIMIHQPHGGASGQATDIEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + K++ + A +G+ ++++ T+RD F+ A EA ++GLID +L
Sbjct: 148 QAREILRLKAKLNEIMARHSGRTVDEILADTDRDNFMGADEAKKYGLIDEVL 199
>gi|315037919|ref|YP_004031487.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
amylovorus GRL 1112]
gi|325956392|ref|YP_004291804.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
acidophilus 30SC]
gi|385817273|ref|YP_005853663.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
amylovorus GRL1118]
gi|312276052|gb|ADQ58692.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
amylovorus GRL 1112]
gi|325332957|gb|ADZ06865.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
acidophilus 30SC]
gi|327183211|gb|AEA31658.1| ATP-dependent Clp protease proteolytic subunit [Lactobacillus
amylovorus GRL1118]
Length = 194
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN +A I+QL+ L D DI +Y+N PGG I S LAI
Sbjct: 18 DIYSRLLKDRIIMLSGEINDQMANSIIAQLLFLDAQDNTKDISLYINSPGGVITSGLAIM 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+ G+AAS A+I+L G KG R+A+PN+ ++++QP G+ G D++
Sbjct: 78 DTMNFIKSDVSTIAIGMAASMASILLTSGTKGKRFALPNSTVLIHQPLGGAQGQQTDIQI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
NE + SR KI+ + TGQP++K+Q+ TERD +L+A EA E+GLID I+
Sbjct: 138 AANEILKSRKKINEILHETTGQPLDKIQKDTERDNYLTAEEAKEYGLIDEIM 189
>gi|310641963|ref|YP_003946721.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
polymyxa SC2]
gi|386040947|ref|YP_005959901.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa M1]
gi|309246913|gb|ADO56480.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa SC2]
gi|343096985|emb|CCC85194.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa M1]
Length = 194
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G I+ +A I+QL+ LA D + DI MY+N PGGS + AIY
Sbjct: 20 DIYSRLLKDRIVFVGATIDDQLANSIIAQLLFLAAEDPEKDIYMYINSPGGSTSAGFAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G AAS AI+L G KG R A+PN+ IM++QP G+ G D+
Sbjct: 80 DTMQYIKPEVHTICTGFAASFGAILLLAGAKGKRSALPNSEIMIHQPHGGAQGQASDIAI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K R+ A TGQ EKV++ +RD ++SA EA+E+G+ID ++
Sbjct: 140 SAKRILWTREKATRITAERTGQSFEKVEKDMDRDFYMSAQEALEYGVIDQVI 191
>gi|28897691|ref|NP_797296.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|260898290|ref|ZP_05906786.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus Peru-466]
gi|308094762|ref|ZP_05891792.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AN-5034]
gi|31340006|sp|Q87R80.1|CLPP_VIBPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|28805904|dbj|BAC59180.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|308088425|gb|EFO38120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus Peru-466]
gi|308093191|gb|EFO42886.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AN-5034]
Length = 200
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 24 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + + K++ + A TGQP+E +++ T+RD F+SA +A+E+G++D +L
Sbjct: 144 HAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAVEYGIVDAVL 195
>gi|162606094|ref|XP_001713562.1| ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
gi|13794482|gb|AAK39857.1|AF165818_65 ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
Length = 233
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 134/219 (61%), Gaps = 12/219 (5%)
Query: 62 EKDFCSTEHSYKIISGKNDNPPLMP------AVMTPGGP----LDLSSVLFRNRIIFIGQ 111
+K+F +H+ + S N +MP A PG P +D+ + L+R RIIF+GQ
Sbjct: 12 QKNFYKKKHN--VTSNNLINIKMMPIGVPKVAYRVPGSPSADWVDIYNRLYRERIIFLGQ 69
Query: 112 PINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFG 171
I+ +A + I+ ++ L + D I MY+N PGGS+ S LA+YD M IK +V T+ G
Sbjct: 70 EIDDEIANQIIAVMLYLDSEDNSKPIYMYINSPGGSVISGLAMYDTMRHIKSEVITINVG 129
Query: 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMY 231
+AAS ++ ILA GEKG R A+P++RIM++QP G+ G D++ + + + R + Y
Sbjct: 130 LAASMSSFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIEVEAQQILKIRKSLTEDY 189
Query: 232 AAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
A +G+ EKV Q +RD F+S+ EA+++GLID ++E++
Sbjct: 190 AEMSGRSYEKVLQDMDRDNFMSSYEALDYGLIDKVIESK 228
>gi|229046487|ref|ZP_04192142.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH676]
gi|228724849|gb|EEL76151.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH676]
Length = 198
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 24 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 83
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 84 DTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 143
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +H I++M A TGQPIE+V TERD F++A EA E+G++D ++
Sbjct: 144 TAKRILKLKHDINKMIAEKTGQPIERVAHDTERDYFMTAEEAKEYGIVDDVV 195
>gi|78779134|ref|YP_397246.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9312]
gi|115311341|sp|Q31BD5.1|CLPP1_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|78712633|gb|ABB49810.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9312]
Length = 195
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 121/191 (63%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D D DI M
Sbjct: 1 MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYM 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q +E + + +++ + TG+ E +++ T+RD ++S +EA+E
Sbjct: 121 HQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYETIKEDTDRDFYMSPSEAVE 180
Query: 260 FGLIDGILETE 270
+GLID +L+ +
Sbjct: 181 YGLIDLVLDKK 191
>gi|424865494|ref|ZP_18289359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86B]
gi|400758762|gb|EJP72964.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86B]
Length = 204
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 126/195 (64%), Gaps = 4/195 (2%)
Query: 78 KNDNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 133
+N L+P V+ TP G D+ S L + R+IF+ PI+ ++ ++QL+ L + +
Sbjct: 2 ENIQSALIPMVIEQTPRGERSFDIYSRLLKERVIFLTGPIDDHISNLVVAQLLFLESENP 61
Query: 134 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193
+ DI +Y+N PGGSI + LAIYD M +I V T+C G AAS A++LAGG+KG R+A+P
Sbjct: 62 EKDISIYINSPGGSISAGLAIYDTMQFISSSVSTMCIGQAASMGALLLAGGDKGKRFALP 121
Query: 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253
N+R+M++QP G G D + E + + ++ + A TGQ ++K+++ T+RD FL+
Sbjct: 122 NSRVMIHQPLGGFQGQASDFEIHAKEILYMKKIVNEILAKHTGQTVKKIEKDTDRDNFLN 181
Query: 254 AAEAMEFGLIDGILE 268
A EA+++GL+D I++
Sbjct: 182 AEEAVKYGLVDKIID 196
>gi|253579815|ref|ZP_04857083.1| clp protease [Ruminococcus sp. 5_1_39B_FAA]
gi|251848814|gb|EES76776.1| clp protease [Ruminococcus sp. 5_1_39BFAA]
Length = 193
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G+ +N + A +SQL+ L D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSAGLIVSQLLFLEAEDPGKDIQLYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G+AAS A +LAGG KG R+A+P++ IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTICLGMAASMGAFLLAGGAKGKRFALPHSTIMIHQPSGGAQGQATEIQI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ ++ ++ + AA TGQPIE V++ T+RD +++A EA +GLIDG++
Sbjct: 139 VADHIAQTKRTLNELLAANTGQPIEVVERDTDRDNYMTAEEAKAYGLIDGVV 190
>gi|384247043|gb|EIE20531.1| hypothetical protein COCSUDRAFT_25295 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D +L R RI+F+G +N A ISQL+ L + D DI +++N PGGS+ + + IY
Sbjct: 11 DPFGLLMRQRIVFLGGEVNDFAADAIISQLLLLDSQDATKDIKLFINSPGGSVTAGMGIY 70
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M + + T CFG+AAS A +L G KG RY+MPNARIM++QP G+ G D++
Sbjct: 71 DAMQLCRADIQTYCFGLAASMGAFLLGAGAKGKRYSMPNARIMIHQPLGGASGQAVDIEI 130
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + ++R+ + TGQPI+K+ + T+RDR++S EA E+GLID ++
Sbjct: 131 QAKEIMYHKANLNRIMSECTGQPIDKIDEDTDRDRYMSPLEAKEYGLIDHVI 182
>gi|227824397|ref|ZP_03989229.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
gi|352683492|ref|YP_004895475.1| ATP-dependent Clp protease [Acidaminococcus intestini RyC-MR95]
gi|226904896|gb|EEH90814.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
gi|350278145|gb|AEQ21335.1| ATP-dependent Clp protease [Acidaminococcus intestini RyC-MR95]
Length = 199
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+ I +A ++QL+ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 22 DIYSRLLKDRIIFVTGEIEDHMANLIVAQLLFLESEDPDKDIHLYINSPGGSVSAGLAIY 81
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+P V T+C G+AAS A+I+LA G KG R+A+P++R+M++QP G+ G D++
Sbjct: 82 DTMQYIRPDVSTICVGMAASMASILLAAGAKGKRFALPHSRVMIHQPLGGAQGQATDIEI 141
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R +++++ AA TG+ E ++ TERD +L+A EA+ +GLID ++
Sbjct: 142 HAREILRVREEMNQILAAHTGKDPETIKLDTERDHYLTADEALSYGLIDQVV 193
>gi|225446742|ref|XP_002282652.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic [Vitis vinifera]
Length = 291
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 118/185 (63%)
Query: 86 PAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG 145
P + G D +L + RI+F+G ++ VA ISQL+ L D DI +++N PG
Sbjct: 68 PGMGARGAEADAMGLLLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPG 127
Query: 146 GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 205
GS+ + +AIYD + ++ V TV G++AS A+IIL GG KG R+AMPN RIM++QP G
Sbjct: 128 GSLSATMAIYDIVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGG 187
Query: 206 SGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDG 265
+ G DV+ Q E + ++ + ++ A F+G+ E+V++ +RDR++S EA+E+G+ID
Sbjct: 188 ASGQAIDVEIQAQEIMHNKSNVTKIIAGFSGRSFEQVEKDIDRDRYMSPIEAVEYGIIDA 247
Query: 266 ILETE 270
+++ +
Sbjct: 248 VIDRD 252
>gi|374711460|ref|ZP_09715894.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sporolactobacillus inulinus CASD]
Length = 195
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 115/173 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++R+IF+G IN VA ++QL+ LA+ D + DI +Y+N PGGS+ + AI
Sbjct: 21 DIYSRLLKDRVIFLGSEINDEVANSIVAQLLFLASEDSEKDISIYINSPGGSVSAGFAIL 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP + T+C G+AAS A+IIL G KG R ++PN +M++QP G+ G D++
Sbjct: 81 DTMNFIKPDIQTICVGMAASMASIILTSGAKGKRLSLPNGEVMIHQPLGGAQGQASDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
+ ++ K++ + A TGQ E+V + T+RD FL+A +A E+GL+D I+E
Sbjct: 141 SAKHILKTKKKLNTIIAETTGQTYEQVVKDTDRDNFLTAEQAKEYGLVDKIIE 193
>gi|452964828|gb|EME69861.1| protease subunit of ATP-dependent Clp protease [Magnetospirillum
sp. SO-1]
Length = 213
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 112/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + VA +QL+ L + + DI Y+N PGG + S LAIY
Sbjct: 30 DIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAFYINSPGGVVTSGLAIY 89
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +++P V TVC G AAS ++++ GEKG R+++PN+RIM++QP G+ G D++
Sbjct: 90 DTMQYVRPAVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIMVHQPSGGAQGQATDIEI 149
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++ +Y TGQP+E +++ ERD+F++A EA EFGLID ++
Sbjct: 150 QAREILALRARLNNIYVEHTGQPLEVIEKVMERDKFMTAEEAKEFGLIDEVV 201
>gi|423593290|ref|ZP_17569321.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD048]
gi|401226956|gb|EJR33486.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD048]
Length = 193
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 111/175 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDTEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ + TGQP+EKV TERD F++A EA E+G++D ++E +
Sbjct: 139 TAKRILKLKHDINKIISDRTGQPVEKVAHDTERDYFMTAVEAKEYGIVDAVIEKK 193
>gi|336113414|ref|YP_004568181.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
coagulans 2-6]
gi|347750878|ref|YP_004858443.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
coagulans 36D1]
gi|335366844|gb|AEH52795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
coagulans 2-6]
gi|347583396|gb|AEO99662.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
coagulans 36D1]
Length = 196
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ V+ +SQL+ L + + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVSNSIVSQLLFLEAENPEKDIYLYINSPGGSVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M IKP V T+C G+AAS +++L G KG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQIIKPDVQTICVGMAASMGSVLLTAGTKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +R K++++ + TGQPIE +++ T+RD F+SA +A E+GLID I+
Sbjct: 139 AAKHILYTRAKLNKILSDHTGQPIEVIERDTDRDNFMSAEKAKEYGLIDHIM 190
>gi|254197976|ref|ZP_04904398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei S13]
gi|169654717|gb|EDS87410.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei S13]
Length = 217
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G +G RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGARGKRYALPNARVMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + R +++ + A TGQ +E++ + T+RD F+S+ +A
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKA 205
Query: 260 FGLIDGI 266
+GLID +
Sbjct: 206 YGLIDHV 212
>gi|357406376|ref|YP_004918300.1| ATP-dependent Clp protease proteolytic subunit [Methylomicrobium
alcaliphilum 20Z]
gi|351719041|emb|CCE24715.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Methylomicrobium alcaliphilum 20Z]
Length = 215
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 114/173 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++I
Sbjct: 34 FDIYSRLLKERVIFLVGQVEDYMANLVVAQLLFLESENPDKDIHLYINSPGGSVTAGMSI 93
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +IKP V T+C G AAS A++L GG KG R+ +P++R+M++QP G G D+
Sbjct: 94 YDTMQFIKPDVSTMCIGQAASMGALLLTGGAKGKRFCLPHSRMMIHQPLGGFQGQASDID 153
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + R K++++ A TGQPIEK++ T+RD FLSA +A+E+GLID +L
Sbjct: 154 IHAREILSIREKLNKVLALHTGQPIEKIRLDTDRDNFLSAQDAVEYGLIDKVL 206
>gi|385153245|gb|AFI43874.1| clp protease proteolytic subunit (chloroplast) [Hemichloris
antarctica]
gi|385153249|gb|AFI43877.1| clp protease proteolytic subunit (chloroplast) [Hemichloris
antarctica]
gi|385153253|gb|AFI43880.1| clp protease proteolytic subunit (chloroplast) [Hemichloris
antarctica]
Length = 203
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 124/188 (65%), Gaps = 5/188 (2%)
Query: 83 PLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 138
P +P M PG P +DL + L+R+R++F+ Q ++ +A + I ++ L +E +
Sbjct: 6 PKVPFRM-PGEPAAQWVDLYNRLYRDRVLFLCQELDDELANQLIGIMLYLNAEEESKGLF 64
Query: 139 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 198
+Y+N PGGS+ +A+YD M +++ V T+C G AAS A+ +LAGG++G R A+P+ARIM
Sbjct: 65 LYINSPGGSVTCGIAVYDAMHYVEADVTTICVGTAASMASFVLAGGDRGRRIALPHARIM 124
Query: 199 LNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258
++QP+ GS G DV + +E + RH++ R+YA TGQP+ ++ + +RD+F+SA E
Sbjct: 125 IHQPEGGSQGQASDVVSESSEVLRIRHQVGRIYAERTGQPLSRISRDMDRDQFMSAREGK 184
Query: 259 EFGLIDGI 266
E+GL+D +
Sbjct: 185 EYGLVDQV 192
>gi|239907453|ref|YP_002954194.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
magneticus RS-1]
gi|259585949|sp|C4XH03.1|CLPP_DESMR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|239797319|dbj|BAH76308.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
magneticus RS-1]
Length = 202
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 110/172 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R+RII +G ++ VA +QL+ L + D + +I MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLRDRIILLGSAVDDYVANLICAQLLFLESEDPEKEIFMYINSPGGVVSAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++ P V T+C G AAS A++L G GMRYA+P++RIM++QP G G D++
Sbjct: 79 DTMQYVMPPVSTLCLGQAASMGALLLCAGATGMRYALPHSRIMIHQPSGGYQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E +R ++ + A TGQ +E++Q TERD F+SA EA+ +GLID +L
Sbjct: 139 HAKETRRTRETLNEIMAKHTGQSMERIQVDTERDNFMSAEEAVAYGLIDKVL 190
>gi|383482277|ref|YP_005391191.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
montanensis str. OSU 85-930]
gi|378934631|gb|AFC73132.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
montanensis str. OSU 85-930]
Length = 201
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 111/174 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAANPKKDIYMYINSPGGVVTAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + + ++ +Y+ TGQ ++ +++ ERD F+S EA +FGL+D I+ +
Sbjct: 139 HAQETLKIKRLLNELYSKHTGQELKHIEKSMERDNFMSPEEAKKFGLVDNIISS 192
>gi|257138854|ref|ZP_05587116.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis E264]
gi|424903788|ref|ZP_18327301.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis MSMB43]
gi|390931661|gb|EIP89062.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis MSMB43]
Length = 217
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 145
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G D++ Q E + + +++ + A TGQ +E++ + T+RD F+S+ +A
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKA 205
Query: 260 FGLIDGI 266
+GLID +
Sbjct: 206 YGLIDHV 212
>gi|423487918|ref|ZP_17464600.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
BtB2-4]
gi|423493640|ref|ZP_17470284.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
CER057]
gi|423499568|ref|ZP_17476185.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
CER074]
gi|423517516|ref|ZP_17493997.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
HuA2-4]
gi|423599898|ref|ZP_17575898.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD078]
gi|423662358|ref|ZP_17637527.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VDM022]
gi|401153311|gb|EJQ60738.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
CER057]
gi|401156826|gb|EJQ64228.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
CER074]
gi|401163788|gb|EJQ71133.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
HuA2-4]
gi|401234585|gb|EJR41063.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD078]
gi|401297977|gb|EJS03582.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VDM022]
gi|402435983|gb|EJV68016.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
BtB2-4]
Length = 193
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 111/175 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ + TGQP+EKV TERD F++A EA E+G++D ++E +
Sbjct: 139 TAKRILKLKHDINKIISNRTGQPVEKVAHDTERDYFMTAVEAKEYGIVDAVIEKK 193
>gi|34558484|ref|NP_908299.1| ATP-dependent Clp protease proteolytic subunit [Wolinella
succinogenes DSM 1740]
gi|60389700|sp|Q7M7M3.1|CLPP_WOLSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|34481778|emb|CAE11199.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT [Wolinella
succinogenes]
Length = 195
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 117/176 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII + IN VA +SQ++ L D + DI +Y+N PGG I S ++IY
Sbjct: 19 DIYSRLLKDRIIMLSGEINDGVASSIVSQMLFLEAEDPEKDIYLYINSPGGVITSGMSIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+++KP + T+C G AAS A +L+ G KG R+++PN+RIM++QP G+ G D++
Sbjct: 79 DTMNYVKPDICTICIGQAASMGAFLLSCGTKGKRFSLPNSRIMIHQPLGGAQGQATDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
Q E + + ++ + A+ TGQP+EK+ + T+RD F+SA E+ E+GLID +LE +
Sbjct: 139 QAKEILRLKSILNGILASNTGQPLEKIAKDTDRDFFMSAQESKEYGLIDNVLEKSF 194
>gi|210621780|ref|ZP_03292809.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275]
gi|210154544|gb|EEA85550.1| hypothetical protein CLOHIR_00754 [Clostridium hiranonis DSM 13275]
Length = 195
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 120/188 (63%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RIIF+ +N A ++QL+ L D D DI +
Sbjct: 3 LVPYVVEQTGRGERSYDIFSRLLKDRIIFLCDEVNDDTAGLIVAQLLFLEAEDPDKDIHL 62
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGSI + +AIYD M++IKP V T+C G+AAS A +L+ G KG RYA+PN+ IM+
Sbjct: 63 YINSPGGSITAGMAIYDTMNYIKPDVSTICIGMAASMGAFLLSSGAKGKRYALPNSEIMI 122
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +++ + + + K++++ + TGQP+EK+ TERD F+ A EA+
Sbjct: 123 HQPLGGAQGQATEIEIRAKRIIRMKEKLNQILSENTGQPLEKIMADTERDNFMEADEALA 182
Query: 260 FGLIDGIL 267
+GLID ++
Sbjct: 183 YGLIDEVI 190
>gi|423510774|ref|ZP_17487305.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
HuA2-1]
gi|402453727|gb|EJV85527.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
HuA2-1]
Length = 193
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 111/175 (63%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
+ +H I+++ + TGQP+EKV TERD F++A EA E+G++D ++E +
Sbjct: 139 TAKRILKLKHDINKIISDRTGQPVEKVAHDTERDYFMTAVEAKEYGIVDAVIEKK 193
>gi|297841293|ref|XP_002888528.1| hypothetical protein ARALYDRAFT_894344 [Arabidopsis lyrata subsp.
lyrata]
gi|297334369|gb|EFH64787.1| hypothetical protein ARALYDRAFT_894344 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 114/174 (65%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
LD +++L R RI+F+G ++ M A ISQL+ L D + DI +++N PGGSI + + I
Sbjct: 83 LDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGI 142
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M K V TVC G+AAS A +LA G KG RY MPN+++M++QP +GG ++
Sbjct: 143 YDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMS 202
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
++ E + + K++++++ TG+P +++ T+RD FL+ EA E+GLID +++
Sbjct: 203 IRIREMMYHKIKLNKIFSRITGKPESEIEGDTDRDNFLNPWEAKEYGLIDAVID 256
>gi|407789641|ref|ZP_11136741.1| ATP-dependent Clp protease proteolytic subunit [Gallaecimonas
xiamenensis 3-C-1]
gi|407206301|gb|EKE76259.1| ATP-dependent Clp protease proteolytic subunit [Gallaecimonas
xiamenensis 3-C-1]
Length = 203
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 124/199 (62%), Gaps = 4/199 (2%)
Query: 73 KIISGKNDNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTL 128
K+I+ + L+P V+ T G D+ S L + R+IF+ + +A ++QL+ L
Sbjct: 2 KLIAENDPMNALVPMVIEQTARGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQLLFL 61
Query: 129 ATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGM 188
+ + DI +Y+N PGGS+ + +AIYD M +IK V T+C G AAS A +LAGG KG
Sbjct: 62 EAENPEKDIHLYINSPGGSVTAGMAIYDTMQFIKADVSTLCIGQAASMGAFLLAGGAKGK 121
Query: 189 RYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 248
R+ +PNAR+M++QP G G D++ E + + +++R+ A TGQ +E + Q T+R
Sbjct: 122 RHCLPNARVMIHQPLGGFQGQASDIEIHAREILFIKDRLNRLLADHTGQSLETIAQDTDR 181
Query: 249 DRFLSAAEAMEFGLIDGIL 267
DRF++A +AME+GL+D +L
Sbjct: 182 DRFMTAEQAMEYGLVDSVL 200
>gi|423611176|ref|ZP_17587037.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD107]
gi|401248629|gb|EJR54951.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus cereus
VD107]
Length = 193
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 111/172 (64%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIIMIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M+ IKP V T+C G+AAS A++L G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMNLIKPDVQTLCMGLAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ +H I+++ A TGQP+EKV TERD F++A EA E+G++D ++
Sbjct: 139 TAKRILKLKHDINKIIAERTGQPVEKVAHDTERDYFMTAEEAKEYGILDDVV 190
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,073,906,677
Number of Sequences: 23463169
Number of extensions: 167257676
Number of successful extensions: 398283
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5872
Number of HSP's successfully gapped in prelim test: 1015
Number of HSP's that attempted gapping in prelim test: 389721
Number of HSP's gapped (non-prelim): 7063
length of query: 271
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 131
effective length of database: 9,074,351,707
effective search space: 1188740073617
effective search space used: 1188740073617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)