BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024202
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAA2|CLPP6_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic
OS=Arabidopsis thaliana GN=CLPP6 PE=1 SV=1
Length = 271
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/276 (72%), Positives = 225/276 (81%), Gaps = 10/276 (3%)
Query: 1 MVASAISA--SLSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDS-SSGLSIRNRG 55
M AIS LSFS+ + N SF S+ RN R IVSAL SPYGDS +GLS G
Sbjct: 1 MAGLAISPPLGLSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSG 60
Query: 56 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 115
P+KID K + +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+
Sbjct: 61 SPIKIDNK-----APRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINA 115
Query: 116 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 175
VAQR ISQLVTLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVAAS
Sbjct: 116 QVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAAS 175
Query: 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT 235
Q A++LAGGEKGMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R KIDRMYAAFT
Sbjct: 176 QGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFT 235
Query: 236 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETEY 271
GQP+EKVQQYTERDRFLSA+EA+EFGLIDG+LETEY
Sbjct: 236 GQPLEKVQQYTERDRFLSASEALEFGLIDGLLETEY 271
>sp|Q59993|CLPP2_SYNY3 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP2 PE=3 SV=1
Length = 226
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 128/195 (65%), Gaps = 4/195 (2%)
Query: 77 GKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 132
G N+ ++P V+ G D+ S L R RIIF+G P++ VA ++QL+ L D
Sbjct: 16 GGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAED 75
Query: 133 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 192
+ DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L+GG KG R A+
Sbjct: 76 PEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMAL 135
Query: 193 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252
P++RIM++QP G+ G +++ Q E + + +++ M TGQP+EK+Q+ TERD F+
Sbjct: 136 PSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFM 195
Query: 253 SAAEAMEFGLIDGIL 267
SA EA E+GLID ++
Sbjct: 196 SAEEAKEYGLIDQVI 210
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 121/174 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + + ++R+ + TGQPIEK+++ T+RD F+SA EA E+G++D ++ T
Sbjct: 148 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVST 201
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 121/174 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + + ++R+ + TGQPIEK+++ T+RD F+SA EA E+G++D ++ T
Sbjct: 148 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVST 201
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 121/174 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
E + + ++R+ + TGQPIEK+++ T+RD F+SA EA E+G++D ++ T
Sbjct: 148 ITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVST 201
>sp|Q5KVD9|CLPP_GEOKA ATP-dependent Clp protease proteolytic subunit OS=Geobacillus
kaustophilus (strain HTA426) GN=clpP PE=3 SV=1
Length = 196
Score = 174 bits (440), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA +SQL+ LA D D DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQPIE +++ T+RD F++A +AME+G+ID +L
Sbjct: 139 AAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAMEYGIIDRVL 190
>sp|B4UAX9|CLPP_ANASK ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
sp. (strain K) GN=clpP PE=3 SV=1
Length = 203
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q EA+ + K++ + A T QPIE++++ TERD F+SA EA E+GLID +
Sbjct: 141 QAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKEYGLIDDVF 192
>sp|Q2IEW1|CLPP_ANADE ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=clpP PE=3 SV=1
Length = 203
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q EA+ + K++ + A T QPIE++++ TERD F+SA EA E+GLID +
Sbjct: 141 QAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKEYGLIDDVF 192
>sp|B8J5G7|CLPP_ANAD2 ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=clpP PE=3
SV=1
Length = 203
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q EA+ + K++ + A T QPIE++++ TERD F+SA EA E+GLID +
Sbjct: 141 QAKEALRLKAKLNEIMARHTRQPIERIERDTERDYFMSAGEAKEYGLIDDVF 192
>sp|Q317Y6|CLPP4_PROM9 ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus
marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1
Length = 219
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D + DI +Y
Sbjct: 31 VPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIY 90
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 91 INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 150
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G +++ Q E + + ++ + A TGQP+EK+ + TERD FLS +EA+E+
Sbjct: 151 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEY 210
Query: 261 GLIDGILE 268
GLID +++
Sbjct: 211 GLIDKVIK 218
>sp|A7HFV9|CLPP_ANADF ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
sp. (strain Fw109-5) GN=clpP PE=3 SV=1
Length = 204
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G PI+ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSGLAIY 80
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++QP G G D+
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQATDIDI 140
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + K++ + A T QP+E++++ T+RD F+ A EA E+GLID ++
Sbjct: 141 QAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFMGAGEAKEYGLIDEVI 192
>sp|Q8CTE0|CLPP_STAES ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1
Length = 194
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 118/175 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ + TGQ IEK+QQ T+RD FL+AAEA E+GLID ++E E
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEVMEPE 193
>sp|Q5HQW0|CLPP_STAEQ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3
SV=1
Length = 194
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 118/175 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++R+ + TGQ IEK+QQ T+RD FL+AAEA E+GLID ++E E
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEVMEPE 193
>sp|Q8KC73|CLPP_CHLTE ATP-dependent Clp protease proteolytic subunit OS=Chlorobium
tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=clpP
PE=3 SV=1
Length = 225
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 130/212 (61%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG +N L+P V+ G D+ S L R RIIF+G PI+
Sbjct: 5 NFGFDHHAKKLYSGAIENSINSQLVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA I+QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS
Sbjct: 65 VAGLIIAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G G R ++P++RIM++QP G+ G D+ Q E RH ++ + A TG
Sbjct: 125 GAFLLASGTSGKRASLPHSRIMIHQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q + ++++ +ERDR++SA EA E+GLID I E
Sbjct: 185 QEVSRIREDSERDRWMSAVEAKEYGLIDQIFE 216
>sp|P80244|CLPP_BACSU ATP-dependent Clp protease proteolytic subunit OS=Bacillus subtilis
(strain 168) GN=clpP PE=1 SV=3
Length = 197
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID IL
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>sp|Q5P161|CLPP_AROAE ATP-dependent Clp protease proteolytic subunit OS=Aromatoleum
aromaticum (strain EbN1) GN=clpP PE=3 SV=1
Length = 212
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 124/188 (65%), Gaps = 4/188 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L + R+IF+ P+N + A ++QL+ L + + D D+
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLIVAQLLFLESENPDKDVYF 78
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ S +AIYD M +IKP V T+C G AAS + +LA GEKG R+ +PN+R+M+
Sbjct: 79 YINSPGGSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMI 138
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G G D++ E + R K++ M A TGQPIE++++ T+RDRF+SAA+A+E
Sbjct: 139 HQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAADAVE 198
Query: 260 FGLIDGIL 267
+G++D +L
Sbjct: 199 YGIVDKVL 206
>sp|Q5N665|CLPP1_SYNP6 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP1 PE=3 SV=1
Length = 197
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 126/189 (66%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ S VA R ++QL+ L D + DI +
Sbjct: 1 MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M+ I+P V TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +D++ Q NE + + ++ + A TGQP+ +++ T+RD F+SA+EA+E
Sbjct: 121 HQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDRVID 189
>sp|P54415|CLPP1_SYNE7 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1
Length = 197
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 126/189 (66%), Gaps = 4/189 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
++P V+ G D+ S L R RIIF+G+P+ S VA R ++QL+ L D + DI +
Sbjct: 1 MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+Y L I+D M+ I+P V TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G +D++ Q NE + + ++ + A TGQP+ +++ T+RD F+SA+EA+E
Sbjct: 121 HQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVE 180
Query: 260 FGLIDGILE 268
+GLID +++
Sbjct: 181 YGLIDRVID 189
>sp|Q7VXI7|CLPP_BORPE ATP-dependent Clp protease proteolytic subunit OS=Bordetella
pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
GN=clpP PE=3 SV=1
Length = 217
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQP+E++ TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211
>sp|Q7W8X2|CLPP_BORPA ATP-dependent Clp protease proteolytic subunit OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=clpP PE=3 SV=1
Length = 217
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQP+E++ TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211
>sp|Q7WK83|CLPP_BORBR ATP-dependent Clp protease proteolytic subunit OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=clpP PE=3 SV=1
Length = 217
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQP+E++ TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211
>sp|Q13UT1|CLPP1_BURXL ATP-dependent Clp protease proteolytic subunit 1 OS=Burkholderia
xenovorans (strain LB400) GN=clpP1 PE=3 SV=1
Length = 215
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 8/203 (3%)
Query: 71 SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 126
SY I+G L+P V+ G D+ S L R RI+F+ P+N A ++QL+
Sbjct: 4 SYPTITGLG----LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLL 59
Query: 127 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 186
L + + D DI Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++
Sbjct: 60 FLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQR 119
Query: 187 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 246
G RYA+PNARIM++QP GS G DV+ Q E + R +++ M A TG+ IE++ + T
Sbjct: 120 GKRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRERLNAMMAERTGRSIEEIARDT 179
Query: 247 ERDRFLSAAEAMEFGLIDGILET 269
+RD F+SA A +GL+D +LET
Sbjct: 180 DRDNFMSAHAAKTYGLVDEVLET 202
>sp|A4ISQ2|CLPP_GEOTN ATP-dependent Clp protease proteolytic subunit OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1
Length = 196
Score = 171 bits (432), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ A TGQPIE +++ T+RD F++A +A E+G+ID +L
Sbjct: 139 AAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQEYGIIDRVL 190
>sp|A9IR54|CLPP_BORPD ATP-dependent Clp protease proteolytic subunit OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=clpP
PE=3 SV=1
Length = 217
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + R +++R+ A TGQP+E++ TERD F+SA +A+ +GL+D +L
Sbjct: 160 QAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211
>sp|A8F754|CLPP_THELT ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=clpP PE=3 SV=1
Length = 199
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 130/191 (68%), Gaps = 4/191 (2%)
Query: 84 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139
L+P V+ G D+ S L ++RI+F+G I+ VA ++QL+ L D D DI +
Sbjct: 7 LIPTVIESTGRYERAYDIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQL 66
Query: 140 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 199
Y+N PGGS+ + LAIYD M +IK V T+C G AAS AA++LA G KG R+A+PNARIML
Sbjct: 67 YINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIML 126
Query: 200 NQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259
+QP G+ G V+DV+ E + ++ I+ + + TGQP++++++ T+RD F+SA EA++
Sbjct: 127 HQPLGGAEGPVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEALD 186
Query: 260 FGLIDGILETE 270
+GL+D ++E++
Sbjct: 187 YGLVDKVIESK 197
>sp|A7Z939|CLPP_BACA2 ATP-dependent Clp protease proteolytic subunit OS=Bacillus
amyloliquefaciens (strain FZB42) GN=clpP PE=3 SV=1
Length = 198
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
++ R K++++ A TGQP+E +++ T+RD F SA EA+E+GLID +L
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSADEALEYGLIDKVL 190
>sp|Q3ATL3|CLPP_CHLCH ATP-dependent Clp protease proteolytic subunit OS=Chlorobium
chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1
Length = 225
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 132/212 (62%), Gaps = 7/212 (3%)
Query: 64 DFCSTEHSYKIISG---KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 116
+F H+ K+ SG + + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHAKKLYSGAIEQGISNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGTGIDEH 64
Query: 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P++ TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPEISTVCVGMAASM 124
Query: 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R ++ + A TG
Sbjct: 125 GAFLLASGNKGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTG 184
Query: 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
QP+EKV++ +ERDR+++ EA+E+GLID I E
Sbjct: 185 QPVEKVREDSERDRWMNPQEALEYGLIDAIFE 216
>sp|A6TM61|CLPP_ALKMQ ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus
metalliredigens (strain QYMF) GN=clpP PE=3 SV=1
Length = 194
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 115/172 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+G IN + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIFSRLLKERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +LA G KG R+A+PNA +M++QP G+ G ED++
Sbjct: 79 DTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQAEDIRI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
V R ++++ TGQP+E+VQ+ T+RD F+ A EA E+G+ID ++
Sbjct: 139 HAERIVKLRDTLNKILVERTGQPLERVQKDTDRDFFMEAKEAKEYGIIDEVI 190
>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3
SV=1
Length = 195
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K+D++ A TGQPIEK++ TERD F+ A +A +G+ID +L
Sbjct: 139 HAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190
>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpP PE=3 SV=1
Length = 195
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K+D++ A TGQPIEK++ TERD F+ A +A +G+ID +L
Sbjct: 139 HAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190
>sp|B3E1Z4|CLPP_GEOLS ATP-dependent Clp protease proteolytic subunit OS=Geobacter lovleyi
(strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpP PE=3
SV=1
Length = 197
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RI+F+G IN VA I+QL+ L D D DI +Y+N PGG + + +AI+
Sbjct: 18 DIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIF 77
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IK V T+C G AAS A++L GEKG R+A+P+ARIM++QP GS G D+
Sbjct: 78 DTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIHQPSGGSRGQATDIMI 137
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + +++R+ A +GQP+E+++Q TERD F+SA EA +GLID ++
Sbjct: 138 QAEEILRMKRELNRLLADLSGQPVERLEQDTERDFFMSAEEARNYGLIDAVM 189
>sp|A8MIS8|CLPP_ALKOO ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus
oremlandii (strain OhILAs) GN=clpP PE=3 SV=1
Length = 195
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 115/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + RIIF+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKERIIFLSDEVNDATASLVVAQLLFLESEDPDKDIQLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP V T+C G+AAS A +L G+KG R+A+PNA IM++QP G+ G ED++
Sbjct: 79 DTMNYIKPDVSTICIGMAASMGAFLLTAGQKGKRFALPNAEIMIHQPLGGTRGQAEDIRI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ R ++++ A TGQP+EKVQ+ T+RD F+ A EA +G+ID ++ T
Sbjct: 139 HTERILKMRETLNKIIAERTGQPLEKVQKDTDRDFFMEAEEARAYGIIDEVITT 192
>sp|Q72XW9|CLPP2_BACC1 ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus cereus
(strain ATCC 10987) GN=clpP2 PE=3 SV=1
Length = 193
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDIHLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A +A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKIF 190
>sp|C5D7M9|CLPP_GEOSW ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp.
(strain WCH70) GN=clpP PE=3 SV=1
Length = 196
Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ A TGQP+E +++ T+RD F++A +A E+G+ID +L
Sbjct: 139 AAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKAQEYGIIDRVL 190
>sp|B8FA62|CLPP_DESAA ATP-dependent Clp protease proteolytic subunit OS=Desulfatibacillum
alkenivorans (strain AK-01) GN=clpP PE=3 SV=1
Length = 201
Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G +N +VA I+QL+ L + D + DI Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDINFYINSPGGSVTAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M++IKP++ TVC G AAS A++LA G G RY++PNARI+++QP G G D+
Sbjct: 79 DTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARILIHQPMGGFQGQASDIAI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
Q E + + ++ + A+ TG+P+++VQQ T+RD F+S EA E+GLID ++
Sbjct: 139 QAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEAKEYGLIDHVI 190
>sp|Q0AWF0|CLPP_SYNWW ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas
wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3
SV=1
Length = 200
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIF+G I+ VA I+QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 79
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + +I+P V T+C G+AAS A +LA G+KG RYA+PNA IM++QP G+ G D++
Sbjct: 80 DTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEI 139
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ + ++++ A TGQP+E++Q+ T+RD F++A EA E+G+ID ++
Sbjct: 140 HARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVI 191
>sp|Q8RC25|CLPP_THETN ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=clpP PE=3 SV=2
Length = 195
Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 113/172 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RI+F+G IN A I+Q++ L D D DI +Y+N PGGSI + LAIY
Sbjct: 19 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPGGSITAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQGQATDIKI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQP+EK++ ERD F++A EA +G+ID IL
Sbjct: 139 HAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAEEAKTYGIIDDIL 190
>sp|A1S4X5|CLPP_SHEAM ATP-dependent Clp protease proteolytic subunit OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=clpP PE=3
SV=1
Length = 202
Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A ++QL+ L + + D +I +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESENPDKEIYLYINSPGGSVTAGMAIY 87
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV TVC G A S A +LAGGEKGMR+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
E + +HK+++M + TGQP+E +++ T+RD F+SA +A+E+GLID +L
Sbjct: 148 HAQEILGIKHKLNQMLSHHTGQPMEVIERDTDRDNFMSATQAVEYGLIDSVL 199
>sp|Q3B0U1|CLPP2_SYNS9 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain CC9902) GN=clpP2 PE=3 SV=1
Length = 207
Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 6 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 65
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 66 QIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 125
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP++K+ + T+RD FLS AEA
Sbjct: 126 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEA 185
Query: 258 MEFGLIDGILET 269
+E+GLID ++++
Sbjct: 186 VEYGLIDRVVDS 197
>sp|B2A158|CLPP_NATTJ ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=clpP PE=3 SV=1
Length = 197
Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 120/173 (69%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RIIFIG IN +A I+Q++ L + D D DI +Y+N PGG +++ LAIY
Sbjct: 19 DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +I+ V T+C G+AAS A++LA G +G R+ +PN+RIML+QP G+ G DV+
Sbjct: 79 DTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + ++ +++++ A TGQP+E++ + T+RD F+S+ EA ++G+ID +L+
Sbjct: 139 HAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVIDDVLK 191
>sp|Q5FUR3|CLPP1_GLUOX ATP-dependent Clp protease proteolytic subunit 1 OS=Gluconobacter
oxydans (strain 621H) GN=clpP1 PE=3 SV=1
Length = 215
Score = 167 bits (423), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 116/174 (66%)
Query: 95 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 154
D+ S L + RIIF+ P+ V+ +QL+ L +++ +I Y+N PGG + + LAI
Sbjct: 31 FDIFSRLLQERIIFLTGPVYDQVSSLICAQLLYLESVNPTKEISFYINSPGGVVSAGLAI 90
Query: 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 214
YD M +I+ V TVC G AAS +++LAGGEKG RYA+PNAR+M++QP G+ G D++
Sbjct: 91 YDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGHRYALPNARVMVHQPSGGAQGQASDIE 150
Query: 215 RQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
Q E +I R +++ +Y TGQ +E+++Q ERD +LSA EA EFGLID ++E
Sbjct: 151 IQAREILIIRQRLNEIYREHTGQTLEQIEQKLERDSYLSANEAREFGLIDKVVE 204
>sp|Q4L4J5|CLPP_STAHJ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1
Length = 195
Score = 167 bits (422), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 117/175 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270
N + +R K++++ A TGQ IEK+Q+ T+RD FL+A EA E+GLID +++ E
Sbjct: 139 AANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEAKEYGLIDNVMQPE 193
>sp|Q3ANI8|CLPP1_SYNSC ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain CC9605) GN=clpP1 PE=3 SV=2
Length = 207
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 82 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 137
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 6 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 65
Query: 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 66 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 125
Query: 198 MLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257
M++QP G+ G D++ Q E + + ++ + A TGQP++K+ + T+RD FLS AEA
Sbjct: 126 MIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEA 185
Query: 258 MEFGLIDGILET 269
+E+GLID ++++
Sbjct: 186 VEYGLIDRVVDS 197
>sp|Q47XL8|CLPP_COLP3 ATP-dependent Clp protease proteolytic subunit OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=clpP PE=3
SV=1
Length = 220
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 113/173 (65%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L + R+IF+ + +A I+QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 43 DIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDKDIYLYINSPGGSVTAGMAIY 102
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP + TVC G AAS A +L+GGEKG RY +PNAR+M++QP G G D +
Sbjct: 103 DTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNARVMIHQPLGGFQGQASDFEI 162
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268
E + + K++++ A TGQ ++KV Q T+RD FLSA A+E+GL+D ILE
Sbjct: 163 HAKEILFIKDKLNKLMAEHTGQTLDKVSQDTDRDNFLSAEAAVEYGLVDSILE 215
>sp|Q9K709|CLPP1_BACHD ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=clpP1 PE=3 SV=1
Length = 194
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 116/174 (66%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRGQASDIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269
+ R ++R+ A TGQP+E++ + T+RD F++A +A E+GLID ++ET
Sbjct: 139 HTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKAREYGLIDKVIET 192
>sp|Q7V992|CLPP1_PROMM ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus
marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1
Length = 224
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 124/193 (64%), Gaps = 4/193 (2%)
Query: 81 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 136
+P ++P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + D
Sbjct: 22 SPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKD 81
Query: 137 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 196
I +Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L GG KG R A+PNAR
Sbjct: 82 IQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNAR 141
Query: 197 IMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256
IM++QP G+ G D++ Q E + + ++ + A TGQP+ K+ + T+RD FLS A+
Sbjct: 142 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAK 201
Query: 257 AMEFGLIDGILET 269
A+E+GLID ++++
Sbjct: 202 AVEYGLIDRVVDS 214
>sp|B7GL34|CLPP_ANOFW ATP-dependent Clp protease proteolytic subunit OS=Anoxybacillus
flavithermus (strain DSM 21510 / WK1) GN=clpP PE=3 SV=1
Length = 196
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++R+ + TGQPIE +++ T+RD F++A +A E+GLID +L
Sbjct: 139 AAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAEKAKEYGLIDRVL 190
>sp|A8FHN9|CLPP_BACP2 ATP-dependent Clp protease proteolytic subunit OS=Bacillus pumilus
(strain SAFR-032) GN=clpP PE=3 SV=1
Length = 198
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 117/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQPIE +++ T+RD F +A EA+++GLID +L
Sbjct: 139 AAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEALQYGLIDKVL 190
>sp|Q7UZK7|CLPP3_PROMP ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4)
GN=clpP3 PE=3 SV=1
Length = 215
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 119/190 (62%), Gaps = 4/190 (2%)
Query: 85 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 140
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D DI +Y
Sbjct: 25 VPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPHKDIQIY 84
Query: 141 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 200
+N PGGS+ + LAIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 85 INSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 144
Query: 201 QPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260
QP G+ G +++ Q E + + ++ + A T Q +EK+ + TERD FLS EA+E+
Sbjct: 145 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEY 204
Query: 261 GLIDGILETE 270
GLID +++ +
Sbjct: 205 GLIDKVIKND 214
>sp|Q6HBD8|CLPP2_BACHK ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus
thuringiensis subsp. konkukian (strain 97-27) GN=clpP2
PE=3 SV=1
Length = 193
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 118/172 (68%)
Query: 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 155
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 216 QVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGIL 267
+ R K++++ A TGQP+E +Q+ T+RD F++A +A+E+GLID I
Sbjct: 139 AAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKIF 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,506,591
Number of Sequences: 539616
Number of extensions: 3983468
Number of successful extensions: 10584
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 9585
Number of HSP's gapped (non-prelim): 804
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)