Query 024202
Match_columns 271
No_of_seqs 208 out of 1613
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 4.4E-56 9.6E-61 396.7 19.9 179 92-270 80-258 (275)
2 COG0740 ClpP Protease subunit 100.0 7.9E-55 1.7E-59 380.5 19.8 187 84-270 3-193 (200)
3 PRK14513 ATP-dependent Clp pro 100.0 3.5E-52 7.6E-57 366.3 21.7 177 94-270 17-193 (201)
4 PRK14514 ATP-dependent Clp pro 100.0 4.8E-52 1E-56 369.9 22.1 177 94-270 44-220 (221)
5 PRK12551 ATP-dependent Clp pro 100.0 7.2E-51 1.6E-55 357.0 21.4 177 94-270 15-191 (196)
6 PRK12552 ATP-dependent Clp pro 100.0 4.3E-51 9.4E-56 363.5 20.0 177 94-270 20-215 (222)
7 CHL00028 clpP ATP-dependent Cl 100.0 1E-50 2.3E-55 357.0 21.8 177 94-270 20-197 (200)
8 TIGR00493 clpP ATP-dependent C 100.0 2.2E-47 4.7E-52 333.8 21.5 175 94-268 16-190 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 1.9E-46 4.1E-51 329.4 21.1 178 93-270 12-189 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 4E-46 8.6E-51 327.9 22.0 187 84-270 7-197 (200)
11 PF00574 CLP_protease: Clp pro 100.0 1.1E-45 2.5E-50 318.5 15.1 177 94-270 6-182 (182)
12 PRK12553 ATP-dependent Clp pro 100.0 1.2E-44 2.6E-49 320.1 20.5 177 94-270 25-203 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 4E-44 8.6E-49 307.5 18.4 171 96-266 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 2.4E-43 5.2E-48 300.6 19.9 162 105-266 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 1.5E-33 3.3E-38 238.4 18.4 156 106-266 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 1.9E-31 4.1E-36 229.8 18.9 155 106-269 3-165 (172)
17 cd00394 Clp_protease_like Case 100.0 2.8E-31 6.1E-36 223.8 18.0 159 106-266 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 6.3E-28 1.4E-32 209.7 19.1 161 106-270 3-166 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 6.8E-26 1.5E-30 196.3 18.6 156 106-269 3-171 (178)
20 COG0616 SppA Periplasmic serin 99.9 8.3E-22 1.8E-26 184.6 15.3 161 106-269 63-262 (317)
21 TIGR00706 SppA_dom signal pept 99.9 2.9E-21 6.2E-26 170.4 17.5 159 106-268 4-194 (207)
22 cd07014 S49_SppA Signal peptid 99.9 8.6E-21 1.9E-25 163.1 16.8 144 117-269 23-169 (177)
23 cd07023 S49_Sppa_N_C Signal pe 99.9 9.9E-21 2.2E-25 166.7 17.1 160 106-268 4-199 (208)
24 TIGR00705 SppA_67K signal pept 99.9 1.9E-20 4.2E-25 187.9 17.9 160 106-268 312-510 (584)
25 cd07022 S49_Sppa_36K_type Sign 99.8 4.4E-20 9.6E-25 163.5 17.4 149 116-268 25-205 (214)
26 PRK10949 protease 4; Provision 99.8 1.5E-19 3.3E-24 182.2 16.6 160 106-268 330-528 (618)
27 cd07019 S49_SppA_1 Signal pept 99.8 3.4E-19 7.3E-24 157.7 16.2 161 106-269 4-203 (211)
28 PRK11778 putative inner membra 99.8 5.3E-18 1.1E-22 159.4 16.6 159 106-269 94-286 (330)
29 cd07018 S49_SppA_67K_type Sign 99.8 1E-17 2.2E-22 149.3 15.0 154 111-268 24-212 (222)
30 COG1030 NfeD Membrane-bound se 99.7 1.6E-16 3.5E-21 152.7 15.0 156 106-269 30-188 (436)
31 PF01972 SDH_sah: Serine dehyd 99.6 1.8E-13 4E-18 125.0 17.3 147 109-262 68-241 (285)
32 TIGR00705 SppA_67K signal pept 99.5 1.3E-12 2.9E-17 131.6 15.6 151 115-268 75-268 (584)
33 PF01343 Peptidase_S49: Peptid 99.4 1.3E-12 2.7E-17 110.4 9.8 108 158-268 2-139 (154)
34 PRK10949 protease 4; Provision 99.4 8.7E-12 1.9E-16 126.3 15.4 151 115-268 94-287 (618)
35 cd06558 crotonase-like Crotona 99.1 3.8E-09 8.1E-14 90.9 14.1 139 112-269 22-181 (195)
36 PRK05869 enoyl-CoA hydratase; 98.9 7.6E-08 1.6E-12 85.9 15.8 138 113-269 31-187 (222)
37 PRK06688 enoyl-CoA hydratase; 98.9 6.1E-08 1.3E-12 87.9 14.8 138 113-269 29-184 (259)
38 PRK08258 enoyl-CoA hydratase; 98.9 9.4E-08 2E-12 87.8 15.7 139 113-269 41-202 (277)
39 COG3904 Predicted periplasmic 98.9 3.8E-08 8.3E-13 86.9 12.2 151 107-265 79-236 (245)
40 PRK06495 enoyl-CoA hydratase; 98.8 7.9E-08 1.7E-12 87.4 14.6 141 107-269 17-182 (257)
41 PRK03580 carnitinyl-CoA dehydr 98.8 1.2E-07 2.5E-12 86.4 15.0 138 113-269 26-182 (261)
42 PRK07511 enoyl-CoA hydratase; 98.8 1.3E-07 2.8E-12 86.0 15.2 138 113-269 27-186 (260)
43 PRK06143 enoyl-CoA hydratase; 98.8 1.3E-07 2.8E-12 86.1 14.8 137 113-269 31-187 (256)
44 PRK09674 enoyl-CoA hydratase-i 98.8 1.8E-07 4E-12 84.9 15.2 138 113-269 26-180 (255)
45 PRK06190 enoyl-CoA hydratase; 98.8 2.5E-07 5.4E-12 84.5 15.9 138 113-269 28-182 (258)
46 PRK11423 methylmalonyl-CoA dec 98.8 1.7E-07 3.7E-12 85.5 14.5 137 113-269 28-184 (261)
47 PRK08138 enoyl-CoA hydratase; 98.8 2.8E-07 6E-12 84.0 15.5 138 113-269 32-186 (261)
48 TIGR03210 badI 2-ketocyclohexa 98.8 2.5E-07 5.5E-12 84.1 14.9 138 113-269 26-182 (256)
49 PRK06210 enoyl-CoA hydratase; 98.8 2E-07 4.2E-12 85.3 14.2 138 113-269 30-196 (272)
50 PRK07110 polyketide biosynthes 98.8 3.3E-07 7.1E-12 83.0 15.5 138 113-269 29-182 (249)
51 PF00378 ECH: Enoyl-CoA hydrat 98.8 1.8E-07 3.9E-12 83.9 13.7 137 113-270 22-179 (245)
52 PRK05809 3-hydroxybutyryl-CoA 98.8 2.2E-07 4.8E-12 84.4 14.4 136 113-269 28-185 (260)
53 PRK05981 enoyl-CoA hydratase; 98.7 2.6E-07 5.7E-12 84.2 14.7 138 113-269 28-191 (266)
54 PRK09076 enoyl-CoA hydratase; 98.7 3.7E-07 7.9E-12 83.0 15.4 138 113-269 26-183 (258)
55 PRK06023 enoyl-CoA hydratase; 98.7 3.5E-07 7.6E-12 82.9 15.1 138 113-269 30-185 (251)
56 PRK07658 enoyl-CoA hydratase; 98.7 3.1E-07 6.6E-12 83.3 14.7 138 113-269 25-182 (257)
57 PLN02664 enoyl-CoA hydratase/d 98.7 3.1E-07 6.6E-12 84.4 14.7 138 113-269 32-199 (275)
58 PLN02600 enoyl-CoA hydratase 98.7 4.1E-07 8.9E-12 82.4 15.2 138 113-269 19-176 (251)
59 PRK05980 enoyl-CoA hydratase; 98.7 2.6E-07 5.7E-12 83.9 13.9 138 113-269 27-188 (260)
60 PRK08260 enoyl-CoA hydratase; 98.7 3.1E-07 6.7E-12 85.3 14.6 138 113-269 28-201 (296)
61 PRK07509 enoyl-CoA hydratase; 98.7 3.2E-07 6.9E-12 83.4 14.3 137 113-268 27-189 (262)
62 PLN02888 enoyl-CoA hydratase 98.7 4.7E-07 1E-11 82.8 15.4 138 113-269 34-187 (265)
63 PLN02921 naphthoate synthase 98.7 4.1E-07 9E-12 85.9 15.5 138 113-269 91-249 (327)
64 PRK07938 enoyl-CoA hydratase; 98.7 3.2E-07 6.9E-12 83.2 14.0 135 113-269 25-179 (249)
65 PRK07396 dihydroxynaphthoic ac 98.7 4E-07 8.6E-12 83.6 14.6 138 113-269 37-195 (273)
66 PRK08150 enoyl-CoA hydratase; 98.7 6E-07 1.3E-11 81.6 15.7 136 113-269 26-180 (255)
67 TIGR01929 menB naphthoate synt 98.7 3.3E-07 7.1E-12 83.5 13.9 138 113-269 27-185 (259)
68 PRK07327 enoyl-CoA hydratase; 98.7 4.6E-07 9.9E-12 82.9 14.9 138 113-269 36-194 (268)
69 PRK09245 enoyl-CoA hydratase; 98.7 3.4E-07 7.4E-12 83.4 13.8 138 113-269 27-191 (266)
70 TIGR03189 dienoyl_CoA_hyt cycl 98.7 6E-07 1.3E-11 81.5 15.3 137 113-269 24-176 (251)
71 PRK07854 enoyl-CoA hydratase; 98.7 4.7E-07 1E-11 81.8 14.3 136 113-268 24-173 (243)
72 PRK05864 enoyl-CoA hydratase; 98.7 4.2E-07 9.1E-12 83.5 14.2 139 113-269 34-198 (276)
73 TIGR02280 PaaB1 phenylacetate 98.7 5.8E-07 1.3E-11 81.6 15.0 137 113-269 23-181 (256)
74 PRK06494 enoyl-CoA hydratase; 98.7 7.3E-07 1.6E-11 81.1 15.4 138 113-269 28-182 (259)
75 PRK08139 enoyl-CoA hydratase; 98.7 8.2E-07 1.8E-11 81.2 15.7 137 113-269 35-191 (266)
76 PRK07260 enoyl-CoA hydratase; 98.7 6E-07 1.3E-11 81.4 14.6 136 113-269 26-186 (255)
77 PRK06142 enoyl-CoA hydratase; 98.7 6.5E-07 1.4E-11 82.0 14.8 138 113-269 30-197 (272)
78 PRK07468 enoyl-CoA hydratase; 98.7 5.2E-07 1.1E-11 82.2 13.9 137 113-269 29-187 (262)
79 PRK05862 enoyl-CoA hydratase; 98.7 8.4E-07 1.8E-11 80.5 15.2 138 113-269 28-182 (257)
80 PRK06127 enoyl-CoA hydratase; 98.7 1E-06 2.2E-11 80.7 15.5 138 113-269 35-194 (269)
81 PRK06144 enoyl-CoA hydratase; 98.7 6E-07 1.3E-11 81.9 14.0 138 113-269 32-191 (262)
82 PRK05995 enoyl-CoA hydratase; 98.6 8E-07 1.7E-11 80.8 14.7 137 113-269 28-186 (262)
83 PLN03214 probable enoyl-CoA hy 98.6 4.6E-07 1E-11 83.5 13.0 140 112-269 34-196 (278)
84 PRK08140 enoyl-CoA hydratase; 98.6 1.2E-06 2.5E-11 79.8 15.4 137 113-269 28-187 (262)
85 PRK08290 enoyl-CoA hydratase; 98.6 5.2E-07 1.1E-11 83.6 13.2 136 113-269 28-204 (288)
86 PRK06563 enoyl-CoA hydratase; 98.6 9.8E-07 2.1E-11 80.0 14.7 138 113-269 23-180 (255)
87 PRK07657 enoyl-CoA hydratase; 98.6 1.2E-06 2.5E-11 79.8 15.0 136 113-269 28-185 (260)
88 PRK09120 p-hydroxycinnamoyl Co 98.6 1.2E-06 2.7E-11 80.5 15.0 138 113-269 32-192 (275)
89 PRK06072 enoyl-CoA hydratase; 98.6 1.5E-06 3.2E-11 78.7 15.1 134 113-266 24-173 (248)
90 PRK08321 naphthoate synthase; 98.6 1.7E-06 3.7E-11 80.7 15.7 138 113-269 49-224 (302)
91 PRK06213 enoyl-CoA hydratase; 98.6 1.7E-06 3.8E-11 77.2 15.1 134 113-269 26-180 (229)
92 PRK08788 enoyl-CoA hydratase; 98.6 1.1E-06 2.3E-11 81.7 14.2 139 112-269 39-209 (287)
93 PRK08252 enoyl-CoA hydratase; 98.6 1.9E-06 4E-11 78.2 15.3 138 113-269 27-179 (254)
94 PRK07799 enoyl-CoA hydratase; 98.6 2.1E-06 4.5E-11 78.3 15.3 138 113-269 29-188 (263)
95 PRK05674 gamma-carboxygeranoyl 98.6 1.7E-06 3.6E-11 79.1 14.2 137 113-269 30-188 (265)
96 PRK08259 enoyl-CoA hydratase; 98.5 2E-06 4.4E-11 78.1 14.1 138 113-269 27-181 (254)
97 PRK12478 enoyl-CoA hydratase; 98.5 1.2E-06 2.6E-11 81.6 12.4 134 113-269 29-197 (298)
98 PRK08272 enoyl-CoA hydratase; 98.5 2.2E-06 4.7E-11 79.8 14.1 135 113-269 34-212 (302)
99 PRK07112 polyketide biosynthes 98.5 3.2E-06 6.8E-11 76.9 14.6 135 113-269 28-183 (255)
100 PLN02267 enoyl-CoA hydratase/i 98.5 5E-06 1.1E-10 75.0 15.8 138 113-269 23-184 (239)
101 PRK05870 enoyl-CoA hydratase; 98.5 1.1E-06 2.3E-11 79.6 11.4 133 113-267 27-181 (249)
102 TIGR03200 dearomat_oah 6-oxocy 98.5 3.3E-06 7.1E-11 80.7 15.0 138 113-269 52-212 (360)
103 PRK07659 enoyl-CoA hydratase; 98.5 2.3E-06 5E-11 77.9 13.4 132 113-267 30-184 (260)
104 KOG1680 Enoyl-CoA hydratase [L 98.4 1.9E-06 4.1E-11 79.2 11.3 136 113-270 61-216 (290)
105 PRK07827 enoyl-CoA hydratase; 98.4 6.3E-06 1.4E-10 75.0 13.7 134 113-268 30-187 (260)
106 PRK12319 acetyl-CoA carboxylas 98.4 1.2E-05 2.7E-10 73.7 15.4 136 103-269 69-214 (256)
107 COG1024 CaiD Enoyl-CoA hydrata 98.4 6.4E-06 1.4E-10 74.7 13.3 138 112-269 28-186 (257)
108 PRK05724 acetyl-CoA carboxylas 98.4 9.3E-06 2E-10 76.5 14.3 136 103-269 122-267 (319)
109 TIGR02440 FadJ fatty oxidation 98.4 7.7E-06 1.7E-10 84.5 14.4 138 113-269 26-186 (699)
110 CHL00198 accA acetyl-CoA carbo 98.3 1E-05 2.2E-10 76.3 13.9 135 103-268 125-269 (322)
111 PRK08184 benzoyl-CoA-dihydrodi 98.3 6.1E-06 1.3E-10 83.1 13.0 140 113-269 49-216 (550)
112 PRK11730 fadB multifunctional 98.3 1.1E-05 2.4E-10 83.6 15.1 138 113-269 31-190 (715)
113 TIGR00513 accA acetyl-CoA carb 98.3 1.2E-05 2.6E-10 75.7 13.9 136 103-269 122-267 (316)
114 PRK05617 3-hydroxyisobutyryl-C 98.3 7.5E-06 1.6E-10 77.7 12.3 132 113-269 27-187 (342)
115 PLN03230 acetyl-coenzyme A car 98.3 1.2E-05 2.6E-10 78.0 13.3 128 111-269 200-337 (431)
116 PLN02157 3-hydroxyisobutyryl-C 98.3 1.7E-05 3.6E-10 77.1 14.4 137 113-269 61-220 (401)
117 TIGR02437 FadB fatty oxidation 98.3 1.8E-05 4E-10 81.9 15.5 138 113-269 31-190 (714)
118 PLN02874 3-hydroxyisobutyryl-C 98.3 1.7E-05 3.7E-10 76.4 14.1 143 107-269 24-192 (379)
119 PLN02851 3-hydroxyisobutyryl-C 98.3 2.9E-05 6.4E-10 75.5 15.4 145 105-269 53-225 (407)
120 PLN02988 3-hydroxyisobutyryl-C 98.3 3E-05 6.6E-10 74.8 15.2 137 113-269 33-192 (381)
121 PRK11154 fadJ multifunctional 98.2 2.7E-05 5.8E-10 80.6 15.5 138 113-269 31-191 (708)
122 TIGR03222 benzo_boxC benzoyl-C 98.2 1.7E-05 3.7E-10 79.8 13.1 140 113-269 45-212 (546)
123 TIGR02441 fa_ox_alpha_mit fatt 98.1 4.3E-05 9.4E-10 79.4 14.6 134 113-269 38-198 (737)
124 TIGR03134 malonate_gamma malon 98.1 8.6E-05 1.9E-09 67.5 14.6 130 112-269 44-189 (238)
125 PLN03229 acetyl-coenzyme A car 98.1 3.5E-05 7.6E-10 79.0 13.0 130 108-268 218-357 (762)
126 TIGR03222 benzo_boxC benzoyl-C 97.9 0.00014 3E-09 73.3 13.4 140 113-269 295-465 (546)
127 TIGR01117 mmdA methylmalonyl-C 97.9 8E-05 1.7E-09 74.5 10.8 142 109-270 327-482 (512)
128 PRK08184 benzoyl-CoA-dihydrodi 97.8 0.00025 5.4E-09 71.6 11.9 137 113-269 299-469 (550)
129 PF01039 Carboxyl_trans: Carbo 97.4 0.0004 8.7E-09 69.1 7.7 147 110-270 307-465 (493)
130 PLN02820 3-methylcrotonyl-CoA 97.4 0.0016 3.5E-08 66.0 11.4 92 110-203 379-482 (569)
131 PRK05654 acetyl-CoA carboxylas 97.4 0.0028 6E-08 59.3 12.1 92 107-202 131-233 (292)
132 TIGR00515 accD acetyl-CoA carb 97.3 0.0027 5.9E-08 59.2 11.6 125 108-270 131-266 (285)
133 KOG1681 Enoyl-CoA isomerase [L 97.1 0.00082 1.8E-08 60.8 5.6 103 150-270 114-216 (292)
134 COG0825 AccA Acetyl-CoA carbox 97.1 0.0015 3.3E-08 60.7 7.2 140 94-269 117-266 (317)
135 TIGR03133 malonate_beta malona 96.9 0.008 1.7E-07 55.8 10.1 94 108-203 70-177 (274)
136 PRK07189 malonate decarboxylas 96.7 0.0085 1.8E-07 56.3 9.2 93 108-202 79-185 (301)
137 COG0447 MenB Dihydroxynaphthoi 96.6 0.0063 1.4E-07 54.8 6.7 135 114-269 44-204 (282)
138 KOG1682 Enoyl-CoA isomerase [L 96.2 0.023 4.9E-07 50.9 7.8 98 152-269 115-212 (287)
139 KOG1679 Enoyl-CoA hydratase [L 96.0 0.023 5E-07 51.3 6.9 129 117-268 59-211 (291)
140 PF06833 MdcE: Malonate decarb 95.6 0.15 3.1E-06 46.4 10.6 68 130-201 60-141 (234)
141 COG4799 Acetyl-CoA carboxylase 94.9 0.11 2.5E-06 52.2 8.3 93 109-203 336-440 (526)
142 PLN02820 3-methylcrotonyl-CoA 94.7 0.21 4.7E-06 50.8 10.0 91 108-202 140-244 (569)
143 CHL00174 accD acetyl-CoA carbo 93.8 0.39 8.4E-06 45.2 8.9 92 108-203 144-247 (296)
144 TIGR01117 mmdA methylmalonyl-C 93.0 0.48 1E-05 47.7 8.8 113 87-203 71-194 (512)
145 PF01039 Carboxyl_trans: Carbo 91.8 0.38 8.2E-06 48.1 6.3 91 109-203 69-171 (493)
146 KOG0016 Enoyl-CoA hydratase/is 91.8 1.9 4.1E-05 39.9 10.2 97 154-269 99-195 (266)
147 cd06567 Peptidase_S41 C-termin 89.3 2.4 5.2E-05 37.1 8.6 76 109-186 66-168 (224)
148 cd07560 Peptidase_S41_CPP C-te 89.2 2.9 6.2E-05 37.0 9.0 88 96-186 41-155 (211)
149 COG0777 AccD Acetyl-CoA carbox 88.6 5.3 0.00011 37.4 10.4 118 79-204 103-236 (294)
150 PF08496 Peptidase_S49_N: Pept 87.3 1.1 2.3E-05 38.3 4.8 40 108-149 104-146 (155)
151 TIGR00225 prc C-terminal pepti 85.5 3.5 7.5E-05 38.9 7.7 73 113-186 161-258 (334)
152 PRK11186 carboxy-terminal prot 85.1 4.4 9.4E-05 42.3 8.8 70 115-185 365-460 (667)
153 PLN00049 carboxyl-terminal pro 84.8 5.8 0.00012 38.4 9.0 81 104-185 194-302 (389)
154 cd07561 Peptidase_S41_CPP_like 81.6 7.1 0.00015 35.7 7.8 87 97-185 55-183 (256)
155 COG0793 Prc Periplasmic protea 81.4 7.4 0.00016 38.1 8.3 79 106-185 205-310 (406)
156 PF03572 Peptidase_S41: Peptid 81.1 6.4 0.00014 32.4 6.8 70 116-186 15-114 (169)
157 smart00245 TSPc tail specific 79.5 12 0.00026 32.3 8.3 82 104-186 28-136 (192)
158 cd07562 Peptidase_S41_TRI Tric 77.0 15 0.00033 33.3 8.5 80 102-186 85-187 (266)
159 KOG1684 Enoyl-CoA hydratase [L 76.2 10 0.00022 36.8 7.3 96 105-202 49-180 (401)
160 PLN00125 Succinyl-CoA ligase [ 72.7 13 0.00028 35.0 7.0 64 106-174 180-245 (300)
161 cd07563 Peptidase_S41_IRBP Int 70.7 26 0.00056 31.3 8.3 66 118-186 82-181 (250)
162 COG4799 Acetyl-CoA carboxylase 66.7 14 0.0003 37.6 6.1 90 109-202 103-202 (526)
163 PF13607 Succ_CoA_lig: Succiny 61.6 27 0.0006 29.0 6.1 59 106-172 31-91 (138)
164 PTZ00187 succinyl-CoA syntheta 61.4 26 0.00057 33.3 6.6 83 88-174 174-264 (317)
165 KOG0540 3-Methylcrotonyl-CoA c 60.0 32 0.00069 34.5 7.0 87 110-200 362-461 (536)
166 COG0074 SucD Succinyl-CoA synt 59.9 25 0.00055 33.1 6.1 67 119-197 186-253 (293)
167 TIGR00377 ant_ant_sig anti-ant 47.0 1.2E+02 0.0026 22.7 7.5 34 106-139 15-48 (108)
168 TIGR02886 spore_II_AA anti-sig 46.9 38 0.00082 25.8 4.4 34 106-139 11-44 (106)
169 COG0757 AroQ 3-dehydroquinate 45.1 64 0.0014 27.3 5.6 45 119-168 54-98 (146)
170 TIGR02763 chlamy_scaf chlamydi 43.0 1.1E+02 0.0025 24.5 6.5 54 211-266 31-87 (114)
171 PF00549 Ligase_CoA: CoA-ligas 42.8 66 0.0014 27.3 5.5 57 119-175 59-121 (153)
172 PRK06091 membrane protein FdrA 42.3 63 0.0014 33.2 6.2 53 120-174 239-291 (555)
173 cd07043 STAS_anti-anti-sigma_f 36.3 1.7E+02 0.0036 21.2 7.1 78 106-184 11-90 (99)
174 PF02310 B12-binding: B12 bind 36.2 2E+02 0.0043 22.0 7.7 67 105-180 30-97 (121)
175 PHA00099 minor capsid protein 35.9 1.6E+02 0.0035 24.6 6.6 50 212-263 62-114 (147)
176 PLN02522 ATP citrate (pro-S)-l 35.1 1.1E+02 0.0023 31.9 6.6 64 106-174 197-262 (608)
177 TIGR01019 sucCoAalpha succinyl 34.3 1.4E+02 0.0031 27.9 6.8 81 87-174 147-237 (286)
178 PF00681 Plectin: Plectin repe 33.9 24 0.00052 23.4 1.2 18 248-265 18-35 (45)
179 PF14566 PTPlike_phytase: Inos 32.3 1.7E+02 0.0036 24.3 6.4 52 103-159 90-149 (149)
180 cd07041 STAS_RsbR_RsbS_like Su 32.0 2.2E+02 0.0049 21.5 8.2 79 106-184 13-93 (109)
181 TIGR00282 metallophosphoestera 30.1 1E+02 0.0022 28.6 5.1 65 105-169 2-66 (266)
182 cd02067 B12-binding B12 bindin 29.0 2.7E+02 0.0059 21.5 8.1 81 97-186 18-105 (119)
183 PRK05678 succinyl-CoA syntheta 28.8 1.8E+02 0.004 27.2 6.6 64 106-174 175-239 (291)
184 PF01740 STAS: STAS domain; I 28.5 2.7E+02 0.0058 21.2 8.6 77 105-181 11-97 (117)
185 smart00250 PLEC Plectin repeat 28.4 36 0.00078 21.7 1.3 19 248-266 18-36 (38)
186 PF09675 Chlamy_scaf: Chlamydi 27.7 3.2E+02 0.007 22.2 6.8 59 206-266 23-87 (114)
187 TIGR02364 dha_pts dihydroxyace 27.5 3E+02 0.0065 22.4 6.9 55 104-161 28-85 (125)
188 cd01026 TOPRIM_OLD TOPRIM_OLD: 26.6 1.7E+02 0.0037 22.1 5.1 66 101-173 1-66 (97)
189 COG1366 SpoIIAA Anti-anti-sigm 26.3 1.3E+02 0.0029 23.4 4.5 38 106-145 16-53 (117)
190 TIGR02717 AcCoA-syn-alpha acet 26.2 1.2E+02 0.0025 30.0 5.1 62 106-175 180-243 (447)
191 PRK13015 3-dehydroquinate dehy 26.0 1.2E+02 0.0026 25.8 4.3 45 119-168 55-99 (146)
192 TIGR01579 MiaB-like-C MiaB-lik 26.0 2.7E+02 0.0059 26.8 7.5 70 107-176 2-77 (414)
193 TIGR00237 xseA exodeoxyribonuc 26.0 4.1E+02 0.0088 26.2 8.8 103 87-196 133-249 (432)
194 KOG3093 5-formyltetrahydrofola 24.6 1.1E+02 0.0023 27.2 3.9 44 118-161 31-74 (200)
195 PF01220 DHquinase_II: Dehydro 24.1 1.5E+02 0.0033 25.0 4.6 47 119-170 54-100 (140)
196 COG1512 Beta-propeller domains 23.0 2E+02 0.0044 26.7 5.7 56 102-157 32-89 (271)
197 PTZ00409 Sir2 (Silent Informat 22.7 3.2E+02 0.0068 25.3 6.9 65 99-171 171-235 (271)
198 PF02601 Exonuc_VII_L: Exonucl 22.5 3.7E+02 0.008 24.9 7.5 86 106-196 44-137 (319)
199 PRK05395 3-dehydroquinate dehy 22.4 1.5E+02 0.0032 25.2 4.2 45 119-168 55-99 (146)
200 cd06844 STAS Sulphate Transpor 21.9 1.8E+02 0.0039 21.8 4.4 36 106-141 11-46 (100)
201 KOG0781 Signal recognition par 21.5 5.2E+02 0.011 26.6 8.4 96 138-243 353-455 (587)
202 PRK14637 hypothetical protein; 21.3 2E+02 0.0043 24.3 4.8 62 107-169 41-105 (151)
203 COG0779 Uncharacterized protei 21.2 2.3E+02 0.005 24.1 5.2 57 111-168 47-105 (153)
204 TIGR01088 aroQ 3-dehydroquinat 21.1 1.7E+02 0.0036 24.8 4.3 45 119-168 53-97 (141)
205 PRK14635 hypothetical protein; 20.8 2.1E+02 0.0046 24.3 5.0 55 111-166 48-103 (162)
206 PRK13170 hisH imidazole glycer 20.7 76 0.0017 27.5 2.3 28 144-171 45-79 (196)
207 PRK00286 xseA exodeoxyribonucl 20.4 4.8E+02 0.01 25.4 8.1 85 105-196 164-254 (438)
208 PF09862 DUF2089: Protein of u 20.4 2.4E+02 0.0051 22.9 4.9 53 207-260 49-111 (113)
209 cd00466 DHQase_II Dehydroquina 20.3 2.3E+02 0.0049 23.9 4.9 45 119-168 53-97 (140)
210 cd01455 vWA_F11C1-5a_type Von 20.2 3.7E+02 0.0081 23.7 6.5 58 115-172 91-152 (191)
211 PF01381 HTH_3: Helix-turn-hel 20.0 2.1E+02 0.0046 18.8 4.0 31 229-259 13-43 (55)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-56 Score=396.68 Aligned_cols=179 Identities=47% Similarity=0.834 Sum_probs=175.8
Q ss_pred CCCCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEec
Q 024202 92 GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 92 ~g~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G 171 (271)
.+++||+++||++|||||+++||+++++.+++||++|+.+|+.|+|+||||||||+++++++|||+|++++.||.|+|.|
T Consensus 80 ~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~G 159 (275)
T KOG0840|consen 80 ERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVG 159 (275)
T ss_pred CCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeehh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
+|||+|++|+++|.||+|+++||+++|||||.++..|++.|+.++++|+.++++.+.++|+++||++.|+|.+.++||+|
T Consensus 160 ~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~f 239 (275)
T KOG0840|consen 160 LAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRF 239 (275)
T ss_pred hHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHcCCceeeccCC
Q 024202 252 LSAAEAMEFGLIDGILETE 270 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~~ 270 (271)
|+|+||+||||||+|++..
T Consensus 240 msa~EA~eyGliD~v~~~p 258 (275)
T KOG0840|consen 240 MSAEEAKEYGLIDKVIDHP 258 (275)
T ss_pred CCHHHHHHhcchhhhhcCC
Confidence 9999999999999999864
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=7.9e-55 Score=380.48 Aligned_cols=187 Identities=43% Similarity=0.790 Sum_probs=180.0
Q ss_pred cccEEecCC----CCCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHH
Q 024202 84 LMPAVMTPG----GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 159 (271)
Q Consensus 84 ~~~~~~~~~----g~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~ 159 (271)
+.|.++++. ...|+|++|+++|+|||.|+|++.+++.++.||++|+.+++.++|.||||||||+|++|++|||+|+
T Consensus 3 ~~~~~~e~~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~ 82 (200)
T COG0740 3 LVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQ 82 (200)
T ss_pred CCccccCcccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHH
Confidence 466776552 2689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 024202 160 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPI 239 (271)
Q Consensus 160 ~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~ 239 (271)
.+++||+|+|.|.|||||++|++||++|+|+++|||++|||||+++..|+++|++++++|+.++++.+.++|+++||+++
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~ 162 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTL 162 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCccccHHHHHHcCCceeeccCC
Q 024202 240 EKVQQYTERDRFLSAAEAMEFGLIDGILETE 270 (271)
Q Consensus 240 e~i~~~~~~~~~lsa~EAle~GLID~I~~~~ 270 (271)
++++++++||+||||+||++|||||+|++.+
T Consensus 163 e~i~~d~drd~~msa~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 163 EKIEKDTDRDTWMSAEEAKEYGLIDKVIESR 193 (200)
T ss_pred HHHHHhhcccccCCHHHHHHcCCcceecccc
Confidence 9999999999999999999999999999865
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=3.5e-52 Score=366.31 Aligned_cols=177 Identities=41% Similarity=0.749 Sum_probs=173.4
Q ss_pred CCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEeccc
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
+.|+|++|+++|||||+++|++++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++.||+|+|.|+|
T Consensus 17 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~A 96 (201)
T PRK14513 17 MYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIA 96 (201)
T ss_pred ccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEeee
Confidence 78999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
||+|++|++||++|+|++.|||++|||||+++..|++.|++.++++++++++.+.++|+++||++.++|.+++++|+|||
T Consensus 97 aS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~ms 176 (201)
T PRK14513 97 MSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMS 176 (201)
T ss_pred hhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccCC
Q 024202 254 AAEAMEFGLIDGILETE 270 (271)
Q Consensus 254 a~EAle~GLID~I~~~~ 270 (271)
|+||++|||||+|+++.
T Consensus 177 a~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 177 PEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHHHcCCCcEEeccC
Confidence 99999999999998753
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.8e-52 Score=369.93 Aligned_cols=177 Identities=38% Similarity=0.692 Sum_probs=173.8
Q ss_pred CCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEeccc
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
++|+|++|+++|||||+++||+.+++.++++|++|+.+++.++|.||||||||+|++|++|||+|+.++.||+|+|.|+|
T Consensus 44 ~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G~A 123 (221)
T PRK14514 44 QMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGMA 123 (221)
T ss_pred ccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 79999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
||||++|+++|++|+|++.||+++|||||+++..|++.|++++++++.++++.+.++|+++||++.++|++++++|+|||
T Consensus 124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmt 203 (221)
T PRK14514 124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMT 203 (221)
T ss_pred hhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccCC
Q 024202 254 AAEAMEFGLIDGILETE 270 (271)
Q Consensus 254 a~EAle~GLID~I~~~~ 270 (271)
|+||++|||||+|++.+
T Consensus 204 A~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 204 AQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHcCCccEEeecC
Confidence 99999999999999875
No 5
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=7.2e-51 Score=356.97 Aligned_cols=177 Identities=42% Similarity=0.773 Sum_probs=173.3
Q ss_pred CCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEeccc
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
++|+|++|+++||||++++||+.+++.++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|+|
T Consensus 15 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~A 94 (196)
T PRK12551 15 AFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLA 94 (196)
T ss_pred ccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 68999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
||+|++|+++|++|+|++.||+++|||||+++..|++.|++.++++++++++.+.++|+++||++.++|++++++|+|||
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ms 174 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMS 174 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccCC
Q 024202 254 AAEAMEFGLIDGILETE 270 (271)
Q Consensus 254 a~EAle~GLID~I~~~~ 270 (271)
|+||++|||||+|++++
T Consensus 175 a~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 175 PSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHHcCCCcEEeccC
Confidence 99999999999999864
No 6
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=4.3e-51 Score=363.46 Aligned_cols=177 Identities=39% Similarity=0.657 Sum_probs=172.2
Q ss_pred CCCcchhcccCcEEEEcceeChh----------HHHHHHHHHHHHhccCCCCCEEEEEeCCCCc---------HHHHHHH
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSM----------VAQRAISQLVTLATIDEDADILMYLNCPGGS---------IYSVLAI 154 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~----------~a~~ii~~L~~l~~~~~~~~I~L~INSPGGs---------V~ag~~I 154 (271)
+.|++++|+++|||||+++|+++ +++.++++|++|+.+++.++|.||||||||+ +++|++|
T Consensus 20 ~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaI 99 (222)
T PRK12552 20 PPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAI 99 (222)
T ss_pred CcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHH
Confidence 57999999999999999999999 9999999999999999899999999999988 7788999
Q ss_pred HHHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 024202 155 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAF 234 (271)
Q Consensus 155 yd~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~ 234 (271)
||+|+.++.+|+|+|.|+|||+|++|+++|++|+|+++|||++|||||+++..|++.|++.++++++++++.+.++|+++
T Consensus 100 yD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~ 179 (222)
T PRK12552 100 CDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRN 179 (222)
T ss_pred HHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhhCCccccHHHHHHcCCceeeccCC
Q 024202 235 TGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270 (271)
Q Consensus 235 tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~ 270 (271)
||++.++|.++++||+||||+||++|||||+|++++
T Consensus 180 TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 180 TGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 999999999999999999999999999999999763
No 7
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=1e-50 Score=357.03 Aligned_cols=177 Identities=40% Similarity=0.698 Sum_probs=173.4
Q ss_pred CCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEeccc
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
|.|++++|+++|||||+++||+++++.++++|++|+.+++.++|.||||||||++++|++|||+|+.++.||+|+|.|+|
T Consensus 20 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G~A 99 (200)
T CHL00028 20 WVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLGLA 99 (200)
T ss_pred cccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEeh
Confidence 78999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG-SGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g-~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
||+|++|+++|++|+|++.|||++|||||+++ ..|++.|+..++++++++++.+.++|+++||++.+++++++++++||
T Consensus 100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~l 179 (200)
T CHL00028 100 ASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFM 179 (200)
T ss_pred HHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccC
Confidence 99999999999999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCceeeccCC
Q 024202 253 SAAEAMEFGLIDGILETE 270 (271)
Q Consensus 253 sa~EAle~GLID~I~~~~ 270 (271)
||+||++|||||+|++++
T Consensus 180 ta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 180 SATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CHHHHHHcCCCcEEeecC
Confidence 999999999999999864
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=2.2e-47 Score=333.77 Aligned_cols=175 Identities=45% Similarity=0.765 Sum_probs=171.2
Q ss_pred CCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEeccc
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
++|++++|+++|+||++|+|++.+++.++.+|++++.+++.++|+|+||||||+++++++|||+|+.++.||+|+|.|.|
T Consensus 16 ~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~A 95 (191)
T TIGR00493 16 SFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGQA 95 (191)
T ss_pred cccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEEee
Confidence 78999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
||+|++|+++|++|+|++.|||++|+|||+++..|++.|++.++++++++++.+.++|+++||++.+++++++++++|||
T Consensus 96 aSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lt 175 (191)
T TIGR00493 96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMS 175 (191)
T ss_pred ccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCc
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecc
Q 024202 254 AAEAMEFGLIDGILE 268 (271)
Q Consensus 254 a~EAle~GLID~I~~ 268 (271)
++||++|||||+|++
T Consensus 176 a~EA~~~GliD~ii~ 190 (191)
T TIGR00493 176 AEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHcCCccEEec
Confidence 999999999999986
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=329.40 Aligned_cols=178 Identities=31% Similarity=0.527 Sum_probs=172.2
Q ss_pred CCCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecc
Q 024202 93 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 93 g~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.|++++|+++|+|||.|+|++.+++.|+++|++++..++.++|+|+||||||+|++|++|||+|+.++.||+|+|.|.
T Consensus 12 ~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~ 91 (197)
T PRK14512 12 GIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGL 91 (197)
T ss_pred CcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 46789999999999999999999999999999999998777899999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|||+|++|+++|++|+|++.||+++|+|||+++..|++.|++.++++++++++.+.++|+++||++.+++++++++++||
T Consensus 92 AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~l 171 (197)
T PRK14512 92 VASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWL 171 (197)
T ss_pred eHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCccc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCceeeccCC
Q 024202 253 SAAEAMEFGLIDGILETE 270 (271)
Q Consensus 253 sa~EAle~GLID~I~~~~ 270 (271)
||+||++|||||+|++++
T Consensus 172 ta~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 172 DSSSAVKYGLVFEVVETR 189 (197)
T ss_pred CHHHHHHcCCccEeecCc
Confidence 999999999999999864
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4e-46 Score=327.88 Aligned_cols=187 Identities=43% Similarity=0.768 Sum_probs=176.9
Q ss_pred cccEEecCC----CCCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHH
Q 024202 84 LMPAVMTPG----GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 159 (271)
Q Consensus 84 ~~~~~~~~~----g~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~ 159 (271)
+.|.++.+. .++|+++.|+++|+|||+|+||+.+++.++++|++++.+++.++|+|+||||||++++|++|||+|+
T Consensus 7 ~~p~~~~~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~ 86 (200)
T PRK00277 7 LVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQ 86 (200)
T ss_pred CCceeeccCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHH
Confidence 355555322 2799999999999999999999999999999999999988889999999999999999999999999
Q ss_pred hhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 024202 160 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPI 239 (271)
Q Consensus 160 ~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~ 239 (271)
.++.||+|+|.|.|+|+|++|+++|++|+|++.|++++|+|+|+++..|++.|++.++++++++++.+.++|+++||+++
T Consensus 87 ~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~ 166 (200)
T PRK00277 87 FIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPL 166 (200)
T ss_pred hcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHhhCCccccHHHHHHcCCceeeccCC
Q 024202 240 EKVQQYTERDRFLSAAEAMEFGLIDGILETE 270 (271)
Q Consensus 240 e~i~~~~~~~~~lsa~EAle~GLID~I~~~~ 270 (271)
+++++++++++||||+||+++||||+|++++
T Consensus 167 ~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 167 EKIEKDTDRDNFMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred HHHHHHhhCCccccHHHHHHcCCccEEeecC
Confidence 9999999999999999999999999999864
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=1.1e-45 Score=318.54 Aligned_cols=177 Identities=42% Similarity=0.700 Sum_probs=168.1
Q ss_pred CCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEeccc
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
|+|+|++|+++|+|||.|+||+.+++.++++|.+|+.+++.++|+|+||||||++++|++|||+|+.++.||+|+|.|.|
T Consensus 6 ~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 6 WYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp EEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred EEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 78999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
||+|++|+++|++++|++.|+|.||+|+|..+..|+..++..+.++++++++.+.++|+++||++++++++++++++||+
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~ 165 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLS 165 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEE
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcccc
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeccCC
Q 024202 254 AAEAMEFGLIDGILETE 270 (271)
Q Consensus 254 a~EAle~GLID~I~~~~ 270 (271)
|+||+++||||+|++++
T Consensus 166 a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 166 AEEALEYGIIDEIIESR 182 (182)
T ss_dssp HHHHHHHTSSSEEESS-
T ss_pred HHHHHHcCCCCEeccCC
Confidence 99999999999999875
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.2e-44 Score=320.11 Aligned_cols=177 Identities=42% Similarity=0.756 Sum_probs=171.1
Q ss_pred CCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEeccc
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
+.|++++|+++|+|||+|+|++.+++.++++|++++.+++.++|+|+||||||+++++++|||+|+.++.||+|+|.|.|
T Consensus 25 ~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 25 ESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred cccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 58999999999999999999999999999999999988878999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCC--CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ--SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~--~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
||+|++|+++|++|+|++.||+++|+|||+ ++..|++.|++.+.++++++++.+.++|+++||++.+++++++++++|
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~ 184 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKW 184 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcc
Confidence 999999999999999999999999999998 567899999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHcCCceeeccCC
Q 024202 252 LSAAEAMEFGLIDGILETE 270 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~~ 270 (271)
|||+||+++||||+|+++.
T Consensus 185 lta~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 185 LTAEEAKDYGLVDQIITSY 203 (207)
T ss_pred ccHHHHHHcCCccEEcCch
Confidence 9999999999999999763
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=4e-44 Score=307.49 Aligned_cols=171 Identities=49% Similarity=0.857 Sum_probs=166.7
Q ss_pred CcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccch
Q 024202 96 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 175 (271)
Q Consensus 96 dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AAS 175 (271)
|++++|+++|+||++|+|++.+++.++++|.+++.+++.++|+|+||||||+++++++|||.|+.++.||+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 78999999999999999999999999999999998887899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~ 255 (271)
+|++|+++|++|+|++.||+++|+|+|+++..|+..|+..++++++++++.+.++|+++||++.+++.+++++++|||++
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceee
Q 024202 256 EAMEFGLIDGI 266 (271)
Q Consensus 256 EAle~GLID~I 266 (271)
||+++||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=2.4e-43 Score=300.64 Aligned_cols=162 Identities=35% Similarity=0.597 Sum_probs=158.4
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccchHHHHHHhcC
Q 024202 105 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGG 184 (271)
Q Consensus 105 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~ag 184 (271)
|+|||.|+|++.+++.++++|++++.+++.++|+|+||||||+++++++|||+|+.++.||+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 78999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCce
Q 024202 185 EKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLID 264 (271)
Q Consensus 185 dkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID 264 (271)
++|+|+++|++++|+|+|+++..|+..|++.+.++++++++.|.++|+++||++++++++++++++||+++||+++||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 024202 265 GI 266 (271)
Q Consensus 265 ~I 266 (271)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=1.5e-33 Score=238.37 Aligned_cols=156 Identities=31% Similarity=0.487 Sum_probs=148.9
Q ss_pred EEEEcceeCh---hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccchHHHHHHh
Q 024202 106 IIFIGQPINS---MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 182 (271)
Q Consensus 106 II~l~g~Id~---~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~ 182 (271)
.|+|.|+|+. .+++.+.+.|.++..+ ++|.|+||||||++.+++.|++.|+.+++||++++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 5789999999 7999999999987654 789999999999999999999999999999999999999999999999
Q ss_pred cCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCC
Q 024202 183 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262 (271)
Q Consensus 183 agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GL 262 (271)
+||+ |++.|+++||+|+|..+..|+..++....++++++++.+.+.|++++|++++++++++.+++||+++||+++||
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 9998 99999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred ceee
Q 024202 263 IDGI 266 (271)
Q Consensus 263 ID~I 266 (271)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.98 E-value=1.9e-31 Score=229.79 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=137.9
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEe---cccchHHHHHHh
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 182 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~---G~AASaa~lIa~ 182 (271)
+|.+.|.|++.+...+.+.|...+. ++.+.|+|+||||||++++++.||+.|+..++||+++|. |+|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 5678999999999999998888765 468999999999999999999999999999999999999 999999999999
Q ss_pred cCCcCcEEeccCcEEeeecCCCCCCCC-----chhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Q 024202 183 GGEKGMRYAMPNARIMLNQPQSGSGGH-----VEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257 (271)
Q Consensus 183 agdkg~R~a~PnS~imiHqp~~g~~G~-----~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EA 257 (271)
+|++ |++.|+++++.|+|..+ .|+ ..+.+.+..++.++++ +++++|++.+.+++++++++|||++||
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 9999 99999999999999764 354 3455555555555444 999999999999999999999999999
Q ss_pred HHcCCceeeccC
Q 024202 258 MEFGLIDGILET 269 (271)
Q Consensus 258 le~GLID~I~~~ 269 (271)
+++|+||.|.++
T Consensus 154 ~~~G~iD~ia~~ 165 (172)
T cd07015 154 LKYGVIEVVARD 165 (172)
T ss_pred HHcCCceeeeCC
Confidence 999999999876
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.98 E-value=2.8e-31 Score=223.85 Aligned_cols=159 Identities=26% Similarity=0.344 Sum_probs=148.5
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccchHHHHHHhcCC
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 185 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agd 185 (271)
+|+|+|+|++.+.+.+++.|..++.+++.+.|+|++|||||++.++..|+++|+.+++||++++.|.|+|+|++|+++||
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEeccCcEEeeecCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCc
Q 024202 186 KGMRYAMPNARIMLNQPQSGSGGHV--EDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLI 263 (271)
Q Consensus 186 kg~R~a~PnS~imiHqp~~g~~G~~--~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLI 263 (271)
+ |++.|++.+++|+|..+..|.. .+.+...+.++.+.+.+.+.+++++|++.+++++++.++.||+++||+++|||
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 8 9999999999999987665544 56666667888899999999999999999999999999999999999999999
Q ss_pred eee
Q 024202 264 DGI 266 (271)
Q Consensus 264 D~I 266 (271)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.96 E-value=6.3e-28 Score=209.72 Aligned_cols=161 Identities=20% Similarity=0.181 Sum_probs=139.3
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEe---cccchHHHHHHh
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 182 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~---G~AASaa~lIa~ 182 (271)
+|.|+|+|++..+..+.++|+.++.+ +.+.|+|+||||||+++++..|++.|+.+++||++.|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 57799999999999999999998865 47999999999999999999999999999999999998 999999999999
Q ss_pred cCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCC
Q 024202 183 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262 (271)
Q Consensus 183 agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GL 262 (271)
+||+ |++.|+++|++|.|..+..+...+...+.+.+..+.. +...|++++|++.+.+++++..++||+++||+++||
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Gl 158 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCC
Confidence 9999 9999999999999985433332233444455555543 567899999999999999888999999999999999
Q ss_pred ceeeccCC
Q 024202 263 IDGILETE 270 (271)
Q Consensus 263 ID~I~~~~ 270 (271)
||+|++++
T Consensus 159 vd~v~~~~ 166 (187)
T cd07020 159 IDLIAADL 166 (187)
T ss_pred cccccCCH
Confidence 99998763
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.94 E-value=6.8e-26 Score=196.28 Aligned_cols=156 Identities=24% Similarity=0.269 Sum_probs=135.1
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccchHHHHHHhcCC
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 185 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agd 185 (271)
+|.+.|+|++.+...+.+.|..+.+++ .+.|+|+||||||.++++..|++.|+.+++||++++.|.|+|+|++|+++||
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 567999999999999999998887764 8899999999999999999999999999999999999999999999999999
Q ss_pred cCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC-------------ccc
Q 024202 186 KGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD-------------RFL 252 (271)
Q Consensus 186 kg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~-------------~~l 252 (271)
+ +++.|++.++.|.|.....++..+ .+....+. .+.+.|++++|++.+.++++++++ .||
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~----~K~~~~~~-~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD----EKVQSYWR-AKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh----HHHHHHHH-HHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 9 999999999999998654443222 12222233 345669999999999999999988 599
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
|++||+++|++|.|.++
T Consensus 155 ta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 155 TADEALKVGYAEGIAGS 171 (178)
T ss_pred CHHHHHHhCCeEEEECC
Confidence 99999999999999875
No 20
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.88 E-value=8.3e-22 Score=184.57 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=127.8
Q ss_pred EEEEcceeChhH-------HHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCC--ceEEEEecccchH
Q 024202 106 IIFIGQPINSMV-------AQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKP--KVGTVCFGVAASQ 176 (271)
Q Consensus 106 II~l~g~Id~~~-------a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~--pV~tvv~G~AASa 176 (271)
+|.+.|.|.... .+.+.+.|..+..+++.++|+|+||||||++.++..||+.|+.++. ||++++.++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 356777776543 6677788888888888999999999999999999999999999986 6999999999999
Q ss_pred HHHHHhcCCcCcEEeccCcEEe------eecCCC------C------CCCCchh------------hHHHHHHHHHHHHH
Q 024202 177 AAIILAGGEKGMRYAMPNARIM------LNQPQS------G------SGGHVED------------VKRQVNEAVISRHK 226 (271)
Q Consensus 177 a~lIa~agdkg~R~a~PnS~im------iHqp~~------g------~~G~~~d------------i~~~~~el~~~~~~ 226 (271)
||||+|+||+ ++|.|++.++ .|.... | ..|..++ .....+++++..+.
T Consensus 143 GY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 143 GYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred hhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999753 221110 0 1232222 22233566677888
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 227 IDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 227 i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
|.+.+++.++++.+++.+..+ ++.|++++|++.||||++++.
T Consensus 221 F~~~V~~~R~~~~~~~~~~a~-g~v~~g~~A~~~gLVDelg~~ 262 (317)
T COG0616 221 FVDKVAEGRGLSDEAVDKLAT-GRVWTGQQALELGLVDELGGL 262 (317)
T ss_pred HHHHHHhcCCCChhHHHHHhc-cceecHHHhhhcCCchhcCCH
Confidence 899999999999988776655 788999999999999999864
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.87 E-value=2.9e-21 Score=170.43 Aligned_cols=159 Identities=19% Similarity=0.243 Sum_probs=130.2
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhC--CceEEEEecccchHHHHHHhc
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGVAASQAAIILAG 183 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~--~pV~tvv~G~AASaa~lIa~a 183 (271)
+|.+.|+|+ .+...+.+.|..+..++..+.|+|++|||||++..+..|++.|+.++ +||++++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 678999998 56788999999998888889999999999999999999999999998 899999999999999999999
Q ss_pred CCcCcEEeccCcEEeeecCCC------------C------CCCCch------------hhHHHHHHHHHHHHHHHHHHHH
Q 024202 184 GEKGMRYAMPNARIMLNQPQS------------G------SGGHVE------------DVKRQVNEAVISRHKIDRMYAA 233 (271)
Q Consensus 184 gdkg~R~a~PnS~imiHqp~~------------g------~~G~~~------------di~~~~~el~~~~~~i~~iya~ 233 (271)
||+ |++.|++.++...+.. | ..|+.+ +.+...+.++.+.+.|.+.+++
T Consensus 83 aD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~ 160 (207)
T TIGR00706 83 ADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK 160 (207)
T ss_pred CCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 9999998764322210 1 122221 1122234456677788888999
Q ss_pred HhCCCHHHHHHHhhCCccccHHHHHHcCCceeecc
Q 024202 234 FTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 234 ~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~ 268 (271)
.+|++.++++++++. ..|+++||+++||||+|..
T Consensus 161 ~R~~~~~~~~~~~~~-~~~~~~~A~~~gLvD~i~~ 194 (207)
T TIGR00706 161 GRNLPVEDVKKFADG-RVFTGRQALKLRLVDKLGT 194 (207)
T ss_pred cCCCCHHHHHHHhcC-CcccHHHHHHcCCCcccCC
Confidence 999999999998875 4679999999999999975
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.86 E-value=8.6e-21 Score=163.14 Aligned_cols=144 Identities=15% Similarity=0.034 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCceEEEEecccchHHHHHHhcCCcCcEEecc
Q 024202 117 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193 (271)
Q Consensus 117 ~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~---~~pV~tvv~G~AASaa~lIa~agdkg~R~a~P 193 (271)
+.+.+.+.|..++.++..+.|+|.+|||||++.....+++.++.+ ++||++++.|.|+|+|++|+++||. +++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 467899999999988888999999999999999888877766554 6899999999999999999999999 99999
Q ss_pred CcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 194 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 194 nS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
++.|++|.+..+ .......+..+.+.|.+.+++.+|++.+++.+++..+.+|+++||+++||||+|...
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~ 169 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence 999999977653 111224566778889999999999999999999888899999999999999999763
No 23
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.86 E-value=9.9e-21 Score=166.66 Aligned_cols=160 Identities=23% Similarity=0.198 Sum_probs=130.9
Q ss_pred EEEEcceeC---hhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCceEEEEecccchHHHH
Q 024202 106 IIFIGQPIN---SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAASQAAI 179 (271)
Q Consensus 106 II~l~g~Id---~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~---~~pV~tvv~G~AASaa~l 179 (271)
+|.+.|+|+ +.+...+.++|..++.++..+.|+|.+|||||++..+..+++.++.+ ++||++++.|.|+|+|++
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 578999999 78999999999999988889999999999999999999999988766 469999999999999999
Q ss_pred HHhcCCcCcEEeccCcEEeeecCC------------------CCCCCCch------------hhHHHHHHHHHHHHHHHH
Q 024202 180 ILAGGEKGMRYAMPNARIMLNQPQ------------------SGSGGHVE------------DVKRQVNEAVISRHKIDR 229 (271)
Q Consensus 180 Ia~agdkg~R~a~PnS~imiHqp~------------------~g~~G~~~------------di~~~~~el~~~~~~i~~ 229 (271)
|+++||+ |++.|++.+...... ....|..+ +.+...+.++.+.+.|.+
T Consensus 84 lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~ 161 (208)
T cd07023 84 IAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999987422111 00112111 223334456677788889
Q ss_pred HHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeecc
Q 024202 230 MYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 230 iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~ 268 (271)
.+++.+|++.+++.++.+. ..|+++||+++||||+|..
T Consensus 162 ~Va~~R~~~~~~~~~~~~~-~~~~a~~A~~~gLiD~i~~ 199 (208)
T cd07023 162 VVAEGRGMSGERLDKLADG-RVWTGRQALELGLVDELGG 199 (208)
T ss_pred HHHhcCCCCHHHHHHhcCC-cEEEHHHHHHcCCCcccCC
Confidence 9999999999999988875 4568999999999999975
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.85 E-value=1.9e-20 Score=187.94 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=129.5
Q ss_pred EEEEcceeChh-------HHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCceEEEEecccch
Q 024202 106 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS 175 (271)
Q Consensus 106 II~l~g~Id~~-------~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~---~~pV~tvv~G~AAS 175 (271)
+|+++|+|.+. ..+.+.+.|..+..++..+.|+|+||||||++.++..|+++|+.+ ++||++++.|+|||
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 68899999752 256788889888888888999999999999999999999999865 47999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEE------eeecCC------CC------CCCC-----------chhhHHHHHHHHHHHHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARI------MLNQPQ------SG------SGGH-----------VEDVKRQVNEAVISRHK 226 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~i------miHqp~------~g------~~G~-----------~~di~~~~~el~~~~~~ 226 (271)
+||+|+++||+ +++.|++.+ +.+... .| ..|. .++.+.....++...+.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999876 333210 01 1121 22334445566778888
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeecc
Q 024202 227 IDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 227 i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~ 268 (271)
|.+.+++.+|++.++++++++ ++.|+++||+++||||+|+.
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~-Grv~tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQ-GRVWTGEDAVSNGLVDALGG 510 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHh-CCCcCHHHHHHcCCcccCCC
Confidence 888999999999999998887 56779999999999999964
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.85 E-value=4.4e-20 Score=163.54 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhC--CceEEEEecccchHHHHHHhcCCcCcEEecc
Q 024202 116 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGVAASQAAIILAGGEKGMRYAMP 193 (271)
Q Consensus 116 ~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~--~pV~tvv~G~AASaa~lIa~agdkg~R~a~P 193 (271)
.+...+++.|..++.++..+.|+|.+|||||++.....|+++|+.++ +||++++.|.|+|+|++++++||+ +++.|
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~ 102 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAADR--IVVTP 102 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCE--EEEcC
Confidence 45789999999999888899999999999999999999999999998 999999999999999999999999 99999
Q ss_pred CcEEeeec------CCC------C------CCCCch------------hhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 024202 194 NARIMLNQ------PQS------G------SGGHVE------------DVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243 (271)
Q Consensus 194 nS~imiHq------p~~------g------~~G~~~------------di~~~~~el~~~~~~i~~iya~~tG~~~e~i~ 243 (271)
++.++... ... | ..|..+ +.+...+.++.+.+.|.+.+++.+|++.++++
T Consensus 103 ~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~ 182 (214)
T cd07022 103 TAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVR 182 (214)
T ss_pred CCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99864322 110 1 122221 11223344566788888999999999999999
Q ss_pred HHhhCCccccHHHHHHcCCceeecc
Q 024202 244 QYTERDRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 244 ~~~~~~~~lsa~EAle~GLID~I~~ 268 (271)
+++ +..|+++||+++||||+|..
T Consensus 183 ~~~--~~~~~~~~Al~~gLvD~i~~ 205 (214)
T cd07022 183 ATE--GGVFRGQEAVAAGLADAVGT 205 (214)
T ss_pred Hhh--cCeeeHHHHHHcCCCcccCC
Confidence 877 66789999999999999975
No 26
>PRK10949 protease 4; Provisional
Probab=99.82 E-value=1.5e-19 Score=182.22 Aligned_cols=160 Identities=17% Similarity=0.124 Sum_probs=127.3
Q ss_pred EEEEcceeChh-------HHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCceEEEEecccch
Q 024202 106 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS 175 (271)
Q Consensus 106 II~l~g~Id~~-------~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~---~~pV~tvv~G~AAS 175 (271)
+|++.|.|.+. ..+.++++|+.+..++.+++|+|+||||||++.++..|++.|+.. ++||++++.++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 57788998653 356789999999999999999999999999999999999999765 47999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEE------eeecCC------CC------CCCCch-----------hhHHHHHHHHHHHHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARI------MLNQPQ------SG------SGGHVE-----------DVKRQVNEAVISRHK 226 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~i------miHqp~------~g------~~G~~~-----------di~~~~~el~~~~~~ 226 (271)
+||||+++||+ +++.|++.. +.|... .| ..|... +.+.....++...+.
T Consensus 410 ggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~ 487 (618)
T PRK10949 410 GGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKR 487 (618)
T ss_pred HHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999998753 223211 01 112211 112223455667788
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeecc
Q 024202 227 IDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 227 i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~ 268 (271)
|.+.+++.++++.++++++.+ ++.|+++||++.||||+++.
T Consensus 488 F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~ 528 (618)
T PRK10949 488 FITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGD 528 (618)
T ss_pred HHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCC
Confidence 888999999999999998765 68999999999999999975
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.82 E-value=3.4e-19 Score=157.69 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=126.3
Q ss_pred EEEEcceeChhH-------HHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHH---hhCCceEEEEecccch
Q 024202 106 IIFIGQPINSMV-------AQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS---WIKPKVGTVCFGVAAS 175 (271)
Q Consensus 106 II~l~g~Id~~~-------a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~---~~~~pV~tvv~G~AAS 175 (271)
+|.+.|+|.+.. ...+.+.|..+..++..+.|+|.+|||||++.....++++|+ ..++||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 456667765532 367999999999988889999999999999999988888655 4567999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCC------------CC-------CCCCc----------hhhHHHHHHHHHHHHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQ------------SG-------SGGHV----------EDVKRQVNEAVISRHK 226 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~------------~g-------~~G~~----------~di~~~~~el~~~~~~ 226 (271)
+|++|+++||+ +++.|++.+...... .| ..|.. ++-......++.+.+.
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999887433211 01 01211 1112223456777888
Q ss_pred HHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 227 IDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 227 i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
|.+.+++.+++++++++++.+ +.+|+++||+++||||+|...
T Consensus 162 f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~ 203 (211)
T cd07019 162 FITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDF 203 (211)
T ss_pred HHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCH
Confidence 899999999999999998765 679999999999999999763
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.78 E-value=5.3e-18 Score=159.38 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=108.3
Q ss_pred EEEEcceeChhHHHHHHHHHHHHh-ccCCCCCEEEEEeCCCCcHHHHHHHHHHH---HhhCCceEEEEecccchHHHHHH
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLA-TIDEDADILMYLNCPGGSIYSVLAIYDCM---SWIKPKVGTVCFGVAASQAAIIL 181 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~-~~~~~~~I~L~INSPGGsV~ag~~Iyd~I---~~~~~pV~tvv~G~AASaa~lIa 181 (271)
+|.+.|.|+......+.+.+..+. ...+.+.|+|+||||||++.++..++..| +..++||++++.++|||+||||+
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 466889998766544444444321 11223789999999999998765555544 44557999999999999999999
Q ss_pred hcCCcCcEEeccCcEEeeecCCC------------C------CCCCchh------------hHHHHHHHHHHHHHHHHHH
Q 024202 182 AGGEKGMRYAMPNARIMLNQPQS------------G------SGGHVED------------VKRQVNEAVISRHKIDRMY 231 (271)
Q Consensus 182 ~agdkg~R~a~PnS~imiHqp~~------------g------~~G~~~d------------i~~~~~el~~~~~~i~~iy 231 (271)
|+||+ +++.|.+.++...... | ..|..++ .+...++++.+.+.|.+.+
T Consensus 174 saAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~V 251 (330)
T PRK11778 174 CVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFV 251 (330)
T ss_pred HhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999998865332210 0 1232221 1223345566677777788
Q ss_pred HHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 232 AAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 232 a~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
++.++ ...++++.+ +..|+++||+++||||+|...
T Consensus 252 a~~R~--~l~~~~va~-G~v~~g~~Al~~GLVD~Ig~~ 286 (330)
T PRK11778 252 QRYRP--QLDIDKVAT-GEHWYGQQALELGLVDEIQTS 286 (330)
T ss_pred HhcCC--cCCHHHHHh-CCCcCHHHHHHCCCCCcCCCH
Confidence 87774 223444444 567899999999999999764
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.76 E-value=1e-17 Score=149.26 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=124.5
Q ss_pred ceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh---CCceEEEEecccchHHHHHHhcCCcC
Q 024202 111 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAASQAAIILAGGEKG 187 (271)
Q Consensus 111 g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~---~~pV~tvv~G~AASaa~lIa~agdkg 187 (271)
+..+..+...+++.|.++..++..+.|+|.+|||||.+.+...|+++|+.+ ++||++++.+ |+|+||+|+++||+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~- 101 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE- 101 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE-
Confidence 344556678999999999998889999999999999999999999999765 4799999887 99999999999999
Q ss_pred cEEeccCcEEeeecCCCC------------------CCCCchh---------h-----HHHHHHHHHHHHHHHHHHHHHh
Q 024202 188 MRYAMPNARIMLNQPQSG------------------SGGHVED---------V-----KRQVNEAVISRHKIDRMYAAFT 235 (271)
Q Consensus 188 ~R~a~PnS~imiHqp~~g------------------~~G~~~d---------i-----~~~~~el~~~~~~i~~iya~~t 235 (271)
+++.|++.+++...... ..|..++ + +...+.++.+.+.|.+.+++.+
T Consensus 102 -I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R 180 (222)
T cd07018 102 -IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASR 180 (222)
T ss_pred -EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999887643211 0122211 1 1122344557778888899999
Q ss_pred CCCHHHHHHHhhCCccccHHHHHHcCCceeecc
Q 024202 236 GQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 236 G~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~ 268 (271)
+++.++++++.+ +..|+++||++.||||+|..
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~ 212 (222)
T cd07018 181 GLSPDALEALID-LGGDSAEEALEAGLVDGLAY 212 (222)
T ss_pred CCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCc
Confidence 999999998887 67899999999999999975
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-16 Score=152.70 Aligned_cols=156 Identities=22% Similarity=0.213 Sum_probs=130.7
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEe---cccchHHHHHHh
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 182 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~---G~AASaa~lIa~ 182 (271)
++.++|+|++.+++.+.+.|+..++++ ...++|.+|+|||-+++...|.+.|.+.+.||+.++. ++|+|+|+||++
T Consensus 30 vi~i~g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m 108 (436)
T COG1030 30 VIEIDGAIDPASADYLQRALQSAEEEN-AAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILM 108 (436)
T ss_pred EEEecCccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHH
Confidence 566999999999999999999887654 6899999999999999999999999999999888884 489999999999
Q ss_pred cCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCC
Q 024202 183 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGL 262 (271)
Q Consensus 183 agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GL 262 (271)
++|. .+|.|++.++-.+|..+. |+..+-+. ....+. ...+-.++.+|++.+..+++.+++.-++++||++.|+
T Consensus 109 ~~hi--aaMAPgT~iGaa~Pi~~~-g~~~~~~~---~~n~~~-ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~v 181 (436)
T COG1030 109 ATHI--AAMAPGTNIGAATPIAGG-GTSAKEAN---TTNAAV-AYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGV 181 (436)
T ss_pred hcCh--hhhCCCCcccccceecCC-CCCccchh---hHHHHH-HHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCc
Confidence 9999 999999999999987543 33322222 112222 3345678889999999999999999999999999999
Q ss_pred ceeeccC
Q 024202 263 IDGILET 269 (271)
Q Consensus 263 ID~I~~~ 269 (271)
||-+..+
T Consensus 182 id~iA~~ 188 (436)
T COG1030 182 IDLIARD 188 (436)
T ss_pred cccccCC
Confidence 9988764
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.56 E-value=1.8e-13 Score=124.96 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=107.0
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccchHHHHHHhcCCcCc
Q 024202 109 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGM 188 (271)
Q Consensus 109 l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~ 188 (271)
+...||.+.++.+.+.+.... +.++|.|.||||||.+.++..|.++|+.+..+++++|-..|.|+|++|+++||+
T Consensus 68 i~~~I~i~dse~v~raI~~~~---~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe-- 142 (285)
T PF01972_consen 68 IYRYIDIDDSEFVLRAIREAP---KDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE-- 142 (285)
T ss_pred cceeEcHhhHHHHHHHHHhcC---CCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--
Confidence 456788888999988887643 346899999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcEEeeecCCCCCCC--------------CchhhH-HH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHh---
Q 024202 189 RYAMPNARIMLNQPQSGSGG--------------HVEDVK-RQ----VNEAVISRHKIDRMYAAFTGQPIEKVQQYT--- 246 (271)
Q Consensus 189 R~a~PnS~imiHqp~~g~~G--------------~~~di~-~~----~~el~~~~~~i~~iya~~tG~~~e~i~~~~--- 246 (271)
++|.|+|.++--.|..+..- ..+|.- .. .+.+.++++...+.+.. +++.++.+++.
T Consensus 143 IvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~--~~~~eka~~ia~~L 220 (285)
T PF01972_consen 143 IVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD--KMDEEKAEEIAEKL 220 (285)
T ss_pred EEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHh
Confidence 99999999987777643110 011100 01 12223333333333433 34555554432
Q ss_pred h-----CCccccHHHHHHcCC
Q 024202 247 E-----RDRFLSAAEAMEFGL 262 (271)
Q Consensus 247 ~-----~~~~lsa~EAle~GL 262 (271)
. .|+-++.+||+++||
T Consensus 221 ~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 221 SSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred cCCCCCCCCCCCHHHHHHcCC
Confidence 2 466799999999998
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.45 E-value=1.3e-12 Score=131.59 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHhccCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhhC---CceEEEEecccchHHHHHHhcCCcCcEE
Q 024202 115 SMVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIK---PKVGTVCFGVAASQAAIILAGGEKGMRY 190 (271)
Q Consensus 115 ~~~a~~ii~~L~~l~~~~~~~~I~L~INS-PGGsV~ag~~Iyd~I~~~~---~pV~tvv~G~AASaa~lIa~agdkg~R~ 190 (271)
+.....++++|+.+..++..+.|+|.+|+ |||.+....+|+++|+.++ +||+++..+ ++|++|||+++||+ +|
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~AD~--I~ 151 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASFADE--II 151 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhhCCE--EE
Confidence 34667999999999999999999999996 6788888899999998774 799998665 57999999999999 99
Q ss_pred eccCcEEeeecCCCC------------------CCCCch---------hh-----HHHHHHHHHHHHHHHHHHHHHhCCC
Q 024202 191 AMPNARIMLNQPQSG------------------SGGHVE---------DV-----KRQVNEAVISRHKIDRMYAAFTGQP 238 (271)
Q Consensus 191 a~PnS~imiHqp~~g------------------~~G~~~---------di-----~~~~~el~~~~~~i~~iya~~tG~~ 238 (271)
+.|.+.++++..... ..|..+ ++ +.....++.+.+.+.+.+++.++++
T Consensus 152 ~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~ 231 (584)
T TIGR00705 152 LNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIP 231 (584)
T ss_pred ECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999998876543211 012211 22 1223345567778888889999999
Q ss_pred HHHHHHHhhCCcc-------ccHHHHHHcCCceeecc
Q 024202 239 IEKVQQYTERDRF-------LSAAEAMEFGLIDGILE 268 (271)
Q Consensus 239 ~e~i~~~~~~~~~-------lsa~EAle~GLID~I~~ 268 (271)
.+++.++.+.-.| +++++|++.||||+|..
T Consensus 232 ~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~ 268 (584)
T TIGR00705 232 VQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCS 268 (584)
T ss_pred HHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCC
Confidence 9999887764222 28999999999999974
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.40 E-value=1.3e-12 Score=110.38 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=78.1
Q ss_pred HHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCC------------C------CCCCch--------
Q 024202 158 MSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS------------G------SGGHVE-------- 211 (271)
Q Consensus 158 I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~------------g------~~G~~~-------- 211 (271)
.+..++||++++.++|+|++|+|+++||+ +++.|.+.++...... | ..|+.+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 46678999999999999999999999999 9999999875443211 1 022221
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeecc
Q 024202 212 ----DVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 212 ----di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~ 268 (271)
+.+...+.++.+.+.|.+.+++.+|++.++++++.+ +..|+++||+++||||+|..
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~-~~~~~~~~A~~~GLiD~i~~ 139 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIAD-GGVFTAQQALELGLIDEIGT 139 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHC-CHEEEHHHHHHTTSSSEETS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHh-hccccHHHHHHcCchhhcCC
Confidence 112223455667788888899999999999999887 58899999999999999975
No 34
>PRK10949 protease 4; Provisional
Probab=99.38 E-value=8.7e-12 Score=126.26 Aligned_cols=151 Identities=12% Similarity=-0.011 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHH-HHHHHHHHhhC---CceEEEEecccchHHHHHHhcCCcCcEE
Q 024202 115 SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV-LAIYDCMSWIK---PKVGTVCFGVAASQAAIILAGGEKGMRY 190 (271)
Q Consensus 115 ~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag-~~Iyd~I~~~~---~pV~tvv~G~AASaa~lIa~agdkg~R~ 190 (271)
+.....++++|+.++.++..+.|+|++|+|||...+. .+|+++|+.++ +||+++ ...++|.+|||+++||+ +|
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence 3456789999999999999999999999998876654 78999987775 688886 56778999999999999 99
Q ss_pred eccCcEEeeecCCCC------------------CCCCc---------hhhH----H-HHHHHHHHHHHHHHHHHHHhCCC
Q 024202 191 AMPNARIMLNQPQSG------------------SGGHV---------EDVK----R-QVNEAVISRHKIDRMYAAFTGQP 238 (271)
Q Consensus 191 a~PnS~imiHqp~~g------------------~~G~~---------~di~----~-~~~el~~~~~~i~~iya~~tG~~ 238 (271)
+.|.+.++++..... ..|.. +++. + ....++.+.+.+.+.+++.++++
T Consensus 171 l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~ 250 (618)
T PRK10949 171 LSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIT 250 (618)
T ss_pred ECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999998877654321 01221 1221 1 22344556777888899999999
Q ss_pred HHHHHHHhh----C---CccccHHHHHHcCCceeecc
Q 024202 239 IEKVQQYTE----R---DRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 239 ~e~i~~~~~----~---~~~lsa~EAle~GLID~I~~ 268 (271)
.+++....+ + ...+++++|++.||||+|..
T Consensus 251 ~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~ 287 (618)
T PRK10949 251 PQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALAS 287 (618)
T ss_pred HHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCC
Confidence 999854332 1 12368999999999999975
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.07 E-value=3.8e-09 Score=90.88 Aligned_cols=139 Identities=15% Similarity=0.187 Sum_probs=99.5
Q ss_pred eeChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHH-----------------HHHHHHHHHHhhCCceEEEEe
Q 024202 112 PINSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIY-----------------SVLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 112 ~Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~-----------------ag~~Iyd~I~~~~~pV~tvv~ 170 (271)
.++.++.+.+.+.+..++.++..+.|+|.-+ |.|+++. ....++..|..+++|+++.+.
T Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~ 101 (195)
T cd06558 22 ALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN 101 (195)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3577888999999999988766676666655 5566643 235666777788899999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|.++|..++++||. |++.++++|.+.....|.. + +... . ..+.+..| .....+++-.++
T Consensus 102 G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~--p-~~g~----~--------~~l~~~~g--~~~a~~~~l~g~ 162 (195)
T cd06558 102 GAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLV--P-GGGG----T--------QRLPRLVG--PARARELLLTGR 162 (195)
T ss_pred CeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCC--C-CCcH----H--------HHHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999998876654422 0 0000 0 11111112 233334444578
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||++.||||++++.
T Consensus 163 ~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 163 RISAEEALELGLVDEVVPD 181 (195)
T ss_pred ccCHHHHHHcCCCCeecCh
Confidence 8999999999999999875
No 36
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.89 E-value=7.6e-08 Score=85.94 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=94.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH---------------HHHHHHHHhhCCceEEEEeccc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV---------------LAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag---------------~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||++.+.|.|
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 110 (222)
T PRK05869 31 LTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYA 110 (222)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEe
Confidence 777888899999998887766665554311 334554321 2456678888999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
..+|.-++++||. |++.++++|.+.....|.. -+..-. ..+.+..| .....+++-.+.+++
T Consensus 111 ~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~ig--~~~a~~l~ltg~~~~ 171 (222)
T PRK05869 111 LGAGLTLALAADW--RVSGDNVKFGATEILAGLA---PSGDGM------------ARLTRAAG--PSRAKELVFSGRFFD 171 (222)
T ss_pred ecHHHHHHHhCCE--EEecCCCEEcCchhccCCC---CCccHH------------HHHHHHhC--HHHHHHHHHcCCCcC
Confidence 9999999999999 9999999887654433321 110000 00111122 233344444567899
Q ss_pred HHHHHHcCCceeeccC
Q 024202 254 AAEAMEFGLIDGILET 269 (271)
Q Consensus 254 a~EAle~GLID~I~~~ 269 (271)
++||+++||||+|.+.
T Consensus 172 a~eA~~~Glv~~vv~~ 187 (222)
T PRK05869 172 AEEALALGLIDEMVAP 187 (222)
T ss_pred HHHHHHCCCCCEeeCc
Confidence 9999999999999865
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=6.1e-08 Score=87.86 Aligned_cols=138 Identities=18% Similarity=0.192 Sum_probs=94.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHH--------------HHHHHHHHHhhCCceEEEEecccc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGVAA 174 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~----INSPGGsV~a--------------g~~Iyd~I~~~~~pV~tvv~G~AA 174 (271)
++.++.+.+.+.+..++.++..+.|+|. .=|.|+++.. ...+++.|..+++|+++.+.|.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 108 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV 108 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 7888899999999998877666666553 1244555432 235666778889999999999999
Q ss_pred hHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccH
Q 024202 175 SQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254 (271)
Q Consensus 175 Saa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa 254 (271)
.+|..++++||. |++.++++|.+.....|..- +.... .. +.+..| .....+++-.+..+++
T Consensus 109 GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p---~~g~~----~~--------l~~~~G--~~~a~~l~l~g~~~~a 169 (259)
T PRK06688 109 GVGVSLALACDL--VYASESAKFSLPFAKLGLCP---DAGGS----AL--------LPRLIG--RARAAEMLLLGEPLSA 169 (259)
T ss_pred cHHHHHHHhCCE--EEecCCCEecCchhhcCCCC---Ccchh----hH--------HHHHhh--HHHHHHHHHhCCccCH
Confidence 999999999999 99999999877654443211 10000 00 111112 1222333334677999
Q ss_pred HHHHHcCCceeeccC
Q 024202 255 AEAMEFGLIDGILET 269 (271)
Q Consensus 255 ~EAle~GLID~I~~~ 269 (271)
+||+++||||+|.+.
T Consensus 170 ~eA~~~Glv~~v~~~ 184 (259)
T PRK06688 170 EEALRIGLVNRVVPA 184 (259)
T ss_pred HHHHHcCCcceecCH
Confidence 999999999999864
No 38
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.86 E-value=9.4e-08 Score=87.83 Aligned_cols=139 Identities=18% Similarity=0.276 Sum_probs=94.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhhCCceEEEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV-------------------LAIYDCMSWIKPKVGTVC 169 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag-------------------~~Iyd~I~~~~~pV~tvv 169 (271)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||++.+
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 120 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV 120 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 677888889999988876655555444211 345555421 245667788899999999
Q ss_pred ecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 170 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 170 ~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
.|.|..+|.-++++||. |++.++++|.+.....|... -+.... . .+.+..|. ....+++-.+
T Consensus 121 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~~----~--------~l~~~vG~--~~a~~l~ltg 182 (277)
T PRK08258 121 DGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAG--ADMGAC----A--------LLPRIIGQ--GRASELLYTG 182 (277)
T ss_pred CCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCC--CCchHH----H--------HHHHHhCH--HHHHHHHHcC
Confidence 99999999999999999 99999999987666544321 010000 0 01111122 2233444446
Q ss_pred ccccHHHHHHcCCceeeccC
Q 024202 250 RFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~~~ 269 (271)
..++++||+++||||+|.+.
T Consensus 183 ~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 183 RSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred CCCCHHHHHHcCCCcEecCH
Confidence 78999999999999999764
No 39
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.85 E-value=3.8e-08 Score=86.93 Aligned_cols=151 Identities=20% Similarity=0.172 Sum_probs=103.1
Q ss_pred EEEcceeChhHHHHHHHHHHHHhccCCCCCEE-EEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccchHHHHHHhcCC
Q 024202 107 IFIGQPINSMVAQRAISQLVTLATIDEDADIL-MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 185 (271)
Q Consensus 107 I~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~-L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agd 185 (271)
+.+.+++-+.-+......+.. ..+...++ +.+|||||++..++++-..|+..+-.+..--..+|+|++.+++++|.
T Consensus 79 VvVse~~a~~da~sal~~lir---~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGv 155 (245)
T COG3904 79 VVVSEPGANVDAASALGRLIR---KAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGV 155 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHh---ccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcce
Confidence 446666655444444444443 22333344 78999999999999999999998877766666799999999999999
Q ss_pred cCcEEeccCcEEeeecCCCCCCCCchh-hHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHhh----CCccccHHHHHH
Q 024202 186 KGMRYAMPNARIMLNQPQSGSGGHVED-VKRQVNEAVI-SRHKIDRMYAAFTGQPIEKVQQYTE----RDRFLSAAEAME 259 (271)
Q Consensus 186 kg~R~a~PnS~imiHqp~~g~~G~~~d-i~~~~~el~~-~~~~i~~iya~~tG~~~e~i~~~~~----~~~~lsa~EAle 259 (271)
. |++.|.+.+++||+... |..+. ...+++...+ .... ...|-.-.|.++..++.+.+ +=++++.+|..+
T Consensus 156 r--Rvve~~ayiGVHq~~~~--g~~~r~~~~~a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir~l~~kem~~ 230 (245)
T COG3904 156 R--RVVEDFAYIGVHQITTT--GRRERIVNGKAKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIRQLGLKEMTA 230 (245)
T ss_pred e--eeecccceeeeeecccc--CCccccCcHhhhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhhhhhHHHHhh
Confidence 9 99999999999999764 22210 1111121111 1111 22366667888777765544 337899999999
Q ss_pred cCCcee
Q 024202 260 FGLIDG 265 (271)
Q Consensus 260 ~GLID~ 265 (271)
+.|+.+
T Consensus 231 ~~L~t~ 236 (245)
T COG3904 231 MKLVTS 236 (245)
T ss_pred hccccc
Confidence 999864
No 40
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.85 E-value=7.9e-08 Score=87.35 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=98.2
Q ss_pred EEEcce----eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH-----------------HHHHHHHHhh
Q 024202 107 IFIGQP----INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV-----------------LAIYDCMSWI 161 (271)
Q Consensus 107 I~l~g~----Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag-----------------~~Iyd~I~~~ 161 (271)
|.|+.| ++.++...+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..+
T Consensus 17 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (257)
T PRK06495 17 VTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIREC 96 (257)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhC
Confidence 345554 788888999999998887665555554311 334444321 2345667788
Q ss_pred CCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 024202 162 KPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEK 241 (271)
Q Consensus 162 ~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~ 241 (271)
++||++.+.|.|..+|.-++++||. |++.++++|.+.....|..|...- +.+..| ...
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~~------------------l~~~~g--~~~ 154 (257)
T PRK06495 97 AKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGGKH------------------AMRLFG--HSL 154 (257)
T ss_pred CCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccHHH------------------HHHHhC--HHH
Confidence 8999999999999999999999999 999999998776555444321100 112222 333
Q ss_pred HHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 242 VQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 242 i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
..+++-.+..++++||+++||||+|.+.
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~ 182 (257)
T PRK06495 155 TRRMMLTGYRVPAAELYRRGVIEACLPP 182 (257)
T ss_pred HHHHHHcCCeeCHHHHHHcCCcceecCH
Confidence 4455555788999999999999999864
No 41
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.83 E-value=1.2e-07 Score=86.41 Aligned_cols=138 Identities=12% Similarity=0.060 Sum_probs=92.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE-----EeCCCCcHHH--------------HHHHHHHHHhhCCceEEEEeccc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMY-----LNCPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~-----INSPGGsV~a--------------g~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
++.++.+.+.+.|..++.++..+.|+|. .=|.|+++.. ...++..|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (261)
T PRK03580 26 IDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYA 105 (261)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECCee
Confidence 6778888999999988876655555553 1245555542 12345667788899999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
..+|.-++++||. |++.++++|.+-....|.. -+.... .. +.+..| .....+++-.+..++
T Consensus 106 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~---p~~g~~----~~--------l~~~vg--~~~a~~l~l~g~~~~ 166 (261)
T PRK03580 106 FGGGFELALAADF--IVCADNASFALPEAKLGIV---PDSGGV----LR--------LPKRLP--PAIANEMVMTGRRMD 166 (261)
T ss_pred ehHHHHHHHHCCE--EEecCCCEEeCcccccCcC---CCccHH----HH--------HHHHhC--HHHHHHHHHhCCccC
Confidence 9999999999999 9999999886544333221 111100 00 111112 233344444467899
Q ss_pred HHHHHHcCCceeeccC
Q 024202 254 AAEAMEFGLIDGILET 269 (271)
Q Consensus 254 a~EAle~GLID~I~~~ 269 (271)
++||+++||||+|.+.
T Consensus 167 a~eA~~~Glv~~vv~~ 182 (261)
T PRK03580 167 AEEALRWGIVNRVVPQ 182 (261)
T ss_pred HHHHHHcCCCcEecCH
Confidence 9999999999999864
No 42
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.83 E-value=1.3e-07 Score=85.98 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=93.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH------------------HHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag------------------~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.+.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 106 (260)
T PRK07511 27 LHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVE 106 (260)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 77888899999999888766555555421 1344554321 2355667778899999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|..++++||. |++.++++|.+.....|.. -+.... .. +.+.. ......+++-.+.
T Consensus 107 G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~~~v--g~~~a~~l~ltg~ 167 (260)
T PRK07511 107 GAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLT---PDGGGS----WF--------LARAL--PRQLATELLLEGK 167 (260)
T ss_pred CeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcC---CCchHH----HH--------HHHHh--CHHHHHHHHHhCC
Confidence 9999999999999999 9999999987755443322 110000 00 11111 2233344444567
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||++.||||+|.+.
T Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (260)
T PRK07511 168 PISAERLHALGVVNRLAEP 186 (260)
T ss_pred CCCHHHHHHcCCccEeeCc
Confidence 8999999999999999864
No 43
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=1.3e-07 Score=86.08 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=95.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHH---------------HHHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-----NSPGGsV~a---------------g~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 110 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGW 110 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 78888999999999988766556555422 134455432 1235666778889999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|..+|.-++++||. |++.++++|.+-....|. +.... . ..+.+..| .....+++-.+..+
T Consensus 111 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~---p~~~~-~------------~~l~~~iG--~~~a~~l~l~g~~~ 170 (256)
T PRK06143 111 CLGGGLELAAACDL--RIAAHDAQFGMPEVRVGI---PSVIH-A------------ALLPRLIG--WARTRWLLLTGETI 170 (256)
T ss_pred EeehhHHHHHhCCE--EEecCCCEEeCCccccCC---CCccH-H------------HHHHHhcC--HHHHHHHHHcCCcC
Confidence 99999999999999 999999988764443332 11100 0 01222223 23344555557889
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
+++||+++||||+|+++
T Consensus 171 ~a~eA~~~Glv~~vv~~ 187 (256)
T PRK06143 171 DAAQALAWGLVDRVVPL 187 (256)
T ss_pred CHHHHHHCCCcCeecCH
Confidence 99999999999999864
No 44
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.80 E-value=1.8e-07 Score=84.87 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=95.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH-------------HHHHHHHHHhhCCceEEEEecccch
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGVAAS 175 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~a-------------g~~Iyd~I~~~~~pV~tvv~G~AAS 175 (271)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG 105 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence 67888889999999888766555555421 144555532 1235667888899999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~ 255 (271)
+|.-++++||. |++.++++|.+.....|.. .+..-. ..+.+..| .....+++-.+..|+++
T Consensus 106 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~ig--~~~a~~l~l~g~~~~a~ 166 (255)
T PRK09674 106 AGCELALLCDI--VIAGENARFGLPEITLGIM---PGAGGT------------QRLIRSVG--KSLASQMVLTGESITAQ 166 (255)
T ss_pred HHHHHHHhCCE--EEecCCCEEeCchhhcCCC---CCccHH------------HHHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999999 9999999987755444321 110000 01112222 23334445456789999
Q ss_pred HHHHcCCceeeccC
Q 024202 256 EAMEFGLIDGILET 269 (271)
Q Consensus 256 EAle~GLID~I~~~ 269 (271)
||+++||||+|.+.
T Consensus 167 eA~~~Glv~~vv~~ 180 (255)
T PRK09674 167 QAQQAGLVSEVFPP 180 (255)
T ss_pred HHHHcCCCcEecCh
Confidence 99999999999865
No 45
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.79 E-value=2.5e-07 Score=84.46 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=95.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH-------------HHHHHHHHHhhCCceEEEEecccch
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGVAAS 175 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a-------------g~~Iyd~I~~~~~pV~tvv~G~AAS 175 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 107 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT 107 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 788889999999999887665565555321 45666542 1346677888899999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~ 255 (271)
+|.-++++||. |++.++++|.+-....|. .-+.... ..+.+..| .....+++-.+..++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~r~vG--~~~a~~l~ltg~~~~a~ 168 (258)
T PRK06190 108 GGLELALACDI--LIASERARFADTHARVGI---LPGWGLS------------VRLPQKVG--IGRARRMSLTGDFLDAA 168 (258)
T ss_pred HHHHHHHhCCE--EEEeCCCEEECcccccCc---CCCccHH------------HHHHHHhC--HHHHHHHHHhCCccCHH
Confidence 99999999999 999999998754433322 1111000 01111222 23334444456789999
Q ss_pred HHHHcCCceeeccC
Q 024202 256 EAMEFGLIDGILET 269 (271)
Q Consensus 256 EAle~GLID~I~~~ 269 (271)
||+++||||++.+.
T Consensus 169 eA~~~GLv~~vv~~ 182 (258)
T PRK06190 169 DALRAGLVTEVVPH 182 (258)
T ss_pred HHHHcCCCeEecCH
Confidence 99999999999864
No 46
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.78 E-value=1.7e-07 Score=85.48 Aligned_cols=137 Identities=12% Similarity=0.155 Sum_probs=92.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe------CCCCcHHHH--------------HHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYSV--------------LAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN------SPGGsV~ag--------------~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++.+.+.+.+..++.++ .+.|+|.=+ |-|+++... ..+++.|..+++||++.+.|.
T Consensus 28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~ 106 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS 106 (261)
T ss_pred CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence 68888899999999888654 655554321 345555321 235666788889999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|..+|.-++++||. |++.++++|.+-....|.. -+..-. . .+.+..| .....+++-.+..+
T Consensus 107 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---~~~g~~----~--------~l~~~vg--~~~a~~l~l~g~~~ 167 (261)
T PRK11423 107 VWGGAFELIMSCDL--IIAASTSTFAMTPANLGVP---YNLSGI----L--------NFTNDAG--FHIVKEMFFTASPI 167 (261)
T ss_pred EechHHHHHHhCCE--EEecCCCEecCchhhcCCC---CCccHH----H--------HHHHHhH--HHHHHHHHHcCCCc
Confidence 99999999999999 9999999886654433321 110000 0 1111112 23334444456789
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
+++||+++||||+|.++
T Consensus 168 ~a~eA~~~GLv~~vv~~ 184 (261)
T PRK11423 168 TAQRALAVGILNHVVEV 184 (261)
T ss_pred CHHHHHHcCCcCcccCH
Confidence 99999999999999864
No 47
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=2.8e-07 Score=83.95 Aligned_cols=138 Identities=15% Similarity=0.119 Sum_probs=93.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH-------------HHHHHHHHHhhCCceEEEEecccch
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGVAAS 175 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~a-------------g~~Iyd~I~~~~~pV~tvv~G~AAS 175 (271)
++.++...+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 78888899999999888766555555431 134455432 1235566778889999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~ 255 (271)
+|.-++++||. |++.++++|.+-....|.. -+.... ..+.+..| .....+++-.+..++++
T Consensus 112 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG--~~~a~~l~l~g~~~~a~ 172 (261)
T PRK08138 112 GGCELAMHADI--IVAGESASFGQPEIKVGLM---PGAGGT------------QRLVRAVG--KFKAMRMALTGCMVPAP 172 (261)
T ss_pred HHHHHHHhCCE--EEecCCCEeeCcccccccC---CCCcHH------------HHHHHHhC--HHHHHHHHHcCCCCCHH
Confidence 99999999999 9999999887644433321 110000 00111222 22333444446789999
Q ss_pred HHHHcCCceeeccC
Q 024202 256 EAMEFGLIDGILET 269 (271)
Q Consensus 256 EAle~GLID~I~~~ 269 (271)
||+++||||+|.+.
T Consensus 173 eA~~~Glv~~vv~~ 186 (261)
T PRK08138 173 EALAIGLVSEVVED 186 (261)
T ss_pred HHHHCCCCcEecCc
Confidence 99999999999864
No 48
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.76 E-value=2.5e-07 Score=84.08 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=93.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHHH--------------HHHHHHHHhhCCceEEEEeccc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYSV--------------LAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-----NSPGGsV~ag--------------~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++..- ..+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67788888999998888766556555532 1345665431 2356678888999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
..+|.-++++||. |++.++++|.+-.+..|.. +..... ..+.+..|. ....+++-.+..++
T Consensus 106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~--~~~~~~-------------~~l~~~vG~--~~A~~lll~g~~~~ 166 (256)
T TIGR03210 106 IGGGNVLVTICDL--TIASEKAQFGQVGPKVGSV--DPGYGT-------------ALLARVVGE--KKAREIWYLCRRYT 166 (256)
T ss_pred ehhhHHHHHhCCE--EEEeCCCEEeccccccccc--CCccHH-------------HHHHHHhCH--HHHHHHHHhCCCcC
Confidence 9999999999999 9999999987654443321 000000 011122232 22233443467899
Q ss_pred HHHHHHcCCceeeccC
Q 024202 254 AAEAMEFGLIDGILET 269 (271)
Q Consensus 254 a~EAle~GLID~I~~~ 269 (271)
++||+++||||+|++.
T Consensus 167 a~eA~~~Glv~~vv~~ 182 (256)
T TIGR03210 167 AQEALAMGLVNAVVPH 182 (256)
T ss_pred HHHHHHcCCceeeeCH
Confidence 9999999999999864
No 49
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=2e-07 Score=85.30 Aligned_cols=138 Identities=12% Similarity=0.125 Sum_probs=92.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH-------------------------HHHHHHHHhhCC
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV-------------------------LAIYDCMSWIKP 163 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag-------------------------~~Iyd~I~~~~~ 163 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++... ..+++.|..+++
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 109 (272)
T PRK06210 30 WTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRK 109 (272)
T ss_pred CCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCC
Confidence 788888899999998877655555554321 233444321 122456778899
Q ss_pred ceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 024202 164 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243 (271)
Q Consensus 164 pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~ 243 (271)
||++.+.|.|..+|.-|+++||. |++.++++|.+..+..|.. .+..... . +.+.. ......
T Consensus 110 PvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~~~--------~----l~~~i--g~~~a~ 170 (272)
T PRK06210 110 PVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLI---AEHGISW--------I----LPRLV--GHANAL 170 (272)
T ss_pred CEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCC---CCCchhh--------h----hHhhh--CHHHHH
Confidence 99999999999999999999999 9999999998765544321 0100000 0 00111 223344
Q ss_pred HHhhCCccccHHHHHHcCCceeeccC
Q 024202 244 QYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 244 ~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
+++=.+..++++||+++||||+|.++
T Consensus 171 ~l~ltg~~~~a~eA~~~Glv~~vv~~ 196 (272)
T PRK06210 171 DLLLSARTFYAEEALRLGLVNRVVPP 196 (272)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCH
Confidence 54445677899999999999999754
No 50
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.76 E-value=3.3e-07 Score=83.03 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=95.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------HHHHHHHHhhCCceEEEEecccchH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVAASQ 176 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag------------~~Iyd~I~~~~~pV~tvv~G~AASa 176 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..++..|..+++||++.+.|.|..+
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGG 108 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceech
Confidence 677888899998988887665565555311 345654421 2567778889999999999999999
Q ss_pred HHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHH
Q 024202 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256 (271)
Q Consensus 177 a~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~E 256 (271)
|..++++||. |++.++++|.+.....|.. .+..-. ..+.+..| .....+++-.+.-++++|
T Consensus 109 G~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~~g--~~~a~~llltg~~~~a~e 169 (249)
T PRK07110 109 GLVLGLYADI--VVLSRESVYTANFMKYGFT---PGMGAT------------AILPEKLG--LALGQEMLLTARYYRGAE 169 (249)
T ss_pred HHHHHHhCCE--EEEeCCCEecCchhccCCC---CCchHH------------HHHHHHhC--HHHHHHHHHcCCccCHHH
Confidence 9999999999 9999999886544333321 111100 00111222 333455555577899999
Q ss_pred HHHcCCceeeccC
Q 024202 257 AMEFGLIDGILET 269 (271)
Q Consensus 257 Ale~GLID~I~~~ 269 (271)
|+++||||+|.+.
T Consensus 170 A~~~Glv~~vv~~ 182 (249)
T PRK07110 170 LKKRGVPFPVLPR 182 (249)
T ss_pred HHHcCCCeEEeCh
Confidence 9999999999864
No 51
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.76 E-value=1.8e-07 Score=83.92 Aligned_cols=137 Identities=14% Similarity=0.137 Sum_probs=93.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCC------CCcHH---------------HHHHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIY---------------SVLAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSP------GGsV~---------------ag~~Iyd~I~~~~~pV~tvv~G 171 (271)
+|.++.+.+.+.|..++.++..+ .+.|.+. |+++. ....++..|..+++|+++.+.|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 78889999999999998876656 3334433 44442 3456788888999999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
.|..+|.-++++||. |++.+++.|.+.....|..-..--.. . +.+..|. ....+++-.+..
T Consensus 100 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~-------~--------l~r~~g~--~~a~~l~l~g~~ 160 (245)
T PF00378_consen 100 HAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTF-------R--------LPRLIGP--SRARELLLTGEP 160 (245)
T ss_dssp EEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHH-------H--------HHHHHHH--HHHHHHHHHTCE
T ss_pred cccccccccccccce--EEeecccceeeeecccCccccccccc-------c--------cceeeec--cccccccccccc
Confidence 999999999999999 99999999766554433211110100 0 1111111 111223223567
Q ss_pred ccHHHHHHcCCceeeccCC
Q 024202 252 LSAAEAMEFGLIDGILETE 270 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~~ 270 (271)
++++||+++||||+|++++
T Consensus 161 ~~a~eA~~~Glv~~v~~~~ 179 (245)
T PF00378_consen 161 ISAEEALELGLVDEVVPDE 179 (245)
T ss_dssp EEHHHHHHTTSSSEEESGG
T ss_pred chhHHHHhhcceeEEcCch
Confidence 8999999999999998753
No 52
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.76 E-value=2.2e-07 Score=84.42 Aligned_cols=136 Identities=16% Similarity=0.189 Sum_probs=92.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------CcHHH---------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLNCPG-------GSIYS---------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPG-------GsV~a---------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++...+.+.+..++.++..+.|+| .+.| +++.. ...+++.|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYAVIL--TGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEE--EcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677888889888888877655554443 3433 44321 12456678888999999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-++++||. |++.++++|.+.....|.. .+.... ..+.+..|. ....+++-.+.
T Consensus 106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG~--~~a~~l~l~g~ 166 (260)
T PRK05809 106 GFALGGGCELSMACDI--RIASEKAKFGQPEVGLGIT---PGFGGT------------QRLARIVGP--GKAKELIYTGD 166 (260)
T ss_pred CeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCCC---CCccHH------------HHHHHHhCH--HHHHHHHHhCC
Confidence 9999999999999999 9999999987654443321 111100 001111221 22334444467
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|.+.
T Consensus 167 ~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK05809 167 MINAEEALRIGLVNKVVEP 185 (260)
T ss_pred CCCHHHHHHcCCCCcccCh
Confidence 8999999999999999764
No 53
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=2.6e-07 Score=84.19 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=92.0
Q ss_pred eChhHHHHHHHHHHHHhccCC-CCCEEEEEe----CCCCcHHH--------------H-------HHHHHHHHhhCCceE
Q 024202 113 INSMVAQRAISQLVTLATIDE-DADILMYLN----CPGGSIYS--------------V-------LAIYDCMSWIKPKVG 166 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~-~~~I~L~IN----SPGGsV~a--------------g-------~~Iyd~I~~~~~pV~ 166 (271)
++.++.+.+.+.|..++.+++ .+.|+|.=. |.|+++.. . ..++..|..+++||+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 107 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIV 107 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 678888899999988876543 454554321 34455432 1 235566778899999
Q ss_pred EEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 024202 167 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 246 (271)
Q Consensus 167 tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~ 246 (271)
+.+.|.|..+|.-++++||. |++.+++.|.+..+..|.. -+.... . .+ .+..| .....+++
T Consensus 108 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~---p~~g~~--~--~l--------~~~vg--~~~a~~l~ 168 (266)
T PRK05981 108 TAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLV---PDGGST--W--LL--------PRLVG--KARAMELS 168 (266)
T ss_pred EEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCC---CCccHH--H--HH--------HHHhH--HHHHHHHH
Confidence 99999999999999999999 9999999987665544321 111000 0 01 11111 12223334
Q ss_pred hCCccccHHHHHHcCCceeeccC
Q 024202 247 ERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 247 ~~~~~lsa~EAle~GLID~I~~~ 269 (271)
-.+..|+++||+++||||+|.+.
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~ 191 (266)
T PRK05981 169 LLGEKLPAETALQWGLVNRVVDD 191 (266)
T ss_pred HhCCCcCHHHHHHcCCceEeeCH
Confidence 34678999999999999999865
No 54
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=3.7e-07 Score=83.05 Aligned_cols=138 Identities=13% Similarity=0.104 Sum_probs=92.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH---------------HHHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~a---------------g~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++...+.+.+..++.++..+.|+|.=. |.|+++.. ...+++.|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 105 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGY 105 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 778888899999988887665555554321 33455432 1235566778899999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|..+|.-++++||. |++.++++|.+.....|.. -+.... ..+.+..|. ....+++=.+..+
T Consensus 106 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~iG~--~~a~~l~l~g~~~ 166 (258)
T PRK09076 106 AMGGGLECALACDI--RIAEEQAQMALPEASVGLL---PCAGGT------------QNLPWLVGE--GWAKRMILCGERV 166 (258)
T ss_pred EecHHHHHHHhCCE--EEecCCCEeeCcccccCCC---CCccHH------------HHHHHHhCH--HHHHHHHHcCCcC
Confidence 99999999999999 9999999987654433321 110000 001111222 2223333346789
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
+++||+++||||+|++.
T Consensus 167 ~a~eA~~~Glv~~vv~~ 183 (258)
T PRK09076 167 DAATALRIGLVEEVVEK 183 (258)
T ss_pred CHHHHHHCCCCceecCc
Confidence 99999999999999865
No 55
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=3.5e-07 Score=82.85 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=93.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH--------------HHHHHHHHHhhCCceEEEEecccc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGVAA 174 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~a--------------g~~Iyd~I~~~~~pV~tvv~G~AA 174 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|.|.
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (251)
T PRK06023 30 ITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAI 109 (251)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCcee
Confidence 78888899999999888766555555421 134455431 124556788889999999999999
Q ss_pred hHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccH
Q 024202 175 SQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254 (271)
Q Consensus 175 Saa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa 254 (271)
.+|.-++++||. |++.++++|.+.....|.. .+.... . .+.+..| .....+++-.++.+++
T Consensus 110 GgG~~la~acD~--ria~~~a~f~~pe~~~Gl~---p~~g~~--~----------~l~~~~g--~~~a~~l~l~g~~~~a 170 (251)
T PRK06023 110 GIGTTIHLHCDL--TFASPRSLFRTPFVDLALV---PEAGSS--L----------LAPRLMG--HQRAFALLALGEGFSA 170 (251)
T ss_pred cHHHHHHHhCCE--EEEeCCCEecCcccccCCC---CCchHH--H----------HHHHHHh--HHHHHHHHHhCCCCCH
Confidence 999999999999 9999999997655443321 111000 0 0111112 2223334434678999
Q ss_pred HHHHHcCCceeeccC
Q 024202 255 AEAMEFGLIDGILET 269 (271)
Q Consensus 255 ~EAle~GLID~I~~~ 269 (271)
+||+++||||+|.+.
T Consensus 171 ~eA~~~Glv~~vv~~ 185 (251)
T PRK06023 171 EAAQEAGLIWKIVDE 185 (251)
T ss_pred HHHHHcCCcceeeCH
Confidence 999999999999864
No 56
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=3.1e-07 Score=83.28 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=93.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH----------------HHHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~a----------------g~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~ 104 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGA 104 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 67788889999998888766555555431 144566532 1235567778899999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|..+|.-++++||. |++.++++|.+-....|.. -+..-. .. +.+..| .....+++-.+..+
T Consensus 105 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~~~vG--~~~a~~l~l~g~~~ 165 (257)
T PRK07658 105 ALGGGLELAMSCHI--RFATESAKLGLPELNLGLI---PGFAGT----QR--------LPRYVG--KAKALEMMLTSEPI 165 (257)
T ss_pred eeeHHHHHHHhCCE--EEecCCCcccCcccccCCC---CCCcHH----HH--------HHHHhC--HHHHHHHHHcCCCc
Confidence 99999999999999 9999999887644333321 111000 00 111122 22234444456789
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
+++||+++||||+|.+.
T Consensus 166 ~a~eA~~~Glv~~vv~~ 182 (257)
T PRK07658 166 TGAEALKWGLVNGVFPE 182 (257)
T ss_pred CHHHHHHcCCcCeecCh
Confidence 99999999999999864
No 57
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.73 E-value=3.1e-07 Score=84.36 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=91.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH--------------------------HHHHHHHHhhC
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV--------------------------LAIYDCMSWIK 162 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag--------------------------~~Iyd~I~~~~ 162 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|-|+++... ..+++.|..++
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (275)
T PLN02664 32 LSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCR 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 78888899999999888766555444321 1334544321 13455677889
Q ss_pred CceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 024202 163 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV 242 (271)
Q Consensus 163 ~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i 242 (271)
+||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. -+.... .. +.+..| ....
T Consensus 112 kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~~~vG--~~~A 172 (275)
T PLN02664 112 KPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAIT---ADLGTL----QR--------LPSIVG--YGNA 172 (275)
T ss_pred CCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCCC---CCccHH----HH--------HHHHhC--HHHH
Confidence 999999999999999999999999 9999999987644433321 111100 00 111122 2223
Q ss_pred HHHhhCCccccHHHHHHcCCceeeccC
Q 024202 243 QQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 243 ~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
.+++=.+..|+++||+++||||+|+++
T Consensus 173 ~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 173 MELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 344434678999999999999999863
No 58
>PLN02600 enoyl-CoA hydratase
Probab=98.73 E-value=4.1e-07 Score=82.45 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=92.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHHH---------------HHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYSV---------------LAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-----NSPGGsV~ag---------------~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++..- ..++..|..+++||++.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 68888899999999888766555555531 1345555321 224556777889999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|..+|.-++++||. |++.++++|.+-....|.. .+.... .. +.+..| .....+++-.+..|
T Consensus 99 a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~~~~G--~~~a~~l~ltg~~~ 159 (251)
T PLN02600 99 ALGGGLELALSCDL--RICGEEAVFGLPETGLAII---PGAGGT----QR--------LPRLVG--RSRAKELIFTGRRI 159 (251)
T ss_pred ecchhHHHHHhCCE--EEeeCCCEEeCcccccCcC---CCchHH----HH--------HHHHhC--HHHHHHHHHhCCcc
Confidence 99999999999999 9999999987643333221 111000 00 111112 22233444446789
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
+++||+++||||+|++.
T Consensus 160 ~a~eA~~~Glv~~vv~~ 176 (251)
T PLN02600 160 GAREAASMGLVNYCVPA 176 (251)
T ss_pred CHHHHHHcCCCcEeeCh
Confidence 99999999999999764
No 59
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=2.6e-07 Score=83.92 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=92.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH-------------------HHHHHHHHhhCCceEEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV-------------------LAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~ag-------------------~~Iyd~I~~~~~pV~tv 168 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++..- ..+++.|..+++||++.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 778888999999998887665565555321 234444310 12455677788999999
Q ss_pred EecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Q 024202 169 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 248 (271)
Q Consensus 169 v~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~ 248 (271)
+.|.|..+|.-++++||. |++.++++|.+-....|.. -+.... ..+.+..| .....+++-.
T Consensus 107 v~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG--~~~a~~l~l~ 167 (260)
T PRK05980 107 VNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGMP---PTFGGT------------QRLPRLAG--RKRALELLLT 167 (260)
T ss_pred EcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCCC---CCchHh------------hHHHhhcC--HHHHHHHHHc
Confidence 999999999999999999 9999999887644333321 110000 00111122 2333444445
Q ss_pred CccccHHHHHHcCCceeeccC
Q 024202 249 DRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 249 ~~~lsa~EAle~GLID~I~~~ 269 (271)
+..++++||+++||||+|++.
T Consensus 168 g~~~~a~eA~~~Glv~~vv~~ 188 (260)
T PRK05980 168 GDAFSAERALEIGLVNAVVPH 188 (260)
T ss_pred CCccCHHHHHHcCCCCcccCH
Confidence 678999999999999999864
No 60
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=3.1e-07 Score=85.25 Aligned_cols=138 Identities=15% Similarity=0.145 Sum_probs=92.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH--------------------------------HHHHH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV--------------------------------LAIYD 156 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag--------------------------------~~Iyd 156 (271)
++.++...+.+.|..++.++..+.|+|.=+ |.|+++... ..++.
T Consensus 28 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (296)
T PRK08260 28 FTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTL 107 (296)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 678888899999988887665555444211 344544321 12456
Q ss_pred HHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 024202 157 CMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236 (271)
Q Consensus 157 ~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG 236 (271)
.|..+++||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. -+.... .. +.+..|
T Consensus 108 ~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~--------l~r~vG 170 (296)
T PRK08260 108 RIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIV---PEAASS----WF--------LPRLVG 170 (296)
T ss_pred HHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcC---CCcchh----hh--------HHHhhC
Confidence 677888999999999999999999999999 9999999997765544321 110000 00 111112
Q ss_pred CCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 237 ~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
.....+++-.+..++++||+++||||+|++.
T Consensus 171 --~~~A~~llltg~~~~a~eA~~~GLv~~vv~~ 201 (296)
T PRK08260 171 --LQTALEWVYSGRVFDAQEALDGGLVRSVHPP 201 (296)
T ss_pred --HHHHHHHHHcCCccCHHHHHHCCCceeecCH
Confidence 2333444445678999999999999999864
No 61
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.72 E-value=3.2e-07 Score=83.39 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=92.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHHH----------------------HHHHHHHHhhCCceE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSV----------------------LAIYDCMSWIKPKVG 166 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~----INSPGGsV~ag----------------------~~Iyd~I~~~~~pV~ 166 (271)
++.++.+.+.+.|..++.++..+.|+|. .=|.|+++... ..++..|+.+++||+
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvI 106 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVI 106 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEE
Confidence 7888899999999998876655555442 11445554321 113344677889999
Q ss_pred EEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 024202 167 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 246 (271)
Q Consensus 167 tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~ 246 (271)
+.+.|.|..+|.-++++||. |++.++++|.+.....|.. -+..-. ..+.+..| .....+++
T Consensus 107 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~~g--~~~a~~l~ 167 (262)
T PRK07509 107 AALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLV---PDMAGT------------VSLRGLVR--KDVARELT 167 (262)
T ss_pred EEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCC---CCchHH------------HHHHHHhC--HHHHHHHH
Confidence 99999999999999999999 9999999987765444321 111000 00111112 23334444
Q ss_pred hCCccccHHHHHHcCCceeecc
Q 024202 247 ERDRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 247 ~~~~~lsa~EAle~GLID~I~~ 268 (271)
-.+..++++||+++||||+|.+
T Consensus 168 ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 168 YTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred HcCCCcCHHHHHHcCChhhhhc
Confidence 4567899999999999999975
No 62
>PLN02888 enoyl-CoA hydratase
Probab=98.72 E-value=4.7e-07 Score=82.83 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=92.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------HHHHHHHHhhCCceEEEEecccchH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVAASQ 176 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag------------~~Iyd~I~~~~~pV~tvv~G~AASa 176 (271)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++... ..++..|..+++||++.+.|.|..+
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 778888999999998887665555554311 334555321 2345567788899999999999999
Q ss_pred HHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHH
Q 024202 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256 (271)
Q Consensus 177 a~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~E 256 (271)
|..++++||. |++.+++.|.+-....|.. -+.... ..+.+..| .....+++-.+..++++|
T Consensus 114 G~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG--~~~a~~l~ltg~~~~a~e 174 (265)
T PLN02888 114 GFEIALACDI--LVASRGAKFIDTHAKFGIF---PSWGLS------------QKLSRIIG--ANRAREVSLTAMPLTAET 174 (265)
T ss_pred HHHHHHhCCE--EEecCCCEecCccccccCC---CCccHh------------hHHHHHhC--HHHHHHHHHhCCccCHHH
Confidence 9999999999 9999999886643333221 111000 01111222 223334444467899999
Q ss_pred HHHcCCceeeccC
Q 024202 257 AMEFGLIDGILET 269 (271)
Q Consensus 257 Ale~GLID~I~~~ 269 (271)
|+++||||+|++.
T Consensus 175 A~~~Glv~~vv~~ 187 (265)
T PLN02888 175 AERWGLVNHVVEE 187 (265)
T ss_pred HHHcCCccEeeCh
Confidence 9999999999864
No 63
>PLN02921 naphthoate synthase
Probab=98.72 E-value=4.1e-07 Score=85.95 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=94.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH----------------HHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~ag----------------~~Iyd~I~~~~~pV~tvv~G 171 (271)
++.++...+.+.|..++.++..+.|+|.=+ |.||++... ..++..|..+++||++.+.|
T Consensus 91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG 170 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG 170 (327)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 788899999999998887655544443211 345554320 22455677888999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
.|..+|.-|+++||. |++.+++.|.+..+..|... ...... . +.+..| .....+++-.+..
T Consensus 171 ~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p--~~gg~~--~-----------L~rliG--~~~A~ellltG~~ 231 (327)
T PLN02921 171 YAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFD--AGYGSS--I-----------MARLVG--QKKAREMWFLARF 231 (327)
T ss_pred EEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCC--CccHHH--H-----------HHHHhC--HHHHHHHHHcCCc
Confidence 999999999999999 99999999988666544321 000000 0 111122 2333444445778
Q ss_pred ccHHHHHHcCCceeeccC
Q 024202 252 LSAAEAMEFGLIDGILET 269 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~ 269 (271)
|+++||+++||||+|.+.
T Consensus 232 ~~A~eA~~~GLV~~vv~~ 249 (327)
T PLN02921 232 YTASEALKMGLVNTVVPL 249 (327)
T ss_pred CCHHHHHHCCCceEEeCH
Confidence 999999999999999864
No 64
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=3.2e-07 Score=83.15 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=93.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH----------------HHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag----------------~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++...+.+.|..++.++..+.|+|.= =|-|+++..- ..+++.|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~ 104 (249)
T PRK07938 25 LPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGF 104 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 77788888988888888766555555431 1445665421 124556778889999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|..+|.-++++||. |++.++++|.+-....|..|... .+.+..| .....+++-.+..+
T Consensus 105 a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~~------------------~l~~~vg--~~~a~~l~ltg~~~ 162 (249)
T PRK07938 105 CLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAAT------------------HLQRLVP--QHLMRALFFTAATI 162 (249)
T ss_pred EeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhHH------------------HHHHhcC--HHHHHHHHHhCCcC
Confidence 99999999999999 99999998876444333322110 0111122 23334444456789
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
+++||+++||||+|.+.
T Consensus 163 ~a~eA~~~Glv~~vv~~ 179 (249)
T PRK07938 163 TAAELHHFGSVEEVVPR 179 (249)
T ss_pred CHHHHHHCCCccEEeCH
Confidence 99999999999999864
No 65
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.71 E-value=4e-07 Score=83.61 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=93.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHH----------------HHHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-----NSPGGsV~a----------------g~~Iyd~I~~~~~pV~tvv~G 171 (271)
++.++...+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 116 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAG 116 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECC
Confidence 78888899999999888776556555532 134555431 012455677888999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
.|..+|.-++++||. |++.++++|.+-.+..|.. ....-. .. +.+..| .....+++-.+..
T Consensus 117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~~~~-~~-----------l~~~vG--~~~a~~l~ltg~~ 177 (273)
T PRK07396 117 YAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSF---DGGYGA-SY-----------LARIVG--QKKAREIWFLCRQ 177 (273)
T ss_pred EEehHHHHHHHhCCE--EEeeCCcEEeccccccccc---CCchHH-HH-----------HHHHhh--HHHHHHHHHhCCC
Confidence 999999999999999 9999999987755543321 010000 00 111122 2223444445678
Q ss_pred ccHHHHHHcCCceeeccC
Q 024202 252 LSAAEAMEFGLIDGILET 269 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~ 269 (271)
|+++||+++||||+|++.
T Consensus 178 ~~A~eA~~~GLv~~vv~~ 195 (273)
T PRK07396 178 YDAQEALDMGLVNTVVPL 195 (273)
T ss_pred cCHHHHHHcCCcCeecCH
Confidence 999999999999999864
No 66
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=6e-07 Score=81.63 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=90.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH---------------HHHHHHHHHhhCCceEEEEeccc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS---------------VLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a---------------g~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
++.++...+.+.|..++ +..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67788888888888876 33555554322 33455432 12355667788999999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcccc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLS 253 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ls 253 (271)
..+|.-++++||. |++.++++|.+-....|.. -+..... . +.+..| .....+++=.+..|+
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~~----~--------l~~~iG--~~~a~~l~ltg~~~~ 164 (255)
T PRK08150 104 VGGGLELASAAHI--RVADESTYFALPEGQRGIF---VGGGGSV----R--------VPRLIG--VARMTDMMLTGRVYD 164 (255)
T ss_pred EcHHHHHHHhCCE--EEEeCCCEEeccccccCCC---CCccHHH----H--------HHHHhC--HHHHHHHHHcCCcCC
Confidence 9999999999999 9999999887644433321 1110000 0 111122 222334444467899
Q ss_pred HHHHHHcCCceeeccC
Q 024202 254 AAEAMEFGLIDGILET 269 (271)
Q Consensus 254 a~EAle~GLID~I~~~ 269 (271)
++||+++||||+|++.
T Consensus 165 a~eA~~~Glv~~vv~~ 180 (255)
T PRK08150 165 AQEGERLGLAQYLVPA 180 (255)
T ss_pred HHHHHHcCCccEeeCc
Confidence 9999999999999874
No 67
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.71 E-value=3.3e-07 Score=83.48 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=91.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHH----------------HHHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-----NSPGGsV~a----------------g~~Iyd~I~~~~~pV~tvv~G 171 (271)
++.++.+.+.+.+..++.++..+.|+|.= =|-|+++.. ...+++.|..+++||++.+.|
T Consensus 27 l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (259)
T TIGR01929 27 FRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNG 106 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 67788888888888887665555444421 133454421 123556778889999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
.|..+|.-++++||. |++.++++|.+.....|..- +..-. .. +.+..| .....+++-.+..
T Consensus 107 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p---~~~~~-~~-----------l~~~vG--~~~a~~l~l~g~~ 167 (259)
T TIGR01929 107 YAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSFD---GGYGS-SY-----------LARIVG--QKKAREIWFLCRQ 167 (259)
T ss_pred EEehHHHHHHHhCCE--EEecCCCEecCcccccccCC---CccHH-HH-----------HHHHhH--HHHHHHHHHhCCc
Confidence 999999999999999 99999999987655544210 00000 00 111112 1223344444678
Q ss_pred ccHHHHHHcCCceeeccC
Q 024202 252 LSAAEAMEFGLIDGILET 269 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~ 269 (271)
++++||+++||||+|+++
T Consensus 168 ~~a~eA~~~Glv~~vv~~ 185 (259)
T TIGR01929 168 YDAEQALDMGLVNTVVPL 185 (259)
T ss_pred cCHHHHHHcCCcccccCH
Confidence 999999999999999764
No 68
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=4.6e-07 Score=82.92 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=90.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-----------------HHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag-----------------~~Iyd~I~~~~~pV~tvv~G 171 (271)
++.++...+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.+.|
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 67888889999999888766555555421 1334544311 12344566778999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
.|..+|.-++++||. |++.++++|.+-....|... +.... . .+.+..|. ....+++-.+..
T Consensus 116 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~~-~-----------~l~~~vG~--~~a~~l~ltg~~ 176 (268)
T PRK07327 116 PAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVAA---GDHAA-I-----------VWPLLCGM--AKAKYYLLLCEP 176 (268)
T ss_pred eeeehhhHHHHhCCE--EEecCCCEEeCcccccCCCC---Ccchh-h-----------HHHHHhCH--HHHHHHHHcCCc
Confidence 999999999999999 99999999875433333221 10000 0 01111121 223334445678
Q ss_pred ccHHHHHHcCCceeeccC
Q 024202 252 LSAAEAMEFGLIDGILET 269 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~ 269 (271)
|+++||+++||||+|.+.
T Consensus 177 ~~a~eA~~~Glv~~vv~~ 194 (268)
T PRK07327 177 VSGEEAERIGLVSLAVDD 194 (268)
T ss_pred cCHHHHHHcCCcceecCH
Confidence 999999999999999764
No 69
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=3.4e-07 Score=83.44 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=90.1
Q ss_pred eCh-hHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH----------------------HHHHHHHHhhCCce
Q 024202 113 INS-MVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV----------------------LAIYDCMSWIKPKV 165 (271)
Q Consensus 113 Id~-~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag----------------------~~Iyd~I~~~~~pV 165 (271)
++. ++.+.+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|..+++||
T Consensus 27 l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpv 106 (266)
T PRK09245 27 LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPV 106 (266)
T ss_pred CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCE
Confidence 553 677888888888887665555554321 445554221 12445677788999
Q ss_pred EEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 024202 166 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQY 245 (271)
Q Consensus 166 ~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~ 245 (271)
++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. -+.... . .+.+..| .....++
T Consensus 107 Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~---p~~g~~----~--------~l~~~vG--~~~a~~l 167 (266)
T PRK09245 107 IAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLI---PGDGGA----W--------LLPRIIG--MARAAEM 167 (266)
T ss_pred EEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcC---CCcchh----h--------hHHHHhh--HHHHHHH
Confidence 999999999999999999999 9999999987655443321 110000 0 0111111 1222334
Q ss_pred hhCCccccHHHHHHcCCceeeccC
Q 024202 246 TERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 246 ~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
+-.+..|+++||+++||||+|.+.
T Consensus 168 ~l~g~~~~a~eA~~~Glv~~vv~~ 191 (266)
T PRK09245 168 AFTGDAIDAATALEWGLVSRVVPA 191 (266)
T ss_pred HHcCCCcCHHHHHHcCCcceecCH
Confidence 444678999999999999999764
No 70
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.70 E-value=6e-07 Score=81.53 Aligned_cols=137 Identities=14% Similarity=0.107 Sum_probs=93.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH------------HHHHHHHHHhhCCceEEEEecccchH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS------------VLAIYDCMSWIKPKVGTVCFGVAASQ 176 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a------------g~~Iyd~I~~~~~pV~tvv~G~AASa 176 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.+ ...++..|..+++||++.+.|.|..+
T Consensus 24 l~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (251)
T TIGR03189 24 VDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGG 103 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeH
Confidence 788888999999999887665555544311 34455432 12355567788899999999999999
Q ss_pred HHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHH
Q 024202 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256 (271)
Q Consensus 177 a~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~E 256 (271)
|.-++++||. |++.++++|.+-....|... ..... .+.+..| .....+++=.+.-++++|
T Consensus 104 G~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~~~~-------------~l~~~vg--~~~a~~l~ltg~~~~a~e 163 (251)
T TIGR03189 104 GLEVAAAGNL--MFAAPDAKLGQPEIVLGVFA---PAASC-------------LLPERMG--RVAAEDLLYSGRSIDGAE 163 (251)
T ss_pred HHHHHHhCCE--EEEcCCCEEeCchhhcCCCC---CchHH-------------HHHHHhC--HHHHHHHHHcCCCCCHHH
Confidence 9999999999 99999998876444333221 11000 0112222 233444554566799999
Q ss_pred HHHcCCceeeccC
Q 024202 257 AMEFGLIDGILET 269 (271)
Q Consensus 257 Ale~GLID~I~~~ 269 (271)
|+++||||+|.++
T Consensus 164 A~~~Glv~~v~~~ 176 (251)
T TIGR03189 164 GARIGLANAVAED 176 (251)
T ss_pred HHHCCCcceecCc
Confidence 9999999999864
No 71
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=4.7e-07 Score=81.77 Aligned_cols=136 Identities=14% Similarity=0.181 Sum_probs=90.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHH----------HHHHHHHHHhhCCceEEEEecccchHHH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYS----------VLAIYDCMSWIKPKVGTVCFGVAASQAA 178 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~----INSPGGsV~a----------g~~Iyd~I~~~~~pV~tvv~G~AASaa~ 178 (271)
++.++...+.+.+..++. +..+.|+|. .=|.|+++.. ...+++.|..+++||++.+.|.|..+|.
T Consensus 24 l~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~ 102 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGL 102 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccHH
Confidence 788888899998888774 344444442 1134455431 1345667778899999999999999999
Q ss_pred HHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHH
Q 024202 179 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAM 258 (271)
Q Consensus 179 lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAl 258 (271)
-++++||. |++.++++|.+-....|.. -+.... ..+.+..| .....+++=.+..++++||+
T Consensus 103 ~lal~cD~--~ia~~~a~f~~pe~~~G~~---p~~g~~------------~~l~~~~G--~~~a~~l~ltg~~~~a~eA~ 163 (243)
T PRK07854 103 QLAMACDL--RVVAPEAYFQFPVAKYGIA---LDNWTI------------RRLSSLVG--GGRARAMLLGAEKLTAEQAL 163 (243)
T ss_pred HHHHhCCE--EEEcCCCEEeccccccccC---CCccHH------------HHHHHHhC--HHHHHHHHHcCCCcCHHHHH
Confidence 99999999 9999999987533333221 111000 01122223 22334444456789999999
Q ss_pred HcCCceeecc
Q 024202 259 EFGLIDGILE 268 (271)
Q Consensus 259 e~GLID~I~~ 268 (271)
++||||+|.+
T Consensus 164 ~~Glv~~v~~ 173 (243)
T PRK07854 164 ATGMANRIGT 173 (243)
T ss_pred HCCCcccccC
Confidence 9999999853
No 72
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=4.2e-07 Score=83.49 Aligned_cols=139 Identities=13% Similarity=0.067 Sum_probs=91.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH----------------------HHHHHHHHhhCCceE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV----------------------LAIYDCMSWIKPKVG 166 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag----------------------~~Iyd~I~~~~~pV~ 166 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ..+++.|..+++||+
T Consensus 34 l~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 113 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVI 113 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 77788888999998888766555555431 1445554321 134456777889999
Q ss_pred EEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 024202 167 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYT 246 (271)
Q Consensus 167 tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~ 246 (271)
+.+.|.|..+|.-++++||. |++.++++|.+-....|..- .+.... ..+.+..| .....+++
T Consensus 114 aav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~~------------~~l~~~vG--~~~A~~l~ 175 (276)
T PRK05864 114 AAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTA--SELGLS------------YLLPRAIG--SSRAFEIM 175 (276)
T ss_pred EEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCC--CCcchh------------eehHhhhC--HHHHHHHH
Confidence 99999999999999999999 99999998875443333210 010000 00111223 23334433
Q ss_pred hCCccccHHHHHHcCCceeeccC
Q 024202 247 ERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 247 ~~~~~lsa~EAle~GLID~I~~~ 269 (271)
-.+..++++||+++||||+|.+.
T Consensus 176 l~g~~~~a~eA~~~Glv~~vv~~ 198 (276)
T PRK05864 176 LTGRDVDAEEAERIGLVSRQVPD 198 (276)
T ss_pred HcCCccCHHHHHHcCCcceeeCH
Confidence 34567899999999999999764
No 73
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.69 E-value=5.8e-07 Score=81.56 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=90.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------------HHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag------------------~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++...+.+.|..++.++ .+.|+|.=+ |-|+++... ..+++.|..+++||++.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 101 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN 101 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67888899999999988765 665555311 334443210 1234567788999999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-++++||. |++.+++.|.+-....|. ..+..-.. .+.+..| .....+++-.+.
T Consensus 102 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG~---~p~~g~~~------------~l~~~vG--~~~a~~l~l~g~ 162 (256)
T TIGR02280 102 GVAAGAGANLALACDI--VLAAESARFIQAFAKIGL---IPDSGGTW------------SLPRLVG--RARAMGLAMLGE 162 (256)
T ss_pred CeeehHHHHHHHhCCE--EEecCCCEEeChhhhcCC---CCCccHHH------------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 999999998764333321 11100000 0111112 122233444467
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|.+.
T Consensus 163 ~~~a~eA~~~Glv~~vv~~ 181 (256)
T TIGR02280 163 KLDARTAASWGLIWQVVDD 181 (256)
T ss_pred CCCHHHHHHcCCcceeeCh
Confidence 8999999999999999764
No 74
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=7.3e-07 Score=81.14 Aligned_cols=138 Identities=13% Similarity=0.098 Sum_probs=91.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHHH----------HH--HHHHHhhCCceEEEEecccch
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSVL----------AI--YDCMSWIKPKVGTVCFGVAAS 175 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~ag~----------~I--yd~I~~~~~pV~tvv~G~AAS 175 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.... .+ +..+..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 677888899999998887765555555322 3356554211 11 122345678999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~ 255 (271)
+|.-++++||. |++.++++|.+.....|.. -+.... . .+.+..| .....+++-.+..++++
T Consensus 108 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vg--~~~a~~lll~g~~~~a~ 168 (259)
T PRK06494 108 GGFELALACDL--IVAAENATFALPEPRVGLA---ALAGGL----H--------RLPRQIG--LKRAMGMILTGRRVTAR 168 (259)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCcccccCCC---CCchHH----H--------HHHHHcC--HHHHHHHHHcCCcCCHH
Confidence 99999999999 9999999987755544321 111000 0 1112223 23334444456789999
Q ss_pred HHHHcCCceeeccC
Q 024202 256 EAMEFGLIDGILET 269 (271)
Q Consensus 256 EAle~GLID~I~~~ 269 (271)
||+++||||+|++.
T Consensus 169 eA~~~GLv~~vv~~ 182 (259)
T PRK06494 169 EGLELGFVNEVVPA 182 (259)
T ss_pred HHHHcCCCcEecCH
Confidence 99999999999864
No 75
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.68 E-value=8.2e-07 Score=81.23 Aligned_cols=137 Identities=14% Similarity=0.173 Sum_probs=92.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH----------------HHHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a----------------g~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.|.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (266)
T PRK08139 35 LSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGI 114 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECce
Confidence 677888899998888877655554444211 23344421 0134556778889999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|..+|.-++++||. |++.++++|.+-....|...... .. . +.+..| .....+++-.++.+
T Consensus 115 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~---~~--~-----------l~r~vG--~~~A~~l~ltg~~~ 174 (266)
T PRK08139 115 ATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTP---MV--A-----------LSRNVP--RKQAMEMLLTGEFI 174 (266)
T ss_pred eeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCcc---HH--H-----------HHHHhC--HHHHHHHHHcCCcc
Confidence 99999999999999 99999999876555444331110 00 0 111122 23334444456789
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
+++||+++||||+|.++
T Consensus 175 ~a~eA~~~GLv~~vv~~ 191 (266)
T PRK08139 175 DAATAREWGLVNRVVPA 191 (266)
T ss_pred CHHHHHHcCCccEeeCh
Confidence 99999999999999865
No 76
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=6e-07 Score=81.45 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=90.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC------CcHHH-------------------HHHHHHHHHhhCCceEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLNCPG------GSIYS-------------------VLAIYDCMSWIKPKVGT 167 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPG------GsV~a-------------------g~~Iyd~I~~~~~pV~t 167 (271)
++.++...+.+.|..++.++..+.|+| .+-| +++.. ...++..|..+++||++
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVRFLLI--NANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 677888899998988887665554443 3333 44431 12344567788999999
Q ss_pred EEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Q 024202 168 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTE 247 (271)
Q Consensus 168 vv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~ 247 (271)
.+.|.|..+|.-++++||. |++.++++|.+-....|.. -+..... .+.+..| .....+++-
T Consensus 104 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~---p~~g~~~------------~l~~~vg--~~~a~~l~l 164 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGLA---PDAGGLF------------LLTRAIG--LNRATHLAM 164 (255)
T ss_pred EecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCCC---CCCchhh------------hhHHhhC--HHHHHHHHH
Confidence 9999999999999999999 9999999887533222211 1100000 0111112 223344444
Q ss_pred CCccccHHHHHHcCCceeeccC
Q 024202 248 RDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 248 ~~~~lsa~EAle~GLID~I~~~ 269 (271)
.+..++++||+++||||+|.+.
T Consensus 165 ~g~~~sa~eA~~~Glv~~vv~~ 186 (255)
T PRK07260 165 TGEALTAEKALEYGFVYRVAES 186 (255)
T ss_pred hCCccCHHHHHHcCCcceecCH
Confidence 5678999999999999999864
No 77
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=6.5e-07 Score=81.96 Aligned_cols=138 Identities=16% Similarity=0.184 Sum_probs=91.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH--------------------------HHHHHHHHHhhC
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS--------------------------VLAIYDCMSWIK 162 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a--------------------------g~~Iyd~I~~~~ 162 (271)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++.. ...+++.|..++
T Consensus 30 l~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCR 109 (272)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCC
Confidence 788888999999998887655554444321 23344432 123455677889
Q ss_pred CceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 024202 163 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV 242 (271)
Q Consensus 163 ~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i 242 (271)
+||++.+.|.|..+|.-|+++||. |++.++++|.+.....|.. -+.... ..+.+..|. ...
T Consensus 110 kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~~G~--~~a 170 (272)
T PRK06142 110 KPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMV---ADVGSL------------QRLPRIIGD--GHL 170 (272)
T ss_pred CCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCC---CCchHH------------HHHHHHhCH--HHH
Confidence 999999999999999999999999 9999999886655443321 111000 001111221 223
Q ss_pred HHHhhCCccccHHHHHHcCCceeeccC
Q 024202 243 QQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 243 ~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
.+++-.+..++++||+++||||+|+++
T Consensus 171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 171 RELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred HHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 344444677999999999999999864
No 78
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=5.2e-07 Score=82.24 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=92.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------------HHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------------LAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag------------------~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++..- ..+++.|+.+++||++.+.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 108 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 777888889888888876655555554422 334554320 1256678888999999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-++++||. |++.++++|.+.....|.. -+..-. . +..+. ......+++-.+.
T Consensus 109 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~---p~~g~~--~-----------~~~~v--G~~~a~~lll~g~ 168 (262)
T PRK07468 109 GQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLI---PATISP--Y-----------VVARM--GEANARRVFMSAR 168 (262)
T ss_pred CEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCC---cccchh--h-----------HHhhc--cHHHHHHHHHhCC
Confidence 9999999999999999 9999999886654433321 110000 0 00112 2233344454577
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
-++++||+++||||+|.+.
T Consensus 169 ~~~a~eA~~~Glv~~v~~~ 187 (262)
T PRK07468 169 LFDAEEAVRLGLLSRVVPA 187 (262)
T ss_pred ccCHHHHHHcCCcceecCH
Confidence 8999999999999999864
No 79
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=8.4e-07 Score=80.55 Aligned_cols=138 Identities=15% Similarity=0.141 Sum_probs=92.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH-------------HHHHHHHHHhhCCceEEEEecccch
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGVAAS 175 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a-------------g~~Iyd~I~~~~~pV~tvv~G~AAS 175 (271)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. ...++..|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~G 107 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALG 107 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeH
Confidence 677888899999988887665555555311 23444421 1234566778889999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~ 255 (271)
+|.-++++||. |++.++++|.+-....|.. .+.... . .+.+..| .....+++-.+..++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~~~vG--~~~a~~l~l~g~~~~a~ 168 (257)
T PRK05862 108 GGCELAMMCDI--IIAADTAKFGQPEIKLGVL---PGMGGS----Q--------RLTRAVG--KAKAMDLCLTGRMMDAA 168 (257)
T ss_pred HHHHHHHHCCE--EEEeCCCEEeCchhccCcC---CCccHH----H--------HHHHHhC--HHHHHHHHHhCCccCHH
Confidence 99999999999 9999999887644333321 111000 0 0112222 12233444446789999
Q ss_pred HHHHcCCceeeccC
Q 024202 256 EAMEFGLIDGILET 269 (271)
Q Consensus 256 EAle~GLID~I~~~ 269 (271)
||+++||||+|++.
T Consensus 169 eA~~~Glv~~vv~~ 182 (257)
T PRK05862 169 EAERAGLVSRVVPA 182 (257)
T ss_pred HHHHcCCCCEeeCH
Confidence 99999999999864
No 80
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.65 E-value=1e-06 Score=80.72 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=93.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH-----------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS-----------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~a-----------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~ 114 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIR 114 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 788888999999998887765555444321 22444431 01244567788899999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-++++||. |++.++++|.+.....|..-...-.. .+.+..| .....+++-.+.
T Consensus 115 G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~~~vG--~~~a~~l~ltg~ 175 (269)
T PRK06127 115 GYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYDGVK---------------NLVDLVG--PSAAKDLFYTAR 175 (269)
T ss_pred CEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCccHHH---------------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 99999999987655443220000000 0111112 233344444577
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|++.
T Consensus 176 ~~~a~eA~~~Glv~~vv~~ 194 (269)
T PRK06127 176 RFDAAEALRIGLVHRVTAA 194 (269)
T ss_pred CCCHHHHHHcCCCCEeeCH
Confidence 8999999999999999864
No 81
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.65 E-value=6e-07 Score=81.89 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=91.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~a----------------g~~Iyd~I~~~~~pV~tvv~G 171 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 111 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG 111 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677888899999998887665555554311 33555432 122445567788999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQ-SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~-~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
.|..+|.-++++||. |++.++++|.+-... .|. .-+.... . .+.+..| .....+++-.+.
T Consensus 112 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~~G~---~p~~g~~----~--------~l~~~vG--~~~a~~l~l~g~ 172 (262)
T PRK06144 112 ACVGGGAAIAAACDL--RIATPSARFGFPIARTLGN---CLSMSNL----A--------RLVALLG--AARVKDMLFTAR 172 (262)
T ss_pred eeeehHHHHHHhCCE--EEecCCCEeechhHHhccC---CCCccHH----H--------HHHHHhC--HHHHHHHHHcCC
Confidence 999999999999999 999999998653321 221 1111000 0 1122222 233344444577
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|+++
T Consensus 173 ~~~a~eA~~~Glv~~vv~~ 191 (262)
T PRK06144 173 LLEAEEALAAGLVNEVVED 191 (262)
T ss_pred CcCHHHHHHcCCcCeecCH
Confidence 8999999999999999864
No 82
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.65 E-value=8e-07 Score=80.84 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=92.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHH------------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYS------------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~a------------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 107 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVH 107 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 77788889999998888765555444421 133455431 02345567778899999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-++++||. |++.++++|.+-....|.. -+.... . +.+..| .....+++-.+.
T Consensus 108 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~--~-----------l~~~vg--~~~a~~l~l~g~ 167 (262)
T PRK05995 108 GDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLI---PATISP--Y-----------VIRAMG--ERAARRYFLTAE 167 (262)
T ss_pred CEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccC---ccchHH--H-----------HHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999987755444332 111100 0 111222 233344444567
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|++.
T Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (262)
T PRK05995 168 RFDAAEALRLGLVHEVVPA 186 (262)
T ss_pred ccCHHHHHHcCCCCeecCH
Confidence 7999999999999999853
No 83
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.64 E-value=4.6e-07 Score=83.53 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=95.1
Q ss_pred eeChhHHHHHHHHHHHHhccCCCCCEEEEE------eCCCCcHHHH-----------------HHHHHHHHhhCCceEEE
Q 024202 112 PINSMVAQRAISQLVTLATIDEDADILMYL------NCPGGSIYSV-----------------LAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 112 ~Id~~~a~~ii~~L~~l~~~~~~~~I~L~I------NSPGGsV~ag-----------------~~Iyd~I~~~~~pV~tv 168 (271)
.++.++...+.+.|..++.++..+.|+|.= =|.|+++... ..++..|..+++||++.
T Consensus 34 al~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 113 (278)
T PLN03214 34 SMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCA 113 (278)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 377888899999999988776666555532 1445554321 12445677788999999
Q ss_pred EecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Q 024202 169 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 248 (271)
Q Consensus 169 v~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~ 248 (271)
+.|.|..+|.-++++||. |++.++++|.+.....|.. ..+.... ..+.+..| .....+++-.
T Consensus 114 V~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~--~p~~~~~------------~~l~~~~G--~~~a~~lllt 175 (278)
T PLN03214 114 IRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP--VPKFWAR------------LFMGRVID--RKVAESLLLR 175 (278)
T ss_pred EcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC--CCChhHH------------HHHHHhcC--HHHHHHHHHc
Confidence 999999999999999999 9999999987644433321 0111000 11222233 3444455555
Q ss_pred CccccHHHHHHcCCceeeccC
Q 024202 249 DRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 249 ~~~lsa~EAle~GLID~I~~~ 269 (271)
+.-|+++||+++||||+|++.
T Consensus 176 g~~~~a~eA~~~Glv~~vv~~ 196 (278)
T PLN03214 176 GRLVRPAEAKQLGLIDEVVPA 196 (278)
T ss_pred CCccCHHHHHHcCCCcEecCh
Confidence 778999999999999999864
No 84
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.64 E-value=1.2e-06 Score=79.77 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=91.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-------------------HHHHHHHHhhCCceEEEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-------------------LAIYDCMSWIKPKVGTVC 169 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag-------------------~~Iyd~I~~~~~pV~tvv 169 (271)
++.++.+.+.+.+..++ ++..+.|+|.= =|.|+++..- ..++..|..+++||++.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 106 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV 106 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67788889999999888 66556555531 1344554321 124556778889999999
Q ss_pred ecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 170 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 170 ~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
.|.|..+|.-++++||. |++.++++|.+-....|. ..+.... ..+ .+..| .....+++-.+
T Consensus 107 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~---~p~~g~~----~~l--------~~~vG--~~~a~~l~l~g 167 (262)
T PRK08140 107 NGVAAGAGANLALACDI--VLAARSASFIQAFVKIGL---VPDSGGT----WFL--------PRLVG--MARALGLALLG 167 (262)
T ss_pred CCeeehhHHHHHHhCCE--EEecCCCEEeccccccCC---CCCccHH----HHH--------HHHhC--HHHHHHHHHcC
Confidence 99999999999999999 999999998753333221 1111000 001 11112 22334444456
Q ss_pred ccccHHHHHHcCCceeeccC
Q 024202 250 RFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~~~ 269 (271)
..++++||+++||||+|.+.
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~ 187 (262)
T PRK08140 168 EKLSAEQAEQWGLIWRVVDD 187 (262)
T ss_pred CCcCHHHHHHcCCccEeeCh
Confidence 78999999999999999864
No 85
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=5.2e-07 Score=83.60 Aligned_cols=136 Identities=14% Similarity=0.034 Sum_probs=91.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH-------------------------------------H
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS-------------------------------------V 151 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a-------------------------------------g 151 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. -
T Consensus 28 l~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (288)
T PRK08290 28 QNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVY 107 (288)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 677888888888888877655555554211 23344321 0
Q ss_pred HHHHHHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 024202 152 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMY 231 (271)
Q Consensus 152 ~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iy 231 (271)
..++..|+.+++||++.+.|.|..+|.-|+++||. |++.+++.|.+-....|..| .... .+.
T Consensus 108 ~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~----~~~~-----~l~------- 169 (288)
T PRK08290 108 LGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPG----VEYF-----AHP------- 169 (288)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCc----chHH-----HHH-------
Confidence 12345577889999999999999999999999999 99999999876444444322 1100 000
Q ss_pred HHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 232 AAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 232 a~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
+..| .....+++-.+..++++||+++||||+|++.
T Consensus 170 -~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 204 (288)
T PRK08290 170 -WELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPR 204 (288)
T ss_pred -HHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence 1112 2333444445678999999999999999864
No 86
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=9.8e-07 Score=80.04 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=89.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH---------------HH-HHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV---------------LA-IYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag---------------~~-Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|-|+++... .. +...++.+++||++.+.|.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK06563 23 FDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGY 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCe
Confidence 67788889999888887765444433321 0334554320 11 1224667789999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|..+|..++++||. |++.++++|.+.....|.. .+..... . +.+..| .....+++-.+..|
T Consensus 103 a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~~----~--------l~~~vG--~~~a~~l~ltg~~~ 163 (255)
T PRK06563 103 CLTLGIELMLAADI--VVAADNTRFAQLEVQRGIL---PFGGATL----R--------FPQAAG--WGNAMRYLLTGDEF 163 (255)
T ss_pred eecHHHHHHHhCCE--EEecCCCEEeChhhhcCCC---CCccHHH----H--------HHHHhh--HHHHHHHHHcCCCc
Confidence 99999999999999 9999999987755444321 0000000 0 111122 12233444456789
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
+++||+++||||+|.+.
T Consensus 164 ~a~eA~~~Glv~~vv~~ 180 (255)
T PRK06563 164 DAQEALRLGLVQEVVPP 180 (255)
T ss_pred CHHHHHHcCCCcEeeCH
Confidence 99999999999999864
No 87
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=1.2e-06 Score=79.77 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=91.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------CcHHH---------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLNCPG-------GSIYS---------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPG-------GsV~a---------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++...+.+.+..++.++..+.|+| .+-| +++.. ...+++.|..+++||++.+.
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 788888999999998887655554443 3433 44322 12356677788999999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-++++||. |++.++++|.+.....|.. .+.... ..+ .+..| .....+++-.+.
T Consensus 106 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~---p~~g~~-~~l-----------~~~vG--~~~a~~l~l~g~ 166 (260)
T PRK07657 106 GIALGGGLELALACDF--RIAAESASLGLTETTLAII---PGAGGT-QRL-----------PRLIG--VGRAKELIYTGR 166 (260)
T ss_pred CEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcC---CCccHH-HHH-----------HHHhC--HHHHHHHHHhCC
Confidence 9999999999999999 9999999887655444321 110000 001 11112 122334444466
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|.+.
T Consensus 167 ~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK07657 167 RISAQEAKEIGLVEFVVPA 185 (260)
T ss_pred CCCHHHHHHcCCCCeecCH
Confidence 7999999999999999864
No 88
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.62 E-value=1.2e-06 Score=80.46 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=91.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-------------------HHHHHHHHhhCCceEEEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-------------------LAIYDCMSWIKPKVGTVC 169 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag-------------------~~Iyd~I~~~~~pV~tvv 169 (271)
++.++...+.+.|..++.++..+.|+|.= =|-|+++... ..++..|..+++||++.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888889999998888766555555431 1334554321 124556777889999999
Q ss_pred ecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 170 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 170 ~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
.|.|..+|.-++++||. |++.++++|.+-....|.. -+.... ..+.+..| .....+++-.+
T Consensus 112 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~iG--~~~a~~llltg 172 (275)
T PRK09120 112 NGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGIP---PGGGVS------------KAMADTVG--HRDALYYIMTG 172 (275)
T ss_pred cCEEechhHHHHHhCCE--EEEeCCcEecCCccccCCC---CCcchH------------HHHHHHcC--HHHHHHHHhcC
Confidence 99999999999999999 9999999987644333321 110000 01111122 23334444446
Q ss_pred ccccHHHHHHcCCceeeccC
Q 024202 250 RFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~~~ 269 (271)
..++++||+++||||+|++.
T Consensus 173 ~~~~A~eA~~~Glv~~vv~~ 192 (275)
T PRK09120 173 ETFTGRKAAEMGLVNESVPL 192 (275)
T ss_pred CccCHHHHHHcCCcceecCH
Confidence 78999999999999999864
No 89
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.61 E-value=1.5e-06 Score=78.69 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=88.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH------------HHHHHHHHhhCCceEEEEecccchH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVAASQ 176 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag------------~~Iyd~I~~~~~pV~tvv~G~AASa 176 (271)
++.++.+.+.+.+..++.++..+.|+|.= =|.|+++..- ..++..|..+++||++.+.|.|..+
T Consensus 24 l~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (248)
T PRK06072 24 LNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGA 103 (248)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 77888899999999888765555554431 1445665321 2345567778899999999999999
Q ss_pred HHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHH
Q 024202 177 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256 (271)
Q Consensus 177 a~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~E 256 (271)
|.-++++||. |++.++++|.+.....|.. -+.... . .+.+..|. ...+++-.+..++++|
T Consensus 104 G~~lal~cD~--~ia~~~a~f~~~~~~~Gl~---p~~g~~-~-----------~l~~~~g~---~a~~lll~g~~~~a~e 163 (248)
T PRK06072 104 CIGIALSTDF--KFASRDVKFVTAFQRLGLA---SDTGVA-Y-----------FLLKLTGQ---RFYEILVLGGEFTAEE 163 (248)
T ss_pred HHHHHHhCCE--EEEcCCCEEecchhhcCcC---CCchHH-H-----------HHHHHhhH---HHHHHHHhCCccCHHH
Confidence 9999999999 9999999987654443322 111100 0 01111121 1222332356789999
Q ss_pred HHHcCCceee
Q 024202 257 AMEFGLIDGI 266 (271)
Q Consensus 257 Ale~GLID~I 266 (271)
|+++||||++
T Consensus 164 A~~~Glv~~~ 173 (248)
T PRK06072 164 AERWGLLKIS 173 (248)
T ss_pred HHHCCCcccc
Confidence 9999999964
No 90
>PRK08321 naphthoate synthase; Validated
Probab=98.60 E-value=1.7e-06 Score=80.70 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=94.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE-----------EeCCCCcHHHH-----------------------H---HHH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMY-----------LNCPGGSIYSV-----------------------L---AIY 155 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~-----------INSPGGsV~ag-----------------------~---~Iy 155 (271)
++.++...+.+.|..++.++..+.|+|. .=|.|+++... . .+.
T Consensus 49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (302)
T PRK08321 49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ 128 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 7888889999999998877666666664 33667765420 0 234
Q ss_pred HHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEec-cCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 024202 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM-PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAF 234 (271)
Q Consensus 156 d~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~-PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~ 234 (271)
+.|..+++||++.+.|.|..+|.-|+++||. |++. ++++|.+-....|.. +.... . ..+.+.
T Consensus 129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~--p~~~~-~------------~~L~r~ 191 (302)
T PRK08321 129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSF--DGGYG-S------------AYLARQ 191 (302)
T ss_pred HHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccC--CCchH-H------------HHHHHH
Confidence 5677788999999999999999999999999 9998 689887644333211 00000 0 001122
Q ss_pred hCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 235 TGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 235 tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
.| .....+++=.+..++++||+++||||+|++.
T Consensus 192 vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~ 224 (302)
T PRK08321 192 VG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH 224 (302)
T ss_pred hC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCH
Confidence 23 2333444445678999999999999999864
No 91
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.60 E-value=1.7e-06 Score=77.21 Aligned_cols=134 Identities=14% Similarity=0.150 Sum_probs=87.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCC------CCcHHH--------------HHHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYS--------------VLAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSP------GGsV~a--------------g~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++.+.+.+.|..++ + ..+.|+ |... |+++.. ...++..|..+++||++.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~-~~~vvv--l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-D-DRAVVV--ITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-c-cCcEEE--EeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 77788888888888776 2 233333 3333 444321 1345556777889999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccC-cEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 173 AASQAAIILAGGEKGMRYAMPN-ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~Pn-S~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
|..+|.-++++||. |++.++ ++|.+-....|.. +.... . ..+.++.| .....+++-.+..
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~--~~~~~-----~--------~~l~~~~g--~~~a~~lll~g~~ 162 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMT--MPHAA-----I--------ELARDRLT--PSAFQRAVINAEM 162 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCc--CChHH-----H--------HHHHHHcC--HHHHHHHHHcCcc
Confidence 99999999999999 999998 8887644333321 11100 0 00111122 1233344445778
Q ss_pred ccHHHHHHcCCceeeccC
Q 024202 252 LSAAEAMEFGLIDGILET 269 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~ 269 (271)
++++||+++||||+|.+.
T Consensus 163 ~~a~eA~~~Glv~~vv~~ 180 (229)
T PRK06213 163 FDPEEAVAAGFLDEVVPP 180 (229)
T ss_pred cCHHHHHHCCCceeccCh
Confidence 999999999999999864
No 92
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.60 E-value=1.1e-06 Score=81.71 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=89.3
Q ss_pred eeChhHHHHHHHHHHHHhc-----cCCCCCEEEEEe-----CCCCcHHHH----------------HHHHHHHH------
Q 024202 112 PINSMVAQRAISQLVTLAT-----IDEDADILMYLN-----CPGGSIYSV----------------LAIYDCMS------ 159 (271)
Q Consensus 112 ~Id~~~a~~ii~~L~~l~~-----~~~~~~I~L~IN-----SPGGsV~ag----------------~~Iyd~I~------ 159 (271)
.++.++.+.+.+.+..++. ++..+.|+|.=+ |.|+++... ..+++.+.
T Consensus 39 al~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (287)
T PRK08788 39 CFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGF 118 (287)
T ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888889888888876 444444444222 345554321 12233333
Q ss_pred hhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 024202 160 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPI 239 (271)
Q Consensus 160 ~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~ 239 (271)
.+++||++.+.|.|..+|.-++++||. |++.++++|.+-....|. .-+..-. ..+.+..| .
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lGl---~p~~g~~------------~~l~~~vG--~ 179 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFNL---FPGMGAY------------SFLARRVG--P 179 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhCc---CCCchHH------------HHHHHHhh--H
Confidence 467899999999999999999999999 999999988654433332 1111000 01112222 2
Q ss_pred HHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 240 EKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 240 e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
....+++-.+..|+++||+++||||++.+.
T Consensus 180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~ 209 (287)
T PRK08788 180 KLAEELILSGKLYTAEELHDMGLVDVLVED 209 (287)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 333455555778999999999999999764
No 93
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.59 E-value=1.9e-06 Score=78.25 Aligned_cols=138 Identities=15% Similarity=0.076 Sum_probs=90.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHHHH----------HHHHHH-HhhCCceEEEEecccchHH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSVL----------AIYDCM-SWIKPKVGTVCFGVAASQA 177 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~----INSPGGsV~ag~----------~Iyd~I-~~~~~pV~tvv~G~AASaa 177 (271)
++.++.+.+.+.|..++.++..+.|+|. .=|.|+++.... .+...+ ..+++||++.+.|.|..+|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence 6888889999999998876655655542 124456654310 111111 3467899999999999999
Q ss_pred HHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Q 024202 178 AIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257 (271)
Q Consensus 178 ~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EA 257 (271)
.-++++||. |++.++++|.+-....|.. -+.... ..+.+..| .....+++-.+..++++||
T Consensus 107 ~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vg--~~~a~~l~l~g~~~~a~eA 167 (254)
T PRK08252 107 FELALACDL--IVAARDAKFGLPEVKRGLV---AAGGGL------------LRLPRRIP--YHIAMELALTGDMLTAERA 167 (254)
T ss_pred HHHHHhCCE--EEEeCCCEEeCchhhcCCC---CCchHH------------HHHHHHcC--HHHHHHHHHcCCccCHHHH
Confidence 999999999 9999999886544333321 111100 01112222 3334455545678999999
Q ss_pred HHcCCceeeccC
Q 024202 258 MEFGLIDGILET 269 (271)
Q Consensus 258 le~GLID~I~~~ 269 (271)
+++||||+|+++
T Consensus 168 ~~~Glv~~vv~~ 179 (254)
T PRK08252 168 HELGLVNRLTEP 179 (254)
T ss_pred HHcCCcceecCc
Confidence 999999999864
No 94
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=2.1e-06 Score=78.27 Aligned_cols=138 Identities=15% Similarity=0.101 Sum_probs=90.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHHH----------------HH--HHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL----------------AI--YDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag~----------------~I--yd~I~~~~~pV~tvv~ 170 (271)
++..+.+.+.+.|..++.++..+.|+|.=+ |.|+++.... .+ ...+..+++||++.+.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~ 108 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVE 108 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEEEC
Confidence 788888999999999887765555544211 3345543210 01 1113467889999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-++++||. |++.++++|.+.....|.. -+.... . .+.+..| .....+++-.+.
T Consensus 109 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~--------~l~r~vG--~~~a~~l~ltg~ 169 (263)
T PRK07799 109 GPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLF---PMGGSA----V--------RLVRQIP--YTVACDLLLTGR 169 (263)
T ss_pred CeEeccHHHHHHhCCE--EEecCCCEecCcccccCcC---CCccHH----H--------HHHHHhC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999987654443321 110000 0 0111122 233344454567
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|.+.
T Consensus 170 ~~~a~eA~~~Glv~~vv~~ 188 (263)
T PRK07799 170 HITAAEAKEIGLIGHVVPD 188 (263)
T ss_pred CCCHHHHHHcCCccEecCc
Confidence 8999999999999999865
No 95
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.56 E-value=1.7e-06 Score=79.14 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=91.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a------------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++...+.+.|..++.++..+.|+|.=+ |.|+++.. ...++..|..+++||++.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677888888888888887665565555221 44555431 01345556778899999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-++++||. |++.++++|.+-....|.. -+.... .+.+..|. ....+++-.+.
T Consensus 110 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gi~---p~~~~~-------------~l~~~vG~--~~a~~l~ltg~ 169 (265)
T PRK05674 110 GAAFGGALGLISCCDM--AIGADDAQFCLSEVRIGLA---PAVISP-------------FVVKAIGE--RAARRYALTAE 169 (265)
T ss_pred CEEEechhhHhhhcCE--EEEeCCCEEeCcccccCCC---cchhHH-------------HHHHHhCH--HHHHHHHHhCc
Confidence 9999999999999999 9999999987644333321 111100 01112222 23333343466
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.|+++||+++||||+|.+.
T Consensus 170 ~~~a~eA~~~Glv~~vv~~ 188 (265)
T PRK05674 170 RFDGRRARELGLLAESYPA 188 (265)
T ss_pred ccCHHHHHHCCCcceecCH
Confidence 7999999999999999764
No 96
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=2e-06 Score=78.13 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=90.2
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHHH-----H--------HHHHHHhhCCceEEEEecccch
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL-----A--------IYDCMSWIKPKVGTVCFGVAAS 175 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag~-----~--------Iyd~I~~~~~pV~tvv~G~AAS 175 (271)
++.++...+.+.|..++.++..+.|+|.=+ |.|+++.... . +...+..+++||++.+.|.|..
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 106 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVA 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEh
Confidence 778888999999999887665555554321 4456654311 0 1112235678999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAA 255 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~ 255 (271)
+|.-++++||. |++.++++|.+-....|.. ...... ..+.+..| .....+++-.+..|+++
T Consensus 107 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~iG--~~~a~~lll~g~~~~a~ 167 (254)
T PRK08259 107 GGLELALWCDL--RVAEEDAVFGVFCRRWGVP---LIDGGT------------VRLPRLIG--HSRAMDLILTGRPVDAD 167 (254)
T ss_pred HHHHHHHhCCE--EEecCCCEecCcccccCCC---CCccHH------------HHHHHHhC--HHHHHHHHHcCCccCHH
Confidence 99999999999 9999999886543332211 110000 00111223 23334445456789999
Q ss_pred HHHHcCCceeeccC
Q 024202 256 EAMEFGLIDGILET 269 (271)
Q Consensus 256 EAle~GLID~I~~~ 269 (271)
||+++||||+|++.
T Consensus 168 eA~~~Glv~~vv~~ 181 (254)
T PRK08259 168 EALAIGLANRVVPK 181 (254)
T ss_pred HHHHcCCCCEeeCh
Confidence 99999999999764
No 97
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.2e-06 Score=81.65 Aligned_cols=134 Identities=13% Similarity=-0.008 Sum_probs=92.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH-------------------H-----------HHHHHHH
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS-------------------V-----------LAIYDCM 158 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a-------------------g-----------~~Iyd~I 158 (271)
++.++.+.+.+.|..++.++..+.|+|.=+ |-|+++.. . ...+..|
T Consensus 29 l~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (298)
T PRK12478 29 IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAI 108 (298)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHH
Confidence 678888899999988887665555554211 33444421 0 0134457
Q ss_pred HhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 024202 159 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS-GSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQ 237 (271)
Q Consensus 159 ~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~-g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~ 237 (271)
..+++||++.+.|.|..+|.-|+++||. |++.++++|.+-.... |... .. . +..+.
T Consensus 109 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~--~~---~--------------~~~~v-- 165 (298)
T PRK12478 109 WRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYL--TG---M--------------WLYRL-- 165 (298)
T ss_pred HhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCc--hh---H--------------HHHHh--
Confidence 7788999999999999999999999999 9999999987755442 3221 00 0 00112
Q ss_pred CHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 238 PIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 238 ~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
......+++-.+..++++||+++||||+|++.
T Consensus 166 G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~ 197 (298)
T PRK12478 166 SLAKVKWHSLTGRPLTGVQAAEAELINEAVPF 197 (298)
T ss_pred hHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 23444555555788999999999999999864
No 98
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=2.2e-06 Score=79.84 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=91.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH-------------------------------------
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------------------------------- 151 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag------------------------------------- 151 (271)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++...
T Consensus 34 l~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (302)
T PRK08272 34 ITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMM 113 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHH
Confidence 778888899999988887665555544221 334554321
Q ss_pred ---HHHHHHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 024202 152 ---LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKID 228 (271)
Q Consensus 152 ---~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~ 228 (271)
..++..|..+++||++.+.|.|..+|.-|+++||. |++.+++.|.+-.... .|-+.. . .
T Consensus 114 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~~--gg~~~~-~-------~------ 175 (302)
T PRK08272 114 SRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTRV--WGVPAT-G-------M------ 175 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchhc--ccCChH-H-------H------
Confidence 12455677888999999999999999999999999 9999999886543321 121110 0 0
Q ss_pred HHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 229 RMYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 229 ~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
+....| .....+++-.+..++++||+++||||+|++.
T Consensus 176 --~~~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~ 212 (302)
T PRK08272 176 --WAYRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP 212 (302)
T ss_pred --HHHHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence 111222 3344455545778999999999999999864
No 99
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.52 E-value=3.2e-06 Score=76.85 Aligned_cols=135 Identities=14% Similarity=0.095 Sum_probs=89.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-----------------HHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-----------------LAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag-----------------~~Iyd~I~~~~~pV~tvv~G 171 (271)
++.++.+.+.+.|..++. ..+.|+|.= =|.|+++..- ..++..|..+++||++.|.|
T Consensus 28 l~~~~~~~L~~~l~~~~~--~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 105 (255)
T PRK07112 28 INDRLIAECMDVLDRCEH--AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRG 105 (255)
T ss_pred CCHHHHHHHHHHHHHhhc--CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEec
Confidence 677888888888887762 244444421 1445554320 12455567778999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRF 251 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~ 251 (271)
.|..+|..++++||. |++.++++|.+.....|... ... . . .+.+..| .....+++-.+..
T Consensus 106 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p---~~~-~-~-----------~l~~~vg--~~~a~~l~l~g~~ 165 (255)
T PRK07112 106 KVNAGGIGFVAASDI--VIADETAPFSLSELLFGLIP---ACV-L-P-----------FLIRRIG--TQKAHYMTLMTQP 165 (255)
T ss_pred EEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccCc---chh-h-H-----------HHHHHhC--HHHHHHHHHhCCc
Confidence 999999999999999 99999999977555443321 110 0 0 0112222 2333444444678
Q ss_pred ccHHHHHHcCCceeeccC
Q 024202 252 LSAAEAMEFGLIDGILET 269 (271)
Q Consensus 252 lsa~EAle~GLID~I~~~ 269 (271)
++++||+++||||+|.++
T Consensus 166 ~~a~eA~~~Glv~~vv~~ 183 (255)
T PRK07112 166 VTAQQAFSWGLVDAYGAN 183 (255)
T ss_pred ccHHHHHHcCCCceecCc
Confidence 999999999999999764
No 100
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.51 E-value=5e-06 Score=75.03 Aligned_cols=138 Identities=15% Similarity=0.148 Sum_probs=89.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH-----------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS-----------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~a-----------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++.+.+.+.+..++.++....++|.=. |.|+++.. ...++..|..+++||++.+.
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 102 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT 102 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 778888889888888876543333443322 33555421 11244557778899999999
Q ss_pred cccchHHHHHHhcCCcCcEEecc-CcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHhhC
Q 024202 171 GVAASQAAIILAGGEKGMRYAMP-NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKV-QQYTER 248 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~P-nS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i-~~~~~~ 248 (271)
|.|..+|.-++++||. |++.+ .++|.+.....|... .+.. ...+.+..|.. .. .+++-.
T Consensus 103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~~--p~~~-------------~~~l~~~vG~~--~a~~~lllt 163 (239)
T PLN02267 103 GHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLPL--PDYF-------------MALLRAKIGSP--AARRDVLLR 163 (239)
T ss_pred CcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCCC--ChHH-------------HHHHHHHcChH--HHHHHHHHc
Confidence 9999999999999999 99985 567765444333210 1100 01122223322 22 244445
Q ss_pred CccccHHHHHHcCCceeeccC
Q 024202 249 DRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 249 ~~~lsa~EAle~GLID~I~~~ 269 (271)
+..|+++||+++||||+|.++
T Consensus 164 G~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 164 AAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred CCcCCHHHHHHCCCcceecCC
Confidence 778999999999999999863
No 101
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=1.1e-06 Score=79.56 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=90.0
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH---------------HHHHHHHHhhCCceEEEEeccc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV---------------LAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag---------------~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
++.++.+.+.+.|..++.++..+.|+|.= =|.|+++... ...+..|..+++||++.+.|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 106 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAA 106 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 67888899999999888765555444421 1334544321 1234456678899999999999
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCC---CCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG---GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~---G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
..+|.-++++||. |++.++++|.+.....|.. |-..- +.+.. ......+++-.+.
T Consensus 107 ~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~------------------l~~~~--G~~~a~~l~ltg~ 164 (249)
T PRK05870 107 VGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATWM------------------LQRAV--GPQVARAALLFGM 164 (249)
T ss_pred EchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcceee------------------HHhhh--CHHHHHHHHHhCC
Confidence 9999999999999 9999999987655443321 11100 11111 2233344444467
Q ss_pred cccHHHHHHcCCceeec
Q 024202 251 FLSAAEAMEFGLIDGIL 267 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~ 267 (271)
.++++||+++||||+|.
T Consensus 165 ~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 165 RFDAEAAVRHGLALMVA 181 (249)
T ss_pred ccCHHHHHHcCCHHHHH
Confidence 89999999999999986
No 102
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.51 E-value=3.3e-06 Score=80.73 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=91.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH------------------HHHHHHHHHhhCCceEEEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVC 169 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~a------------------g~~Iyd~I~~~~~pV~tvv 169 (271)
++.++...+...+..++.++..+.|+|.=. |-|+++.+ ...+++.|..+++||++.+
T Consensus 52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV 131 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV 131 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788899999999999887655555444221 22344332 1245566778899999999
Q ss_pred ecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 170 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 170 ~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
.|.|..+|.-|+++||. |++.++++|.+.....|.. -+.... .. +.+..|. .....++-.+
T Consensus 132 nG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl~---P~~Ggt-~r-----------LprlvG~--~rA~~llltG 192 (360)
T TIGR03200 132 NGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGSA---PIGGAT-DF-----------LPLMIGC--EQAMVSGTLC 192 (360)
T ss_pred CCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCC---CCccHH-HH-----------HHHhhCH--HHHHHHHHhC
Confidence 99999999999999999 9999999987755443321 110000 00 1111121 2222323335
Q ss_pred ccccHHHHHHcCCceeeccC
Q 024202 250 RFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~~~ 269 (271)
..|+++||++.||||+|.+.
T Consensus 193 e~~sA~EA~~~GLVd~VVp~ 212 (360)
T TIGR03200 193 EPWSAHKAKRLGIIMDVVPA 212 (360)
T ss_pred CcCcHHHHHHcCChheecCc
Confidence 68999999999999999764
No 103
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=2.3e-06 Score=77.92 Aligned_cols=132 Identities=20% Similarity=0.142 Sum_probs=88.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH----------------HHHHHHHHhhCCceEEEEecc
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag----------------~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
++.++...+.+.|..++ ++..+.|+|.= =|.|+++..- ..++..|..+++||++.+.|.
T Consensus 30 l~~~~~~~l~~~l~~~~-d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~ 108 (260)
T PRK07659 30 LDEPMLKELLQALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGP 108 (260)
T ss_pred CCHHHHHHHHHHHHHhc-CCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 77788889999888883 44444333321 1334554321 123445667789999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCC---CCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG---GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~---G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
|..+|.-++++||. |++.++++|.+.....|.. |...- +.+.. ......+++-.+
T Consensus 109 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------L~~~v--g~~~a~~l~ltg 166 (260)
T PRK07659 109 AAGLGLSIALTADY--VIADISAKLAMNFIGIGLIPDGGGHFF------------------LQKRV--GENKAKQIIWEG 166 (260)
T ss_pred eecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCCCCchhhh------------------HHHhc--CHHHHHHHHHhC
Confidence 99999999999999 9999999987655443321 11100 11112 234444555557
Q ss_pred ccccHHHHHHcCCceeec
Q 024202 250 RFLSAAEAMEFGLIDGIL 267 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~ 267 (271)
..++++||+++||||+|.
T Consensus 167 ~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 167 KKLSATEALDLGLIDEVI 184 (260)
T ss_pred CccCHHHHHHcCChHHHh
Confidence 889999999999999986
No 104
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.45 E-value=1.9e-06 Score=79.25 Aligned_cols=136 Identities=18% Similarity=0.232 Sum_probs=99.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH-------------HHHHHHHHhhCCceEEEEecccch
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-------------LAIYDCMSWIKPKVGTVCFGVAAS 175 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag-------------~~Iyd~I~~~~~pV~tvv~G~AAS 175 (271)
++..+...+.+++..+++++..+.|+|+= =|-|.++.+. +..++.+..+++||++-+.|.|-.
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Alg 140 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALG 140 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeec
Confidence 67788899999999999988777666652 1234444332 456777778899999999999999
Q ss_pred HHHHHHhcCCcCcEEeccCcEEeeecCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 176 QAAIILAGGEKGMRYAMPNARIMLNQPQSGS---GGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 176 aa~lIa~agdkg~R~a~PnS~imiHqp~~g~---~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
+|.-+++.||- |+|.|++.|+.-++..|. +|-..-+. ++ .|. .+..+++-.++.+
T Consensus 141 GG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~rl~--------------r~----vG~--s~Ale~~ltg~~~ 198 (290)
T KOG1680|consen 141 GGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQRLP--------------RI----VGK--SRALEMILTGRRL 198 (290)
T ss_pred cchhhhhhcce--EeccCCCeecccccccCCccCCCchhhHH--------------HH----hCh--HHHHHHHHhcCcc
Confidence 99999999999 999999999987776542 22221111 11 222 2233445557889
Q ss_pred cHHHHHHcCCceeeccCC
Q 024202 253 SAAEAMEFGLIDGILETE 270 (271)
Q Consensus 253 sa~EAle~GLID~I~~~~ 270 (271)
+++||++.|||++|...+
T Consensus 199 ~AqeA~~~GlVn~Vvp~~ 216 (290)
T KOG1680|consen 199 GAQEAKKIGLVNKVVPSG 216 (290)
T ss_pred cHHHHHhCCceeEeecch
Confidence 999999999999998753
No 105
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=6.3e-06 Score=74.98 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=86.3
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC------CcHHH------------------HHHHHHHHHhhCCceEEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLNCPG------GSIYS------------------VLAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPG------GsV~a------------------g~~Iyd~I~~~~~pV~tv 168 (271)
++.++...+.+.|..++.++..+.|+| .+.| +++.. ...+++.|..+++||++.
T Consensus 30 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 677888888888888876655444443 4444 33321 122445567778999999
Q ss_pred EecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhC
Q 024202 169 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTER 248 (271)
Q Consensus 169 v~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~ 248 (271)
+.|.|..+|.-++++||. |++.++++|.+-....|.. .+.... ..+ . ++.. ....+++-.
T Consensus 108 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~-~~l---~-~l~~----------~~a~~l~l~ 167 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGVA---PAIISL-TLL---P-RLSP----------RAAARYYLT 167 (260)
T ss_pred EcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCCC---CCcccc-hhH---H-hhhH----------HHHHHHHHh
Confidence 999999999999999999 9999999887644333321 111000 000 0 1100 111223334
Q ss_pred CccccHHHHHHcCCceeecc
Q 024202 249 DRFLSAAEAMEFGLIDGILE 268 (271)
Q Consensus 249 ~~~lsa~EAle~GLID~I~~ 268 (271)
+..++++||+++||||++.+
T Consensus 168 g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 168 GEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred CCccCHHHHHHcCCcccchH
Confidence 56789999999999999864
No 106
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.40 E-value=1.2e-05 Score=73.67 Aligned_cols=136 Identities=14% Similarity=0.183 Sum_probs=94.0
Q ss_pred cCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHH-------HHHHHHHHH---hhCCceEEEEecc
Q 024202 103 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS-------VLAIYDCMS---WIKPKVGTVCFGV 172 (271)
Q Consensus 103 ~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~a-------g~~Iyd~I~---~~~~pV~tvv~G~ 172 (271)
++++....|.++++..+.....+..++.. .-+|+-.+||||..+.. +..+...+. ..+.|+++++.|.
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~~--~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEKF--GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 34445567888888888777766655443 46899999999986421 234555444 4467999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|.|+|++.++.+|. .+|.|++.+.+-.|.+. .. +. +++ ....++..+.+ -+
T Consensus 147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~-----a~-------il-~~~----------~~~a~~aa~~~----~~ 197 (256)
T PRK12319 147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF-----AS-------IL-WKD----------GSRATEAAELM----KI 197 (256)
T ss_pred cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH-----HH-------HH-hcC----------cccHHHHHHHc----CC
Confidence 99999999999998 99999999988777431 00 00 000 01122233333 35
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
|+.++.+.|+||+|++.
T Consensus 198 ~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 198 TAGELLEMGVVDKVIPE 214 (256)
T ss_pred CHHHHHHCCCCcEecCC
Confidence 99999999999999863
No 107
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.39 E-value=6.4e-06 Score=74.74 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=95.4
Q ss_pred eeChhHHHHHHHHHHHHhccCCCCCEEEE----EeCCCCcHHHH----------------HHHHHHHHhhCCceEEEEec
Q 024202 112 PINSMVAQRAISQLVTLATIDEDADILMY----LNCPGGSIYSV----------------LAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 112 ~Id~~~a~~ii~~L~~l~~~~~~~~I~L~----INSPGGsV~ag----------------~~Iyd~I~~~~~pV~tvv~G 171 (271)
.++.++...+.+.|..++.++..+.|+|. .=|-|+++..- ..+...|+.+++||++.+.|
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 107 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG 107 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence 47888899999999998887555544432 12335555431 12667888899999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG-GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~-G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
.|..+|.-++++||. |++.++++|.+.....|.. |.-.- . .+.+..|. ....+++-.+.
T Consensus 108 ~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~~-----~-----------~l~r~~G~--~~a~~l~ltg~ 167 (257)
T COG1024 108 YALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGGT-----Q-----------RLPRLLGR--GRAKELLLTGE 167 (257)
T ss_pred eEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcHH-----H-----------HHHHhcCH--HHHHHHHHcCC
Confidence 999999999999999 9999999998876654432 11000 0 01111221 22223333467
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||++++.
T Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 168 PISAAEALELGLVDEVVPD 186 (257)
T ss_pred cCCHHHHHHcCCcCeeeCC
Confidence 8999999999999998763
No 108
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.37 E-value=9.3e-06 Score=76.53 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=93.8
Q ss_pred cCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHH---HHHhhCCceEEEEecc
Q 024202 103 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYD---CMSWIKPKVGTVCFGV 172 (271)
Q Consensus 103 ~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~-------ag~~Iyd---~I~~~~~pV~tvv~G~ 172 (271)
++++-...|.++++..+.....+..++.- .-+|+-.+||||..+. .+..+.. ++...+.|+++++.|.
T Consensus 122 ~e~~~~~~G~~~peg~rKa~R~m~lA~~f--~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe 199 (319)
T PRK05724 122 KEKIRRNFGMPRPEGYRKALRLMKMAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE 199 (319)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45555567888888887777766655443 4689999999996532 1233444 4446678999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|.|+|++.+..+|. .+|.|++.+.+-.|.+. + . +. +++ .. ..++..+ ..-+
T Consensus 200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg~----a-~-------Il-~~~---------~~-~a~~aae----~~~i 250 (319)
T PRK05724 200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEGC----A-S-------IL-WKD---------AS-KAPEAAE----AMKI 250 (319)
T ss_pred ccHHHHHHHhccCe--eeeecCceEeecCHHHH----H-H-------HH-hcC---------ch-hHHHHHH----HcCC
Confidence 99999999999998 99999999987777431 0 0 00 000 00 1122222 2347
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
|+.++++.|+||+|+..
T Consensus 251 ta~~l~~~g~iD~II~E 267 (319)
T PRK05724 251 TAQDLKELGIIDEIIPE 267 (319)
T ss_pred CHHHHHHCCCceEeccC
Confidence 99999999999999863
No 109
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.35 E-value=7.7e-06 Score=84.50 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=92.5
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-----eCCCCcHHH----------------HHHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL-----NCPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-----NSPGGsV~a----------------g~~Iyd~I~~~~~pV~tvv~G 171 (271)
++.++...+.+.|..++.++..+.|+|.= =|-|+++.. ...++..|..+++||++.+.|
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67788889999999888765555554421 134555542 133566788889999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccC--cEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 172 VAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~Pn--S~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
.|..+|.-++++||. |++.++ ++|.+.....|.. -+.... ..+.+..| .....+++-.+
T Consensus 106 ~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~---p~~g~~------------~~L~r~vG--~~~A~~llltG 166 (699)
T TIGR02440 106 ACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLL---PGSGGT------------QRLPRLIG--VSTALDMILTG 166 (699)
T ss_pred EeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCC---CCccHH------------HHHHHhcC--HHHHHHHHHcC
Confidence 999999999999999 999987 5666554443321 000000 00111122 22333444457
Q ss_pred ccccHHHHHHcCCceeeccC
Q 024202 250 RFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~~~ 269 (271)
..++++||+++||||+|.+.
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~ 186 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQ 186 (699)
T ss_pred CcCCHHHHHhCCCCcEecCh
Confidence 78999999999999999864
No 110
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.35 E-value=1e-05 Score=76.31 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=93.1
Q ss_pred cCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhhCCceEEEEecc
Q 024202 103 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGV 172 (271)
Q Consensus 103 ~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~-------ag~~Iyd~I---~~~~~pV~tvv~G~ 172 (271)
++++-...|..+++..+.....+..++.- .-+|+-.|||||..+. .+..|...+ ...+.|+++++.|-
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f--~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe 202 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALRLMKHANKF--GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE 202 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence 33333345778888777777766655443 4689999999997642 234555554 45668999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|.|+|++.++.+|. .+|.|++.+.+-.|.+. + .+ + | ++.+...+..+ -.-+
T Consensus 203 ggsGGAlal~~aD~--V~m~e~a~~sVisPEg~----a-~I------l----------~-----~d~~~a~~aA~-~~~i 253 (322)
T CHL00198 203 GGSGGALGIGIGDS--IMMLEYAVYTVATPEAC----A-AI------L----------W-----KDSKKSLDAAE-ALKI 253 (322)
T ss_pred ccHHHHHhhhcCCe--EEEeCCeEEEecCHHHH----H-HH------H----------h-----cchhhHHHHHH-HcCC
Confidence 99999999999998 99999999988777431 1 00 0 0 11122222222 2348
Q ss_pred cHHHHHHcCCceeecc
Q 024202 253 SAAEAMEFGLIDGILE 268 (271)
Q Consensus 253 sa~EAle~GLID~I~~ 268 (271)
|+++-+++|+||+|+.
T Consensus 254 ta~dL~~~giiD~ii~ 269 (322)
T CHL00198 254 TSEDLKVLGIIDEIIP 269 (322)
T ss_pred CHHHHHhCCCCeEecc
Confidence 9999999999999986
No 111
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.34 E-value=6.1e-06 Score=83.08 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=90.6
Q ss_pred eChhHHHHHHHHHHHHh-ccCCCCCEEEEEe-----CCCCcHHHH---------------H----HHHHHHHhhCCceEE
Q 024202 113 INSMVAQRAISQLVTLA-TIDEDADILMYLN-----CPGGSIYSV---------------L----AIYDCMSWIKPKVGT 167 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~-~~~~~~~I~L~IN-----SPGGsV~ag---------------~----~Iyd~I~~~~~pV~t 167 (271)
++.++...+.+.|..++ .++..+.|+|.=+ |.|+++..- . .+.+.|+.+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788888999998887 4555556565432 456655421 0 144566778899999
Q ss_pred EEecccchHHHHHHhcCCcCcEEeccC--cEEeeecCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 024202 168 VCFGVAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQ-SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQ 244 (271)
Q Consensus 168 vv~G~AASaa~lIa~agdkg~R~a~Pn--S~imiHqp~-~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~ 244 (271)
.+.|.|..+|..|+++||. |++.++ ++|.+-... .|.. .+..... + +...+........+
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~~~Gl~---P~~gg~~--------r----l~~~~~vg~~~A~~ 191 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVPLLGVL---PGTGGLT--------R----VTDKRKVRRDLADI 191 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccccC---CCcchHH--------H----hhhhhhcCHHHHHH
Confidence 9999999999999999999 999987 677553331 2211 1100000 0 11111123333344
Q ss_pred HhhCCccccHHHHHHcCCceeeccC
Q 024202 245 YTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 245 ~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
++-.+..++++||+++||||++.++
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~ 216 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKP 216 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCH
Confidence 4434678999999999999999864
No 112
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.34 E-value=1.1e-05 Score=83.58 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=93.4
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a------------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 110 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN 110 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 677888899999998887665555554321 34455532 11345567788899999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-|+++||. |++.++++|.+-....|.. -+..... .+.+..| .....+++-.+.
T Consensus 111 G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~---p~~g~~~------------~L~rlvG--~~~A~~llltG~ 171 (715)
T PRK11730 111 GYALGGGCECVLATDY--RVASPDARIGLPETKLGIM---PGFGGTV------------RLPRLIG--ADNALEWIAAGK 171 (715)
T ss_pred CEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCC---CCchHHH------------HHHHhcC--HHHHHHHHHcCC
Confidence 9999999999999999 9999999987755443321 1110000 0111122 223344444577
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|++.
T Consensus 172 ~~~A~eA~~~GLv~~vv~~ 190 (715)
T PRK11730 172 DVRAEDALKVGAVDAVVAP 190 (715)
T ss_pred cCCHHHHHHCCCCeEecCH
Confidence 8999999999999999864
No 113
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.33 E-value=1.2e-05 Score=75.70 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=93.6
Q ss_pred cCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhhCCceEEEEecc
Q 024202 103 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGV 172 (271)
Q Consensus 103 ~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~-------ag~~Iyd~I---~~~~~pV~tvv~G~ 172 (271)
++++-...|.++++..+....-+..++.- .-+|+-.+||||..+. .+..+...+ .....|+++++.|.
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~f--~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAERF--KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 44444556888888888777766655543 4689999999997632 133455555 45568999999999
Q ss_pred cchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 173 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 173 AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|+|+|++.+..+|. .+|.|++.+.+-.|.+. + .+ ..+ +. ...++..+. .-+
T Consensus 200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~----a-~I--l~k------d~----------~~a~~aae~----~~~ 250 (316)
T TIGR00513 200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGC----A-AI--LWK------DA----------SKAPKAAEA----MKI 250 (316)
T ss_pred cccHHHhhhccCCE--EEEecCceEEecCHHHH----H-HH--hcc------ch----------hhHHHHHHH----ccC
Confidence 99999999888998 99999999988777431 0 00 000 00 001222222 336
Q ss_pred cHHHHHHcCCceeeccC
Q 024202 253 SAAEAMEFGLIDGILET 269 (271)
Q Consensus 253 sa~EAle~GLID~I~~~ 269 (271)
|+.++++.|+||+|+..
T Consensus 251 ta~~l~~~G~iD~II~e 267 (316)
T TIGR00513 251 TAPDLKELGLIDSIIPE 267 (316)
T ss_pred CHHHHHHCCCCeEeccC
Confidence 89999999999999863
No 114
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.31 E-value=7.5e-06 Score=77.75 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=88.6
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEeCC-------CCcHHHH-------------------HHHHHHHHhhCCceE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLNCP-------GGSIYSV-------------------LAIYDCMSWIKPKVG 166 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSP-------GGsV~ag-------------------~~Iyd~I~~~~~pV~ 166 (271)
++..+...+.+.+..++.++..+.|+| .+. |+++..- ..++..|..+++||+
T Consensus 27 l~~~m~~~L~~~l~~~~~d~~vrvvVl--tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (342)
T PRK05617 27 LSLEMIRAIDAALDAWEDDDAVAAVVI--EGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYI 104 (342)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEE--EcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 778888889888888876654444443 333 4444320 124456778889999
Q ss_pred EEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 024202 167 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS---GGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243 (271)
Q Consensus 167 tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~---~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~ 243 (271)
+.+.|.|..+|.-++++||. |++.++++|.+-....|. .|...-+. +..| ....
T Consensus 105 AaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L~------------------r~~g---~~a~ 161 (342)
T PRK05617 105 ALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFLS------------------RAPG---ALGT 161 (342)
T ss_pred EEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEeh------------------hccc---HHHH
Confidence 99999999999999999999 999999998765544332 12111111 0001 0112
Q ss_pred HHhhCCccccHHHHHHcCCceeeccC
Q 024202 244 QYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 244 ~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
+++=.+..++++||+++||||++++.
T Consensus 162 ~llltG~~i~A~eA~~~GLv~~vv~~ 187 (342)
T PRK05617 162 YLALTGARISAADALYAGLADHFVPS 187 (342)
T ss_pred HHHHcCCCCCHHHHHHcCCcceecCH
Confidence 23334677999999999999999864
No 115
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.30 E-value=1.2e-05 Score=78.01 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=87.3
Q ss_pred ceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHHH---HhhCCceEEEEecccchHHHHH
Q 024202 111 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGVAASQAAII 180 (271)
Q Consensus 111 g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~-------ag~~Iyd~I---~~~~~pV~tvv~G~AASaa~lI 180 (271)
|.++++..+.....+..++.- .-+|+-.|||||..+. .+.+|...+ ...+.|+++++.|-+.|+|++.
T Consensus 200 G~~~peGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 556677777776666555443 4689999999997542 134455544 4556899999999999999999
Q ss_pred HhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHc
Q 024202 181 LAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEAMEF 260 (271)
Q Consensus 181 a~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EAle~ 260 (271)
+++||. .+|.|++.+.+-.|.+. + .+ .+ ++. .. .++..+ ..-+|+.++++.
T Consensus 278 lg~aD~--VlMle~A~ysVisPEga----A-sI--Lw------kd~---------~~-A~eAAe----alkitA~dL~~~ 328 (431)
T PLN03230 278 IGCGNR--MLMMENAVYYVASPEAC----A-AI--LW------KSA---------AA-APKAAE----ALRITAAELVKL 328 (431)
T ss_pred hhcCCE--EEEecCCEEEecCHHHH----H-HH--Hh------ccc---------cc-hHHHHH----HcCCCHHHHHhC
Confidence 999998 99999999877766421 0 00 00 000 00 111112 235899999999
Q ss_pred CCceeeccC
Q 024202 261 GLIDGILET 269 (271)
Q Consensus 261 GLID~I~~~ 269 (271)
|+||+|+..
T Consensus 329 GiID~II~E 337 (431)
T PLN03230 329 GVVDEIVPE 337 (431)
T ss_pred CCCeEeccC
Confidence 999999863
No 116
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.29 E-value=1.7e-05 Score=77.08 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=91.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------H----H---HHHHHHhhCCceEEEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------L----A---IYDCMSWIKPKVGTVC 169 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag------------~----~---Iyd~I~~~~~pV~tvv 169 (271)
++.++...+.+.|..++.++..+.|+|.=+ |-||++.+- . . +...|..+++||++.+
T Consensus 61 Ls~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v 140 (401)
T PLN02157 61 LTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAIL 140 (401)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 688889999999998887766555554321 557776421 0 1 2234777889999999
Q ss_pred ecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 170 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 170 ~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
.|.|..+|.-|+++||. |++.++++|.+-....|.. -+..-. ..+.+ + .|. .-..++=.+
T Consensus 141 ~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl~---Pd~G~s-~~L~r----l-------~G~---~a~~L~LTG 200 (401)
T PLN02157 141 NGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGFH---PDAGAS-FNLSH----L-------PGR---LGEYLGLTG 200 (401)
T ss_pred eCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCCC---CCccHH-HHHHH----h-------hhH---HHHHHHHcC
Confidence 99999999999999999 9999999886655443321 121111 00111 1 111 011222236
Q ss_pred ccccHHHHHHcCCceeeccC
Q 024202 250 RFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~~~ 269 (271)
..++++||+++||||+++..
T Consensus 201 ~~i~A~eA~~~GLv~~vVp~ 220 (401)
T PLN02157 201 LKLSGAEMLACGLATHYIRS 220 (401)
T ss_pred CcCCHHHHHHcCCceEEeCH
Confidence 78999999999999999864
No 117
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.29 E-value=1.8e-05 Score=81.94 Aligned_cols=138 Identities=13% Similarity=0.155 Sum_probs=93.7
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHH------------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYS------------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~a------------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++...+.+.|..++.++..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+.
T Consensus 31 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~ 110 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAIN 110 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 677888899999998887766665554321 23444421 23466778888999999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCc
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDR 250 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~ 250 (271)
|.|..+|.-|+++||. |++.++++|.+-....|.. -...-. .. +.+..|. ....+++-.+.
T Consensus 111 G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~---Pg~Ggt----~r--------L~rliG~--~~A~~llltG~ 171 (714)
T TIGR02437 111 GIALGGGCECVLATDF--RIADDTAKIGLPETKLGIM---PGFGGT----VR--------LPRVIGA--DNALEWIASGK 171 (714)
T ss_pred CeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCC---CCccHH----HH--------HHHHhCH--HHHHHHHHcCC
Confidence 9999999999999999 9999999987755443321 000000 00 1111122 22233444467
Q ss_pred cccHHHHHHcCCceeeccC
Q 024202 251 FLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 251 ~lsa~EAle~GLID~I~~~ 269 (271)
.++++||+++||||+|.+.
T Consensus 172 ~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 172 ENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred cCCHHHHHHCCCCcEeeCh
Confidence 7999999999999999764
No 118
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.28 E-value=1.7e-05 Score=76.41 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=92.3
Q ss_pred EEEcce-----eChhHHHHHHHHHHHHhccCCCCCEEEEE----eCCCCcHHHH----------H-------HHHHHHHh
Q 024202 107 IFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV----------L-------AIYDCMSW 160 (271)
Q Consensus 107 I~l~g~-----Id~~~a~~ii~~L~~l~~~~~~~~I~L~I----NSPGGsV~ag----------~-------~Iyd~I~~ 160 (271)
|.|+-| ++.++...+.+.|..++.++.++.|+|.= =|-||++... . .+...|..
T Consensus 24 ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 103 (379)
T PLN02874 24 ITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHT 103 (379)
T ss_pred EEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHh
Confidence 445554 78888999999999888766555444421 1335554321 0 11234667
Q ss_pred hCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 024202 161 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIE 240 (271)
Q Consensus 161 ~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e 240 (271)
+++||++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. -+.... ..+. ++....
T Consensus 104 ~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl~---p~~g~~-~~L~----rl~g~~--------- 164 (379)
T PLN02874 104 YKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGFH---TDCGFS-YILS----RLPGHL--------- 164 (379)
T ss_pred CCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCcC---CChhHH-HHHH----hhhHHH---------
Confidence 78999999999999999999999999 9999999887655444322 111111 0011 111100
Q ss_pred HHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 241 KVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 241 ~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
-.+++=.+..++++||+++||||+|++.
T Consensus 165 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 192 (379)
T PLN02874 165 -GEYLALTGARLNGKEMVACGLATHFVPS 192 (379)
T ss_pred -HHHHHHcCCcccHHHHHHcCCccEEeCH
Confidence 1122223678999999999999999864
No 119
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.26 E-value=2.9e-05 Score=75.54 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=95.3
Q ss_pred cEEEEcce-----eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHH------------H-------HHHH
Q 024202 105 RIIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSV------------L-------AIYD 156 (271)
Q Consensus 105 rII~l~g~-----Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag------------~-------~Iyd 156 (271)
++|.|+-| ++.++...+.+.|..++.++..+.|+|.=+ |-||++... . .+..
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 132 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY 132 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 45667666 888999999999999988766655544322 346665321 1 1223
Q ss_pred HHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 024202 157 CMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTG 236 (271)
Q Consensus 157 ~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG 236 (271)
.|..+++|+++.+.|.|..+|.-|+++||. |++.++++|.+-....|.. -++... -.+.++. |
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl~---PdvG~s-~~L~rl~-----------g 195 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGFH---PDAGAS-YYLSRLP-----------G 195 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCCC---CCccHH-HHHHHhc-----------C
Confidence 455678999999999999999999999999 9999999887655443322 111110 0111111 1
Q ss_pred CCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 237 QPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 237 ~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
.. -..++=.+..++++||++.||+|.++.+
T Consensus 196 ~~---g~~L~LTG~~i~a~eA~~~GLa~~~v~~ 225 (407)
T PLN02851 196 YL---GEYLALTGQKLNGVEMIACGLATHYCLN 225 (407)
T ss_pred HH---HHHHHHhCCcCCHHHHHHCCCceeecCH
Confidence 10 0112223567999999999999999865
No 120
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.25 E-value=3e-05 Score=74.82 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=89.9
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe----CCCCcHHHHH-------------------HHHHHHHhhCCceEEEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIYSVL-------------------AIYDCMSWIKPKVGTVC 169 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN----SPGGsV~ag~-------------------~Iyd~I~~~~~pV~tvv 169 (271)
++.++...+.+.|..++.++..+.|+|.=+ |-||++.... .+...|..+++||++.+
T Consensus 33 Ls~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v 112 (381)
T PLN02988 33 LSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSIL 112 (381)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 778899999999999887665555544321 3466664310 12235677889999999
Q ss_pred ecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 170 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 170 ~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
.|.|..+|.-|+++||. |++.++++|.+-....|.. -+..-. ..+.+ +....+ ..++=-+
T Consensus 113 ~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl~---Pd~G~s-~~L~r----l~G~~~----------~~l~LTG 172 (381)
T PLN02988 113 NGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGLF---PDVGAS-YFLSR----LPGFFG----------EYVGLTG 172 (381)
T ss_pred cCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCcC---CCccHH-HHHHH----HHHHHH----------HHHHHcC
Confidence 99999999999999999 9999999886544333321 111110 01111 111111 1122235
Q ss_pred ccccHHHHHHcCCceeeccC
Q 024202 250 RFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~~~ 269 (271)
..++++||++.||||++++.
T Consensus 173 ~~i~a~eA~~~GLv~~vv~~ 192 (381)
T PLN02988 173 ARLDGAEMLACGLATHFVPS 192 (381)
T ss_pred CCCCHHHHHHcCCceEecCH
Confidence 67999999999999999864
No 121
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.24 E-value=2.7e-05 Score=80.61 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=92.1
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhhCCceEEEEec
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~a----------------g~~Iyd~I~~~~~pV~tvv~G 171 (271)
++.++.+.+.+.|..++.++..+.|+|.=. |-|+++.. ...+++.|..+++||++.+.|
T Consensus 31 l~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 110 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHG 110 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677888889998988887654444444311 33444421 123567788889999999999
Q ss_pred ccchHHHHHHhcCCcCcEEeccCc--EEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Q 024202 172 VAASQAAIILAGGEKGMRYAMPNA--RIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERD 249 (271)
Q Consensus 172 ~AASaa~lIa~agdkg~R~a~PnS--~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~ 249 (271)
.|..+|.-++++||. |++.+++ +|.+.....|.. -+..-. ..+.+..| .....+++-.+
T Consensus 111 ~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~---p~~gg~------------~~L~r~vG--~~~A~~llltG 171 (708)
T PRK11154 111 ACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLL---PGSGGT------------QRLPRLIG--VSTALDMILTG 171 (708)
T ss_pred eeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCC---CCccHH------------hHHHhhcC--HHHHHHHHHhC
Confidence 999999999999999 9999975 676655444321 010000 00111122 23334445457
Q ss_pred ccccHHHHHHcCCceeeccC
Q 024202 250 RFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 250 ~~lsa~EAle~GLID~I~~~ 269 (271)
..++++||+++||||++++.
T Consensus 172 ~~i~a~eA~~~GLv~~vv~~ 191 (708)
T PRK11154 172 KQLRAKQALKLGLVDDVVPH 191 (708)
T ss_pred CcCCHHHHHHCCCCcEecCh
Confidence 78999999999999999864
No 122
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.22 E-value=1.7e-05 Score=79.83 Aligned_cols=140 Identities=12% Similarity=0.123 Sum_probs=88.8
Q ss_pred eChhHHHHHHHHHHHHh-ccCCCCCEEEEEe-----CCCCcHHHH-------------------HHHHHHHHhhCCceEE
Q 024202 113 INSMVAQRAISQLVTLA-TIDEDADILMYLN-----CPGGSIYSV-------------------LAIYDCMSWIKPKVGT 167 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~-~~~~~~~I~L~IN-----SPGGsV~ag-------------------~~Iyd~I~~~~~pV~t 167 (271)
++.++...+.+.|..++ .++..+.|+|.-. |.|+++... ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67778888889898887 4554555555432 556765431 1244566778899999
Q ss_pred EEecccchHHHHHHhcCCcCcEEeccC--cEEeeecCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 024202 168 VCFGVAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQ-SGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQ 244 (271)
Q Consensus 168 vv~G~AASaa~lIa~agdkg~R~a~Pn--S~imiHqp~-~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~ 244 (271)
.+.|.|..+|.-++++||. |++.++ ++|.+-... .|. .-+.... .. +............+
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~~lGl---~P~~gg~----~~--------l~~~~~vg~~~A~~ 187 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVPLLGV---LPGTGGL----TR--------VTDKRRVRRDHADI 187 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccCc---CCccchh----hh--------ccccchhCHHHHHH
Confidence 9999999999999999999 999986 566553221 221 1110000 00 00000112223333
Q ss_pred HhhCCccccHHHHHHcCCceeeccC
Q 024202 245 YTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 245 ~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
++-.++.++++||+++||||+|++.
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~ 212 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKP 212 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeCh
Confidence 3334567999999999999999864
No 123
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.14 E-value=4.3e-05 Score=79.45 Aligned_cols=134 Identities=12% Similarity=0.136 Sum_probs=90.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEEe------CCCCcHHH----------------HHHHHHHHHhhCCceEEEEe
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYS----------------VLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN------SPGGsV~a----------------g~~Iyd~I~~~~~pV~tvv~ 170 (271)
++.++...+.+.|..++.++..+.++| +. |-|+++.. ...+++.|..+++||++.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~vVv-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSAVL-ISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEEEE-EECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 667888889999998877654443333 23 33455432 23467778888999999999
Q ss_pred cccchHHHHHHhcCCcCcEEeccCc--EEeeecCCCCCC---CCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 024202 171 GVAASQAAIILAGGEKGMRYAMPNA--RIMLNQPQSGSG---GHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQY 245 (271)
Q Consensus 171 G~AASaa~lIa~agdkg~R~a~PnS--~imiHqp~~g~~---G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~ 245 (271)
|.|..+|.-++++||. |++.+++ +|.+.....|.. |-..- +.+..|. ....++
T Consensus 117 G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~Pg~Ggt~r------------------LprliG~--~~A~~l 174 (737)
T TIGR02441 117 GSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLLPGAGGTQR------------------LPKLTGV--PAALDM 174 (737)
T ss_pred CEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCCCCccHhhh------------------HHHhhCH--HHHHHH
Confidence 9999999999999999 9999884 666554433321 11100 1111222 222344
Q ss_pred hhCCccccHHHHHHcCCceeeccC
Q 024202 246 TERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 246 ~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
+-.+..++++||+++||||+|.+.
T Consensus 175 ~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 175 MLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred HHcCCcCCHHHHHHCCCCeEecCC
Confidence 445778999999999999999864
No 124
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.13 E-value=8.6e-05 Score=67.46 Aligned_cols=130 Identities=14% Similarity=0.193 Sum_probs=83.6
Q ss_pred eeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCc----------HHHHHHHHHHHHhh---CCceEEEEecccchHHH
Q 024202 112 PINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS----------IYSVLAIYDCMSWI---KPKVGTVCFGVAASQAA 178 (271)
Q Consensus 112 ~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGs----------V~ag~~Iyd~I~~~---~~pV~tvv~G~AASaa~ 178 (271)
.++..-+.+....+..+...+..-+|+..+|+||=. ..+.-.+.+++... +.|+++++.|.+.|+|+
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~ 123 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAF 123 (238)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHH
Confidence 355455556655555542222457999999999954 33333344455544 48999999999999999
Q ss_pred HHHh-cCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh--CCccccHH
Q 024202 179 IILA-GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTE--RDRFLSAA 255 (271)
Q Consensus 179 lIa~-agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~--~~~~lsa~ 255 (271)
+.+. .+|. .++.|++.+.+..|.+. ++.+.++.++.++..+ ...-.+++
T Consensus 124 lamg~~ad~--v~Alp~A~i~vm~~e~a--------------------------a~I~~~~~~~~~e~a~~~~~~a~~~~ 175 (238)
T TIGR03134 124 LAHGLQADR--IIALPGAMVHVMDLESM--------------------------ARVTKRSVEELEALAKSSPVFAPGIE 175 (238)
T ss_pred HHHccCcCe--EEEcCCcEEEecCHHHH--------------------------HHHHccCHhHHHHHHHhhhhhccCHH
Confidence 8885 3776 99999999877665321 0001122233333322 12446788
Q ss_pred HHHHcCCceeeccC
Q 024202 256 EAMEFGLIDGILET 269 (271)
Q Consensus 256 EAle~GLID~I~~~ 269 (271)
.+.+.|+||+|++.
T Consensus 176 ~~~~~G~vd~vi~~ 189 (238)
T TIGR03134 176 NFVKLGGVHALLDV 189 (238)
T ss_pred HHHhCCCccEEeCC
Confidence 89999999999874
No 125
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.12 E-value=3.5e-05 Score=79.04 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=88.1
Q ss_pred EEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-------HHHHHHHHHH---hhCCceEEEEecccchHH
Q 024202 108 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGVAASQA 177 (271)
Q Consensus 108 ~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~-------ag~~Iyd~I~---~~~~pV~tvv~G~AASaa 177 (271)
...|.+++...+.....+..++.- .-+|+-.|||||..+. .+.+|...+. ....|+++++.|-|+|+|
T Consensus 218 rnfG~~~peGyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGG 295 (762)
T PLN03229 218 RNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGG 295 (762)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHH
Confidence 345556666666666655554433 4689999999998752 2445655555 556899999999999999
Q ss_pred HHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Q 024202 178 AIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257 (271)
Q Consensus 178 ~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EA 257 (271)
++.++.+|. .+|.|++.+.+-.|.+. + .+. | ++.+...+..+ ..-+||++-
T Consensus 296 AlA~g~aD~--VlMle~A~~sVisPEga----A--------sIL---------w-----kd~~~A~eAAe-~lkiTa~dL 346 (762)
T PLN03229 296 ALAIGCANK--LLMLENAVFYVASPEAC----A--------AIL---------W-----KSAKAAPKAAE-KLRITAQEL 346 (762)
T ss_pred HHHhhcCCE--EEEecCCeEEecCHHHH----H--------HHH---------h-----cCcccHHHHHH-HcCCCHHHH
Confidence 999999998 99999998877666321 0 000 0 01111111121 234899999
Q ss_pred HHcCCceeecc
Q 024202 258 MEFGLIDGILE 268 (271)
Q Consensus 258 le~GLID~I~~ 268 (271)
+++|+||+|+.
T Consensus 347 ~~lGiiD~IIp 357 (762)
T PLN03229 347 CRLQIADGIIP 357 (762)
T ss_pred HhCCCCeeecc
Confidence 99999999986
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.94 E-value=0.00014 Score=73.30 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=90.0
Q ss_pred eChhHHHHHHHHHHHHhcc-CCCCCEEEEEe-----CCCCcHH-----------HH----HHHHHHHHhhCCceEEEE-e
Q 024202 113 INSMVAQRAISQLVTLATI-DEDADILMYLN-----CPGGSIY-----------SV----LAIYDCMSWIKPKVGTVC-F 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~-~~~~~I~L~IN-----SPGGsV~-----------ag----~~Iyd~I~~~~~pV~tvv-~ 170 (271)
++.++...+.+.+..++.+ +..+.|+|.=. |-|+++. .. ..+++.|..+++||++.+ .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 6778888899999888754 33333333211 2233331 11 125667888899999999 8
Q ss_pred cccchHH-HHHHhcCCcCcEEe-------ccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh-CCCHHH
Q 024202 171 GVAASQA-AIILAGGEKGMRYA-------MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFT-GQPIEK 241 (271)
Q Consensus 171 G~AASaa-~lIa~agdkg~R~a-------~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~t-G~~~e~ 241 (271)
|.|..+| .=++++||. |++ .++++|.+-....|..-..--.. .+.+.. |.+...
T Consensus 375 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~---------------~L~~~v~G~~~a~ 437 (546)
T TIGR03222 375 GSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGLS---------------RLATRFYAEPAPV 437 (546)
T ss_pred CeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcHH---------------HHHHHhcCchhHH
Confidence 9999999 999999999 999 89999877665544321110000 112222 333222
Q ss_pred HHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 242 VQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 242 i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
-.+++-.+..++++||+++|||++|.+.
T Consensus 438 ~~~~~ltg~~i~A~eA~~~Glv~~vv~~ 465 (546)
T TIGR03222 438 AAVRDKIGQALDAEEAERLGLVTAAPDD 465 (546)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcccccCc
Confidence 2222223678999999999999999765
No 127
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.90 E-value=8e-05 Score=74.51 Aligned_cols=142 Identities=17% Similarity=0.229 Sum_probs=94.8
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCC----------cHHHHHHHHHHHHhhCCceEEEEecccchHHH
Q 024202 109 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG----------SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 178 (271)
Q Consensus 109 l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGG----------sV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~ 178 (271)
.+|.++...++.+...+..++.. .-+|+..+||||= .+..+-.+..++.....|+++++.|.++++|+
T Consensus 327 ~~G~~~~~~~~K~~r~i~~a~~~--~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~ 404 (512)
T TIGR01117 327 MAGCLDIDSSDKIARFIRFCDAF--NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAY 404 (512)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHH
Confidence 45789999999988877765543 4689999999995 34566667777777789999999999999988
Q ss_pred HHHhc----CCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccH
Q 024202 179 IILAG----GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSA 254 (271)
Q Consensus 179 lIa~a----gdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa 254 (271)
+.+++ +|. .++.|++.+.+-.|.+.. .+. +.+++.+..+. .+. -.+++.+..+ .+.++
T Consensus 405 ~am~~~~~~~d~--~~a~p~a~~~v~~pe~a~-----~i~-~~~~l~~~~~~-----~~~---~~~~~~~~~~--~~~~~ 466 (512)
T TIGR01117 405 LAMCSKHLGADQ--VYAWPTAEIAVMGPAGAA-----NII-FRKDIKEAKDP-----AAT---RKQKIAEYRE--EFANP 466 (512)
T ss_pred HHhccccCCCCE--EEEcCCCeEeecCHHHHH-----HHH-hhhhcccccCH-----HHH---HHHHHHHHHH--hhcCH
Confidence 77764 665 899999999888775421 100 00111000000 000 0122333332 35688
Q ss_pred HHHHHcCCceeeccCC
Q 024202 255 AEAMEFGLIDGILETE 270 (271)
Q Consensus 255 ~EAle~GLID~I~~~~ 270 (271)
..+.+.|+||+|++.+
T Consensus 467 ~~~a~~g~vD~VI~P~ 482 (512)
T TIGR01117 467 YKAAARGYVDDVIEPK 482 (512)
T ss_pred HHHHhcCCCCeeEChH
Confidence 8999999999998753
No 128
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.77 E-value=0.00025 Score=71.61 Aligned_cols=137 Identities=14% Similarity=0.103 Sum_probs=87.4
Q ss_pred eChhHHHHHHHHHHHHhc-cCCCCCEEEEE-----eCCCCcHH-----------HH----HHHHHHHHhhCCceEEEEe-
Q 024202 113 INSMVAQRAISQLVTLAT-IDEDADILMYL-----NCPGGSIY-----------SV----LAIYDCMSWIKPKVGTVCF- 170 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~-~~~~~~I~L~I-----NSPGGsV~-----------ag----~~Iyd~I~~~~~pV~tvv~- 170 (271)
++.++...+.+.|..++. ++..+.|+|.= =|-|+++. .. ..++..|..+++||++.+.
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~ 378 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP 378 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 577888888888888875 34444444422 12234421 00 1244567777899999997
Q ss_pred cccchHH-HHHHhcCCcCcEEec-------cCcEEeeecCCCCCC---CCchhhHHHHHHHHHHHHHHHHHHHHH-hCCC
Q 024202 171 GVAASQA-AIILAGGEKGMRYAM-------PNARIMLNQPQSGSG---GHVEDVKRQVNEAVISRHKIDRMYAAF-TGQP 238 (271)
Q Consensus 171 G~AASaa-~lIa~agdkg~R~a~-------PnS~imiHqp~~g~~---G~~~di~~~~~el~~~~~~i~~iya~~-tG~~ 238 (271)
|.|..+| .-|+++||. |++. |+++|.+-....|.. |-..- +.++ .|..
T Consensus 379 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~------------------L~r~~vG~~ 438 (550)
T PRK08184 379 GSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLSR------------------LARRFYGEP 438 (550)
T ss_pred CceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHHH------------------hHHHhcChH
Confidence 9999999 999999999 9999 999987766544432 11111 1111 1322
Q ss_pred HHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 239 IEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 239 ~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
...-..++-.+..++++||+++||||+|.++
T Consensus 439 ~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~ 469 (550)
T PRK08184 439 DPLAAVRAKIGQPLDADAAEELGLVTAAPDD 469 (550)
T ss_pred HHHHHHHHHhCCcCCHHHHHHcCCcccccCh
Confidence 1111111123578999999999999999864
No 129
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.42 E-value=0.0004 Score=69.14 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=91.2
Q ss_pred cceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhhCCceEEEEecccchHHHH
Q 024202 110 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 179 (271)
Q Consensus 110 ~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPG----------GsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~l 179 (271)
.|.++.+.+.....-+..++.. .-+|+..+|+|| |.+..+-.+.+++...+.|+.+++.|.+.++|++
T Consensus 307 ~G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~ 384 (493)
T PF01039_consen 307 AGALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYY 384 (493)
T ss_dssp GGEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchh
Confidence 3789999888887777766653 358999999999 6677889999999999999999999999999888
Q ss_pred HHhcCCcC--cEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Q 024202 180 ILAGGEKG--MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAEA 257 (271)
Q Consensus 180 Ia~agdkg--~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~EA 257 (271)
.+++...+ ..++.|++.+.+..|.+.. .+. +.+++......=.+.-++ ..+.+++..+ ...++..|
T Consensus 385 am~~~~~~~~~~~Awp~a~~~vm~~e~a~-----~i~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~ 452 (493)
T PF01039_consen 385 AMCGRGYGPDFVFAWPTAEIGVMGPEGAA-----SIL-YRDELEAAEAEGADPEAQ----RAEKIAEYED--ELSSPYRA 452 (493)
T ss_dssp HTTGGGGTTSEEEEETT-EEESS-HHHHH-----HHH-THHHHHHSCHCCHSHHHH----HHHHHHHHHH--HHSSHHHH
T ss_pred hhcccccchhhhhhhhcceeeecChhhhh-----eee-ehhhhhhhhcccchhHHH----HHHHHHHHHH--hcCCHHHH
Confidence 88776222 3889999999877764321 110 000110000000000000 1122333222 34578899
Q ss_pred HHcCCceeeccCC
Q 024202 258 MEFGLIDGILETE 270 (271)
Q Consensus 258 le~GLID~I~~~~ 270 (271)
.+.|++|.|++.+
T Consensus 453 a~~~~~D~ii~p~ 465 (493)
T PF01039_consen 453 ASRGYVDDIIDPA 465 (493)
T ss_dssp HHTTSSSEESSGG
T ss_pred HhcCCCCCccCHH
Confidence 9999999998763
No 130
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.37 E-value=0.0016 Score=66.03 Aligned_cols=92 Identities=15% Similarity=0.064 Sum_probs=69.5
Q ss_pred cceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCc----------HHHHHHHHHHHHhhCCceEEEEecccchHHHH
Q 024202 110 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS----------IYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 179 (271)
Q Consensus 110 ~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGs----------V~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~l 179 (271)
+|.++.+.++....-+...+.- .-+|+..+|+||-. +..+-.+..++.....|+.+++.|.|.++|++
T Consensus 379 ~g~l~~~~a~Kaarfi~lc~~~--~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~ 456 (569)
T PLN02820 379 NGILFTESALKGAHFIELCAQR--GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNY 456 (569)
T ss_pred CCccCHHHHHHHHHHHHHHHhc--CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHH
Confidence 4668888877776666655543 45899999999943 45566777777788899999999999999999
Q ss_pred HHhcCCc--CcEEeccCcEEeeecCC
Q 024202 180 ILAGGEK--GMRYAMPNARIMLNQPQ 203 (271)
Q Consensus 180 Ia~agdk--g~R~a~PnS~imiHqp~ 203 (271)
.+++... ...++.|++.+.+..|.
T Consensus 457 aM~g~~~~~d~~~awp~A~i~vmg~e 482 (569)
T PLN02820 457 GMCGRAYSPNFLFMWPNARIGVMGGA 482 (569)
T ss_pred HhcCcCCCCCEEEECCCCeEEecCHH
Confidence 9974321 23788899999777664
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.37 E-value=0.0028 Score=59.31 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=69.0
Q ss_pred EEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHH-------HHHHHH---hhCCceEEEEecccchH
Q 024202 107 IFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA-------IYDCMS---WIKPKVGTVCFGVAASQ 176 (271)
Q Consensus 107 I~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~-------Iyd~I~---~~~~pV~tvv~G~AASa 176 (271)
-|.+|.++...++.+...+...... .-+++...+|+|....++.. +...+. ....|.++++.|-|..+
T Consensus 131 ~f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG 208 (292)
T PRK05654 131 SFMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGG 208 (292)
T ss_pred ccccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchH
Confidence 3578999999999999988776554 35888899999987666542 222332 33479999999988888
Q ss_pred HHHHH-hcCCcCcEEeccCcEEeeecC
Q 024202 177 AAIIL-AGGEKGMRYAMPNARIMLNQP 202 (271)
Q Consensus 177 a~lIa-~agdkg~R~a~PnS~imiHqp 202 (271)
+++.+ +.+|. +++.|++.+.+-.|
T Consensus 209 ~aas~a~~~D~--iia~p~A~ig~aGp 233 (292)
T PRK05654 209 VSASFAMLGDI--IIAEPKALIGFAGP 233 (292)
T ss_pred HHHHHHHcCCE--EEEecCcEEEecCH
Confidence 77664 45887 89999999987665
No 132
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.33 E-value=0.0027 Score=59.21 Aligned_cols=125 Identities=16% Similarity=0.223 Sum_probs=87.2
Q ss_pred EEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHH-------HHHHHH---hhCCceEEEEecccchHH
Q 024202 108 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA-------IYDCMS---WIKPKVGTVCFGVAASQA 177 (271)
Q Consensus 108 ~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~-------Iyd~I~---~~~~pV~tvv~G~AASaa 177 (271)
|.+|.+.....+.+...++.+... .-+++...+|+|....++.. +...+. ....|.++++.|-|..++
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~ 208 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV 208 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 568999999999999988776543 45899999999987665542 222222 234699999999988887
Q ss_pred HHHH-hcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHH
Q 024202 178 AIIL-AGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFLSAAE 256 (271)
Q Consensus 178 ~lIa-~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~lsa~E 256 (271)
++.+ +.+|. +++.|++.+++..|.. +.+.++. ++ . +.+-+++-
T Consensus 209 aas~a~~~D~--iia~p~A~ig~aGprV--------------------------ie~ti~e---~l----p-e~~q~ae~ 252 (285)
T TIGR00515 209 SASFAMLGDL--NIAEPKALIGFAGPRV--------------------------IEQTVRE---KL----P-EGFQTSEF 252 (285)
T ss_pred HHHHHhCCCE--EEEECCeEEEcCCHHH--------------------------HHHHhcC---cc----c-hhcCCHHH
Confidence 7766 48887 8999999997755520 1111221 11 1 22557777
Q ss_pred HHHcCCceeeccCC
Q 024202 257 AMEFGLIDGILETE 270 (271)
Q Consensus 257 Ale~GLID~I~~~~ 270 (271)
+.+.|+||.|++.+
T Consensus 253 ~~~~G~vD~iv~~~ 266 (285)
T TIGR00515 253 LLEHGAIDMIVHRP 266 (285)
T ss_pred HHhCCCCcEEECcH
Confidence 88889999998753
No 133
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.13 E-value=0.00082 Score=60.81 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 024202 150 SVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDR 229 (271)
Q Consensus 150 ag~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~ 229 (271)
.-+.-|..|..+++||++-+-|.|-.+|.=+..|||. ||+..++.|-+...-.| -+.|+.. ++++-+.+
T Consensus 114 ~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvg---laADvGT----L~RlpkvV-- 182 (292)
T KOG1681|consen 114 RYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVG---LAADVGT----LNRLPKVV-- 182 (292)
T ss_pred HHHHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeee---hhhchhh----HhhhhHHh--
Confidence 3455677788888999999999999999999999999 99999999988776543 3344332 22222111
Q ss_pred HHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccCC
Q 024202 230 MYAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILETE 270 (271)
Q Consensus 230 iya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~~ 270 (271)
| +...+.++.-..+-|++.||+++|||-+|..++
T Consensus 183 ------G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk 216 (292)
T KOG1681|consen 183 ------G-NQSLARELAFTARKFSADEALDSGLVSRVFPDK 216 (292)
T ss_pred ------c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence 1 112233333335678999999999999998764
No 134
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.09 E-value=0.0015 Score=60.74 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=88.0
Q ss_pred CCCcchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcH-------HHHHHHHHHH---HhhCC
Q 024202 94 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI-------YSVLAIYDCM---SWIKP 163 (271)
Q Consensus 94 ~~dl~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV-------~ag~~Iyd~I---~~~~~ 163 (271)
.-|.-+++.++ ++.+ .++-...-++-+..++. =.-+|+.+||+||--. -.+.+|...+ -.++.
T Consensus 117 G~dtk~~~~rN----FGm~-~PeGyRKAlRlm~~Aek--F~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~Lkv 189 (317)
T COG0825 117 GRDTKEKLKRN----FGMP-RPEGYRKALRLMKLAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKV 189 (317)
T ss_pred CccchhHHHhc----CCCC-CchHHHHHHHHHHHHHH--hCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCC
Confidence 35667777766 4433 33322222222222222 2468999999999432 1345555544 44678
Q ss_pred ceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 024202 164 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243 (271)
Q Consensus 164 pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~ 243 (271)
||+++|.|-..|+|++-...||+ .+|+.||++.+-.|.+- ++ +.++.-. +. ++..
T Consensus 190 PiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPEG~----As---ILWkD~~---------------ka-~eAA 244 (317)
T COG0825 190 PIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPEGC----AS---ILWKDAS---------------KA-KEAA 244 (317)
T ss_pred CEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChhhh----hh---hhhcChh---------------hh-HHHH
Confidence 99999999999999999999999 89999999988777541 11 1111110 01 1122
Q ss_pred HHhhCCccccHHHHHHcCCceeeccC
Q 024202 244 QYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 244 ~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
+.| -+|+.+-+++||||.|+..
T Consensus 245 e~m----kita~dLk~lgiID~II~E 266 (317)
T COG0825 245 EAM----KITAHDLKELGIIDGIIPE 266 (317)
T ss_pred HHc----CCCHHHHHhCCCcceeccC
Confidence 223 3788999999999999753
No 135
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=96.89 E-value=0.008 Score=55.77 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=73.1
Q ss_pred EEcceeChhHHHHHHHHHHHHhccC---CCCCEEEEEeCCCCcHHHHH-------HHHHHHHhhC--CceEEEEecc--c
Q 024202 108 FIGQPINSMVAQRAISQLVTLATID---EDADILMYLNCPGGSIYSVL-------AIYDCMSWIK--PKVGTVCFGV--A 173 (271)
Q Consensus 108 ~l~g~Id~~~a~~ii~~L~~l~~~~---~~~~I~L~INSPGGsV~ag~-------~Iyd~I~~~~--~pV~tvv~G~--A 173 (271)
|.+|.+.+...+.+...+.....++ ..-++++.++|.|+.+.++. .++..+..++ .|+++++.|- |
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc 149 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGC 149 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 5688899888899988877655421 12489999999999876643 3444444444 6999999998 8
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecCC
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ 203 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp~ 203 (271)
+.+++++++.+|. .+|.|++++.+-.|.
T Consensus 150 ~GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 150 FGGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred chHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 8999999999998 999999999887773
No 136
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.75 E-value=0.0085 Score=56.32 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=72.8
Q ss_pred EEcceeChhHHHHHHHHHHHHhccC---CCCCEEEEEeCCCCcHHHHH-------HHHHHHHhhC--CceEEEEecc--c
Q 024202 108 FIGQPINSMVAQRAISQLVTLATID---EDADILMYLNCPGGSIYSVL-------AIYDCMSWIK--PKVGTVCFGV--A 173 (271)
Q Consensus 108 ~l~g~Id~~~a~~ii~~L~~l~~~~---~~~~I~L~INSPGGsV~ag~-------~Iyd~I~~~~--~pV~tvv~G~--A 173 (271)
|.+|.+.+...+.+...++...... ..-++++.++|.|+.+.++. .++..+..++ .|+++++.|. |
T Consensus 79 f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc 158 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGC 158 (301)
T ss_pred ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 5689999989999988777654432 12589999999998865432 3454544444 6999999998 9
Q ss_pred chHHHHHHhcCCcCcEEeccCcEEeeecC
Q 024202 174 ASQAAIILAGGEKGMRYAMPNARIMLNQP 202 (271)
Q Consensus 174 ASaa~lIa~agdkg~R~a~PnS~imiHqp 202 (271)
+.+++++++.||. .+|.+++++.+-.|
T Consensus 159 ~GG~a~~a~l~D~--iIm~~~a~iglaGP 185 (301)
T PRK07189 159 FGGMGIAAALCSY--LIVSEEGRLGLSGP 185 (301)
T ss_pred cHHHHHHHhcCCE--EEEECCcEEeccCH
Confidence 9999999999998 99999999988776
No 137
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=96.57 E-value=0.0063 Score=54.84 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=90.6
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCEEEEEe-------CCCCcH-----------------HHHHHHHHHHHhhCCceEEEE
Q 024202 114 NSMVAQRAISQLVTLATIDEDADILMYLN-------CPGGSI-----------------YSVLAIYDCMSWIKPKVGTVC 169 (271)
Q Consensus 114 d~~~a~~ii~~L~~l~~~~~~~~I~L~IN-------SPGGsV-----------------~ag~~Iyd~I~~~~~pV~tvv 169 (271)
.+.+...+++++.....++...-|+|-=| |-||+- ...+.+-..||..++||++.|
T Consensus 44 rP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V 123 (282)
T COG0447 44 RPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMV 123 (282)
T ss_pred CCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEEE
Confidence 45677788888888776655555555434 233331 134667778999999999999
Q ss_pred ecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHhh
Q 024202 170 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG-GHVEDVKRQVNEAVISRHKIDRMYAAFTGQ-PIEKVQQYTE 247 (271)
Q Consensus 170 ~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~-G~~~di~~~~~el~~~~~~i~~iya~~tG~-~~e~i~~~~~ 247 (271)
.|.|..+|-.+-+-||- -.+..|++|.-..|..|+. |-.-. . .+.++ .|+ ...+|.=+
T Consensus 124 ~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs-----~-------ylar~----VGqKkArEIwfL-- 183 (282)
T COG0447 124 AGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGS-----S-------YLARI----VGQKKAREIWFL-- 183 (282)
T ss_pred eeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccH-----H-------HHHHH----hhhhhhHHhhhh--
Confidence 99999999999999998 7888899998888876532 21110 0 11111 122 12233322
Q ss_pred CCccccHHHHHHcCCceeeccC
Q 024202 248 RDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 248 ~~~~lsa~EAle~GLID~I~~~ 269 (271)
.+.++|+||++.|+|..|+..
T Consensus 184 -cR~Y~A~eal~MGlVN~Vvp~ 204 (282)
T COG0447 184 -CRQYDAEEALDMGLVNTVVPH 204 (282)
T ss_pred -hhhccHHHHHhcCceeeeccH
Confidence 356899999999999988753
No 138
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=96.18 E-value=0.023 Score=50.91 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=63.4
Q ss_pred HHHHHHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 024202 152 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMY 231 (271)
Q Consensus 152 ~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iy 231 (271)
..+.+.|++++.||++-|.|+|+-+|.-+.++||. .++..++.|.......|..=..-.+. +.+
T Consensus 115 ~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGvA-----laR--------- 178 (287)
T KOG1682|consen 115 TDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGVA-----LAR--------- 178 (287)
T ss_pred HHHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcchh-----Hhh---------
Confidence 45677889999999999999999999999999997 78888888754333222211111110 000
Q ss_pred HHHhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 232 AAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 232 a~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
-.+......++-.+.-++++||+-.||+.++++.
T Consensus 179 ----avpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~ 212 (287)
T KOG1682|consen 179 ----AVPRKVAAYMLMTGLPITGEEALISGLVSKVVPA 212 (287)
T ss_pred ----hcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCH
Confidence 1122222222222456788999999998888764
No 139
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.97 E-value=0.023 Score=51.26 Aligned_cols=129 Identities=19% Similarity=0.275 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCC-----c---------------HHHHHHHHHHHHhhCCceEEEEecccchH
Q 024202 117 VAQRAISQLVTLATIDEDADILMYLNCPGG-----S---------------IYSVLAIYDCMSWIKPKVGTVCFGVAASQ 176 (271)
Q Consensus 117 ~a~~ii~~L~~l~~~~~~~~I~L~INSPGG-----s---------------V~ag~~Iyd~I~~~~~pV~tvv~G~AASa 176 (271)
..+.+.+.|..++.++....|.++=-+||= + |..-..+++.|.+++.||++-++|.|-.+
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 345566666677777655555555555762 1 23345778888999999999999999999
Q ss_pred HHHHHhcCCcCcEEeccCcEEeeecCCC----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Q 024202 177 AAIILAGGEKGMRYAMPNARIMLNQPQS----GSGGHVEDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQQYTERDRFL 252 (271)
Q Consensus 177 a~lIa~agdkg~R~a~PnS~imiHqp~~----g~~G~~~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~~~~~~~~~l 252 (271)
|-=++++||. |++..++.+++-.... |..|+ ..+. ++ .|. ...++++-..+.|
T Consensus 139 GLElALACDi--Rva~s~akmGLvET~laiiPGaGGt-QRLp--------------R~----vg~--alaKELIftarvl 195 (291)
T KOG1679|consen 139 GLELALACDI--RVAASSAKMGLVETKLAIIPGAGGT-QRLP--------------RI----VGV--ALAKELIFTARVL 195 (291)
T ss_pred chhhhhhccc--eehhhhccccccccceeeecCCCcc-chhH--------------HH----HhH--HHHHhHhhhheec
Confidence 9999999999 9999998887654322 22342 1111 11 111 1223444446789
Q ss_pred cHHHHHHcCCceeecc
Q 024202 253 SAAEAMEFGLIDGILE 268 (271)
Q Consensus 253 sa~EAle~GLID~I~~ 268 (271)
++.||...|||..+++
T Consensus 196 ~g~eA~~lGlVnhvv~ 211 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVE 211 (291)
T ss_pred cchhHHhcchHHHHHh
Confidence 9999999999987765
No 140
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.59 E-value=0.15 Score=46.43 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=49.1
Q ss_pred ccCCCCCEEEEEeCCCCc---HHH----------HHHHHHHHHhhCCceEEEEecccchHHHHHH-hcCCcCcEEeccCc
Q 024202 130 TIDEDADILMYLNCPGGS---IYS----------VLAIYDCMSWIKPKVGTVCFGVAASQAAIIL-AGGEKGMRYAMPNA 195 (271)
Q Consensus 130 ~~~~~~~I~L~INSPGGs---V~a----------g~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa-~agdkg~R~a~PnS 195 (271)
.+.+..+|++.|++||-. -.+ .-.-|+.-|..+-||++.+.|.|.|+|.+-. +-++. .+++|++
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r--l~AL~ga 137 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR--LIALPGA 137 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc--hhcCCCC
Confidence 345678999999999943 233 3344555666667999999999999887764 55566 8899955
Q ss_pred EEeeec
Q 024202 196 RIMLNQ 201 (271)
Q Consensus 196 ~imiHq 201 (271)
++|-
T Consensus 138 --~i~v 141 (234)
T PF06833_consen 138 --MIHV 141 (234)
T ss_pred --eeec
Confidence 4454
No 141
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.85 E-value=0.11 Score=52.17 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=70.8
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhhCCceEEEEecccchHHH
Q 024202 109 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 178 (271)
Q Consensus 109 l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPG----------GsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~ 178 (271)
++|.|+.+.+..-..-++..+.. .-+|+...|.|| |-+--|-.|..++-....|..|++.+.+..+|+
T Consensus 336 ~~G~l~~~sa~KaArFI~~cd~~--~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKAARFIRLCDAF--NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHHHHHHHhhhcc--CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 47788888877655544433332 358999999998 556778899999999999999999999999999
Q ss_pred HHHhcCCcC--cEEeccCcEEeeecCC
Q 024202 179 IILAGGEKG--MRYAMPNARIMLNQPQ 203 (271)
Q Consensus 179 lIa~agdkg--~R~a~PnS~imiHqp~ 203 (271)
+..++..-+ ..|+.|++++.+..|.
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~iaVMG~e 440 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIAVMGPE 440 (526)
T ss_pred eeecCccCCCceeEecCcceeeecCHH
Confidence 888765543 3567788888776664
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.73 E-value=0.21 Score=50.84 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=66.9
Q ss_pred EEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH---H-------HHHHHHHHHh-h--CCceEEEEecccc
Q 024202 108 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY---S-------VLAIYDCMSW-I--KPKVGTVCFGVAA 174 (271)
Q Consensus 108 ~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~---a-------g~~Iyd~I~~-~--~~pV~tvv~G~AA 174 (271)
+.+|.+.....+.+...+....+. .-+|+..++|+|+.+. . .-.|+..+.. + ..|.++++.|-|+
T Consensus 140 v~GGs~g~~~~~Ki~r~~elA~~~--~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLRAQEIAAQC--RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 357888998999998877665443 4689999999998761 1 1234444333 3 3699999999999
Q ss_pred hHHHHHHhcCCcCcEEec-cCcEEeeecC
Q 024202 175 SQAAIILAGGEKGMRYAM-PNARIMLNQP 202 (271)
Q Consensus 175 Saa~lIa~agdkg~R~a~-PnS~imiHqp 202 (271)
++|+++.+.+|. .++. +++.+.+-.|
T Consensus 218 gGgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 218 AGGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred hHHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 999999888887 5554 6788888776
No 143
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=93.80 E-value=0.39 Score=45.17 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=67.9
Q ss_pred EEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHH-------HH----HHHHHhhCCceEEEEecccchH
Q 024202 108 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL-------AI----YDCMSWIKPKVGTVCFGVAASQ 176 (271)
Q Consensus 108 ~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~-------~I----yd~I~~~~~pV~tvv~G~AASa 176 (271)
|++|.+.....+.+...++.+... .-++++...|.|+.+.++. .+ ....+.-..|.++++.|-++.+
T Consensus 144 f~gGSmG~v~geKi~ra~e~A~~~--rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIEYATNE--SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHc--CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 578999999999999888765543 3689999999998765443 11 2112233469999999988888
Q ss_pred HHHHHh-cCCcCcEEeccCcEEeeecCC
Q 024202 177 AAIILA-GGEKGMRYAMPNARIMLNQPQ 203 (271)
Q Consensus 177 a~lIa~-agdkg~R~a~PnS~imiHqp~ 203 (271)
+++.++ .||. +++.|++.+.+-.|.
T Consensus 222 ~aas~a~l~Di--iiae~~A~IgfAGPr 247 (296)
T CHL00174 222 VTASFGMLGDI--IIAEPNAYIAFAGKR 247 (296)
T ss_pred HHHHHHHcccE--EEEeCCeEEEeeCHH
Confidence 877765 4998 889999999877663
No 144
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=93.01 E-value=0.48 Score=47.70 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=77.2
Q ss_pred EEecCCCCCC-cchhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHH-------HHHHHH
Q 024202 87 AVMTPGGPLD-LSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL-------AIYDCM 158 (271)
Q Consensus 87 ~~~~~~g~~d-l~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~-------~Iyd~I 158 (271)
.|++..|.+| ..-.++-+..=|.+|.+.....+.++..++...+. .-+++..++|.|+.+..+. .++...
T Consensus 71 gvVtG~G~v~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~--~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~ 148 (512)
T TIGR01117 71 GVVTGYGTIDGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKM--GAPVVGLNDSGGARIQEAVDALKGYGDIFYRN 148 (512)
T ss_pred eEEEEEEEECCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHc--CCCEEEEecCCCCCccccchhhhhHHHHHHHH
Confidence 4555444333 12222333333578999999999999877765543 3689999999998864432 223222
Q ss_pred Hhh--CCceEEEEecccchHHHHHHhcCCcCcEEeccC-cEEeeecCC
Q 024202 159 SWI--KPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN-ARIMLNQPQ 203 (271)
Q Consensus 159 ~~~--~~pV~tvv~G~AASaa~lIa~agdkg~R~a~Pn-S~imiHqp~ 203 (271)
... ..|.++++.|-|..++++.++.||. .++.|+ +.+.+-.|.
T Consensus 149 ~~~s~~iP~Isvv~G~~~GG~a~~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 149 TIASGVVPQISAIMGPCAGGAVYSPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHcCCCcEEEEEecCCCcHHHHHHHhcCc--eEEeccceEEEecChH
Confidence 222 3599999999999999999999998 999996 467776663
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=91.79 E-value=0.38 Score=48.08 Aligned_cols=91 Identities=14% Similarity=0.224 Sum_probs=67.0
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCC--cHHH---HH----HHHHHHHhh--CCceEEEEecccchHH
Q 024202 109 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG--SIYS---VL----AIYDCMSWI--KPKVGTVCFGVAASQA 177 (271)
Q Consensus 109 l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGG--sV~a---g~----~Iyd~I~~~--~~pV~tvv~G~AASaa 177 (271)
++|.+.....+.+...+...... .-+++..++|.|+ .+.. ++ .++..+..+ ..|+++++.|.|..++
T Consensus 69 ~gGs~g~~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~ 146 (493)
T PF01039_consen 69 LGGSVGEVHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGG 146 (493)
T ss_dssp GGGTBSHHHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGG
T ss_pred ecCCCCcccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccch
Confidence 57888999999998877765554 3578888999999 3322 21 333333333 4599999999999989
Q ss_pred HHHHhcCCcCcEEeccC-cEEeeecCC
Q 024202 178 AIILAGGEKGMRYAMPN-ARIMLNQPQ 203 (271)
Q Consensus 178 ~lIa~agdkg~R~a~Pn-S~imiHqp~ 203 (271)
++++..+|. .++.++ +.+.+..|.
T Consensus 147 A~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 147 AYLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp GHHHHHSSE--EEEETTTCEEESSTHH
T ss_pred hhcccccCc--cccCccceEEEecccc
Confidence 999888888 888887 999887774
No 146
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=91.78 E-value=1.9 Score=39.87 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=60.7
Q ss_pred HHHHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 024202 154 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHKIDRMYAA 233 (271)
Q Consensus 154 Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~~di~~~~~el~~~~~~i~~iya~ 233 (271)
..+++-.+++|+++.+.|-|-..|+-|+.-||. .|+...++ +|.|.... |+..|--.... +-+
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~--V~A~Dka~--F~TPfa~l-Gq~PEG~Ss~t------------~p~ 161 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCDY--VWASDKAW--FQTPFAKL-GQSPEGCSSVT------------LPK 161 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhhe--EEeccceE--Eeccchhc-CCCCCcceeee------------ehH
Confidence 567788889999999999999999999988998 77775554 46665422 22211100000 000
Q ss_pred HhCCCHHHHHHHhhCCccccHHHHHHcCCceeeccC
Q 024202 234 FTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGILET 269 (271)
Q Consensus 234 ~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I~~~ 269 (271)
..|. +.-.+++=-+.-|+++||.+.|||++|...
T Consensus 162 imG~--~~A~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 162 IMGS--ASANEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred hhch--hhHHHHHHhCCcccHHHHHhcCchhhhcCh
Confidence 0111 111222222466899999999999998754
No 147
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=89.32 E-value=2.4 Score=37.13 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=57.1
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh--------------------------h
Q 024202 109 IGQPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------------I 161 (271)
Q Consensus 109 l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~--------------------------~ 161 (271)
+..-..+...+.+.+.+..++. +.+.++|.+ +-|||.+..+..+.+.+-. .
T Consensus 66 i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (224)
T cd06567 66 IPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLY 143 (224)
T ss_pred ECccCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCccc
Confidence 4433335566777777777665 478899888 7799999999988888764 2
Q ss_pred CCceEEEEecccchHHHHHHhcCCc
Q 024202 162 KPKVGTVCFGVAASQAAIILAGGEK 186 (271)
Q Consensus 162 ~~pV~tvv~G~AASaa~lIa~agdk 186 (271)
..||.+.+.+..+|+|-+++.+-..
T Consensus 144 ~~pv~vL~~~~taSaaE~~a~~lk~ 168 (224)
T cd06567 144 DGPLVVLVNEGSASASEIFAGALQD 168 (224)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3489999999999999988876544
No 148
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=89.24 E-value=2.9 Score=37.04 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=61.5
Q ss_pred CcchhcccCcEEEE--cceeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh------------
Q 024202 96 DLSSVLFRNRIIFI--GQPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW------------ 160 (271)
Q Consensus 96 dl~s~L~~~rII~l--~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~------------ 160 (271)
|-+++++.. |.|| .. .+....+.+.+.|..+...+ .+.++|.+ +.+||.+..+..|...+-.
T Consensus 41 ~~~~~~~~~-igYi~i~s-f~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g 117 (211)
T cd07560 41 DPYSRYLTP-IGYIRITS-FSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNG 117 (211)
T ss_pred CCcceeeCc-eEEEEEcc-cCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 444444443 5443 32 34456677888888777653 67888888 6789999998888775432
Q ss_pred ------------hCCceEEEEecccchHHHHHHhcCCc
Q 024202 161 ------------IKPKVGTVCFGVAASQAAIILAGGEK 186 (271)
Q Consensus 161 ------------~~~pV~tvv~G~AASaa~lIa~agdk 186 (271)
...||.+.+.+..+|+|-+++.+-..
T Consensus 118 ~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~lk~ 155 (211)
T cd07560 118 KREAYASDDGGLYDGPLVVLVNGGSASASEIVAGALQD 155 (211)
T ss_pred ceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHHhh
Confidence 34588889999999999988876544
No 149
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=88.63 E-value=5.3 Score=37.35 Aligned_cols=118 Identities=22% Similarity=0.212 Sum_probs=76.1
Q ss_pred CCCCCcccEEecCCCCCCc-chhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHH-----
Q 024202 79 NDNPPLMPAVMTPGGPLDL-SSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL----- 152 (271)
Q Consensus 79 ~~~~~~~~~~~~~~g~~dl-~s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~----- 152 (271)
+.......+|.+..|.++- .-.+.--.-=|.+|.+..-+.+.|+..+.++-.+ .-++++.--|.|-..-++.
T Consensus 103 ~~~tg~~davvtg~g~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQ 180 (294)
T COG0777 103 RKKTGLDDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQ 180 (294)
T ss_pred HhhcCCCcceEEEeeEECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHH
Confidence 3344456677776664441 1112111222789999999999999999986654 4677777777665554432
Q ss_pred -----HHHHHHHhhCCceEEEE-----ecccchHHHHHHhcCCcCcEEeccCcEEeeecCCC
Q 024202 153 -----AIYDCMSWIKPKVGTVC-----FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 204 (271)
Q Consensus 153 -----~Iyd~I~~~~~pV~tvv-----~G~AASaa~lIa~agdkg~R~a~PnS~imiHqp~~ 204 (271)
+-.+.++..+.|.++|. .|+-||-| +-||. .++.|.+.|++..|..
T Consensus 181 MaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA----~lGDi--~iAEP~AlIGFAGpRV 236 (294)
T COG0777 181 MAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFA----MLGDI--IIAEPGALIGFAGPRV 236 (294)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCCCccchhHhHH----hccCe--eecCcccccccCcchh
Confidence 22333444456887777 35666644 44787 8999999999988864
No 150
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=87.30 E-value=1.1 Score=38.33 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=28.2
Q ss_pred EEcceeChhHHHHHHHH---HHHHhccCCCCCEEEEEeCCCCcHH
Q 024202 108 FIGQPINSMVAQRAISQ---LVTLATIDEDADILMYLNCPGGSIY 149 (271)
Q Consensus 108 ~l~g~Id~~~a~~ii~~---L~~l~~~~~~~~I~L~INSPGGsV~ 149 (271)
-+.|.|+..-++.+.+. ++... .+.+.|+|++.||||-|.
T Consensus 104 dF~Gdi~A~~v~~LReeisail~~a--~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 104 DFKGDIKASEVESLREEISAILSVA--TPEDEVLVRLESPGGMVH 146 (155)
T ss_pred ecCCCccHHHHHHHHHHHHHHHHhC--CCCCeEEEEEecCCceee
Confidence 37888988666554444 44433 345899999999999874
No 151
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=85.54 E-value=3.5 Score=38.88 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=56.8
Q ss_pred eChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh------------------------hCCceEE
Q 024202 113 INSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW------------------------IKPKVGT 167 (271)
Q Consensus 113 Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~------------------------~~~pV~t 167 (271)
.+....+.+.+.|..++.. +.+.++|.+ +.|||.+..+..+...+-. ...||.+
T Consensus 161 f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~v 239 (334)
T TIGR00225 161 FSEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVV 239 (334)
T ss_pred cccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEE
Confidence 3445677888888887664 478899888 7799999999888887621 2458999
Q ss_pred EEecccchHHHHHHhcCCc
Q 024202 168 VCFGVAASQAAIILAGGEK 186 (271)
Q Consensus 168 vv~G~AASaa~lIa~agdk 186 (271)
.+.+..||+|-+++.+-..
T Consensus 240 Lvn~~TaSaaE~~a~~l~~ 258 (334)
T TIGR00225 240 LVNRGSASASEIFAGALQD 258 (334)
T ss_pred EECCCCCcHHHHHHHHHHh
Confidence 9999999999998876544
No 152
>PRK11186 carboxy-terminal protease; Provisional
Probab=85.13 E-value=4.4 Score=42.28 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-------------------------hCCceEEE
Q 024202 115 SMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW-------------------------IKPKVGTV 168 (271)
Q Consensus 115 ~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~-------------------------~~~pV~tv 168 (271)
....+.+.+.|..++.. +.+.++|-+ |-|||.+..+..|.+.+-. ...|+.+.
T Consensus 365 ~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVL 443 (667)
T PRK11186 365 VGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVL 443 (667)
T ss_pred cchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEE
Confidence 34577888888888765 478999999 7799999999988887421 13488899
Q ss_pred EecccchHHHHHHhcCC
Q 024202 169 CFGVAASQAAIILAGGE 185 (271)
Q Consensus 169 v~G~AASaa~lIa~agd 185 (271)
+.+..||++-+++.+-.
T Consensus 444 VN~~SASASEIfA~alq 460 (667)
T PRK11186 444 VDRYSASASEIFAAAMQ 460 (667)
T ss_pred eCCCCccHHHHHHHHHH
Confidence 99999999998886543
No 153
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=84.77 E-value=5.8 Score=38.41 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=59.9
Q ss_pred CcEEEEc-ceeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh---------------------
Q 024202 104 NRIIFIG-QPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------- 160 (271)
Q Consensus 104 ~rII~l~-g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~--------------------- 160 (271)
++|.||. ...+..+.+.+.+.|..++..+ .+.++|.+ |-|||.+..+..|.+.+-.
T Consensus 194 ~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (389)
T PLN00049 194 PKIGYIKLTTFNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADG 272 (389)
T ss_pred CCEEEEEeccccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCC
Confidence 3566642 1234556778888888887654 78899988 7789999999888887721
Q ss_pred -----hCCceEEEEecccchHHHHHHhcCC
Q 024202 161 -----IKPKVGTVCFGVAASQAAIILAGGE 185 (271)
Q Consensus 161 -----~~~pV~tvv~G~AASaa~lIa~agd 185 (271)
...|+.+.+.+..||++=+++.+=.
T Consensus 273 ~~~~~~~~PvvVLvn~~TaSasEi~a~alk 302 (389)
T PLN00049 273 SSAIATSEPLAVLVNKGTASASEILAGALK 302 (389)
T ss_pred CccccCCCCEEEEECCCCccHHHHHHHHHh
Confidence 1248889999999999998886543
No 154
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=81.59 E-value=7.1 Score=35.66 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=60.3
Q ss_pred cchhcc--cCcEEEE--cceeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHhhC---------
Q 024202 97 LSSVLF--RNRIIFI--GQPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSWIK--------- 162 (271)
Q Consensus 97 l~s~L~--~~rII~l--~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~~~--------- 162 (271)
-||.+. .++|.|| .. ......+.+.+.+..+++. ..+.++|-+ +-|||.+..+..|.+.+-.-.
T Consensus 55 ~fs~~~~~~~~IGYi~i~~-F~~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~ 132 (256)
T cd07561 55 RFSYIVDGGKKVGYLVYNS-FTSGYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATL 132 (256)
T ss_pred ceEEEeeCCCcEEEEEECc-cccchHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEE
Confidence 444443 3445553 33 2334677888888888865 478888888 779999999998888776510
Q ss_pred ----------------------------CceEEEEecccchHHHHHHhcCC
Q 024202 163 ----------------------------PKVGTVCFGVAASQAAIILAGGE 185 (271)
Q Consensus 163 ----------------------------~pV~tvv~G~AASaa~lIa~agd 185 (271)
.||++.+.+..||+|=+++.+=.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~VL~~~~TASAaE~~a~~Lk 183 (256)
T cd07561 133 EYNDKRSANNEDLLFSSKTLAGGNSLNLSKVYVLTSGSTASASELVINSLK 183 (256)
T ss_pred EecCCccCCCceeecccccccccCcCCcccEEEEECCCcccHHHHHHHHhh
Confidence 26777778888888888776543
No 155
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=81.40 E-value=7.4 Score=38.09 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=61.0
Q ss_pred EEEEcce-eChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-----------------------
Q 024202 106 IIFIGQP-INSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW----------------------- 160 (271)
Q Consensus 106 II~l~g~-Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~----------------------- 160 (271)
|.||.=+ .++...+.+..+|..|+++. .+.++|.+ |-|||.+.++..+.+.+..
T Consensus 205 IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~ 283 (406)
T COG0793 205 IGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE 283 (406)
T ss_pred EEEEEecccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccc
Confidence 5554222 34456677888888888875 89999999 6699999999999988771
Q ss_pred --hCCceEEEEecccchHHHHHHhcCC
Q 024202 161 --IKPKVGTVCFGVAASQAAIILAGGE 185 (271)
Q Consensus 161 --~~~pV~tvv~G~AASaa~lIa~agd 185 (271)
...|+.+.+.+..||++=+++-+-.
T Consensus 284 ~~~~~PlvvLvn~~SASAsEI~agalq 310 (406)
T COG0793 284 ALYDGPLVVLVNEGSASASEIFAGALQ 310 (406)
T ss_pred cCCCCCEEEEECCCCccHHHHHHHHHH
Confidence 1258999999999999998886655
No 156
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=81.14 E-value=6.4 Score=32.35 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-----------------------------hCCce
Q 024202 116 MVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW-----------------------------IKPKV 165 (271)
Q Consensus 116 ~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~-----------------------------~~~pV 165 (271)
...+.+.+.+..+.. ...+.++|.+ +.+||+...+..+...+.. ...||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 455666666666665 3478899999 7799999999888877642 23478
Q ss_pred EEEEecccchHHHHHHhcCCc
Q 024202 166 GTVCFGVAASQAAIILAGGEK 186 (271)
Q Consensus 166 ~tvv~G~AASaa~lIa~agdk 186 (271)
+..+.+.++|+|-+++.+...
T Consensus 94 ~vL~~~~t~Saae~fa~~lk~ 114 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASALKD 114 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHHHh
Confidence 888899999999988866543
No 157
>smart00245 TSPc tail specific protease. tail specific protease
Probab=79.53 E-value=12 Score=32.29 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=57.2
Q ss_pred CcEEEEc-ceeChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh---------------------
Q 024202 104 NRIIFIG-QPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------- 160 (271)
Q Consensus 104 ~rII~l~-g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~--------------------- 160 (271)
++|-|+. ...+..+.+.+.+.+..++.. +.+.++|.+ +.+||.+..+..+.+.+..
T Consensus 28 ~~igYi~i~~f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 106 (192)
T smart00245 28 GNIGYIRIPEFSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPAN 106 (192)
T ss_pred CcEEEEEEeEEChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecC
Confidence 3554432 224444567777777777765 468888888 5699999999988887732
Q ss_pred ----hCCceEEEEecccchHHHHHHhcCCc
Q 024202 161 ----IKPKVGTVCFGVAASQAAIILAGGEK 186 (271)
Q Consensus 161 ----~~~pV~tvv~G~AASaa~lIa~agdk 186 (271)
...||++.+.+..||+|-+++.+-..
T Consensus 107 ~~~~~~~pv~vL~~~~TaSaaE~~a~~lk~ 136 (192)
T smart00245 107 LGRKYSKPLVVLVNEGTASASEIFAGALKD 136 (192)
T ss_pred CCcccCCCEEEEECCCCeeHHHHHHHHHhh
Confidence 11368888888999999888766544
No 158
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=77.04 E-value=15 Score=33.32 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=49.4
Q ss_pred ccCcEEEEcce-eChhHHHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh-------------------
Q 024202 102 FRNRIIFIGQP-INSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW------------------- 160 (271)
Q Consensus 102 ~~~rII~l~g~-Id~~~a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~------------------- 160 (271)
..++|.||.-+ ..+...+.+.+.+.. ....+.++|.+ +-+||.+.. .|.+.+..
T Consensus 85 ~~~~igYi~i~~~~~~~~~~~~~~~~~---~~~~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~~p~ 159 (266)
T cd07562 85 SDGRIGYVHIPDMGDDGFAEFLRDLLA---EVDKDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVTYPS 159 (266)
T ss_pred cCCcEEEEEeCCCChHHHHHHHHHHHh---cCCCceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCCCcc
Confidence 34667665322 233344445554443 22268899888 567888433 34444321
Q ss_pred --hCCceEEEEecccchHHHHHHhcCCc
Q 024202 161 --IKPKVGTVCFGVAASQAAIILAGGEK 186 (271)
Q Consensus 161 --~~~pV~tvv~G~AASaa~lIa~agdk 186 (271)
.+.||.+.+.+.++|+|-+++.+-..
T Consensus 160 ~~~~~pv~vL~~~~t~SaaE~~a~~lk~ 187 (266)
T cd07562 160 GRWRGPVVVLVNEGSASDAEIFAYGFRA 187 (266)
T ss_pred cccCCCEEEEECCCCCchHHHHHHHHHH
Confidence 35699999999999999988875543
No 159
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=76.16 E-value=10 Score=36.80 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=66.6
Q ss_pred cEEEEcce-----eChhHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCCcHHHH-------------------HHHH
Q 024202 105 RIIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV-------------------LAIY 155 (271)
Q Consensus 105 rII~l~g~-----Id~~~a~~ii~~L~~l~~~~~~~~I~L~IN-----SPGGsV~ag-------------------~~Iy 155 (271)
|+|.|+-| +|-++...+...|..++.++..+-|+|.=+ |-||+|.+. -.+.
T Consensus 49 r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~ 128 (401)
T KOG1684|consen 49 RVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLN 128 (401)
T ss_pred eEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 45555544 777888899999999998776665554444 457886432 2344
Q ss_pred HHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEe-------ccCcEEeeecC
Q 024202 156 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA-------MPNARIMLNQP 202 (271)
Q Consensus 156 d~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a-------~PnS~imiHqp 202 (271)
..|-.+.+|+++...|....+|.=+...|.- |++ +|..-|++|.-
T Consensus 129 ~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT~~AmPEt~IGlfPD 180 (401)
T KOG1684|consen 129 HLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERTVFAMPETGIGLFPD 180 (401)
T ss_pred HHHHHhcCceEEEeeceeecCCcceeeccee--EEeeccceecccccccccccC
Confidence 4566677899999999999999988887766 555 44444566653
No 160
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=72.66 E-value=13 Score=35.03 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=50.3
Q ss_pred EEEEcce--eChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccc
Q 024202 106 IIFIGQP--INSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAA 174 (271)
Q Consensus 106 II~l~g~--Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AA 174 (271)
+|-++.. .|- .+.+.|.++.+++..+.|.||+.+-|-.+..+..+.+..+. ++||.++..|..+
T Consensus 180 ~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 180 CVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 4556666 443 56677888888888999999999977788888888887654 7899999888765
No 161
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=70.66 E-value=26 Score=31.34 Aligned_cols=66 Identities=18% Similarity=0.025 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh---------------------------------hCC
Q 024202 118 AQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW---------------------------------IKP 163 (271)
Q Consensus 118 a~~ii~~L~~l~~~~~~~~I~L~I-NSPGGsV~ag~~Iyd~I~~---------------------------------~~~ 163 (271)
.+.+-+.+..++. .+.++|.+ +.+||+...+..|...+-. .+.
T Consensus 82 ~~~~~~~~~~l~~---~~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T cd07563 82 EALLDEALDKLAD---TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTK 158 (250)
T ss_pred HHHHHHHHHHhcC---CCeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCC
Confidence 3444444444443 37888888 6689999888888877751 124
Q ss_pred ceEEEEecccchHHHHHHhcCCc
Q 024202 164 KVGTVCFGVAASQAAIILAGGEK 186 (271)
Q Consensus 164 pV~tvv~G~AASaa~lIa~agdk 186 (271)
||++.+.+.++|+|-.++.+-..
T Consensus 159 pv~vL~~~~T~SaaE~~a~~lk~ 181 (250)
T cd07563 159 PVYVLTSPVTFSAAEEFAYALKQ 181 (250)
T ss_pred CEEEEeCCCcCcHHHHHHHHHHh
Confidence 78888899999999888876544
No 162
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=66.74 E-value=14 Score=37.57 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=65.0
Q ss_pred EcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHH--------HHHHHHHHHhhC-CceEEEEecccchHHHH
Q 024202 109 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS--------VLAIYDCMSWIK-PKVGTVCFGVAASQAAI 179 (271)
Q Consensus 109 l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~a--------g~~Iyd~I~~~~-~pV~tvv~G~AASaa~l 179 (271)
.+|...+..++.++.....+.+. ..+++...+|-|+.+.. |.-.|+..+.+. .|.++++.|-|+.+|+|
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~~--g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY 180 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIEN--GLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAY 180 (526)
T ss_pred ecccccccccchHHHHHHHHHHc--CCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccc
Confidence 56777777778887755544332 35677777887766543 445566666554 49999999999999999
Q ss_pred HHhcCCcCcEEeccC-cEEeeecC
Q 024202 180 ILAGGEKGMRYAMPN-ARIMLNQP 202 (271)
Q Consensus 180 Ia~agdkg~R~a~Pn-S~imiHqp 202 (271)
+..-+|. .++..+ +.+.+..|
T Consensus 181 ~pal~D~--~imv~~~~~mfltGP 202 (526)
T COG4799 181 SPALTDF--VIMVRDQSYMFLTGP 202 (526)
T ss_pred cccccce--EEEEcCCccEEeeCH
Confidence 9999998 888887 66666655
No 163
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=61.62 E-value=27 Score=28.95 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=33.8
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhC--CceEEEEecc
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGV 172 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~--~pV~tvv~G~ 172 (271)
+|-++...|- .+.+-|.++..++..+.|.+|+.+-+- +....+.++... +||.++-.|.
T Consensus 31 ~vs~Gn~~dv----~~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 31 VVSVGNEADV----DFADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp EEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred EEEeCccccC----CHHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4556666544 455667788888888999999997443 566777777765 8998888776
No 164
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=61.44 E-value=26 Score=33.32 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=53.4
Q ss_pred EecCCC--CCCcchhcccCc-----EEEEccee-ChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHH
Q 024202 88 VMTPGG--PLDLSSVLFRNR-----IIFIGQPI-NSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 159 (271)
Q Consensus 88 ~~~~~g--~~dl~s~L~~~r-----II~l~g~I-d~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~ 159 (271)
+...+| .+.+...+.+.. +|-+++.- .+ -.+.+.|.++.+|+..+.|.||+..-|-.-..+.+..+. .
T Consensus 174 iVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g---~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~ 249 (317)
T PTZ00187 174 IVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNG---TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-N 249 (317)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCC---CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-h
Confidence 344444 344444444443 34466652 12 257777888888888999999999866665555555554 3
Q ss_pred hhCCceEEEEecccc
Q 024202 160 WIKPKVGTVCFGVAA 174 (271)
Q Consensus 160 ~~~~pV~tvv~G~AA 174 (271)
..++||.++..|..+
T Consensus 250 ~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 250 PIKKPVVSFIAGITA 264 (317)
T ss_pred cCCCcEEEEEecCCC
Confidence 346899999988765
No 165
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=59.96 E-value=32 Score=34.48 Aligned_cols=87 Identities=20% Similarity=0.170 Sum_probs=58.7
Q ss_pred cceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC----------CcHHHHHHHHHHHHhhCCceEEEEecccchHHHH
Q 024202 110 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 179 (271)
Q Consensus 110 ~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPG----------GsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~l 179 (271)
+|-++.+++.....-++...+. .-++++..|+|| |-.-.|-.+.++....+.|.+|++.|-+..+.|-
T Consensus 362 ~G~L~s~sa~KgarfIe~c~q~--~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~ 439 (536)
T KOG0540|consen 362 GGVLFSESAVKGARFIELCDQR--NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYA 439 (536)
T ss_pred ccccchhhhhhhHHHHHHHHhc--CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCccc
Confidence 3666777776665555554433 457899999988 2233455667777777789999999888874444
Q ss_pred HH---hcCCcCcEEeccCcEEeee
Q 024202 180 IL---AGGEKGMRYAMPNARIMLN 200 (271)
Q Consensus 180 Ia---~agdkg~R~a~PnS~imiH 200 (271)
+. ..+|. .|+.||++|.+.
T Consensus 440 m~sr~~~gd~--~yawP~A~Iavm 461 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAVM 461 (536)
T ss_pred ccccccCCce--eEEcccceeeec
Confidence 21 34555 788999998664
No 166
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=59.89 E-value=25 Score=33.05 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCCCCcHHH-HHHHHHHHHhhCCceEEEEecccchHHHHHHhcCCcCcEEeccCcEE
Q 024202 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYS-VLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 197 (271)
Q Consensus 119 ~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~a-g~~Iyd~I~~~~~pV~tvv~G~AASaa~lIa~agdkg~R~a~PnS~i 197 (271)
..|++.|+.+++|+ ....++.|-=+||...+ +...... +..++||.+++.|..| .+|+|+..-.+.+
T Consensus 186 t~fid~L~~fe~Dp-~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta----------p~gkrmGhaGaiv 253 (293)
T COG0074 186 TSFIDALEMFEADP-ETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA----------PEGKRMGHAGAIV 253 (293)
T ss_pred ccHHHHHHHHhcCc-cccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC----------Cccchhhhhhhhh
Confidence 56888888888765 55667788999998654 2233333 4455899999999887 7777876666655
No 167
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=46.97 E-value=1.2e+02 Score=22.73 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=25.0
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEE
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L 139 (271)
++.+.|+++-..+..+-+.|..+...+..+.|++
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi 48 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVL 48 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEE
Confidence 3558999999999999988887655333455666
No 168
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=46.86 E-value=38 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=25.3
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEE
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILM 139 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L 139 (271)
++.+.|+++-..++.+.+++..+-...+.+.++|
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 4568999999999999999877543333456666
No 169
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=45.14 E-value=64 Score=27.34 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEE
Q 024202 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 119 ~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tv 168 (271)
..+++.+.....+. .. +.|| ||+-.-.+.+|.|+|+....|++=|
T Consensus 54 g~Lid~Ihea~~~~--~~--IvIN-pga~THTSvAlrDAi~av~iP~vEV 98 (146)
T COG0757 54 GELIDWIHEARGKA--GD--IVIN-PGAYTHTSVALRDAIAAVSIPVVEV 98 (146)
T ss_pred HHHHHHHHHhhccC--Ce--EEEc-CccchhhHHHHHHHHHhcCCCEEEE
Confidence 46777777655432 22 5566 8999999999999999999997654
No 170
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=42.97 E-value=1.1e+02 Score=24.53 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceee
Q 024202 211 EDVKRQVNEAVISRHKIDRM---YAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGI 266 (271)
Q Consensus 211 ~di~~~~~el~~~~~~i~~i---ya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I 266 (271)
-|.....+-+.+..+.|+.. +.++.|-+++++.+++++.--+ +||+.+||.|.-
T Consensus 31 ~D~qeAln~Vie~~eaFdsLPAkvRe~FgNdPeeml~~L~d~~ny--de~~algll~~e 87 (114)
T TIGR02763 31 LDYQEALNIVIEGEEAFDSLPAKVRENFGNDPEEMLSWLEDEANY--DEVEALGLLDPE 87 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHhChhhH--HHHHHhcccccc
Confidence 34444444444455555543 5567788999998888755433 589999999864
No 171
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=42.84 E-value=66 Score=27.32 Aligned_cols=57 Identities=18% Similarity=0.031 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCC-CCcHHHHHHHHHHHHhhC-----CceEEEEecccch
Q 024202 119 QRAISQLVTLATIDEDADILMYLNCP-GGSIYSVLAIYDCMSWIK-----PKVGTVCFGVAAS 175 (271)
Q Consensus 119 ~~ii~~L~~l~~~~~~~~I~L~INSP-GGsV~ag~~Iyd~I~~~~-----~pV~tvv~G~AAS 175 (271)
+.+.+.|..+.+++.++.|.|.+-=. |..-+.+..+..+++..+ .||++.+.|..+-
T Consensus 59 ~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 59 STRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp SHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 45566666666666667666555544 334567888999998865 5888888886665
No 172
>PRK06091 membrane protein FdrA; Validated
Probab=42.31 E-value=63 Score=33.15 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=43.0
Q ss_pred HHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEecccc
Q 024202 120 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAA 174 (271)
Q Consensus 120 ~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AA 174 (271)
.+.+.|.+|..++..+.|.+|+-=|+-.+.. .+.+.++..++||+++..|.-.
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCc
Confidence 4566777888888889999999777777774 8888888889999999988544
No 173
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=36.31 E-value=1.7e+02 Score=21.22 Aligned_cols=78 Identities=9% Similarity=0.058 Sum_probs=48.8
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhhCC-ceEEEEecccchHHHHHHhc
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIKP-KVGTVCFGVAASQAAIILAG 183 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INS-PGGsV~ag~~Iyd~I~~~~~-pV~tvv~G~AASaa~lIa~a 183 (271)
++.+.|+++-..+..+.+++....... .+.+++.+.. +.=+..+...+....+.++. .+...+.|.-....-++-..
T Consensus 11 ii~l~G~l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~~ 89 (99)
T cd07043 11 VVRLSGELDAATAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLELT 89 (99)
T ss_pred EEEEeceecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 566899999999999988887765432 4566655433 22234556666667766653 45566666655555555444
Q ss_pred C
Q 024202 184 G 184 (271)
Q Consensus 184 g 184 (271)
|
T Consensus 90 g 90 (99)
T cd07043 90 G 90 (99)
T ss_pred C
Confidence 3
No 174
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=36.18 E-value=2e+02 Score=22.04 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=46.5
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhhCCceEEEEecccchHHHHH
Q 024202 105 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 180 (271)
Q Consensus 105 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INS-PGGsV~ag~~Iyd~I~~~~~pV~tvv~G~AASaa~lI 180 (271)
++.+++..++. +.+.+.+... + . ++ +-|.+ .+........+.+.++...+.+.+++.|..++...-.
T Consensus 30 ~v~~~d~~~~~---~~l~~~~~~~---~-p-d~-V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~ 97 (121)
T PF02310_consen 30 EVDILDANVPP---EELVEALRAE---R-P-DV-VGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEE 97 (121)
T ss_dssp EEEEEESSB-H---HHHHHHHHHT---T-C-SE-EEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHH
T ss_pred eEEEECCCCCH---HHHHHHHhcC---C-C-cE-EEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHH
Confidence 35566665544 5555555542 1 1 23 55566 7888889999999999998889999999887776654
No 175
>PHA00099 minor capsid protein
Probab=35.91 E-value=1.6e+02 Score=24.61 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHhhCCccccHHHHHHcCCc
Q 024202 212 DVKRQVNEAVISRHKIDRM---YAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLI 263 (271)
Q Consensus 212 di~~~~~el~~~~~~i~~i---ya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLI 263 (271)
|.....+-+.+..+.|+.. ..++.|-+++++.+++.+.-. -+||+.+||+
T Consensus 62 D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~N--ydEa~~LGl~ 114 (147)
T PHA00099 62 DYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPEN--YDEAKALGLV 114 (147)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChhh--HHHHHhccee
Confidence 4444444444455555543 445678889999888875543 4799999998
No 176
>PLN02522 ATP citrate (pro-S)-lyase
Probab=35.06 E-value=1.1e+02 Score=31.93 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=43.4
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHh--hCCceEEEEecccc
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW--IKPKVGTVCFGVAA 174 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~--~~~pV~tvv~G~AA 174 (271)
+|-+++..+. -..+.+.|.++++++..+.|.||+.=.|.+- ....+.++. .++||.+++.|..+
T Consensus 197 ~VsiGnd~~~--g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e---~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 197 GIAIGGDVFP--GSTLSDHVLRFNNIPQIKMIVVLGELGGRDE---YSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEeCCCCCC--CCCHHHHHHHHhcCCCCCEEEEEEecCchhH---HHHHHHHHHhcCCCCEEEEeccCCC
Confidence 4557775442 1245777888888888899999988434433 344444554 56899999999876
No 177
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=34.26 E-value=1.4e+02 Score=27.86 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=48.5
Q ss_pred EEecCCC--CCCcchhcccCc-----EEEEcceeC--hhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHH
Q 024202 87 AVMTPGG--PLDLSSVLFRNR-----IIFIGQPIN--SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDC 157 (271)
Q Consensus 87 ~~~~~~g--~~dl~s~L~~~r-----II~l~g~Id--~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~ 157 (271)
++..++| ...+.....+.+ ++-++...+ - .+.+-|.++..++..+.|.||+.+-|-....+ ...
T Consensus 147 aliSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv----~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~---~~~ 219 (286)
T TIGR01019 147 GIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGT----SFIDVLEAFEKDPETEAIVMIGEIGGSAEEEA---ADF 219 (286)
T ss_pred EEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCC----CHHHHHHHHhhCCCCcEEEEEEecCCchHHHH---HHH
Confidence 4455555 233444443333 344676633 3 45566677778888999999999643333322 233
Q ss_pred HHh-hCCceEEEEecccc
Q 024202 158 MSW-IKPKVGTVCFGVAA 174 (271)
Q Consensus 158 I~~-~~~pV~tvv~G~AA 174 (271)
++. .++||.++-.|...
T Consensus 220 ~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 220 IKQNMSKPVVGFIAGATA 237 (286)
T ss_pred HHhcCCCCEEEEEecCCC
Confidence 443 67899999888754
No 178
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=33.89 E-value=24 Score=23.45 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=15.0
Q ss_pred CCccccHHHHHHcCCcee
Q 024202 248 RDRFLSAAEAMEFGLIDG 265 (271)
Q Consensus 248 ~~~~lsa~EAle~GLID~ 265 (271)
.+..|+-+||++.||||.
T Consensus 18 tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTEEEEHHHHHHTTSS-H
T ss_pred CCeEEcHHHHHHCCCcCH
Confidence 467799999999999995
No 179
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=32.28 E-value=1.7e+02 Score=24.30 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=30.9
Q ss_pred cCcEEEEcceeChhH------HHHHHHHHHHHhccCCCCCEEEEEeCCCCc--HHHHHHHHHHHH
Q 024202 103 RNRIIFIGQPINSMV------AQRAISQLVTLATIDEDADILMYLNCPGGS--IYSVLAIYDCMS 159 (271)
Q Consensus 103 ~~rII~l~g~Id~~~------a~~ii~~L~~l~~~~~~~~I~L~INSPGGs--V~ag~~Iyd~I~ 159 (271)
..++-|..-||.+.. .+.|++.+..+ .+.-.|.+||-.|. .+.++.||++|+
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456677766776643 34444444433 23567888887765 788999999885
No 180
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=31.99 E-value=2.2e+02 Score=21.45 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=42.5
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeC-CCCcHHHHHHHHHHHHhhC-CceEEEEecccchHHHHHHhc
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIK-PKVGTVCFGVAASQAAIILAG 183 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INS-PGGsV~ag~~Iyd~I~~~~-~pV~tvv~G~AASaa~lIa~a 183 (271)
++.+.|+++...++.+.+.+...-.....+.+++.+.. +-=+......+.+..+.++ ..+..+..|.-....-.+-..
T Consensus 13 v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~~ 92 (109)
T cd07041 13 VLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVEL 92 (109)
T ss_pred EEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHh
Confidence 35589999999999998887543322234566664421 1122333444444554443 234445555544444444433
Q ss_pred C
Q 024202 184 G 184 (271)
Q Consensus 184 g 184 (271)
|
T Consensus 93 g 93 (109)
T cd07041 93 G 93 (109)
T ss_pred C
Confidence 3
No 181
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=30.10 E-value=1e+02 Score=28.55 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=43.8
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEE
Q 024202 105 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVC 169 (271)
Q Consensus 105 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv 169 (271)
||+|+++-+-..--+.+.+.|..++.+.+.+-++..-....|.......+++.|+..+..+.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc
Confidence 67888877766555566666667776654444444454454433445789999999998888874
No 182
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.96 E-value=2.7e+02 Score=21.49 Aligned_cols=81 Identities=9% Similarity=0.078 Sum_probs=51.2
Q ss_pred cchhcccC---cEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCC-CCcHHHHHHHHHHHHhhCC-ceEEEEec
Q 024202 97 LSSVLFRN---RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCP-GGSIYSVLAIYDCMSWIKP-KVGTVCFG 171 (271)
Q Consensus 97 l~s~L~~~---rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSP-GGsV~ag~~Iyd~I~~~~~-pV~tvv~G 171 (271)
+...+++. ++++++..... +.+++.+.. .+ +-.+-|.+- +........+.+.++.... .+..++.|
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~---~~l~~~~~~---~~---pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPP---EEIVEAAKE---ED---ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCH---HHHHHHHHH---cC---CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 44444432 46777765443 466665553 21 224445554 6778888999999999876 68888889
Q ss_pred ccchHH--HHHHhcCCc
Q 024202 172 VAASQA--AIILAGGEK 186 (271)
Q Consensus 172 ~AASaa--~lIa~agdk 186 (271)
.+.+.. .+...++|.
T Consensus 89 ~~~~~~~~~~~~~G~D~ 105 (119)
T cd02067 89 AIVTRDFKFLKEIGVDA 105 (119)
T ss_pred CCCChhHHHHHHcCCeE
Confidence 888764 444455553
No 183
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=28.76 E-value=1.8e+02 Score=27.15 Aligned_cols=64 Identities=20% Similarity=0.099 Sum_probs=38.8
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHh-hCCceEEEEecccc
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW-IKPKVGTVCFGVAA 174 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~-~~~pV~tvv~G~AA 174 (271)
+|-++..-+.+ -.+.+-|.++..++..+.|.||+.+- |.-.. .....+.. .++||.++-.|...
T Consensus 175 ~Vs~Gn~~~~d--v~~~D~l~~l~~Dp~T~~I~lylE~~-~~~~~--~a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 175 CVGIGGDPING--TNFIDVLEAFEEDPETEAIVMIGEIG-GSAEE--EAAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred EEEeCCCcCCC--CCHHHHHHHHhhCCCCcEEEEEEecC-CcHHH--HHHHHHHHcCCCCEEEEEecCCC
Confidence 34466652200 13556677888888899999999953 22211 11223333 37999999888754
No 184
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=28.47 E-value=2.7e+02 Score=21.22 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=48.6
Q ss_pred cEEEEcceeChhHHHHHHHHHHHHhccCC--------CCCEEEEEeC-CCCcHHHHHHHHHHHHhhC-CceEEEEecccc
Q 024202 105 RIIFIGQPINSMVAQRAISQLVTLATIDE--------DADILMYLNC-PGGSIYSVLAIYDCMSWIK-PKVGTVCFGVAA 174 (271)
Q Consensus 105 rII~l~g~Id~~~a~~ii~~L~~l~~~~~--------~~~I~L~INS-PGGsV~ag~~Iyd~I~~~~-~pV~tvv~G~AA 174 (271)
.|+.+.|+++...++.+.+.+..+....+ .+.++|.+.. +.=+..+...|.+..+.++ ..+..+..|..-
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35679999999999999999998776653 3566666533 2334455555666665554 345555555444
Q ss_pred hHHHHHH
Q 024202 175 SQAAIIL 181 (271)
Q Consensus 175 Saa~lIa 181 (271)
..--.+-
T Consensus 91 ~v~~~l~ 97 (117)
T PF01740_consen 91 DVRRILE 97 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 185
>smart00250 PLEC Plectin repeat.
Probab=28.37 E-value=36 Score=21.68 Aligned_cols=19 Identities=42% Similarity=0.447 Sum_probs=15.7
Q ss_pred CCccccHHHHHHcCCceee
Q 024202 248 RDRFLSAAEAMEFGLIDGI 266 (271)
Q Consensus 248 ~~~~lsa~EAle~GLID~I 266 (271)
.+.-||-.||++-||||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 3456899999999999963
No 186
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=27.71 E-value=3.2e+02 Score=22.19 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=36.4
Q ss_pred CCCCchhhHHH---HHHHHHHHHHHHHH---HHHHhCCCHHHHHHHhhCCccccHHHHHHcCCceee
Q 024202 206 SGGHVEDVKRQ---VNEAVISRHKIDRM---YAAFTGQPIEKVQQYTERDRFLSAAEAMEFGLIDGI 266 (271)
Q Consensus 206 ~~G~~~di~~~---~~el~~~~~~i~~i---ya~~tG~~~e~i~~~~~~~~~lsa~EAle~GLID~I 266 (271)
.+|...+..++ .+.+.+..+.|+.+ +.++.|-++.++-+++++.. ..+|++++||+|.-
T Consensus 23 ~Ygd~s~~~DyqeAln~V~e~~eaFd~LPa~iRe~F~N~P~efl~f~~dp~--N~ee~~~Lgl~~~~ 87 (114)
T PF09675_consen 23 EYGDCSSPFDYQEALNMVAEANEAFDELPAHIRERFNNDPEEFLEFLNDPK--NYEEAIKLGLLEPE 87 (114)
T ss_pred cccccCCHHhHHHHHHHHHHHHHHHHHchHHHHHHhCCCHHHHHHHHhCcc--CHHHHHHhccccCc
Confidence 34555433333 33333445555543 44566778888888776443 57899999999753
No 187
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=27.49 E-value=3e+02 Score=22.35 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=34.3
Q ss_pred CcEEEEcceeChh---HHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh
Q 024202 104 NRIIFIGQPINSM---VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI 161 (271)
Q Consensus 104 ~rII~l~g~Id~~---~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~ 161 (271)
.+|..+++.=+.. ..+++.+.+..+.. ..+.+.+..+= ||++.......+.++.-
T Consensus 28 ~~i~~~gg~~d~~~gt~~~~I~~ai~~~~~--~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~ 85 (125)
T TIGR02364 28 VTIISAGGTDDGRLGTSPDKIIEAIEKADN--EADGVLIFYDL-GSAVMNAEMAVELLEDE 85 (125)
T ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhcC--CCCCEEEEEcC-CCcHhHHHHHHHHhccc
Confidence 4555555543332 34555555555432 14678999999 99998877777777643
No 188
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=26.58 E-value=1.7e+02 Score=22.13 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=38.9
Q ss_pred cccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEeccc
Q 024202 101 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 173 (271)
Q Consensus 101 L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~A 173 (271)
+|.+++|+++|+-+......+.+.+ ...-....| -.|+. ||. ........+...+.|+.++.+.-.
T Consensus 1 fFa~~vIlVEG~tE~~~l~~~~~~~---~~~~~~~~i-~ii~~-gG~--~~~~~~~ll~~~~i~~~vi~D~D~ 66 (97)
T cd01026 1 FFADKVILVEGDSEEILLPALAKKL---GLDLDEAGI-SIIPV-GGK--NFKPFIKLLNALGIPVAVLTDLDA 66 (97)
T ss_pred CCCCeEEEEecHHHHHHHHHHHHHh---CCCHHHCCE-EEEEe-CCc--chHHHHHHHHHcCCCEEEEEeCCC
Confidence 4678999999986664444444433 111112232 33455 555 344456778888889888876543
No 189
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=26.31 E-value=1.3e+02 Score=23.45 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=26.4
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCC
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG 145 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPG 145 (271)
++.+.|+||...+..+.+.+...-.....+. +.||.-|
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~ 53 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSG 53 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCC
Confidence 5679999999999999999884333333333 5555544
No 190
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=26.22 E-value=1.2e+02 Score=29.97 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=42.6
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh--CCceEEEEecccch
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI--KPKVGTVCFGVAAS 175 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~--~~pV~tvv~G~AAS 175 (271)
+|-++...|- .+.+-|.++..++..+.|.||+.+-+ .+....++.+.. ++||.++..|....
T Consensus 180 ~vs~Gn~~d~----~~~d~l~~l~~D~~t~~I~ly~E~~~----~~~~f~~aa~~a~~~KPVv~~k~Grs~~ 243 (447)
T TIGR02717 180 FVSLGNKADI----DESDLLEYLADDPDTKVILLYLEGIK----DGRKFLKTAREISKKKPIVVLKSGTSEA 243 (447)
T ss_pred EEECCchhhC----CHHHHHHHHhhCCCCCEEEEEecCCC----CHHHHHHHHHHHcCCCCEEEEecCCChh
Confidence 3445655442 45566778888888999999999732 344556665555 58999998887543
No 191
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=26.02 E-value=1.2e+02 Score=25.80 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEE
Q 024202 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 119 ~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tv 168 (271)
..+++.|..... ..+. +.|| |||-...+.+|.|+++..+.|++=|
T Consensus 55 GelId~i~~a~~--~~dg--iIIN-pga~THtSiAl~DAl~~~~~P~VEV 99 (146)
T PRK13015 55 GELIDWIHEARG--DVAG--IVIN-PGAYTHTSVAIRDALAALELPVIEV 99 (146)
T ss_pred HHHHHHHHHhhh--cCCE--EEEc-chHHhhhHHHHHHHHHcCCCCEEEE
Confidence 467777776532 2344 4455 8999999999999999999997644
No 192
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=26.02 E-value=2.7e+02 Score=26.83 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=44.1
Q ss_pred EEEcceeChhHHHHHHHHHHHHh--c-cCCCCCEEEEEeCCCCcHHHH---HHHHHHHHhhCCceEEEEecccchH
Q 024202 107 IFIGQPINSMVAQRAISQLVTLA--T-IDEDADILMYLNCPGGSIYSV---LAIYDCMSWIKPKVGTVCFGVAASQ 176 (271)
Q Consensus 107 I~l~g~Id~~~a~~ii~~L~~l~--~-~~~~~~I~L~INSPGGsV~ag---~~Iyd~I~~~~~pV~tvv~G~AASa 176 (271)
+.+|-+.|..-++.+...|.... . ++..++=++.|||.+-...+. ..+.+.++...+.+.+++.|.-++.
T Consensus 2 ~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~ 77 (414)
T TIGR01579 2 ETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQS 77 (414)
T ss_pred EeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcccc
Confidence 45777888888888888887522 1 112233467799988777664 4444444544455777777855543
No 193
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=25.99 E-value=4.1e+02 Score=26.16 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=59.6
Q ss_pred EEecC-CC--CCCcchhccc----CcEEEEcceeC-hhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-----HHHH
Q 024202 87 AVMTP-GG--PLDLSSVLFR----NRIIFIGQPIN-SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-----SVLA 153 (271)
Q Consensus 87 ~~~~~-~g--~~dl~s~L~~----~rII~l~g~Id-~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~-----ag~~ 153 (271)
.|.|. .| .-|+-..+-+ -+++.+...+. ++.+..++++|..++..+. -++ |.|-=.||+.. .-..
T Consensus 133 ~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~-~dv-iii~RGGGs~eDL~~Fn~e~ 210 (432)
T TIGR00237 133 GVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNE-CDV-LIVGRGGGSLEDLWSFNDEK 210 (432)
T ss_pred EEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCC-CCE-EEEecCCCCHHHhhhcCcHH
Confidence 45543 33 3565555432 24444444443 3456889999998876432 233 44556788864 4678
Q ss_pred HHHHHHhhCCceEEEEec-ccchHHHHHHhcCCcCcEEeccCcE
Q 024202 154 IYDCMSWIKPKVGTVCFG-VAASQAAIILAGGEKGMRYAMPNAR 196 (271)
Q Consensus 154 Iyd~I~~~~~pV~tvv~G-~AASaa~lIa~agdkg~R~a~PnS~ 196 (271)
+..+|-.++.||++-+.- .=.+.+ =..+|. |...|.+-
T Consensus 211 ~~rai~~~~~Pvis~iGHe~D~ti~---D~vAd~--ra~TPtaa 249 (432)
T TIGR00237 211 VARAIFLSKIPIISAVGHETDFTIS---DFVADL--RAPTPSAA 249 (432)
T ss_pred HHHHHHcCCCCEEEecCcCCCccHH---HHhhhc--cCCCcHHH
Confidence 889999999999765532 222222 233455 77777653
No 194
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.55 E-value=1.1e+02 Score=27.24 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhh
Q 024202 118 AQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI 161 (271)
Q Consensus 118 a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~ 161 (271)
+..+.+++..+..-...+.|-+|+++++|.|..+.-|-++++.=
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~g 74 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDG 74 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcC
Confidence 44455555544433346899999999999999987777777664
No 195
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=24.10 E-value=1.5e+02 Score=24.96 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEe
Q 024202 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF 170 (271)
Q Consensus 119 ~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~ 170 (271)
..+++.|.....+ .+.|+ || |||-...+.+|+|+|+.++.|++=|-.
T Consensus 54 Gelid~I~~a~~~--~dgiI--IN-pga~thtS~Ai~DAl~~~~~P~vEVHi 100 (140)
T PF01220_consen 54 GELIDWIHEARDD--VDGII--IN-PGAYTHTSIAIRDALKAISIPVVEVHI 100 (140)
T ss_dssp HHHHHHHHHHTCT--TSEEE--EE--GGGGHT-HHHHHHHHCCTS-EEEEES
T ss_pred HHHHHHHHHHHhh--CCEEE--Ec-cchhccccHHHHHHHHcCCCCEEEEEc
Confidence 4677777765432 45544 55 899999999999999999999765533
No 196
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=23.00 E-value=2e+02 Score=26.75 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=44.8
Q ss_pred ccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHH--HHHHHHH
Q 024202 102 FRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS--VLAIYDC 157 (271)
Q Consensus 102 ~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~a--g~~Iyd~ 157 (271)
+..++.=..+.++...-..+.++|..|+++...+-.+|.|.|-+|.--+ +..++|.
T Consensus 32 ~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 32 LSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred ccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 3445555778889988999999999999988888889999999988654 4556665
No 197
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=22.66 E-value=3.2e+02 Score=25.26 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=40.7
Q ss_pred hhcccCcEEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEEec
Q 024202 99 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 99 s~L~~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G 171 (271)
.-+++..|++++..+.+...+...+.+ + ..++.|.|-| -+.|..+..+....+..+.+|+.++.+
T Consensus 171 gg~lrP~VV~FGE~lp~~~~~~a~~~~---~----~aDlllviGT-Sl~V~pa~~l~~~a~~~g~~vi~IN~~ 235 (271)
T PTZ00409 171 GGIFKPNVILFGEVIPKSLLKQAEKEI---D----KCDLLLVVGT-SSSVSTATNLCYRAHRKKKKIVEVNIS 235 (271)
T ss_pred CCcccCcEEEeCCcCCHHHHHHHHHHH---H----cCCEEEEECC-CCcccCHHHHHHHHHHcCCCEEEECCC
Confidence 456788888888888775444433322 2 2356777766 456777777776666666777666543
No 198
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.54 E-value=3.7e+02 Score=24.85 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=52.2
Q ss_pred EEEEcceeC-hhHHHHHHHHHHHHhccCC--CCCEEEEEeCCCCcH-----HHHHHHHHHHHhhCCceEEEEecccchHH
Q 024202 106 IIFIGQPIN-SMVAQRAISQLVTLATIDE--DADILMYLNCPGGSI-----YSVLAIYDCMSWIKPKVGTVCFGVAASQA 177 (271)
Q Consensus 106 II~l~g~Id-~~~a~~ii~~L~~l~~~~~--~~~I~L~INSPGGsV-----~ag~~Iyd~I~~~~~pV~tvv~G~AASaa 177 (271)
+.++.-.+. ++.+..|+++|..+..... .-++ |.|-=.||+. +.-..+..+|-.++.||++-+.-----
T Consensus 44 ~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dv-iii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~-- 120 (319)
T PF02601_consen 44 IILYPASVQGEGAAASIVSALRKANEMGQADDFDV-IIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDF-- 120 (319)
T ss_pred EEEEeccccccchHHHHHHHHHHHHhccccccccE-EEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCc--
Confidence 444444442 3567889999999876531 1233 3345567774 456789999999999986655322111
Q ss_pred HHHHhcCCcCcEEeccCcE
Q 024202 178 AIILAGGEKGMRYAMPNAR 196 (271)
Q Consensus 178 ~lIa~agdkg~R~a~PnS~ 196 (271)
++.=..+|. |...|++-
T Consensus 121 ti~D~vAd~--ra~TPtaa 137 (319)
T PF02601_consen 121 TIADFVADL--RAPTPTAA 137 (319)
T ss_pred hHHHHHHHh--hCCCHHHH
Confidence 222244565 77778654
No 199
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=22.35 E-value=1.5e+02 Score=25.20 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEE
Q 024202 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 119 ~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tv 168 (271)
..+++.|..... ..+.|+ || ||+-...+.+|.|+++..+.|++=|
T Consensus 55 GelId~I~~a~~--~~dgii--IN-pga~THtSiAl~DAl~~~~~P~VEV 99 (146)
T PRK05395 55 GELIDRIHEARD--GADGII--IN-PGAYTHTSVALRDALAAVSIPVIEV 99 (146)
T ss_pred HHHHHHHHhccc--CCcEEE--EC-chHHHHHHHHHHHHHHcCCCCEEEE
Confidence 467777776432 244443 55 8999999999999999999997644
No 200
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.93 E-value=1.8e+02 Score=21.83 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=25.0
Q ss_pred EEEEcceeChhHHHHHHHHHHHHhccCCCCCEEEEE
Q 024202 106 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 141 (271)
Q Consensus 106 II~l~g~Id~~~a~~ii~~L~~l~~~~~~~~I~L~I 141 (271)
++.+.|+++-.+++.+.+++..+-..+..+.+++.+
T Consensus 11 ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDl 46 (100)
T cd06844 11 VVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDI 46 (100)
T ss_pred EEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 466899999999999999887544333345555533
No 201
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.51 E-value=5.2e+02 Score=26.57 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=64.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhhCCceEEEE--eccc-----chHHHHHHhcCCcCcEEeccCcEEeeecCCCCCCCCc
Q 024202 138 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVC--FGVA-----ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHV 210 (271)
Q Consensus 138 ~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv--~G~A-----ASaa~lIa~agdkg~R~a~PnS~imiHqp~~g~~G~~ 210 (271)
.+.|=+|+=+|+--..|.++=+.-++-|+++| .|+. |=.+++++...- +++|.-.-+--.|-.
T Consensus 353 LvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkf----------rVLIAACDTFRsGAv 422 (587)
T KOG0781|consen 353 LVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKF----------RVLIAACDTFRSGAV 422 (587)
T ss_pred HHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCc----------eEEEEeccchhhhHH
Confidence 34566788887766555555444434455555 3444 346788876433 345555545556888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 024202 211 EDVKRQVNEAVISRHKIDRMYAAFTGQPIEKVQ 243 (271)
Q Consensus 211 ~di~~~~~el~~~~~~i~~iya~~tG~~~e~i~ 243 (271)
+.++...+.+..+...+.++|.+..|++...|.
T Consensus 423 EQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 423 EQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred HHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 999999988888888888999999988866654
No 202
>PRK14637 hypothetical protein; Provisional
Probab=21.26 E-value=2e+02 Score=24.33 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=36.4
Q ss_pred EEEc--ceeChhHHHHHHHHHHH-HhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEEE
Q 024202 107 IFIG--QPINSMVAQRAISQLVT-LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVC 169 (271)
Q Consensus 107 I~l~--g~Id~~~a~~ii~~L~~-l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tvv 169 (271)
||+. +.|+-+.+..+.++|.. |+...+....+|.+.|||=+= .=...-+..+..+.+|.+..
T Consensus 41 V~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldR-pL~~~~~f~r~~G~~V~V~l 105 (151)
T PRK14637 41 AVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIER-VIKNAAEFSIFVGETVKVWF 105 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCC-CCCCHHHHHHhCCCEEEEEE
Confidence 4453 33777777777777653 232222456799999999751 11223455666666665543
No 203
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.15 E-value=2.3e+02 Score=24.14 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=33.1
Q ss_pred ceeChhHHHHHHHHHHH-HhccCCC-CCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEE
Q 024202 111 QPINSMVAQRAISQLVT-LATIDED-ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 111 g~Id~~~a~~ii~~L~~-l~~~~~~-~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tv 168 (271)
|.++-+.++.+.+++.. |+..++. ..-+|.+.|||-+= .-...-+.-++.+..|...
T Consensus 47 g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGldR-pL~~~~~f~r~~G~~Vkv~ 105 (153)
T COG0779 47 GGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLDR-PLKTAEHFARFIGEKVKVK 105 (153)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCCC-CcCCHHHHHHhcCcEEEEE
Confidence 66766667777777664 3434443 36779999999761 1112234445555554433
No 204
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=21.05 E-value=1.7e+02 Score=24.75 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEE
Q 024202 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 119 ~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tv 168 (271)
..+++.|..... ..+. +.|| |||-...+.+|.|+++..+.|++=|
T Consensus 53 GelId~i~~a~~--~~dg--iIIN-pga~THtSiAl~DAl~~~~~P~vEV 97 (141)
T TIGR01088 53 GQLIDKIHEAEG--QYDG--IIIN-PGALTHTSVALRDALAAVSLPVVEV 97 (141)
T ss_pred HHHHHHHHhccc--cCCE--EEEc-ChHHhhhHHHHHHHHHcCCCCEEEE
Confidence 467777776432 2344 4455 8999999999999999999987644
No 205
>PRK14635 hypothetical protein; Provisional
Probab=20.82 E-value=2.1e+02 Score=24.30 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=31.4
Q ss_pred ceeChhHHHHHHHHHHH-HhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceE
Q 024202 111 QPINSMVAQRAISQLVT-LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVG 166 (271)
Q Consensus 111 g~Id~~~a~~ii~~L~~-l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~ 166 (271)
|.|+-+.+..+.+.+.. |+..++...-.|.+.|||=+= .=..--+..++.+.+|.
T Consensus 48 ~gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGldR-pL~~~~~~~r~~G~~v~ 103 (162)
T PRK14635 48 GSVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAER-KLRLPEDLDRFRGIPVR 103 (162)
T ss_pred CCcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCCC-cCCCHHHHHHhCCCEEE
Confidence 34666667777666654 333344568899999999541 11122344455555554
No 206
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.71 E-value=76 Score=27.47 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=19.7
Q ss_pred CC-CcHHHHH------HHHHHHHhhCCceEEEEec
Q 024202 144 PG-GSIYSVL------AIYDCMSWIKPKVGTVCFG 171 (271)
Q Consensus 144 PG-GsV~ag~------~Iyd~I~~~~~pV~tvv~G 171 (271)
|| |...+++ .+.+.++..+.||..+|.|
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG 79 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLG 79 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHH
Confidence 88 7766653 3567777777898777666
No 207
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.41 E-value=4.8e+02 Score=25.39 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=52.2
Q ss_pred cEEEEcceeC-hhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCcHH-----HHHHHHHHHHhhCCceEEEEecccchHHH
Q 024202 105 RIIFIGQPIN-SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-----SVLAIYDCMSWIKPKVGTVCFGVAASQAA 178 (271)
Q Consensus 105 rII~l~g~Id-~~~a~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~-----ag~~Iyd~I~~~~~pV~tvv~G~AASaa~ 178 (271)
++.++.-.+. ++.+..|+++|..++..+ -+++ .|-=.||++. .-..+..+|-.++.||++-+.---- =+
T Consensus 164 ~~~~~~~~vQG~~A~~~i~~al~~~~~~~--~Dvi-ii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D--~t 238 (438)
T PRK00286 164 EVIIYPTLVQGEGAAASIVAAIERANARG--EDVL-IVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETD--FT 238 (438)
T ss_pred eEEEecCcCcCccHHHHHHHHHHHhcCCC--CCEE-EEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCC--cc
Confidence 4555555553 346788999999877532 2443 3455688864 4578899999999998765432111 12
Q ss_pred HHHhcCCcCcEEeccCcE
Q 024202 179 IILAGGEKGMRYAMPNAR 196 (271)
Q Consensus 179 lIa~agdkg~R~a~PnS~ 196 (271)
+.=..+|. |...|++-
T Consensus 239 l~D~vAd~--ra~TPtaa 254 (438)
T PRK00286 239 IADFVADL--RAPTPTAA 254 (438)
T ss_pred HHHHhhhc--cCCChHHH
Confidence 22244566 77777654
No 208
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.36 E-value=2.4e+02 Score=22.93 Aligned_cols=53 Identities=15% Similarity=0.341 Sum_probs=28.4
Q ss_pred CCCchhhHHHHH-HHHHHHHHHHHHHHHHhC---------CCHHHHHHHhhCCccccHHHHHHc
Q 024202 207 GGHVEDVKRQVN-EAVISRHKIDRMYAAFTG---------QPIEKVQQYTERDRFLSAAEAMEF 260 (271)
Q Consensus 207 ~G~~~di~~~~~-el~~~~~~i~~iya~~tG---------~~~e~i~~~~~~~~~lsa~EAle~ 260 (271)
.|+.+++..+.. ..--++.+++++..+--. ....+|.+.++++ -+|++||++.
T Consensus 49 rGnlKe~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~G-eIs~eeA~~~ 111 (113)
T PF09862_consen 49 RGNLKEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKG-EISVEEALEI 111 (113)
T ss_pred cCCHHHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcC-CCCHHHHHHH
Confidence 567666654321 011245555555443221 2345566666655 4899999873
No 209
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=20.34 E-value=2.3e+02 Score=23.94 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEeCCCCcHHHHHHHHHHHHhhCCceEEE
Q 024202 119 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 168 (271)
Q Consensus 119 ~~ii~~L~~l~~~~~~~~I~L~INSPGGsV~ag~~Iyd~I~~~~~pV~tv 168 (271)
..+++.|..... ..+.|+ || |||-...+.+|.|+++..+.|++=|
T Consensus 53 gelid~I~~a~~--~~dgiI--IN-pga~THtSvAi~DAl~~~~~P~VEV 97 (140)
T cd00466 53 GELIDWIHEARD--GADGII--IN-PGAYTHTSIALRDALAAVSIPVIEV 97 (140)
T ss_pred HHHHHHHHHhhc--cCcEEE--Ec-chHHHHHHHHHHHHHHcCCCCEEEE
Confidence 467777776532 244544 55 8999999999999999999987544
No 210
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.15 E-value=3.7e+02 Score=23.68 Aligned_cols=58 Identities=16% Similarity=0.013 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHh-ccCCCCCEEEEE---eCCCCcHHHHHHHHHHHHhhCCceEEEEecc
Q 024202 115 SMVAQRAISQLVTLA-TIDEDADILMYL---NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV 172 (271)
Q Consensus 115 ~~~a~~ii~~L~~l~-~~~~~~~I~L~I---NSPGGsV~ag~~Iyd~I~~~~~pV~tvv~G~ 172 (271)
+.+++.+--.+..++ ..+....++|.+ |...|.+.+-.+-...-+..+.+|+|+..|.
T Consensus 91 ~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~ 152 (191)
T cd01455 91 DHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGS 152 (191)
T ss_pred ccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecC
Confidence 466678888888886 555445566666 3234445544332344456677888888875
No 211
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=20.03 E-value=2.1e+02 Score=18.75 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHhCCCHHHHHHHhhCCccccHHHHHH
Q 024202 229 RMYAAFTGQPIEKVQQYTERDRFLSAAEAME 259 (271)
Q Consensus 229 ~iya~~tG~~~e~i~~~~~~~~~lsa~EAle 259 (271)
.-+++.+|.+...+.++....+..+.+.+..
T Consensus 13 ~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 13 KELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 4588889999999999888778888887754
Done!