Query 024203
Match_columns 271
No_of_seqs 348 out of 4123
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.9 2E-22 4.3E-27 190.6 14.1 167 20-213 367-533 (623)
2 PLN00113 leucine-rich repeat r 99.9 3.8E-21 8.2E-26 191.3 12.9 137 71-212 475-611 (968)
3 PLN00113 leucine-rich repeat r 99.8 2.4E-20 5.1E-25 185.6 16.1 174 20-206 24-199 (968)
4 PLN03150 hypothetical protein; 99.6 4.6E-15 1E-19 140.7 12.0 111 72-182 419-530 (623)
5 KOG0617 Ras suppressor protein 99.6 4.9E-17 1.1E-21 125.9 -2.2 137 63-207 48-185 (264)
6 KOG0617 Ras suppressor protein 99.6 6.9E-17 1.5E-21 125.1 -4.2 132 69-208 31-163 (264)
7 KOG0444 Cytoskeletal regulator 99.5 1.9E-16 4.2E-21 143.6 -7.3 144 64-215 238-382 (1255)
8 KOG4194 Membrane glycoprotein 99.5 3.8E-15 8.2E-20 134.2 -0.4 125 57-181 255-379 (873)
9 KOG4194 Membrane glycoprotein 99.4 8.1E-15 1.8E-19 132.1 -1.0 146 57-207 279-428 (873)
10 KOG0472 Leucine-rich repeat pr 99.3 1.7E-13 3.6E-18 118.9 0.6 112 66-180 430-541 (565)
11 KOG0472 Leucine-rich repeat pr 99.3 3.8E-14 8.2E-19 122.8 -3.5 124 72-206 184-308 (565)
12 KOG0444 Cytoskeletal regulator 99.3 3E-13 6.5E-18 123.2 -3.0 138 62-207 213-351 (1255)
13 KOG4237 Extracellular matrix p 99.3 5.9E-13 1.3E-17 115.2 -1.1 69 38-108 60-129 (498)
14 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.5E-17 118.0 -3.1 133 63-206 113-245 (722)
15 PF14580 LRR_9: Leucine-rich r 99.2 1.9E-11 4.1E-16 97.3 4.0 126 71-202 19-147 (175)
16 KOG0618 Serine/threonine phosp 99.2 3.1E-12 6.7E-17 120.8 -1.6 129 70-207 358-488 (1081)
17 KOG1259 Nischarin, modulator o 99.1 1.7E-11 3.8E-16 103.1 -0.9 130 70-208 283-412 (490)
18 KOG4237 Extracellular matrix p 99.1 1.8E-11 3.9E-16 106.1 -1.2 139 72-215 68-208 (498)
19 PRK15370 E3 ubiquitin-protein 99.0 4.1E-10 8.9E-15 108.3 6.0 62 119-187 325-386 (754)
20 cd00116 LRR_RI Leucine-rich re 99.0 6.3E-11 1.4E-15 103.4 -0.1 141 67-207 77-233 (319)
21 KOG0532 Leucine-rich repeat (L 99.0 1.2E-10 2.5E-15 105.3 0.9 121 62-189 135-255 (722)
22 PF14580 LRR_9: Leucine-rich r 99.0 5.3E-10 1.2E-14 88.9 3.8 109 91-207 15-125 (175)
23 PF13855 LRR_8: Leucine rich r 98.9 5.8E-10 1.2E-14 73.2 2.6 59 120-178 2-60 (61)
24 PRK15387 E3 ubiquitin-protein 98.9 1.7E-09 3.8E-14 103.8 6.8 99 96-208 343-458 (788)
25 PRK15370 E3 ubiquitin-protein 98.9 3.4E-09 7.5E-14 102.0 8.4 102 71-185 199-300 (754)
26 PF13855 LRR_8: Leucine rich r 98.9 7.1E-10 1.5E-14 72.8 2.4 59 96-154 2-60 (61)
27 KOG0618 Serine/threonine phosp 98.9 2.5E-10 5.5E-15 108.2 0.1 108 67-178 379-487 (1081)
28 PLN03210 Resistant to P. syrin 98.9 8.7E-09 1.9E-13 104.6 10.2 128 71-208 778-906 (1153)
29 PLN03210 Resistant to P. syrin 98.8 1.6E-08 3.5E-13 102.6 11.2 110 73-186 591-700 (1153)
30 cd00116 LRR_RI Leucine-rich re 98.8 7.5E-10 1.6E-14 96.6 0.5 137 71-207 137-290 (319)
31 PRK15387 E3 ubiquitin-protein 98.8 6E-09 1.3E-13 100.2 6.1 108 72-189 343-467 (788)
32 KOG1259 Nischarin, modulator o 98.8 7.2E-10 1.6E-14 93.4 -1.4 116 65-186 301-417 (490)
33 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.4E-13 92.2 3.8 107 70-180 115-222 (394)
34 COG4886 Leucine-rich repeat (L 98.6 1.5E-08 3.2E-13 91.4 2.6 136 63-207 131-289 (394)
35 KOG1859 Leucine-rich repeat pr 98.6 5.9E-10 1.3E-14 103.4 -8.5 130 71-210 164-294 (1096)
36 KOG4579 Leucine-rich repeat (L 98.5 5.5E-09 1.2E-13 78.5 -2.9 109 73-186 29-141 (177)
37 KOG4658 Apoptotic ATPase [Sign 98.3 4.1E-07 8.9E-12 89.3 3.7 107 71-178 545-653 (889)
38 KOG4579 Leucine-rich repeat (L 98.3 6.4E-08 1.4E-12 72.9 -1.9 112 70-185 52-164 (177)
39 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 3.9E-11 52.4 3.3 36 144-180 2-37 (44)
40 PF12799 LRR_4: Leucine Rich r 98.2 2E-06 4.3E-11 52.2 3.0 36 120-156 2-37 (44)
41 KOG4658 Apoptotic ATPase [Sign 98.1 1.9E-06 4.1E-11 84.7 4.0 126 71-203 523-650 (889)
42 KOG0531 Protein phosphatase 1, 98.1 9.2E-07 2E-11 80.4 0.4 107 68-180 92-199 (414)
43 KOG3207 Beta-tubulin folding c 98.0 1.1E-06 2.4E-11 77.7 0.5 112 92-207 219-338 (505)
44 KOG1859 Leucine-rich repeat pr 98.0 9.6E-08 2.1E-12 89.1 -6.4 106 69-180 185-292 (1096)
45 KOG3207 Beta-tubulin folding c 98.0 1.2E-06 2.7E-11 77.4 0.2 140 67-207 142-313 (505)
46 KOG0531 Protein phosphatase 1, 98.0 1.9E-06 4.1E-11 78.4 1.3 104 71-180 72-175 (414)
47 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 4E-10 63.5 4.6 104 71-177 42-150 (233)
48 KOG1909 Ran GTPase-activating 97.7 9E-06 1.9E-10 70.1 -0.2 135 70-204 91-250 (382)
49 PF08263 LRRNT_2: Leucine rich 97.5 0.00017 3.8E-09 43.4 4.4 41 24-69 2-43 (43)
50 KOG2739 Leucine-rich acidic nu 97.5 5.4E-05 1.2E-09 63.0 2.6 119 54-176 26-152 (260)
51 KOG1644 U2-associated snRNP A' 97.5 0.00018 4E-09 57.8 5.0 106 95-204 42-149 (233)
52 PRK15386 type III secretion pr 97.2 0.0012 2.5E-08 59.5 7.3 52 71-129 52-104 (426)
53 KOG3665 ZYG-1-like serine/thre 97.2 0.00021 4.5E-09 68.8 2.7 125 63-189 139-272 (699)
54 KOG3665 ZYG-1-like serine/thre 97.2 0.00012 2.6E-09 70.5 0.9 134 71-206 122-261 (699)
55 KOG2739 Leucine-rich acidic nu 97.1 0.00039 8.5E-09 58.0 3.2 92 86-181 34-130 (260)
56 KOG1909 Ran GTPase-activating 97.0 0.00013 2.8E-09 63.1 -0.9 138 69-206 118-281 (382)
57 KOG2982 Uncharacterized conser 96.9 0.00077 1.7E-08 57.5 3.0 137 69-208 95-262 (418)
58 PRK15386 type III secretion pr 96.8 0.0038 8.1E-08 56.2 6.9 95 71-177 72-187 (426)
59 KOG2123 Uncharacterized conser 96.3 0.00026 5.5E-09 59.8 -3.5 78 93-173 39-123 (388)
60 KOG2120 SCF ubiquitin ligase, 96.3 0.00023 5E-09 60.6 -4.0 61 72-132 211-273 (419)
61 COG5238 RNA1 Ran GTPase-activa 96.0 0.0075 1.6E-07 51.0 3.9 107 69-180 90-227 (388)
62 PF00560 LRR_1: Leucine Rich R 95.9 0.0031 6.8E-08 31.9 0.7 11 146-156 3-13 (22)
63 PF13306 LRR_5: Leucine rich r 95.9 0.028 6E-07 41.9 6.1 105 67-176 8-112 (129)
64 KOG0473 Leucine-rich repeat pr 95.9 0.00018 3.9E-09 59.2 -6.3 85 69-156 40-124 (326)
65 KOG0473 Leucine-rich repeat pr 95.8 0.00036 7.7E-09 57.5 -4.6 89 89-180 36-124 (326)
66 PF00560 LRR_1: Leucine Rich R 95.8 0.0028 6E-08 32.1 0.2 19 121-140 2-20 (22)
67 KOG2982 Uncharacterized conser 95.7 0.0042 9E-08 53.2 1.0 87 94-180 70-159 (418)
68 PF01102 Glycophorin_A: Glycop 95.6 0.022 4.8E-07 42.3 4.3 21 220-240 60-80 (122)
69 KOG2120 SCF ubiquitin ligase, 94.7 0.00028 6.2E-09 60.1 -8.9 85 72-156 186-273 (419)
70 PF13306 LRR_5: Leucine rich r 94.0 0.077 1.7E-06 39.4 3.9 100 65-169 29-128 (129)
71 PF13504 LRR_7: Leucine rich r 93.8 0.04 8.7E-07 25.9 1.3 13 168-180 2-14 (17)
72 COG5238 RNA1 Ran GTPase-activa 93.7 0.082 1.8E-06 44.9 3.9 114 90-208 87-227 (388)
73 KOG2123 Uncharacterized conser 93.0 0.0047 1E-07 52.4 -4.5 88 95-187 19-108 (388)
74 smart00369 LRR_TYP Leucine-ric 92.5 0.13 2.9E-06 26.8 2.3 19 167-186 2-20 (26)
75 smart00370 LRR Leucine-rich re 92.5 0.13 2.9E-06 26.8 2.3 19 167-186 2-20 (26)
76 PF04478 Mid2: Mid2 like cell 91.1 0.021 4.6E-07 43.7 -2.6 38 226-263 51-88 (154)
77 smart00369 LRR_TYP Leucine-ric 90.7 0.23 4.9E-06 25.9 1.9 13 96-108 3-15 (26)
78 smart00370 LRR Leucine-rich re 90.7 0.23 4.9E-06 25.9 1.9 13 96-108 3-15 (26)
79 PF02439 Adeno_E3_CR2: Adenovi 90.7 0.62 1.3E-05 26.8 3.7 29 227-255 6-34 (38)
80 PF14575 EphA2_TM: Ephrin type 90.6 0.29 6.3E-06 33.2 2.8 12 240-251 16-27 (75)
81 PF07213 DAP10: DAP10 membrane 89.7 1.1 2.4E-05 30.4 5.0 31 219-249 29-59 (79)
82 PTZ00382 Variant-specific surf 88.7 0.064 1.4E-06 38.2 -1.6 21 217-237 59-79 (96)
83 PF08693 SKG6: Transmembrane a 87.3 0.051 1.1E-06 31.8 -2.3 9 243-251 30-38 (40)
84 PF05568 ASFV_J13L: African sw 86.4 1.3 2.8E-05 33.6 4.2 18 240-257 43-60 (189)
85 PTZ00046 rifin; Provisional 85.1 1 2.2E-05 39.8 3.5 21 234-254 325-345 (358)
86 TIGR01477 RIFIN variant surfac 84.5 1.1 2.4E-05 39.4 3.5 21 234-254 320-340 (353)
87 PF13516 LRR_6: Leucine Rich r 83.8 0.19 4E-06 25.7 -1.0 13 144-156 3-15 (24)
88 PF12191 stn_TNFRSF12A: Tumour 82.2 0.43 9.4E-06 35.3 0.1 12 245-256 98-109 (129)
89 smart00364 LRR_BAC Leucine-ric 82.0 0.98 2.1E-05 23.8 1.3 17 168-185 3-19 (26)
90 PF05454 DAG1: Dystroglycan (D 81.6 0.46 9.9E-06 40.9 0.0 19 239-257 161-179 (290)
91 PF01102 Glycophorin_A: Glycop 81.4 3.4 7.4E-05 30.8 4.6 25 218-242 61-85 (122)
92 TIGR00864 PCC polycystin catio 79.1 0.98 2.1E-05 49.6 1.4 34 149-182 1-34 (2740)
93 smart00365 LRR_SD22 Leucine-ri 78.2 2.1 4.6E-05 22.5 1.9 14 95-108 2-15 (26)
94 KOG4308 LRR-containing protein 77.3 0.037 8.1E-07 51.2 -8.5 136 72-207 145-302 (478)
95 KOG1947 Leucine rich repeat pr 76.5 0.94 2E-05 41.5 0.4 89 91-179 210-307 (482)
96 PF01299 Lamp: Lysosome-associ 75.8 2.4 5.2E-05 37.0 2.8 11 226-236 272-282 (306)
97 PHA03286 envelope glycoprotein 75.0 4.2 9E-05 36.9 4.0 44 224-268 391-434 (492)
98 PF10873 DUF2668: Protein of u 74.7 2.3 4.9E-05 32.3 2.0 29 219-247 56-84 (155)
99 PF15050 SCIMP: SCIMP protein 74.1 7 0.00015 28.7 4.2 6 246-251 31-36 (133)
100 PTZ00370 STEVOR; Provisional 72.9 4.2 9.1E-05 34.7 3.3 16 240-255 269-284 (296)
101 smart00368 LRR_RI Leucine rich 72.7 3.4 7.3E-05 22.0 1.8 12 121-132 4-15 (28)
102 PF06365 CD34_antigen: CD34/Po 71.0 3.4 7.3E-05 33.6 2.3 25 227-251 104-128 (202)
103 PF12768 Rax2: Cortical protei 70.1 8 0.00017 33.3 4.5 9 261-269 272-280 (281)
104 PHA03265 envelope glycoprotein 69.9 1.6 3.5E-05 38.2 0.3 25 1-25 8-32 (402)
105 TIGR01478 STEVOR variant surfa 69.8 5.7 0.00012 33.9 3.5 16 240-255 273-288 (295)
106 PF15065 NCU-G1: Lysosomal tra 69.2 2.9 6.3E-05 37.1 1.7 20 219-238 313-332 (350)
107 PF03302 VSP: Giardia variant- 68.8 2 4.4E-05 38.9 0.7 22 217-238 360-381 (397)
108 PF04689 S1FA: DNA binding pro 68.0 5 0.00011 25.9 2.1 33 219-251 8-40 (69)
109 PF14851 FAM176: FAM176 family 65.8 11 0.00023 29.4 4.0 24 225-248 24-47 (153)
110 KOG3864 Uncharacterized conser 64.4 0.98 2.1E-05 36.8 -2.0 36 71-106 101-136 (221)
111 PF15176 LRR19-TM: Leucine-ric 61.5 25 0.00054 25.1 4.8 29 220-248 14-42 (102)
112 PF06679 DUF1180: Protein of u 59.9 16 0.00035 28.7 4.1 12 240-251 110-121 (163)
113 PF06305 DUF1049: Protein of u 59.3 14 0.00031 23.9 3.3 14 223-236 20-33 (68)
114 PF06697 DUF1191: Protein of u 58.5 3.9 8.5E-05 34.9 0.5 18 87-104 71-88 (278)
115 PF15048 OSTbeta: Organic solu 58.3 17 0.00036 27.0 3.6 8 224-231 35-42 (125)
116 PF02009 Rifin_STEVOR: Rifin/s 57.3 10 0.00022 33.0 2.8 9 246-254 280-288 (299)
117 KOG1947 Leucine rich repeat pr 56.9 3.1 6.7E-05 38.0 -0.4 111 94-207 187-307 (482)
118 PF14979 TMEM52: Transmembrane 55.9 53 0.0011 25.2 6.0 24 224-248 20-43 (154)
119 PF14610 DUF4448: Protein of u 55.6 3 6.5E-05 33.6 -0.6 18 235-252 168-185 (189)
120 TIGR01478 STEVOR variant surfa 55.5 17 0.00037 31.1 3.8 32 225-257 262-293 (295)
121 KOG3864 Uncharacterized conser 55.5 1.5 3.3E-05 35.7 -2.3 81 96-176 102-185 (221)
122 PF10577 UPF0560: Uncharacteri 54.9 17 0.00036 35.7 4.0 7 182-188 208-214 (807)
123 PTZ00370 STEVOR; Provisional 53.3 18 0.00038 31.1 3.5 33 225-258 258-290 (296)
124 PF05808 Podoplanin: Podoplani 53.0 4.5 9.7E-05 31.5 0.0 31 217-247 122-152 (162)
125 PF01372 Melittin: Melittin; 52.1 19 0.00041 18.5 2.2 18 237-254 8-25 (26)
126 PF00558 Vpu: Vpu protein; In 50.7 24 0.00052 24.2 3.2 10 225-234 5-14 (81)
127 PF12768 Rax2: Cortical protei 50.4 8.3 0.00018 33.2 1.2 9 97-105 66-74 (281)
128 PF11770 GAPT: GRB2-binding ad 49.9 11 0.00023 29.0 1.6 23 228-250 13-35 (158)
129 KOG3763 mRNA export factor TAP 49.8 8.4 0.00018 36.1 1.2 61 70-132 217-283 (585)
130 PF06024 DUF912: Nucleopolyhed 48.8 7.7 0.00017 27.8 0.7 9 250-258 85-93 (101)
131 PF04277 OAD_gamma: Oxaloaceta 48.5 52 0.0011 22.0 4.8 11 226-236 7-17 (79)
132 PF14575 EphA2_TM: Ephrin type 46.7 29 0.00062 23.4 3.2 20 238-257 11-30 (75)
133 KOG3763 mRNA export factor TAP 45.7 13 0.00028 35.0 1.7 61 118-181 217-284 (585)
134 PF15050 SCIMP: SCIMP protein 44.5 35 0.00076 25.2 3.5 17 242-258 24-40 (133)
135 PF12301 CD99L2: CD99 antigen 43.0 40 0.00086 26.7 3.9 31 224-255 115-145 (169)
136 PF03229 Alpha_GJ: Alphavirus 42.8 39 0.00084 24.8 3.4 8 228-235 87-94 (126)
137 TIGR00864 PCC polycystin catio 42.0 19 0.00042 40.3 2.5 32 125-156 1-32 (2740)
138 PTZ00046 rifin; Provisional 41.6 29 0.00062 30.9 3.2 32 229-260 317-348 (358)
139 TIGR01477 RIFIN variant surfac 41.3 29 0.00063 30.8 3.2 32 229-260 312-343 (353)
140 PF12606 RELT: Tumour necrosis 40.6 45 0.00098 20.6 3.0 12 249-260 24-35 (50)
141 KOG4308 LRR-containing protein 40.0 1.3 2.8E-05 41.2 -5.7 112 70-181 171-304 (478)
142 KOG1094 Discoidin domain recep 39.4 28 0.0006 33.4 2.8 14 163-176 268-281 (807)
143 PF14914 LRRC37AB_C: LRRC37A/B 38.8 62 0.0013 24.9 4.1 11 225-235 121-131 (154)
144 PF05568 ASFV_J13L: African sw 38.0 60 0.0013 24.8 3.9 22 235-256 41-62 (189)
145 PF02480 Herpes_gE: Alphaherpe 37.6 11 0.00024 34.7 0.0 12 244-255 370-381 (439)
146 PF02529 PetG: Cytochrome B6-F 37.2 82 0.0018 18.0 3.9 22 226-247 6-27 (37)
147 PF12877 DUF3827: Domain of un 36.2 41 0.00089 32.3 3.4 22 217-238 263-284 (684)
148 PF10954 DUF2755: Protein of u 34.0 88 0.0019 21.8 3.9 11 220-230 68-78 (100)
149 KOG4550 Predicted membrane pro 31.1 44 0.00095 30.5 2.7 22 240-261 576-597 (606)
150 PF06809 NPDC1: Neural prolife 30.4 29 0.00062 30.3 1.4 9 21-29 40-48 (341)
151 PF12259 DUF3609: Protein of u 29.7 29 0.00062 31.1 1.3 9 243-251 317-325 (361)
152 PF15431 TMEM190: Transmembran 29.5 86 0.0019 22.8 3.4 33 220-252 55-87 (134)
153 CHL00008 petG cytochrome b6/f 29.5 1.1E+02 0.0025 17.3 3.5 21 227-247 7-27 (37)
154 PF03229 Alpha_GJ: Alphavirus 28.5 1.6E+02 0.0035 21.7 4.7 23 225-247 87-109 (126)
155 PRK00665 petG cytochrome b6-f 28.3 1.2E+02 0.0026 17.2 3.5 21 227-247 7-27 (37)
156 PF11669 WBP-1: WW domain-bind 28.2 1.4E+02 0.0031 21.4 4.5 11 244-254 36-46 (102)
157 PF10389 CoatB: Bacteriophage 26.6 1.4E+02 0.003 18.1 3.4 13 239-251 32-44 (46)
158 PHA03099 epidermal growth fact 26.2 1.2E+02 0.0025 22.9 3.7 33 225-257 99-131 (139)
159 smart00367 LRR_CC Leucine-rich 25.2 52 0.0011 16.7 1.3 12 167-178 2-13 (26)
160 TIGR03521 GldG gliding-associa 24.7 95 0.0021 29.6 3.9 9 25-33 250-258 (552)
161 PF01299 Lamp: Lysosome-associ 24.2 51 0.0011 28.7 1.9 15 223-237 273-287 (306)
162 PF06365 CD34_antigen: CD34/Po 23.9 1.4E+02 0.0029 24.5 4.1 19 238-256 112-130 (202)
163 KOG2952 Cell cycle control pro 23.5 1.2E+02 0.0026 26.9 3.9 32 222-253 309-340 (351)
164 PF09835 DUF2062: Uncharacteri 21.8 1.4E+02 0.0031 22.8 3.9 7 246-252 144-150 (154)
165 PF06040 Adeno_E3: Adenovirus 21.4 72 0.0016 23.3 1.8 12 242-253 114-125 (127)
166 PF14654 Epiglycanin_C: Mucin, 21.3 2.5E+02 0.0055 20.0 4.4 18 219-236 13-30 (106)
167 PF06679 DUF1180: Protein of u 21.3 1.7E+02 0.0037 23.0 4.1 6 242-247 115-120 (163)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.88 E-value=2e-22 Score=190.57 Aligned_cols=167 Identities=33% Similarity=0.528 Sum_probs=114.5
Q ss_pred CCCChhHHHHHHHHHHhCCCCCCcCCCCCCCCCCCCCCCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCE
Q 024203 20 CSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQS 99 (271)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~ 99 (271)
.+..+.|.++|..+|+.+.++.. .+|.+ ++|......|.|+.|..... . ....++.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~----------~--------~~~~v~~ 422 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDST----------K--------GKWFIDG 422 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCC----------C--------CceEEEE
Confidence 34566789999999999876542 47965 57754444599999953210 0 0012455
Q ss_pred EEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCC
Q 024203 100 LDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179 (271)
Q Consensus 100 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 179 (271)
|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|++++|+++|.+|+.++.+++|++|++++|++
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 66666666666666666677777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCChhhhccCCCCCCccCCCCcCCCCCCCCCC
Q 024203 180 SGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPL 213 (271)
Q Consensus 180 ~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~~ 213 (271)
+|.+|..+... ...+..+++.+|+.+|+.|.
T Consensus 503 ~g~iP~~l~~~---~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 503 SGRVPAALGGR---LLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cccCChHHhhc---cccCceEEecCCccccCCCC
Confidence 77777776652 22344567888988998653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=3.8e-21 Score=191.34 Aligned_cols=137 Identities=36% Similarity=0.594 Sum_probs=102.0
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
++++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 45667777777777677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
++|+++|.+|..+..+++|+++++++|++.|.+|.. +.+..+....+.||+.+|+.+
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-----~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-----GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-----chhcccChhhhcCCccccCCc
Confidence 777777777777777777777777777777777753 234556677888999999854
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=2.4e-20 Score=185.64 Aligned_cols=174 Identities=33% Similarity=0.590 Sum_probs=123.5
Q ss_pred CCCChhHHHHHHHHHHhCCCCCCcCCCCCCCCCCCCCCCCCCCCCCeeec-CCCeeEEEeeCCCCcccCCccCCCCCCCC
Q 024203 20 CSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCN-NGRIYKLSLTNLSLQGSISPYLSNCTNLQ 98 (271)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~-~~~l~~L~L~~n~l~~~~p~~l~~l~~L~ 98 (271)
+...++|.++|.+||+.+.+|...+.+|+.. .++|. |.++.|. ..+++.|++++|.+.+.++..+..+++|+
T Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~--~~~c~-----w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 24 SMLHAEELELLLSFKSSINDPLKYLSNWNSS--ADVCL-----WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQ 96 (968)
T ss_pred cCCCHHHHHHHHHHHHhCCCCcccCCCCCCC--CCCCc-----CcceecCCCCcEEEEEecCCCccccCChHHhCCCCCC
Confidence 3346688999999999998888888999753 35664 8899986 56899999999999888888888899999
Q ss_pred EEEccCCCCCCCCCCCcc-CCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCC
Q 024203 99 SLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (271)
Q Consensus 99 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (271)
.|++++|.+++.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC
Confidence 999999998888887654 677777777777777665553 23555666666666665555555555556666666666
Q ss_pred CCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 178 KLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 178 ~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
.+.+.+|..+.+ +++++.+++++|.
T Consensus 175 ~l~~~~p~~~~~----l~~L~~L~L~~n~ 199 (968)
T PLN00113 175 VLVGKIPNSLTN----LTSLEFLTLASNQ 199 (968)
T ss_pred cccccCChhhhh----CcCCCeeeccCCC
Confidence 555555555544 4444444444443
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=4.6e-15 Score=140.66 Aligned_cols=111 Identities=34% Similarity=0.515 Sum_probs=103.1
Q ss_pred CeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeecc
Q 024203 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 151 (271)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|+++|.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCchhccCC-CCCCEEEccCCCCCCC
Q 024203 152 DNLLTGQIPQQLGLL-VRLSAFDVSNNKLSGP 182 (271)
Q Consensus 152 ~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~g~ 182 (271)
+|+++|.+|..+... .++..+++.+|...+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 999999999988764 4678899999875543
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=4.9e-17 Score=125.94 Aligned_cols=137 Identities=23% Similarity=0.423 Sum_probs=110.4
Q ss_pred CCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCC-CCCchhhhc
Q 024203 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-GEIPPQLTL 141 (271)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~ 141 (271)
+|..+..+.+++.|++.+|++. .+|..++.++.|+.|+++.|++. .+|..|+.++.|+.||+.+|++. ..+|..|..
T Consensus 48 vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH
Confidence 4555667778888888888887 78888888888888888888887 77888888888888888888874 467777777
Q ss_pred CccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 142 CAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 142 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
+..|+.|+++.|.|. .+|..++++++|+.|.+..|.+- .+|.+++. +..+..+.++||..
T Consensus 126 m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~----lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD----LTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH----HHHHHHHhccccee
Confidence 888888888888888 78888888889999998888887 78888877 66677778888764
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=6.9e-17 Score=125.15 Aligned_cols=132 Identities=28% Similarity=0.468 Sum_probs=122.3
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
++++++.|.|++|.++ .+|+.+..+.+|+.|++.+|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 5788999999999999 78999999999999999999999 89999999999999999999998 899999999999999
Q ss_pred eccCCcCCC-CCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 149 DLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 149 ~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
|+.+|++.. .+|..|..+..|+.|++++|.|. .+|..+++ +.+++.+.+.+|..+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~----lt~lqil~lrdndll 163 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK----LTNLQILSLRDNDLL 163 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh----hcceeEEeeccCchh
Confidence 999999874 58999999999999999999998 88999888 788888888888754
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=1.9e-16 Score=143.58 Aligned_cols=144 Identities=25% Similarity=0.376 Sum_probs=84.5
Q ss_pred CCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCC-CCchhhhcC
Q 024203 64 PGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EIPPQLTLC 142 (271)
Q Consensus 64 ~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l 142 (271)
|+...++.+|+.|+|++|.++ .+.-..+...+|++|++|.|+++ .+|+.+.+++.|+.|++.+|+++. -+|+.++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 333344444455555555444 33333344444555555555555 555555555555555555555431 245555555
Q ss_pred ccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCCCCC
Q 024203 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPP 215 (271)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~~~~ 215 (271)
..|+.+..++|.+. ..|+.+..+..|+.|.|+.|++- .+|+.+.- ++.++.+++..||.+--+|-|.
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl----L~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL----LPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh----cCCcceeeccCCcCccCCCCcc
Confidence 55555555555555 55666666666666666666665 56666654 7888999999999988776554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.48 E-value=3.8e-15 Score=134.21 Aligned_cols=125 Identities=25% Similarity=0.252 Sum_probs=75.9
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+...-.|+|..+.++++|+|+.|+++..-...+.+++.|+.|++|+|.+...-++.+....+|++|+|++|+++..-+
T Consensus 255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 255 NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 33333345677777777778887777775555566677777777777777776666677777777777777777775555
Q ss_pred hhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCC
Q 024203 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 181 (271)
++|..++.|++|+|++|+++..-...|..+++|+.|||++|.+++
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 555555555555555555543222333444444444444444443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.44 E-value=8.1e-15 Score=132.11 Aligned_cols=146 Identities=24% Similarity=0.231 Sum_probs=110.4
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.++..-.|...+++.|+.|++++|.|+..-++.+...++|++|+|++|+++...+.+|..+..|++|+|++|.++..-.
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 33444445666678899999999999997778888889999999999999997777778888888888888888875555
Q ss_pred hhhhcCccCCeeeccCCcCCCCCch---hccCCCCCCEEEccCCCCCCCCC-hhhhccCCCCCCccCCCCcCCCC
Q 024203 137 PQLTLCAYLNVIDLHDNLLTGQIPQ---QLGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
..|..+++|+.|||++|.+++.+.+ .|.++++|+.|.+.+|++. .|| .+|.+ ++.++.+++.+|+.
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsg----l~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSG----LEALEHLDLGDNAI 428 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhcc----CcccceecCCCCcc
Confidence 6777788888888888887766543 3666777777888887777 444 33333 66667777766653
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=1.7e-13 Score=118.90 Aligned_cols=112 Identities=28% Similarity=0.357 Sum_probs=55.7
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.+|.+++++.|+|++|-+. .+|.+++.+..|+.|++++|+|. .+|..+..+..++.+-.++|++...-|+.+.+|.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 3444455555555555444 44555555555555555555554 444444444444444444455543333335555555
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
.+||+.+|.+. .+|..++++.+|++|++.+|+|+
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 55555555555 44555555555555555555554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=3.8e-14 Score=122.80 Aligned_cols=124 Identities=31% Similarity=0.488 Sum_probs=65.1
Q ss_pred CeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhh-cCccCCeeec
Q 024203 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLT-LCAYLNVIDL 150 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L 150 (271)
+++.|+...|-+. .+|+.++.+.+|..|+|..|++. .+| .|+++..|.+++++.|++. .+|..+. ++.++..||+
T Consensus 184 ~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 3334444444333 44444555555555555555554 444 4444555555555555554 4444433 5566666666
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
..|+++ +.|+.+.-+++|++||+++|.++ .+|.++++ + .+..+.+.|||
T Consensus 260 RdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn----l-hL~~L~leGNP 308 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN----L-HLKFLALEGNP 308 (565)
T ss_pred cccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc----c-eeeehhhcCCc
Confidence 666666 56666666666666666666666 45555555 3 44445555555
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.25 E-value=3e-13 Score=123.16 Aligned_cols=138 Identities=28% Similarity=0.371 Sum_probs=120.5
Q ss_pred CCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhc
Q 024203 62 YLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTL 141 (271)
Q Consensus 62 ~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 141 (271)
.+|..+-++.+|..++++.|.+. .+|+.+.++++|+.|+||+|.++ .+........+|++|++|.|+++ .+|..+..
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK 289 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK 289 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh
Confidence 46777778889999999999998 89999999999999999999998 77667778889999999999999 89999999
Q ss_pred CccCCeeeccCCcCCC-CCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 142 CAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 142 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
++.|+.|.+.+|+++- -+|..++.+.+|+.+..++|.+. .+|..+.. .+.++.+.++.|..
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR----C~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR----CVKLQKLKLDHNRL 351 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh----hHHHHHhcccccce
Confidence 9999999999998763 48999999999999999999998 88999887 45566677777754
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=5.9e-13 Score=115.19 Aligned_cols=69 Identities=22% Similarity=0.153 Sum_probs=45.3
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccC-CCCC
Q 024203 38 KDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSS-NALT 108 (271)
Q Consensus 38 ~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~ 108 (271)
..|.+.+.+-.... -.-|.+...-+++|..+++|+.|+|++|+|+..-|+.|.++.++..|-+-+ |+|+
T Consensus 60 eVP~~LP~~tveir--LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 60 EVPANLPPETVEIR--LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cCcccCCCcceEEE--eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34554444433211 134666666778888999999999999999877777777777665554443 5555
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1.1e-12 Score=118.05 Aligned_cols=133 Identities=30% Similarity=0.464 Sum_probs=96.6
Q ss_pred CCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcC
Q 024203 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (271)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (271)
+|..+|++..+++|+|+.|+++ .+|..+..++ |+.|-+++|+++ .+|+.++....|..||.+.|++. .+|..++.+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l 188 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL 188 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH
Confidence 5667777778888888888887 6777776665 778888888887 77777777777888888888877 667777777
Q ss_pred ccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
.+|+.|++..|++. .+|+.+..+ .|..||++.|+++ .||-.|.+ +..|..+.++.||
T Consensus 189 ~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~----m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRK----MRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhh----hhhheeeeeccCC
Confidence 77777777777766 556666533 4667777777776 66776666 5666666676666
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=1.9e-11 Score=97.26 Aligned_cols=126 Identities=24% Similarity=0.265 Sum_probs=49.9
Q ss_pred CCeeEEEeeCCCCcccCCccCC-CCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhh-hcCccCCee
Q 024203 71 GRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQL-TLCAYLNVI 148 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L 148 (271)
.+++.|+|++|.++ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+...+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 46799999999998 443 455 5789999999999999 454 6788999999999999999 455444 468999999
Q ss_pred eccCCcCCCCC-chhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCC
Q 024203 149 DLHDNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSF 202 (271)
Q Consensus 149 ~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~ 202 (271)
++++|+|...- -..+..+++|+.|++.+|+++. .+..-......+|+++.+|.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 99999997421 1456788999999999999973 33321111223666666653
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=3.1e-12 Score=120.83 Aligned_cols=129 Identities=35% Similarity=0.491 Sum_probs=104.0
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCC-CccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPA-DLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
...|+.|++.+|.++...-+.+-++.+|+.|+|++|++. .+|+ .+.++..|+.|+||+|+++ .+|..+..++.|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 456788888999988777677888899999999999988 4554 4678889999999999998 788888899999999
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCC-CChhhhccCCCCCCccCCCCcCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP-IPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~-ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
...+|++. ..| .+..+++|+.+|++.|+++.. +|...- .++|+.++++||.+
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-----~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-----SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-----CcccceeeccCCcc
Confidence 99999998 788 688899999999999988733 332211 25788888888885
No 17
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.7e-11 Score=103.05 Aligned_cols=130 Identities=25% Similarity=0.326 Sum_probs=105.5
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
...++.++|++|.++ .+..+..-++.++.|++|+|.+. .+. ++..+++|+.||||+|.++ .+..+-..+.+.++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 346889999999998 78888888899999999999998 443 4888999999999999998 6667777888999999
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
|+.|.+. .+ ..++.+-+|..||+++|++. .+ +.... .+++|.++.+.+.+||..
T Consensus 359 La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie-~l-deV~~-IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIE-TL-SGLRKLYSLVNLDLSSNQIE-EL-DEVNH-IGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHh-hh-hhhHhhhhheeccccccchh-hH-HHhcc-cccccHHHHHhhcCCCcc
Confidence 9999887 43 45777889999999999987 22 22222 456999999999999853
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.05 E-value=1.8e-11 Score=106.12 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=118.0
Q ss_pred CeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccc-ccCCCCCchhhhcCccCCeeec
Q 024203 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L 150 (271)
..+.|+|..|+|+...|..|+.+++|+.||||+|.|+..-|+.|.++++|..|-+-+ |+|+......|+++.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 467899999999966677899999999999999999978888999998877765555 9999666678999999999999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCCh-hhhccCCCCCCccCCCCcCCCCCCCCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA-SLGNRSGNLPKFNASSFEGNKDLYGYPLPP 215 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~-~~~~~~~~l~~l~~~~~~~N~~~c~~~~~~ 215 (271)
.-|++.-...+.|..+++|..|.+.+|.+. .++. ++.. +..++.+.+..|++.|.|.+++
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~----l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQG----LAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccc----hhccchHhhhcCccccccccch
Confidence 999999777788999999999999999998 5555 4444 6677788999999999987765
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=4.1e-10 Score=108.29 Aligned_cols=62 Identities=32% Similarity=0.559 Sum_probs=38.6
Q ss_pred cccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhh
Q 024203 119 VNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL 187 (271)
Q Consensus 119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~ 187 (271)
++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+
T Consensus 325 ~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l 386 (754)
T PRK15370 325 PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL 386 (754)
T ss_pred ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH
Confidence 45677777777776 3555443 56777777777776 5565442 46677777777666 455443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=6.3e-11 Score=103.42 Aligned_cols=141 Identities=23% Similarity=0.273 Sum_probs=95.0
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCC---CCEEEccCCCCCC----CCCCCccCC-cccceeecccccCCCC----
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTN---LQSLDLSSNALTG----SIPADLQYL-VNLAVLNLSANRLAGE---- 134 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~---- 134 (271)
+..+++++.|++++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344678888888888887555555544444 8888888888773 222334555 7888888888888743
Q ss_pred CchhhhcCccCCeeeccCCcCCCC----CchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 135 IPPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 135 ~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.-...+......+++++.+++++|+.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 233455667788888888888742 3344555678888888888887544444444344467778888887763
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=1.2e-10 Score=105.30 Aligned_cols=121 Identities=28% Similarity=0.453 Sum_probs=108.4
Q ss_pred CCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhc
Q 024203 62 YLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTL 141 (271)
Q Consensus 62 ~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 141 (271)
..|.-+|.++ |+.|.+++|.++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..
T Consensus 135 ~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~ 210 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS 210 (722)
T ss_pred cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC
Confidence 3566777765 789999999999 89999999999999999999998 88999999999999999999998 78888886
Q ss_pred CccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhc
Q 024203 142 CAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (271)
Q Consensus 142 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 189 (271)
|+ |..||++.|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+..
T Consensus 211 Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 211 LP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred Cc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 55 999999999999 99999999999999999999998 66777654
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=5.3e-10 Score=88.94 Aligned_cols=109 Identities=33% Similarity=0.469 Sum_probs=40.3
Q ss_pred CCCCCCCCEEEccCCCCCCCCCCCcc-CCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhc-cCCCC
Q 024203 91 LSNCTNLQSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQL-GLLVR 168 (271)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~ 168 (271)
+.+...+++|+|++|.++ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 344557899999999998 443 565 5789999999999998 454 5778999999999999999 565545 46899
Q ss_pred CCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 169 LSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 169 L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
|++|++++|++.. + ..+..+ ..++.|..+++.|||.
T Consensus 90 L~~L~L~~N~I~~-l-~~l~~L-~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 90 LQELYLSNNKISD-L-NELEPL-SSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --EEE-TTS---S-C-CCCGGG-GG-TT--EEE-TT-GG
T ss_pred CCEEECcCCcCCC-h-HHhHHH-HcCCCcceeeccCCcc
Confidence 9999999999974 2 223332 2488899999999984
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=5.8e-10 Score=73.22 Aligned_cols=59 Identities=36% Similarity=0.461 Sum_probs=31.6
Q ss_pred ccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCC
Q 024203 120 NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK 178 (271)
Q Consensus 120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 178 (271)
+|++|++++|+++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555553333455555555555555555554444455555555555555554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.92 E-value=1.7e-09 Score=103.82 Aligned_cols=99 Identities=31% Similarity=0.360 Sum_probs=49.1
Q ss_pred CCCEEEccCCCCCCCCCCCccC-----------------CcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCC
Q 024203 96 NLQSLDLSSNALTGSIPADLQY-----------------LVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQ 158 (271)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~~~~-----------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 158 (271)
+|+.|++++|+++ .+|..... +.+|+.|++++|+++ .+|.. .++|+.|++++|+++ .
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 5666777777666 34432111 123444455555544 23322 134455555555554 3
Q ss_pred CchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 159 IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 159 ~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
+|... .+|+.|++++|+++ .+|..+.+ ++.+..+++++|+..
T Consensus 417 IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~----L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 417 LPMLP---SGLLSLSVYRNQLT-RLPESLIH----LSSETTVNLEGNPLS 458 (788)
T ss_pred CCcch---hhhhhhhhccCccc-ccChHHhh----ccCCCeEECCCCCCC
Confidence 44321 24455555555555 45555554 556666677777654
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.91 E-value=3.4e-09 Score=102.02 Aligned_cols=102 Identities=35% Similarity=0.531 Sum_probs=73.4
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
++++.|++++|.++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 35778888888887 5665543 57888888888887 5666543 46888888888887 6676654 47888888
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCCh
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 185 (271)
++|+++ .+|..+. ++|+.|++++|+|+ .+|.
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~ 300 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA 300 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccc-cCcc
Confidence 888888 5676553 47888888888887 3454
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=7.1e-10 Score=72.77 Aligned_cols=59 Identities=41% Similarity=0.502 Sum_probs=31.1
Q ss_pred CCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCc
Q 024203 96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL 154 (271)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 154 (271)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333445555555555555555554444455555555555555554
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.90 E-value=2.5e-10 Score=108.17 Aligned_cols=108 Identities=30% Similarity=0.372 Sum_probs=93.1
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+-+..+|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. .+| .+..++.|+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence 345689999999999999444456788999999999999999 89999999999999999999998 788 788999999
Q ss_pred eeeccCCcCCCC-CchhccCCCCCCEEEccCCC
Q 024203 147 VIDLHDNLLTGQ-IPQQLGLLVRLSAFDVSNNK 178 (271)
Q Consensus 147 ~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~ 178 (271)
.+|++.|+++.. +|... ..++|++||+++|.
T Consensus 456 ~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred EEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 999999999853 34433 33899999999997
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.88 E-value=8.7e-09 Score=104.59 Aligned_cols=128 Identities=16% Similarity=0.286 Sum_probs=96.3
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
++|+.|++++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 467888888887777788888889999999998875444777765 6888899999887655455543 357888999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCC-CCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNN-KLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
++|.++ .+|..+..+++|+.|++++| ++. .+|..+.. ++.++.+++.+++.+
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~----L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISK----LKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCccccc----ccCCCeeecCCCccc
Confidence 999988 78888889999999999884 455 56665544 566666666665443
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.85 E-value=1.6e-08 Score=102.62 Aligned_cols=110 Identities=20% Similarity=0.321 Sum_probs=60.8
Q ss_pred eeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccC
Q 024203 73 IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD 152 (271)
Q Consensus 73 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 152 (271)
++.|++.++.+. .+|..+ ...+|+.|++++|.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 444444444443 344433 3455666666666655 4555555666666666665543334443 55566666666666
Q ss_pred CcCCCCCchhccCCCCCCEEEccCCCCCCCCChh
Q 024203 153 NLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS 186 (271)
Q Consensus 153 N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 186 (271)
|.....+|..+..+++|+.|++++|...+.+|..
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 5544466666666666666666665433355543
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=7.5e-10 Score=96.61 Aligned_cols=137 Identities=26% Similarity=0.320 Sum_probs=94.9
Q ss_pred CCeeEEEeeCCCCccc----CCccCCCCCCCCEEEccCCCCCCC----CCCCccCCcccceeecccccCCCC----Cchh
Q 024203 71 GRIYKLSLTNLSLQGS----ISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGE----IPPQ 138 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 138 (271)
++++.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 7889999999998842 344566678899999999998842 233345567899999999988743 2334
Q ss_pred hhcCccCCeeeccCCcCCCCCchhcc-----CCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 139 LTLCAYLNVIDLHDNLLTGQIPQQLG-----LLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 139 ~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
+..+++|++|++++|.+++.....+. ..+.|++|++++|.++..-...+......++.+..+++++|..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 55678899999999998853222221 2478999999999887322222222223356778888888864
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=6e-09 Score=100.17 Aligned_cols=108 Identities=28% Similarity=0.326 Sum_probs=85.0
Q ss_pred CeeEEEeeCCCCcccCCccCCC-----------------CCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCC
Q 024203 72 RIYKLSLTNLSLQGSISPYLSN-----------------CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~-----------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 134 (271)
+|++|++++|.+++ +|....+ ..+|+.|++++|.++ .+|.. .++|+.|++++|+++ .
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 67788888888773 4432111 136788888888888 46643 367999999999998 5
Q ss_pred CchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhc
Q 024203 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (271)
Q Consensus 135 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 189 (271)
+|... .+|+.|++++|+++ .+|..+..+++|+.+++++|+|++..|..+..
T Consensus 417 IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 417 LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 77543 46888999999999 89999999999999999999999988887754
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=7.2e-10 Score=93.43 Aligned_cols=116 Identities=23% Similarity=0.265 Sum_probs=94.2
Q ss_pred CeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCcc
Q 024203 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (271)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (271)
+...-.+.++.|++++|++. .+.. +..+++|+.||||+|.++ .+...-..+.+.++|.|+.|.+. .+ ..++.+.+
T Consensus 301 ESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYS 375 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYS 375 (490)
T ss_pred hhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhh
Confidence 33334689999999999998 4443 888999999999999998 55555567889999999999997 22 56788899
Q ss_pred CCeeeccCCcCCCCC-chhccCCCCCCEEEccCCCCCCCCChh
Q 024203 145 LNVIDLHDNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIPAS 186 (271)
Q Consensus 145 L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~ip~~ 186 (271)
|..||+++|+|...- -..+++++.|+++.+.+|++.+ +|+.
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vdY 417 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVDY 417 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cchH
Confidence 999999999998421 2468999999999999999984 5543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.1e-08 Score=92.23 Aligned_cols=107 Identities=36% Similarity=0.546 Sum_probs=86.7
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCC-CCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCT-NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
.+.++.|++.+|.+. .+++....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|...+.++.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 456888999999888 6777777774 8999999999988 77677888899999999999998 677666678889999
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
++++|++. .+|........|+.+.+++|+..
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce
Confidence 99999998 77776666667888888888533
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=1.5e-08 Score=91.44 Aligned_cols=136 Identities=33% Similarity=0.553 Sum_probs=89.7
Q ss_pred CCCeeecCC-CeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhc
Q 024203 63 LPGATCNNG-RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTL 141 (271)
Q Consensus 63 ~~~~~~~~~-~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 141 (271)
.+....... +++.|++++|.+. .+|..+..+++|+.|++++|++. .+|......+.|+.|++++|+++ .+|..+..
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~ 207 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207 (394)
T ss_pred Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh
Confidence 344444453 7889999999888 66667888888888999988888 66666557788888888888887 66665555
Q ss_pred CccCCeeeccCCcCCC----------------------CCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccC
Q 024203 142 CAYLNVIDLHDNLLTG----------------------QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNA 199 (271)
Q Consensus 142 l~~L~~L~Ls~N~l~~----------------------~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~ 199 (271)
...|+++.+++|.+.. .++..++.+++++.|++++|.++ .++. ++. +.++..
T Consensus 208 ~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~----~~~l~~ 281 (394)
T COG4886 208 LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGS----LTNLRE 281 (394)
T ss_pred hhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccc----cCccCE
Confidence 5556666666664320 22344455555666666666665 3333 332 556666
Q ss_pred CCCcCCCC
Q 024203 200 SSFEGNKD 207 (271)
Q Consensus 200 ~~~~~N~~ 207 (271)
+++++|..
T Consensus 282 L~~s~n~~ 289 (394)
T COG4886 282 LDLSGNSL 289 (394)
T ss_pred EeccCccc
Confidence 66666654
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=5.9e-10 Score=103.41 Aligned_cols=130 Identities=28% Similarity=0.334 Sum_probs=100.2
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchh-hhcCccCCeee
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAYLNVID 149 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ 149 (271)
..|.+.+.+.|++. .+...+.-++.++.|+|++|++.. .. .+..+++|++|||++|.++ .+|.- ...+ .|+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 35778888899888 677888888999999999999983 33 7888999999999999998 66643 2333 499999
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (271)
+.+|-++ .+ ..+.++++|+.||+++|-+.+-- .+.. ...+..|..+.+.|||.-|.
T Consensus 239 lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hs--eL~p-LwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 239 LRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHS--ELEP-LWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ecccHHH-hh-hhHHhhhhhhccchhHhhhhcch--hhhH-HHHHHHHHHHhhcCCccccC
Confidence 9999988 44 34788999999999999887531 1111 11245677889999997775
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.51 E-value=5.5e-09 Score=78.50 Aligned_cols=109 Identities=25% Similarity=0.396 Sum_probs=78.0
Q ss_pred eeEEEeeCCCCcccCCc---cCCCCCCCCEEEccCCCCCCCCCCCccC-CcccceeecccccCCCCCchhhhcCccCCee
Q 024203 73 IYKLSLTNLSLQGSISP---YLSNCTNLQSLDLSSNALTGSIPADLQY-LVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 73 l~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
+..++|+++.+. .+++ .+.....|+..+|++|.+. .+|+.|.. .+.++.+++++|.++ .+|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 345566666654 3333 3344556666788888887 55555544 357788888888888 678888888888888
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChh
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS 186 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~ 186 (271)
+++.|.+. ..|..+..+.++..|+..+|.+. ++|-.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 88888888 67777777888888888888877 66655
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.31 E-value=4.1e-07 Score=89.25 Aligned_cols=107 Identities=24% Similarity=0.280 Sum_probs=88.1
Q ss_pred CCeeEEEeeCCC--CcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 71 GRIYKLSLTNLS--LQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 71 ~~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
+++++|-+..|. +.......|..++.|++|||++|.--+.+|..++.+-+|++|++++..++ .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 468888888886 44333445777999999999988776799999999999999999999998 899999999999999
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNK 178 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 178 (271)
|+.++.....+|.....+.+|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 999888665667777778999999887654
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=6.4e-08 Score=72.85 Aligned_cols=112 Identities=20% Similarity=0.269 Sum_probs=88.1
Q ss_pred CCCeeEEEeeCCCCcccCCccC-CCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYL-SNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
..+++.++|++|.+. .+|+.| ..++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 457888999999999 566555 45678999999999999 88999999999999999999998 778888889999999
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCCh
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 185 (271)
+..+|.+. ++|..+..-...-..+++++.+.+.-|.
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 99999988 7775543323333344566666655443
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.8e-06 Score=52.43 Aligned_cols=36 Identities=36% Similarity=0.596 Sum_probs=19.3
Q ss_pred cCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCC
Q 024203 144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555566666666666555
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2e-06 Score=52.23 Aligned_cols=36 Identities=33% Similarity=0.655 Sum_probs=20.5
Q ss_pred ccceeecccccCCCCCchhhhcCccCCeeeccCCcCC
Q 024203 120 NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLT 156 (271)
Q Consensus 120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 156 (271)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666665 45555666666666666666665
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.13 E-value=1.9e-06 Score=84.68 Aligned_cols=126 Identities=24% Similarity=0.298 Sum_probs=97.8
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCC--CCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA--LTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
..++.+.+.+|.+. .++... ..+.|++|-+..|. +.......|..++.|+.|||++|.--+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 46778888888876 444433 23479999999996 553334457889999999999988777999999999999999
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCc
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFE 203 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~ 203 (271)
++++..+. .+|..+.+++.|.+||+..+.....+|..... +++|+.+.+.
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~----L~~Lr~L~l~ 650 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLE----LQSLRVLRLP 650 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhh----cccccEEEee
Confidence 99999999 99999999999999999998765455444433 5555555443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=9.2e-07 Score=80.42 Aligned_cols=107 Identities=32% Similarity=0.385 Sum_probs=59.8
Q ss_pred ecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCe
Q 024203 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (271)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (271)
+.+.+++.|++.+|.+. .+...+..+++|++|++++|.|+... .+..++.|+.|++++|.++ .+ ..+..+..|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhc
Confidence 34556666666666666 33333555666666666666666222 3344555666666666665 22 23344566666
Q ss_pred eeccCCcCCCCCchh-ccCCCCCCEEEccCCCCC
Q 024203 148 IDLHDNLLTGQIPQQ-LGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 148 L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 180 (271)
+++++|.+. .++.. ...+.+++.+++.+|.+.
T Consensus 167 l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 167 LDLSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 666666666 22221 345556666666666654
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.1e-06 Score=77.68 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc--hhhhcCccCCeeeccCCcCCCC-Cchh-----c
Q 024203 92 SNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP--PQLTLCAYLNVIDLHDNLLTGQ-IPQQ-----L 163 (271)
Q Consensus 92 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~ 163 (271)
..+++|+.|+|..|..-+.-.....-+..|+.|||++|++- ..+ ...+.++.|+.|+++.+.+... .|+. .
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence 34555666666665321122222233556777777777775 333 3456677777777777776632 2333 3
Q ss_pred cCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 164 GLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 164 ~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
..+++|++|++..|++. .++. +.+ ...++++..+.+.+|+.
T Consensus 298 ~~f~kL~~L~i~~N~I~-~w~s-l~~-l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIR-DWRS-LNH-LRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccceeeecccCccc-cccc-cch-hhccchhhhhhcccccc
Confidence 46678888888888876 3322 111 12244555555555553
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=9.6e-08 Score=89.11 Aligned_cols=106 Identities=26% Similarity=0.283 Sum_probs=84.0
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCC-ccCCcccceeecccccCCCCCchhhhcCccCCe
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (271)
-++.+++|||++|.++ .+. .+..++.|++|||++|.+. .+|.. ...+ .|+.|.+++|.++ .+ ..+.++.+|+.
T Consensus 185 ll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhc
Confidence 3568899999999998 444 7889999999999999998 55543 2333 4999999999998 33 46778999999
Q ss_pred eeccCCcCCCCCc-hhccCCCCCCEEEccCCCCC
Q 024203 148 IDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 148 L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~ 180 (271)
||+++|-+.+.-. ..+..+..|+.|+|.+|++.
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999885321 22456678899999999875
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.2e-06 Score=77.42 Aligned_cols=140 Identities=20% Similarity=0.233 Sum_probs=69.5
Q ss_pred eecCCCeeEEEeeCCCCccc--CCccCCCCCCCCEEEccCCCCCCCCCCCc-cCCcccceeecccccCCC----------
Q 024203 67 TCNNGRIYKLSLTNLSLQGS--ISPYLSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANRLAG---------- 133 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~---------- 133 (271)
...+++++.|||+.|-+... +-.....+++|+.|+++.|.+.-...... ..+++|+.|.++.+.++.
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 33456667777777665532 12233456666666666666552221111 123444444444444432
Q ss_pred ---------------CCchhhhcCccCCeeeccCCcCCCCCc--hhccCCCCCCEEEccCCCCCCC-CChh-hhccCCCC
Q 024203 134 ---------------EIPPQLTLCAYLNVIDLHDNLLTGQIP--QQLGLLVRLSAFDVSNNKLSGP-IPAS-LGNRSGNL 194 (271)
Q Consensus 134 ---------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~-ip~~-~~~~~~~l 194 (271)
.-......+..|+.|||++|++- ..+ ...+.++.|+.|+++.+.+... .|+. ....+..+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 11122233455666666666655 223 3345666666666666665422 1211 11123346
Q ss_pred CCccCCCCcCCCC
Q 024203 195 PKFNASSFEGNKD 207 (271)
Q Consensus 195 ~~l~~~~~~~N~~ 207 (271)
+.++.+....|+.
T Consensus 301 ~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 301 PKLEYLNISENNI 313 (505)
T ss_pred ccceeeecccCcc
Confidence 6666676666664
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=1.9e-06 Score=78.36 Aligned_cols=104 Identities=32% Similarity=0.408 Sum_probs=61.1
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
..+..+++..|.+. .+-..+..+++|+.|++..|.+. .+...+..+++|++|++++|.|+.. ..+..+..|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 44555556666655 23334556666777777777666 3333355666677777777776632 23445555667777
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
++|.++ .+. .+..+..|+.+++++|.++
T Consensus 148 ~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 148 SGNLIS-DIS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccCcch-hcc-CCccchhhhcccCCcchhh
Confidence 777666 332 2444666677777777666
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=1.8e-05 Score=63.46 Aligned_cols=104 Identities=25% Similarity=0.294 Sum_probs=63.5
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc--hhhhcCccCCee
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP--PQLTLCAYLNVI 148 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L 148 (271)
.....++|++|.+. .+ +.|..++.|.+|.+++|+|+..-|.--..+++|+.|.|.+|.+. .+- ..+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 34567777777776 22 34666777788888888877333332233466777888777775 221 234456777777
Q ss_pred eccCCcCCCCC---chhccCCCCCCEEEccCC
Q 024203 149 DLHDNLLTGQI---PQQLGLLVRLSAFDVSNN 177 (271)
Q Consensus 149 ~Ls~N~l~~~~---p~~~~~l~~L~~L~l~~N 177 (271)
.+-+|..+..- -..+..+++|+.||...=
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777766321 123556677777776553
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.67 E-value=9e-06 Score=70.14 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=83.5
Q ss_pred CCCeeEEEeeCCCCcccCCc----cCCCCCCCCEEEccCCCCCCC-------------CCCCccCCcccceeecccccCC
Q 024203 70 NGRIYKLSLTNLSLQGSISP----YLSNCTNLQSLDLSSNALTGS-------------IPADLQYLVNLAVLNLSANRLA 132 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~-------------~p~~~~~l~~L~~L~Ls~N~l~ 132 (271)
.+++++|+|++|.+...-+. .+..++.|++|+|.+|.+.-. ...-...-+.|+++..++|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 35889999999988743332 345578888999998887621 1122344567888888888876
Q ss_pred CCC----chhhhcCccCCeeeccCCcCCCC----CchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcC
Q 024203 133 GEI----PPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG 204 (271)
Q Consensus 133 ~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~ 204 (271)
..- ...+...+.|+.+.+..|.|.-. +-..+..+++|+.||+..|.|+..-...++.....++.+..++++.
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 321 12345556777777777776521 2234567777788888877776443334444333455555555544
No 49
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.55 E-value=0.00017 Score=43.39 Aligned_cols=41 Identities=34% Similarity=0.674 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhCC-CCCCcCCCCCCCCCCCCCCCCCCCCCCeeec
Q 024203 24 PNDEACLTHLSQSLK-DPYKNLQNWTKSTFSNACNGFTSYLPGATCN 69 (271)
Q Consensus 24 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~ 69 (271)
++|.++|++||+.+. +|.+.+.+|+.....++|+ |.|+.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~-----W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS-----WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC-----STTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee-----eccEEeC
Confidence 578999999999998 5778999999853247887 9999985
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=5.4e-05 Score=62.98 Aligned_cols=119 Identities=25% Similarity=0.276 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCC--CCCCCCCCCccCCcccceeecccccC
Q 024203 54 NACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN--ALTGSIPADLQYLVNLAVLNLSANRL 131 (271)
Q Consensus 54 ~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l 131 (271)
|.|-...+.+.+.+-....++.+++.+.+++. + ..+..+++|++|.++.| .+.+.++.-...+++|++|+++.|++
T Consensus 26 D~~~s~~g~~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 26 DNARSGAGKLGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred chhhhcCCCcccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 34444444566666667778888888887772 2 34667889999999999 66666665556679999999999998
Q ss_pred CCCCchhh---hcCccCCeeeccCCcCCCCC---chhccCCCCCCEEEccC
Q 024203 132 AGEIPPQL---TLCAYLNVIDLHDNLLTGQI---PQQLGLLVRLSAFDVSN 176 (271)
Q Consensus 132 ~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~l~~ 176 (271)
+. +..+ ..+.+|..|++.+|..+..- -..|.-+++|++||-..
T Consensus 104 ~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 104 KD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 72 3333 45567778888888766421 12355667777776443
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00018 Score=57.82 Aligned_cols=106 Identities=21% Similarity=0.249 Sum_probs=75.5
Q ss_pred CCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCc--hhccCCCCCCEE
Q 024203 95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIP--QQLGLLVRLSAF 172 (271)
Q Consensus 95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L 172 (271)
.....+||++|.+. .+ +.|..++.|.+|.+++|+|+..-|.--..+++|..|.+.+|+|. .+- +.+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 45678899999987 33 36788999999999999999555544445678999999999987 332 236778899999
Q ss_pred EccCCCCCCCCChhhhccCCCCCCccCCCCcC
Q 024203 173 DVSNNKLSGPIPASLGNRSGNLPKFNASSFEG 204 (271)
Q Consensus 173 ~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~ 204 (271)
.+-+|+.+. -...-.-..-.+|++..++|++
T Consensus 119 tll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 999998863 2221111222366677776654
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.21 E-value=0.0012 Score=59.45 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCC-CCCCCCCCCccCCcccceeecccc
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGSIPADLQYLVNLAVLNLSAN 129 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N 129 (271)
.+++.|++++|.+. .+|. + -.+|+.|.++++ .++ .+|..+ .++|+.|++++|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCc
Confidence 45666666666555 3441 1 124556665542 332 444333 234555555554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.00021 Score=68.82 Aligned_cols=125 Identities=20% Similarity=0.229 Sum_probs=87.2
Q ss_pred CCCeeec-CCCeeEEEeeCCCCcc-cCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCC-CCchhh
Q 024203 63 LPGATCN-NGRIYKLSLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EIPPQL 139 (271)
Q Consensus 63 ~~~~~~~-~~~l~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~ 139 (271)
|+..++. +++|++|.+.+-.+.. .......++++|..||+|+.+++ .+ ..++.+++|+.|.+.+=.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 6665554 7889999998877652 22344567899999999998888 33 577888999998887766652 111345
Q ss_pred hcCccCCeeeccCCcCCCCC--c----hhccCCCCCCEEEccCCCCCCCCChhhhc
Q 024203 140 TLCAYLNVIDLHDNLLTGQI--P----QQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (271)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~--p----~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 189 (271)
.+|++|+.||+|........ . +.-..++.|+.||.|+..+...+-+.+.+
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 67899999999987655221 1 12245789999999988877654444443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00012 Score=70.47 Aligned_cols=134 Identities=17% Similarity=0.186 Sum_probs=92.2
Q ss_pred CCeeEEEeeCCCCcc-cCCccCC-CCCCCCEEEccCCCCCCC-CCCCccCCcccceeecccccCCCCCchhhhcCccCCe
Q 024203 71 GRIYKLSLTNLSLQG-SISPYLS-NCTNLQSLDLSSNALTGS-IPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~-~~p~~l~-~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (271)
.+|++|++++..... ..|..++ .+|+|+.|.+.+-.+... .-.-..++++|..||+|+.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578899998865431 2233333 379999999998776522 222345689999999999999843 78889999999
Q ss_pred eeccCCcCCC-CCchhccCCCCCCEEEccCCCCCCC--CChhhhccCCCCCCccCCCCcCCC
Q 024203 148 IDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGP--IPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 148 L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~--ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
|.+.+=.+.. ..-..+.++++|++||+|....... +...+-.+...+|+|.-++.+|..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9887666652 1123567899999999998765422 333343445558888777777643
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00039 Score=57.96 Aligned_cols=92 Identities=23% Similarity=0.325 Sum_probs=69.1
Q ss_pred cCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccc--cCCCCCchhhhcCccCCeeeccCCcCCCCCchh-
Q 024203 86 SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN--RLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQ- 162 (271)
Q Consensus 86 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~- 162 (271)
.+......+..|+.|.+.+..++ .+ ..+..+++|+.|.++.| .+.+.++.....+++|+++++++|++.. ++.
T Consensus 34 ~~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred Ccccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 35555566777888888877776 32 35678899999999999 6666666656667999999999999883 232
Q ss_pred --ccCCCCCCEEEccCCCCCC
Q 024203 163 --LGLLVRLSAFDVSNNKLSG 181 (271)
Q Consensus 163 --~~~l~~L~~L~l~~N~l~g 181 (271)
+..+.+|..|++.+|..+.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcchhhhhcccCCccc
Confidence 4566778899999987664
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.98 E-value=0.00013 Score=63.14 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=73.9
Q ss_pred cCCCeeEEEeeCCCCcc----c---------CCccCCCCCCCCEEEccCCCCCCC----CCCCccCCcccceeecccccC
Q 024203 69 NNGRIYKLSLTNLSLQG----S---------ISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRL 131 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~----~---------~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 131 (271)
+...|++|.|.||++.. . ...-.+.-+.|+++...+|++... +...|...+.|+.+.++.|.+
T Consensus 118 s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 118 SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccc
Confidence 35667777777777641 1 222334446677777777776521 122344456667777777766
Q ss_pred CCC----CchhhhcCccCCeeeccCCcCCCC----CchhccCCCCCCEEEccCCCCCCCCChhhhc-cCCCCCCccCCCC
Q 024203 132 AGE----IPPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGN-RSGNLPKFNASSF 202 (271)
Q Consensus 132 ~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~-~~~~l~~l~~~~~ 202 (271)
.-. +-..+..+++|+.||+..|-|+-. +...+..+++|+.++++++.+...=-..+.+ +....|.++.+.+
T Consensus 198 ~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 198 RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLEL 277 (382)
T ss_pred cCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceecc
Confidence 411 123445666777777777766522 2334555666677777766665321112211 1223455555555
Q ss_pred cCCC
Q 024203 203 EGNK 206 (271)
Q Consensus 203 ~~N~ 206 (271)
.+|.
T Consensus 278 ~gNe 281 (382)
T KOG1909|consen 278 AGNE 281 (382)
T ss_pred Ccch
Confidence 5554
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.00077 Score=57.49 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=78.6
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCC-CCCCCccCCcccceeecccccCCCC---------Cchh
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-SIPADLQYLVNLAVLNLSANRLAGE---------IPPQ 138 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~---------~p~~ 138 (271)
+++++++|+++.|.++..+...-..+.+|+.|-|.+..+.- .....+..++.++.|.++.|.+... ....
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~ 174 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE 174 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh
Confidence 68999999999999885443322456788899888877653 2333456677888888888844310 0000
Q ss_pred h--------------------hcCccCCeeeccCCcCCCC-CchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCc
Q 024203 139 L--------------------TLCAYLNVIDLHDNLLTGQ-IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKF 197 (271)
Q Consensus 139 ~--------------------~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l 197 (271)
. .-++++..+.+..|.+... ....+..++.+..|+|+.|++... +++.. ...++.+
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw--asvD~-Ln~f~~l 251 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW--ASVDA-LNGFPQL 251 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccH--HHHHH-HcCCchh
Confidence 0 0123444444444443321 122345566667777777777532 11111 1226666
Q ss_pred cCCCCcCCCCC
Q 024203 198 NASSFEGNKDL 208 (271)
Q Consensus 198 ~~~~~~~N~~~ 208 (271)
..+.+..||..
T Consensus 252 ~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 252 VDLRVSENPLS 262 (418)
T ss_pred heeeccCCccc
Confidence 67777777643
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.80 E-value=0.0038 Score=56.23 Aligned_cols=95 Identities=14% Similarity=0.271 Sum_probs=55.9
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCC-CCCCCCCCCccCCcccceeecccccCC--CCCchhhhcC-----
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGSIPADLQYLVNLAVLNLSANRLA--GEIPPQLTLC----- 142 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l----- 142 (271)
.+|++|.++++.-...+|..+. .+|+.|++++| .+. .+|.. |+.|+++.|... +.+|..+..|
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc------cceEEeCCCCCcccccCcchHhheecccc
Confidence 3578888877443235565442 57888888877 444 45543 445555544421 2344443332
Q ss_pred -------------ccCCeeeccCCcCCCCCchhccCCCCCCEEEccCC
Q 024203 143 -------------AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (271)
Q Consensus 143 -------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (271)
++|++|++++|... .+|..+. .+|+.|+++.|
T Consensus 143 n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 143 NPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 36788888887765 4454333 47888888776
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00026 Score=59.79 Aligned_cols=78 Identities=28% Similarity=0.306 Sum_probs=36.6
Q ss_pred CCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCch--hhhcCccCCeeeccCCcCCCCCch-----hccC
Q 024203 93 NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAYLNVIDLHDNLLTGQIPQ-----QLGL 165 (271)
Q Consensus 93 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~-----~~~~ 165 (271)
.++.|++|.||-|.++. + ..+..++.|+.|+|..|.|. .+.+ .+.++++|+.|-|..|.-.|.-+. .+..
T Consensus 39 kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 34555555555555552 1 12344555555555555554 2221 234455555555555554444332 2334
Q ss_pred CCCCCEEE
Q 024203 166 LVRLSAFD 173 (271)
Q Consensus 166 l~~L~~L~ 173 (271)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 45555443
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.00023 Score=60.64 Aligned_cols=61 Identities=31% Similarity=0.304 Sum_probs=26.6
Q ss_pred CeeEEEeeCCCCcccCCccCCCCCCCCEEEccCC-CCCCC-CCCCccCCcccceeecccccCC
Q 024203 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGS-IPADLQYLVNLAVLNLSANRLA 132 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~ 132 (271)
+|+.|++.++++...+-..+..-.+|+.|+++.+ .++.. ..--+.+++.|+.|+++++.+.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 4444444444444433344444455555555543 22200 0011334555555555555544
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.04 E-value=0.0075 Score=51.02 Aligned_cols=107 Identities=22% Similarity=0.310 Sum_probs=59.6
Q ss_pred cCCCeeEEEeeCCCCcccCCcc----CCCCCCCCEEEccCCCCCCCCC-CCc-------------cCCcccceeeccccc
Q 024203 69 NNGRIYKLSLTNLSLQGSISPY----LSNCTNLQSLDLSSNALTGSIP-ADL-------------QYLVNLAVLNLSANR 130 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p-~~~-------------~~l~~L~~L~Ls~N~ 130 (271)
++++++.++|++|.+....|+. +..-+.|.+|.+++|.+. .+. ..+ ..-+.|+......|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4567777788887776555543 344567777777777765 221 111 123556677777776
Q ss_pred CCCCCchh-----hhcCccCCeeeccCCcCCCCCch--------hccCCCCCCEEEccCCCCC
Q 024203 131 LAGEIPPQ-----LTLCAYLNVIDLHDNLLTGQIPQ--------QLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 131 l~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~l~~N~l~ 180 (271)
+.. .|.. +..-..|+++.+..|.|. |. .+..+.+|+.||+..|.|+
T Consensus 169 len-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 169 LEN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hcc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 652 2221 111235566666666554 22 1234456667777776665
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.92 E-value=0.0031 Score=31.94 Aligned_cols=11 Identities=45% Similarity=0.561 Sum_probs=4.2
Q ss_pred CeeeccCCcCC
Q 024203 146 NVIDLHDNLLT 156 (271)
Q Consensus 146 ~~L~Ls~N~l~ 156 (271)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.88 E-value=0.028 Score=41.87 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=56.2
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+.+.++++.+.+.+ .+...-...|..+++|+.+++..+ +...-...|..+++++.+.+.+ .+.......|..+.+|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34456788888875 455444556777888999988875 5533344567777888888866 44323345666788888
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 176 (271)
.+++..+ +...-...|.+. .++.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8888765 442233445555 777777665
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.87 E-value=0.00018 Score=59.23 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=71.1
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
...+++.||++.|++. .+...+..++.+..||++.|++. ..|.++.+...++.+++..|.++ ..|.+++..+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4567888999998887 56667777888888999988888 88888888888888898888888 788888888888888
Q ss_pred eccCCcCC
Q 024203 149 DLHDNLLT 156 (271)
Q Consensus 149 ~Ls~N~l~ 156 (271)
++-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888766
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.84 E-value=0.00036 Score=57.50 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=79.1
Q ss_pred ccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCC
Q 024203 89 PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVR 168 (271)
Q Consensus 89 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 168 (271)
..+..+...+.||++.|++. .+-..|..++.+..||++.|++. ..|..++....++.+++..|..+ ..|..++..+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34666788899999999987 66778888999999999999998 78999999999999999999998 88999999999
Q ss_pred CCEEEccCCCCC
Q 024203 169 LSAFDVSNNKLS 180 (271)
Q Consensus 169 L~~L~l~~N~l~ 180 (271)
++++++-.|.|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999875
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0028 Score=32.15 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=10.1
Q ss_pred cceeecccccCCCCCchhhh
Q 024203 121 LAVLNLSANRLAGEIPPQLT 140 (271)
Q Consensus 121 L~~L~Ls~N~l~~~~p~~~~ 140 (271)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.0042 Score=53.16 Aligned_cols=87 Identities=30% Similarity=0.363 Sum_probs=59.1
Q ss_pred CCCCCEEEccCCCCCC--CCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCC-CchhccCCCCCC
Q 024203 94 CTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQ-IPQQLGLLVRLS 170 (271)
Q Consensus 94 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~ 170 (271)
.+.++.+||.+|.++. .+..-+.+++.|++|+++.|.+...+...-..+.+|++|-|.+..+... .-..+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 5778889999998873 2233356788999999999988743322112456788888877766543 233456677788
Q ss_pred EEEccCCCCC
Q 024203 171 AFDVSNNKLS 180 (271)
Q Consensus 171 ~L~l~~N~l~ 180 (271)
.|+++.|++.
T Consensus 150 elHmS~N~~r 159 (418)
T KOG2982|consen 150 ELHMSDNSLR 159 (418)
T ss_pred hhhhccchhh
Confidence 8888888543
No 68
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=95.57 E-value=0.022 Score=42.31 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=10.7
Q ss_pred CCchhhHHHHHHHHHHHHHHH
Q 024203 220 GLSVLAIVGIGLGSGFASLVI 240 (271)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~ 240 (271)
++...++++|++|++++++.+
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGI 80 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHHHHHH
Confidence 445555666666555544333
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.00028 Score=60.09 Aligned_cols=85 Identities=27% Similarity=0.377 Sum_probs=49.7
Q ss_pred CeeEEEeeCCCCcc-cCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccccc-CCC-CCchhhhcCccCCee
Q 024203 72 RIYKLSLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR-LAG-EIPPQLTLCAYLNVI 148 (271)
Q Consensus 72 ~l~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L 148 (271)
++++|||++..++. .+-..+..+..|+.|.+.++++...+...+.+-.+|+.|+++.+. ++. ...--+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666666542 122334455667777777777776666666666777777776643 220 111224566777777
Q ss_pred eccCCcCC
Q 024203 149 DLHDNLLT 156 (271)
Q Consensus 149 ~Ls~N~l~ 156 (271)
+++++.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77776554
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.00 E-value=0.077 Score=39.42 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=52.7
Q ss_pred CeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCcc
Q 024203 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (271)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (271)
..+....+++.+.+.++ +...-...+..+.+++.+.+.. .+...-...|..+++++.+++..+ +...-...+.+. .
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 34555678999999886 6644455677888899999976 444233446677899999999776 543444566676 8
Q ss_pred CCeeeccCCcCCCCCchhccCCCCC
Q 024203 145 LNVIDLHDNLLTGQIPQQLGLLVRL 169 (271)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L 169 (271)
|+.+.+.. .+...-...|.+.++|
T Consensus 105 l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 105 LKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp --EEE-TT-B-SS----GGG-----
T ss_pred ceEEEECC-CccEECCccccccccC
Confidence 88888775 4442333455555554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.85 E-value=0.04 Score=25.91 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=5.2
Q ss_pred CCCEEEccCCCCC
Q 024203 168 RLSAFDVSNNKLS 180 (271)
Q Consensus 168 ~L~~L~l~~N~l~ 180 (271)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.74 E-value=0.082 Score=44.92 Aligned_cols=114 Identities=22% Similarity=0.241 Sum_probs=75.6
Q ss_pred cCCCCCCCCEEEccCCCCCCCCCCC----ccCCcccceeecccccCCCCCc-hhhh-------------cCccCCeeecc
Q 024203 90 YLSNCTNLQSLDLSSNALTGSIPAD----LQYLVNLAVLNLSANRLAGEIP-PQLT-------------LCAYLNVIDLH 151 (271)
Q Consensus 90 ~l~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p-~~~~-------------~l~~L~~L~Ls 151 (271)
.+.++++|+..+||.|.+....|+. +..-+.|.+|.+++|.+. .+. ..++ .-+.|++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4667889999999999888766654 345678899999998875 222 1122 23678888888
Q ss_pred CCcCCCCCch-----hccCCCCCCEEEccCCCCCCCCChhhhcc----CCCCCCccCCCCcCCCCC
Q 024203 152 DNLLTGQIPQ-----QLGLLVRLSAFDVSNNKLSGPIPASLGNR----SGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 152 ~N~l~~~~p~-----~~~~l~~L~~L~l~~N~l~g~ip~~~~~~----~~~l~~l~~~~~~~N~~~ 208 (271)
.|++. .-|. .+.....|+.+.+..|.|. |..+..+ .....+++.+++++|.+.
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 88876 2222 2334467888888888765 4432221 122457788888888753
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=0.0047 Score=52.36 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=65.1
Q ss_pred CCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCc--hhccCCCCCCEE
Q 024203 95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIP--QQLGLLVRLSAF 172 (271)
Q Consensus 95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L 172 (271)
.+.++|+.=++.++. + .-...|+.|+.|.||-|.++.. ..+..++.|+.|+|..|.|. .+- ..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 344555555555552 1 1345789999999999999843 34678899999999999998 332 346789999999
Q ss_pred EccCCCCCCCCChhh
Q 024203 173 DVSNNKLSGPIPASL 187 (271)
Q Consensus 173 ~l~~N~l~g~ip~~~ 187 (271)
-|..|+-.|.-+...
T Consensus 94 WL~ENPCc~~ag~nY 108 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNY 108 (388)
T ss_pred hhccCCcccccchhH
Confidence 999999877655443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.50 E-value=0.13 Score=26.83 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=11.2
Q ss_pred CCCCEEEccCCCCCCCCChh
Q 024203 167 VRLSAFDVSNNKLSGPIPAS 186 (271)
Q Consensus 167 ~~L~~L~l~~N~l~g~ip~~ 186 (271)
++|+.|++++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 44443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.50 E-value=0.13 Score=26.83 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=11.2
Q ss_pred CCCCEEEccCCCCCCCCChh
Q 024203 167 VRLSAFDVSNNKLSGPIPAS 186 (271)
Q Consensus 167 ~~L~~L~l~~N~l~g~ip~~ 186 (271)
++|+.|++++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666666 44443
No 76
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=91.08 E-value=0.021 Score=43.70 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 024203 226 IVGIGLGSGFASLVISFTGVCIWLKVTEHKMALDQEGK 263 (271)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (271)
++++++|+++.+++++++++|++++|++|+..-+.+.+
T Consensus 51 VIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGk 88 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGK 88 (154)
T ss_pred EEEEEecccHHHHHHHHHhheeEEEecccCccccCCCc
Confidence 34444444333333334444444454444444444443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.68 E-value=0.23 Score=25.90 Aligned_cols=13 Identities=62% Similarity=0.882 Sum_probs=5.8
Q ss_pred CCCEEEccCCCCC
Q 024203 96 NLQSLDLSSNALT 108 (271)
Q Consensus 96 ~L~~L~Ls~N~l~ 108 (271)
+|+.|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.68 E-value=0.23 Score=25.90 Aligned_cols=13 Identities=62% Similarity=0.882 Sum_probs=5.8
Q ss_pred CCCEEEccCCCCC
Q 024203 96 NLQSLDLSSNALT 108 (271)
Q Consensus 96 ~L~~L~Ls~N~l~ 108 (271)
+|+.|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 79
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=90.67 E-value=0.62 Score=26.79 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024203 227 VGIGLGSGFASLVISFTGVCIWLKVTEHK 255 (271)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (271)
++++++++++++++++..+++.+++||.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 33344444444445555556666666555
No 80
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=90.56 E-value=0.29 Score=33.17 Aligned_cols=12 Identities=0% Similarity=0.141 Sum_probs=4.3
Q ss_pred HHHHHHHhhhhh
Q 024203 240 ISFTGVCIWLKV 251 (271)
Q Consensus 240 ~~~~~~~~~~~~ 251 (271)
++++++++++|+
T Consensus 16 ~v~~~~~~~rr~ 27 (75)
T PF14575_consen 16 LVIIVIVCFRRC 27 (75)
T ss_dssp HHHHHHCCCTT-
T ss_pred hheeEEEEEeeE
Confidence 333344444443
No 81
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=89.75 E-value=1.1 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=19.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 024203 219 KGLSVLAIVGIGLGSGFASLVISFTGVCIWL 249 (271)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (271)
..++...+++++++=+++.++++.+++++.+
T Consensus 29 ~~ls~g~LaGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 29 YPLSPGLLAGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456677888888777776666555544433
No 82
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=88.68 E-value=0.064 Score=38.24 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=12.8
Q ss_pred CCCCCchhhHHHHHHHHHHHH
Q 024203 217 KSKGLSVLAIVGIGLGSGFAS 237 (271)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~ 237 (271)
+.++++...|++|++++++++
T Consensus 59 ~~~~ls~gaiagi~vg~~~~v 79 (96)
T PTZ00382 59 NRSGLSTGAIAGISVAVVAVV 79 (96)
T ss_pred CCCCcccccEEEEEeehhhHH
Confidence 345666677777776655443
No 83
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=87.25 E-value=0.051 Score=31.75 Aligned_cols=9 Identities=11% Similarity=0.456 Sum_probs=3.9
Q ss_pred HHHHhhhhh
Q 024203 243 TGVCIWLKV 251 (271)
Q Consensus 243 ~~~~~~~~~ 251 (271)
+++++|+||
T Consensus 30 ~~l~~~~rR 38 (40)
T PF08693_consen 30 AFLFFWYRR 38 (40)
T ss_pred HHhheEEec
Confidence 344444444
No 84
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=86.45 E-value=1.3 Score=33.60 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=8.0
Q ss_pred HHHHHHHhhhhhcccccc
Q 024203 240 ISFTGVCIWLKVTEHKMA 257 (271)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~ 257 (271)
+++++.++|+.+|+||+.
T Consensus 43 iiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 43 IIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHhhhhHHHH
Confidence 333444444444444444
No 85
>PTZ00046 rifin; Provisional
Probab=85.12 E-value=1 Score=39.78 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhhhccc
Q 024203 234 GFASLVISFTGVCIWLKVTEH 254 (271)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~ 254 (271)
+++++++++++++.|.||+++
T Consensus 325 vVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 325 VVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHhhhcch
Confidence 333444444444444444433
No 86
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=84.53 E-value=1.1 Score=39.40 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhhhccc
Q 024203 234 GFASLVISFTGVCIWLKVTEH 254 (271)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~ 254 (271)
+++++++++++++.|.||+++
T Consensus 320 vvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 320 LIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHhhhcch
Confidence 333444444444444444433
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.76 E-value=0.19 Score=25.71 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=5.2
Q ss_pred cCCeeeccCCcCC
Q 024203 144 YLNVIDLHDNLLT 156 (271)
Q Consensus 144 ~L~~L~Ls~N~l~ 156 (271)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444455544444
No 88
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=82.17 E-value=0.43 Score=35.29 Aligned_cols=12 Identities=8% Similarity=0.473 Sum_probs=0.0
Q ss_pred HHhhhhhccccc
Q 024203 245 VCIWLKVTEHKM 256 (271)
Q Consensus 245 ~~~~~~~~~~~~ 256 (271)
+.+|+|+||+++
T Consensus 98 ~lv~rrcrrr~~ 109 (129)
T PF12191_consen 98 FLVWRRCRRREK 109 (129)
T ss_dssp ------------
T ss_pred HHHHhhhhcccc
Confidence 334444444433
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.00 E-value=0.98 Score=23.78 Aligned_cols=17 Identities=41% Similarity=0.767 Sum_probs=12.3
Q ss_pred CCCEEEccCCCCCCCCCh
Q 024203 168 RLSAFDVSNNKLSGPIPA 185 (271)
Q Consensus 168 ~L~~L~l~~N~l~g~ip~ 185 (271)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5777888888877 5564
No 90
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=81.55 E-value=0.46 Score=40.90 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhcccccc
Q 024203 239 VISFTGVCIWLKVTEHKMA 257 (271)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~ 257 (271)
++++++++++||||+.|..
T Consensus 161 IA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 161 IAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp -------------------
T ss_pred HHHHHHHHhhhhhhccccc
Confidence 3334444454544444444
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.41 E-value=3.4 Score=30.76 Aligned_cols=25 Identities=4% Similarity=-0.015 Sum_probs=14.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHH
Q 024203 218 SKGLSVLAIVGIGLGSGFASLVISF 242 (271)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (271)
...-....|+..+++++++.++++.
T Consensus 61 fs~~~i~~Ii~gv~aGvIg~Illi~ 85 (122)
T PF01102_consen 61 FSEPAIIGIIFGVMAGVIGIILLIS 85 (122)
T ss_dssp SS-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeehhHHHHHHHHHHHHHHH
Confidence 3444566677777666666666643
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=79.08 E-value=0.98 Score=49.59 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=27.3
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (271)
||++|+|+...+..|..+++|+.|+|++|++...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6889999955556788888999999999988643
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.19 E-value=2.1 Score=22.51 Aligned_cols=14 Identities=57% Similarity=0.800 Sum_probs=7.2
Q ss_pred CCCCEEEccCCCCC
Q 024203 95 TNLQSLDLSSNALT 108 (271)
Q Consensus 95 ~~L~~L~Ls~N~l~ 108 (271)
++|+.|++++|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 94
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.26 E-value=0.037 Score=51.25 Aligned_cols=136 Identities=24% Similarity=0.253 Sum_probs=78.0
Q ss_pred CeeEEEeeCCCCccc----CCccCCCCCCCCEEEccCCCCCC----CCCCCcc----CCcccceeecccccCCCCC----
Q 024203 72 RIYKLSLTNLSLQGS----ISPYLSNCTNLQSLDLSSNALTG----SIPADLQ----YLVNLAVLNLSANRLAGEI---- 135 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~----~l~~L~~L~Ls~N~l~~~~---- 135 (271)
.+++|++..+.++.. +...+.....++.++++.|.+.. .++..+. ...++++|+++++.++...
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 345556666655532 33445556677778888777631 1222233 3567788888888776211
Q ss_pred chhhhcCcc-CCeeeccCCcCCCC----CchhccCC-CCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 136 PPQLTLCAY-LNVIDLHDNLLTGQ----IPQQLGLL-VRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 136 p~~~~~l~~-L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
...+...+. +..+++.+|++.+. +...+..+ ..+++++++.|.++..-...+.+.....+.++.+.+..|+.
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 111223333 55678888877643 22334444 57788888888887665555555444445566666666653
No 95
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=76.53 E-value=0.94 Score=41.46 Aligned_cols=89 Identities=26% Similarity=0.267 Sum_probs=45.2
Q ss_pred CCCCCCCCEEEccCC-CCCCCCC----CCccCCcccceeeccccc-CCCCCchhhh-cCccCCeeeccCCc-CCCC-Cch
Q 024203 91 LSNCTNLQSLDLSSN-ALTGSIP----ADLQYLVNLAVLNLSANR-LAGEIPPQLT-LCAYLNVIDLHDNL-LTGQ-IPQ 161 (271)
Q Consensus 91 l~~l~~L~~L~Ls~N-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~-~p~ 161 (271)
....+.|+.|+++++ ......+ .....+.+|+.|++++.. ++...-..+. .+++|+.|.+.++. ++.. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345667777777652 1111111 122335667777777766 4432222222 25677777765555 4422 112
Q ss_pred hccCCCCCCEEEccCCCC
Q 024203 162 QLGLLVRLSAFDVSNNKL 179 (271)
Q Consensus 162 ~~~~l~~L~~L~l~~N~l 179 (271)
....+++|++|+++.+..
T Consensus 290 i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhcCcccEEeeecCcc
Confidence 234556677777776654
No 96
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=75.79 E-value=2.4 Score=36.96 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 024203 226 IVGIGLGSGFA 236 (271)
Q Consensus 226 ~~~~~~~~~~~ 236 (271)
++-|++|++++
T Consensus 272 ~vPIaVG~~La 282 (306)
T PF01299_consen 272 LVPIAVGAALA 282 (306)
T ss_pred hHHHHHHHHHH
Confidence 34444444433
No 97
>PHA03286 envelope glycoprotein E; Provisional
Probab=75.02 E-value=4.2 Score=36.95 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccCcCC
Q 024203 224 LAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMALDQEGKISQLM 268 (271)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (271)
..+..++++++++++++++.+..+++| ||+.+++..-+.-+++|
T Consensus 391 ~l~~s~~~~~~~~~~~~~~~~~~~~~r-~~~~r~~~~~~~~~ky~ 434 (492)
T PHA03286 391 LLVSSMAAGAILVVLLFALCIAGLYRR-RRRHRTNGYFQAYPKYM 434 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHhhh-hhhhhcccccccCcccc
Confidence 344445555555444444444444433 33333333334444544
No 98
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=74.72 E-value=2.3 Score=32.32 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=17.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 024203 219 KGLSVLAIVGIGLGSGFASLVISFTGVCI 247 (271)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (271)
..++..+|++|+++++++..+++.+++++
T Consensus 56 ~~lsgtAIaGIVfgiVfimgvva~i~icv 84 (155)
T PF10873_consen 56 DVLSGTAIAGIVFGIVFIMGVVAGIAICV 84 (155)
T ss_pred cccccceeeeeehhhHHHHHHHHHHHHHH
Confidence 34556677777777766655555555443
No 99
>PF15050 SCIMP: SCIMP protein
Probab=74.06 E-value=7 Score=28.73 Aligned_cols=6 Identities=33% Similarity=0.977 Sum_probs=2.3
Q ss_pred Hhhhhh
Q 024203 246 CIWLKV 251 (271)
Q Consensus 246 ~~~~~~ 251 (271)
+.|..|
T Consensus 31 cR~~lR 36 (133)
T PF15050_consen 31 CRWQLR 36 (133)
T ss_pred HHHHHH
Confidence 333333
No 100
>PTZ00370 STEVOR; Provisional
Probab=72.94 E-value=4.2 Score=34.74 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=7.5
Q ss_pred HHHHHHHhhhhhcccc
Q 024203 240 ISFTGVCIWLKVTEHK 255 (271)
Q Consensus 240 ~~~~~~~~~~~~~~~~ 255 (271)
++++++++|.+|||++
T Consensus 269 vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 269 VVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3334445555555443
No 101
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.72 E-value=3.4 Score=21.96 Aligned_cols=12 Identities=50% Similarity=0.684 Sum_probs=5.8
Q ss_pred cceeecccccCC
Q 024203 121 LAVLNLSANRLA 132 (271)
Q Consensus 121 L~~L~Ls~N~l~ 132 (271)
|++|||++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 444555555443
No 102
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=71.01 E-value=3.4 Score=33.61 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024203 227 VGIGLGSGFASLVISFTGVCIWLKV 251 (271)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (271)
+.+++++++++++++..+.++|.||
T Consensus 104 ~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 104 ALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred ehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 3333343333333333334444444
No 103
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.13 E-value=8 Score=33.34 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=3.7
Q ss_pred ccccCcCCC
Q 024203 261 EGKISQLMP 269 (271)
Q Consensus 261 ~~~~~~~~~ 269 (271)
|.+..+..|
T Consensus 272 ~~~~~~~vp 280 (281)
T PF12768_consen 272 EDEMMQRVP 280 (281)
T ss_pred cccccccCC
Confidence 344444443
No 104
>PHA03265 envelope glycoprotein D; Provisional
Probab=69.92 E-value=1.6 Score=38.16 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=10.0
Q ss_pred CchhHHHHHHHHHhhccCCCCCChh
Q 024203 1 MAGCTLILFFLLTCAGLPLCSSDPN 25 (271)
Q Consensus 1 ~~~~~l~l~l~l~~~~~~~~~~~~~ 25 (271)
|.+++.+.....++.....+..|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (402)
T PHA03265 8 MDGRLVFAMAIAILSVVLSCGTCEK 32 (402)
T ss_pred ccceeHHHHHHHHHHHHHhcccHHH
Confidence 3344333333333333444555543
No 105
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=69.84 E-value=5.7 Score=33.90 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=7.6
Q ss_pred HHHHHHHhhhhhcccc
Q 024203 240 ISFTGVCIWLKVTEHK 255 (271)
Q Consensus 240 ~~~~~~~~~~~~~~~~ 255 (271)
++++++++|.+|||++
T Consensus 273 vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 273 VVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3334445555555543
No 106
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=69.20 E-value=2.9 Score=37.09 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=10.2
Q ss_pred CCCchhhHHHHHHHHHHHHH
Q 024203 219 KGLSVLAIVGIGLGSGFASL 238 (271)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~ 238 (271)
..++.+.+.+++++.++-++
T Consensus 313 d~~S~lvi~i~~vgLG~P~l 332 (350)
T PF15065_consen 313 DSFSPLVIMIMAVGLGVPLL 332 (350)
T ss_pred cchhHHHHHHHHHHhhHHHH
Confidence 34556655555555444333
No 107
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=68.80 E-value=2 Score=38.92 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=16.2
Q ss_pred CCCCCchhhHHHHHHHHHHHHH
Q 024203 217 KSKGLSVLAIVGIGLGSGFASL 238 (271)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~ 238 (271)
+.++|+..+|++|.+++++|+.
T Consensus 360 n~s~LstgaIaGIsvavvvvVg 381 (397)
T PF03302_consen 360 NKSGLSTGAIAGISVAVVVVVG 381 (397)
T ss_pred ccccccccceeeeeehhHHHHH
Confidence 4567889999999887665544
No 108
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.99 E-value=5 Score=25.91 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=22.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024203 219 KGLSVLAIVGIGLGSGFASLVISFTGVCIWLKV 251 (271)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (271)
.+++...|+.++++..+++++++-++++++.++
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777777666666666666665543
No 109
>PF14851 FAM176: FAM176 family
Probab=65.78 E-value=11 Score=29.35 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 024203 225 AIVGIGLGSGFASLVISFTGVCIW 248 (271)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~ 248 (271)
.+++.++.+++++.++++++.+.+
T Consensus 24 LYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 24 LYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhee
Confidence 334444444455555555554444
No 110
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.41 E-value=0.98 Score=36.77 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=22.5
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCC
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA 106 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 106 (271)
-.++.++-++..|..+=-+.+.+++.++.|.+.++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 346777777777765444556666666666666553
No 111
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=61.53 E-value=25 Score=25.09 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=18.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 024203 220 GLSVLAIVGIGLGSGFASLVISFTGVCIW 248 (271)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (271)
+-++..++++++++++..+++++++.|-.
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~ 42 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPV 42 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44555667777777777777766665443
No 112
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=59.93 E-value=16 Score=28.72 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=4.7
Q ss_pred HHHHHHHhhhhh
Q 024203 240 ISFTGVCIWLKV 251 (271)
Q Consensus 240 ~~~~~~~~~~~~ 251 (271)
+.+++..++.||
T Consensus 110 ~yfvir~~R~r~ 121 (163)
T PF06679_consen 110 LYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHhhcc
Confidence 333344443343
No 113
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.31 E-value=14 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.021 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHHHH
Q 024203 223 VLAIVGIGLGSGFA 236 (271)
Q Consensus 223 ~~~~~~~~~~~~~~ 236 (271)
...++.++++.+++
T Consensus 20 l~l~il~~f~~G~l 33 (68)
T PF06305_consen 20 LGLLILIAFLLGAL 33 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 114
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=58.54 E-value=3.9 Score=34.91 Aligned_cols=18 Identities=22% Similarity=0.157 Sum_probs=8.4
Q ss_pred CCccCCCCCCCCEEEccC
Q 024203 87 ISPYLSNCTNLQSLDLSS 104 (271)
Q Consensus 87 ~p~~l~~l~~L~~L~Ls~ 104 (271)
+|+...-.+.-+.+.+=+
T Consensus 71 IP~gv~~~P~v~Rl~lVy 88 (278)
T PF06697_consen 71 IPPGVVVQPYVERLVLVY 88 (278)
T ss_pred cCCcceecCcceEEEEEE
Confidence 454444444455554433
No 115
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=58.28 E-value=17 Score=27.05 Aligned_cols=8 Identities=13% Similarity=0.007 Sum_probs=3.0
Q ss_pred hhHHHHHH
Q 024203 224 LAIVGIGL 231 (271)
Q Consensus 224 ~~~~~~~~ 231 (271)
+.+.+.++
T Consensus 35 WNysiL~L 42 (125)
T PF15048_consen 35 WNYSILAL 42 (125)
T ss_pred cchHHHHH
Confidence 33333333
No 116
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=57.29 E-value=10 Score=32.97 Aligned_cols=9 Identities=11% Similarity=-0.237 Sum_probs=4.0
Q ss_pred Hhhhhhccc
Q 024203 246 CIWLKVTEH 254 (271)
Q Consensus 246 ~~~~~~~~~ 254 (271)
.+||+|+.+
T Consensus 280 RYRRKKKmk 288 (299)
T PF02009_consen 280 RYRRKKKMK 288 (299)
T ss_pred HHHHHhhhh
Confidence 345544433
No 117
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=56.90 E-value=3.1 Score=38.01 Aligned_cols=111 Identities=24% Similarity=0.252 Sum_probs=66.8
Q ss_pred CCCCCEEEccCCCCCCC--CCCCccCCcccceeecccc-cCCCCCc----hhhhcCccCCeeeccCCc-CCCCCchhcc-
Q 024203 94 CTNLQSLDLSSNALTGS--IPADLQYLVNLAVLNLSAN-RLAGEIP----PQLTLCAYLNVIDLHDNL-LTGQIPQQLG- 164 (271)
Q Consensus 94 l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~- 164 (271)
.+.|+.|.+....-... +-......+.|+.|+++++ ......+ .....+++|+.+++++.. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 67788888876633222 2233456789999999873 1111111 233456889999999887 5533223332
Q ss_pred CCCCCCEEEccCCC-CCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 165 LLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 165 ~l~~L~~L~l~~N~-l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
.+++|+.|.+.++. ++ ...+.......+.++.+++.++..
T Consensus 267 ~c~~L~~L~l~~c~~lt---~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLT---DEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccc---hhHHHHHHHhcCcccEEeeecCcc
Confidence 37899999977665 44 344444444466677777775543
No 118
>PF14979 TMEM52: Transmembrane 52
Probab=55.86 E-value=53 Score=25.21 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 024203 224 LAIVGIGLGSGFASLVISFTGVCIW 248 (271)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (271)
+.|..+.+++ ++++++++.+.+++
T Consensus 20 WyIwLill~~-~llLLCG~ta~C~r 43 (154)
T PF14979_consen 20 WYIWLILLIG-FLLLLCGLTASCVR 43 (154)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4444444333 33444444444443
No 119
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=55.60 E-value=3 Score=33.61 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 024203 235 FASLVISFTGVCIWLKVT 252 (271)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~ 252 (271)
+++++++++++++|.||+
T Consensus 168 v~~~~~~~~~~~~~~R~~ 185 (189)
T PF14610_consen 168 VVVLALIMYGFFFWNRKK 185 (189)
T ss_pred HHHHHHHHHhhheeeccc
Confidence 333334444444544433
No 120
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=55.55 E-value=17 Score=31.10 Aligned_cols=32 Identities=13% Similarity=-0.073 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 024203 225 AIVGIGLGSGFASLVISFTGVCIWLKVTEHKMA 257 (271)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (271)
.|++.++.+. +++++...++.++||++..+.+
T Consensus 262 giaalvllil-~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 262 GIAALVLIIL-TVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhccccccc
Confidence 3444444443 3455667777888888877654
No 121
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.46 E-value=1.5 Score=35.66 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=42.3
Q ss_pred CCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC-chhhh-cCccCCeeeccCCc-CCCCCchhccCCCCCCEE
Q 024203 96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI-PPQLT-LCAYLNVIDLHDNL-LTGQIPQQLGLLVRLSAF 172 (271)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~-~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L 172 (271)
.++.+|.++..+..+=-+.+..++.++.|.+.++.--+.. -+.++ -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3566777766665443344555666666666655432100 00111 23567777777553 553333445566666666
Q ss_pred EccC
Q 024203 173 DVSN 176 (271)
Q Consensus 173 ~l~~ 176 (271)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6554
No 122
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=54.88 E-value=17 Score=35.73 Aligned_cols=7 Identities=43% Similarity=0.178 Sum_probs=3.4
Q ss_pred CCChhhh
Q 024203 182 PIPASLG 188 (271)
Q Consensus 182 ~ip~~~~ 188 (271)
.||.+.+
T Consensus 208 ~IPAW~F 214 (807)
T PF10577_consen 208 SIPAWRF 214 (807)
T ss_pred eeeeeEe
Confidence 4555443
No 123
>PTZ00370 STEVOR; Provisional
Probab=53.28 E-value=18 Score=31.09 Aligned_cols=33 Identities=15% Similarity=-0.063 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 024203 225 AIVGIGLGSGFASLVISFTGVCIWLKVTEHKMAL 258 (271)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (271)
.|++.++.+. ++++++..++.++||++..+.+.
T Consensus 258 giaalvllil-~vvliilYiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 258 GIAALVLLIL-AVVLIILYIWLYRRRKNSWKHEC 290 (296)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHH
Confidence 3444444433 34556677778888887776553
No 124
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=53.04 E-value=4.5 Score=31.49 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 024203 217 KSKGLSVLAIVGIGLGSGFASLVISFTGVCI 247 (271)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (271)
.+.++....+++|++++.+.+.+++.+++++
T Consensus 122 ek~GL~T~tLVGIIVGVLlaIG~igGIIivv 152 (162)
T PF05808_consen 122 EKDGLSTVTLVGIIVGVLLAIGFIGGIIIVV 152 (162)
T ss_dssp -------------------------------
T ss_pred ccCCcceeeeeeehhhHHHHHHHHhheeeEE
Confidence 3567888888888888877666665555555
No 125
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=52.06 E-value=19 Score=18.51 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhhhccc
Q 024203 237 SLVISFTGVCIWLKVTEH 254 (271)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~ 254 (271)
++.-+.-.++.|.+++|+
T Consensus 8 vla~~LP~lISWIK~kr~ 25 (26)
T PF01372_consen 8 VLATGLPTLISWIKNKRQ 25 (26)
T ss_dssp HHHTHHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHhc
Confidence 333444455667665543
No 126
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=50.74 E-value=24 Score=24.19 Aligned_cols=10 Identities=20% Similarity=-0.160 Sum_probs=3.0
Q ss_pred hHHHHHHHHH
Q 024203 225 AIVGIGLGSG 234 (271)
Q Consensus 225 ~~~~~~~~~~ 234 (271)
.+++++..++
T Consensus 5 ~i~~iialiv 14 (81)
T PF00558_consen 5 EILAIIALIV 14 (81)
T ss_dssp ---HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 127
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=50.45 E-value=8.3 Score=33.23 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=3.7
Q ss_pred CCEEEccCC
Q 024203 97 LQSLDLSSN 105 (271)
Q Consensus 97 L~~L~Ls~N 105 (271)
+...++..+
T Consensus 66 la~yd~~~~ 74 (281)
T PF12768_consen 66 LATYDFKNQ 74 (281)
T ss_pred EEEEecCCC
Confidence 334444433
No 128
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=49.91 E-value=11 Score=28.97 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024203 228 GIGLGSGFASLVISFTGVCIWLK 250 (271)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~ 250 (271)
++++...++++++++.+++.|.+
T Consensus 13 ~igi~Ll~lLl~cgiGcvwhwkh 35 (158)
T PF11770_consen 13 SIGISLLLLLLLCGIGCVWHWKH 35 (158)
T ss_pred HHHHHHHHHHHHHhcceEEEeec
Confidence 33333334444455555555544
No 129
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.84 E-value=8.4 Score=36.14 Aligned_cols=61 Identities=31% Similarity=0.325 Sum_probs=29.9
Q ss_pred CCCeeEEEeeCCCCccc--CCccCCCCCCCCEEEccCC--CCCCCCCCCccC--CcccceeecccccCC
Q 024203 70 NGRIYKLSLTNLSLQGS--ISPYLSNCTNLQSLDLSSN--ALTGSIPADLQY--LVNLAVLNLSANRLA 132 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~--l~~L~~L~Ls~N~l~ 132 (271)
.+.+..++|++|++... +..--...++|..|+|++| .+. ....+.+ ...|++|.+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 34566777777766521 1111223456666777766 222 1111111 234566666666664
No 130
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=48.84 E-value=7.7 Score=27.84 Aligned_cols=9 Identities=0% Similarity=0.006 Sum_probs=3.7
Q ss_pred hhccccccc
Q 024203 250 KVTEHKMAL 258 (271)
Q Consensus 250 ~~~~~~~~~ 258 (271)
=--|.++++
T Consensus 85 VILRer~~~ 93 (101)
T PF06024_consen 85 VILRERQKS 93 (101)
T ss_pred EEEeccccc
Confidence 344444443
No 131
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=48.46 E-value=52 Score=22.03 Aligned_cols=11 Identities=45% Similarity=0.661 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 024203 226 IVGIGLGSGFA 236 (271)
Q Consensus 226 ~~~~~~~~~~~ 236 (271)
+.+++++.+++
T Consensus 7 i~i~Gm~iVF~ 17 (79)
T PF04277_consen 7 IMIIGMGIVFL 17 (79)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 132
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=46.68 E-value=29 Score=23.39 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhhhcccccc
Q 024203 238 LVISFTGVCIWLKVTEHKMA 257 (271)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~ 257 (271)
++++.+++.....+||++..
T Consensus 11 ~~ll~~v~~~~~~~rr~~~~ 30 (75)
T PF14575_consen 11 LLLLVLVIIVIVCFRRCKYS 30 (75)
T ss_dssp HHHHHHHHHHHCCCTT----
T ss_pred HHHHHhheeEEEEEeeEcCC
Confidence 44555555555555555433
No 133
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.67 E-value=13 Score=34.97 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=31.8
Q ss_pred CcccceeecccccCCCCCch---hhhcCccCCeeeccCC--cCCCCCchhcc--CCCCCCEEEccCCCCCC
Q 024203 118 LVNLAVLNLSANRLAGEIPP---QLTLCAYLNVIDLHDN--LLTGQIPQQLG--LLVRLSAFDVSNNKLSG 181 (271)
Q Consensus 118 l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N--~l~~~~p~~~~--~l~~L~~L~l~~N~l~g 181 (271)
.+.+..++|++|++.. +.. --..-++|.+|+|++| .+... .++. +...|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred Ccceeeeecccchhhc-hhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 3456666677777652 211 1122356777777777 33311 1122 22346677777777654
No 134
>PF15050 SCIMP: SCIMP protein
Probab=44.53 E-value=35 Score=25.16 Aligned_cols=17 Identities=0% Similarity=-0.418 Sum_probs=8.6
Q ss_pred HHHHHhhhhhccccccc
Q 024203 242 FTGVCIWLKVTEHKMAL 258 (271)
Q Consensus 242 ~~~~~~~~~~~~~~~~~ 258 (271)
..++++.+|+..|+.++
T Consensus 24 glIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 24 GLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 33445555555555443
No 135
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=42.96 E-value=40 Score=26.69 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024203 224 LAIVGIGLGSGFASLVISFTGVCIWLKVTEHK 255 (271)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (271)
..|.+|+ +++++.++.++.-+|-|.|||-..
T Consensus 115 g~IaGIv-sav~valvGAvsSyiaYqkKKlCF 145 (169)
T PF12301_consen 115 GTIAGIV-SAVVVALVGAVSSYIAYQKKKLCF 145 (169)
T ss_pred chhhhHH-HHHHHHHHHHHHHHHHHHhhccce
Confidence 3344443 333333444444455555655544
No 136
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=42.84 E-value=39 Score=24.76 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 024203 228 GIGLGSGF 235 (271)
Q Consensus 228 ~~~~~~~~ 235 (271)
..++|+.+
T Consensus 87 p~VIGGLc 94 (126)
T PF03229_consen 87 PLVIGGLC 94 (126)
T ss_pred hhhhhHHH
Confidence 44444433
No 137
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.96 E-value=19 Score=40.32 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=27.9
Q ss_pred ecccccCCCCCchhhhcCccCCeeeccCCcCC
Q 024203 125 NLSANRLAGEIPPQLTLCAYLNVIDLHDNLLT 156 (271)
Q Consensus 125 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 156 (271)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999666678888999999999999775
No 138
>PTZ00046 rifin; Provisional
Probab=41.61 E-value=29 Score=30.92 Aligned_cols=32 Identities=6% Similarity=-0.028 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 024203 229 IGLGSGFASLVISFTGVCIWLKVTEHKMALDQ 260 (271)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (271)
|+..++++++++++.++++-.-|.||+++...
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 34445555666666666777788888887644
No 139
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=41.35 E-value=29 Score=30.79 Aligned_cols=32 Identities=6% Similarity=-0.041 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 024203 229 IGLGSGFASLVISFTGVCIWLKVTEHKMALDQ 260 (271)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (271)
|+..++++++++++.++++-.-|.||+++...
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 44445555666666666777778888877644
No 140
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=40.56 E-value=45 Score=20.59 Aligned_cols=12 Identities=33% Similarity=0.312 Sum_probs=5.0
Q ss_pred hhhccccccccc
Q 024203 249 LKVTEHKMALDQ 260 (271)
Q Consensus 249 ~~~~~~~~~~~~ 260 (271)
.|++..|.+.+.
T Consensus 24 ~K~ygYkht~d~ 35 (50)
T PF12606_consen 24 LKAYGYKHTVDP 35 (50)
T ss_pred hhccccccccCC
Confidence 344444444333
No 141
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=39.99 E-value=1.3 Score=41.24 Aligned_cols=112 Identities=29% Similarity=0.340 Sum_probs=74.8
Q ss_pred CCCeeEEEeeCCCCcc----cCCccCC----CCCCCCEEEccCCCCCCCC----CCCccCCcc-cceeecccccCCCC--
Q 024203 70 NGRIYKLSLTNLSLQG----SISPYLS----NCTNLQSLDLSSNALTGSI----PADLQYLVN-LAVLNLSANRLAGE-- 134 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~-L~~L~Ls~N~l~~~-- 134 (271)
...++.++++.|.+.. .++..+. ...++++|.++++.++... ...+...++ +..+++..|.+...
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 4577888888888741 1233333 4678999999999877211 112333444 67799999988743
Q ss_pred --CchhhhcC-ccCCeeeccCCcCCCC----CchhccCCCCCCEEEccCCCCCC
Q 024203 135 --IPPQLTLC-AYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSG 181 (271)
Q Consensus 135 --~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g 181 (271)
....+..+ ..++.++++.|.|+.. +...+...+.++.+.++.|.+..
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22234444 5778999999999854 34455667789999999998763
No 142
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=39.37 E-value=28 Score=33.36 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=6.6
Q ss_pred ccCCCCCCEEEccC
Q 024203 163 LGLLVRLSAFDVSN 176 (271)
Q Consensus 163 ~~~l~~L~~L~l~~ 176 (271)
|..+++++...+.-
T Consensus 268 F~~~rnfs~~~vht 281 (807)
T KOG1094|consen 268 FDELRNFSAMQVHT 281 (807)
T ss_pred hhhhcccceeEEec
Confidence 34445555544443
No 143
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=38.77 E-value=62 Score=24.87 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=5.1
Q ss_pred hHHHHHHHHHH
Q 024203 225 AIVGIGLGSGF 235 (271)
Q Consensus 225 ~~~~~~~~~~~ 235 (271)
.+.++.+.+++
T Consensus 121 lilaisvtvv~ 131 (154)
T PF14914_consen 121 LILAISVTVVV 131 (154)
T ss_pred hHHHHHHHHHH
Confidence 44455444443
No 144
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=38.04 E-value=60 Score=24.84 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhhhccccc
Q 024203 235 FASLVISFTGVCIWLKVTEHKM 256 (271)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~ 256 (271)
.++++++.+++|..|||++-..
T Consensus 41 liiiiivli~lcssRKkKaaAA 62 (189)
T PF05568_consen 41 LIIIIIVLIYLCSSRKKKAAAA 62 (189)
T ss_pred HHHHHHHHHHHHhhhhHHHHhh
Confidence 3444555667777777766433
No 145
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=37.60 E-value=11 Score=34.72 Aligned_cols=12 Identities=0% Similarity=-0.191 Sum_probs=0.0
Q ss_pred HHHhhhhhcccc
Q 024203 244 GVCIWLKVTEHK 255 (271)
Q Consensus 244 ~~~~~~~~~~~~ 255 (271)
++++.+.+++++
T Consensus 370 viv~vc~~~rrr 381 (439)
T PF02480_consen 370 VIVWVCLRCRRR 381 (439)
T ss_dssp ------------
T ss_pred HHhheeeeehhc
Confidence 334444443333
No 146
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=37.22 E-value=82 Score=17.97 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024203 226 IVGIGLGSGFASLVISFTGVCI 247 (271)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~ 247 (271)
..+++++.+.+.++..++..+.
T Consensus 6 L~GiVlGli~vtl~Glfv~Ay~ 27 (37)
T PF02529_consen 6 LSGIVLGLIPVTLAGLFVAAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHHHHHHHHHHHHH
Confidence 3455555544444333333333
No 147
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=36.17 E-value=41 Score=32.29 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=10.5
Q ss_pred CCCCCchhhHHHHHHHHHHHHH
Q 024203 217 KSKGLSVLAIVGIGLGSGFASL 238 (271)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~ 238 (271)
+...-+.|.|+++++.++++++
T Consensus 263 ~s~~~NlWII~gVlvPv~vV~~ 284 (684)
T PF12877_consen 263 KSPPNNLWIIAGVLVPVLVVLL 284 (684)
T ss_pred CCCCCCeEEEehHhHHHHHHHH
Confidence 3344455655665444443333
No 148
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=34.00 E-value=88 Score=21.77 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=4.8
Q ss_pred CCchhhHHHHH
Q 024203 220 GLSVLAIVGIG 230 (271)
Q Consensus 220 ~~~~~~~~~~~ 230 (271)
++.+..+.+.+
T Consensus 68 gl~VgTlFgLi 78 (100)
T PF10954_consen 68 GLGVGTLFGLI 78 (100)
T ss_pred eehhHHHHHHH
Confidence 34444444443
No 149
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=31.14 E-value=44 Score=30.49 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhhcccccccccc
Q 024203 240 ISFTGVCIWLKVTEHKMALDQE 261 (271)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~ 261 (271)
++++.+..|+.||..++++.||
T Consensus 576 l~ii~~Lh~~EKkeD~~Er~Qe 597 (606)
T KOG4550|consen 576 LAIIGILHWQEKKEDDRERRQE 597 (606)
T ss_pred HHHHhheehhhhhhhhHHHHhh
Confidence 3334445555555444444444
No 150
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=30.45 E-value=29 Score=30.25 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=4.2
Q ss_pred CCChhHHHH
Q 024203 21 SSDPNDEAC 29 (271)
Q Consensus 21 ~~~~~~~~~ 29 (271)
+.|+....|
T Consensus 40 ~~CP~slDC 48 (341)
T PF06809_consen 40 AKCPGSLDC 48 (341)
T ss_pred cCCCchhhh
Confidence 445444444
No 151
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=29.74 E-value=29 Score=31.13 Aligned_cols=9 Identities=0% Similarity=-0.193 Sum_probs=3.5
Q ss_pred HHHHhhhhh
Q 024203 243 TGVCIWLKV 251 (271)
Q Consensus 243 ~~~~~~~~~ 251 (271)
+++++++||
T Consensus 317 ~~~~~~~~~ 325 (361)
T PF12259_consen 317 AWLYRTFRR 325 (361)
T ss_pred HhheeehHH
Confidence 333333333
No 152
>PF15431 TMEM190: Transmembrane protein 190
Probab=29.54 E-value=86 Score=22.78 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=17.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024203 220 GLSVLAIVGIGLGSGFASLVISFTGVCIWLKVT 252 (271)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (271)
........+.+..++-+++++..+.+|.|-|||
T Consensus 55 nmrrKHmWaL~wtC~gll~Li~~iclFWWAkRr 87 (134)
T PF15431_consen 55 NMRRKHMWALGWTCGGLLLLICSICLFWWAKRR 87 (134)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 344455566666555444444445555555543
No 153
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=29.53 E-value=1.1e+02 Score=17.31 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024203 227 VGIGLGSGFASLVISFTGVCI 247 (271)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~ 247 (271)
.+++++.+.+.++..++..+.
T Consensus 7 ~GiVLGlipvTl~GlfvaAyl 27 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYL 27 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHH
Confidence 445555444443333333333
No 154
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=28.52 E-value=1.6e+02 Score=21.66 Aligned_cols=23 Identities=13% Similarity=-0.204 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 024203 225 AIVGIGLGSGFASLVISFTGVCI 247 (271)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~ 247 (271)
-.++.++...++.++.+...+-.
T Consensus 87 p~VIGGLcaL~LaamGA~~LLrR 109 (126)
T PF03229_consen 87 PLVIGGLCALTLAAMGAGALLRR 109 (126)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444343333333
No 155
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=28.27 E-value=1.2e+02 Score=17.20 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024203 227 VGIGLGSGFASLVISFTGVCI 247 (271)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~ 247 (271)
.+++++.+.+.++..++..+.
T Consensus 7 ~GiVLGlipiTl~GlfvaAyl 27 (37)
T PRK00665 7 CGIVLGLIPVTLAGLFVAAWN 27 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHH
Confidence 445555444443333333333
No 156
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=28.22 E-value=1.4e+02 Score=21.35 Aligned_cols=11 Identities=9% Similarity=0.150 Sum_probs=5.7
Q ss_pred HHHhhhhhccc
Q 024203 244 GVCIWLKVTEH 254 (271)
Q Consensus 244 ~~~~~~~~~~~ 254 (271)
.+..++++|+|
T Consensus 36 c~c~~~~~r~r 46 (102)
T PF11669_consen 36 CCCACRHRRRR 46 (102)
T ss_pred HHHHHHHHHHH
Confidence 44445565554
No 157
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=26.57 E-value=1.4e+02 Score=18.12 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=6.1
Q ss_pred HHHHHHHHhhhhh
Q 024203 239 VISFTGVCIWLKV 251 (271)
Q Consensus 239 ~~~~~~~~~~~~~ 251 (271)
+++.+..|-|.||
T Consensus 32 v~V~i~v~kwiRr 44 (46)
T PF10389_consen 32 VIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3334445555554
No 158
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=26.22 E-value=1.2e+02 Score=22.87 Aligned_cols=33 Identities=6% Similarity=-0.219 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 024203 225 AIVGIGLGSGFASLVISFTGVCIWLKVTEHKMA 257 (271)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (271)
..+++.+..+++++++...+.++..|..||++-
T Consensus 99 ~Yia~~~il~il~~i~is~~~~~~yr~~r~~~~ 131 (139)
T PHA03099 99 SYIPSPGIVLVLVGIIITCCLLSVYRFTRRTKL 131 (139)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhheeeecccC
Confidence 344433333344444545556666676655543
No 159
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.19 E-value=52 Score=16.70 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=8.5
Q ss_pred CCCCEEEccCCC
Q 024203 167 VRLSAFDVSNNK 178 (271)
Q Consensus 167 ~~L~~L~l~~N~ 178 (271)
++|++|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777764
No 160
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=24.69 E-value=95 Score=29.57 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=3.9
Q ss_pred hHHHHHHHH
Q 024203 25 NDEACLTHL 33 (271)
Q Consensus 25 ~~~~~l~~~ 33 (271)
.+..++.+|
T Consensus 250 ~e~~~Ldqf 258 (552)
T TIGR03521 250 REKYILDQY 258 (552)
T ss_pred HHHHHHHHH
Confidence 344444444
No 161
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=24.18 E-value=51 Score=28.68 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHH
Q 024203 223 VLAIVGIGLGSGFAS 237 (271)
Q Consensus 223 ~~~~~~~~~~~~~~~ 237 (271)
+-.++++++++.+++
T Consensus 273 vPIaVG~~La~lvli 287 (306)
T PF01299_consen 273 VPIAVGAALAGLVLI 287 (306)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555555443
No 162
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=23.85 E-value=1.4e+02 Score=24.47 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhhhccccc
Q 024203 238 LVISFTGVCIWLKVTEHKM 256 (271)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ 256 (271)
++++++....|+...|+..
T Consensus 112 lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred HHHHHHHHHHHHhhhhccC
Confidence 4444444444555544443
No 163
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=23.46 E-value=1.2e+02 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024203 222 SVLAIVGIGLGSGFASLVISFTGVCIWLKVTE 253 (271)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (271)
..+.|+.+++|++++++.+++.++++++.|+.
T Consensus 309 ~FLgI~YLvVG~ic~~l~~~f~~~~l~~~r~~ 340 (351)
T KOG2952|consen 309 PFLGIAYLVVGSICILLGLIFLVIYLFKPRRL 340 (351)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45567777777766655555555555444333
No 164
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=21.84 E-value=1.4e+02 Score=22.75 Aligned_cols=7 Identities=14% Similarity=-0.064 Sum_probs=2.6
Q ss_pred Hhhhhhc
Q 024203 246 CIWLKVT 252 (271)
Q Consensus 246 ~~~~~~~ 252 (271)
-.++|||
T Consensus 144 ~~~r~~r 150 (154)
T PF09835_consen 144 RKYRKRR 150 (154)
T ss_pred HHHHHHH
Confidence 3333333
No 165
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=21.37 E-value=72 Score=23.32 Aligned_cols=12 Identities=17% Similarity=0.327 Sum_probs=6.2
Q ss_pred HHHHHhhhhhcc
Q 024203 242 FTGVCIWLKVTE 253 (271)
Q Consensus 242 ~~~~~~~~~~~~ 253 (271)
+.++++|.|+..
T Consensus 114 l~v~~cW~k~wG 125 (127)
T PF06040_consen 114 LVVLICWFKKWG 125 (127)
T ss_pred hhhheeeeeccc
Confidence 334556666543
No 166
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=21.34 E-value=2.5e+02 Score=19.97 Aligned_cols=18 Identities=28% Similarity=0.134 Sum_probs=11.3
Q ss_pred CCCchhhHHHHHHHHHHH
Q 024203 219 KGLSVLAIVGIGLGSGFA 236 (271)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~ 236 (271)
..+..+.|+.|.++.+++
T Consensus 13 GsL~PWeIfLItLasVvv 30 (106)
T PF14654_consen 13 GSLKPWEIFLITLASVVV 30 (106)
T ss_pred CCccchHHHHHHHHHHHH
Confidence 456677777777655443
No 167
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.28 E-value=1.7e+02 Score=22.99 Aligned_cols=6 Identities=17% Similarity=-0.651 Sum_probs=2.2
Q ss_pred HHHHHh
Q 024203 242 FTGVCI 247 (271)
Q Consensus 242 ~~~~~~ 247 (271)
=++...
T Consensus 115 r~~R~r 120 (163)
T PF06679_consen 115 RTFRLR 120 (163)
T ss_pred HHHhhc
Confidence 333333
Done!