Query 024203
Match_columns 271
No_of_seqs 348 out of 4123
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-24 3.8E-29 189.0 14.2 176 21-206 2-185 (313)
2 3rgz_A Protein brassinosteroid 99.9 1.3E-22 4.5E-27 195.8 10.3 120 95-219 632-751 (768)
3 4ecn_A Leucine-rich repeat pro 99.8 7.9E-22 2.7E-26 191.7 8.3 180 19-208 263-561 (876)
4 4eco_A Uncharacterized protein 99.8 1.9E-21 6.6E-26 184.0 9.0 180 21-208 26-318 (636)
5 2v9t_B SLIT homolog 2 protein 99.8 1.2E-20 4.2E-25 155.5 11.7 138 71-212 32-169 (220)
6 3m19_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 155.1 14.9 151 56-210 44-194 (251)
7 3rgz_A Protein brassinosteroid 99.8 4.6E-21 1.6E-25 185.0 10.0 161 17-186 4-170 (768)
8 1ogq_A PGIP-2, polygalacturona 99.8 1.8E-21 6.1E-26 168.8 5.8 152 59-216 137-312 (313)
9 3e6j_A Variable lymphocyte rec 99.8 7.1E-20 2.4E-24 151.8 14.1 137 71-212 40-176 (229)
10 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-20 9.9E-25 153.3 11.0 138 71-212 32-170 (220)
11 2o6q_A Variable lymphocyte rec 99.8 3.1E-19 1.1E-23 151.4 15.3 140 68-211 82-221 (270)
12 3rfs_A Internalin B, repeat mo 99.8 2.6E-19 9E-24 152.0 14.3 143 66-212 80-222 (272)
13 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.3E-25 163.5 6.8 179 18-210 20-244 (328)
14 2o6s_A Variable lymphocyte rec 99.8 8E-19 2.7E-23 143.0 14.5 139 70-212 27-165 (208)
15 1w8a_A SLIT protein; signaling 99.8 2.8E-19 9.5E-24 144.3 11.1 132 74-212 11-143 (192)
16 1ozn_A Reticulon 4 receptor; N 99.8 3.1E-19 1.1E-23 152.3 11.7 142 66-211 100-241 (285)
17 1p9a_G Platelet glycoprotein I 99.8 1.1E-18 3.6E-23 149.8 14.2 138 69-212 75-212 (290)
18 4fcg_A Uncharacterized protein 99.8 1.1E-18 3.6E-23 152.4 12.6 142 57-206 114-264 (328)
19 2wfh_A SLIT homolog 2 protein 99.8 1E-18 3.5E-23 141.2 11.5 131 74-212 13-143 (193)
20 2xot_A Amphoterin-induced prot 99.8 9.9E-19 3.4E-23 154.4 9.7 152 57-212 49-206 (361)
21 3v47_A TOLL-like receptor 5B a 99.8 2.3E-18 8E-23 156.0 12.3 139 70-212 274-412 (455)
22 2z66_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 150.4 8.6 141 67-211 122-264 (306)
23 3m19_A Variable lymphocyte rec 99.8 1.4E-17 4.9E-22 139.6 14.9 134 71-208 35-168 (251)
24 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-18 4.4E-23 163.2 9.0 144 65-213 418-563 (606)
25 2o6q_A Variable lymphocyte rec 99.7 4.3E-17 1.5E-21 138.1 16.3 148 57-208 47-194 (270)
26 4g8a_A TOLL-like receptor 4; l 99.7 3E-18 1E-22 160.7 9.7 145 65-212 439-584 (635)
27 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-17 5.9E-22 141.5 13.0 114 67-180 52-166 (285)
28 4eco_A Uncharacterized protein 99.7 1.7E-18 5.7E-23 163.9 6.7 132 55-189 191-351 (636)
29 3zyj_A Leucine-rich repeat-con 99.7 1.2E-17 4.1E-22 151.1 11.5 151 57-213 122-297 (440)
30 1w8a_A SLIT protein; signaling 99.7 3.9E-17 1.3E-21 131.6 13.3 114 72-185 30-144 (192)
31 2o6r_A Variable lymphocyte rec 99.7 3.4E-17 1.2E-21 130.0 12.6 131 74-211 10-140 (177)
32 2z62_A TOLL-like receptor 4, v 99.7 1.6E-17 5.5E-22 141.0 10.9 150 59-212 64-241 (276)
33 2ell_A Acidic leucine-rich nuc 99.7 2.1E-17 7.1E-22 130.1 10.7 131 71-207 24-159 (168)
34 2je0_A Acidic leucine-rich nuc 99.7 1.7E-17 5.7E-22 128.0 9.8 127 71-203 17-148 (149)
35 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-17 7.6E-22 135.9 11.2 128 57-184 42-170 (220)
36 3zyi_A Leucine-rich repeat-con 99.7 2.5E-17 8.6E-22 149.5 11.9 151 57-213 133-308 (452)
37 3rfs_A Internalin B, repeat mo 99.7 1.1E-16 3.6E-21 135.9 14.5 136 67-208 59-194 (272)
38 3t6q_A CD180 antigen; protein- 99.7 1.2E-17 4E-22 156.7 9.3 139 69-212 423-564 (606)
39 2v9t_B SLIT homolog 2 protein 99.7 4.9E-17 1.7E-21 133.9 11.8 127 56-182 41-167 (220)
40 4g8a_A TOLL-like receptor 4; l 99.7 3.7E-17 1.3E-21 153.3 12.3 133 71-207 52-185 (635)
41 1p9a_G Platelet glycoprotein I 99.7 6.4E-17 2.2E-21 138.7 12.3 145 57-208 41-185 (290)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3E-17 1E-21 152.9 10.9 148 57-212 363-514 (562)
43 1ziw_A TOLL-like receptor 3; i 99.7 5.3E-17 1.8E-21 154.2 12.4 147 63-213 472-627 (680)
44 2z63_A TOLL-like receptor 4, v 99.7 2.4E-17 8.2E-22 153.2 9.7 143 67-213 392-536 (570)
45 2z7x_B TOLL-like receptor 1, v 99.7 2.4E-17 8.2E-22 151.9 9.0 145 59-211 336-484 (520)
46 3e6j_A Variable lymphocyte rec 99.7 1.9E-16 6.6E-21 131.0 13.4 127 57-184 50-176 (229)
47 2o6s_A Variable lymphocyte rec 99.7 2.3E-16 7.7E-21 128.4 13.6 128 57-184 38-165 (208)
48 3vq2_A TLR4, TOLL-like recepto 99.7 9.5E-17 3.2E-21 150.5 11.6 151 56-207 41-193 (606)
49 2xot_A Amphoterin-induced prot 99.7 1.2E-16 4.2E-21 141.0 11.6 137 71-208 39-176 (361)
50 4ecn_A Leucine-rich repeat pro 99.7 2.6E-17 8.8E-22 160.1 7.6 144 56-207 434-607 (876)
51 2z62_A TOLL-like receptor 4, v 99.7 1.9E-16 6.5E-21 134.3 12.1 150 57-207 38-189 (276)
52 2z66_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 137.8 9.8 141 65-209 95-237 (306)
53 2id5_A Lingo-1, leucine rich r 99.7 1.6E-16 5.6E-21 144.8 11.2 133 57-189 42-174 (477)
54 2id5_A Lingo-1, leucine rich r 99.7 7E-17 2.4E-21 147.3 8.7 142 67-212 172-337 (477)
55 4ezg_A Putative uncharacterize 99.7 2.6E-16 9E-21 127.1 10.7 130 67-206 62-192 (197)
56 3zyi_A Leucine-rich repeat-con 99.7 8.3E-17 2.8E-21 146.1 8.1 77 57-133 85-161 (452)
57 2o6r_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 122.9 11.7 114 71-184 28-141 (177)
58 2z80_A TOLL-like receptor 2, v 99.7 1.1E-17 3.8E-22 147.0 1.9 121 67-188 72-195 (353)
59 3zyj_A Leucine-rich repeat-con 99.7 7E-17 2.4E-21 146.1 7.1 145 57-207 74-243 (440)
60 2wfh_A SLIT homolog 2 protein 99.7 5.1E-16 1.8E-20 125.2 11.3 111 71-182 31-141 (193)
61 2z81_A CD282 antigen, TOLL-lik 99.7 3.2E-16 1.1E-20 145.2 10.5 133 71-207 26-160 (549)
62 3t6q_A CD180 antigen; protein- 99.6 3.6E-16 1.2E-20 146.5 10.8 148 56-207 42-191 (606)
63 1a9n_A U2A', U2A'; complex (nu 99.6 6E-16 2.1E-20 122.7 10.1 131 66-206 14-151 (176)
64 3v47_A TOLL-like receptor 5B a 99.6 4E-16 1.4E-20 141.2 10.0 127 58-184 286-412 (455)
65 3oja_B Anopheles plasmodium-re 99.6 6E-16 2E-20 145.3 10.8 113 69-181 73-185 (597)
66 3g39_A Variable lymphocyte rec 99.6 1.8E-15 6.2E-20 119.5 11.8 108 74-184 12-119 (170)
67 2ell_A Acidic leucine-rich nuc 99.6 6.7E-16 2.3E-20 121.3 9.2 123 61-186 39-165 (168)
68 2z63_A TOLL-like receptor 4, v 99.6 6.6E-16 2.3E-20 143.5 10.6 133 57-189 38-171 (570)
69 1wwl_A Monocyte differentiatio 99.6 1.9E-16 6.6E-21 136.9 6.4 88 68-156 118-214 (312)
70 3j0a_A TOLL-like receptor 5; m 99.6 1.4E-15 4.6E-20 148.3 12.9 149 57-207 34-186 (844)
71 3g39_A Variable lymphocyte rec 99.6 1.6E-15 5.5E-20 119.8 11.0 109 96-211 10-118 (170)
72 1wwl_A Monocyte differentiatio 99.6 2.4E-16 8.1E-21 136.3 6.5 137 69-209 93-242 (312)
73 1xku_A Decorin; proteoglycan, 99.6 2.4E-15 8.4E-20 130.7 12.6 114 67-181 141-277 (330)
74 4ezg_A Putative uncharacterize 99.6 6.4E-16 2.2E-20 124.8 8.3 130 68-207 41-171 (197)
75 1ziw_A TOLL-like receptor 3; i 99.6 1.1E-15 3.6E-20 145.3 11.0 149 57-207 35-183 (680)
76 2z81_A CD282 antigen, TOLL-lik 99.6 2.2E-16 7.6E-21 146.2 6.1 151 57-207 36-208 (549)
77 3oja_B Anopheles plasmodium-re 99.6 2.8E-15 9.7E-20 140.7 13.7 92 65-156 93-184 (597)
78 1xku_A Decorin; proteoglycan, 99.6 1.6E-15 5.6E-20 131.8 11.0 132 71-207 121-275 (330)
79 3o6n_A APL1; leucine-rich repe 99.6 1.2E-15 4.1E-20 135.7 10.2 115 67-181 65-179 (390)
80 2r9u_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 117.4 12.6 106 74-182 15-120 (174)
81 4b8c_D Glucose-repressible alc 99.6 5E-16 1.7E-20 148.9 7.8 123 63-189 216-338 (727)
82 3j0a_A TOLL-like receptor 5; m 99.6 2E-15 6.9E-20 147.0 12.0 136 69-208 22-161 (844)
83 3o6n_A APL1; leucine-rich repe 99.6 4.9E-15 1.7E-19 131.7 13.4 91 66-156 88-178 (390)
84 3oja_A Leucine-rich immune mol 99.6 2.9E-16 9.8E-21 144.1 5.0 133 70-210 119-252 (487)
85 2xwt_C Thyrotropin receptor; s 99.6 8E-16 2.7E-20 127.8 7.2 112 67-180 51-169 (239)
86 2ft3_A Biglycan; proteoglycan, 99.6 4.7E-15 1.6E-19 129.1 12.0 112 96-208 194-307 (332)
87 2r9u_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 117.4 10.9 107 98-211 15-121 (174)
88 2z80_A TOLL-like receptor 2, v 99.6 2.3E-15 7.8E-20 132.2 9.8 132 71-207 52-186 (353)
89 2xwt_C Thyrotropin receptor; s 99.6 2.5E-15 8.6E-20 124.8 9.4 132 71-208 31-169 (239)
90 1dce_A Protein (RAB geranylger 99.6 1.3E-15 4.5E-20 142.1 8.3 108 72-184 442-550 (567)
91 4glp_A Monocyte differentiatio 99.6 1.1E-15 3.9E-20 131.9 6.7 132 69-208 143-285 (310)
92 3o53_A Protein LRIM1, AGAP0063 99.6 8.4E-16 2.9E-20 133.2 5.8 106 94-206 119-225 (317)
93 2ft3_A Biglycan; proteoglycan, 99.6 1.1E-14 3.8E-19 126.7 12.5 105 72-179 55-159 (332)
94 2z7x_B TOLL-like receptor 1, v 99.6 3.5E-15 1.2E-19 137.4 9.2 134 68-208 321-457 (520)
95 2je0_A Acidic leucine-rich nuc 99.6 2E-15 6.8E-20 116.2 6.3 114 61-176 32-149 (149)
96 3oja_A Leucine-rich immune mol 99.6 9.7E-16 3.3E-20 140.6 5.2 150 56-213 129-287 (487)
97 4b8c_D Glucose-repressible alc 99.6 6.2E-15 2.1E-19 141.3 10.4 115 86-208 215-329 (727)
98 4glp_A Monocyte differentiatio 99.6 7.8E-15 2.7E-19 126.6 9.8 148 59-208 103-264 (310)
99 4fmz_A Internalin; leucine ric 99.5 3.1E-14 1E-18 124.4 12.1 126 69-206 219-344 (347)
100 1h6t_A Internalin B; cell adhe 99.5 2.3E-14 7.8E-19 122.8 11.0 124 69-206 88-211 (291)
101 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.5E-14 5E-19 134.7 10.5 129 71-207 52-181 (562)
102 1h6t_A Internalin B; cell adhe 99.5 3.6E-14 1.2E-18 121.5 11.7 128 67-208 64-191 (291)
103 1xeu_A Internalin C; cellular 99.5 2.1E-14 7.1E-19 121.3 10.0 130 66-210 58-187 (263)
104 1h6u_A Internalin H; cell adhe 99.5 8.3E-14 2.8E-18 120.2 13.2 106 67-180 81-186 (308)
105 3o53_A Protein LRIM1, AGAP0063 99.5 4.8E-15 1.6E-19 128.4 5.1 133 70-210 119-252 (317)
106 1h6u_A Internalin H; cell adhe 99.5 8.5E-14 2.9E-18 120.1 11.5 128 66-207 58-185 (308)
107 1xeu_A Internalin C; cellular 99.5 8E-14 2.7E-18 117.7 10.6 128 67-209 37-164 (263)
108 1m9s_A Internalin B; cell inva 99.5 1.3E-13 4.6E-18 129.4 12.8 126 67-206 83-208 (605)
109 2ifg_A High affinity nerve gro 99.5 8.1E-14 2.8E-18 121.9 10.4 105 75-182 12-118 (347)
110 1m9s_A Internalin B; cell inva 99.5 1.4E-13 4.7E-18 129.3 12.2 128 66-207 60-187 (605)
111 2ifg_A High affinity nerve gro 99.5 9.3E-14 3.2E-18 121.5 9.3 108 98-212 11-120 (347)
112 1ds9_A Outer arm dynein; leuci 99.5 5E-16 1.7E-20 125.6 -5.6 115 66-185 43-158 (198)
113 1o6v_A Internalin A; bacterial 99.5 1.9E-13 6.5E-18 124.4 10.7 126 70-209 264-389 (466)
114 3cvr_A Invasion plasmid antige 99.5 2.9E-13 1E-17 126.0 12.2 76 69-156 98-173 (571)
115 4fmz_A Internalin; leucine ric 99.4 3.8E-13 1.3E-17 117.4 10.8 129 70-210 198-326 (347)
116 1a9n_A U2A', U2A'; complex (nu 99.4 1.5E-13 5.2E-18 108.8 7.4 114 63-180 34-153 (176)
117 1o6v_A Internalin A; bacterial 99.4 6.2E-13 2.1E-17 121.0 11.2 124 70-207 242-365 (466)
118 1dce_A Protein (RAB geranylger 99.4 6.2E-13 2.1E-17 124.0 11.2 104 96-208 442-546 (567)
119 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.7E-20 123.5 -7.3 130 71-209 18-154 (198)
120 2ast_B S-phase kinase-associat 99.4 1.2E-14 4.1E-19 126.4 -1.8 133 70-206 117-258 (336)
121 2ast_B S-phase kinase-associat 99.4 1.1E-14 3.7E-19 126.6 -2.2 135 69-207 91-234 (336)
122 3goz_A Leucine-rich repeat-con 99.4 3E-14 1E-18 125.6 -0.7 142 66-207 45-208 (362)
123 3cvr_A Invasion plasmid antige 99.4 1.1E-12 3.7E-17 122.2 9.6 116 72-208 121-243 (571)
124 3bz5_A Internalin-J, INLJ; leu 99.4 3.3E-12 1.1E-16 116.2 11.9 106 67-183 144-249 (457)
125 3bz5_A Internalin-J, INLJ; leu 99.4 8.5E-12 2.9E-16 113.4 13.8 122 67-206 123-244 (457)
126 2ca6_A RAN GTPase-activating p 99.3 1.1E-13 3.7E-18 122.9 0.3 113 91-206 183-314 (386)
127 2ca6_A RAN GTPase-activating p 99.3 6.8E-14 2.3E-18 124.2 -2.5 134 69-206 92-255 (386)
128 3g06_A SSPH2 (leucine-rich rep 99.3 2E-11 6.8E-16 114.9 13.5 77 119-208 221-297 (622)
129 1jl5_A Outer protein YOPM; leu 99.3 1.6E-11 5.5E-16 111.5 12.3 78 71-156 131-208 (454)
130 3goz_A Leucine-rich repeat-con 99.3 5.1E-13 1.7E-17 117.7 1.7 149 59-207 10-179 (362)
131 1jl5_A Outer protein YOPM; leu 99.3 5.7E-11 2E-15 107.8 13.2 109 63-185 146-254 (454)
132 3g06_A SSPH2 (leucine-rich rep 99.2 4.9E-11 1.7E-15 112.2 10.1 86 95-189 221-306 (622)
133 4ay9_X Follicle-stimulating ho 99.2 3.5E-11 1.2E-15 105.4 8.1 147 57-208 40-215 (350)
134 1z7x_W Ribonuclease inhibitor; 99.2 5.1E-13 1.7E-17 120.9 -4.0 115 66-180 222-354 (461)
135 4ay9_X Follicle-stimulating ho 99.2 5.9E-11 2E-15 104.0 8.6 118 66-186 74-220 (350)
136 1z7x_W Ribonuclease inhibitor; 99.0 1.1E-11 3.9E-16 111.9 -1.7 109 72-180 86-212 (461)
137 3un9_A NLR family member X1; l 98.9 2E-11 7E-16 108.0 -5.2 137 71-207 101-251 (372)
138 3un9_A NLR family member X1; l 98.8 7.5E-11 2.5E-15 104.4 -6.6 138 70-207 71-223 (372)
139 3ogk_B Coronatine-insensitive 98.7 4.9E-10 1.7E-14 104.4 -2.3 134 69-206 376-524 (592)
140 3sb4_A Hypothetical leucine ri 98.7 2.3E-08 8E-13 86.6 8.5 83 118-206 225-308 (329)
141 3ogk_B Coronatine-insensitive 98.6 7.8E-09 2.7E-13 96.2 1.4 102 73-175 140-251 (592)
142 3sb4_A Hypothetical leucine ri 98.6 9E-08 3.1E-12 82.8 8.0 94 94-189 225-319 (329)
143 3rw6_A Nuclear RNA export fact 98.6 4.2E-08 1.4E-12 82.5 5.1 82 100-184 148-237 (267)
144 1io0_A Tropomodulin; LRR prote 98.6 4.1E-09 1.4E-13 84.0 -1.1 112 69-180 34-164 (185)
145 2p1m_B Transport inhibitor res 98.5 8.8E-09 3E-13 95.8 -1.7 132 70-206 371-517 (594)
146 3rw6_A Nuclear RNA export fact 98.4 2.1E-07 7.3E-12 78.2 6.0 64 94-159 169-236 (267)
147 1io0_A Tropomodulin; LRR prote 98.4 1.4E-08 4.7E-13 80.9 -1.5 120 87-206 28-162 (185)
148 2p1m_B Transport inhibitor res 98.2 1.9E-07 6.4E-12 86.8 0.7 86 69-154 103-195 (594)
149 2ra8_A Uncharacterized protein 98.2 1.3E-07 4.5E-12 83.1 -1.8 40 142-181 251-293 (362)
150 2ra8_A Uncharacterized protein 98.1 5.5E-07 1.9E-11 79.2 0.1 90 93-182 217-322 (362)
151 4fdw_A Leucine rich hypothetic 98.0 1.7E-05 5.9E-10 70.6 8.9 61 66-128 175-235 (401)
152 4fdw_A Leucine rich hypothetic 97.9 2.6E-05 9E-10 69.3 8.9 132 65-206 220-356 (401)
153 3e4g_A ATP synthase subunit S, 97.9 4.2E-06 1.5E-10 65.7 2.5 35 144-178 115-150 (176)
154 3e4g_A ATP synthase subunit S, 97.7 9.4E-06 3.2E-10 63.7 2.0 94 63-156 53-153 (176)
155 3rfe_A Platelet glycoprotein I 97.6 0.0001 3.6E-09 54.8 5.5 56 123-180 12-68 (130)
156 2l2t_A Receptor tyrosine-prote 97.3 0.00061 2.1E-08 39.9 5.2 34 222-255 8-41 (44)
157 1pgv_A TMD-1, tropomodulin TMD 97.1 6E-05 2.1E-09 60.1 -0.3 60 118-177 69-136 (197)
158 3rfe_A Platelet glycoprotein I 97.1 0.0012 4.2E-08 48.9 6.8 56 75-132 12-68 (130)
159 2ks1_B Epidermal growth factor 97.1 0.00066 2.3E-08 39.9 3.8 32 223-254 10-41 (44)
160 1pgv_A TMD-1, tropomodulin TMD 97.0 6.6E-05 2.3E-09 59.9 -0.8 85 69-153 39-136 (197)
161 4gt6_A Cell surface protein; l 97.0 0.0031 1.1E-07 55.5 9.4 84 91-177 284-367 (394)
162 2jwa_A Receptor tyrosine-prote 96.8 0.0035 1.2E-07 36.6 5.6 32 222-254 10-41 (44)
163 2k1k_A Ephrin type-A receptor 96.8 0.0032 1.1E-07 35.8 5.0 33 218-250 5-37 (38)
164 4gt6_A Cell surface protein; l 96.7 0.0034 1.2E-07 55.2 7.2 105 69-179 286-390 (394)
165 4h09_A Hypothetical leucine ri 96.6 0.0044 1.5E-07 54.0 7.3 104 70-176 216-319 (379)
166 4h09_A Hypothetical leucine ri 96.5 0.014 4.9E-07 50.7 10.0 107 68-177 237-343 (379)
167 4fs7_A Uncharacterized protein 96.3 0.011 3.9E-07 51.8 7.9 61 115-177 293-353 (394)
168 4fs7_A Uncharacterized protein 96.2 0.011 3.7E-07 52.0 7.4 85 90-177 292-376 (394)
169 2k9y_A Ephrin type-A receptor 88.4 0.46 1.6E-05 27.1 3.2 8 226-233 15-22 (41)
170 1iij_A ERBB-2 receptor protein 87.8 0.23 7.7E-06 27.3 1.4 26 225-251 9-34 (35)
171 2klu_A T-cell surface glycopro 84.6 1 3.5E-05 28.4 3.3 6 230-235 13-18 (70)
172 2knc_A Integrin alpha-IIB; tra 83.6 2.7 9.1E-05 25.5 4.8 13 221-233 10-22 (54)
173 2l34_A TYRO protein tyrosine k 80.5 3.2 0.00011 22.4 4.0 25 220-244 3-27 (33)
174 2knc_B Integrin beta-3; transm 75.7 1.7 5.9E-05 28.7 2.4 12 222-233 9-20 (79)
175 2l2t_A Receptor tyrosine-prote 72.7 5.5 0.00019 23.0 3.7 31 228-258 11-41 (44)
176 2ks1_B Epidermal growth factor 70.7 13 0.00044 21.5 5.1 15 239-253 29-43 (44)
177 2l8s_A Integrin alpha-1; trans 70.3 8.8 0.0003 23.2 4.4 12 222-233 8-19 (54)
178 2klu_A T-cell surface glycopro 66.6 6.6 0.00023 24.7 3.4 10 226-235 13-22 (70)
179 2l9u_A Receptor tyrosine-prote 62.0 17 0.00057 19.6 4.4 9 243-251 25-33 (40)
180 2l8s_A Integrin alpha-1; trans 60.2 15 0.00053 22.1 4.1 25 225-249 8-32 (54)
181 2knc_A Integrin alpha-IIB; tra 58.2 24 0.00081 21.3 4.7 26 224-249 10-35 (54)
182 3qrx_B Melittin; calcium-bindi 46.5 8.5 0.00029 18.9 1.1 15 240-254 11-25 (26)
183 2k9j_B Integrin beta-3; transm 41.5 33 0.0011 19.5 3.4 11 222-232 8-18 (43)
184 1q55_A EP-cadherin, C-cadherin 39.2 9.2 0.00032 37.2 1.1 15 219-233 700-714 (880)
185 2lz0_A Uncharacterized protein 35.1 1E+02 0.0035 20.7 6.2 36 115-151 16-51 (100)
186 2l6w_A Beta-type platelet-deri 40.9 8.2 0.00028 21.5 0.0 8 244-251 28-35 (39)
187 1q90_G Cytochrome B6F complex 34.1 59 0.002 17.7 3.8 22 226-247 6-27 (37)
188 2lz0_A Uncharacterized protein 26.4 1.3E+02 0.0045 20.2 5.1 39 89-128 14-52 (100)
189 2llm_A Amyloid beta A4 protein 32.0 14 0.00048 21.0 0.0 9 225-233 18-26 (43)
190 2k1a_A Integrin alpha-IIB; sin 22.7 1.1E+02 0.0039 17.2 4.7 13 221-233 8-20 (42)
191 1vf5_G Protein PET G; photosyn 22.2 58 0.002 17.8 1.9 12 227-238 7-18 (37)
192 2ifo_A Inovirus; helical virus 20.3 1.4E+02 0.0047 17.3 4.0 12 240-251 33-44 (46)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.1e-24 Score=189.04 Aligned_cols=176 Identities=28% Similarity=0.533 Sum_probs=155.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCCcCCCCCCCCCCCCCCCCCCCCCCeeecC----CCeeEEEeeCCCCcc--cCCccCCCC
Q 024203 21 SSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNN----GRIYKLSLTNLSLQG--SISPYLSNC 94 (271)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~----~~l~~L~L~~n~l~~--~~p~~l~~l 94 (271)
.|.++|.++|.+||+.+.+|. .+.+|... .++|. +.|.++.|.. .+++.|++++|.+.+ .+|..+..+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~--~~~C~---~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT--TDCCN---RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT--SCTTT---TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC--CCCCc---CCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCC
Confidence 466789999999999998886 78999763 35774 2499999974 689999999999998 899999999
Q ss_pred CCCCEEEccC-CCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEE
Q 024203 95 TNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFD 173 (271)
Q Consensus 95 ~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 173 (271)
++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 9999999995 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCChhhhccCCCCC-CccCCCCcCCC
Q 024203 174 VSNNKLSGPIPASLGNRSGNLP-KFNASSFEGNK 206 (271)
Q Consensus 174 l~~N~l~g~ip~~~~~~~~~l~-~l~~~~~~~N~ 206 (271)
+++|.+++.+|..+.. ++ .++.+++++|.
T Consensus 156 L~~N~l~~~~p~~l~~----l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGS----FSKLFTSMTISRNR 185 (313)
T ss_dssp CCSSCCEEECCGGGGC----CCTTCCEEECCSSE
T ss_pred CcCCcccCcCCHHHhh----hhhcCcEEECcCCe
Confidence 9999999999998887 43 55566666664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.3e-22 Score=195.84 Aligned_cols=120 Identities=40% Similarity=0.669 Sum_probs=72.1
Q ss_pred CCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEc
Q 024203 95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174 (271)
Q Consensus 95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 174 (271)
++|+.||+++|+++|.+|..++.+++|+.|++++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|++|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCCCCCCCCC
Q 024203 175 SNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSK 219 (271)
Q Consensus 175 ~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~~~~~~~~ 219 (271)
++|+++|.+|.. +++..+...++.||+.+||.|++.|...
T Consensus 712 s~N~l~g~iP~~-----~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 712 SNNNLSGPIPEM-----GQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp CSSEEEEECCSS-----SSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred cCCcccccCCCc-----hhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence 555555555542 2356677788999999999988765433
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=7.9e-22 Score=191.68 Aligned_cols=180 Identities=20% Similarity=0.261 Sum_probs=147.5
Q ss_pred CCCCChhHHHHHHHHHHhCCCCCCcCCCCCCCC---CCCC--CCCCCCCC------------CCeeec-CCCeeEEEeeC
Q 024203 19 LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKST---FSNA--CNGFTSYL------------PGATCN-NGRIYKLSLTN 80 (271)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~---~~~~--c~~~~~~~------------~~~~~~-~~~l~~L~L~~ 80 (271)
.+++..+|..+|.++|+++.+| +|...+ ..+| |+ | +|+.|+ -.+|+.|+|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~-----W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~ 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLN-----WNFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCS-----CCCSSCGGGTTCCTTEEECTTSCEEEEECTT
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccc-----cccccccccccCcCceEecCCCCEEEEECcc
Confidence 3444557999999999999876 776543 1245 75 6 999997 47899999999
Q ss_pred CCCcccCCccCCCCCCCCEEEc-cCCCCCCC-------------------------------------------------
Q 024203 81 LSLQGSISPYLSNCTNLQSLDL-SSNALTGS------------------------------------------------- 110 (271)
Q Consensus 81 n~l~~~~p~~l~~l~~L~~L~L-s~N~l~~~------------------------------------------------- 110 (271)
+++.|.+|+.++++++|+.|+| ++|.++|.
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 9999999999999999999999 77754333
Q ss_pred ---------------------------CCCCccCCcccceeecccccCCC-----------------CCchhhh--cCcc
Q 024203 111 ---------------------------IPADLQYLVNLAVLNLSANRLAG-----------------EIPPQLT--LCAY 144 (271)
Q Consensus 111 ---------------------------~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~ 144 (271)
+|..+..+++|+.|+|++|.+++ .+|..++ ++++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 77888899999999999999997 3888877 9999
Q ss_pred CCeeeccCCcCCCCCchhccCCCCCCEEEccCCC-CCC-CCChhhhccC---CCCCCccCCCCcCCCCC
Q 024203 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK-LSG-PIPASLGNRS---GNLPKFNASSFEGNKDL 208 (271)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~g-~ip~~~~~~~---~~l~~l~~~~~~~N~~~ 208 (271)
|++|++++|++.+.+|..++++++|++|++++|+ ++| .+|..++++. ..+++++.+++++|...
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 9999999999999999999999999999999998 888 7888776532 23446666777776644
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.9e-21 Score=184.01 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=148.8
Q ss_pred CCChhHHHHHHHHHHhCCCCCCc--------CCCCCCCCCCCCCCCCCCCC---CCeeecC-CCeeEEEeeCCCCcccCC
Q 024203 21 SSDPNDEACLTHLSQSLKDPYKN--------LQNWTKSTFSNACNGFTSYL---PGATCNN-GRIYKLSLTNLSLQGSIS 88 (271)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~~~c~~~~~~~---~~~~~~~-~~l~~L~L~~n~l~~~~p 88 (271)
++...|..||.+++.++.++... ..+|+.. .++|. | +|+.|+. .+|+.|+|+++++.|.+|
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~--~~~c~-----w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN--KELDM-----WGAQPGVSLNSNGRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS--SCGGG-----TTCCTTEEECTTCCEEEEECTTSCCEEEEC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC--CCccc-----ccCCCCeEEcCCCCEEEEEecCcccCCcCC
Confidence 34446889999999998765432 2379863 35675 8 9999964 589999999999999999
Q ss_pred ccCCCCCCCCEEEccCCCC-------------------------------------------------------------
Q 024203 89 PYLSNCTNLQSLDLSSNAL------------------------------------------------------------- 107 (271)
Q Consensus 89 ~~l~~l~~L~~L~Ls~N~l------------------------------------------------------------- 107 (271)
+.++++++|++|+|++|.+
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 9999999999999998843
Q ss_pred -----------------CCCCCCCccCCcccceeecccccCCCC-----------------Cchhhh--cCccCCeeecc
Q 024203 108 -----------------TGSIPADLQYLVNLAVLNLSANRLAGE-----------------IPPQLT--LCAYLNVIDLH 151 (271)
Q Consensus 108 -----------------~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls 151 (271)
+| +|+.++.+++|++|++++|.+++. +|..++ ++++|++|+++
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 34 788899999999999999999985 899988 99999999999
Q ss_pred CCcCCCCCchhccCCCCCCEEEccCCC-CCC-CCChhhhcc--CCCCCCccCCCCcCCCCC
Q 024203 152 DNLLTGQIPQQLGLLVRLSAFDVSNNK-LSG-PIPASLGNR--SGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 152 ~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~g-~ip~~~~~~--~~~l~~l~~~~~~~N~~~ 208 (271)
+|++.+.+|..++++++|++|++++|+ ++| .+|..++.+ ...+++++.+++++|...
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 999999999999999999999999998 998 899888762 011256677777777644
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.2e-20 Score=155.53 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=125.0
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 57999999999999777778999999999999999999888999999999999999999999665566789999999999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
++|++++..|..|..+++|++|++++|.+++..+..+.. ++.++.+++++|++.|.|.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP----LRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC----CCCCCEEEeCCCCcCCCCc
Confidence 999999888899999999999999999999766666665 7888999999999999764
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=4.1e-20 Score=155.14 Aligned_cols=151 Identities=20% Similarity=0.192 Sum_probs=129.8
Q ss_pred CCCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC
Q 024203 56 CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (271)
Q Consensus 56 c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 135 (271)
.|.+....+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 44 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 44 STGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC
Confidence 34455555566778899999999999999877778899999999999999999777777889999999999999999766
Q ss_pred chhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCC
Q 024203 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (271)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (271)
+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+.. ++.++.+++++|++.|.
T Consensus 124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR----LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSCCBCTT
T ss_pred hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC----CCCCCEEEeeCCceeCC
Confidence 667889999999999999999666667899999999999999999766666655 78889999999999886
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=4.6e-21 Score=185.03 Aligned_cols=161 Identities=25% Similarity=0.349 Sum_probs=108.2
Q ss_pred cCCCCCChhHHHHHHHHHHhCCCCCCcCCCCCCCCCCCCCCCCCCCCCCeeecCCCeeEEEeeCCCCccc---CCccCCC
Q 024203 17 LPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGS---ISPYLSN 93 (271)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~---~p~~l~~ 93 (271)
+.++++.++|.++|++||+.+.||. .+.+|... .++|. |.|+.|+..+|+.|+|+++.+.|. +|+.+..
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~--~~~C~-----w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSN--KNPCT-----FDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS 75 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT--SCGGG-----STTEEEETTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCC--CCCcC-----CcceEECCCcEEEEECCCCCcCCccCccChhHhc
Confidence 3455567789999999999999988 89999853 36775 999999988999999999999887 6666666
Q ss_pred CCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCch--hhhcCccCCeeeccCCcCCCCCchhc-cCCCCCC
Q 024203 94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAYLNVIDLHDNLLTGQIPQQL-GLLVRLS 170 (271)
Q Consensus 94 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~ 170 (271)
+++|+.++++.|.+. .+|+.+..+++|++|+|++|.++|.+|. .++++++|++|++++|.+++.+|..+ ..+++|+
T Consensus 76 L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 666666666555544 3445556666666666666666655555 55666666666666666655555443 4555566
Q ss_pred EEEccCCCCCCCCChh
Q 024203 171 AFDVSNNKLSGPIPAS 186 (271)
Q Consensus 171 ~L~l~~N~l~g~ip~~ 186 (271)
+|++++|.+++..|..
T Consensus 155 ~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 155 VLDLSANSISGANVVG 170 (768)
T ss_dssp EEECCSSCCEEETHHH
T ss_pred EEECCCCccCCcCChh
Confidence 6666666555544443
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.8e-21 Score=168.84 Aligned_cols=152 Identities=32% Similarity=0.490 Sum_probs=97.6
Q ss_pred CCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCC-CCCEEEccCCCCCCCCCCCc----------------------
Q 024203 59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCT-NLQSLDLSSNALTGSIPADL---------------------- 115 (271)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~---------------------- 115 (271)
+.+..|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG
T ss_pred cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHH
Confidence 3334555566666666666666666666666666665 66666666666555555444
Q ss_pred -cCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCC
Q 024203 116 -QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNL 194 (271)
Q Consensus 116 -~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l 194 (271)
..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. +.+
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-----~~l 290 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-----GNL 290 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-----TTG
T ss_pred HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-----ccc
Confidence 4455555555555555543333 455566666666666666666666666777777777777777666654 237
Q ss_pred CCccCCCCcCCCCCCCCCCCCC
Q 024203 195 PKFNASSFEGNKDLYGYPLPPM 216 (271)
Q Consensus 195 ~~l~~~~~~~N~~~c~~~~~~~ 216 (271)
++++.+++.+|+++|+.|.+.|
T Consensus 291 ~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp GGSCGGGTCSSSEEESTTSSCC
T ss_pred cccChHHhcCCCCccCCCCCCC
Confidence 7888899999999999877654
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=7.1e-20 Score=151.82 Aligned_cols=137 Identities=20% Similarity=0.186 Sum_probs=122.6
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
+++++|++++|.+.+..|..+..+++|++|++++|.++...+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 67999999999999888889999999999999999998555566889999999999999999777777899999999999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
++|+++ .+|..+..+++|++|++++|++++..+..+.. ++.++.+++.+|++.|.++
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR----LSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT----CTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC----CCCCCEEEeeCCCccCCcc
Confidence 999999 88999999999999999999999655555555 7889999999999998763
No 10
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=153.28 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=125.0
Q ss_pred CCeeEEEeeCCCCcccCC-ccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 71 GRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
..++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 356899999999997655 4578999999999999999977777899999999999999999988888899999999999
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
+++|++++..|..+..+++|++|++++|++++..|..+.. ++.++.+++++|++.|.++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT----LHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT----CTTCCEEECCSCCEECSGG
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC----CCCCCEEEecCcCCcCCCc
Confidence 9999999888999999999999999999999887888776 7889999999999999764
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.1e-19 Score=151.37 Aligned_cols=140 Identities=21% Similarity=0.171 Sum_probs=84.5
Q ss_pred ecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCe
Q 024203 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (271)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (271)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 44455555555555555433344455556666666666665444445556666666666666666444444566666666
Q ss_pred eeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCC
Q 024203 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (271)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (271)
|++++|++++..+..+..+++|++|++++|++++..+..+.. ++.++.+++++|++.|++
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS----LEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCSS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc----ccCCCEEEecCCCeeCCC
Confidence 666666666544455666667777777777666433333433 667778888888888876
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=2.6e-19 Score=152.01 Aligned_cols=143 Identities=23% Similarity=0.170 Sum_probs=120.9
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 45567889999999999987666678889999999999999997777678889999999999999987767777889999
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
++|++++|++++..+..+..+++|++|++++|.+++..|..+.. ++.++.+++++|++.|.++
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR----LTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC----CcCCCEEEccCCCccccCc
Confidence 99999999999777777888999999999999999766665555 7888899999999988764
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.9e-20 Score=163.53 Aligned_cols=179 Identities=18% Similarity=0.281 Sum_probs=97.3
Q ss_pred CCCCCChhHHHHHHHHHHhC-CCCCCcCCCCC---CCCCCCCCCCCCCCCCCeee-------------------------
Q 024203 18 PLCSSDPNDEACLTHLSQSL-KDPYKNLQNWT---KSTFSNACNGFTSYLPGATC------------------------- 68 (271)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~~~c~~~~~~~~~~~~------------------------- 68 (271)
...++..++.++|..||..+ .++.+....|. .. ..+.|+ |.++.|
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~-~~~~~~-----~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l 93 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIET-----RTGRALKATADLLEDATQPGRVALELRSVPL 93 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTT-CTTSCC-----SHHHHHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccc-cccccc-----cCCcchhhhHHHHhcccccceeEEEccCCCc
Confidence 34455667889999999987 46766677784 11 123454 444433
Q ss_pred --------cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhh
Q 024203 69 --------NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLT 140 (271)
Q Consensus 69 --------~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 140 (271)
.+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+.
T Consensus 94 ~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 94 PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 3344444444444444 44444444455555555555444 4444444455555555555444444444433
Q ss_pred c---------CccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCC
Q 024203 141 L---------CAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (271)
Q Consensus 141 ~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (271)
. +++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..+.. +++++.+++++|.....
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~----l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH----LPKLEELDLRGCTALRN 244 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG----CTTCCEEECTTCTTCCB
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc----CCCCCEEECcCCcchhh
Confidence 2 455555555555555 55555556666666666666666 34544444 56667777777665443
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=8e-19 Score=143.01 Aligned_cols=139 Identities=21% Similarity=0.170 Sum_probs=120.4
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
.+++++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35799999999999966666788999999999999999966666678999999999999999976666789999999999
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
+++|++++..+..+..+++|++|++++|.+++..+..+.. +++++.+++++|++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR----LTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSCCBCCCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc----CCCccEEEecCCCeecCCC
Confidence 9999999776777899999999999999999655544555 7889999999999988764
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=2.8e-19 Score=144.25 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=102.1
Q ss_pred eEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCC-CccCCcccceeecccccCCCCCchhhhcCccCCeeeccC
Q 024203 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPA-DLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD 152 (271)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 152 (271)
+++++++|++. .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56788888886 67765543 788888888888755443 377888888888888888877788888888888888888
Q ss_pred CcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 153 NLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 153 N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
|++++..|..+..+++|++|++++|++++.+|..+.. ++.++.+++++|++.|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH----LNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT----CTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc----CCCCCEEEeCCCCccCcCc
Confidence 8888777777888888888888888888777777665 6777788888888877653
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=3.1e-19 Score=152.33 Aligned_cols=142 Identities=24% Similarity=0.190 Sum_probs=78.7
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 33444555555555555554444445555555555555555554333445555555555555555554333445555556
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (271)
+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+.. ++.++.+++++|++.|++
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP----LRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT----CTTCCEEECCSSCEECSG
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc----CcccCEEeccCCCccCCC
Confidence 66666666665555555666666666666666666433333443 566667777777777654
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.1e-18 Score=149.83 Aligned_cols=138 Identities=27% Similarity=0.191 Sum_probs=105.8
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
.+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 4566777777777776 567777778888888888888886666678888888888888888886666667778888888
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
++++|++++..+..+..+++|++|++++|+++ .+|..+.. .+.++.+++.+||+.|.|.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~----~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG----SHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT----TCCCSEEECCSCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc----cccCCeEEeCCCCccCcCc
Confidence 88888888544455677888888888888887 67777665 5577888899999988763
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.1e-18 Score=152.37 Aligned_cols=142 Identities=17% Similarity=0.282 Sum_probs=90.0
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccC---------Ccccceeecc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQY---------LVNLAVLNLS 127 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~---------l~~L~~L~Ls 127 (271)
|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.. +++|++|+++
T Consensus 114 n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 114 AGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp SCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE
T ss_pred CCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc
Confidence 3444 46777777788888888888887 67777777777777777777766677665543 6666666666
Q ss_pred cccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 128 ANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 128 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
+|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|++|++++|++.+.+|..+.+ +++++.+++++|.
T Consensus 192 ~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~----l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG----RAPLKRLILKDCS 264 (328)
T ss_dssp EECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC----CCCCCEEECTTCT
T ss_pred CCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcC----CCCCCEEECCCCC
Confidence 66666 55666666666666666666666 34445555566666666665555555555444 3344444444443
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=141.15 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=114.0
Q ss_pred eEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCC
Q 024203 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153 (271)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 153 (271)
+.+++++|.+. .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57889999988 6777654 68999999999998 78889999999999999999999877788999999999999999
Q ss_pred cCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
++++..|..|..+++|++|++++|.+++..+..+.. ++.++.+++++|++.|+|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND----LSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT----CTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc----CccccEEEeCCCCeecCCc
Confidence 999887888999999999999999999544445555 7888899999999999764
No 20
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=9.9e-19 Score=154.45 Aligned_cols=152 Identities=24% Similarity=0.136 Sum_probs=114.1
Q ss_pred CCCCCCCCCeee-cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC
Q 024203 57 NGFTSYLPGATC-NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (271)
Q Consensus 57 ~~~~~~~~~~~~-~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 135 (271)
|.+....++.+. ++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 128 (361)
T 2xot_A 49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD 128 (361)
T ss_dssp SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC
Confidence 445444455555 7788888888888888666677888888888888888888666667888888888888888888777
Q ss_pred chhhhcCccCCeeeccCCcCCCCCchhc---cCCCCCCEEEccCCCCCCCCChhhhccCCCCCC--ccCCCCcCCCCCCC
Q 024203 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQL---GLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK--FNASSFEGNKDLYG 210 (271)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~--l~~~~~~~N~~~c~ 210 (271)
|..|..+++|+.|++++|++++..+..+ ..+++|+.|++++|+|++..+..+.. ++. +..+++.+|++.|+
T Consensus 129 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK----LPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH----SCHHHHTTEECCSSCEECC
T ss_pred HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh----ccHhhcceEEecCCCccCC
Confidence 7888888888888888888884333334 56888888888888888544445555 444 36678899999987
Q ss_pred CC
Q 024203 211 YP 212 (271)
Q Consensus 211 ~~ 212 (271)
|.
T Consensus 205 C~ 206 (361)
T 2xot_A 205 CK 206 (361)
T ss_dssp HH
T ss_pred cC
Confidence 63
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.76 E-value=2.3e-18 Score=155.96 Aligned_cols=139 Identities=20% Similarity=0.164 Sum_probs=127.4
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
.++++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 36899999999999988899999999999999999999988888999999999999999999988889999999999999
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
+++|++++..|..+..+++|++|++++|++++..+..+.. ++.++.+++++|++.|.+|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhcc----CCcccEEEccCCCcccCCC
Confidence 9999999888999999999999999999999654444454 7889999999999999876
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.1e-18 Score=150.41 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=83.0
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCC-CCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 3344555555555555555555555555666666666665554 345555666666666666666665555566666666
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCC-CCccCCCCcCCCCCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNL-PKFNASSFEGNKDLYGY 211 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l-~~l~~~~~~~N~~~c~~ 211 (271)
++|++++|++++..+..+..+++|++|++++|++++..|..+.. + +.++.+++++|++.|.+
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH----FPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC----CCTTCCEEECTTCCEECSG
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh----hhccCCEEEccCCCeeccc
Confidence 66666666666544445566666666666666666555555544 3 25566666666666654
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.4e-17 Score=139.58 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=120.4
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 57899999999999888888999999999999999999888888999999999999999999777788899999999999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
++|++++..+..+..+++|++|++++|.+++..+..+.. +++++.+++++|...
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK----LTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc----CcCCCEEECCCCcCC
Confidence 999999766677899999999999999999665556665 788999999999754
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=1.3e-18 Score=163.20 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=125.0
Q ss_pred CeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCC-CCCCCccCCcccceeecccccCCCCCchhhhcCc
Q 024203 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA 143 (271)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 143 (271)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+..++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 455677888899999998888888888889999999999998886 3688888999999999999999988888899999
Q ss_pred cCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCC-CccCCCCcCCCCCCCCCC
Q 024203 144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP-KFNASSFEGNKDLYGYPL 213 (271)
Q Consensus 144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~-~l~~~~~~~N~~~c~~~~ 213 (271)
+|++|++++|++++..|..+..+++|++|++++|+++ .+|..+.. ++ .++.+++++|++.|+|+.
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~----l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH----FPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG----SCTTCCEEECCSCCCCCSSTT
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh----hcccCcEEEccCCCcccCCcc
Confidence 9999999999999888899999999999999999998 67877766 55 488899999999998865
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=4.3e-17 Score=138.08 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=121.0
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....+..+.++++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 47 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH
Confidence 44444444567788999999999999985545556889999999999999996666677889999999999999997777
Q ss_pred hhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.+ ++.++.+++++|...
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK----LTELKTLKLDNNQLK 194 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc----CCCcCEEECCCCcCC
Confidence 78889999999999999999666666889999999999999998655555555 778888899988653
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=3e-18 Score=160.69 Aligned_cols=145 Identities=16% Similarity=0.158 Sum_probs=129.6
Q ss_pred CeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCC-CCCCCCCccCCcccceeecccccCCCCCchhhhcCc
Q 024203 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNAL-TGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA 143 (271)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 143 (271)
..+..+.+++.+++++|.+.+..+..+..++.++.|++++|.+ .+..|..+..+++|++|++++|++++..|..|.+++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 3455678899999999999988888899999999999999975 445788899999999999999999988899999999
Q ss_pred cCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
+|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+ .++++.+++++||+.|+|.
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF---PSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC---CTTCCEEECTTCCBCCSGG
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh---hCcCCEEEeeCCCCcccCC
Confidence 99999999999998888899999999999999999999888888762 2468889999999999874
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.7e-17 Score=141.47 Aligned_cols=114 Identities=25% Similarity=0.184 Sum_probs=54.5
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCC-CCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA-LTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
+..+++|++|++++|.+.+..|..+..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 3444555555555555554444445555555555555554 443334444445555555555555544444444444445
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
++|++++|++++..+..+..+++|++|++++|.++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 55555544444333333444444444444444444
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=1.7e-18 Score=163.88 Aligned_cols=132 Identities=19% Similarity=0.330 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCeeecCCCeeEEEeeCCCCccc-----------------CCccCC--CCCCCCEEEccCCCCCCCCCCCc
Q 024203 55 ACNGFTSYLPGATCNNGRIYKLSLTNLSLQGS-----------------ISPYLS--NCTNLQSLDLSSNALTGSIPADL 115 (271)
Q Consensus 55 ~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~ 115 (271)
.+|.+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+
T Consensus 191 ~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred ccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 3667777 888899999999999999999985 999999 99999999999999999999999
Q ss_pred cCCcccceeeccccc-CCC-CCchhhhcC------ccCCeeeccCCcCCCCCch--hccCCCCCCEEEccCCCCCCCCCh
Q 024203 116 QYLVNLAVLNLSANR-LAG-EIPPQLTLC------AYLNVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIPA 185 (271)
Q Consensus 116 ~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~ 185 (271)
..+++|++|++++|+ ++| .+|..++.+ ++|++|++++|+++ .+|. .++.+++|++|++++|.++|.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 999999999999998 998 899998887 89999999999999 8998 89999999999999999998888
Q ss_pred hhhc
Q 024203 186 SLGN 189 (271)
Q Consensus 186 ~~~~ 189 (271)
.+..
T Consensus 348 ~~~~ 351 (636)
T 4eco_A 348 AFGS 351 (636)
T ss_dssp CCEE
T ss_pred hhCC
Confidence 6554
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=151.14 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=109.6
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCcc-------------------------CCCCCCCCEEEccCCCCCCCC
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-------------------------LSNCTNLQSLDLSSNALTGSI 111 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~-------------------------l~~l~~L~~L~Ls~N~l~~~~ 111 (271)
|.+....++.+..+++|++|++++|.+....+.. +.++++|++|++++|.++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 4444444456677888888888888877443333 444555666666666665 44
Q ss_pred CCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccC
Q 024203 112 PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191 (271)
Q Consensus 112 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~ 191 (271)
| .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|++|++++|++++..+..+..
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-- 277 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP-- 277 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS--
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc--
Confidence 4 3566777777778888877777778888888888888888888777778888888888888888888555544444
Q ss_pred CCCCCccCCCCcCCCCCCCCCC
Q 024203 192 GNLPKFNASSFEGNKDLYGYPL 213 (271)
Q Consensus 192 ~~l~~l~~~~~~~N~~~c~~~~ 213 (271)
++.++.+++++||+.|+|.+
T Consensus 278 --l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 278 --LHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp --CTTCCEEECCSSCEECSSTT
T ss_pred --ccCCCEEEcCCCCccCCCCc
Confidence 77888999999999998754
No 30
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.9e-17 Score=131.59 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=105.4
Q ss_pred CeeEEEeeCCCCcccCCc-cCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 72 RIYKLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 789999999999965554 4889999999999999999888999999999999999999999888888999999999999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCCh
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 185 (271)
++|++++..|..+..+++|++|++++|++++..+-
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999999999999999999999987653
No 31
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=3.4e-17 Score=129.96 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=88.3
Q ss_pred eEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCC
Q 024203 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153 (271)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 153 (271)
+.++++++++. .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45666777766 4554332 57777777777777555555677777777777777777555555677777777777777
Q ss_pred cCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCC
Q 024203 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (271)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (271)
++++..+..+..+++|++|++++|.+++..+..+.. ++.++.+++++|++.|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC----CcccCEEEecCCCeeccC
Confidence 777555556677777777777777777433333333 566777777777776643
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.6e-17 Score=140.98 Aligned_cols=150 Identities=20% Similarity=0.202 Sum_probs=104.9
Q ss_pred CCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCC-CCch
Q 024203 59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EIPP 137 (271)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~ 137 (271)
+....++.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|.
T Consensus 64 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch
Confidence 333334456667788888888888886666777888888888888888876555567778888888888888875 2577
Q ss_pred hhhcCccCCeeeccCCcCCCCCchhccCC---------------------------CCCCEEEccCCCCCCCCChhhhcc
Q 024203 138 QLTLCAYLNVIDLHDNLLTGQIPQQLGLL---------------------------VRLSAFDVSNNKLSGPIPASLGNR 190 (271)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---------------------------~~L~~L~l~~N~l~g~ip~~~~~~ 190 (271)
.+..+++|++|++++|++++..+..+..+ .+|++|++++|.+++..+..+..
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~- 222 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR- 222 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT-
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc-
Confidence 77778888888888887775544433322 25666666667666433333333
Q ss_pred CCCCCCccCCCCcCCCCCCCCC
Q 024203 191 SGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 191 ~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
+++++.+++++|++.|+++
T Consensus 223 ---l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 223 ---LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ---CCSCCEEECCSSCBCCCTT
T ss_pred ---cccccEEEccCCcccccCC
Confidence 7778888899999988764
No 33
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=2.1e-17 Score=130.06 Aligned_cols=131 Identities=24% Similarity=0.247 Sum_probs=112.3
Q ss_pred CCeeEEEeeCCCCc-ccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 71 GRIYKLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 71 ~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67899999999998 77888889999999999999999855 7888999999999999999977888888899999999
Q ss_pred ccCCcCCCCC-chhccCCCCCCEEEccCCCCCCCCC---hhhhccCCCCCCccCCCCcCCCC
Q 024203 150 LHDNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIP---ASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 150 Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~ip---~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+.. ++.++.+++.+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL----LPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT----CSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh----CccCcEecCCCCCh
Confidence 9999999532 2778999999999999999985443 25554 78888888888864
No 34
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.7e-17 Score=128.03 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=110.4
Q ss_pred CCeeEEEeeCCCCc-ccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 71 GRIYKLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 71 ~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57899999999998 78899899999999999999999955 7889999999999999999977898888899999999
Q ss_pred ccCCcCCCC-CchhccCCCCCCEEEccCCCCCCCCC---hhhhccCCCCCCccCCCCc
Q 024203 150 LHDNLLTGQ-IPQQLGLLVRLSAFDVSNNKLSGPIP---ASLGNRSGNLPKFNASSFE 203 (271)
Q Consensus 150 Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~ip---~~~~~~~~~l~~l~~~~~~ 203 (271)
+++|.+++. .|..+..+++|++|++++|.+++..+ ..+.. +++++.++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL----LPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH----CTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH----CCCcccccCC
Confidence 999999963 34789999999999999999996544 35655 6667666654
No 35
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=135.93 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=114.3
Q ss_pred CCCCCCC-CCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC
Q 024203 57 NGFTSYL-PGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (271)
Q Consensus 57 ~~~~~~~-~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 135 (271)
|.+.... ++.+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 42 N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 42 NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 4444332 245678999999999999999777778999999999999999999777777999999999999999999888
Q ss_pred chhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCC
Q 024203 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (271)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 184 (271)
|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999999999999998889999999999999999999987655
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2.5e-17 Score=149.53 Aligned_cols=151 Identities=19% Similarity=0.154 Sum_probs=112.4
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCcc-------------------------CCCCCCCCEEEccCCCCCCCC
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-------------------------LSNCTNLQSLDLSSNALTGSI 111 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~-------------------------l~~l~~L~~L~Ls~N~l~~~~ 111 (271)
|.+....++.+..+++|++|++++|.+....+.. +..+++|++|++++|.++ .+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cc
Confidence 3444444555677888999999988887443333 445566666666666666 33
Q ss_pred CCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccC
Q 024203 112 PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191 (271)
Q Consensus 112 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~ 191 (271)
| .+..+++|+.|++++|.+++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-- 288 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP-- 288 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT--
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc--
Confidence 3 4667778888888888888777888888888888888888888777888888888999999999888555554444
Q ss_pred CCCCCccCCCCcCCCCCCCCCC
Q 024203 192 GNLPKFNASSFEGNKDLYGYPL 213 (271)
Q Consensus 192 ~~l~~l~~~~~~~N~~~c~~~~ 213 (271)
+++++.+++++||+.|+|..
T Consensus 289 --l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 289 --LRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp --CTTCCEEECCSSCEECSTTT
T ss_pred --ccCCCEEEccCCCcCCCCCc
Confidence 77888999999999998753
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1.1e-16 Score=135.88 Aligned_cols=136 Identities=23% Similarity=0.186 Sum_probs=120.2
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 5678999999999999985 3 4788999999999999999977777789999999999999999977777789999999
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
+|++++|++++..|..+..+++|++|++++|++++..|..+.. ++.++.+++++|...
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK----LTQLKDLRLYQNQLK 194 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC----CccCCEEECCCCcCC
Confidence 9999999999777777899999999999999999766655555 788889999998754
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=1.2e-17 Score=156.66 Aligned_cols=139 Identities=24% Similarity=0.203 Sum_probs=77.1
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCC---CCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG---SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.++++++|++++|.+.+..|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 34445555555555544444445555555555555555543 112334455555555555555555555555555556
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
++|++++|++++..|..+..+++| +|++++|++++..|..+.. ++.++.+++++||+.|.|+
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI----LSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH----HHTSSEEECTTCCEECSGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc----CCCCCEEeCCCCCccccCC
Confidence 666666665555555555555555 5666666665554544444 5566777788888777653
No 39
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=4.9e-17 Score=133.86 Aligned_cols=127 Identities=20% Similarity=0.203 Sum_probs=112.6
Q ss_pred CCCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC
Q 024203 56 CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (271)
Q Consensus 56 c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 135 (271)
.|.+....++.+..+++|+.|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|++++|.+++..
T Consensus 41 ~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 41 QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 34555444557778899999999999999888999999999999999999999555556788999999999999999888
Q ss_pred chhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCC
Q 024203 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (271)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (271)
|..|..+++|++|++++|++++..+..+..+++|++|++++|++...
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 89999999999999999999977777899999999999999998753
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=3.7e-17 Score=153.26 Aligned_cols=133 Identities=21% Similarity=0.179 Sum_probs=113.1
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
.++++|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36899999999999766678999999999999999999666777999999999999999999766678899999999999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCC-CCChhhhccCCCCCCccCCCCcCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG-PIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
++|++++..+..|+++++|++|++++|.+++ .+|..+.. ++.++.+++++|..
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~----l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----LTNLEHLDLSSNKI 185 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----CTTCCEEECCSSCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc----chhhhhhcccCccc
Confidence 9999996666678999999999999999875 35777666 67777778877764
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=6.4e-17 Score=138.71 Aligned_cols=145 Identities=26% Similarity=0.221 Sum_probs=119.0
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....+..+..+++|++|++++|.+++. +.. ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|
T Consensus 41 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~ 117 (290)
T 1p9a_G 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117 (290)
T ss_dssp SCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred CcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH
Confidence 444444455667788999999999998853 333 78899999999999998 788888899999999999999997777
Q ss_pred hhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+.. ++.++.+++++|...
T Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG----LENLDTLLLQENSLY 185 (290)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT----CTTCCEEECCSSCCC
T ss_pred HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC----cCCCCEEECCCCcCC
Confidence 88999999999999999999776777889999999999999999443333444 778888999999754
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=3e-17 Score=152.89 Aligned_cols=148 Identities=26% Similarity=0.365 Sum_probs=115.8
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcc--cCCccCCCCCCCCEEEccCCCCCCCCCCC-ccCCcccceeecccccCCC
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAG 133 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~ 133 (271)
|.+.+..+..+.+++++++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 44554556667778888888888888875 23456788888888888888888645553 6778888888888888877
Q ss_pred CCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChh-hhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS-LGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 134 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~-~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +.. ++.++.+++++|++.|+|+
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~----l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR----LTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT----CTTCCCEECCSCCBCCCHH
T ss_pred chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhc----CCCCCEEEecCCCcCCCcc
Confidence 6665443 68999999999998 78887779999999999999999 67766 544 7888899999999998753
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=5.3e-17 Score=154.25 Aligned_cols=147 Identities=20% Similarity=0.130 Sum_probs=117.9
Q ss_pred CCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCC--------CCCccCCcccceeecccccCCCC
Q 024203 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI--------PADLQYLVNLAVLNLSANRLAGE 134 (271)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~ 134 (271)
.|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|+++..
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 4555667788888999998888666667888889999999998887431 12367788999999999999844
Q ss_pred CchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhh-ccCCCCCCccCCCCcCCCCCCCCCC
Q 024203 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG-NRSGNLPKFNASSFEGNKDLYGYPL 213 (271)
Q Consensus 135 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~-~~~~~l~~l~~~~~~~N~~~c~~~~ 213 (271)
.+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..|..+. . ++.++.+++++||+.|+|+.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA----FRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH----HTTCSEEECTTCCCCBCCCC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc----ccccCEEEccCCCcccCCcc
Confidence 445688899999999999999966666678889999999999999976666665 3 67788899999999999974
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=153.21 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=117.1
Q ss_pred eecCCCeeEEEeeCCCCcccCC-ccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCC-CCCchhhhcCcc
Q 024203 67 TCNNGRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-GEIPPQLTLCAY 144 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~ 144 (271)
+..++++++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4556677777777777775544 45778888888888888888778888888889999999999887 567888888899
Q ss_pred CCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCCC
Q 024203 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPL 213 (271)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~~ 213 (271)
|++|++++|++++..|..+..+++|++|++++|++++..|..+.+ ++.++.+++++|++.|.++.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc----ccCCcEEEecCCcccCCCcc
Confidence 999999999999888888889999999999999998776666655 77888999999999988753
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=151.89 Aligned_cols=145 Identities=24% Similarity=0.293 Sum_probs=94.9
Q ss_pred CCCCCCCeeecCCCeeEEEeeCCCCcc--cCCccCCCCCCCCEEEccCCCCCCCCCCC-ccCCcccceeecccccCCCCC
Q 024203 59 FTSYLPGATCNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEI 135 (271)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~ 135 (271)
+....|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++..
T Consensus 336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415 (520)
T ss_dssp CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG
T ss_pred cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch
Confidence 333345555566666666666666664 34455666666677777766666545543 556666777777777766555
Q ss_pred chhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChh-hhccCCCCCCccCCCCcCCCCCCCC
Q 024203 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS-LGNRSGNLPKFNASSFEGNKDLYGY 211 (271)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~-~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (271)
|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +.. ++.++.+++++|++.|.|
T Consensus 416 ~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~----l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 416 FRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR----LTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp GGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT----CTTCCEEECCSSCBCCCH
T ss_pred hhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhcc----CCcccEEECcCCCCcccC
Confidence 55443 56777777777777 67776667777888888888777 55654 433 667777788888877754
No 46
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.9e-16 Score=131.04 Aligned_cols=127 Identities=24% Similarity=0.206 Sum_probs=111.6
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....+..+..+++|++|+|++|.+....+..+..+++|++|+|++|.+++..+..|..+++|++|++++|+++ .+|
T Consensus 50 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence 4455555667778899999999999998555566789999999999999999776777889999999999999999 889
Q ss_pred hhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCC
Q 024203 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 184 (271)
..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999999999999999999996666778999999999999999987654
No 47
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.3e-16 Score=128.39 Aligned_cols=128 Identities=22% Similarity=0.168 Sum_probs=109.7
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 117 (208)
T 2o6s_A 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117 (208)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence 44444445556778999999999999996656667899999999999999996666668899999999999999997767
Q ss_pred hhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCC
Q 024203 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 184 (271)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..|
T Consensus 118 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 118 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 778999999999999999997666678999999999999999887665
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=9.5e-17 Score=150.50 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=108.2
Q ss_pred CCCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC
Q 024203 56 CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (271)
Q Consensus 56 c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 135 (271)
.|.+....+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 34444444556667778888888888888666777788888888888888888666777888888888888888887666
Q ss_pred chhhhcCccCCeeeccCCcCCC-CCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCC-ccCCCCcCCCC
Q 024203 136 PPQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK-FNASSFEGNKD 207 (271)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~-l~~~~~~~N~~ 207 (271)
+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+..+. .++. +..+++++|..
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR-ENPQVNLSLDMSLNPI 193 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH-HCTTCCCEEECTTCCC
T ss_pred ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh-ccccccceeeccCCCc
Confidence 6777888888888888888875 5677888888888888888888876666665521 1111 22455666653
No 49
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.2e-16 Score=140.97 Aligned_cols=137 Identities=25% Similarity=0.198 Sum_probs=117.8
Q ss_pred CCeeEEEeeCCCCcccCCccCC-CCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 71 GRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
..++.|+|++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|+++...+..|..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3578999999999977677777 899999999999999977777899999999999999999977777899999999999
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
+++|++++..|..|..+++|++|++++|.++ .+|..+......++.++.+++++|...
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9999999888899999999999999999999 466654321234788999999999753
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.6e-17 Score=160.07 Aligned_cols=144 Identities=22% Similarity=0.267 Sum_probs=122.9
Q ss_pred CCCCCCCCCCeeecCCCeeEEEeeCCCCcc-----------------cCCccCC--CCCCCCEEEccCCCCCCCCCCCcc
Q 024203 56 CNGFTSYLPGATCNNGRIYKLSLTNLSLQG-----------------SISPYLS--NCTNLQSLDLSSNALTGSIPADLQ 116 (271)
Q Consensus 56 c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~ 116 (271)
+|.+.+ +|..+.++++|++|+|++|.+++ .+|+.++ ++++|++|+|++|.+.+.+|..+.
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 455555 78888899999999999999998 3899988 999999999999999999999999
Q ss_pred CCcccceeeccccc-CCC-CCchhhhcCc-------cCCeeeccCCcCCCCCch--hccCCCCCCEEEccCCCCCCCCCh
Q 024203 117 YLVNLAVLNLSANR-LAG-EIPPQLTLCA-------YLNVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIPA 185 (271)
Q Consensus 117 ~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~ 185 (271)
.+++|+.|++++|+ +++ .+|..++.++ +|+.|++++|+++ .+|. .+..+++|+.|++++|.++ .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 99999999999998 988 7888887776 8999999999999 8888 8899999999999999988 788
Q ss_pred hhhccCCCCCCccCCCCcCCCC
Q 024203 186 SLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 186 ~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
.+.. +++++.+++++|..
T Consensus 590 ~~~~----L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 590 AFGT----NVKLTDLKLDYNQI 607 (876)
T ss_dssp CCCT----TSEESEEECCSSCC
T ss_pred hhcC----CCcceEEECcCCcc
Confidence 5544 55566666666553
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.9e-16 Score=134.35 Aligned_cols=150 Identities=18% Similarity=0.167 Sum_probs=113.9
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 117 (276)
T 2z62_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (276)
T ss_dssp CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCc
Confidence 33433334456677888999999998886666678888899999999998887777788888899999999998886666
Q ss_pred hhhhcCccCCeeeccCCcCCC-CCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCcc-CCCCcCCCC
Q 024203 137 PQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN-ASSFEGNKD 207 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~-~~~~~~N~~ 207 (271)
..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..+..+..+ ..++.+. .+++++|..
T Consensus 118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCC
T ss_pred hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcc
Confidence 678888899999999999886 368888888999999999999886666666551 1133222 566777764
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.1e-16 Score=137.77 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=106.4
Q ss_pred CeeecCCCeeEEEeeCCCCcccCC-ccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCC-CCchhhhcC
Q 024203 65 GATCNNGRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EIPPQLTLC 142 (271)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l 142 (271)
..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 345556777777777777764433 467777888888888888877777777778888888888888875 467777888
Q ss_pred ccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCC
Q 024203 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY 209 (271)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c 209 (271)
++|++|++++|++++..|..+..+++|++|++++|.+++..+..+.. +++++.+++++|....
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC----LNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT----CTTCCEEECTTSCCCB
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC----cccCCEeECCCCCCcc
Confidence 88888888888888777778888888888888888888655555544 7788888888887544
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=144.85 Aligned_cols=133 Identities=19% Similarity=0.138 Sum_probs=102.0
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....+..+.++++|++|+|++|.+.+..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 44444445566778888888888888887778888888888888888888885555567788888888888888887777
Q ss_pred hhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhc
Q 024203 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 189 (271)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.+
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence 78888888888888888888777777888888888888888887544444443
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=7e-17 Score=147.31 Aligned_cols=142 Identities=21% Similarity=0.155 Sum_probs=99.7
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCC------------------------CCCEEEccCCCCCCCCCCCccCCcccc
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCT------------------------NLQSLDLSSNALTGSIPADLQYLVNLA 122 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 122 (271)
+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 44455566666666655544444444444 555555555666632224566777888
Q ss_pred eeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCC
Q 024203 123 VLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSF 202 (271)
Q Consensus 123 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~ 202 (271)
.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+.. +++++.+++
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l 327 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS----VGNLETLIL 327 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC----GGGCCEEEC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC----CcccCEEEc
Confidence 8888888887666667778888888888888888777888888888888888888888544444444 678888999
Q ss_pred cCCCCCCCCC
Q 024203 203 EGNKDLYGYP 212 (271)
Q Consensus 203 ~~N~~~c~~~ 212 (271)
++|++.|.|+
T Consensus 328 ~~N~l~c~c~ 337 (477)
T 2id5_A 328 DSNPLACDCR 337 (477)
T ss_dssp CSSCEECSGG
T ss_pred cCCCccCccc
Confidence 9999998865
No 55
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.6e-16 Score=127.09 Aligned_cols=130 Identities=21% Similarity=0.252 Sum_probs=95.7
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+..+++|++|++++|.+. .++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 456677888888888655 234677788888888888888766677777888888888888888766777777888888
Q ss_pred eeeccCCc-CCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 147 VIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 147 ~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
+|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+.. +++++.+++++|+
T Consensus 140 ~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~----l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIED----FPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGG----CSSCCEEEECBC-
T ss_pred EEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhcc----CCCCCEEEeeCcc
Confidence 88888887 54 565 57777888888888888874 44 4444 6777777777776
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=8.3e-17 Score=146.08 Aligned_cols=77 Identities=21% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCC
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 133 (271)
|.+....+..+.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.++.
T Consensus 85 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 33443344556667777777777777776666677777777777777777775555556667777777777776663
No 57
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=5.5e-16 Score=122.93 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=101.5
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 68999999999999666667899999999999999999666666889999999999999999777777899999999999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 184 (271)
++|++++..+..+..+++|++|++++|++.+..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999996655667889999999999999998765
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.1e-17 Score=146.97 Aligned_cols=121 Identities=21% Similarity=0.187 Sum_probs=58.2
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCch--hhhcCcc
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAY 144 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~ 144 (271)
+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++. +|. .+..+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCC
Confidence 3444555555555555554444445555555555555555552222224445555555555555542 222 4444555
Q ss_pred CCeeeccCCc-CCCCCchhccCCCCCCEEEccCCCCCCCCChhhh
Q 024203 145 LNVIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188 (271)
Q Consensus 145 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~ 188 (271)
|++|++++|+ +++..|..+..+++|++|++++|.+++..|..+.
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 5555555542 3333334445555555555555555544444443
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=7e-17 Score=146.11 Aligned_cols=145 Identities=23% Similarity=0.208 Sum_probs=90.0
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....+..+.++++|++|+|++|.+.+..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.++...+
T Consensus 74 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 153 (440)
T 3zyj_A 74 NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153 (440)
T ss_dssp CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH
Confidence 34443344556667788888888888876666677778888888888888875555567777778888888777765444
Q ss_pred hhhhcCccCCeeec-------------------------cCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccC
Q 024203 137 PQLTLCAYLNVIDL-------------------------HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191 (271)
Q Consensus 137 ~~~~~l~~L~~L~L-------------------------s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~ 191 (271)
..+..+++|++|++ ++|+++ .+|. +..+++|+.|++++|.+++..|..+.+
T Consensus 154 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 229 (440)
T 3zyj_A 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG-- 229 (440)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTT--
T ss_pred HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhcc--
Confidence 44444444444444 444444 3332 444555555555555555544555444
Q ss_pred CCCCCccCCCCcCCCC
Q 024203 192 GNLPKFNASSFEGNKD 207 (271)
Q Consensus 192 ~~l~~l~~~~~~~N~~ 207 (271)
+++++.+++++|..
T Consensus 230 --l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 230 --LMHLQKLWMIQSQI 243 (440)
T ss_dssp --CTTCCEEECTTCCC
T ss_pred --CccCCEEECCCCce
Confidence 55666666666643
No 60
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=125.19 Aligned_cols=111 Identities=24% Similarity=0.241 Sum_probs=102.4
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
+++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57999999999998 78899999999999999999999877788999999999999999999888888999999999999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEccCCCCCCC
Q 024203 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (271)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (271)
++|++++..+..|..+++|+.|++++|++...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999966666789999999999999998754
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=3.2e-16 Score=145.16 Aligned_cols=133 Identities=20% Similarity=0.168 Sum_probs=101.2
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
+++++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++++|.+++..|..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57888888888888767777888888888888888888777777888888888888888888766666888888888888
Q ss_pred cCCcCCC-CCchhccCCCCCCEEEccCCCCCCCCC-hhhhccCCCCCCccCCCCcCCCC
Q 024203 151 HDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 151 s~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+.+ +++++.+++++|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~----l~~L~~L~L~~n~l 160 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG----LTSLNELEIKALSL 160 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT----CCEEEEEEEEETTC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc----ccccCeeeccCCcc
Confidence 8888875 356677888888888888887544555 34544 56666666666653
No 62
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=3.6e-16 Score=146.53 Aligned_cols=148 Identities=16% Similarity=0.037 Sum_probs=113.7
Q ss_pred CCCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC
Q 024203 56 CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (271)
Q Consensus 56 c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 135 (271)
.|.+....+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 45555555667777888888888888888777888888888888888888888777888888888888888888888655
Q ss_pred chhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCcc--CCCCcCCCC
Q 024203 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN--ASSFEGNKD 207 (271)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~--~~~~~~N~~ 207 (271)
|..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..|..+.. ++.++ .+++++|..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS----LQQATNLSLNLNGNDI 191 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT----TTTCCSEEEECTTCCC
T ss_pred cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh----hcccceeEEecCCCcc
Confidence 677888888888888888888633233445888888888888888766776766 55555 566777764
No 63
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=6e-16 Score=122.71 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=109.4
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCC-CCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCcc
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNC-TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (271)
.+.+..+++.|++++|.+. .+|. +..+ ++|++|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3456778999999999999 4554 4444 4999999999999954 68889999999999999999655555689999
Q ss_pred CCeeeccCCcCCCCCch--hccCCCCCCEEEccCCCCCCCCChh----hhccCCCCCCccCCCCcCCC
Q 024203 145 LNVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIPAS----LGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 145 L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~ip~~----~~~~~~~l~~l~~~~~~~N~ 206 (271)
|++|++++|+++ .+|. .+..+++|++|++++|+++ .+|.. +.. ++.++.+++++|+
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~----l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYK----VPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHH----CTTCSEETTEECC
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHH----CCccceeCCCcCC
Confidence 999999999997 6776 7889999999999999998 56764 555 7788888888775
No 64
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=4e-16 Score=141.22 Aligned_cols=127 Identities=20% Similarity=0.134 Sum_probs=115.3
Q ss_pred CCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCch
Q 024203 58 GFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP 137 (271)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 137 (271)
.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|.
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 34444566677889999999999999988888999999999999999999977788899999999999999999988899
Q ss_pred hhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCC
Q 024203 138 QLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (271)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 184 (271)
.+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999999997666678999999999999999999888
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=6e-16 Score=145.27 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=72.6
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
.+++|++|++++|.+.+..|..+..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..|+.+++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 34566666666666665555566666666666666666665555556666666666666666664433445666666666
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 181 (271)
++++|.+++..|..+..+++|++|++++|.+++
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 666666666666666666666666666666664
No 66
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=1.8e-15 Score=119.47 Aligned_cols=108 Identities=23% Similarity=0.193 Sum_probs=96.2
Q ss_pred eEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCC
Q 024203 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153 (271)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 153 (271)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 68999999998 5787664 89999999999999888888999999999999999999777777899999999999999
Q ss_pred cCCCCCchhccCCCCCCEEEccCCCCCCCCC
Q 024203 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (271)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip 184 (271)
++++..+..+..+++|++|++++|++++..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997666679999999999999999986543
No 67
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=6.7e-16 Score=121.33 Aligned_cols=123 Identities=28% Similarity=0.286 Sum_probs=106.9
Q ss_pred CCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC-chhh
Q 024203 61 SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI-PPQL 139 (271)
Q Consensus 61 ~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~ 139 (271)
+.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.. +..+
T Consensus 39 ~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l 116 (168)
T 2ell_A 39 GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116 (168)
T ss_dssp TBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred hhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH
Confidence 35777778899999999999999965 78899999999999999999778877778999999999999999532 2788
Q ss_pred hcCccCCeeeccCCcCCCCCc---hhccCCCCCCEEEccCCCCCCCCChh
Q 024203 140 TLCAYLNVIDLHDNLLTGQIP---QQLGLLVRLSAFDVSNNKLSGPIPAS 186 (271)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~g~ip~~ 186 (271)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|.+
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 999999999999999996554 47899999999999999987 56653
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=143.46 Aligned_cols=133 Identities=18% Similarity=0.167 Sum_probs=91.2
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 117 (570)
T 2z63_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (570)
T ss_dssp CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCC
Confidence 33333334455666777777777777776556667777777777777777776556677777777777777777775444
Q ss_pred hhhhcCccCCeeeccCCcCCC-CCchhccCCCCCCEEEccCCCCCCCCChhhhc
Q 024203 137 PQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 189 (271)
..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 457777777777777777775 35777777777777777777777655555554
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=1.9e-16 Score=136.88 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=38.6
Q ss_pred ecCCCeeEEEeeCCCCcccCCccCCCC-----CCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCC--Cchhh-
Q 024203 68 CNNGRIYKLSLTNLSLQGSISPYLSNC-----TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE--IPPQL- 139 (271)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~- 139 (271)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..+..+++|++|++++|++.+. .|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 3444445555555544433 3333333 4444444444444444444444444444444444444332 12222
Q ss_pred -hcCccCCeeeccCCcCC
Q 024203 140 -TLCAYLNVIDLHDNLLT 156 (271)
Q Consensus 140 -~~l~~L~~L~Ls~N~l~ 156 (271)
..+++|++|++++|+++
T Consensus 197 ~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGME 214 (312)
T ss_dssp TTSCTTCCEEECTTSCCC
T ss_pred hccCCCCCEEECCCCcCc
Confidence 34444444444444444
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=148.27 Aligned_cols=149 Identities=21% Similarity=0.154 Sum_probs=110.1
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccC-CccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCC
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSI-SPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 135 (271)
|.+....+..+.++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|..|..+++|++|++++|.+++.+
T Consensus 34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 4454445666777888888888888655555 667888888888888888888777888888888888888888888766
Q ss_pred chh--hhcCccCCeeeccCCcCCCCCc-hhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 136 PPQ--LTLCAYLNVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 136 p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
|.. +.++++|++|++++|.+++..| ..++++++|++|++++|.+++..|..+..+.. ++++.+++++|..
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l 186 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSL 186 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBS
T ss_pred ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcc
Confidence 655 7788888888888888876544 56788888888888888888777777665210 4455555555543
No 71
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=1.6e-15 Score=119.78 Aligned_cols=109 Identities=21% Similarity=0.238 Sum_probs=96.3
Q ss_pred CCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEcc
Q 024203 96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (271)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (271)
..+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999999 6887764 899999999999998888999999999999999999997777778999999999999
Q ss_pred CCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCC
Q 024203 176 NNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (271)
Q Consensus 176 ~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (271)
+|++++..+..+.. +++++.+++++|++.|.+
T Consensus 87 ~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDN----LKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTT----CTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcC----CCCCCEEEeCCCCCCCCc
Confidence 99999655555666 788999999999999975
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=2.4e-16 Score=136.33 Aligned_cols=137 Identities=20% Similarity=0.222 Sum_probs=113.8
Q ss_pred cCCCeeEEEeeCCCCcccCCccC--CCCCCCCEEEccCCCCCCCCCCCccCC-----cccceeecccccCCCCCchhhhc
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYL--SNCTNLQSLDLSSNALTGSIPADLQYL-----VNLAVLNLSANRLAGEIPPQLTL 141 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~ 141 (271)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 47899999999999999899876 8999999999999999966 8777777 89999999999999888899999
Q ss_pred CccCCeeeccCCcCCCC--Cchhc--cCCCCCCEEEccCCCCCC--CCChhhhccCCCCCCccCCCCcCCCCCC
Q 024203 142 CAYLNVIDLHDNLLTGQ--IPQQL--GLLVRLSAFDVSNNKLSG--PIPASLGNRSGNLPKFNASSFEGNKDLY 209 (271)
Q Consensus 142 l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~l~~N~l~g--~ip~~~~~~~~~l~~l~~~~~~~N~~~c 209 (271)
+++|++|++++|++.+. +|..+ ..+++|++|++++|.+++ .++..+.. .+++++.+++++|....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA---ARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH---TTCCCSEEECTTSCCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh---cCCCCCEEECCCCcCCc
Confidence 99999999999998865 34444 888999999999999983 22323221 26677788888887543
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=2.4e-15 Score=130.71 Aligned_cols=114 Identities=21% Similarity=0.208 Sum_probs=58.4
Q ss_pred eecCCCeeEEEeeCCCCcc--cCCccCCCCCCCCEEEccCCCC---------------------CCCCCCCccCCcccce
Q 024203 67 TCNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNAL---------------------TGSIPADLQYLVNLAV 123 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l---------------------~~~~p~~~~~l~~L~~ 123 (271)
+.++++++.|++++|.+.. ..+..+..+++|++|++++|.+ ++..|..+..+++|++
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 3445555555555555532 3344444555555555555544 4444444455555555
Q ss_pred eecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCC
Q 024203 124 LNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181 (271)
Q Consensus 124 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 181 (271)
|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 555555555444444555555555555555555 445555555555555555555553
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=6.4e-16 Score=124.79 Aligned_cols=130 Identities=17% Similarity=0.280 Sum_probs=114.7
Q ss_pred ecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCe
Q 024203 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (271)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (271)
..++++++|++++|.+. .+| .+..+++|++|++++|.++ .++.+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678999999999999 666 6889999999999999776 3447889999999999999999878888999999999
Q ss_pred eeccCCcCCCCCchhccCCCCCCEEEccCCC-CCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
|++++|++++..|..+..+++|++|++++|. ++ .+| .+.. ++.++.+++++|..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~----l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKT----LPELKSLNIQFDGV 171 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGG----CSSCCEEECTTBCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcC----CCCCCEEECCCCCC
Confidence 9999999998889999999999999999998 65 666 4555 78899999999874
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=1.1e-15 Score=145.33 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=112.6
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCc
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
|.+....+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence 44444444556777888888888888887777778888888888888888884444468888888888888888886666
Q ss_pred hhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
..++++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+... ..+.++.+++++|..
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF--ANSSLKKLELSSNQI 183 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG--TTCEESEEECTTCCC
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc--ccccccEEECCCCcc
Confidence 778888888888888888887777778888888888888888886666555431 145677778877754
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=2.2e-16 Score=146.21 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=125.2
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCC-CC
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EI 135 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~ 135 (271)
|.+....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..
T Consensus 36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence 44555556677889999999999999998888889999999999999999997777679999999999999999986 35
Q ss_pred chhhhcCccCCeeeccCCcCCCCCc-hhccCCCCCCEEEccCCCCCCCCChhhhccC--------------------CCC
Q 024203 136 PPQLTLCAYLNVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPASLGNRS--------------------GNL 194 (271)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~--------------------~~l 194 (271)
|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++.+|..+..+. ..+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 195 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHST
T ss_pred hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhc
Confidence 6788999999999999998555665 6789999999999999999988888776531 125
Q ss_pred CCccCCCCcCCCC
Q 024203 195 PKFNASSFEGNKD 207 (271)
Q Consensus 195 ~~l~~~~~~~N~~ 207 (271)
++++.+++++|..
T Consensus 196 ~~L~~L~L~~n~l 208 (549)
T 2z81_A 196 SSVRYLELRDTNL 208 (549)
T ss_dssp TTBSEEEEESCBC
T ss_pred ccccEEEccCCcc
Confidence 5666777777764
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=2.8e-15 Score=140.67 Aligned_cols=92 Identities=22% Similarity=0.128 Sum_probs=48.7
Q ss_pred CeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCcc
Q 024203 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (271)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (271)
..++.+++|++|+|++|.+.+..|..|+.+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++
T Consensus 93 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 34445555555555555555544444555555555555555555333333455555555555555555544545555555
Q ss_pred CCeeeccCCcCC
Q 024203 145 LNVIDLHDNLLT 156 (271)
Q Consensus 145 L~~L~Ls~N~l~ 156 (271)
|++|++++|.++
T Consensus 173 L~~L~L~~N~l~ 184 (597)
T 3oja_B 173 LQNLQLSSNRLT 184 (597)
T ss_dssp CCEEECTTSCCS
T ss_pred CcEEECcCCCCC
Confidence 555555555444
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=1.6e-15 Score=131.83 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=91.8
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCC--CCCCCccCCcccceeecccccCC----------------
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSANRLA---------------- 132 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~---------------- 132 (271)
+++++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 200 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECT
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECC
Confidence 689999999999997667778999999999999999963 55666777766666666666554
Q ss_pred -----CCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 133 -----GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 133 -----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.. ++.++.+++++|+.
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~----l~~L~~L~l~~N~i 275 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD----HKYIQVVYLHNNNI 275 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT----CSSCCEEECCSSCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc----CCCcCEEECCCCcC
Confidence 333445555666666666666666555555666666666666666666 55555544 55666666666654
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=1.2e-15 Score=135.67 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=80.9
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 34566777777777777755556677777777777777777766666677777777777777777733333356777777
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccCCCCCC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 181 (271)
+|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 77777777776666667777777777777777764
No 80
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=5.1e-15 Score=117.37 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=94.1
Q ss_pred eEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCC
Q 024203 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153 (271)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 153 (271)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 68999999997 7887665 89999999999999888889999999999999999999765666789999999999999
Q ss_pred cCCCCCchhccCCCCCCEEEccCCCCCCC
Q 024203 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (271)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (271)
++++..+..+..+++|++|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99965556689999999999999999844
No 81
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=5e-16 Score=148.94 Aligned_cols=123 Identities=32% Similarity=0.458 Sum_probs=107.4
Q ss_pred CCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcC
Q 024203 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (271)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (271)
.++.+..+.+|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4566777889999999999998 78888889999999999999999 88999999999999999999999 789999999
Q ss_pred ccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhc
Q 024203 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (271)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 189 (271)
++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|++.+|..+..
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 99999999999998 88888999999999999999999888877654
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=147.04 Aligned_cols=136 Identities=20% Similarity=0.189 Sum_probs=121.6
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCC-CCCccCCcccceeecccccCCCCCchhhhcCccCCe
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI-PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (271)
-.+++++|+|++|.+++..|..|.++++|++|++++|...+.+ |..|..+++|++|+|++|.+++..|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999999888999999999999999999776666 778999999999999999999888999999999999
Q ss_pred eeccCCcCCCCCchh--ccCCCCCCEEEccCCCCCCCCC-hhhhccCCCCCCccCCCCcCCCCC
Q 024203 148 IDLHDNLLTGQIPQQ--LGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 148 L~Ls~N~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
|++++|.+++.+|.. +..+++|++|++++|.+++..| ..+.+ +++|+.+++++|...
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~----L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK----LNSLKSIDFSSNQIF 161 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT----CSSCCEEEEESSCCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh----CCCCCEEECCCCcCC
Confidence 999999999877765 8999999999999999987655 45666 888999999998753
No 83
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=4.9e-15 Score=131.73 Aligned_cols=91 Identities=22% Similarity=0.144 Sum_probs=43.4
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 33444555555555555554444444555555555555555552222223445555555555555554444444444444
Q ss_pred CeeeccCCcCC
Q 024203 146 NVIDLHDNLLT 156 (271)
Q Consensus 146 ~~L~Ls~N~l~ 156 (271)
++|++++|+++
T Consensus 168 ~~L~l~~n~l~ 178 (390)
T 3o6n_A 168 QNLQLSSNRLT 178 (390)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECCCCcCC
Confidence 44444444443
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.9e-16 Score=144.08 Aligned_cols=133 Identities=22% Similarity=0.124 Sum_probs=81.7
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCcc-CCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence 34555566666666555555566666666666666666655555554 456666666666666643 22 2246667777
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (271)
++++|.+++. |..+..+++|+.|++++|.+++ +|..+.. ++.+..+++++|++.|+
T Consensus 197 ~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~----l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRF----SQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCC----CTTCCEEECTTCCBCHH
T ss_pred ECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhcc----CCCCCEEEcCCCCCcCc
Confidence 7777777643 3346667777777777777773 5655444 56677777777777754
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=8e-16 Score=127.80 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=52.1
Q ss_pred eecCCCeeEEEeeCCC-CcccCCccCCCCCCCCEEEccC-CCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCcc
Q 024203 67 TCNNGRIYKLSLTNLS-LQGSISPYLSNCTNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (271)
+.++++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..+++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc
Confidence 3344455555555554 4433333444455555555554 55543333344445555555555555442 333 444444
Q ss_pred CC---eeeccCC-cCCCCCchhccCCCCCC-EEEccCCCCC
Q 024203 145 LN---VIDLHDN-LLTGQIPQQLGLLVRLS-AFDVSNNKLS 180 (271)
Q Consensus 145 L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~l~~N~l~ 180 (271)
|+ +|++++| ++++..+..|..+++|+ +|++++|.++
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 44 4445444 44433333344445555 5555555544
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=4.7e-15 Score=129.09 Aligned_cols=112 Identities=21% Similarity=0.173 Sum_probs=52.4
Q ss_pred CCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEcc
Q 024203 96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (271)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (271)
+|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 3444444444444333344445555555555555555444444555555555555555555 445445555555555555
Q ss_pred CCCCCCCCChhhhccC--CCCCCccCCCCcCCCCC
Q 024203 176 NNKLSGPIPASLGNRS--GNLPKFNASSFEGNKDL 208 (271)
Q Consensus 176 ~N~l~g~ip~~~~~~~--~~l~~l~~~~~~~N~~~ 208 (271)
+|++++..+..+.... ...+.+..+++.+|++.
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCccChhHccccccccccccccceEeecCccc
Confidence 5555533333332211 01233444555555543
No 87
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=5e-15 Score=117.44 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=94.1
Q ss_pred CEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCC
Q 024203 98 QSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (271)
Q Consensus 98 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (271)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 78999999997 8888764 89999999999999888999999999999999999999665566789999999999999
Q ss_pred CCCCCCChhhhccCCCCCCccCCCCcCCCCCCCC
Q 024203 178 KLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (271)
Q Consensus 178 ~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (271)
++++..+..+.. +++++.+++++|++.|.+
T Consensus 92 ~l~~l~~~~~~~----l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDN----LKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTT----CTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhcc----ccCCCEEEeCCCCccccc
Confidence 999554444665 888999999999998865
No 88
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=132.17 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=112.9
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
+++++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 48999999999999766668999999999999999999877888999999999999999999655555899999999999
Q ss_pred cCCcCCCCCch--hccCCCCCCEEEccCCC-CCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 151 HDNLLTGQIPQ--QLGLLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 151 s~N~l~~~~p~--~~~~l~~L~~L~l~~N~-l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
++|+++ .+|. .+..+++|++|++++|+ +.+..|..+.+ ++.++.+++++|..
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----l~~L~~L~l~~n~l 186 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG----LTFLEELEIDASDL 186 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT----CCEEEEEEEEETTC
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccC----CCCCCEEECCCCCc
Confidence 999999 5554 78999999999999995 66555666665 66777777777764
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=2.5e-15 Score=124.79 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=113.2
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCC-CCCCCCCCccCCcccceeeccc-ccCCCCCchhhhcCccCCee
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA-LTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L 148 (271)
.++++|++++|.+++..+..+..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999997666689999999999999997 8855566899999999999999 99997666788999999999
Q ss_pred eccCCcCCCCCchhccCCCCCC---EEEccCC-CCCCCCChhhhccCCCCCCcc-CCCCcCCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLS---AFDVSNN-KLSGPIPASLGNRSGNLPKFN-ASSFEGNKDL 208 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~---~L~l~~N-~l~g~ip~~~~~~~~~l~~l~-~~~~~~N~~~ 208 (271)
++++|++++ +|. +..+++|+ +|++++| .+++..+..+.+ ++.++ .+++++|...
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~----l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG----LCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT----TBSSEEEEECCSCCCC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc----hhcceeEEEcCCCCCc
Confidence 999999995 776 88889998 9999999 998555555655 77788 8888887643
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.3e-15 Score=142.08 Aligned_cols=108 Identities=27% Similarity=0.263 Sum_probs=90.1
Q ss_pred CeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeecc
Q 024203 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 151 (271)
.++.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47788888888884 665 888888888888888888 788888888888888888888885 66 78888888888888
Q ss_pred CCcCCCCC-chhccCCCCCCEEEccCCCCCCCCC
Q 024203 152 DNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIP 184 (271)
Q Consensus 152 ~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~ip 184 (271)
+|++++.. |..++.+++|+.|++++|++++..|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 88888766 8888888888888888888886544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=131.87 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=96.7
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCC--C--CCCccCCcccceeecccccCCCCCch----hhh
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS--I--PADLQYLVNLAVLNLSANRLAGEIPP----QLT 140 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~ 140 (271)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 467788888888888766677788888888888888887542 2 223356778888888888886 3343 246
Q ss_pred cCccCCeeeccCCcCCCCCchhccCC---CCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 141 LCAYLNVIDLHDNLLTGQIPQQLGLL---VRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
.+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++++.+++++|...
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~------~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP------AKLRVLDLSSNRLN 285 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC------SCCSCEECCSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc------CCCCEEECCCCcCC
Confidence 77888888888888887777776666 58888888888888 6776542 46777788888643
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=8.4e-16 Score=133.17 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=54.1
Q ss_pred CCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhh-hcCccCCeeeccCCcCCCCCchhccCCCCCCEE
Q 024203 94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQL-TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAF 172 (271)
Q Consensus 94 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 172 (271)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. |. ...+++|++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence 4556666666666665444455555666666666666654444444 2455555555555555522 22 2234555555
Q ss_pred EccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 173 DVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 173 ~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
++++|.+++ +|..+.. +++++.+++++|.
T Consensus 197 ~Ls~N~l~~-l~~~~~~----l~~L~~L~L~~N~ 225 (317)
T 3o53_A 197 DLSSNKLAF-MGPEFQS----AAGVTWISLRNNK 225 (317)
T ss_dssp ECCSSCCCE-ECGGGGG----GTTCSEEECTTSC
T ss_pred ECCCCcCCc-chhhhcc----cCcccEEECcCCc
Confidence 555555552 3333333 3444444444443
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=1.1e-14 Score=126.73 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=45.3
Q ss_pred CeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeecc
Q 024203 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 151 (271)
++++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 3444444444444333334444444444444444444333444444444444444444444 3333222 344444444
Q ss_pred CCcCCCCCchhccCCCCCCEEEccCCCC
Q 024203 152 DNLLTGQIPQQLGLLVRLSAFDVSNNKL 179 (271)
Q Consensus 152 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l 179 (271)
+|++++..+..+..+++|++|++++|.+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCcc
Confidence 4444432223334444444444444443
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=137.39 Aligned_cols=134 Identities=21% Similarity=0.258 Sum_probs=108.7
Q ss_pred ecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCC--CCCCCccCCcccceeecccccCCCCCchh-hhcCcc
Q 024203 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAY 144 (271)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 144 (271)
..++++++|++++|.+.+.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456788888888888887788888888888888888888885 45566778888888888888888656654 677888
Q ss_pred CCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+.. ++.++.+++++|...
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~----l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK----LEALQELNVASNQLK 457 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG----CTTCCEEECCSSCCC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc----CCCCCEEECCCCcCC
Confidence 88888888888877776654 68899999999998 78887776 788889999999754
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2e-15 Score=116.24 Aligned_cols=114 Identities=26% Similarity=0.274 Sum_probs=100.0
Q ss_pred CCCCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCC-Cchhh
Q 024203 61 SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE-IPPQL 139 (271)
Q Consensus 61 ~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~ 139 (271)
+.+|..++.++++++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+
T Consensus 32 ~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 32 GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp TBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred hHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH
Confidence 35677778899999999999999965 7789999999999999999977888888899999999999999953 34789
Q ss_pred hcCccCCeeeccCCcCCCCCc---hhccCCCCCCEEEccC
Q 024203 140 TLCAYLNVIDLHDNLLTGQIP---QQLGLLVRLSAFDVSN 176 (271)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~ 176 (271)
..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999999999996655 5788999999999864
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=9.7e-16 Score=140.55 Aligned_cols=150 Identities=21% Similarity=0.236 Sum_probs=122.4
Q ss_pred CCCCCCCCCCeeecCCCeeEEEeeCCCCcccCCccCC-CCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCC
Q 024203 56 CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134 (271)
Q Consensus 56 c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 134 (271)
.|.+.+..+..+..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++. | .+..+++|++|++++|.+++
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~- 205 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF- 205 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-
Confidence 3445555566677889999999999999988888776 799999999999999955 3 33468999999999999996
Q ss_pred CchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCC-CCCChhhhccCCCCCCccCCCCc-------CCC
Q 024203 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS-GPIPASLGNRSGNLPKFNASSFE-------GNK 206 (271)
Q Consensus 135 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-g~ip~~~~~~~~~l~~l~~~~~~-------~N~ 206 (271)
+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+.. ++.+..+++. .|+
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~----l~~L~~l~~~~~~~~~~~~~ 280 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK----NQRVQTVAKQTVKKLTGQNE 280 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT----CHHHHHHHHHHHHHHTSSSS
T ss_pred CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh----CCCCcEEeccccccccCCCc
Confidence 5556899999999999999999 57888999999999999999998 566666655 5555555554 788
Q ss_pred CCCCCCC
Q 024203 207 DLYGYPL 213 (271)
Q Consensus 207 ~~c~~~~ 213 (271)
+.|.++.
T Consensus 281 ~~c~~~~ 287 (487)
T 3oja_A 281 EECTVPT 287 (487)
T ss_dssp CCCSSTT
T ss_pred ccccCCc
Confidence 8887653
No 97
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=6.2e-15 Score=141.33 Aligned_cols=115 Identities=29% Similarity=0.353 Sum_probs=101.2
Q ss_pred cCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccC
Q 024203 86 SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL 165 (271)
Q Consensus 86 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 165 (271)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|+|+ .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34677888999999999999999 88888889999999999999999 89999999999999999999999 88999999
Q ss_pred CCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 166 LVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 166 l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
+++|++|+|++|.|+ .+|..+.+ +++|+.+++++|+..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~----l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGN----LCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTS----CTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhc----CCCccEEeCCCCccC
Confidence 999999999999998 88988776 788999999999864
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=7.8e-15 Score=126.59 Aligned_cols=148 Identities=16% Similarity=0.074 Sum_probs=114.3
Q ss_pred CCCCCCCee--ecCCCeeEEEeeCCCCcccCC----ccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCC
Q 024203 59 FTSYLPGAT--CNNGRIYKLSLTNLSLQGSIS----PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132 (271)
Q Consensus 59 ~~~~~~~~~--~~~~~l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 132 (271)
+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 103 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 103 ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence 344455555 678889999999999987554 34557889999999999998787888999999999999999886
Q ss_pred CC--Cc--hhhhcCccCCeeeccCCcCCCCCch----hccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcC
Q 024203 133 GE--IP--PQLTLCAYLNVIDLHDNLLTGQIPQ----QLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG 204 (271)
Q Consensus 133 ~~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~ 204 (271)
+. ++ ..+..+++|++|++++|+++ .+|. .+..+++|++|++++|.+++..|..+..+. .+++++.+++++
T Consensus 183 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~~~L~~L~Ls~ 260 (310)
T 4glp_A 183 GERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM-WSSALNSLNLSF 260 (310)
T ss_dssp HHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC-CCTTCCCEECCS
T ss_pred cchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc-CcCcCCEEECCC
Confidence 42 22 23367889999999999997 4443 256788999999999999987788777632 136788888888
Q ss_pred CCCC
Q 024203 205 NKDL 208 (271)
Q Consensus 205 N~~~ 208 (271)
|...
T Consensus 261 N~l~ 264 (310)
T 4glp_A 261 AGLE 264 (310)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.55 E-value=3.1e-14 Score=124.37 Aligned_cols=126 Identities=27% Similarity=0.434 Sum_probs=58.2
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
.++++++|++++|.+.+ ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ + ..+..+++|+.|
T Consensus 219 ~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L 292 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL 292 (347)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred cCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence 34444445555544442 222 4444555555555554442 2 234444555555555555542 2 234444555555
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
++++|.+++..|..+..+++|++|++++|++++..| +.. ++.++.+++++|+
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~----l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS----LSKMDSADFANQV 344 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG----CTTCSEESSSCC-
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh----hhccceeehhhhc
Confidence 555555554444445555555555555555543332 222 4444445555543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=2.3e-14 Score=122.76 Aligned_cols=124 Identities=26% Similarity=0.359 Sum_probs=60.2
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
.+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++. ..+..+++|+.|
T Consensus 88 ~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 34444444444444442 22 24444555555555555442 2 2344455555555555555432 344555555555
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
++++|++++..| +..+++|++|++++|.+++ +|. +.. +++++.+++++|+
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~----l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAG----LKNLDVLELFSQE 211 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTT----CTTCSEEEEEEEE
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hcc----CCCCCEEECcCCc
Confidence 555555553322 5555555555555555552 332 222 5555556666654
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=1.5e-14 Score=134.70 Aligned_cols=129 Identities=24% Similarity=0.206 Sum_probs=110.7
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
+++++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 68999999999999777789999999999999999999888889999999999999999999 67766 8999999999
Q ss_pred cCCcCCC-CCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 151 HDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 151 s~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
++|++++ .+|..++++++|++|++++|.+++. .+..+ ..+ .++.+++++|..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPV-AHL-HLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGG-TTS-CEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhh-hhc-eeeEEEeecccc
Confidence 9999996 4568999999999999999999853 33331 113 348888888875
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=3.6e-14 Score=121.50 Aligned_cols=128 Identities=27% Similarity=0.328 Sum_probs=109.2
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+..+++|++|++++|.+.+ +++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ + ..+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCC
Confidence 5678999999999999995 444 8999999999999999984 44 48899999999999999985 4 5688999999
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
.|++++|++++. ..+..+++|++|++++|.+++..| +.. ++.++.+++++|...
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~----l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG----LTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT----CTTCCEEECCSSCCC
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC----CCccCEEECCCCcCC
Confidence 999999999954 568899999999999999996544 544 788889999998643
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=2.1e-14 Score=121.27 Aligned_cols=130 Identities=25% Similarity=0.351 Sum_probs=105.8
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.+..+++|++|++++|.+.+ +++ +..+++|++|++++|++++ +|.. .. ++|++|++++|++++ ++ .+..+++|
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L 130 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNL 130 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccc
Confidence 45678899999999999985 444 8899999999999999984 5543 33 899999999999985 44 58899999
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (271)
+.|++++|++++ +| .+..+++|++|++++|++++. ..+.. ++.++.+++++|+..+.
T Consensus 131 ~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~----l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 131 EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTR----LKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTT----CCCCCEEEEEEEEEECC
T ss_pred cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhcc----CCCCCEEeCCCCcccCC
Confidence 999999999995 45 588899999999999999865 44444 77888888999886554
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=8.3e-14 Score=120.18 Aligned_cols=106 Identities=26% Similarity=0.408 Sum_probs=52.8
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++. +. +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCcc
Confidence 3344555555555555542 22 34455555555555555542 22 244555555555555555532 22 44555555
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccCCCCC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
.|++++|++++ ++. +..+++|+.|++++|.++
T Consensus 155 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 155 YLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred EEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 55555555552 222 455555555555555555
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.53 E-value=4.8e-15 Score=128.36 Aligned_cols=133 Identities=22% Similarity=0.138 Sum_probs=104.5
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCcc-CCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
+++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++. +. ...+++|++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence 57788999999988876677788888899999999988866666653 678889999999988843 33 3347888889
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (271)
++++|++++ +|..+..+++|++|++++|.++ .+|..+.. ++.++.+++++|++.|+
T Consensus 197 ~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~----l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF----SQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC----CTTCCEEECTTCCCBHH
T ss_pred ECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc----CCCCCEEEccCCCccCc
Confidence 999988884 4555888888899999998888 56776654 67788888888888765
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=8.5e-14 Score=120.12 Aligned_cols=128 Identities=25% Similarity=0.385 Sum_probs=106.0
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L 131 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNL 131 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTC
T ss_pred hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCC
Confidence 35678999999999999985 444 8999999999999999984 44 68899999999999999985 454 8899999
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
++|++++|.+++. +. +..+++|++|++++|.+++ ++. +.. +++++.+++++|..
T Consensus 132 ~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~----l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 132 QVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LAN----LSKLTTLKADDNKI 185 (308)
T ss_dssp CEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTT----CTTCCEEECCSSCC
T ss_pred CEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcC----CCCCCEEECCCCcc
Confidence 9999999999954 44 8899999999999999985 444 444 66677777777654
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=8e-14 Score=117.66 Aligned_cols=128 Identities=28% Similarity=0.325 Sum_probs=107.8
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+..++++++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|++++ +|... . ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-Cccc
Confidence 456789999999999998 566 68899999999999999995 444 8999999999999999985 55433 3 8999
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY 209 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c 209 (271)
+|++++|++++ +| .+..+++|+.|++++|++++ +| .+.. +++++.+++++|....
T Consensus 110 ~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~----l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 110 RLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGF----LSKLEVLDLHGNEITN 164 (263)
T ss_dssp EEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGG----CTTCCEEECTTSCCCB
T ss_pred EEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHcc----CCCCCEEECCCCcCcc
Confidence 99999999995 44 58999999999999999995 44 4555 7888999999997644
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.3e-13 Score=129.36 Aligned_cols=126 Identities=25% Similarity=0.347 Sum_probs=79.6
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
++.+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+++ + +.+..+++|+.|+|++|.+++. ..+..+++|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 156 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156 (605)
T ss_dssp GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence 4455566666666666653 22 46666666666666666663 2 3466666777777777777643 4566677777
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
.|+|++|.+++..| +..+++|+.|+|++|++++ +| .+.. +++|+.+++++|+
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~----l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAG----LKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTT----CTTCSEEECCSEE
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHcc----CCCCCEEEccCCc
Confidence 77777777775444 6677777777777777764 33 3333 5666666666665
No 109
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.49 E-value=8.1e-14 Score=121.91 Aligned_cols=105 Identities=24% Similarity=0.196 Sum_probs=91.2
Q ss_pred EEEeeCC-CCcccCCccCCCCCCCCEEEccC-CCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccC
Q 024203 75 KLSLTNL-SLQGSISPYLSNCTNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD 152 (271)
Q Consensus 75 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 152 (271)
.++.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3577777 788 5888 99999999999996 999977778899999999999999999998888999999999999999
Q ss_pred CcCCCCCchhccCCCCCCEEEccCCCCCCC
Q 024203 153 NLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (271)
Q Consensus 153 N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (271)
|+|++..+..+..++ |+.|++.+|++...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999965555565555 99999999999854
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=1.4e-13 Score=129.32 Aligned_cols=128 Identities=26% Similarity=0.299 Sum_probs=110.9
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ + ..+..+++|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 133 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL 133 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTC
T ss_pred HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCcc
Confidence 36778999999999999996443 8899999999999999984 44 78999999999999999995 4 468899999
Q ss_pred CeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
+.|+|++|++++. ..+..+++|+.|+|++|.+++..| +.. ++.|+.+++++|..
T Consensus 134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~----l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG----LTKLQNLYLSKNHI 187 (605)
T ss_dssp SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT----CTTCCEEECCSSCC
T ss_pred CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc----CCCCCEEECcCCCC
Confidence 9999999999954 568999999999999999997655 554 78888999999864
No 111
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=9.3e-14 Score=121.52 Aligned_cols=108 Identities=20% Similarity=0.154 Sum_probs=93.6
Q ss_pred CEEEccCC-CCCCCCCCCccCCcccceeeccc-ccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEcc
Q 024203 98 QSLDLSSN-ALTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (271)
Q Consensus 98 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (271)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688888 898 6888 99999999999996 99998877899999999999999999999889999999999999999
Q ss_pred CCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCCCC
Q 024203 176 NNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (271)
Q Consensus 176 ~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (271)
+|+|++..+..+.. ++ |+.+++.+|++.|.|.
T Consensus 89 ~N~l~~~~~~~~~~----~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQG----LS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCS----CC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHccc----CC-ceEEEeeCCCccCCCc
Confidence 99999544444433 33 8889999999999864
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=5e-16 Score=125.56 Aligned_cols=115 Identities=23% Similarity=0.216 Sum_probs=101.3
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccC
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (271)
.++.++++++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 77889999999999999995 77 8888999999999999999 788877788999999999999995 55 68899999
Q ss_pred CeeeccCCcCCCCCc-hhccCCCCCCEEEccCCCCCCCCCh
Q 024203 146 NVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPA 185 (271)
Q Consensus 146 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~ 185 (271)
++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999999994322 4788999999999999999877664
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=1.9e-13 Score=124.39 Aligned_cols=126 Identities=23% Similarity=0.313 Sum_probs=67.6
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
+++|+.|++++|.+.+. +. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..| +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 34444444444444422 21 4445555555555555543222 4455555555555555554333 45556666666
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY 209 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c 209 (271)
+++|.+++. ..+..+++|+.|++++|++++..| +.. ++.++.+++++|++..
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN----LTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTT----CTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhc----CCCCCEEeccCCcccC
Confidence 666666533 245666666777777776665554 333 5666667777766543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=2.9e-13 Score=126.05 Aligned_cols=76 Identities=28% Similarity=0.375 Sum_probs=39.8
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
.+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 165 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL 165 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence 35667777777777764 555 443 56666666666653 443 34455555555555543 333 23344444
Q ss_pred eccCCcCC
Q 024203 149 DLHDNLLT 156 (271)
Q Consensus 149 ~Ls~N~l~ 156 (271)
++++|+++
T Consensus 166 ~Ls~N~L~ 173 (571)
T 3cvr_A 166 SVRNNQLT 173 (571)
T ss_dssp ECCSSCCS
T ss_pred ECCCCCCC
Confidence 44444444
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.44 E-value=3.8e-13 Score=117.37 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=87.2
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
+++++.|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++|+
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN 271 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence 3444444444444442211 5566777777777777773 333 6677777788888777774 3 4567777888888
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (271)
+++|++++ +| .+..+++|+.|++++|.+++..|..+.. +++++.+++++|+...-
T Consensus 272 l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~----l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 272 VGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGG----LTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHT----CTTCSEEECCSSSCCCC
T ss_pred ccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhc----cccCCEEEccCCccccc
Confidence 88888774 33 4677788888888888888777777766 77788888888875443
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.5e-13 Score=108.77 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=95.9
Q ss_pred CCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCch--hhh
Q 024203 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLT 140 (271)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~ 140 (271)
+++.....+++++|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+.
T Consensus 34 i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~ 110 (176)
T 1a9n_A 34 IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLA 110 (176)
T ss_dssp CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence 344322344999999999999964 67899999999999999999543344588999999999999997 6776 788
Q ss_pred cCccCCeeeccCCcCCCCCchh----ccCCCCCCEEEccCCCCC
Q 024203 141 LCAYLNVIDLHDNLLTGQIPQQ----LGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 180 (271)
.+++|+.|++++|.++ .+|.. +..+++|+.||++.|...
T Consensus 111 ~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999999998 66764 889999999999999875
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.42 E-value=6.2e-13 Score=120.98 Aligned_cols=124 Identities=28% Similarity=0.300 Sum_probs=62.0
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
+++|+.|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 4444444444444443222 44455555555555555532 21 4455555555555555553222 44555555555
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
+++|++++..| +..+++|+.|++++|.+++. ..+.+ +++++.+++++|+.
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~----l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN----LTNINWLSAGHNQI 365 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTT----CTTCCEEECCSSCC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhcc----CCCCCEEeCCCCcc
Confidence 55555554433 44555555666655555532 22332 55566666666654
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=6.2e-13 Score=124.01 Aligned_cols=104 Identities=29% Similarity=0.407 Sum_probs=95.5
Q ss_pred CCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEcc
Q 024203 96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (271)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (271)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|++++ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57899999999994 776 999999999999999999 889999999999999999999995 78 79999999999999
Q ss_pred CCCCCCCC-ChhhhccCCCCCCccCCCCcCCCCC
Q 024203 176 NNKLSGPI-PASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 176 ~N~l~g~i-p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
+|.+++.. |..+.. +++|+.+++++|+..
T Consensus 517 ~N~l~~~~~p~~l~~----l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 517 NNRLQQSAAIQPLVS----CPRLVLLNLQGNSLC 546 (567)
T ss_dssp SSCCCSSSTTGGGGG----CTTCCEEECTTSGGG
T ss_pred CCCCCCCCCcHHHhc----CCCCCEEEecCCcCC
Confidence 99999776 999887 888999999999853
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.1e-15 Score=123.53 Aligned_cols=130 Identities=25% Similarity=0.295 Sum_probs=106.5
Q ss_pred CCeeEEEeeCCCCcccCCc------cCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCcc
Q 024203 71 GRIYKLSLTNLSLQGSISP------YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (271)
.+++.++++++.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 4455555566666655554 88899999999999999995 77 8999999999999999999 78888888899
Q ss_pred CCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCC-hhhhccCCCCCCccCCCCcCCCCCC
Q 024203 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKDLY 209 (271)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip-~~~~~~~~~l~~l~~~~~~~N~~~c 209 (271)
|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+.. +++++.+++++|+..+
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~----l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA----LDKLEDLLLAGNPLYN 154 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTT----TTTCSEEEECSCHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhc----CCCCCEEEecCCcccc
Confidence 9999999999995 56 58889999999999999984322 34554 7889999999987543
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=1.2e-14 Score=126.36 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=73.0
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCC-CCCCC-CCCCccCCcccceeecccc-cCCCC-CchhhhcCc-c
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGS-IPADLQYLVNLAVLNLSAN-RLAGE-IPPQLTLCA-Y 144 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~ 144 (271)
+++|++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 445555555555544444444555555555555555 34421 3333444555555555555 55432 344455556 6
Q ss_pred CCeeeccCC--cCC-CCCchhccCCCCCCEEEccCCC-CCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 145 LNVIDLHDN--LLT-GQIPQQLGLLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 145 L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~l~~N~-l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+.. +++++.+++++|.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----l~~L~~L~l~~~~ 258 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ----LNYLQHLSLSRCY 258 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG----CTTCCEEECTTCT
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC----CCCCCEeeCCCCC
Confidence 666666666 333 3445555566677777777776 55555555554 5666777777765
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=1.1e-14 Score=126.63 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=98.8
Q ss_pred cCCCeeEEEeeCCCCccc-CCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccc-cCCC-CCchhhhcCccC
Q 024203 69 NNGRIYKLSLTNLSLQGS-ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN-RLAG-EIPPQLTLCAYL 145 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~~~~l~~L 145 (271)
.+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 457778888888877654 6666777788888888888777666777777888888888888 5664 256667778888
Q ss_pred CeeeccCC-cCCCC-CchhccCCC-CCCEEEccCC--CCC-CCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 146 NVIDLHDN-LLTGQ-IPQQLGLLV-RLSAFDVSNN--KLS-GPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 146 ~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~l~~N--~l~-g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+.. +++++.+++++|..
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~----~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR----CPNLVHLDLSDSVM 234 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH----CTTCSEEECTTCTT
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh----CCCCCEEeCCCCCc
Confidence 88888888 77754 566677778 8888888888 454 345555555 67788888888763
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=3e-14 Score=125.56 Aligned_cols=142 Identities=22% Similarity=0.224 Sum_probs=92.1
Q ss_pred eeecCC-CeeEEEeeCCCCcccCCccCCCC-----CCCCEEEccCCCCCCCCCCCcc----CC-cccceeecccccCCCC
Q 024203 66 ATCNNG-RIYKLSLTNLSLQGSISPYLSNC-----TNLQSLDLSSNALTGSIPADLQ----YL-VNLAVLNLSANRLAGE 134 (271)
Q Consensus 66 ~~~~~~-~l~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~ 134 (271)
.+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+. .+ ++|++|++++|.+++.
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 334455 67788888887776555555543 7778888888877755554333 33 6788888888887765
Q ss_pred Cchhhhc-----CccCCeeeccCCcCCCCC----chhccCCC-CCCEEEccCCCCCCCCChhhhccCCCC-CCccCCCCc
Q 024203 135 IPPQLTL-----CAYLNVIDLHDNLLTGQI----PQQLGLLV-RLSAFDVSNNKLSGPIPASLGNRSGNL-PKFNASSFE 203 (271)
Q Consensus 135 ~p~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~~~~l~-~L~~L~l~~N~l~g~ip~~~~~~~~~l-~~l~~~~~~ 203 (271)
.+..+.. .++|++|++++|.+++.. +..+..++ +|++|++++|.+++..+..+....... +.++.++++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 5544433 257888888888877533 33344554 788888888888766665555433334 367778888
Q ss_pred CCCC
Q 024203 204 GNKD 207 (271)
Q Consensus 204 ~N~~ 207 (271)
+|..
T Consensus 205 ~N~i 208 (362)
T 3goz_A 205 ANLL 208 (362)
T ss_dssp TSCG
T ss_pred CCCC
Confidence 8764
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=1.1e-12 Score=122.21 Aligned_cols=116 Identities=25% Similarity=0.350 Sum_probs=74.0
Q ss_pred CeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeecc
Q 024203 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151 (271)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 151 (271)
+|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 78888888888875 555 56777777777777774 554 45667777777777764 555 44 666667777
Q ss_pred CCcCCCCCchhccCCCCC-------CEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCCC
Q 024203 152 DNLLTGQIPQQLGLLVRL-------SAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 152 ~N~l~~~~p~~~~~l~~L-------~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~~ 208 (271)
+|+|+ .+|. +.. +| +.|++++|.|+ .+|..+.. ++++..+++++|+..
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~----l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS----LDPTCTIILEDNPLS 243 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG----SCTTEEEECCSSSCC
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc----CCCCCEEEeeCCcCC
Confidence 66666 5555 433 55 66666666666 46665555 555556666666543
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.37 E-value=3.3e-12 Score=116.15 Aligned_cols=106 Identities=25% Similarity=0.228 Sum_probs=64.9
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
++.++++++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++. .++.+++|+
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~ 215 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLT 215 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCS
T ss_pred cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCC
Confidence 345566677777776544444 35566666667776666664 33 55666666666666666643 255666666
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPI 183 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 183 (271)
.|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 216 ~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 216 FLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred EEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 66666666664 44 556666666666666666543
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=8.5e-12 Score=113.40 Aligned_cols=122 Identities=24% Similarity=0.274 Sum_probs=77.2
Q ss_pred eecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC
Q 024203 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (271)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (271)
+..+++|++|++++|.+++ ++ +..+++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++|+
T Consensus 123 ~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~ 194 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLN 194 (457)
T ss_dssp CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCC
T ss_pred CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCC
Confidence 4456677777777777765 32 666777777777777544444 35666777777777777764 44 56667777
Q ss_pred eeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
.|++++|++++. .+..+++|++|++++|++++ +| +.. ++.++.+++++|.
T Consensus 195 ~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~----l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 195 RLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP----LTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTT----CTTCSEEECCSSC
T ss_pred EEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccc----cCCCCEEEeeCCc
Confidence 777777777743 26666777777777777775 44 332 4444455555544
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=1.1e-13 Score=122.86 Aligned_cols=113 Identities=18% Similarity=0.316 Sum_probs=59.5
Q ss_pred CCCCCCCCEEEccCCCCCC-----CCCCCccCCcccceeecccccCC----CCCchhhhcCccCCeeeccCCcCCCC---
Q 024203 91 LSNCTNLQSLDLSSNALTG-----SIPADLQYLVNLAVLNLSANRLA----GEIPPQLTLCAYLNVIDLHDNLLTGQ--- 158 (271)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~--- 158 (271)
+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 3344555555555555541 12224455556666666666653 34455555556666666666665543
Q ss_pred -Cchhc--cCCCCCCEEEccCCCCCC----CCChhhhccCCCCCCccCCCCcCCC
Q 024203 159 -IPQQL--GLLVRLSAFDVSNNKLSG----PIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 159 -~p~~~--~~l~~L~~L~l~~N~l~g----~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
+|..+ +.+++|++|++++|.+++ .+|..+.. .++.++.+++++|+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~---~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE---KMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH---HCTTCCEEECTTSB
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh---cCCCceEEEccCCc
Confidence 34444 225566666666666654 25554421 14555566666655
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=6.8e-14 Score=124.20 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=65.9
Q ss_pred cCCCeeEEEeeCCCCcc----cCCccCCCCCCCCEEEccCCCCCCCCCCCc----cCC---------cccceeecccccC
Q 024203 69 NNGRIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADL----QYL---------VNLAVLNLSANRL 131 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~----~~l---------~~L~~L~Ls~N~l 131 (271)
.+++|++|+|++|.+.+ .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 44566666666666654 244455555666666666665542222122 222 4555555555555
Q ss_pred C-CCCc---hhhhcCccCCeeeccCCcCCC-----CCchhccCCCCCCEEEccCCCCC----CCCChhhhccCCCCCCcc
Q 024203 132 A-GEIP---PQLTLCAYLNVIDLHDNLLTG-----QIPQQLGLLVRLSAFDVSNNKLS----GPIPASLGNRSGNLPKFN 198 (271)
Q Consensus 132 ~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~l~~N~l~----g~ip~~~~~~~~~l~~l~ 198 (271)
+ +.+| ..+..+++|++|++++|+++. ..|..+..+++|++|++++|.++ +.+|..+.. +++++
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~----~~~L~ 247 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS----WPNLR 247 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG----CTTCC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc----CCCcC
Confidence 4 2233 234445555555555555541 12224455555555555555553 334444433 44444
Q ss_pred CCCCcCCC
Q 024203 199 ASSFEGNK 206 (271)
Q Consensus 199 ~~~~~~N~ 206 (271)
.+++++|.
T Consensus 248 ~L~L~~n~ 255 (386)
T 2ca6_A 248 ELGLNDCL 255 (386)
T ss_dssp EEECTTCC
T ss_pred EEECCCCC
Confidence 55555544
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=2e-11 Score=114.90 Aligned_cols=77 Identities=32% Similarity=0.405 Sum_probs=46.7
Q ss_pred cccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCcc
Q 024203 119 VNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN 198 (271)
Q Consensus 119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~ 198 (271)
++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+.+ ++++.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~----l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH----LSSET 287 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG----SCTTC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh----ccccC
Confidence 344555555555542 33 23355666666666666 4444 4566777777777777 66776665 66777
Q ss_pred CCCCcCCCCC
Q 024203 199 ASSFEGNKDL 208 (271)
Q Consensus 199 ~~~~~~N~~~ 208 (271)
.+++++|+..
T Consensus 288 ~L~L~~N~l~ 297 (622)
T 3g06_A 288 TVNLEGNPLS 297 (622)
T ss_dssp EEECCSCCCC
T ss_pred EEEecCCCCC
Confidence 7777777653
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=1.6e-11 Score=111.51 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=41.8
Q ss_pred CCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeec
Q 024203 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (271)
+++++|++++|.+++ +| .+..+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355566666665553 44 35666666666666666653 44322 355555555555553 34 3555555555555
Q ss_pred cCCcCC
Q 024203 151 HDNLLT 156 (271)
Q Consensus 151 s~N~l~ 156 (271)
++|+++
T Consensus 203 ~~N~l~ 208 (454)
T 1jl5_A 203 DNNSLK 208 (454)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555554
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=5.1e-13 Score=117.69 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=114.6
Q ss_pred CCCCCCCeeecCCCeeEEEeeCCCCcccCC----ccCCCCC-CCCEEEccCCCCCCCCCCCccCC-----cccceeeccc
Q 024203 59 FTSYLPGATCNNGRIYKLSLTNLSLQGSIS----PYLSNCT-NLQSLDLSSNALTGSIPADLQYL-----VNLAVLNLSA 128 (271)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~ 128 (271)
+.+..|......+++++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 333345545556679999999999996555 6777888 89999999999997777777665 8999999999
Q ss_pred ccCCCCCchhhhcC-----ccCCeeeccCCcCCCCCchhc----cC-CCCCCEEEccCCCCCCCCChhhhccCCCCC-Cc
Q 024203 129 NRLAGEIPPQLTLC-----AYLNVIDLHDNLLTGQIPQQL----GL-LVRLSAFDVSNNKLSGPIPASLGNRSGNLP-KF 197 (271)
Q Consensus 129 N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~-~l 197 (271)
|.+++..+..+... ++|++|++++|++++..+..+ .. .++|++|++++|.+++..+..+.......+ .+
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 99997777755443 899999999999997666544 33 369999999999998655544433222244 78
Q ss_pred cCCCCcCCCC
Q 024203 198 NASSFEGNKD 207 (271)
Q Consensus 198 ~~~~~~~N~~ 207 (271)
+.+++++|..
T Consensus 170 ~~L~Ls~n~l 179 (362)
T 3goz_A 170 NSLNLRGNNL 179 (362)
T ss_dssp CEEECTTSCG
T ss_pred cEeeecCCCC
Confidence 8889999865
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.25 E-value=5.7e-11 Score=107.85 Aligned_cols=109 Identities=27% Similarity=0.359 Sum_probs=80.6
Q ss_pred CCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcC
Q 024203 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (271)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (271)
+| .+++++++++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|...
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--- 214 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--- 214 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---
Confidence 45 36778899999999999884 66543 588888888888885 56 57888888888888888874 44322
Q ss_pred ccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCCh
Q 024203 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (271)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~ 185 (271)
++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~ 254 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD 254 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc
Confidence 46777777777777 6664 6777777777777777774 443
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.19 E-value=4.9e-11 Score=112.23 Aligned_cols=86 Identities=30% Similarity=0.370 Sum_probs=75.7
Q ss_pred CCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEc
Q 024203 95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174 (271)
Q Consensus 95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 174 (271)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 678888888888884 56 45688999999999999 5666 6789999999999999 88999999999999999
Q ss_pred cCCCCCCCCChhhhc
Q 024203 175 SNNKLSGPIPASLGN 189 (271)
Q Consensus 175 ~~N~l~g~ip~~~~~ 189 (271)
++|++++.+|..+..
T Consensus 292 ~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 292 EGNPLSERTLQALRE 306 (622)
T ss_dssp CSCCCCHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHh
Confidence 999999988887765
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.18 E-value=3.5e-11 Score=105.42 Aligned_cols=147 Identities=17% Similarity=0.106 Sum_probs=73.3
Q ss_pred CCCCCCCCCeeecCCCeeEEEeeCCCCcccCCc-cCCCCCCCCE-EEccCCCCCCCCCCCccCCcccceeecccccCCCC
Q 024203 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISP-YLSNCTNLQS-LDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134 (271)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 134 (271)
|.+....++.+.++++|++|+|++|.+.+.+|. .|.+++++++ +.+++|+++...|..|..+++|++|++++|.++..
T Consensus 40 N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 40 TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence 334333334555566666666666665444443 3455555443 34445566544455566666666666666666533
Q ss_pred CchhhhcCc--------------------------cCCeeeccCCcCCCCCchhccCCCCCCEEEccC-CCCCCCCChhh
Q 024203 135 IPPQLTLCA--------------------------YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN-NKLSGPIPASL 187 (271)
Q Consensus 135 ~p~~~~~l~--------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~g~ip~~~ 187 (271)
.+..+.... .++.|++++|+++ .+|.......+|+.+++++ |.++ .+|...
T Consensus 120 ~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~ 197 (350)
T 4ay9_X 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDV 197 (350)
T ss_dssp CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTT
T ss_pred Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHH
Confidence 322222211 2334444444444 3333333334445555543 2232 344321
Q ss_pred hccCCCCCCccCCCCcCCCCC
Q 024203 188 GNRSGNLPKFNASSFEGNKDL 208 (271)
Q Consensus 188 ~~~~~~l~~l~~~~~~~N~~~ 208 (271)
. ..+++++.+++++|...
T Consensus 198 f---~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 198 F---HGASGPVILDISRTRIH 215 (350)
T ss_dssp T---TTEECCSEEECTTSCCC
T ss_pred h---ccCcccchhhcCCCCcC
Confidence 1 13667788888888643
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.18 E-value=5.1e-13 Score=120.88 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=57.8
Q ss_pred eeecCCCeeEEEeeCCCCcccC-----CccCCCCCCCCEEEccCCCCCCC----CCCCccCCcccceeecccccCCCCCc
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSI-----SPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
.+..++++++|++++|.+...- +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 3345667777777777665321 12223456666777776666632 34444455666666666665543222
Q ss_pred hhhhcC-----ccCCeeeccCCcCCCC----CchhccCCCCCCEEEccCCCCC
Q 024203 137 PQLTLC-----AYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 137 ~~~~~l-----~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
..+... ++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 222221 3455555555554432 2333344444444444444444
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=5.9e-11 Score=103.98 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=75.2
Q ss_pred eeecCCCee-EEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCC-------------------------CCCCccCC-
Q 024203 66 ATCNNGRIY-KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS-------------------------IPADLQYL- 118 (271)
Q Consensus 66 ~~~~~~~l~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------------------------~p~~~~~l- 118 (271)
.+.+++++. .+.+.+|.+....|..|..+++|++|++++|.+.+. .+..|..+
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 334444433 234444555544444555555555555555555422 22233333
Q ss_pred cccceeecccccCCCCCchhhhcCccCCeeeccC-CcCCCCCc-hhccCCCCCCEEEccCCCCCCCCChh
Q 024203 119 VNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD-NLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPAS 186 (271)
Q Consensus 119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~ip~~ 186 (271)
..++.|++++|+++ .+|.......+|+.+++++ |.++ .+| +.|..+++|++|++++|+++ .+|..
T Consensus 154 ~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~ 220 (350)
T 4ay9_X 154 FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY 220 (350)
T ss_dssp SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred hhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh
Confidence 35788999999998 5565555667899999985 5566 666 56789999999999999999 55543
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.04 E-value=1.1e-11 Score=111.95 Aligned_cols=109 Identities=25% Similarity=0.217 Sum_probs=54.5
Q ss_pred CeeEEEeeCCCCcc----cCCccCCCCCCCCEEEccCCCCCCCCCCCcc-----CCcccceeecccccCCCCC----chh
Q 024203 72 RIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQ-----YLVNLAVLNLSANRLAGEI----PPQ 138 (271)
Q Consensus 72 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~----p~~ 138 (271)
++++|++++|.+.. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666666652 3455566666666666666665432222111 1234566666666555322 333
Q ss_pred hhcCccCCeeeccCCcCCCCCchhcc-----CCCCCCEEEccCCCCC
Q 024203 139 LTLCAYLNVIDLHDNLLTGQIPQQLG-----LLVRLSAFDVSNNKLS 180 (271)
Q Consensus 139 ~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~ 180 (271)
+..+++|++|++++|.+++..+..+. ..++|++|++++|.++
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 44445555555555555433222221 2335555555555554
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=2e-11 Score=108.00 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=92.2
Q ss_pred CCeeEEEeeCCCCcccCCccC-CCCCCCCEEEccCCCCCCCCCCCc-----cCCcccceeecccccCCC----CCchhhh
Q 024203 71 GRIYKLSLTNLSLQGSISPYL-SNCTNLQSLDLSSNALTGSIPADL-----QYLVNLAVLNLSANRLAG----EIPPQLT 140 (271)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~----~~p~~~~ 140 (271)
.+|+.|+|++|.+...-...+ ..+++|+.|+|++|.++..-...+ ...++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 578899999988864322222 235678889999998874322222 235778999999998863 2334456
Q ss_pred cCccCCeeeccCCcCCCC----CchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 141 LCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
..++|++|+|++|.+++. ++..+...++|++|++++|.++..-...+.......+.++.+++++|+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 678899999999988742 3556677788999999999887432222322111256788888888864
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=7.5e-11 Score=104.38 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=96.9
Q ss_pred CCCeeEEEeeCCCCcccCCcc----CC-CCCCCCEEEccCCCCCCCCCCC-ccCCcccceeecccccCCCCCchhhh---
Q 024203 70 NGRIYKLSLTNLSLQGSISPY----LS-NCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQLT--- 140 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~----l~-~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~--- 140 (271)
.++++.|++++|.++...... +. ..++|++|+|++|.++..-... ...+++|+.|+|++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 367999999999987532222 22 2369999999999987432222 23467899999999999854334442
Q ss_pred --cCccCCeeeccCCcCCC----CCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCCC
Q 024203 141 --LCAYLNVIDLHDNLLTG----QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (271)
Q Consensus 141 --~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~~ 207 (271)
..++|++|++++|.++. .++..+...++|++|++++|.++..-...+.......+.++.+++++|..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 35789999999999974 24555678899999999999997432122222122256788889988864
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.74 E-value=4.9e-10 Score=104.38 Aligned_cols=134 Identities=11% Similarity=0.029 Sum_probs=89.6
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCC-CCCCCEEEcc----CCCCCCC-----CCCCccCCcccceeecccc--cCCCCCc
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSN-CTNLQSLDLS----SNALTGS-----IPADLQYLVNLAVLNLSAN--RLAGEIP 136 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~L~Ls~N--~l~~~~p 136 (271)
.+++|++|++..+.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+++++ .+++..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 3667777777777776555445544 7778888885 5666642 2222455778888888643 3554444
Q ss_pred hhhhc-CccCCeeeccCCcCCC-CCchhccCCCCCCEEEccCCCCCCC-CChhhhccCCCCCCccCCCCcCCC
Q 024203 137 PQLTL-CAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGP-IPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 137 ~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~-ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
..+.. +++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..... +++++.+++++|+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK----LPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH----CSSCCEEEEESCB
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh----cCccCeeECcCCc
Confidence 44443 7788888888888875 3455567788899999999988654 3333333 6778888888887
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=2.3e-08 Score=86.55 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=60.4
Q ss_pred CcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCC-EEEccCCCCCCCCChhhhccCCCCCC
Q 024203 118 LVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS-AFDVSNNKLSGPIPASLGNRSGNLPK 196 (271)
Q Consensus 118 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~ip~~~~~~~~~l~~ 196 (271)
+++|+.+++++|+++...+..|.++.+|+.+++.+| ++..-+..|.++.+|+ .+++.+ .++..-+..|.+ +++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~----c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMG----CDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTT----CTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhC----Ccc
Confidence 568888888888888555667888888999988887 6645556788888888 888887 666333455555 556
Q ss_pred ccCCCCcCCC
Q 024203 197 FNASSFEGNK 206 (271)
Q Consensus 197 l~~~~~~~N~ 206 (271)
|+.+++.+|.
T Consensus 299 L~~l~l~~n~ 308 (329)
T 3sb4_A 299 LRYVLATGDK 308 (329)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEeCCCc
Confidence 6666665554
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.60 E-value=7.8e-09 Score=96.18 Aligned_cols=102 Identities=16% Similarity=0.228 Sum_probs=56.0
Q ss_pred eeEEEeeCCC-Ccc-cCCccCCCCCCCCEEEccCCCCCCC----CCCCccCCcccceeecccccCCC----CCchhhhcC
Q 024203 73 IYKLSLTNLS-LQG-SISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAG----EIPPQLTLC 142 (271)
Q Consensus 73 l~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l 142 (271)
|++|++++|. +.. .++.....+++|++|++++|.+++. ++..+..+++|+.|++++|.+++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777665 110 1122223566777777777766543 22223445667777777776652 223334456
Q ss_pred ccCCeeeccCCcCCCCCchhccCCCCCCEEEcc
Q 024203 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (271)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (271)
++|+.|++++|.+.+ +|..+..+++|++|+++
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 667777776666653 44555555555555554
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=9e-08 Score=82.84 Aligned_cols=94 Identities=20% Similarity=0.112 Sum_probs=57.2
Q ss_pred CCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCC-eeeccCCcCCCCCchhccCCCCCCEE
Q 024203 94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN-VIDLHDNLLTGQIPQQLGLLVRLSAF 172 (271)
Q Consensus 94 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L 172 (271)
+++|+.+++++|+++...+..|..+++|+.+++.+| ++...+..|.++.+|+ .+++.+ +++..-+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566677777766666333445666667777777666 5544455666666676 677666 5553444666667777777
Q ss_pred EccCCCCCCCCChhhhc
Q 024203 173 DVSNNKLSGPIPASLGN 189 (271)
Q Consensus 173 ~l~~N~l~g~ip~~~~~ 189 (271)
++++|.++..-+..|.+
T Consensus 303 ~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 303 LATGDKITTLGDELFGN 319 (329)
T ss_dssp EECSSCCCEECTTTTCT
T ss_pred EeCCCccCccchhhhcC
Confidence 77666666333334433
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=4.2e-08 Score=82.51 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=58.9
Q ss_pred EEccCCCCCCCCCCC----ccCCcccceeecccccCCC--CCchhhhcCccCCeeeccCCcCCCCCchhccCCC--CCCE
Q 024203 100 LDLSSNALTGSIPAD----LQYLVNLAVLNLSANRLAG--EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLV--RLSA 171 (271)
Q Consensus 100 L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~ 171 (271)
++++.|... .++.. ...+++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence 566666433 22221 1357789999999999986 4456677889999999999999854 2234444 8999
Q ss_pred EEccCCCCCCCCC
Q 024203 172 FDVSNNKLSGPIP 184 (271)
Q Consensus 172 L~l~~N~l~g~ip 184 (271)
|++++|++++.+|
T Consensus 225 L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 225 LWLDGNSLCDTFR 237 (267)
T ss_dssp EECTTSTTGGGCS
T ss_pred EEccCCcCccccC
Confidence 9999999988776
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=4.1e-09 Score=83.96 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=61.1
Q ss_pred cCCCeeEEEeeCC-CCccc----CCccCCCCCCCCEEEccCCCCCCC----CCCCccCCcccceeecccccCCCC----C
Q 024203 69 NNGRIYKLSLTNL-SLQGS----ISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGE----I 135 (271)
Q Consensus 69 ~~~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 135 (271)
..+++++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.++.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3566777777777 66521 333445556677777777766521 222333445666666666666532 2
Q ss_pred chhhhcCccCCeeec--cCCcCCCC----CchhccCCCCCCEEEccCCCCC
Q 024203 136 PPQLTLCAYLNVIDL--HDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 136 p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
...+...++|++|++ ++|.++.. +...+...++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233444456666666 55666532 2233444456666666666553
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.49 E-value=8.8e-09 Score=95.81 Aligned_cols=132 Identities=10% Similarity=0.053 Sum_probs=76.1
Q ss_pred CCCeeEEEeeCCCCcccCCccCC-CCCCCCEEEcc--C----CCCCCCCCC------CccCCcccceeecccccCCCCCc
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLS--S----NALTGSIPA------DLQYLVNLAVLNLSANRLAGEIP 136 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p 136 (271)
+++|++|.+..+.+++.....+. .+++|+.|+++ + |.++ ..|. .+..+++|+.|++++ .+++..+
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 45666666666665543333332 36677777777 3 3444 1111 134566777777765 5554444
Q ss_pred hhhhc-CccCCeeeccCCcCCCCCchhc-cCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 137 PQLTL-CAYLNVIDLHDNLLTGQIPQQL-GLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 137 ~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+. ..+++++.+++++|+
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA---SKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG---GGGGGSSEEEEESSC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH---HhCCCCCEEeeeCCC
Confidence 44444 6778888888777765444333 5577788888888877533222222 125667777777764
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=2.1e-07 Score=78.20 Aligned_cols=64 Identities=34% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCCCCEEEccCCCCCC--CCCCCccCCcccceeecccccCCCCCchhhhcCc--cCCeeeccCCcCCCCC
Q 024203 94 CTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA--YLNVIDLHDNLLTGQI 159 (271)
Q Consensus 94 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~ 159 (271)
+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 3444555555555443 2223333444555555555554432 1222222 4445555555544433
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=1.4e-08 Score=80.86 Aligned_cols=120 Identities=11% Similarity=0.187 Sum_probs=86.3
Q ss_pred CCccCCCCCCCCEEEccCC-CCCCC----CCCCccCCcccceeecccccCCCC----CchhhhcCccCCeeeccCCcCCC
Q 024203 87 ISPYLSNCTNLQSLDLSSN-ALTGS----IPADLQYLVNLAVLNLSANRLAGE----IPPQLTLCAYLNVIDLHDNLLTG 157 (271)
Q Consensus 87 ~p~~l~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 157 (271)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445667899999999999 88732 334456678999999999999742 23345556889999999999985
Q ss_pred C----CchhccCCCCCCEEEc--cCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 158 Q----IPQQLGLLVRLSAFDV--SNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 158 ~----~p~~~~~l~~L~~L~l--~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
. +...+...++|++|++ ++|.+...--..+.......+.++.+++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3 4566777889999999 88999754323333322224567777777764
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.23 E-value=1.9e-07 Score=86.82 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=39.2
Q ss_pred cCCCeeEEEeeCCCCcccCCccCC-CCCCCCEEEccCC-CCCCC-CCCCccCCcccceeecccccCCCCCchhhh----c
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSN-ALTGS-IPADLQYLVNLAVLNLSANRLAGEIPPQLT----L 141 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~ 141 (271)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 355666666666665543333332 3455555555555 22211 222222445555555555554433332222 2
Q ss_pred CccCCeeeccCCc
Q 024203 142 CAYLNVIDLHDNL 154 (271)
Q Consensus 142 l~~L~~L~Ls~N~ 154 (271)
+++|+.|++++|.
T Consensus 183 ~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 183 YTSLVSLNISCLA 195 (594)
T ss_dssp CCCCCEEECTTCC
T ss_pred CCcCcEEEecccC
Confidence 3345555555443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1.3e-07 Score=83.12 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=19.4
Q ss_pred CccCCeeeccCCcCCCCCchhc---cCCCCCCEEEccCCCCCC
Q 024203 142 CAYLNVIDLHDNLLTGQIPQQL---GLLVRLSAFDVSNNKLSG 181 (271)
Q Consensus 142 l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~g 181 (271)
+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 4555555555555543222222 134555555555555543
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=5.5e-07 Score=79.16 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=61.9
Q ss_pred CCCCCCEEEccC--CCCCCC-----CCCCc--cCCcccceeecccccCCCCCchhhh---cCccCCeeeccCCcCCCC--
Q 024203 93 NCTNLQSLDLSS--NALTGS-----IPADL--QYLVNLAVLNLSANRLAGEIPPQLT---LCAYLNVIDLHDNLLTGQ-- 158 (271)
Q Consensus 93 ~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~-- 158 (271)
.+++|+.|+|+. |...+. +...+ ..+++|++|++++|.+.+..+..+. .+++|++|+|+.|.+++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 578888888753 221111 11112 2468999999999988754444443 478999999999999863
Q ss_pred --CchhccCCCCCCEEEccCCCCCCC
Q 024203 159 --IPQQLGLLVRLSAFDVSNNKLSGP 182 (271)
Q Consensus 159 --~p~~~~~l~~L~~L~l~~N~l~g~ 182 (271)
++..+..+++|+.|++++|.++..
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhhcccCCcceEEECCCCcCCHH
Confidence 344445679999999999988743
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.01 E-value=1.7e-05 Score=70.56 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=30.3
Q ss_pred eeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccc
Q 024203 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA 128 (271)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 128 (271)
.+.++.+|+.+++.+|.+. .++.......+|+.+.+..+ +...-...|..+++|+.+++..
T Consensus 175 aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 3445566666666666655 23332222455555555532 3322333455555555555554
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.94 E-value=2.6e-05 Score=69.33 Aligned_cols=132 Identities=13% Similarity=0.144 Sum_probs=84.4
Q ss_pred CeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCC-----CCCchhh
Q 024203 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-----GEIPPQL 139 (271)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~ 139 (271)
+.+.++.+|+.+++.++ +...-...|.+ .+|+.+++. +.++..-...|..+++|+.+++.+|.+. ...+..|
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 34556778888888875 44233344555 678888884 4455344566778888888888877664 2445677
Q ss_pred hcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCCCCCChhhhccCCCCCCccCCCCcCCC
Q 024203 140 TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (271)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~l~~l~~~~~~~N~ 206 (271)
.++++|+.+++. ++++..-...|.++++|+.+++..| ++..-+..|.+ . .++.+.+.+|.
T Consensus 297 ~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~----~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 297 EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN----T-GIKEVKVEGTT 356 (401)
T ss_dssp TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS----S-CCCEEEECCSS
T ss_pred hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC----C-CCCEEEEcCCC
Confidence 778888888887 4466344566777788888888554 54233344444 3 45566666654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=4.2e-06 Score=65.65 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=18.6
Q ss_pred cCCeeeccCCc-CCCCCchhccCCCCCCEEEccCCC
Q 024203 144 YLNVIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNK 178 (271)
Q Consensus 144 ~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~ 178 (271)
+|++|++++|. ++..--..+..+++|++|+++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 45566665553 443222234556666666666654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=9.4e-06 Score=63.66 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=68.8
Q ss_pred CCCeeecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCC-CCCCCCCCccCC----cccceeeccccc-CCCCCc
Q 024203 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA-LTGSIPADLQYL----VNLAVLNLSANR-LAGEIP 136 (271)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p 136 (271)
.|......-+|+.|+++++.++..--..+..+++|++|+|+++. ++..--..+..+ ++|++|+++++. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 44433334579999999999875544557889999999999995 653322334443 479999999985 775444
Q ss_pred hhhhcCccCCeeeccCCc-CC
Q 024203 137 PQLTLCAYLNVIDLHDNL-LT 156 (271)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~-l~ 156 (271)
..+..+++|+.|+++++. ++
T Consensus 133 ~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCC
T ss_pred HHHhcCCCCCEEECCCCCCCC
Confidence 567788999999999885 55
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.56 E-value=0.0001 Score=54.78 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=32.5
Q ss_pred eeecccccCC-CCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCCCCC
Q 024203 123 VLNLSANRLA-GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (271)
Q Consensus 123 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (271)
.++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666664 23443321 35666777777766443445566666666666666654
No 156
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=97.28 E-value=0.00061 Score=39.90 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024203 222 SVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHK 255 (271)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (271)
....|++.++++++++++++..++++++||++++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4456677777666666666655555555554444
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.13 E-value=6e-05 Score=60.14 Aligned_cols=60 Identities=13% Similarity=0.256 Sum_probs=31.9
Q ss_pred CcccceeecccccCCCC----CchhhhcCccCCeeeccCCcCCCC----CchhccCCCCCCEEEccCC
Q 024203 118 LVNLAVLNLSANRLAGE----IPPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNN 177 (271)
Q Consensus 118 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N 177 (271)
-+.|+.|+|++|.+... +...+..-+.|+.|+|++|.|... +-+.+..-+.|++|++++|
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34555555555555421 122233335566666666666532 2234555567788888754
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.0012 Score=48.86 Aligned_cols=56 Identities=25% Similarity=0.244 Sum_probs=36.2
Q ss_pred EEEeeCCCCc-ccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCC
Q 024203 75 KLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132 (271)
Q Consensus 75 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 132 (271)
.++-++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777775 34554432 45777777777777444455666777777777777654
No 159
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=97.06 E-value=0.00066 Score=39.87 Aligned_cols=32 Identities=13% Similarity=-0.025 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024203 223 VLAIVGIGLGSGFASLVISFTGVCIWLKVTEH 254 (271)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (271)
...|++.++++++++++++..++++++||+.+
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 34556666665555555555555555554443
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.04 E-value=6.6e-05 Score=59.91 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=57.5
Q ss_pred cCCCeeEEEeeCC-CCcc----cCCccCCCCCCCCEEEccCCCCCCC----CCCCccCCcccceeecccccCCCCCc---
Q 024203 69 NNGRIYKLSLTNL-SLQG----SISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGEIP--- 136 (271)
Q Consensus 69 ~~~~l~~L~L~~n-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p--- 136 (271)
+.+.|++|+|++| .+.. .+...+..-+.|+.|+|++|.+... +.+.+..-+.|+.|+|++|.|...--
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4567889999885 6652 2344556667899999999988742 23334455789999999999874222
Q ss_pred -hhhhcCccCCeeeccCC
Q 024203 137 -PQLTLCAYLNVIDLHDN 153 (271)
Q Consensus 137 -~~~~~l~~L~~L~Ls~N 153 (271)
..+..-+.|+.|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 22333456899999865
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.99 E-value=0.0031 Score=55.48 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=35.7
Q ss_pred CCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCC
Q 024203 91 LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS 170 (271)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 170 (271)
|.+++.|+.+.+. +.++..-...|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-...|.++.+|+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 4444445554443 2222122233444455555555433 22222334445555555555332 3312223445555555
Q ss_pred EEEccCC
Q 024203 171 AFDVSNN 177 (271)
Q Consensus 171 ~L~l~~N 177 (271)
.+++.+|
T Consensus 361 ~i~~~~~ 367 (394)
T 4gt6_A 361 NIEYSGS 367 (394)
T ss_dssp EEEESSC
T ss_pred EEEECCc
Confidence 5555443
No 162
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=96.85 E-value=0.0035 Score=36.59 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024203 222 SVLAIVGIGLGSGFASLVISFTGVCIWLKVTEH 254 (271)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (271)
....+++++++ ++++++++..++++++||+.+
T Consensus 10 ~~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 10 PLTSIISAVVG-ILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp SHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSC
T ss_pred cccchHHHHHH-HHHHHHHHHHHHhheehhhhh
Confidence 34456666666 444444444444444444333
No 163
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=96.78 E-value=0.0032 Score=35.75 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=23.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024203 218 SKGLSVLAIVGIGLGSGFASLVISFTGVCIWLK 250 (271)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (271)
.++++...+++++++.++.+++++...+|+|+|
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 456778889999888877766666666666544
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.68 E-value=0.0034 Score=55.19 Aligned_cols=105 Identities=12% Similarity=0.217 Sum_probs=69.1
Q ss_pred cCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCee
Q 024203 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (271)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (271)
++..|+.+.+.+ .+...-...|.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++..-...|.++.+|+.+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 445666666653 344333456888999999999865 55334567889999999999765 664556789999999999
Q ss_pred eccCCcCCCCCchhccCCCCCCEEEccCCCC
Q 024203 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179 (271)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 179 (271)
++.++.... ..+....+|+.+.+..|.+
T Consensus 363 ~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCHHHH---HTCBCCCCC----------
T ss_pred EECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999886542 4566778888887776654
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.61 E-value=0.0044 Score=54.04 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeee
Q 024203 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (271)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (271)
..+++.+.+..+ +...-...+.++..|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++......|.++.+|+.++
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 345555555443 22223344555666666666544 33222334555566666666443 3323334555666666666
Q ss_pred ccCCcCCCCCchhccCCCCCCEEEccC
Q 024203 150 LHDNLLTGQIPQQLGLLVRLSAFDVSN 176 (271)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 176 (271)
+.++.++..-...|.++.+|+.+.+..
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCc
Confidence 666655533344556666666666654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.52 E-value=0.014 Score=50.71 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=72.9
Q ss_pred ecCCCeeEEEeeCCCCcccCCccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCe
Q 024203 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (271)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (271)
.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +...-...|..+.+|+.+++.++.++..-...|.++.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 34567788887765 44333456777888888888654 44233445777888888888888777555667888888888
Q ss_pred eeccCCcCCCCCchhccCCCCCCEEEccCC
Q 024203 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (271)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (271)
+++..+ ++..-...|.++.+|+.+.+..+
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 888654 54233456778888887776543
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.26 E-value=0.011 Score=51.77 Aligned_cols=61 Identities=15% Similarity=0.029 Sum_probs=31.4
Q ss_pred ccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCCCEEEccCC
Q 024203 115 LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (271)
Q Consensus 115 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (271)
|..+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+++..|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 444555555555443 33233445556666666666433 44222345556666666666544
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.20 E-value=0.011 Score=51.95 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=65.0
Q ss_pred cCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccCCCCCchhhhcCccCCeeeccCCcCCCCCchhccCCCCC
Q 024203 90 YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRL 169 (271)
Q Consensus 90 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 169 (271)
.+..+.+|+.+.+..+ ++..-...|..+.+|+.+++..+ ++..-...|.++.+|+.+++..| ++..-...|.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4566788888888755 44233456888999999999765 66455678999999999999876 663445679999999
Q ss_pred CEEEccCC
Q 024203 170 SAFDVSNN 177 (271)
Q Consensus 170 ~~L~l~~N 177 (271)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 99998754
No 169
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=88.44 E-value=0.46 Score=27.08 Aligned_cols=8 Identities=13% Similarity=0.040 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 024203 226 IVGIGLGS 233 (271)
Q Consensus 226 ~~~~~~~~ 233 (271)
+++.++++
T Consensus 15 I~~~vv~G 22 (41)
T 2k9y_A 15 VIGGVAVG 22 (41)
T ss_dssp HHHHHHHH
T ss_pred EEeehhHH
Confidence 33333333
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=87.84 E-value=0.23 Score=27.34 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024203 225 AIVGIGLGSGFASLVISFTGVCIWLKV 251 (271)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (271)
.+++.+++ .+++++++..+.++++||
T Consensus 9 sIaagVvg-lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 9 FIIATVVG-VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHH-HHHHHHHTTTTTHHHHHC
T ss_pred EeHHHHHH-HHHHHHHHHHhheEEeec
Confidence 34444444 444444444444444443
No 171
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=84.56 E-value=1 Score=28.39 Aligned_cols=6 Identities=33% Similarity=0.119 Sum_probs=2.4
Q ss_pred HHHHHH
Q 024203 230 GLGSGF 235 (271)
Q Consensus 230 ~~~~~~ 235 (271)
++|+++
T Consensus 13 vlGg~~ 18 (70)
T 2klu_A 13 VLGGVA 18 (70)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 444433
No 172
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=83.62 E-value=2.7 Score=25.55 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=5.5
Q ss_pred CchhhHHHHHHHH
Q 024203 221 LSVLAIVGIGLGS 233 (271)
Q Consensus 221 ~~~~~~~~~~~~~ 233 (271)
...+.++..++++
T Consensus 10 vp~wiIi~svl~G 22 (54)
T 2knc_A 10 IPIWWVLVGVLGG 22 (54)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 3444444444433
No 173
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=80.55 E-value=3.2 Score=22.40 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=16.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHH
Q 024203 220 GLSVLAIVGIGLGSGFASLVISFTG 244 (271)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (271)
.++...+++++++.+++.++++..+
T Consensus 3 ~L~~gaIaGIVvgdi~~t~~i~~~v 27 (33)
T 2l34_A 3 TVSPGVLAGIVVGDLVLTVLIALAV 27 (33)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEeEeHHHHHHHHHHHHHH
Confidence 3566778888887766655444433
No 174
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=75.72 E-value=1.7 Score=28.73 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=5.3
Q ss_pred chhhHHHHHHHH
Q 024203 222 SVLAIVGIGLGS 233 (271)
Q Consensus 222 ~~~~~~~~~~~~ 233 (271)
+...+++.++++
T Consensus 9 n~~~Iv~gvi~g 20 (79)
T 2knc_B 9 DILVVLLSVMGA 20 (79)
T ss_dssp CSHHHHHHHHHH
T ss_pred CchhhHHHHHHH
Confidence 444444444433
No 175
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=72.67 E-value=5.5 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 024203 228 GIGLGSGFASLVISFTGVCIWLKVTEHKMAL 258 (271)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (271)
+|+.+++..+++++.++...|...||++.++
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3333333334444455555555555555443
No 176
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=70.73 E-value=13 Score=21.46 Aligned_cols=15 Identities=7% Similarity=-0.449 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhhhcc
Q 024203 239 VISFTGVCIWLKVTE 253 (271)
Q Consensus 239 ~~~~~~~~~~~~~~~ 253 (271)
+..++++-.++++++
T Consensus 29 ~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 29 LGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHTTTCCSC
T ss_pred HHHHHHhhhhHhhcc
Confidence 344445555555444
No 177
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=70.32 E-value=8.8 Score=23.20 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=4.9
Q ss_pred chhhHHHHHHHH
Q 024203 222 SVLAIVGIGLGS 233 (271)
Q Consensus 222 ~~~~~~~~~~~~ 233 (271)
..+.+++.++++
T Consensus 8 p~WiIi~svl~G 19 (54)
T 2l8s_A 8 PLWVILLSAFAG 19 (54)
T ss_dssp CTHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 344444444433
No 178
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=66.58 E-value=6.6 Score=24.72 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 024203 226 IVGIGLGSGF 235 (271)
Q Consensus 226 ~~~~~~~~~~ 235 (271)
+++.+++..+
T Consensus 13 vlGg~~~lll 22 (70)
T 2klu_A 13 VLGGVAGLLL 22 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHH
Confidence 4444444433
No 179
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=61.96 E-value=17 Score=19.61 Aligned_cols=9 Identities=11% Similarity=0.172 Sum_probs=3.8
Q ss_pred HHHHhhhhh
Q 024203 243 TGVCIWLKV 251 (271)
Q Consensus 243 ~~~~~~~~~ 251 (271)
..+.+|+-|
T Consensus 25 ~tflywrgr 33 (40)
T 2l9u_A 25 GTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHH
T ss_pred ceeEEEccc
Confidence 334444433
No 180
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.21 E-value=15 Score=22.12 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 024203 225 AIVGIGLGSGFASLVISFTGVCIWL 249 (271)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (271)
.+.+++++++.+.++++..++..|+
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555555555543
No 181
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=58.15 E-value=24 Score=21.32 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 024203 224 LAIVGIGLGSGFASLVISFTGVCIWL 249 (271)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (271)
..+..++++++.++++++..++..|+
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555555555543
No 182
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=46.49 E-value=8.5 Score=18.93 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=7.9
Q ss_pred HHHHHHHhhhhhccc
Q 024203 240 ISFTGVCIWLKVTEH 254 (271)
Q Consensus 240 ~~~~~~~~~~~~~~~ 254 (271)
-+.-.++.|.+|+|+
T Consensus 11 ~~LP~liSWiK~kr~ 25 (26)
T 3qrx_B 11 TGLPALISWIKRKRQ 25 (26)
T ss_pred ccchHHHHHHHHHhc
Confidence 333445566665554
No 183
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=41.51 E-value=33 Score=19.51 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=4.4
Q ss_pred chhhHHHHHHH
Q 024203 222 SVLAIVGIGLG 232 (271)
Q Consensus 222 ~~~~~~~~~~~ 232 (271)
+...+++.+++
T Consensus 8 n~~~Iv~gvi~ 18 (43)
T 2k9j_B 8 DILVVLLSVMG 18 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred CEeehHHHHHH
Confidence 34444433333
No 184
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=39.18 E-value=9.2 Score=37.17 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCCchhhHHHHHHHH
Q 024203 219 KGLSVLAIVGIGLGS 233 (271)
Q Consensus 219 ~~~~~~~~~~~~~~~ 233 (271)
.++...+++++.++.
T Consensus 700 ~~l~~~aii~il~~~ 714 (880)
T 1q55_A 700 GGFDLPIILVILGSV 714 (880)
T ss_dssp ---------------
T ss_pred cCccHHHHHHHHHHH
Confidence 345555555554433
No 185
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.12 E-value=1e+02 Score=20.74 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=15.0
Q ss_pred ccCCcccceeecccccCCCCCchhhhcCccCCeeecc
Q 024203 115 LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151 (271)
Q Consensus 115 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 151 (271)
|..+.+|+.+.+..+- +..-...|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEc
Confidence 4444444444444331 21223344444445444443
No 186
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=40.93 E-value=8.2 Score=21.50 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=3.5
Q ss_pred HHHhhhhh
Q 024203 244 GVCIWLKV 251 (271)
Q Consensus 244 ~~~~~~~~ 251 (271)
.+..|++|
T Consensus 28 Li~~w~qK 35 (39)
T 2l6w_A 28 LIMLWQKK 35 (39)
Confidence 33445444
No 187
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=34.15 E-value=59 Score=17.72 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024203 226 IVGIGLGSGFASLVISFTGVCI 247 (271)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~ 247 (271)
+.+|+++.+.+.++..++..+.
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~ 27 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHH
Confidence 3455555554444443333333
No 188
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.39 E-value=1.3e+02 Score=20.18 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=19.3
Q ss_pred ccCCCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccc
Q 024203 89 PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA 128 (271)
Q Consensus 89 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 128 (271)
..|.++++|+.+.+..+ ++..-...|..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34555555555555543 2212233455566666665543
No 189
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=32.03 E-value=14 Score=21.04 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 024203 225 AIVGIGLGS 233 (271)
Q Consensus 225 ~~~~~~~~~ 233 (271)
++++..+++
T Consensus 18 a~iGL~v~g 26 (43)
T 2llm_A 18 AIIGLMVGG 26 (43)
Confidence 344444333
No 190
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=22.71 E-value=1.1e+02 Score=17.21 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=5.1
Q ss_pred CchhhHHHHHHHH
Q 024203 221 LSVLAIVGIGLGS 233 (271)
Q Consensus 221 ~~~~~~~~~~~~~ 233 (271)
...+.++..++++
T Consensus 8 vp~wiIi~s~l~G 20 (42)
T 2k1a_A 8 IPIWWVLVGVLGG 20 (42)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 3344444433333
No 191
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=22.19 E-value=58 Score=17.76 Aligned_cols=12 Identities=50% Similarity=0.648 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 024203 227 VGIGLGSGFASL 238 (271)
Q Consensus 227 ~~~~~~~~~~~~ 238 (271)
.+|+++.+.+.+
T Consensus 7 ~GIVlGlipvtl 18 (37)
T 1vf5_G 7 DGLVLGLVFATL 18 (37)
T ss_dssp --CHHHHHHHHH
T ss_pred hhHHHhhHHHHH
Confidence 344444444333
No 192
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=20.25 E-value=1.4e+02 Score=17.26 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=5.7
Q ss_pred HHHHHHHhhhhh
Q 024203 240 ISFTGVCIWLKV 251 (271)
Q Consensus 240 ~~~~~~~~~~~~ 251 (271)
++.+..|-|.||
T Consensus 33 ~v~i~v~k~IRr 44 (46)
T 2ifo_A 33 MVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334445555554
Done!