Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>024205
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKR
SPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLI
GALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRV
DEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSF
EFEESEEMKEFTRKRKRLWQLTPVYVSEWSK

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024205
        (271 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2117803 - symbol:AT4G28740 "AT4G28740" species...   676  1.7e-66   1
TAIR|locus:2024720 - symbol:LPA1 "LOW PSII ACCUMULATION1"...   213  9.7e-17   1


>TAIR|locus:2117803 [details] [associations]
            symbol:AT4G28740 "AT4G28740" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0009658 "chloroplast organization"
            evidence=IMP] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            GO:GO:0009507 EMBL:CP002687 GO:GO:0009658 IPI:IPI00531840
            RefSeq:NP_567817.1 UniGene:At.2529 PRIDE:F4JM22
            EnsemblPlants:AT4G28740.1 GeneID:828995 KEGG:ath:AT4G28740
            OMA:GVGYPPW InterPro:IPR021883 Pfam:PF11998 Uniprot:F4JM22
        Length = 347

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 135/219 (61%), Positives = 171/219 (78%)

Query:    55 TWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLI 114
             T T K+ PL  N  C A D    EIS+ ARIR+EVLSPFRSVRMFFYLAF+ASGSLGGLI
Sbjct:    68 TITRKQQPLSFNTVCFAADEPS-EISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLI 126

Query:   115 AITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLS 174
             A ++LIGALANPAR+ +V EI+KGL +D+ A SLFAFLY  ENK KNAQ+ARLSREE+L 
Sbjct:   127 ATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLG 186

Query:   175 NLKLRVDEK-KIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTT 233
              LK+RV+E  K+ISV +LRG+ARLVIC+GPA +I E+FKRS+ +T+ L+ERGV+VV++ T
Sbjct:   187 KLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYAT 246

Query:   234 DGNIPXXXXXXXXXM-KEFTRKRKRLWQLTPVYVSEWSK 271
             DGN P           +E +++RK+LW++TPV+V EW K
Sbjct:   247 DGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEK 285


>TAIR|locus:2024720 [details] [associations]
            symbol:LPA1 "LOW PSII ACCUMULATION1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0010270 "photosystem II oxygen evolving complex assembly"
            evidence=IMP] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] InterPro:IPR001440 InterPro:IPR011990
            InterPro:IPR013026 InterPro:IPR019734 Pfam:PF00515 PROSITE:PS50005
            PROSITE:PS50293 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009507 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
            EMBL:AC009525 GO:GO:0010270 InterPro:IPR021883 Pfam:PF11998
            IPI:IPI00538024 PIR:E86159 RefSeq:NP_171790.1 UniGene:At.42573
            ProteinModelPortal:Q9SRY4 SMR:Q9SRY4 STRING:Q9SRY4 PaxDb:Q9SRY4
            PRIDE:Q9SRY4 EnsemblPlants:AT1G02910.1 GeneID:839350
            KEGG:ath:AT1G02910 TAIR:At1g02910 eggNOG:NOG253077
            HOGENOM:HOG000006163 InParanoid:Q9SRY4 OMA:KACCHAY PhylomeDB:Q9SRY4
            ProtClustDB:PLN03098 Genevestigator:Q9SRY4 Uniprot:Q9SRY4
        Length = 453

 Score = 213 (80.0 bits), Expect = 9.7e-17, P = 9.7e-17
 Identities = 44/146 (30%), Positives = 82/146 (56%)

Query:    84 RIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDV 143
             ++ +EV +PFR VR FFY AF A+  +     + +L+ A+     A ++ E     +I++
Sbjct:   187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query:   144 SAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGP 203
               + +   L+  ENK +  Q+ +++R+E+LS L LR+   +++ +  LR   R VI +G 
Sbjct:   247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query:   204 ASYIMESFKRSEPFTESLLERGVLVV 229
                +  + ++++ F   LL RGVL+V
Sbjct:   307 KETVTLAMQKADRFRTELLRRGVLLV 332


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      271       262   0.00091  114 3  11 22  0.43    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.35u 0.10s 22.45t   Elapsed:  00:00:07
  Total cpu time:  22.35u 0.10s 22.45t   Elapsed:  00:00:07
  Start:  Thu May  9 18:01:12 2013   End:  Thu May  9 18:01:19 2013

Back to top